Psyllid ID: psy534

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MMNSFAVKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATHVLYPDLLVVLGSFHIHTGT
Secondary Structure (PSIPRED)
cccHHHHHEEEEEEEcccccccccEEEEEEccccccccccccccEEEEEccccccccEEEEEccEEEEcccEEEEEEEEccccccccccccEEEEEEEccccccccccEEEEEEcccEEEEEEEEEcccccEEEEEccEEEEccc
Secondary Structure Prediction (SSPRO)
cccccEEcHHEHEEccccccccccccEEEEEccccccccccccEEEEEEccccccccEEEEEccccHHcccEEEEEEEEcccccccccccEEEEEEEEcccccccccEEEEEEccccEEEEEEEEccccccEEEEEcEEEEcccc
Coil and Loop (DISEMBL)
MMNSFAVKSIFQMLsvgdfaddedipvyiwydsyptheaeeykgrisrvdkespfgmaslnltkiresdqgwyECKVVFLnrspnshkngtwfhldvhgvfndgtelrisnirsqdigdytclaTHVLYPDLLVVLGSFHIHTGT
Flexible Loop (DISEMBL)
MMNSFAVKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKgrisrvdkespfgMASLnltkiresdqGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATHVLYPDLLVVLGSFHIHTGT
Low Complexity Region (SEG)
MMNSFAVKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATHVLYPDLLVVLGSFHIHTGT
Disordered region (IsUnstruct)
****FAVKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKG**********FGMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATHVLYPDLLVVLGSFHIH***
Disordered Region (DISOPRED)
****FAVKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYK***************SLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTE**********IGDYTCLATHVLYPDLLVVLGSFHI****
Disordered Region (DISEMBL)
MMNSFAVKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATHVLYPDLLVVLGSFHIHTGT
Disordered Region (DISPRO)
***SFAVKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATHVLYPDLLVVLGSFHIH***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMNSFAVKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATHVLYPDLLVVLGSFHIHTGT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
Q967D7	1531	Protein turtle OS=Drosoph	no	N/A	0.696	0.065	0.523	3e-39
Q9UPX0	1349	Protein turtle homolog B	yes	N/A	0.475	0.051	0.44	2e-13
Q9P2J2	1179	Protein turtle homolog A	no	N/A	0.468	0.057	0.368	3e-07
P0C5H6	1179	Protein turtle homolog A	no	N/A	0.468	0.057	0.381	4e-07
Q05BQ1	1179	Protein turtle homolog A	no	N/A	0.468	0.057	0.381	4e-07

>sp|Q967D7|TUTL_DROME Protein turtle OS=Drosophila melanogaster GN=tutl PE=2 SV=2

 Score =  160 bits (404), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/151 (52%), Positives = 89/151 (58%), Gaps = 50/151 (33%)

Query: 24  DIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRS 83
           D+P+YIWY+SYP H  E YKGR+SRV ++SPFG ASLNLT IRESDQGWYECKVVFLNR 
Sbjct: 176 DLPIYIWYESYPEHIEEGYKGRVSRVSQDSPFGSASLNLTNIRESDQGWYECKVVFLNRD 235

Query: 84  PNSHKNGTWFHLDVH--------------------------------------------- 98
           P  HKNGTWFHLDVH                                             
Sbjct: 236 PKQHKNGTWFHLDVHAPPRFSVTPEDIIYVNLGDSIILNCQADGTPTPEILWYKDANPVD 295

Query: 99  -----GVFNDGTELRISNIRSQDIGDYTCLA 124
                G+FNDGTELRIS IR +DIG+YTC+A
Sbjct: 296 PSPTVGIFNDGTELRISTIRHEDIGEYTCIA 326

Essential protein that plays a role in the establishment of coordinated motor control.
Drosophila melanogaster (taxid: 7227)

>sp|Q9UPX0|TUTLB_HUMAN Protein turtle homolog B OS=Homo sapiens GN=IGSF9B PE=2 SV=2

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 6/75 (8%)

Query: 25  IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSP 84
           IP++I +  YP H   EY GR S  DK      ASL L ++R  DQGWYECKV+ L++  
Sbjct: 69  IPIFIKFGYYPPHVDPEYAGRASLHDK------ASLRLEQVRSEDQGWYECKVLMLDQQY 122

Query: 85  NSHKNGTWFHLDVHG 99
           ++  NG+W HL ++ 
Sbjct: 123 DTFHNGSWVHLTINA 137

Homo sapiens (taxid: 9606)

>sp|Q9P2J2|TUTLA_HUMAN Protein turtle homolog A OS=Homo sapiens GN=IGSF9 PE=1 SV=2

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 8/76 (10%)

Query: 25  IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-- 82
           +P++I +  Y      +Y GR+ R+ K      ASL +  +R  DQGWYEC+V FL++  
Sbjct: 64  LPIFIQFGLYSPRIDPDYVGRV-RLQKG-----ASLQIEGLRVEDQGWYECRVFFLDQHI 117

Query: 83  SPNSHKNGTWFHLDVH 98
             +   NG+W HL V+
Sbjct: 118 PEDDFANGSWVHLTVN 133

Functions in dendrite outgrowth and synapse maturation.

Homo sapiens (taxid: 9606)

>sp|P0C5H6|TUTLA_RAT Protein turtle homolog A OS=Rattus norvegicus GN=Igsf9 PE=1 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 8/76 (10%)

Query: 25  IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-S 83
           +P++I +  Y      +Y GR+ R+        ASL +  +R  DQGWYEC+V+FL++ S
Sbjct: 64  LPIFIQFGLYSPRIDPDYVGRV-RLQTG-----ASLQIEGLRVEDQGWYECRVLFLDQHS 117

Query: 84  P-NSHKNGTWFHLDVH 98
           P     NG+W HL V+
Sbjct: 118 PEQDFANGSWVHLTVN 133

Functions in dendrite outgrowth and synapse maturation.

Rattus norvegicus (taxid: 10116)

>sp|Q05BQ1|TUTLA_MOUSE Protein turtle homolog A OS=Mus musculus GN=Igsf9 PE=1 SV=2

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 8/76 (10%)

Query: 25  IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-S 83
           +P++I +  Y      +Y GR+ R+        ASL +  +R  DQGWYEC+V+FL++ S
Sbjct: 64  LPIFIQFGLYSPRIDPDYVGRV-RLQTG-----ASLQIEGLRVEDQGWYECRVLFLDQHS 117

Query: 84  P-NSHKNGTWFHLDVH 98
           P     NG+W HL V+
Sbjct: 118 PEQDFANGSWVHLTVN 133

Functions in dendrite outgrowth and synapse maturation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
357618966	1094	hypothetical protein KGM_15726 [Danaus p	0.703	0.093	0.546	1e-42
270006125	1219	hypothetical protein TcasGA2_TC008291 [T	0.703	0.083	0.565	7e-42
383861456	1386	PREDICTED: LOW QUALITY PROTEIN: protein	0.703	0.073	0.539	3e-40
350403188	1236	PREDICTED: protein turtle-like [Bombus i	0.703	0.082	0.532	8e-40
242013609	1313	turtle protein, isoform, putative [Pedic	0.689	0.076	0.546	8e-40
340728223	1027	PREDICTED: protein turtle-like [Bombus t	0.703	0.099	0.532	1e-39
307167054	1161	Protein turtle [Camponotus floridanus]	0.731	0.091	0.496	1e-38
170032303	1482	turtle protein_ [Culex quinquefasciatus]	0.703	0.068	0.519	9e-38
195401062	1552	GJ16222 [Drosophila virilis] gi|19415600	0.696	0.065	0.523	1e-37
328790055	1201	PREDICTED: protein turtle isoform 1 [Api	0.689	0.083	0.532	1e-37

>gi|357618966|gb|EHJ71750.1| hypothetical protein KGM_15726 [Danaus plexippus]

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 83/152 (54%), Positives = 93/152 (61%), Gaps = 50/152 (32%)

Query: 23  EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR 82
           +DIP+YIWY+SYPTH  E Y+GR+SRV  +SP+G ASLNLT IRESDQGWYECKVVFLNR
Sbjct: 74  QDIPIYIWYESYPTHSGEGYEGRVSRVAPDSPYGAASLNLTNIRESDQGWYECKVVFLNR 133

Query: 83  SPNSHKNGTWFHLDVH-------------------------------------------- 98
           SPN HKNGTWFHLDVH                                            
Sbjct: 134 SPNQHKNGTWFHLDVHAPPRFSITPEDIIYVNLGDAIILNCQAEGTPTPEILWYKDANPV 193

Query: 99  ------GVFNDGTELRISNIRSQDIGDYTCLA 124
                 G+FNDGTELRISNIR +DIGDYTC+A
Sbjct: 194 EPSGTVGIFNDGTELRISNIRHEDIGDYTCIA 225

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006125|gb|EFA02573.1| hypothetical protein TcasGA2_TC008291 [Tribolium castaneum]

 Score =  174 bits (442), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 86/152 (56%), Positives = 95/152 (62%), Gaps = 50/152 (32%)

Query: 23  EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR 82
           +DIP+YIWY+SYPTH AE YKGR+SRV  +SP+G ASLNLT IRESDQGWYECKVVFLNR
Sbjct: 88  QDIPIYIWYESYPTHSAEGYKGRVSRVSPDSPYGAASLNLTNIRESDQGWYECKVVFLNR 147

Query: 83  SPNSHKNGTWFHLDVH-------------------------------------------- 98
           SPNSHKNGTWFHLDVH                                            
Sbjct: 148 SPNSHKNGTWFHLDVHAPPRFTDTPSDVIYVNLGDAIILTCTAEGTPTPEILWYKDANPV 207

Query: 99  ------GVFNDGTELRISNIRSQDIGDYTCLA 124
                 G+FNDGTELRISNIR +DIGDYTC+A
Sbjct: 208 DPSATIGIFNDGTELRISNIRHEDIGDYTCIA 239

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861456|ref|XP_003706202.1| PREDICTED: LOW QUALITY PROTEIN: protein turtle-like [Megachile rotundata]

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 82/152 (53%), Positives = 94/152 (61%), Gaps = 50/152 (32%)

Query: 23  EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR 82
           ++IP+YIWY+SYPTH  E Y+GR+SRV   SP+G+ASLNLT IRESDQGWYECKVVFLNR
Sbjct: 218 QEIPIYIWYESYPTHSGEGYEGRVSRVSPNSPYGVASLNLTDIRESDQGWYECKVVFLNR 277

Query: 83  SPNSHKNGTWFHLDVH-------------------------------------------- 98
           SPNSHKNGTWFHLDVH                                            
Sbjct: 278 SPNSHKNGTWFHLDVHAPPKFSITPEEVIYVNVGDGIILNCQAEGTPTPEILWYKDANPV 337

Query: 99  ------GVFNDGTELRISNIRSQDIGDYTCLA 124
                 G+FNDGTELRISNI+ +DIGDYTC+A
Sbjct: 338 EPSSIIGIFNDGTELRISNIKDEDIGDYTCIA 369

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403188|ref|XP_003486725.1| PREDICTED: protein turtle-like [Bombus impatiens]

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 81/152 (53%), Positives = 94/152 (61%), Gaps = 50/152 (32%)

Query: 23  EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR 82
           ++IP+YIWY+SYPTH  E Y+GR+SRV   SP+G+ASLNLT IRESDQGWYECKVVFLNR
Sbjct: 71  QEIPIYIWYESYPTHSGEGYEGRVSRVSPNSPYGVASLNLTDIRESDQGWYECKVVFLNR 130

Query: 83  SPNSHKNGTWFHLDVH-------------------------------------------- 98
           SPNSHKNGTWFHLDVH                                            
Sbjct: 131 SPNSHKNGTWFHLDVHAPPKFSITPEEMIYVNVGDAIILNCQAEGTPTPEILWYKDANPV 190

Query: 99  ------GVFNDGTELRISNIRSQDIGDYTCLA 124
                 G+FNDGTELRIS I+++DIGDYTC+A
Sbjct: 191 EPSTTIGIFNDGTELRISTIKNEDIGDYTCIA 222

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013609|ref|XP_002427495.1| turtle protein, isoform, putative [Pediculus humanus corporis] gi|212511890|gb|EEB14757.1| turtle protein, isoform, putative [Pediculus humanus corporis]

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 82/150 (54%), Positives = 93/150 (62%), Gaps = 50/150 (33%)

Query: 25  IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSP 84
           IP+YIWYDSYPTH  E Y+GR+SRV  +SP+G+ASLNLT IRESDQGWYECKVVFLNRSP
Sbjct: 12  IPIYIWYDSYPTHSGEGYEGRVSRVSPDSPYGLASLNLTDIRESDQGWYECKVVFLNRSP 71

Query: 85  NSHKNGTWFHLDVH---------------------------------------------- 98
           NSHKNGTWFHLDVH                                              
Sbjct: 72  NSHKNGTWFHLDVHAPPRFSVTPEDIIYVNLGDAIILNCQAEGTPTPEILWYKDANPVEP 131

Query: 99  ----GVFNDGTELRISNIRSQDIGDYTCLA 124
               G+FN+GTELRIS+IR +DIGDYTC+A
Sbjct: 132 SATIGIFNEGTELRISSIRHEDIGDYTCIA 161

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728223|ref|XP_003402427.1| PREDICTED: protein turtle-like [Bombus terrestris]

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/152 (53%), Positives = 94/152 (61%), Gaps = 50/152 (32%)

Query: 23  EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR 82
           ++IP+YIWY+SYPTH  E Y+GR+SRV   SP+G+ASLNLT IRESDQGWYECKVVFLNR
Sbjct: 192 QEIPIYIWYESYPTHSGEGYEGRVSRVSPNSPYGVASLNLTDIRESDQGWYECKVVFLNR 251

Query: 83  SPNSHKNGTWFHLDVH-------------------------------------------- 98
           SPNSHKNGTWFHLDVH                                            
Sbjct: 252 SPNSHKNGTWFHLDVHAPPKFSITPEEMIYVNVGDAIILNCQAEGTPTPEILWYKDANPV 311

Query: 99  ------GVFNDGTELRISNIRSQDIGDYTCLA 124
                 G+FNDGTELRIS I+++DIGDYTC+A
Sbjct: 312 EPSTTIGIFNDGTELRISTIKNEDIGDYTCIA 343

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307167054|gb|EFN60857.1| Protein turtle [Camponotus floridanus]

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/157 (49%), Positives = 94/157 (59%), Gaps = 51/157 (32%)

Query: 19  FADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV 78
           +   ++ P+YIWY+SYPTH  E Y+GR+SRV + SP+G ASLNLT IRESDQGWY+CKVV
Sbjct: 21  WCKGQETPIYIWYESYPTHSGEGYEGRVSRVSENSPYGQASLNLTNIRESDQGWYKCKVV 80

Query: 79  FLNRSPNSHKNGTWFHLDVH---------------------------------------- 98
           FLNRSPNSHKNGTWFHLDVH                                        
Sbjct: 81  FLNRSPNSHKNGTWFHLDVHAPPRFSITPDDMIYVNLGDAIILNCQAEGTPTPEILWYKD 140

Query: 99  -----------GVFNDGTELRISNIRSQDIGDYTCLA 124
                      G+FNDGTELR+S I+++DIGDYTC+A
Sbjct: 141 ANPVEPNGRDVGIFNDGTELRLSTIKTEDIGDYTCIA 177

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170032303|ref|XP_001844021.1| turtle protein_ [Culex quinquefasciatus] gi|167872307|gb|EDS35690.1| turtle protein [Culex quinquefasciatus]

 Score =  161 bits (407), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 79/152 (51%), Positives = 89/152 (58%), Gaps = 50/152 (32%)

Query: 23  EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR 82
           ++IP+YIWY+SYPTH  E Y+GR+SRV  +S FG ASLNLT IRESDQGWYECKVVFLNR
Sbjct: 288 QEIPIYIWYESYPTHSGEGYEGRVSRVSPDSSFGAASLNLTNIRESDQGWYECKVVFLNR 347

Query: 83  SPNSHKNGTWFHLDVH-------------------------------------------- 98
            P  HKNGTWFHLDVH                                            
Sbjct: 348 PPKQHKNGTWFHLDVHAPPRFSVTPEDIIYVNLGDSIILNCQADGTPTPEILWYKDANPV 407

Query: 99  ------GVFNDGTELRISNIRSQDIGDYTCLA 124
                 G+FNDGTELRIS IR +DIGDYTC+A
Sbjct: 408 DPSSTVGIFNDGTELRISTIRHEDIGDYTCIA 439

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195401062|ref|XP_002059133.1| GJ16222 [Drosophila virilis] gi|194156007|gb|EDW71191.1| GJ16222 [Drosophila virilis]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 79/151 (52%), Positives = 89/151 (58%), Gaps = 50/151 (33%)

Query: 24  DIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRS 83
           D+P+YIWY+SYP H  E YKGR+SRV ++SPFG ASLNLT IRESDQGWYECKVVFLNR 
Sbjct: 183 DLPIYIWYESYPEHIEEGYKGRVSRVSQDSPFGSASLNLTSIRESDQGWYECKVVFLNRD 242

Query: 84  PNSHKNGTWFHLDVH--------------------------------------------- 98
           P  HKNGTWFHLDVH                                             
Sbjct: 243 PKQHKNGTWFHLDVHAPPRFSVTPEDIIYVNLGDSIILNCQADGTPTPEILWYKDANPVD 302

Query: 99  -----GVFNDGTELRISNIRSQDIGDYTCLA 124
                G+FNDGTELRIS IR +DIG+YTC+A
Sbjct: 303 PSPTVGIFNDGTELRISTIRHEDIGEYTCIA 333

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790055|ref|XP_003251370.1| PREDICTED: protein turtle isoform 1 [Apis mellifera]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/152 (53%), Positives = 91/152 (59%), Gaps = 52/152 (34%)

Query: 23  EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR 82
           ++IP+YIWYDSYPTH  E Y+GR+SRV   SP+G ASLNLT IRESDQGWYECKVVFLNR
Sbjct: 28  QEIPIYIWYDSYPTHSGEGYEGRVSRVSPNSPYGGASLNLTDIRESDQGWYECKVVFLNR 87

Query: 83  SPNSHKNGTWFHLDVH-------------------------------------------- 98
           SPN  KNGTWFHLDVH                                            
Sbjct: 88  SPN--KNGTWFHLDVHAPPKFSITPEEMIYVNVGDAIILNCQAEGTPTPEILWYKDASPV 145

Query: 99  ------GVFNDGTELRISNIRSQDIGDYTCLA 124
                 G+FNDGTELRIS I+S+DIGDYTC+A
Sbjct: 146 EPSSTIGIFNDGTELRISTIKSEDIGDYTCIA 177

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
FB|FBgn0010473	1531	tutl "turtle" [Drosophila mela	0.517	0.048	0.786	2.7e-39
FB|FBgn0028482	719	CG16857 [Drosophila melanogast	0.655	0.132	0.423	3e-15
UNIPROTKB|Q9UPX0	1349	IGSF9B "Protein turtle homolog	0.648	0.069	0.386	1.5e-11
UNIPROTKB|F1MNG8	1179	IGSF9 "Uncharacterized protein	0.468	0.057	0.394	8.2e-10
UNIPROTKB|Q9P2J2	1179	IGSF9 "Protein turtle homolog	0.468	0.057	0.394	3.5e-09
RGD|1304566	1179	Igsf9 "immunoglobulin superfam	0.468	0.057	0.394	3.5e-09
ZFIN|ZDB-GENE-060810-28	2021	igsf9b "immunoglobulin superfa	0.468	0.033	0.351	4.4e-09
MGI|MGI:2135283	1179	Igsf9 "immunoglobulin superfam	0.468	0.057	0.394	4.4e-09

FB|FBgn0010473 tutl "turtle" [Drosophila melanogaster (taxid:7227)]

 Score = 349 (127.9 bits), Expect = 2.7e-39, Sum P(2) = 2.7e-39
 Identities = 59/75 (78%), Positives = 65/75 (86%)

Query:    24 DIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRS 83
             D+P+YIWY+SYP H  E YKGR+SRV ++SPFG ASLNLT IRESDQGWYECKVVFLNR 
Sbjct:   176 DLPIYIWYESYPEHIEEGYKGRVSRVSQDSPFGSASLNLTNIRESDQGWYECKVVFLNRD 235

Query:    84 PNSHKNGTWFHLDVH 98
             P  HKNGTWFHLDVH
Sbjct:   236 PKQHKNGTWFHLDVH 250

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0007629 "flight behavior" evidence=IMP

GO:0030537 "larval behavior" evidence=IMP

GO:0007422 "peripheral nervous system development" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008039 "synaptic target recognition" evidence=IMP

GO:0048814 "regulation of dendrite morphogenesis" evidence=IMP

GO:0070593 "dendrite self-avoidance" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0007414 "axonal defasciculation" evidence=IMP

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0028482 CG16857 [Drosophila melanogaster (taxid:7227)]

 Score = 203 (76.5 bits), Expect = 3.0e-15, P = 3.0e-15
 Identities = 44/104 (42%), Positives = 59/104 (56%)

Query:    27 VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNS 86
             ++ WY+   T  +E + GR+  V+    FG AS+NLT IRESDQGWY C+V F NRSP+ 
Sbjct:    78 IFTWYEQ-ETSTSELFNGRLHLVENHPEFGRASVNLTAIRESDQGWYHCQVSFPNRSPSV 136

Query:    87 HKNGTWFHLDVHGVFNDGTELRI----SNIRSQDIGDYTCLATH 126
               NGT +HL V G    G+ +RI      IR      + C+  H
Sbjct:   137 RNNGTAYHLAVQG----GSLIRIPPVNQTIREGQTAFFHCVMKH 176

GO:0007155 "cell adhesion" evidence=ISS

UNIPROTKB|Q9UPX0 IGSF9B "Protein turtle homolog B" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 39/101 (38%), Positives = 55/101 (54%)

Query:    25 IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSP 84
             IP++I +  YP H   EY GR S  DK      ASL L ++R  DQGWYECKV+ L++  
Sbjct:    69 IPIFIKFGYYPPHVDPEYAGRASLHDK------ASLRLEQVRSEDQGWYECKVLMLDQQY 122

Query:    85 NSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
             ++  NG+W HL ++      TE     I +++ G  T   T
Sbjct:   123 DTFHNGSWVHLTINAP-PTFTETPPQYIEAKEGGSITMTCT 162

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1MNG8 IGSF9 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 136 (52.9 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query:    25 IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-S 83
             +P++I +  Y      +Y GR+ R+ K    G ASL + ++R  DQGWYEC+V+FL++ +
Sbjct:    64 LPIFIQFGLYSPRIDPDYVGRV-RLQK----G-ASLQIEELRVEDQGWYECRVLFLDQHT 117

Query:    84 PNSHK-NGTWFHLDVH 98
             P     NG+W HL V+
Sbjct:   118 PEEDSANGSWVHLTVN 133

GO:0030425 "dendrite" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

UNIPROTKB|Q9P2J2 IGSF9 "Protein turtle homolog A" [Homo sapiens (taxid:9606)]

 Score = 129 (50.5 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
 Identities = 30/76 (39%), Positives = 45/76 (59%)

Query:    25 IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRS- 83
             +P++I +  Y      +Y GR+ R+ K    G ASL +  +R  DQGWYEC+V FL++  
Sbjct:    64 LPIFIQFGLYSPRIDPDYVGRV-RLQK----G-ASLQIEGLRVEDQGWYECRVFFLDQHI 117

Query:    84 P-NSHKNGTWFHLDVH 98
             P +   NG+W HL V+
Sbjct:   118 PEDDFANGSWVHLTVN 133

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0045202 "synapse" evidence=IEA

RGD|1304566 Igsf9 "immunoglobulin superfamily, member 9" [Rattus norvegicus (taxid:10116)]

 Score = 129 (50.5 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
 Identities = 30/76 (39%), Positives = 45/76 (59%)

Query:    25 IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-S 83
             +P++I +  Y      +Y GR+ R+      G ASL +  +R  DQGWYEC+V+FL++ S
Sbjct:    64 LPIFIQFGLYSPRIDPDYVGRV-RLQT----G-ASLQIEGLRVEDQGWYECRVLFLDQHS 117

Query:    84 PNSH-KNGTWFHLDVH 98
             P     NG+W HL V+
Sbjct:   118 PEQDFANGSWVHLTVN 133

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA;ISO

GO:0030054 "cell junction" evidence=IEA

GO:0030425 "dendrite" evidence=IEA;ISO

GO:0045202 "synapse" evidence=IEA

ZFIN|ZDB-GENE-060810-28 igsf9b "immunoglobulin superfamily, member 9b" [Danio rerio (taxid:7955)]

 Score = 129 (50.5 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
 Identities = 26/74 (35%), Positives = 45/74 (60%)

Query:    24 DIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRS 83
             ++P+ I + SY       YKGR+S + +    G ASL + K+   D+GW+EC+++ L+R+
Sbjct:    70 NVPILIKFGSYTPRVHPNYKGRVS-LSR----G-ASLMVEKLTLEDEGWFECRILLLDRT 123

Query:    84 PNSHKNGTWFHLDV 97
              +  +NGTW  L +
Sbjct:   124 SDEFQNGTWNFLSI 137

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:2135283 Igsf9 "immunoglobulin superfamily, member 9" [Mus musculus (taxid:10090)]

 Score = 129 (50.5 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
 Identities = 30/76 (39%), Positives = 45/76 (59%)

Query:    25 IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-S 83
             +P++I +  Y      +Y GR+ R+      G ASL +  +R  DQGWYEC+V+FL++ S
Sbjct:    64 LPIFIQFGLYSPRIDPDYVGRV-RLQT----G-ASLQIEGLRVEDQGWYECRVLFLDQHS 117

Query:    84 PNSH-KNGTWFHLDVH 98
             P     NG+W HL V+
Sbjct:   118 PEQDFANGSWVHLTVN 133

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016358 "dendrite development" evidence=IMP

GO:0030054 "cell junction" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030425 "dendrite" evidence=IMP

GO:0045202 "synapse" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	145
cd05901	117	cd05901, Ig_Versican, Immunoglobulin (Ig)-like dom	4e-05
pfam07686	114	pfam07686, V-set, Immunoglobulin V-set domain	0.001
cd05878	110	cd05878, Ig_Aggrecan_like, Immunoglobulin (Ig)-lik	0.002
cd05718	98	cd05718, Ig1_PVR_like, First immunoglobulin (Ig) d	0.002
cd00096	74	cd00096, Ig, Immunoglobulin domain	0.002

>gnl|CDD|143309 cd05901, Ig_Versican, Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

 Score = 40.3 bits (94), Expect = 4e-05
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 40  EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79
           +EY GR+S        G ASL + K+R SD G Y C+V+ 
Sbjct: 61  QEYMGRVSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMH 100

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. Length = 117

>gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 17/83 (20%)

Query: 27  VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNS 86
           ++    +        +KGR+  +         SL ++ +R SD G Y C V   N     
Sbjct: 49  IHYVTSTPNGKVGPRFKGRV-TLSGNGSKNDFSLTISNLRLSDSGTYTCAVSNPN----- 102

Query: 87  HKNGTWFHLDVHGVFNDGTELRI 109
                        VF  GT L +
Sbjct: 103 -----------ELVFGAGTRLTV 114

This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Length = 114

>gnl|CDD|143286 cd05878, Ig_Aggrecan_like, Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79
           +EY+GR+S  +     G ASL ++++R SD G Y C+V+ 
Sbjct: 53 GQEYQGRVSLPNYPENRGDASLEISRLRSSDSGVYRCEVMH 93

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. Length = 110

>gnl|CDD|143195 cd05718, Ig1_PVR_like, First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 33 SYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV 78
           Y       Y+GR+S ++  S    A+++++ +R  D+G Y C+  
Sbjct: 39 QYGISIPPSYEGRVSFLN--SSLEDATISISNLRLEDEGNYICEFA 82

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "canyon" with a footprint similar to that of the intercellular adhesion molecule-1 receptor on human rhinoviruses. This group also includes the first Ig-like domain of nectin-1 (also known as poliovirus receptor related protein(PVRL)1; CD111), nectin-3 (also known as PVRL 3), nectin-4 (also known as PVRL4; LNIR receptor)and DNAX accessory molecule 1 (DNAM-1; CD226). Length = 98

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 34.8 bits (79), Expect = 0.002
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 79  FLNRSPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATH 126
             N  P      T             T L ISN+  +D G YTC+A++
Sbjct: 18  LKNGKPLPSSVLTRVRSSRGTSSGSST-LTISNVTLEDSGTYTCVASN 64

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
KOG3513|consensus	1051		99.72
KOG3513|consensus	1051		99.61
PHA02826	227	IL-1 receptor-like protein; Provisional	99.47
PHA02785	326	IL-beta-binding protein; Provisional	99.36
KOG4221|consensus	1381		99.35
PHA02785	326	IL-beta-binding protein; Provisional	99.35
KOG4194|consensus	873		99.31
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.28
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.26
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.26
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.26
KOG4221|consensus	1381		99.25
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.23
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.22
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.22
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.22
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.19
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.18
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.18
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.18
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.18
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.18
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.17
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.17
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.17
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.17
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.16
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.16
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.15
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.15
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.14
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.13
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.13
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.13
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.12
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.12
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.11
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.11
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.11
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.11
KOG4222|consensus	1281		99.11
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.1
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.1
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.1
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	99.09
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.08
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.08
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.07
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.06
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.06
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.05
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	99.05
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.04
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.04
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.03
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.03
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.03
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.03
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.03
KOG4194|consensus	873		99.02
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.02
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.02
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.02
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.02
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.01
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.0
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.0
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	99.0
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.0
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.0
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.99
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.99
KOG4222|consensus	1281		98.99
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.99
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.98
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	98.97
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.97
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.96
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.96
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.95
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.93
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.92
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.92
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.92
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.91
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.91
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.9
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.9
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.9
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.89
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	98.88
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.87
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.86
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.85
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.84
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.84
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.84
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.83
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.82
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.82
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.81
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.8
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.8
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.79
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.78
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.75
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.75
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.73
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.72
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.72
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.71
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.7
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.69
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.69
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.66
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.64
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.63
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.63
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.63
PHA02826	227	IL-1 receptor-like protein; Provisional	98.61
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	98.61
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.6
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	98.59
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.59
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.56
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.56
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.54
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	98.52
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.51
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.51
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.5
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.5
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.5
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.49
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.47
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	98.46
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.45
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.42
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	98.41
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.41
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.4
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	98.39
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.37
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	98.37
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.36
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.35
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.35
smart00406	81	IGv Immunoglobulin V-Type.	98.35
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.34
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	98.34
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.33
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.33
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.32
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.32
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.31
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.3
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.29
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.29
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.29
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.28
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.28
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.28
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.28
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.27
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.26
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.25
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.23
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	98.23
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.22
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	98.22
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.22
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.21
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	98.21
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.2
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.2
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.2
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.2
PHA03376	221	BARF1; Provisional	98.2
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.19
smart00409	86	IG Immunoglobulin.	98.18
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.18
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	98.18
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	98.17
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.16
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.15
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.15
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.14
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	98.13
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.13
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.13
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.13
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.12
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	98.12
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	98.11
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.11
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.11
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	98.1
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.09
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.07
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.07
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	98.06
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	98.06
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.05
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.05
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.02
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.01
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.01
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.0
smart00408	63	IGc2 Immunoglobulin C-2 Type.	97.99
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	97.98
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	97.98
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	97.97
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	97.97
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	97.96
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	97.94
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	97.94
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	97.93
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	97.93
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	97.9
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	97.9
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	97.9
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.9
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	97.9
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	97.9
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	97.89
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.89
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	97.89
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	97.88
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	97.87
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	97.86
PF00047	64	ig: Immunoglobulin domain The Prosite family only	97.85
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	97.83
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	97.8
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	97.77
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	97.76
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	97.73
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	97.72
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	97.71
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	97.67
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	97.67
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.66
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	97.65
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	97.65
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	97.64
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	97.62
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.58
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	97.57
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	97.55
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	97.49
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.48
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	97.47
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	97.45
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	97.45
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	97.43
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	97.41
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.4
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	97.4
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	97.4
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	97.4
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	97.39
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	97.37
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	97.35
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	97.32
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	97.31
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.29
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	97.22
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	97.17
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	97.14
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	97.1
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.1
smart00407	75	IGc1 Immunoglobulin C-Type.	97.09
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	97.08
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.07
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	97.03
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	97.01
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	97.0
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	96.96
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	96.9
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	96.89
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	96.86
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	96.85
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.81
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	96.76
KOG3515|consensus	741		96.72
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	96.69
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	96.65
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	96.61
smart00409	86	IG Immunoglobulin.	96.61
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	96.61
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	96.6
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	96.53
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	96.51
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	96.5
PHA02633	63	hypothetical protein; Provisional	96.5
cd05770	93	IgC_beta2m Class I major histocompatibility comple	96.45
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	96.44
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.36
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	96.36
PHA02633	63	hypothetical protein; Provisional	96.36
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	96.32
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	96.32
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	96.22
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	96.2
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	96.2
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	96.2
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	96.2
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	96.05
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.03
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	95.91
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.9
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	95.88
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	95.83
smart00406	81	IGv Immunoglobulin V-Type.	95.79
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	95.73
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	95.65
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	95.6
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	95.4
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	95.38
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	95.22
PHA03376	221	BARF1; Provisional	95.12
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	95.11
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	94.91
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	94.83
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	94.77
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	94.68
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	94.68
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	94.14
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	93.73
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	93.72
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	93.59
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	93.37
PHA02987	189	Ig domain OX-2-like protein; Provisional	93.26
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	93.12
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	93.08
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	92.67
KOG3515|consensus	741		92.66
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	91.6
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	91.51
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	91.04
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	90.86
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	90.6
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	90.34
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	89.5
PHA02982	251	hypothetical protein; Provisional	88.26
PHA02982	251	hypothetical protein; Provisional	87.09
KOG1480|consensus	909		87.05
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	84.52
PHA02865	338	MHC-like TNF binding protein; Provisional	82.57
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	81.76

>KOG3513|consensus

Probab=99.72  E-value=1.4e-16  Score=130.78  Aligned_cols=125  Identities=26%  Similarity=0.356  Sum_probs=95.1

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec------
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN------   81 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~------   81 (145)
                      .+.+.++...|-+-|.|.|.+.|+||+.+....+..-|..+       .++.|.|++|+.+|+|.|+|.|.|.-      
T Consensus       343 ~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i-------~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~an  415 (1051)
T KOG3513|consen  343 ADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKI-------DDGTLIISNVQESDSGVYQCIAENKYGTIYAN  415 (1051)
T ss_pred             ecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEE-------eCCEEEEEecccccCeEEEeeeecccceEeee
Confidence            46677889999999999999999999865332222222333       38999999999999999999996532      


Q ss_pred             ----C---CC----CC------CCCCcEEEEEEeE------------------------EecCCcEEEEcccCCCCCeee
Q psy534           82 ----R---SP----NS------HKNGTWFHLDVHG------------------------VFNDGTELRISNIRSQDIGDY  120 (145)
Q Consensus        82 ----~---~~----~~------~~~g~~~~l~c~~------------------------~~~~~~~L~i~~v~~~d~G~Y  120 (145)
                          +   .|    ++      +..|..+.+.|..                        ...+| +|.|.+++++|+|.|
T Consensus       416 A~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edG-tL~I~n~t~~DaG~Y  494 (1051)
T KOG3513|consen  416 AELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDG-TLEISNVTRSDAGKY  494 (1051)
T ss_pred             eEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCC-cEEecccCcccCcEE
Confidence                1   11    11      3359999999980                        11344 999999999999999


Q ss_pred             EEEEecCCC-----CcEEEEeCeeE
Q psy534          121 TCLATHVLY-----PDLLVVLGSFH  140 (145)
Q Consensus       121 ~C~a~n~~g-----~~~~v~~~~~~  140 (145)
                      +|.|+|.+|     .+|.|.....+
T Consensus       495 tC~A~N~~G~a~~~~~L~Vkd~tri  519 (1051)
T KOG3513|consen  495 TCVAENKLGKAESTGNLIVKDATRI  519 (1051)
T ss_pred             EEEEEcccCccceEEEEEEecCceE
Confidence            999999999     67777776655

>KOG3513|consensus

Probab=99.61  E-value=1.4e-14  Score=119.26  Aligned_cols=120  Identities=23%  Similarity=0.278  Sum_probs=92.7

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-----
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-----   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-----   82 (145)
                      +.-+..+.+-|.+.|+|.|.+.|.|.++.    ...+|....     .....|.|.+++.+|+|.|+|.+.|...     
T Consensus       253 a~~G~~v~LECfA~G~P~P~i~W~k~~g~----~~~~r~~~~-----~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~  323 (1051)
T KOG3513|consen  253 ALKGQSVKLECFALGNPTPQIKWRKVDGK----PPPRRATYS-----NYGKVLKIPNVQYEDAGEYECIAENSRGSATHS  323 (1051)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEeCCCC----CCCcceeee-----ccccEEEecccCcCCCeEEEEEEecccccceee
Confidence            34466788889999999999999999864    244555542     3488999999999999999999976531     


Q ss_pred             -------CCC--------CCCCCcEEEEEEeE--------------------------EecCCcEEEEcccCCCCCeeeE
Q psy534           83 -------SPN--------SHKNGTWFHLDVHG--------------------------VFNDGTELRISNIRSQDIGDYT  121 (145)
Q Consensus        83 -------~~~--------~~~~g~~~~l~c~~--------------------------~~~~~~~L~i~~v~~~d~G~Y~  121 (145)
                             +|.        ....|+++.+.|..                          .... +.|.|.+|+.+|+|.|.
T Consensus       324 ~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~-g~L~is~v~~~dsg~YQ  402 (1051)
T KOG3513|consen  324 GHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDD-GTLIISNVQESDSGVYQ  402 (1051)
T ss_pred             EEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeC-CEEEEEecccccCeEEE
Confidence                   221        13459999999981                          1123 48999999999999999


Q ss_pred             EEEecCCC-----CcEEEEeC
Q psy534          122 CLATHVLY-----PDLLVVLG  137 (145)
Q Consensus       122 C~a~n~~g-----~~~~v~~~  137 (145)
                      |.|+|..|     +.+.|+..
T Consensus       403 C~A~Nk~G~i~anA~L~V~a~  423 (1051)
T KOG3513|consen  403 CIAENKYGTIYANAELKVLAS  423 (1051)
T ss_pred             eeeecccceEeeeeEEEEEcc
Confidence            99999999     66666554

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.47  E-value=8.8e-13  Score=94.14  Aligned_cols=127  Identities=16%  Similarity=0.136  Sum_probs=80.3

Q ss_pred             hhhccceeeEEeecCCC-----------ccEEEEecCCCCcccccccce---EEEecCCCCCCeeeEEEcccCCCCCEEE
Q psy534            8 KSIFQMLSVGDFADDED-----------IPVYIWYDSYPTHEAEEYKGR---ISRVDKESPFGMASLNLTKIRESDQGWY   73 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p-----------~p~~~w~k~~~~~~~~~~~~R---~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   73 (145)
                      +.++.|+.+.|-..+.|           .+.+.|+|++....-.....|   ..+..++....+.+|.|.+++.+|+|.|
T Consensus        34 v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG~Y  113 (227)
T PHA02826         34 AKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEGIY  113 (227)
T ss_pred             ecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCEEE
Confidence            35677888888766543           347889988642100000011   0000111112367899999999999999


Q ss_pred             EEEEEEecC------------CCC--CCCCCcEEEEEEeE--------------------Ee---------cCCcEEEEc
Q psy534           74 ECKVVFLNR------------SPN--SHKNGTWFHLDVHG--------------------VF---------NDGTELRIS  110 (145)
Q Consensus        74 ~C~~~~~~~------------~~~--~~~~g~~~~l~c~~--------------------~~---------~~~~~L~i~  110 (145)
                      .|.+.+...            ++.  ....|+.+.|.|..                    ..         ..+..|.|.
T Consensus       114 ~C~a~N~~~~~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~~~L~I~  193 (227)
T PHA02826        114 ICTISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNNSTLVIK  193 (227)
T ss_pred             EEEEEECCcceEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCCCCEEEEC
Confidence            999976431            111  12358889999961                    00         123479999


Q ss_pred             ccCCCCCeeeEEEEecCC-CCcEEE
Q psy534          111 NIRSQDIGDYTCLATHVL-YPDLLV  134 (145)
Q Consensus       111 ~v~~~d~G~Y~C~a~n~~-g~~~~v  134 (145)
                      +++.+|+|.|+|.|+... |.++.+
T Consensus       194 ~V~~~DsG~YtC~a~~~~~g~~y~~  218 (227)
T PHA02826        194 SATHDDSGIYTCNLRFNKNSNNYNI  218 (227)
T ss_pred             cCCHHhCEEEEEEEEEeECCEEEEE
Confidence            999999999999999975 444443

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.36  E-value=9.6e-12  Score=93.35  Aligned_cols=112  Identities=16%  Similarity=0.312  Sum_probs=76.8

Q ss_pred             cceeeEE-----eecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec-----
Q psy534           12 QMLSVGD-----FADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN-----   81 (145)
Q Consensus        12 ~~~~~~~-----w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-----   81 (145)
                      ....+.|     |..+.|.|.+.|+++..  +   ...|+..      ..++.|.|.+++.+|+|.|+|.+.+..     
T Consensus       137 ~~~~i~C~~~~~~~~~~~~~~i~W~k~~~--~---~~~r~~~------~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~  205 (326)
T PHA02785        137 STGEMVCPNINAFIASNVNADIIWSGHRR--L---RNKRLKQ------RTPGIITIEDVRKNDAGYYTCVLKYIYGDKTY  205 (326)
T ss_pred             CcEEEECCChhhcccCCCCceEEEccCCc--c---CCcceEe------cCCCeEEEeecChhhCeEEEEEEEeccCCEEE
Confidence            3344556     34567889999988642  1   1234443      235789999999999999999996521     


Q ss_pred             ---------C-----CC-----C--CCCCCcEEEEEEeEE------------ecC-------------------------
Q psy534           82 ---------R-----SP-----N--SHKNGTWFHLDVHGV------------FND-------------------------  103 (145)
Q Consensus        82 ---------~-----~~-----~--~~~~g~~~~l~c~~~------------~~~-------------------------  103 (145)
                               +     +|     .  ....|+.+.|.|...            ..+                         
T Consensus       206 ~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~  285 (326)
T PHA02785        206 NVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTD  285 (326)
T ss_pred             eEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccc
Confidence                     0     11     0  013488999999810            000                         


Q ss_pred             -----CcEEEEcccCCCCCeeeEEEEecCCCCcEEE
Q psy534          104 -----GTELRISNIRSQDIGDYTCLATHVLYPDLLV  134 (145)
Q Consensus       104 -----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~v  134 (145)
                           ...|.|.+|+.+|+|.|+|.|.|..|.+..+
T Consensus       286 ~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~~~  321 (326)
T PHA02785        286 KRRVITSRLNINPVKEEDATTFTCMAFTIPSISKTV  321 (326)
T ss_pred             cceeeeEEEEECCcchhcCeeeEEEEEeccCceEee
Confidence                 1268999999999999999999999855543

>KOG4221|consensus

Probab=99.35  E-value=1.7e-11  Score=101.78  Aligned_cols=119  Identities=24%  Similarity=0.322  Sum_probs=88.1

Q ss_pred             ccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC--------
Q psy534           11 FQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR--------   82 (145)
Q Consensus        11 ~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~--------   82 (145)
                      +.+..+-|-..+.|.|++.|.|+..+   ...++|+-.      ..++.|.|.+++..|.|.|+|.+....+        
T Consensus       155 g~ta~f~c~vn~e~~p~i~w~kn~~p---l~~~~r~i~------lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~  225 (1381)
T KOG4221|consen  155 GQTALFSCEVNAEPVPTIMWLKNDQP---LPLDSRVIV------LPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAE  225 (1381)
T ss_pred             CCcEEEEEEEcCccCceeEEeccccc---ccCCCcEEE------cCCCcEEecccccCCCceEEEEEecCCcCCccceeE
Confidence            45566678777889999999999864   234557765      3499999999999999999999954321        


Q ss_pred             -----------------CCC--CCCCCcEEEEEEeE---------E---------------ecCCcEEEEcccCCCCCee
Q psy534           83 -----------------SPN--SHKNGTWFHLDVHG---------V---------------FNDGTELRISNIRSQDIGD  119 (145)
Q Consensus        83 -----------------~~~--~~~~g~~~~l~c~~---------~---------------~~~~~~L~i~~v~~~d~G~  119 (145)
                                       .|.  ....|+.+.|.|..         +               ...+.+|.|.+++..|+|.
T Consensus       226 ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~  305 (1381)
T KOG4221|consen  226 LTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGK  305 (1381)
T ss_pred             EEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCce
Confidence                             111  13459999999981         0               1123578999999999999


Q ss_pred             eEEEEecC--CC---CcEEEEeCe
Q psy534          120 YTCLATHV--LY---PDLLVVLGS  138 (145)
Q Consensus       120 Y~C~a~n~--~g---~~~~v~~~~  138 (145)
                      |+|+|.|.  .+   ++|.|....
T Consensus       306 YtC~Atn~~D~idasaev~V~a~P  329 (1381)
T KOG4221|consen  306 YTCRATNTNDSIDASAEVTVLAPP  329 (1381)
T ss_pred             EEEEecCCCcccccceEEEEEcCC
Confidence            99999993  33   677776654

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.35  E-value=1.3e-11  Score=92.62  Aligned_cols=109  Identities=17%  Similarity=0.166  Sum_probs=76.4

Q ss_pred             hccceeeEEee-----cCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC--
Q psy534           10 IFQMLSVGDFA-----DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR--   82 (145)
Q Consensus        10 ~~~~~~~~~w~-----~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~--   82 (145)
                      .+.|+.+.|-.     .|.|.+.++|+|++.. .     .|.....     ....|.|.+++.+|+|.|+|.+.+...  
T Consensus        40 ~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~-~-----~~~~~~~-----~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~  108 (326)
T PHA02785         40 ENEPVILPCPQINTLSSGYNILDILWEKRGAD-N-----DRIIPID-----NGSNMLILNPTQSDSGIYICITKNETYCD  108 (326)
T ss_pred             cCCCEEEECCCccccccCCCCceEEEEECCCc-c-----ceEEEcc-----CCceEEEcccCcccCeEEEEEEECCCcce
Confidence            36788888875     5889999999999742 1     1222211     134588999999999999999965321  


Q ss_pred             -----------CC---------CCCCCCcEEEEEEeE-----------E---------------ecCCcEEEEcccCCCC
Q psy534           83 -----------SP---------NSHKNGTWFHLDVHG-----------V---------------FNDGTELRISNIRSQD  116 (145)
Q Consensus        83 -----------~~---------~~~~~g~~~~l~c~~-----------~---------------~~~~~~L~i~~v~~~d  116 (145)
                                 .+         .....|....+.|..           .               ...++.|.|.+++.+|
T Consensus       109 ~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d  188 (326)
T PHA02785        109 MMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRRLRNKRLKQRTPGIITIEDVRKND  188 (326)
T ss_pred             EEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCccCCcceEecCCCeEEEeecChhh
Confidence                       11         112347778888950           0               0112479999999999


Q ss_pred             CeeeEEEEecCCC
Q psy534          117 IGDYTCLATHVLY  129 (145)
Q Consensus       117 ~G~Y~C~a~n~~g  129 (145)
                      +|.|+|.|.|..|
T Consensus       189 ~G~Y~C~~~n~~g  201 (326)
T PHA02785        189 AGYYTCVLKYIYG  201 (326)
T ss_pred             CeEEEEEEEeccC
Confidence            9999999999887

>KOG4194|consensus

Probab=99.31  E-value=2.1e-11  Score=95.80  Aligned_cols=115  Identities=22%  Similarity=0.262  Sum_probs=87.0

Q ss_pred             hccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-------
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-------   82 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-------   82 (145)
                      -++...+.|-+.|.|.|.|.|.|.++.........|.+...+     +..+-|.||+.+|+|.|.|.|.+...       
T Consensus       626 tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpe-----dd~f~Itnvk~eD~GiYtC~A~n~AG~isanAt  700 (873)
T KOG4194|consen  626 TGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPE-----DDVFFITNVKIEDQGIYTCTAQNVAGQISANAT  700 (873)
T ss_pred             cccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCC-----CCEEEEecccccccceeEEeeeccccceeeceE
Confidence            345566789899999999999998876444445668887654     78899999999999999999976531       


Q ss_pred             -----CCC--------CCCCCcEEEEEEeE------------------------EecC-CcEEEEcccCCCCCeeeEEEE
Q psy534           83 -----SPN--------SHKNGTWFHLDVHG------------------------VFND-GTELRISNIRSQDIGDYTCLA  124 (145)
Q Consensus        83 -----~~~--------~~~~g~~~~l~c~~------------------------~~~~-~~~L~i~~v~~~d~G~Y~C~a  124 (145)
                           .|.        ....|+.+.|.|..                        .+.+ +-.|.+.+...+|+|.|+|..
T Consensus       701 L~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem  780 (873)
T KOG4194|consen  701 LTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEM  780 (873)
T ss_pred             EEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEE
Confidence                 111        12349999999981                        1122 235777888899999999999


Q ss_pred             ecCCC
Q psy534          125 THVLY  129 (145)
Q Consensus       125 ~n~~g  129 (145)
                      .|..|
T Consensus       781 ~~~~~  785 (873)
T KOG4194|consen  781 SNTLG  785 (873)
T ss_pred             Eeecc
Confidence            99988

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.28  E-value=1.7e-11  Score=72.97  Aligned_cols=62  Identities=19%  Similarity=0.288  Sum_probs=46.4

Q ss_pred             eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+-|.+.|.|.|.+.|+|++... ... .+|+.+..+  ..+..+|.|.+++.+|+|.|.|.+.|.
T Consensus         2 ~l~C~v~G~P~P~i~W~k~~~~i-~~~-~~r~~~~~~--~~g~~~L~I~~~~~~D~G~Y~C~A~N~   63 (75)
T cd05892           2 KLECQISAIPPPKIFWKRNNEMV-QYN-TDRISLYQD--NSGRVTLLIKNVNKKDAGWYTVSAVNE   63 (75)
T ss_pred             EEEEEEEecCCCeEEEEECCEEC-cCC-CCeEEEEEc--CCCcEEEEECCCChhhCEEEEEEEEcC
Confidence            56788899999999999997542 211 246665432  123458999999999999999999864

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.26  E-value=3.1e-11  Score=71.61  Aligned_cols=61  Identities=15%  Similarity=0.198  Sum_probs=44.9

Q ss_pred             eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+.|-+.|.|.|.+.|+|++..........|++...     ....|.|.+++.+|+|.|.|.|.+.
T Consensus         2 ~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~A~N~   62 (75)
T cd05763           2 RLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMP-----EDDVFFIVDVKIEDTGVYSCTAQNT   62 (75)
T ss_pred             EeEeecccccCCEEEEEeCCCccCCcccccceEEec-----CCCEEEEeeCCcccCEEEEEEEEcC
Confidence            457888899999999999875322222234444422     2568999999999999999999753

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.26  E-value=2e-11  Score=72.35  Aligned_cols=60  Identities=20%  Similarity=0.218  Sum_probs=47.6

Q ss_pred             cceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.+-|-+.|.|.|.+.|+|++....   -..|+.+.      .+++|.|.+++.+|+|.|.|.|.+.
T Consensus         2 ~~~~l~C~~~g~P~p~v~W~k~~~~l~---~~~r~~~~------~~g~L~I~~v~~~D~G~Y~C~A~N~   61 (73)
T cd05852           2 GRVIIECKPKAAPKPKFSWSKGTELLV---NNSRISIW------DDGSLEILNITKLDEGSYTCFAENN   61 (73)
T ss_pred             CeEEEEEecceeCCCEEEEEeCCEecc---cCCCEEEc------CCCEEEECcCChhHCEEEEEEEECC
Confidence            456788988999999999999875422   12466552      3678999999999999999999864

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.26  E-value=2.3e-11  Score=72.47  Aligned_cols=61  Identities=18%  Similarity=0.220  Sum_probs=46.3

Q ss_pred             cceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.+.|-+.|.|.|.+.|+|++..........|...       .+++|.|.+++.+|+|.|.|.+.+
T Consensus         2 ~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~N   62 (76)
T cd05867           2 ETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV-------SSGALILTDVQPSDTAVYQCEARN   62 (76)
T ss_pred             CeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe-------eCCEEEECCCChhhCEEEEEEEEC
Confidence            4567889999999999999998854222122223332       267899999999999999999975

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>KOG4221|consensus

Probab=99.25  E-value=2e-11  Score=101.47  Aligned_cols=124  Identities=23%  Similarity=0.256  Sum_probs=93.2

Q ss_pred             HHhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC---
Q psy534            6 AVKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR---   82 (145)
Q Consensus         6 ~~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~---   82 (145)
                      ++...+.++.+-|-+.|.|.|.+.|.+++.. ++.+- .|+.+      .+.++|.|++++..|+|.|+|+|.+...   
T Consensus       247 ~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~-i~~ds-~rivl------~g~~slliS~a~~~dSg~YtC~Atn~~D~id  318 (1381)
T KOG4221|consen  247 AVVVEGDDVVLECVVSGVPKPSVKWLRNGEK-ISVDS-YRIVL------VGGSSLLISNATDDDSGKYTCRATNTNDSID  318 (1381)
T ss_pred             cccccCCcEEEEEEecCCCCCceEEeeCCee-eeecc-eEEEE------ecccceEEeccccccCceEEEEecCCCcccc
Confidence            4566788999999999999999999998754 22221 45655      3488999999999999999999976321   


Q ss_pred             ---------CC------CC--CCCCcEEEEEEeE-----------------------EecCCcEEEEcccCCCCCeeeEE
Q psy534           83 ---------SP------NS--HKNGTWFHLDVHG-----------------------VFNDGTELRISNIRSQDIGDYTC  122 (145)
Q Consensus        83 ---------~~------~~--~~~g~~~~l~c~~-----------------------~~~~~~~L~i~~v~~~d~G~Y~C  122 (145)
                               +|      ..  +..+.++.+.|..                       ....+..|+|.-+-..|+|.|.|
T Consensus       319 asaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQc  398 (1381)
T KOG4221|consen  319 ASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQC  398 (1381)
T ss_pred             cceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhh
Confidence                     11      11  2347788888971                       11223358999899999999999


Q ss_pred             EEecCCC-----CcEEEEeC
Q psy534          123 LATHVLY-----PDLLVVLG  137 (145)
Q Consensus       123 ~a~n~~g-----~~~~v~~~  137 (145)
                      .++|.+|     +++.|+.+
T Consensus       399 vaen~~G~a~a~a~l~vv~~  418 (1381)
T KOG4221|consen  399 VAENDAGSAQAAAQLEVVPQ  418 (1381)
T ss_pred             hhccCcccccchhhheeccC
Confidence            9999999     77777666

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.23  E-value=2.8e-11  Score=73.91  Aligned_cols=69  Identities=17%  Similarity=0.193  Sum_probs=52.6

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ....+.++.+.|.+.|.|.|.+.|++++......  .+|+.+...   ...++|.|.++..+|+|.|.|.+.|.
T Consensus         6 ~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~--~~r~~~~~~---~~~~~L~I~~~~~~D~G~Y~c~a~N~   74 (86)
T cd05894           6 VVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTET--EGRVRVESY---KDLSSFVIEGAEREDEGVYTITVTNP   74 (86)
T ss_pred             EEEcCCEEEEEeeEeecCCCeEEEEECCEECccC--CCeEEEEEc---CCeEEEEECCCccCcCEEEEEEEEeC
Confidence            3456778999999999999999999998543221  235554321   23678999999999999999999864

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.22  E-value=3.4e-11  Score=71.31  Aligned_cols=61  Identities=23%  Similarity=0.286  Sum_probs=47.3

Q ss_pred             ccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           11 FQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        11 ~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +..+.+.|-+.|.|.|.+.|+|++.. +..  ..+...      ..+++|.|.+++.+|+|.|.|.|.+.
T Consensus         2 G~~v~l~C~~~g~P~p~i~W~k~g~~-~~~--~~~~~~------~~~~~L~I~~v~~~D~G~Y~C~A~N~   62 (74)
T cd05745           2 GQTVDFLCEAQGYPQPVIAWTKGGSQ-LSV--DRRHLV------LSSGTLRISRVALHDQGQYECQAVNI   62 (74)
T ss_pred             CCeEEEEeECCEecCCEEEEEECCEE-CCC--CCCeEE------ccCCeEEEeeCCHHhCEEEEEEEEeC
Confidence            46778899999999999999998753 221  223333      23679999999999999999999864

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.22  E-value=3.5e-11  Score=71.65  Aligned_cols=63  Identities=16%  Similarity=0.252  Sum_probs=46.1

Q ss_pred             eeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           14 LSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        14 ~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +.+-|.+.|.|.|.+.|+|++.....  -..|+.+..+  ..+..+|.|.+++.+|+|.|.|.|.|.
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~--~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~A~N~   63 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTH--NTDRVSMHQD--NCGYICLLIQGATKEDAGWYTVSAKNE   63 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCC--CCCeEEEEEc--CCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence            35679999999999999999854321  1245555322  112347999999999999999999863

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.22  E-value=4.8e-11  Score=70.74  Aligned_cols=59  Identities=25%  Similarity=0.419  Sum_probs=45.4

Q ss_pred             eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+.|.+.|.|.|.+.|+|++.. +......|+..      ..+++|.|.+++.+|+|.|.|.+.+.
T Consensus         2 ~l~C~~~G~P~p~v~W~k~~~~-~~~~~~~~~~~------~~~g~L~i~~~~~~D~G~Y~C~a~N~   60 (74)
T cd05738           2 TMLCAASGNPDPEITWFKDFLP-VDTTSNGRIKQ------LRSGALQIENSEESDQGKYECVATNS   60 (74)
T ss_pred             EEEEEEeEecCCEEEEEECCEE-CccCCCCCEEE------cCCcEEEECCCChhhCEEEEEEEECC
Confidence            4678889999999999998753 22223345554      23678999999999999999999853

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.19  E-value=1e-10  Score=70.13  Aligned_cols=60  Identities=27%  Similarity=0.396  Sum_probs=44.9

Q ss_pred             eeEEeecCCCccEEEEecCCCCcccc-----cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           15 SVGDFADDEDIPVYIWYDSYPTHEAE-----EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        15 ~~~~w~~g~p~p~~~w~k~~~~~~~~-----~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+.|.+.|.|.|.+.|++++......     ...+|+...      .+++|.|.+++.+|+|.|.|.|.+.
T Consensus         2 ~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~------~~~~L~I~~v~~~D~G~Y~C~a~N~   66 (79)
T cd05734           2 TLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL------SNGSLLIKHVLEEDSGYYLCKVSND   66 (79)
T ss_pred             EeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe------cCCeEEECcCCcccCEEEEEEEEeC
Confidence            46798999999999999975321100     133555542      3689999999999999999999864

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.18  E-value=1.2e-10  Score=69.92  Aligned_cols=63  Identities=14%  Similarity=0.179  Sum_probs=43.4

Q ss_pred             eEEeecCCCccEEEEecCCCCcccccc-cceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           16 VGDFADDEDIPVYIWYDSYPTHEAEEY-KGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        16 ~~~w~~g~p~p~~~w~k~~~~~~~~~~-~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +-|-+.|+|.|.+.|||++.......+ ..+.....  .....++|.|.+++.+|+|.|.|.|.|.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~--~~~~~~~L~i~~~~~~D~G~YtC~A~N~   66 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVIN--NTEYHGCLQLDNPTHLNNGIYTLVAKNE   66 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeec--ccceEEEEEECCCCcccCEEEEEEEEcC
Confidence            445667999999999999865322221 11111111  1233678999999999999999999864

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.18  E-value=6e-11  Score=69.77  Aligned_cols=58  Identities=22%  Similarity=0.282  Sum_probs=44.4

Q ss_pred             eeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           14 LSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        14 ~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +.+.|.+.|.|.|.+.|++++.....    .+....     ....+|.|.+++.+|+|.|.|.|.+.
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~----~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~N~   58 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSP----NRTKKL-----NNNKTLQLDNVLESDDGEYVCTAENS   58 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCC----CceeEE-----cCCCEEEEcccCHHhCEEEEEEEEcC
Confidence            35679999999999999999754321    122221     23789999999999999999999853

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.18  E-value=6.5e-11  Score=69.19  Aligned_cols=58  Identities=19%  Similarity=0.266  Sum_probs=44.6

Q ss_pred             eeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           14 LSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        14 ~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +.+.|.+.|.|.|.+.|+|++.. +.  ...|..+      ..++.|.|.+++.+|+|.|.|.+.+.
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~-~~--~~~~~~~------~~~~~L~I~~~~~~D~G~Y~C~a~N~   58 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQ-VT--ESGKFHI------SPEGYLAIRDVGVADQGRYECVARNT   58 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEE-CC--CCCCEEE------CCCCEEEECcCChhhCEEEEEEEECC
Confidence            35779889999999999998743 22  1234444      22678999999999999999999753

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.18  E-value=1.9e-10  Score=69.71  Aligned_cols=67  Identities=19%  Similarity=0.174  Sum_probs=49.4

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.++.+.|.+.|.|.|.+.|+|++..........+...     .....+|.|.+++.+|+|.|.|.+.+.
T Consensus         7 ~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~-----~~~~~~l~i~~~~~~D~G~Y~C~a~N~   73 (85)
T cd05857           7 PAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKV-----RNQHWSLIMESVVPSDKGNYTCVVENE   73 (85)
T ss_pred             CCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEE-----eCCceEEEEccCCcccCEEEEEEEEeC
Confidence            4577889999999999999999999754222111112222     123678999999999999999999863

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.18  E-value=1.6e-10  Score=68.68  Aligned_cols=62  Identities=19%  Similarity=0.270  Sum_probs=45.7

Q ss_pred             eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+.|.+.|.|.|.+.|+|++.. +... ..|+.+..+  ..+..+|.|.+++.+|+|.|.|.+.+.
T Consensus         2 ~L~C~v~G~P~P~v~W~k~~~~-i~~~-~~r~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~   63 (75)
T cd05744           2 RLECRVSAIPPPQIFWKKNNEM-LTYN-TDRISLYQD--NCGRICLLIQNANKEDAGWYTVSAVNE   63 (75)
T ss_pred             EEEEEEeecCCCeEEEEECCEE-CCCC-CCcEEEEEc--CCCeEEEEECCCCcccCEEEEEEEEcC
Confidence            5678899999999999999854 2211 235554321  123457999999999999999999864

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.17  E-value=1.6e-10  Score=69.18  Aligned_cols=63  Identities=22%  Similarity=0.395  Sum_probs=47.5

Q ss_pred             cceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.+.|-+.|.|.|.+.|++++.....   ..|+.+..   ..+.+.|.|.+++.+|+|.|.|.+.+.
T Consensus         2 ~~v~l~C~~~g~P~p~v~W~~~~~~~~~---~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~a~N~   64 (78)
T cd05743           2 ETVEFTCVATGVPTPIINWRLNWGHVPD---SARVSITS---EGGYGTLTIRDVKESDQGAYTCEAINT   64 (78)
T ss_pred             CEEEEEEEEEEecCCEEEEEECCeECCC---CCCEEEEE---CCCEEEEEECCCChHHCEEEEEEEEec
Confidence            4678889999999999999998753221   22443322   134678999999999999999999764

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.17  E-value=4.2e-11  Score=70.68  Aligned_cols=57  Identities=21%  Similarity=0.204  Sum_probs=43.2

Q ss_pred             eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+.|.+.|.|.|.+.|+|++.+. ... ..+...       ...+|.|.+++.+|+|.|.|.+.+.
T Consensus         2 ~l~c~v~g~P~P~v~W~kdg~~l-~~~-~~~~~~-------~~~~L~I~~v~~~D~G~YtC~a~~~   58 (72)
T cd07702           2 RLTPKVKAFPAPEVIWLKDGLPA-AEK-CSRYHV-------DGYSLVIKDVTEEDAGIYTILLGIK   58 (72)
T ss_pred             eEEeeEEEcCCCeEEEEECCEEC-CCC-CcEEEe-------CCCEEEECcCCHHHCEEEEEEEEcc
Confidence            46788899999999999998542 211 123332       1458999999999999999999864

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.17  E-value=1.5e-10  Score=70.90  Aligned_cols=63  Identities=25%  Similarity=0.344  Sum_probs=49.0

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+..+.+.|.+.|.|.|.+.|+|++... ...  .++..       .+..|.|.+++.+|+|.|.|.|.|.
T Consensus        13 ~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~-~~~--~~~~~-------~~~~L~I~~v~~~D~G~Y~C~A~N~   75 (88)
T cd05851          13 ALKGQNVTLECFALGNPVPVIRWRKILEPM-PAT--AEISM-------SGAVLKIFNIQPEDEGTYECEAENI   75 (88)
T ss_pred             EeCCCcEEEEEEecccCCCEEEEEECCcCC-CCC--CEEec-------CCCEEEECcCChhhCEEEEEEEEcC
Confidence            346788999999999999999999987542 111  22221       2568999999999999999999864

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.17  E-value=9.9e-11  Score=69.12  Aligned_cols=60  Identities=18%  Similarity=0.223  Sum_probs=47.0

Q ss_pred             cceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.+.|.+.|.|.|.+.|+|++... .  ...|+.+.      .+++|.|.+++.+|+|.|.|.+.+.
T Consensus         2 ~~v~L~C~~~g~P~p~v~W~k~~~~~-~--~~~~~~~~------~~~~L~i~~v~~~D~G~Y~C~a~N~   61 (73)
T cd04969           2 GDVIIECKPKAAPKPTISWSKGTELL-T--NSSRICIW------PDGSLEILNVTKSDEGKYTCFAENF   61 (73)
T ss_pred             CeEEEEEeeeEcCCCEEEEEECCEEc-c--cCCCEEEC------CCCeEEEccCChhHCEEEEEEEECC
Confidence            35678899999999999999997542 1  23455552      3578999999999999999999864

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.16  E-value=4.8e-11  Score=69.49  Aligned_cols=52  Identities=17%  Similarity=0.256  Sum_probs=42.0

Q ss_pred             eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+.|.+.|.|.|.+.|||++.. +.    .+         .....|.|.++..+|+|.|.|.+.|.
T Consensus         2 ~l~c~v~g~P~P~v~W~kdg~~-l~----~~---------~~~~~L~i~~v~~~D~G~YtC~a~N~   53 (67)
T cd05863           2 KLPVKVAAYPPPEFQWYKDGKL-IS----GK---------HSQHSLQIKDVTEASAGTYTLVLWNS   53 (67)
T ss_pred             EEEEEEEEeCCCEEEEEECCEE-Cc----cc---------CCcCEEEECCCCHHHCEEEEEEEEEC
Confidence            4678889999999999999854 21    11         23678999999999999999999853

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.16  E-value=1.6e-10  Score=68.96  Aligned_cols=59  Identities=20%  Similarity=0.321  Sum_probs=44.3

Q ss_pred             eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+.|.+.|.|.|.+.|+|++.. +... ..+..+.     ....+|.|.+++.+|+|.|.|.+.+.
T Consensus         2 ~L~C~~~g~P~p~v~W~k~g~~-l~~~-~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~C~a~N~   60 (77)
T cd05760           2 TLRCHIDGHPRPTYQWFRDGTP-LSDG-QGNYSVS-----SKERTLTLRSAGPDDSGLYYCCAHNA   60 (77)
T ss_pred             EEEEEeeecCCCcEEEEECCEE-CCCC-CccEEEe-----CCCCEEEEeeCCcccCEEEEEEEEeC
Confidence            5678888999999999998754 2211 1233332     22568999999999999999999863

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.15  E-value=1.4e-10  Score=68.15  Aligned_cols=58  Identities=16%  Similarity=0.197  Sum_probs=44.5

Q ss_pred             eeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           14 LSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        14 ~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +.+.|-+.|.|.|.+.|+|++.....   ..++.+.      .++.|.|.+++.+|+|.|.|.|.|.
T Consensus         2 v~l~C~~~G~P~p~v~W~k~g~~~~~---~~~~~~~------~~~~l~i~~v~~~D~G~Y~C~A~N~   59 (71)
T cd05723           2 VIFECEVTGKPTPTVKWVKNGDMVIP---SDYFKIV------KEHNLQVLGLVKSDEGFYQCIAEND   59 (71)
T ss_pred             EEEEEEEEEeCCCEEEEEECCeECCC---CCCEEEE------ecCCEEEEcCCcccCEEEEEEEEcC
Confidence            56789899999999999999854321   1234432      2567899999999999999999863

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.15  E-value=2.5e-10  Score=67.51  Aligned_cols=61  Identities=16%  Similarity=0.187  Sum_probs=46.3

Q ss_pred             eeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           14 LSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        14 ~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +.+-|.+.|.|.|.+.|++++... .  ...|+.+..   ......|.|.+++.+|+|.|.|.+.|.
T Consensus         2 ~~l~c~~~G~P~p~v~W~k~g~~l-~--~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N~   62 (74)
T cd05748           2 VRLEVPISGRPTPTVTWSKDGKPL-K--LSGRVQIET---TASSTSLVIKNAERSDSGKYTLTLKNP   62 (74)
T ss_pred             EEEEeeEeeeCCCeEEEEECCEEc-C--CCCeEEEEE---CCCeEEEEECCCCcCcCEEEEEEEECC
Confidence            567788999999999999997542 1  223444422   134788999999999999999999853

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.14  E-value=1.5e-10  Score=68.96  Aligned_cols=62  Identities=11%  Similarity=0.116  Sum_probs=45.3

Q ss_pred             cceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .++.+.|.+.|.|.|.++|++++... ......+...      .....|.|.+++.+|+|.|+|.|.+.
T Consensus         2 ~~~~l~C~a~G~P~P~i~W~k~g~~i-~~~~~~~~~~------~~~~~l~i~~v~~~D~G~Y~C~A~N~   63 (76)
T cd05868           2 EDGTLICRANGNPKPSISWLTNGVPI-EIAPTDPSRK------VDGDTIIFSKVQERSSAVYQCNASNE   63 (76)
T ss_pred             CCEEEEEEeeEeCCCeEEEEECCEEc-cccCCCceEE------ecCCEEEECCCCHhhCEEEEEEEEcC
Confidence            56788999999999999999987542 2111111111      11458999999999999999999763

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.13  E-value=6e-10  Score=65.80  Aligned_cols=63  Identities=21%  Similarity=0.246  Sum_probs=44.6

Q ss_pred             eeeEEeecC-CCccEEEEecCCCCcccccccce-EEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           14 LSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGR-ISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        14 ~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R-~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +.+.|.+.| .|.|.+.|+|++... ......+ ..+..   .....+|.|.+++.+|+|.|.|.+.+.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l-~~~~~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N~   65 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKEL-NRKNKPRNIKIRN---KKKNSELQINKAKLADSGEYTCVVENI   65 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeec-cccCCcceEEEEe---cCceEEEEEccCCcccCeEEEEEEEEc
Confidence            357899998 999999999987542 2111111 11211   123678999999999999999999864

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.13  E-value=1.2e-10  Score=68.57  Aligned_cols=55  Identities=20%  Similarity=0.234  Sum_probs=42.9

Q ss_pred             eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      .+.|.+.|.|.|.+.|+|++.. +...  .+..       ....+|.|.+++.+|+|.|.|.+.+
T Consensus         2 ~l~c~v~g~P~p~v~W~k~g~~-l~~~--~~~~-------~~~~~L~I~~v~~~D~G~YtC~a~N   56 (71)
T cd04976           2 RLPVKVKAYPPPEIQWYKNGKL-ISEK--NRTK-------KSGHSLTIKDVTEEDAGNYTVVLTN   56 (71)
T ss_pred             EEEeEEEEeCCCEEEEEECCEE-CCCC--CEEE-------cCCCEEEECcCCHHHCEEEEEEEEc
Confidence            4678889999999999998754 2222  2222       2367899999999999999999985

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.13  E-value=2.6e-10  Score=66.56  Aligned_cols=56  Identities=20%  Similarity=0.372  Sum_probs=43.9

Q ss_pred             eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+.|-+.|.|.|.+.|+|++...    ..+|....      ...+|.|.+++.+|+|.|.|.+.+.
T Consensus         2 ~l~C~~~g~P~p~v~W~k~~~~~----~~~~~~~~------~~~~L~I~~v~~~D~G~Y~C~a~N~   57 (69)
T cd05725           2 EFQCEVGGDPVPTVLWRKEDGEL----PKGRAEIL------DDKSLKIRNVTAGDEGSYTCEAENM   57 (69)
T ss_pred             EEEEECccCCCCEEEEEECCccC----CCCcEEEe------eCCEEEECcCChhHCEEEEEEEEcC
Confidence            46788889999999999986532    22344442      2668999999999999999999763

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.12  E-value=3e-10  Score=70.87  Aligned_cols=71  Identities=23%  Similarity=0.337  Sum_probs=52.1

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC-Cccc---ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP-THEA---EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~-~~~~---~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +...+..+.+.|-+.|.|.|.+.|++... ..+.   ....+|+.+..   ..+..+|.|.+++.+|+|.|.|.|.+.
T Consensus        12 ~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~---~~~~~~L~I~~v~~~D~G~Y~C~A~N~   86 (98)
T cd05870          12 TTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKG---QHGESSLHIKDVKLSDSGRYDCEAASR   86 (98)
T ss_pred             EEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEee---cCCeeEEEEeeCCcCCCEEEEEEEecc
Confidence            34567889999999999999999998632 1111   12345666532   134678999999999999999999853

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.12  E-value=3.8e-10  Score=69.29  Aligned_cols=63  Identities=19%  Similarity=0.352  Sum_probs=46.9

Q ss_pred             cceeeEEeecCCCccEEEEecCCCCccc-----ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           12 QMLSVGDFADDEDIPVYIWYDSYPTHEA-----EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~-----~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.+.|-+.|.|.|.+.|+|++...+.     .....|+.+.      .+++|.|.+++.+|+|.|+|.+.+.
T Consensus         2 ~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~------~~~~L~I~~v~~~D~G~Y~C~a~N~   69 (90)
T cd05726           2 RTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS------QTGDLTITNVQRSDVGYYICQTLNV   69 (90)
T ss_pred             CEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC------CCCeEEEeeCChhhCEEEEEEEEcC
Confidence            4567889888999999999998643210     1123455542      2568999999999999999999863

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.11  E-value=3.2e-10  Score=70.34  Aligned_cols=64  Identities=20%  Similarity=0.197  Sum_probs=48.0

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccC-CCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIR-ESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~-~~D~G~Y~C~~~~~   80 (145)
                      +.+.++.+.|-+.|.|.|.++|+|++.. +...-..|..+       .+++|.|.++. .+|+|.|+|.|.|.
T Consensus        17 ~~g~~v~l~C~~~G~P~P~i~W~k~g~~-l~~~~~~~~~~-------~~g~L~i~~~~~~~D~G~Y~C~A~N~   81 (94)
T cd05848          17 SDEKKVILNCEARGNPVPTYRWLRNGTE-IDTESDYRYSL-------IDGNLIISNPSEVKDSGRYQCLATNS   81 (94)
T ss_pred             CCCCEEEEEEEeeecCCCEEEEEECCeE-CccCCCceEEe-------eCCeEEEccCCccCcCEEEEEEEEcC
Confidence            4467889999999999999999998754 22221223332       25789999985 69999999999864

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.11  E-value=4.7e-10  Score=67.71  Aligned_cols=64  Identities=11%  Similarity=0.067  Sum_probs=43.3

Q ss_pred             eEEeecCCCccEEEEecCCCCcccccccceEEEecC--CCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           16 VGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDK--ESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        16 ~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~--~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +-|-++|.|.|.++|||++....... ..+......  ......+.|.|.+++.+|+|.|+|.|.|.
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~   68 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESD-YIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNE   68 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCC-ceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeC
Confidence            45667899999999999985432222 111111110  01233678999999999999999999864

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.11  E-value=4.4e-10  Score=67.38  Aligned_cols=63  Identities=14%  Similarity=0.189  Sum_probs=45.3

Q ss_pred             cceeeEEeecCCCccEEEEecCCCC----cccc-cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           12 QMLSVGDFADDEDIPVYIWYDSYPT----HEAE-EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        12 ~~~~~~~w~~g~p~p~~~w~k~~~~----~~~~-~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.+.|.+.|.|.|.+.|||+...    .+.+ .+..++..      ...++|.|.+++.+|+|.|+|.+.+.
T Consensus         2 ~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~------~~~~~L~I~~~~~~D~G~Y~C~a~N~   69 (81)
T cd05765           2 ETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVV------TNIGQLVIYNAQPQDAGLYTCTARNS   69 (81)
T ss_pred             CcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEE------ccccEEEEccCCcccCEEEEEEEecC
Confidence            4678899999999999999997421    1111 11122222      23578999999999999999999864

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.11  E-value=1.4e-10  Score=68.14  Aligned_cols=55  Identities=15%  Similarity=0.117  Sum_probs=42.3

Q ss_pred             eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+-|.+.|.|.|.+.|||++... ...  .++.        ....|.|.++..+|+|.|.|.+.|.
T Consensus         2 ~~~c~v~G~P~P~v~W~k~g~~l-~~~--~~~~--------~~~~L~I~~v~~~D~G~YtC~a~N~   56 (70)
T cd05864           2 KIPVKYYGYPPPEVKWYKNGQLI-VLN--HTFK--------RGVHLTIYEVTEKDAGNYTVVLTNP   56 (70)
T ss_pred             EEEeEEEEeCCCEEEEEECCEEC-CCC--CEEc--------cCCEEEECcCCHHHCEEEEEEEEEC
Confidence            35688899999999999998542 221  1221        2567999999999999999999864

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>KOG4222|consensus

Probab=99.11  E-value=6.1e-10  Score=92.38  Aligned_cols=114  Identities=26%  Similarity=0.306  Sum_probs=79.4

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCccccc-ccceEEEecCCCCCCeeeEEEccc----C-CCCCEEEEEEEEEecC
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEE-YKGRISRVDKESPFGMASLNLTKI----R-ESDQGWYECKVVFLNR   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~-~~~R~~~~~~~~~~~~~sL~I~~v----~-~~D~G~Y~C~~~~~~~   82 (145)
                      +-..|...=|-+.|.|.|.|.|||++......+ -.-|+.       ..+++|.+..+    + ..|.|.|+|.+.+...
T Consensus        44 s~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~-------lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g  116 (1281)
T KOG4222|consen   44 SKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFL-------LPDGSLFLLRLAHGKKAGHDHGVYSCVASNRLG  116 (1281)
T ss_pred             cCCCCceeecCCCCCCCCceecccCCcccCCCCCCCccee-------cCCccEEEEecccCCcccCCCceeEeeecCccc
Confidence            445566667888899999999999985322222 222433       23677666433    1 3399999999954320


Q ss_pred             --------------------CC--CCCCCCcEEEEEEe--------------------------EEecCCcEEEEcccCC
Q psy534           83 --------------------SP--NSHKNGTWFHLDVH--------------------------GVFNDGTELRISNIRS  114 (145)
Q Consensus        83 --------------------~~--~~~~~g~~~~l~c~--------------------------~~~~~~~~L~i~~v~~  114 (145)
                                          .+  .....|+.+.|.|.                          ....+++.|.|.+++.
T Consensus       117 ~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrk  196 (1281)
T KOG4222|consen  117 EAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRK  196 (1281)
T ss_pred             eeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEecccc
Confidence                                11  23456999999997                          0123455899999999


Q ss_pred             CCCeeeEEEEecCCC
Q psy534          115 QDIGDYTCLATHVLY  129 (145)
Q Consensus       115 ~d~G~Y~C~a~n~~g  129 (145)
                      +|+|.|.|+|.|.+|
T Consensus       197 sD~GtY~CVatNmvG  211 (1281)
T KOG4222|consen  197 SDEGTYACVATNMVG  211 (1281)
T ss_pred             CCCceeeeeeccccc
Confidence            999999999999999

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.10  E-value=2.9e-10  Score=67.40  Aligned_cols=62  Identities=16%  Similarity=0.167  Sum_probs=45.7

Q ss_pred             cceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.+.|-+.|.|.|.+.|++++..... ....+...      .....|.|.+++.+|+|.|+|.|.+.
T Consensus         2 ~~~~l~C~~~g~P~p~i~W~~~g~~~~~-~~~~~~~~------~~~~~L~i~~v~~~D~G~Y~C~A~N~   63 (76)
T cd04978           2 ETGRLDCEAEGIPQPTITWRLNGVPIEE-LPPDPRRR------VDGGTLILSNVQPNDTAVYQCNASNV   63 (76)
T ss_pred             CeEEEEEEceeeCCCEEEEEECCEECCC-CCCcceEE------ccCCEEEECCCChhhCEEEEEEEEcc
Confidence            4577889999999999999998754221 11111111      23688999999999999999999753

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.10  E-value=3.4e-10  Score=69.80  Aligned_cols=64  Identities=16%  Similarity=0.190  Sum_probs=51.1

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +...+.++.+.|-+.|. .|.+.|+|++...    ..+|+.+.     ....+|.|.+++++|+|.|+|.|.+.
T Consensus        14 ~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l----~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~N~   77 (91)
T cd05740          14 PPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLL----VPPRLQLS-----NDNRTLTFNNVTRSDTGHYQCEASNE   77 (91)
T ss_pred             ccccCCcEEEEEEeCCC-CCEEEEEECCEEC----CCCCEEEe-----CCCCEEEECcCChhhCEEEEEEEEcC
Confidence            56778899999999999 9999999997542    22445442     23578999999999999999999853

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.10  E-value=1.5e-10  Score=72.81  Aligned_cols=75  Identities=15%  Similarity=0.104  Sum_probs=53.2

Q ss_pred             chHHHhhhccceeeEEeecC-CCccEEEEecCCCCcccccccceEEEecCC--CCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            3 NSFAVKSIFQMLSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGRISRVDKE--SPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         3 ~~~~~~~~~~~~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~--~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      +.......+.++.+.|-+.| .|+|.+.|+|++.+. ....  +......+  ......+|.|.+++++|+|.|+|.|.|
T Consensus        10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i-~~~~--~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N   86 (101)
T cd04975          10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTL-TNKL--TEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASN   86 (101)
T ss_pred             CceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeC-CCCc--ceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEEC
Confidence            44556677888999999999 899999999998543 2221  11111110  011257899999999999999999985


Q ss_pred             e
Q psy534           80 L   80 (145)
Q Consensus        80 ~   80 (145)
                      .
T Consensus        87 ~   87 (101)
T cd04975          87 S   87 (101)
T ss_pred             C
Confidence            3

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=99.09  E-value=6.9e-10  Score=69.33  Aligned_cols=66  Identities=21%  Similarity=0.332  Sum_probs=51.0

Q ss_pred             eeeEEeecCCCccEEEEecCCCCc---ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           14 LSVGDFADDEDIPVYIWYDSYPTH---EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        14 ~~~~~w~~g~p~p~~~w~k~~~~~---~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.|.+..+.+.+.||+++...   ...+|++|+.+..+....++.+|.|.+++.+|+|.|+|.+.+
T Consensus        18 ~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~   86 (100)
T cd05713          18 HMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQS   86 (100)
T ss_pred             eeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEEEEEEec
Confidence            345779998777788888765432   335688999886554556789999999999999999999974

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.08  E-value=7.6e-10  Score=68.54  Aligned_cols=70  Identities=20%  Similarity=0.348  Sum_probs=51.8

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccc--cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAE--EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~--~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|.+.|.|.|.+.|++++......  ...+|+....   ......|.|.+++.+|+|.|.|.+.+.
T Consensus        13 ~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~a~N~   84 (96)
T cd05732          13 AVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRG---HARVSSLTLKDVQLTDAGRYDCEASNR   84 (96)
T ss_pred             EecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeC---CccEEEEEECcCCcCcCEEeEEEEEeC
Confidence            345678899999999999999999987432211  1234554422   133678999999999999999999864

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.08  E-value=8.6e-10  Score=68.66  Aligned_cols=68  Identities=24%  Similarity=0.320  Sum_probs=49.9

Q ss_pred             hccceeeEEeecCCCccEEEEecCCCCcccc--cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAE--EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~--~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+..+.+.|.+.|.|.|.+.|++++......  ...+|+.+...   ...+.|.|.+++.+|+|.|.|.|.+.
T Consensus        16 ~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~---~~~~~L~I~~v~~~D~G~Y~C~A~N~   85 (97)
T cd05869          16 LEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSH---ARVSSLTLKYIQYTDAGEYLCTASNT   85 (97)
T ss_pred             cCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcC---ccEEEEEEecCccCcCEEEEEEEecC
Confidence            4577889999999999999999986432211  12345443221   23478999999999999999999764

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.07  E-value=6e-10  Score=68.39  Aligned_cols=67  Identities=12%  Similarity=0.047  Sum_probs=49.6

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|.+.|.|.|.+.|++++......   .+... .  ......+|.|.+++.+|.|.|.|.|.+.
T Consensus        12 v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~---~~~~~-~--~~~~~~~L~I~~v~~~D~g~Y~C~A~N~   78 (90)
T cd04972          12 VYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQT---RTDTL-E--TTVDIYNLQLSNITSETQTTVTCTAENP   78 (90)
T ss_pred             EcCCCcEEEEEEEEEcCCCeEEEEECCEEccCC---ccEEE-E--ecCCEEEEEEecCCcccCEEEEEEEECC
Confidence            456889999999999999999999998532111   11111 0  0123678999999999999999999853

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.06  E-value=1e-09  Score=65.53  Aligned_cols=60  Identities=15%  Similarity=0.190  Sum_probs=43.6

Q ss_pred             eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCC----CCCEEEEEEEEEe
Q psy534           15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRE----SDQGWYECKVVFL   80 (145)
Q Consensus        15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~----~D~G~Y~C~~~~~   80 (145)
                      .+.|-+.|.|.|.+.|+|++.. +......++...     ..+++|.|.+++.    +|+|.|.|.|.|.
T Consensus         2 ~l~C~~~G~P~P~v~W~k~g~~-l~~~~~~~~~~~-----~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~   65 (77)
T cd05733           2 VIKCEAKGNPPPTFSWTRNGTH-FDPEKDPRVTMK-----PDSGTLVIDNMNGGRAEDYEGEYQCYASNE   65 (77)
T ss_pred             EEEeeCcccCCCeEEEEECCeE-CCCCCCCCEEEe-----CCCCEEEEeccCCCCCcCCCEEEEEEEEcC
Confidence            4678888999999999998753 222223344432     2378899998854    7999999999864

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.06  E-value=1.2e-09  Score=67.17  Aligned_cols=69  Identities=12%  Similarity=0.089  Sum_probs=44.6

Q ss_pred             cceeeEEeecCCCccEEEEecCCC---CcccccccceEEEecC----CCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           12 QMLSVGDFADDEDIPVYIWYDSYP---THEAEEYKGRISRVDK----ESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        12 ~~~~~~~w~~g~p~p~~~w~k~~~---~~~~~~~~~R~~~~~~----~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.+.|.+.|.|.|.+.|+|++.   ..+...-..+...+..    ........|.|.+++.+|+|.|.|.|.+.
T Consensus         2 ~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~   77 (90)
T cd04974           2 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNS   77 (90)
T ss_pred             CcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecc
Confidence            456788999999999999999641   1111110111111110    01123468999999999999999999864

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.05  E-value=8e-10  Score=68.15  Aligned_cols=69  Identities=16%  Similarity=0.056  Sum_probs=50.7

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +...+..+.+.|-+.|.|.|.+.|+|++.. +.  ...++.+...  .....+|.|.+++.+|+|.|.|.+.+.
T Consensus        12 ~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~-l~--~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~   80 (92)
T cd05737          12 TIMEGKTLNLTCTVFGDPDPEVSWLKNDQA-LA--LSDHYNVKVE--QGKYASLTIKGVSSEDSGKYGIVVKNK   80 (92)
T ss_pred             EEeCCCcEEEEEEEEecCCCeEEEEECCEE-Cc--cCCCEEEEEc--CCCEEEEEEccCChhhCEEEEEEEEEC
Confidence            345677889999999999999999999754 22  2233333211  012468999999999999999999863

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=99.05  E-value=6.2e-10  Score=70.94  Aligned_cols=66  Identities=24%  Similarity=0.249  Sum_probs=52.4

Q ss_pred             eeeEEeecCC-----CccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           14 LSVGDFADDE-----DIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        14 ~~~~~w~~g~-----p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.|.+..     ....+.++.++.....++|++|+++..++...++.+|+|++++.+|+|.|+|.+..
T Consensus        23 ~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~   93 (110)
T cd05902          23 GPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVL   93 (110)
T ss_pred             CCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEE
Confidence            3677898843     23445677776555678999999998766677899999999999999999999974

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.04  E-value=5.7e-10  Score=69.08  Aligned_cols=63  Identities=24%  Similarity=0.247  Sum_probs=47.1

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccC-CCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIR-ESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~-~~D~G~Y~C~~~~~   80 (145)
                      ....++.+-|.+.|.|.|.++|+|++... .. ...|..+       .+++|.|.++. .+|+|.|.|.|.|.
T Consensus        17 ~~~~~v~l~C~a~G~P~P~i~W~k~~~~i-~~-~~~~~~~-------~~g~L~I~~~~~~~D~G~Y~C~A~N~   80 (93)
T cd05849          17 STEGKVSVNCRARANPFPIYKWRKNNLDI-DL-TNDRYSM-------VGGNLVINNPDKYKDAGRYVCIVSNI   80 (93)
T ss_pred             ccCCeEEEeCcCccCCCCEEEEEECCEEc-cC-CCCeEEE-------ECCEEEECcCCcCCCCEEEEEEEEeC
Confidence            33456888899999999999999997542 11 1234433       26789999985 69999999999864

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.04  E-value=1.1e-09  Score=65.02  Aligned_cols=60  Identities=17%  Similarity=0.299  Sum_probs=45.7

Q ss_pred             eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+.|-+.|.|.|.+.|+|++.. +......++....     ....|.|.+++.+|+|.|.|.+.+.
T Consensus         2 ~L~C~v~g~P~p~v~W~k~~~~-l~~~~~~~~~~~~-----~~~~l~I~~~~~~D~G~Y~C~a~N~   61 (76)
T cd05736           2 SLRCHAEGIPLPRLTWLKNGMD-ITPKLSKQLTLIA-----NGSELHISNVRYEDTGAYTCIAKNE   61 (76)
T ss_pred             EeEeEeeecCCCEEEEEECCEE-CCCCCCccEEEeC-----CCCEEEECcCCcccCEEEEEEEEcC
Confidence            4678888999999999999754 3334445555432     2457999999999999999999853

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.03  E-value=9.6e-10  Score=68.14  Aligned_cols=62  Identities=16%  Similarity=0.185  Sum_probs=46.1

Q ss_pred             ccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccC-CCCCEEEEEEEEEe
Q psy534           11 FQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIR-ESDQGWYECKVVFL   80 (145)
Q Consensus        11 ~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~-~~D~G~Y~C~~~~~   80 (145)
                      +..+.+.|.+.|+|.|.++|++++... ......+..+       .+++|.|.++. .+|+|.|+|.|.|.
T Consensus        19 g~~v~l~C~a~g~P~p~i~W~~~g~~l-~~~~~~~~~~-------~~g~L~I~~~~~~~D~G~Y~C~A~N~   81 (94)
T cd05850          19 EEKVTLGCRARASPPATYRWKMNGTEI-KFAPESRYTL-------VAGNLVINNPQKARDAGSYQCLAINR   81 (94)
T ss_pred             CCeEEEEeEceeCCCCEEEEEECCEEC-ccCCCceEEE-------ECCeEEEccCCccCcCEEEEEEEEcC
Confidence            457889999999999999999987542 2112233333       15789998865 69999999999864

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.03  E-value=5.1e-10  Score=67.09  Aligned_cols=65  Identities=17%  Similarity=0.220  Sum_probs=48.8

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|.+.|.|.|.+.|++++.......   ....     .....+|.|.+++.+|+|.|.|.+.+.
T Consensus         6 ~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~---~~~~-----~~~~~~L~i~~v~~~D~G~Y~C~a~N~   70 (82)
T cd05856           6 RPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTE---IGES-----RKKKWTLSLKNLKPEDSGKYTCHVSNR   70 (82)
T ss_pred             ccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCc---ccee-----cCceEEEEEccCChhhCEEEEEEEEcC
Confidence            4567789999999999999999999875422111   1111     123678999999999999999999753

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.03  E-value=1e-09  Score=67.81  Aligned_cols=67  Identities=16%  Similarity=0.115  Sum_probs=49.5

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+..+.+-|.+.|.|. .+.||+.++..+..  ..|+.+..+   ....+|.|.+++.+|+|.|+|.|.+.
T Consensus        12 v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~--~~r~~~~~~---g~~~~L~I~~v~~~D~G~Y~C~A~N~   78 (92)
T cd05866          12 LSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVS--SQRVVVQKE---GVRSRLTIYNANIEDAGIYRCQATDA   78 (92)
T ss_pred             EcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecC--CCCEEEEeC---CCeeEEEEecCChHHCEEEEEEEEcC
Confidence            456788999999999998 89999864432322  245554321   12458999999999999999999864

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.03  E-value=2.3e-09  Score=66.76  Aligned_cols=69  Identities=19%  Similarity=0.129  Sum_probs=48.9

Q ss_pred             hhhccceeeEEeecCCCc-cEEEEec-CCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDI-PVYIWYD-SYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~-p~~~w~k-~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|-+.|.|. |.+.|++ ++.. +... ..|+....+  ....++|.|.+++.+|+|.|+|.|.|.
T Consensus        12 v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~-l~~~-~~r~~v~~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~   82 (96)
T cd05865          12 ISVGESKFFLCQVAGEAKDKDISWFSPNGEK-LTPN-QQRISVVRN--DDYSSTLTIYNANIDDAGIYKCVVSNE   82 (96)
T ss_pred             ECCCCeEEEEEEEeCCCCCCEEEEECCCCcC-cccc-CCeEEEEeC--CCCceEEEEeccChhhCEEEEEEEEcC
Confidence            456778899999999985 7999998 4532 2211 224443221  112478999999999999999999864

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.03  E-value=6.3e-10  Score=68.88  Aligned_cols=67  Identities=13%  Similarity=0.148  Sum_probs=50.5

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +...+..+.+.|.+.|.|.|.+.|++++.. +... ..+..+..     ....|.|.+++.+|+|.|.|.+.+.
T Consensus        14 ~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~-~~~~-~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~   80 (95)
T cd05730          14 TANLGQSVTLACDADGFPEPTMTWTKDGEP-IESG-EEKYSFNE-----DGSEMTILDVDKLDEAEYTCIAENK   80 (95)
T ss_pred             EEeCCCCEEEEEeccEeCCCEEEEEECCEE-CcCC-CCEEEEeC-----CCCEEEECCCChhhCEEEEEEEEcC
Confidence            345678899999999999999999998754 2211 23443321     2457999999999999999999853

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>KOG4194|consensus

Probab=99.02  E-value=3.7e-09  Score=83.50  Aligned_cols=128  Identities=20%  Similarity=0.242  Sum_probs=82.7

Q ss_pred             hccceeeEEeecC--CCccEEEEecCCCCcccccccceEEEecC-------CCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFADD--EDIPVYIWYDSYPTHEAEEYKGRISRVDK-------ESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~g--~p~p~~~w~k~~~~~~~~~~~~R~~~~~~-------~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ++..+...|-+-+  ..+-++.|-+++....+....+-+++...       +.....+.|.+.||+..|.|.|+|.+.+-
T Consensus       517 ~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~  596 (873)
T KOG4194|consen  517 IGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNH  596 (873)
T ss_pred             hccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecc
Confidence            3455666777765  34557889888753222222222222111       11122567999999999999999999653


Q ss_pred             cC--------------------CCC-CCCCCcEEEEEEeE---------------------------EecCCcEEEEccc
Q psy534           81 NR--------------------SPN-SHKNGTWFHLDVHG---------------------------VFNDGTELRISNI  112 (145)
Q Consensus        81 ~~--------------------~~~-~~~~g~~~~l~c~~---------------------------~~~~~~~L~i~~v  112 (145)
                      -.                    |.+ +...|+...|.|..                           ...++..+.|.+|
T Consensus       597 FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnv  676 (873)
T KOG4194|consen  597 FGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNV  676 (873)
T ss_pred             cCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecc
Confidence            10                    111 12358888889971                           1234457899999


Q ss_pred             CCCCCeeeEEEEecCCC-----CcEEEEeC
Q psy534          113 RSQDIGDYTCLATHVLY-----PDLLVVLG  137 (145)
Q Consensus       113 ~~~d~G~Y~C~a~n~~g-----~~~~v~~~  137 (145)
                      +.+|+|.|+|.|+|.+|     ..++|..-
T Consensus       677 k~eD~GiYtC~A~n~AG~isanAtL~V~e~  706 (873)
T KOG4194|consen  677 KIEDQGIYTCTAQNVAGQISANATLTVLET  706 (873)
T ss_pred             cccccceeEEeeeccccceeeceEEEEecC
Confidence            99999999999999998     55555544

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.02  E-value=1.8e-09  Score=64.45  Aligned_cols=60  Identities=12%  Similarity=0.170  Sum_probs=42.6

Q ss_pred             eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCC----CCCEEEEEEEEEe
Q psy534           15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRE----SDQGWYECKVVFL   80 (145)
Q Consensus        15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~----~D~G~Y~C~~~~~   80 (145)
                      .+.|-+.|.|.|.+.|+|++.. +......+..+.     ..+++|.|..++.    .|.|.|+|.|.+.
T Consensus         2 ~l~C~a~G~P~P~i~W~k~g~~-l~~~~~~~~~~~-----~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~   65 (77)
T cd05874           2 VIQCEAKGKPPPSFSWTRNGTH-FDIDKDPKVTMK-----PNTGTLVINIMNGEKAEAYEGVYQCTARNE   65 (77)
T ss_pred             EEEeeCcccCCCeEEEEECCeE-CCCcCCCCEEEe-----CCCceEEEeccccCCCCCCCEEEEEEEEcC
Confidence            4678888999999999998753 222222333332     2368899988764    4889999999863

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.02  E-value=1.4e-09  Score=64.26  Aligned_cols=61  Identities=15%  Similarity=0.194  Sum_probs=45.2

Q ss_pred             cceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.+.|.+.|.|.|.+.|++.+...+...  .|...      ..+++|.|.+++.+|+|.|.|.+.+.
T Consensus         2 ~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~--~~~~~------~~~~~L~i~~~~~~D~G~Y~C~a~N~   62 (74)
T cd05764           2 QRATLRCKARGDPEPAIHWISPDGKLISNS--SRTLV------YDNGTLDILITTVKDTGSFTCIASNA   62 (74)
T ss_pred             CeEEEEEEccCcCCCEEEEEeCCCEEecCC--CeEEE------ecCCEEEEEECChhhCEEEEEEEECC
Confidence            457788999999999999997543322211  23333      23678999999999999999999853

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.02  E-value=7.9e-10  Score=64.58  Aligned_cols=57  Identities=18%  Similarity=0.184  Sum_probs=43.2

Q ss_pred             eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+.|-+.|.|.|.+.|++++....    .++....     .....|.|.+++.+|+|.|.|.+.+.
T Consensus         2 ~l~C~~~g~P~p~v~W~k~~~~~~----~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~   58 (71)
T cd05731           2 LLECIAEGLPTPEISWIKIGGELP----ADRTKFE-----NFNKTLKIDNVSEEDDGEYRCTASNS   58 (71)
T ss_pred             EEEEEeeEecCCeEEEEECCeECC----CCceeEe-----cCCCEEEECCCCHHHCEEEEEEEEeC
Confidence            567888899999999999875321    1222221     23678999999999999999999864

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.02  E-value=1.4e-09  Score=67.98  Aligned_cols=66  Identities=12%  Similarity=0.023  Sum_probs=50.4

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.++.+.|-+.|.|.|.+.|+|++... ..  ..|+++...   .....|.|.++.++|+|.|.|.+.|.
T Consensus        13 ~~G~~v~l~C~~~G~p~p~v~W~kdg~~l-~~--~~~~~~~~~---~~~s~L~I~~~~~~D~G~Ytc~a~N~   78 (98)
T cd05762          13 RAGESVELFCKVTGTQPITCTWMKFRKQI-QE--GEGIKIENT---ENSSKLTITEGQQEHCGCYTLEVENK   78 (98)
T ss_pred             ECCCEEEEEEEEcccCCCceEEEECCEEe-cC--CCcEEEEec---CCeeEEEECCCChhhCEEEEEEEEcC
Confidence            45678889999999999999999998543 21  124443321   23678999999999999999999753

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.01  E-value=3.5e-10  Score=71.09  Aligned_cols=71  Identities=14%  Similarity=0.151  Sum_probs=48.7

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCC--CCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKES--PFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~--~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ......+.+.|-+.|.|.|.+.|+|++.+.....  .+......+.  .....+|.|.+++.+|+|.|+|.|.|.
T Consensus        15 ~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~--~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~   87 (101)
T cd05859          15 ANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENL--TEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNE   87 (101)
T ss_pred             EecCCcEEEEEEEEEeCCCceEEEECCEECcCCc--ceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcC
Confidence            4455667888889999999999999986532211  1111101100  122478999999999999999999864

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.00  E-value=7.4e-10  Score=67.33  Aligned_cols=63  Identities=27%  Similarity=0.322  Sum_probs=49.9

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ....+.++.+.|-+.|.|.|.+.|++++.. +.  ...|+..       .+..|.|.+++.+|+|.|.|.+.+
T Consensus        10 ~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~-~~--~~~~~~~-------~~~~L~i~~~~~~D~G~Y~C~a~N   72 (85)
T cd05728          10 EADIGSSLRWECKASGNPRPAYRWLKNGQP-LA--SENRIEV-------EAGDLRITKLSLSDSGMYQCVAEN   72 (85)
T ss_pred             EEcCCCcEEEEEEeeEeCCCEEEEEECCEE-CC--CCCeEEE-------eCCEEEEeeCCHHHCEEEEEEEEC
Confidence            356678889999999999999999999854 22  1234443       256899999999999999999975

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.00  E-value=2.3e-09  Score=65.22  Aligned_cols=66  Identities=15%  Similarity=0.247  Sum_probs=44.6

Q ss_pred             ceeeEEeecCCCcc--EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           13 MLSVGDFADDEDIP--VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        13 ~~~~~~w~~g~p~p--~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+.+.|-+.|.|.|  .+.|++++..........+......  ....++|.|.+++.+|+|.|+|.|.+.
T Consensus         2 ~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~YtC~A~n~   69 (85)
T cd05854           2 NLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEV--KETIGDLVIVNAQLSHAGTYTCTAQTV   69 (85)
T ss_pred             cEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEe--cceEeEEEEccCChhhCeEEEEEEecC
Confidence            46788988899877  5899998754211111222221110  123579999999999999999999753

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=99.00  E-value=2e-09  Score=69.04  Aligned_cols=66  Identities=26%  Similarity=0.347  Sum_probs=52.9

Q ss_pred             eeeEEeecC------C--CccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           14 LSVGDFADD------E--DIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        14 ~~~~~w~~g------~--p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      -..|.|.+-      .  ....+.++.++.....++|++|+++..++...++.+|+|.+++.+|+|.|+|++..
T Consensus        27 ~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~  100 (117)
T cd05901          27 FLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMH  100 (117)
T ss_pred             CcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEEEEcccccccCEEEEEEEEE
Confidence            456778762      1  23566677777555678899999998777778899999999999999999999975

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.00  E-value=1.6e-09  Score=66.70  Aligned_cols=68  Identities=18%  Similarity=0.110  Sum_probs=50.5

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ....+..+.+.|-+.|.|.|.+.|++++.. +.  ...|+.+...   ...++|.|.+++.+|+|.|.|.+.+.
T Consensus        14 ~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~-l~--~~~~~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~N~   81 (92)
T cd05747          14 TVSEGESARFSCDVDGEPAPTVTWMREGQI-IV--SSQRHQITST---EYKSTFEISKVQMSDEGNYTVVVENS   81 (92)
T ss_pred             EEeCCCcEEEEEEEeecCCCEEEEEECCEE-CC--CCCcEEEEEc---CCeeEEEECCCCcccCEeEEEEEEcC
Confidence            345567788899999999999999998743 22  1234444221   23679999999999999999999763

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.00  E-value=2.8e-09  Score=63.63  Aligned_cols=60  Identities=15%  Similarity=0.108  Sum_probs=42.6

Q ss_pred             eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCC----CCCEEEEEEEEEe
Q psy534           15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRE----SDQGWYECKVVFL   80 (145)
Q Consensus        15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~----~D~G~Y~C~~~~~   80 (145)
                      .+.|-+.|.|.|.++|+|++.. +......|+.+.     ..+++|.|.++..    +|+|.|.|.|.|.
T Consensus         2 ~l~C~~~G~P~P~v~W~k~g~~-~~~~~~~~~~~~-----~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~   65 (77)
T cd05875           2 IIECEAKGNPVPTFQWTRNGKF-FNVAKDPRVSMR-----RRSGTLVIDFSGGGRPEDYEGEYQCFARNN   65 (77)
T ss_pred             EEEEeccccCCCEEEEEECCEE-ccCcCCCcEEEe-----CCCceEEEeccCCCCCCCCCEEEEEEEEec
Confidence            4678888999999999998753 211223344432     2378899998752    4799999999864

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.99  E-value=2.1e-09  Score=68.53  Aligned_cols=66  Identities=24%  Similarity=0.355  Sum_probs=47.3

Q ss_pred             eeeEEeecC--CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           14 LSVGDFADD--EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        14 ~~~~~w~~g--~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.|.+.  ...+.+.++.++.....++|++|+++..+....++.+|+|++++.+|+|.|+|.+..
T Consensus        26 ~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~sD~G~Y~C~v~~   93 (110)
T cd05878          26 SPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRSSDSGVYRCEVMH   93 (110)
T ss_pred             CCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCChhhCEEEEEEEEe
Confidence            355678772  222344444444334567899999986554556789999999999999999999975

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.99  E-value=2.2e-09  Score=65.54  Aligned_cols=63  Identities=24%  Similarity=0.325  Sum_probs=48.5

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+..+.+.|-+.|.|.|.+.|++++..... .  .+..       ..+++|.|.+++.+|+|.|.|.+.+.
T Consensus        13 ~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~-~--~~~~-------~~~~~L~i~~v~~~D~G~Y~C~a~N~   75 (88)
T cd04968          13 ALKGQNVTLECFALGNPVPQIKWRKVDGSMPS-S--AEIS-------MSGAVLKIPNIQFEDEGTYECEAENI   75 (88)
T ss_pred             EeCCCcEEEEEEeeEeCCCEEEEEECCCcCCC-c--cEEE-------EeCCEEEECCCCcccCEEEEEEEEEC
Confidence            34677889999999999999999998754221 1  1111       23689999999999999999999763

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>KOG4222|consensus

Probab=98.99  E-value=1.2e-09  Score=90.64  Aligned_cols=110  Identities=22%  Similarity=0.350  Sum_probs=76.1

Q ss_pred             CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-------------CC----
Q psy534           22 DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-------------SP----   84 (145)
Q Consensus        22 g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-------------~~----   84 (145)
                      |.|.|.++|.|++.+.... -..+.+++      ..+.|.|.|+.++|+|.|.|++.+...             .|    
T Consensus       158 ghpeptvSw~Kdg~pl~~~-~~~~~~li------sgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~  230 (1281)
T KOG4222|consen  158 GHPEPTVSWVKDGKPLDHY-DVPIIALI------SGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWK  230 (1281)
T ss_pred             CCCCCcceeecCCCccccc-cceeEEEe------cCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCcccc
Confidence            7889999999998653311 12234443      389999999999999999999977542             00    


Q ss_pred             ---CC-CCCCcEEEEEEe-----------------------EEecCCcEEEEcccCCCCCeeeEEEEecCCC-----CcE
Q psy534           85 ---NS-HKNGTWFHLDVH-----------------------GVFNDGTELRISNIRSQDIGDYTCLATHVLY-----PDL  132 (145)
Q Consensus        85 ---~~-~~~g~~~~l~c~-----------------------~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g-----~~~  132 (145)
                         +. ...|..+.+.|.                       ....+..+|+|.+++..|+|.|.|.|.|.+|     ..+
T Consensus       231 rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~l  310 (1281)
T KOG4222|consen  231 RPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATL  310 (1281)
T ss_pred             ccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccce
Confidence               11 112444555555                       1112325899999999999999999999998     566


Q ss_pred             EEEeCe
Q psy534          133 LVVLGS  138 (145)
Q Consensus       133 ~v~~~~  138 (145)
                      +|-...
T Consensus       311 tV~apP  316 (1281)
T KOG4222|consen  311 TVQAPP  316 (1281)
T ss_pred             EEecCc
Confidence            665443

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.99  E-value=2.7e-09  Score=64.59  Aligned_cols=65  Identities=18%  Similarity=0.273  Sum_probs=49.7

Q ss_pred             hhhccceeeEEee-cCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFA-DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~-~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|-+ .|.|.|.+.|+|++... ... ..|..+.      .+++|.|.+++.+|+|.|+|.+.+.
T Consensus         8 ~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~-~~~-~~~~~~~------~~~~L~I~~~~~~D~G~Y~C~a~N~   73 (86)
T cd05724           8 VAVGEMAVLECSPPRGHPEPTVSWRKDGQPL-NLD-NERVRIV------DDGNLLIAEARKSDEGTYKCVATNM   73 (86)
T ss_pred             EeCCCCEEEEEECCCCCCCCEEEEEECCEEC-CCC-CCCEEEc------cCCEEEEeECCcccCEEEEEEEEec
Confidence            4467788899987 69999999999987532 211 2344442      2678999999999999999999864

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.98  E-value=3.1e-09  Score=65.24  Aligned_cols=69  Identities=13%  Similarity=0.121  Sum_probs=44.2

Q ss_pred             cceeeEEeecCCCccEEEEecCC---CCcccccccceEEEecCC----CCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           12 QMLSVGDFADDEDIPVYIWYDSY---PTHEAEEYKGRISRVDKE----SPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        12 ~~~~~~~w~~g~p~p~~~w~k~~---~~~~~~~~~~R~~~~~~~----~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.+.|.+.|.|.|.+.|++..   +..+..+-..+..+....    ......+|.|.+++.+|+|.|+|.|.+.
T Consensus         2 ~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~   77 (90)
T cd05858           2 STVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNS   77 (90)
T ss_pred             CeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeC
Confidence            45778899999999999999853   111111111111111100    0112368999999999999999999864

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.97  E-value=6.2e-09  Score=63.70  Aligned_cols=67  Identities=16%  Similarity=0.183  Sum_probs=47.8

Q ss_pred             cceeeEEeecCCCccEEEEecCCCCcccccccceEEEecC-CCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDK-ESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~-~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.+.|-+.|.|.+.+.|++++.. +... ..|..+... .......+|.|.++..+|+|.|.|.|.|.
T Consensus         2 ~~~~l~C~~~g~p~~~i~W~k~~~~-i~~~-~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~   69 (88)
T cd05735           2 QKKEMSCTAHGEKPIIVRWEKEDRI-INPE-MSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINS   69 (88)
T ss_pred             CeEEEEEEEECCCCCEEEEeeCCEE-CCCC-CCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcC
Confidence            4577889999999999999998853 3222 234443221 01122478999999999999999999763

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.97  E-value=3.6e-09  Score=66.23  Aligned_cols=66  Identities=17%  Similarity=0.319  Sum_probs=47.3

Q ss_pred             cceeeEEeec---CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           12 QMLSVGDFAD---DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        12 ~~~~~~~w~~---g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+..+.|.+   +.....+.+...........|++|+++..  ...++++|.|++++.+|.|.|.|++.+
T Consensus        16 ~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~--~~~~daSi~i~nl~~~D~G~Y~C~v~t   84 (99)
T cd05886          16 VKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKN--PSFEDGTISLSRLELEDEGVYICEFAT   84 (99)
T ss_pred             CCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcC--CCCCcceEEEcCCccccCEEEEEEEEe
Confidence            3456788877   23334444443333445567999999864  235799999999999999999999975

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.96  E-value=2.2e-09  Score=66.53  Aligned_cols=73  Identities=14%  Similarity=0.102  Sum_probs=51.0

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcc-----------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHE-----------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~-----------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      +..+..+.+-|.+.+.+.+.+.||++++..+           ...+..|+.........++.+|.|.+++.+|+|.|+|.
T Consensus         4 ~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~   83 (94)
T cd07690           4 GKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICE   83 (94)
T ss_pred             eeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEEE
Confidence            4567788899999999999999996653210           11233444433221234577899999999999999999


Q ss_pred             EEEe
Q psy534           77 VVFL   80 (145)
Q Consensus        77 ~~~~   80 (145)
                      +.+.
T Consensus        84 v~~~   87 (94)
T cd07690          84 VEDK   87 (94)
T ss_pred             ECCc
Confidence            8643

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.96  E-value=7e-09  Score=61.54  Aligned_cols=64  Identities=17%  Similarity=0.197  Sum_probs=43.8

Q ss_pred             eeeEEeec-CCCccEEEEecCCCCccc-ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           14 LSVGDFAD-DEDIPVYIWYDSYPTHEA-EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        14 ~~~~~w~~-g~p~p~~~w~k~~~~~~~-~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +.+.|.+. +.|.+.+.||+++..... .....|.....   .....+|.|.+++.+|+|.|.|.+.+.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~---~~~~~~L~I~~~~~~DsG~Y~C~a~N~   66 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRK---KKKSSELQISKASLADNGEYKCMVSSK   66 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEe---CCcEEEEEECcCCcccCEEEEEEEEeC
Confidence            35778876 468889999998754221 11223333211   123678999999999999999999763

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.95  E-value=4.2e-09  Score=65.22  Aligned_cols=65  Identities=18%  Similarity=0.170  Sum_probs=48.5

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEccc-----CCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKI-----RESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v-----~~~D~G~Y~C~~~~~   80 (145)
                      ..+.++.+.|.+.|.|.|.+.|+|++.. +......+..+      ..+++|.|.++     +++|+|.|+|.+.+.
T Consensus        12 ~~g~~v~l~C~v~g~P~p~i~W~k~g~~-l~~~~~~~~~~------~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~   81 (95)
T cd05722          12 VRGGPVVLNCSAEGEPPPKIEWKKDGVL-LNLVSDERRQQ------LPNGSLLITSVVHSKHNKPDEGFYQCVAQND   81 (95)
T ss_pred             cCCCCEEEeeecccCCCCEEEEEECCeE-CccccCcceEE------ccCCeEEEeeeeccCCCCCcCEEEEEEEECC
Confidence            4567899999999999999999998754 33222233333      23567888877     689999999999864

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.93  E-value=1.9e-09  Score=66.82  Aligned_cols=65  Identities=15%  Similarity=0.055  Sum_probs=48.4

Q ss_pred             hhhccceeeEEeecC-----CCccEEEEecCCCCccccc-ccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADD-----EDIPVYIWYDSYPTHEAEE-YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g-----~p~p~~~w~k~~~~~~~~~-~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.++.+.|-+.|     .|.|.+.|||++.....+. ...|+..       .++.|.|.+++.+|+|.|.|.+.+
T Consensus        11 v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-------~~~~L~I~~~~~~DsG~Y~C~~~N   81 (94)
T cd05756          11 VLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-------QKDLLWFLPAALEDSGLYTCVVRN   81 (94)
T ss_pred             EecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee-------cCCeEEEccCCcccCeEEEEEEcC
Confidence            346778899998888     6899999999985421111 1234332       257899999999999999999975

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.92  E-value=4.5e-09  Score=65.27  Aligned_cols=67  Identities=18%  Similarity=0.033  Sum_probs=49.4

Q ss_pred             hhccceeeEEeec-CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec
Q psy534            9 SIFQMLSVGDFAD-DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN   81 (145)
Q Consensus         9 ~~~~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   81 (145)
                      ..+.++.+-|--. |.|.|.+.|++++....-. -..|..+.     ..++.|.|++|+++|+|.|.|.|.+..
T Consensus        16 ~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~-~d~r~~~~-----~~~G~L~fs~v~~~D~g~Y~C~A~n~~   83 (96)
T cd05727          16 KEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIP-EDGRRFVS-----QTNGNLYIAKVEASDRGNYSCFVSSPS   83 (96)
T ss_pred             eeCCcEEEeeCCCCCCCCCEEEEEECCcccccc-cCCCeEEe-----CCCCcEEEeecCHhhCceeEEEEEecc
Confidence            3467777888665 8899999999997532111 13344332     348999999999999999999998754

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.92  E-value=8.5e-09  Score=65.62  Aligned_cols=70  Identities=9%  Similarity=0.008  Sum_probs=49.3

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEec-CCCCCCeeeEEEcccC-CCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVD-KESPFGMASLNLTKIR-ESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~-~~~~~~~~sL~I~~v~-~~D~G~Y~C~~~~~   80 (145)
                      .++..+.+.|-+.|.|.|.++|++++.. +.. ...|..... .......++|.|.+++ .+|.|.|.|.|.|.
T Consensus        21 ~~g~~v~L~C~a~G~P~p~i~W~k~g~~-l~~-~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~   92 (109)
T cd05773          21 DGSSDANLVCQAQGVPRVQFRWAKNGVP-LDL-GNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNS   92 (109)
T ss_pred             CCCCEEEEEEECcccCCCEEEEEECCEE-CCC-CCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeC
Confidence            4567889999999999999999998754 221 122332211 1112235789999997 69999999999864

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.92  E-value=5.3e-09  Score=63.44  Aligned_cols=65  Identities=14%  Similarity=0.205  Sum_probs=43.9

Q ss_pred             ceeeEEeecCCCcc--EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           13 MLSVGDFADDEDIP--VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        13 ~~~~~~w~~g~p~p--~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      .+.+.|-+.|.|.|  .+.|++++..........+.....  .....++|.|.+++.+|+|.|.|.+.+
T Consensus         2 ~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~n   68 (85)
T cd04970           2 SITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVG--GKDSNGDLMIRNAQLKHAGKYTCTAQT   68 (85)
T ss_pred             cEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEe--cccccceEEEccCCHHhCeeeEEEEec
Confidence            46788999999877  679999875421111111111110  012478899999999999999999975

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.91  E-value=5.3e-09  Score=66.88  Aligned_cols=41  Identities=32%  Similarity=0.510  Sum_probs=34.8

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+|++|+++...+...++.+|.|++++.+|+|.|+|.+.
T Consensus        54 ~~~~f~~R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~   94 (112)
T cd05900          54 VNTEYLDRVSLPNYPAIPSDATLEITELRSNDSGTYRCEVM   94 (112)
T ss_pred             ECccccCeEEecccCCCCCCcEEEEeecccccCEEEEEEEe
Confidence            45678899998654445679999999999999999999997

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.91  E-value=5.2e-09  Score=64.31  Aligned_cols=63  Identities=21%  Similarity=0.225  Sum_probs=45.8

Q ss_pred             hccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCC-CCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRE-SDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~-~D~G~Y~C~~~~~   80 (145)
                      ....+.+.|-+.|.|.|.+.|++++.. +...-..+...       .+++|.|.++.. +|+|.|+|.+.+.
T Consensus        18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~-l~~~~~~~~~~-------~~~~L~i~~~~~~~d~G~Y~C~a~N~   81 (91)
T cd04967          18 DEGKVSLNCRARGSPPPTYRWLMNGTE-IDDEPDSRYSL-------VGGNLVISNPSKAKDAGRYQCLASNI   81 (91)
T ss_pred             CCCEEEEEEeeeEcCCCEEEEEECCEE-CCCCCCCCEEE-------ECCEEEEecCCccCCCEEEEEEEEcC
Confidence            335688889999999999999998753 21111223332       257899998874 9999999999753

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.90  E-value=4.6e-09  Score=64.79  Aligned_cols=70  Identities=17%  Similarity=0.111  Sum_probs=50.6

Q ss_pred             HHHhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            5 FAVKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         5 ~~~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      +.+...+..+.+.|-+.|.|.|.+.||+++... .  ...++.....  .....+|.|.+++.+|+|.|.|.+.+
T Consensus        10 ~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~-~--~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N   79 (92)
T cd05891          10 VVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDI-E--LSEHYSVKLE--QGKYASLTIKGVTSEDSGKYSINVKN   79 (92)
T ss_pred             cEEEcCCCEEEEEEEEEEeCCCeEEEEECCEEC-C--CCCCEEEEEc--CCCEEEEEECCCChhhCEEEEEEEEe
Confidence            345567888899999889999999999987532 2  2233332111  01235799999999999999999975

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.90  E-value=7.8e-09  Score=64.23  Aligned_cols=71  Identities=15%  Similarity=0.233  Sum_probs=51.0

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCCccc--cc---ccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEA--EE---YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~--~~---~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      +...+..+.+-|-+.|.|.|.+.|++.+...+.  ..   ...|+.+...  .....+|.|.+|+.+|+|.|.|.+..
T Consensus         8 tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           8 TVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKS--TPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             EEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeC--CCceEEEEECCCCcccCEEEEEEEEe
Confidence            345677788899999999999999998753211  00   1245544321  12468999999999999999999974

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.90  E-value=6.6e-09  Score=62.48  Aligned_cols=70  Identities=20%  Similarity=0.167  Sum_probs=50.1

Q ss_pred             HHhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            6 AVKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         6 ~~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .....+..+.+.|++.+.|.+.+.|++++......   .+.....  .......|.|.+++.+|+|.|.|.+.+.
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~---~~~~~~~--~~~~~~~l~i~~~~~~d~g~Y~C~~~n~   73 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKE---HRIGGYK--VRKKKWTLILESVVPSDSGKYTCIVENK   73 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECccc---CceeEEE--ccCcEEEEEEeECCcccCEEEEEEEEEC
Confidence            44567888999999999999999999987432211   1111110  1123568999999999999999999753

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.89  E-value=8e-09  Score=60.38  Aligned_cols=57  Identities=18%  Similarity=0.295  Sum_probs=42.2

Q ss_pred             cceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.+.|.+.|.|.|.+.|+|++.. +..  ..+..       .+...|.|.++  .|+|.|.|.|.+.
T Consensus         2 ~~v~L~C~a~G~P~P~v~W~k~g~~-l~~--~~~~~-------~~~~~L~i~~~--~d~G~Y~C~A~N~   58 (69)
T cd05739           2 GSVNLTCVAVGAPMPYVKWMKGGEE-LTK--EDEMP-------VGRNVLELTNI--YESANYTCVAISS   58 (69)
T ss_pred             CeEEEEEEeeecCCCEEEEEECCEE-CCC--cccee-------cCccEEEEecc--ccCeeEEEEEEeC
Confidence            4578899999999999999999754 221  11222       23557999997  4899999999864

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.88  E-value=1.1e-08  Score=62.25  Aligned_cols=67  Identities=16%  Similarity=0.215  Sum_probs=51.1

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|-+.|.|.|.+.|++++.. +..  ..|..+...   ....+|.|.+++.+|+|.|.|.+.+.
T Consensus        12 v~~G~~~~l~c~~~~~p~~~v~W~~~~~~-l~~--~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~~~n~   78 (90)
T PF07679_consen   12 VKEGESVTLECEVSGNPPPTVTWYKNGRP-LTS--SQRYQIESD---GGSSSLTIKNVTREDAGTYTCVASNS   78 (90)
T ss_dssp             EETTSEEEEEEEEEESSSSEEEEEETTEE-EES--SSSEEEEEE---TTEEEEEESSESGGGSEEEEEEEEET
T ss_pred             EeCCCEEEEEEEEEeCCCCcccccccccc-eee--eeeeeeecc---cceeEEccCCCChhhCEEEEEEEEEC
Confidence            34577888999999999999999999743 332  233333221   25899999999999999999999753

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.87  E-value=7.6e-09  Score=64.48  Aligned_cols=63  Identities=13%  Similarity=0.151  Sum_probs=45.7

Q ss_pred             cceeeEEeecCCCccEEEEec---CCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           12 QMLSVGDFADDEDIPVYIWYD---SYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        12 ~~~~~~~w~~g~p~p~~~w~k---~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      .....+.|.++.+...+.+.+   ......++.|++|+.+.     ..+++|.|++++.+|+|.|.|++..
T Consensus        17 ~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~-----~~~~sL~I~~~~~~DsG~Y~c~v~~   82 (97)
T cd05775          17 TEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFS-----QNDYSLQISNLKMEDAGSYRAEINT   82 (97)
T ss_pred             cEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEec-----CCceeEEECCCchHHCEEEEEEEEc
Confidence            456678888876555555543   22223456788899873     3379999999999999999999974

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.86  E-value=2.4e-08  Score=62.54  Aligned_cols=64  Identities=19%  Similarity=0.340  Sum_probs=44.4

Q ss_pred             eeeEEeec---C-CCccEEEE-ecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           14 LSVGDFAD---D-EDIPVYIW-YDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        14 ~~~~~w~~---g-~p~p~~~w-~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.|.+   | .+..+... ++.+. ...++|++|+++..+ ....+.+|.|++++.+|+|.|.|.+..
T Consensus        17 ~~~v~W~k~~~~~~~~~i~~~~~~~~~-~~~~~~~~Rv~f~~~-~~~~~~sL~I~nv~~sD~GtY~C~v~~   85 (100)
T cd05888          17 VVQVLWIRENAGGVEEEIALLHFKYGQ-TEFHAYEGRVRFETP-NPIADGALILRNAVQADEGKYKCRVIT   85 (100)
T ss_pred             EEEEEEEEccCCCCcEEEEEEeccCCc-ccCCCccCcEEEeCC-CCCCceEEEEecCccccceEEEEEEEe
Confidence            55788888   2 23344433 33333 234578899998543 234688999999999999999999974

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.85  E-value=1.9e-08  Score=60.22  Aligned_cols=61  Identities=15%  Similarity=0.184  Sum_probs=46.6

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+..+.+.|.+.|. .+.+.|+|++.. +..  ..|+.+.       ..+|.|.+++.+|+|.|.|.+.+
T Consensus         6 ~~~G~~v~l~C~~~~~-~~~v~W~k~g~~-l~~--~~~~~~~-------~~~L~I~~~~~~DsG~Y~C~a~n   66 (79)
T cd04973           6 AHPGDLLQLRCRLRDD-VQSINWTKDGVQ-LGE--NNRTRIT-------GEEVQIKDAVPRDSGLYACVTSS   66 (79)
T ss_pred             ecCCCCEEEEEEecCC-CceEEEeeCCcC-CCC--CceEEEe-------CCEEEECCCChhhCEEEEEEEeC
Confidence            4567788999999886 568999999854 322  2344431       45899999999999999999974

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.84  E-value=2.6e-08  Score=61.41  Aligned_cols=68  Identities=16%  Similarity=0.097  Sum_probs=47.5

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+..+.+.|-+.|.|. .+.|++.+...+..  .+|.....+  .....+|.|.+++.+|+|.|.|.+.+.
T Consensus        12 v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~--~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~A~N~   79 (92)
T cd04977          12 ISVGESKFFLCQVIGEPK-DISWFSPNGEKLVT--QQQISVVQN--DDVRSTLTIYNANIEDAGIYKCVATDA   79 (92)
T ss_pred             ECCCCeEEEEEEeEeeCC-eEEEECCCCCEecc--CCCEEEEeC--CCCEEEEEEecCCcccCEEEEEEEEcC
Confidence            456778899999999874 89999854332222  123332211  123578999999999999999999864

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.84  E-value=2.7e-08  Score=64.00  Aligned_cols=40  Identities=23%  Similarity=0.363  Sum_probs=34.5

Q ss_pred             cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+|++|+.+..+ ...++.+|.|++++.+|+|.|.|.+.+
T Consensus        62 ~~~f~~Rv~f~g~-~~~~daSI~I~nv~~sD~G~Y~C~v~n  101 (116)
T cd05879          62 VGPFKERIEWVGN-PSRKDGSIVIHNLDYTDNGTFTCDVKN  101 (116)
T ss_pred             ccCccCceEEeCC-CCcCeeEEEEccCCcccCEEEEEEEEc
Confidence            3678999998765 356799999999999999999999975

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.84  E-value=1.9e-08  Score=62.50  Aligned_cols=71  Identities=17%  Similarity=0.200  Sum_probs=49.9

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCCccc-----ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEA-----EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~-----~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      +...+..+.+.|-+.+.|.|.+.|++.+...+.     ....+|+.....  .....+|.|.+++.+|+|.|.|.+..
T Consensus         8 ~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~--~~~~~sL~I~~v~~~DsG~Y~C~~~t   83 (95)
T cd07701           8 TVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA--SWHELSISISDVSLSDEGQYTCSLFT   83 (95)
T ss_pred             EEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEEC--CCCcEEEEECcCCcccCEEEEEEeEe
Confidence            345678888999999999999999864321110     012345544221  13468999999999999999999974

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.83  E-value=1.3e-08  Score=61.88  Aligned_cols=65  Identities=15%  Similarity=0.092  Sum_probs=44.3

Q ss_pred             ceeeEEeecC--CCccEEEEecCCCCccccc-ccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           13 MLSVGDFADD--EDIPVYIWYDSYPTHEAEE-YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        13 ~~~~~~w~~g--~p~p~~~w~k~~~~~~~~~-~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ++.+.|-+.+  .+.+.+.|++++.. +... -..|+....  .....++|.|.+++.+|+|.|+|.|.+.
T Consensus         2 ~~~l~C~v~~d~~l~~~~~W~~dg~~-i~~~~~~~~~~~~~--~~~~~~~L~I~nv~~~dsG~YtC~a~n~   69 (85)
T cd05853           2 SIVLPCQVSHDHSLDIVFTWSFNGHL-IDFQKDGDHFERVG--GQDSAGDLMIRSIQLKHAGKYVCMVQTS   69 (85)
T ss_pred             cEEEEEEeccCCCCCcEEEEEECCEE-CcccCCCccEEEec--cCCCCCcEEEecCCHHHCEEEEEEEEcc
Confidence            3566787764  56888999999864 3221 112433321  1123678999999999999999999754

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.82  E-value=3.5e-08  Score=61.36  Aligned_cols=64  Identities=22%  Similarity=0.409  Sum_probs=47.5

Q ss_pred             ceeeEEeecC---CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           13 MLSVGDFADD---EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        13 ~~~~~~w~~g---~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      .+.++.|.+-   ....+..+....+..+...|++|+.+...  ...+.+|.|.||+.+|+|.|+|.+.
T Consensus        14 ~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~--~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889          14 VLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNS--TREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             cEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecC--CCCccEEEEcCCCcccCEEEEEEEE
Confidence            4677788872   23445555554445567789999998653  2368999999999999999999995

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.82  E-value=2.2e-08  Score=61.36  Aligned_cols=35  Identities=23%  Similarity=0.393  Sum_probs=29.9

Q ss_pred             cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      .+.+++|+.+.      .+++|.|.+++.+|+|.|+|++..
T Consensus        44 ~~~~~~R~~~~------~~~sL~I~~l~~~DsG~Y~c~v~~   78 (92)
T cd05741          44 GPAYSGRETIY------PNGSLLIQNLTKEDSGTYTLQIIS   78 (92)
T ss_pred             CCCcCCeEEEc------CCceEEEccCCchhcEEEEEEEEc
Confidence            45688999873      369999999999999999999964

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.81  E-value=1.6e-08  Score=62.69  Aligned_cols=66  Identities=17%  Similarity=0.114  Sum_probs=51.8

Q ss_pred             hhhccceeeEEe-ecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCE-EEEEEEEEec
Q psy534            8 KSIFQMLSVGDF-ADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQG-WYECKVVFLN   81 (145)
Q Consensus         8 ~~~~~~~~~~~w-~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G-~Y~C~~~~~~   81 (145)
                      ...+.++.+-|- .+|.|.|.+.|+++....+.  ..+|+..      ..++.|.|++|+.+|+| .|.|.|.+..
T Consensus        15 V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~--~~~Ri~~------~~~GnL~fs~v~~~D~g~~Y~C~a~~~~   82 (95)
T cd05845          15 VEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT--QDERVSM------GQNGNLYFANVEEQDSHPDYICHAHFPG   82 (95)
T ss_pred             EecCCCEEEEecCCCCCCCCEEEEECCCCcccc--ccccEEE------CCCceEEEEEEehhhCCCCeEEEEEccc
Confidence            346788888997 57999999999977643332  2567765      34799999999999999 8999998653

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.80  E-value=3.2e-08  Score=61.51  Aligned_cols=65  Identities=22%  Similarity=0.341  Sum_probs=46.1

Q ss_pred             ceeeEEeec--C-CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           13 MLSVGDFAD--D-EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        13 ~~~~~~w~~--g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      .+.++.|.+  + ....+..+.+..+..+.+.|++|+.+..  ....+.+|.|++++.+|+|.|+|++..
T Consensus        14 ~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~--~~~~d~sl~i~nv~~~D~G~Y~C~v~t   81 (96)
T cd05887          14 TITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKN--YSLLDATIMLENVGFSDIGVYICKAVT   81 (96)
T ss_pred             cEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcC--CCCCccEEEEeCCCccccEEEEEEEEe
Confidence            556788876  2 1233334433334455678999999853  345699999999999999999999853

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.80  E-value=2e-08  Score=57.38  Aligned_cols=62  Identities=13%  Similarity=0.223  Sum_probs=41.2

Q ss_pred             cceeeEEee-cCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           12 QMLSVGDFA-DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        12 ~~~~~~~w~-~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..+.+.|.. .+.+.+.+.|++++..........+... .   ......|.|.+++.+|+|.|.|.|
T Consensus         2 ~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~---~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    2 SSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTN-S---VSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             SEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEET-T---TEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecc-c---ceeeeEEEEccCCHHHCEEEEEEC
Confidence            356788999 6888999999999865322221111110 0   000113999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.79  E-value=2e-08  Score=61.34  Aligned_cols=61  Identities=15%  Similarity=0.163  Sum_probs=45.4

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.++.+.|-..+ +.+.+.|++++.. +... ..|+.+.       ++.|.|.+++.+|+|.|+|.+..
T Consensus         9 ~~G~~v~L~C~~~~-~~~~i~W~~ng~~-i~~~-~~r~~~~-------~~~L~I~nv~~~DsG~Y~C~a~e   69 (87)
T cd05873           9 KLGNNAELKCSPKS-NLARVVWKFDGKV-LTPE-SAKYLLY-------RDGLLIFNASEADAGRYQCLSVE   69 (87)
T ss_pred             ECCCCEEEEEECCC-CCCeEEEEECCEE-CCCC-CceEEEE-------CCcEEEeCCCHHHCEEEEEEEEe
Confidence            45677888898764 6788999999854 2222 1344432       56799999999999999999964

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.78  E-value=5.9e-08  Score=60.43  Aligned_cols=72  Identities=19%  Similarity=0.152  Sum_probs=50.5

Q ss_pred             hhhccceeeEEeecCCCcc-EEEEecCCCCcccccccceEEEecCCC-CCCeeeEEEcccCCCC-CEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIP-VYIWYDSYPTHEAEEYKGRISRVDKES-PFGMASLNLTKIRESD-QGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p-~~~w~k~~~~~~~~~~~~R~~~~~~~~-~~~~~sL~I~~v~~~D-~G~Y~C~~~~~   80 (145)
                      +..+..+.+.|-+.|.|.| .+.|++++.. +...-.+|..+..... .....+|.|.+++.+| .|.|.|.|.|.
T Consensus        13 ~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~-i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~   87 (98)
T cd05758          13 AILGDKGRVECFIFSTPPPDRIVWTWKENE-LESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNS   87 (98)
T ss_pred             EeCCCcEEEEEEEcccCCCCEeEEEECCEE-ccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcC
Confidence            4567889999999999999 6999998753 2222224555433211 1123689999999955 99999999864

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.75  E-value=3.5e-08  Score=61.05  Aligned_cols=68  Identities=18%  Similarity=0.202  Sum_probs=44.3

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCCccccc--ccceEEEecCCCCCCeeeE---EE--cccCCCCCEEEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEE--YKGRISRVDKESPFGMASL---NL--TKIRESDQGWYECKVVF   79 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~--~~~R~~~~~~~~~~~~~sL---~I--~~v~~~D~G~Y~C~~~~   79 (145)
                      ....+.++.+.|.+.|.|.|.+.|+|++.......  ...+.....      ++++   .|  ..++.+|+|.|+|.+.+
T Consensus        12 ~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~D~G~Y~C~a~N   85 (100)
T cd07693          12 IVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLP------SGSLFFLRVVHGRKGRSDEGVYVCVAHN   85 (100)
T ss_pred             EEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEec------CCcEEEEEeeccCCCcCcCEEEEEEEEc
Confidence            34567889999999999999999999875422111  111222211      2222   22  23479999999999986


Q ss_pred             e
Q psy534           80 L   80 (145)
Q Consensus        80 ~   80 (145)
                      .
T Consensus        86 ~   86 (100)
T cd07693          86 S   86 (100)
T ss_pred             c
Confidence            4

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.75  E-value=8.8e-08  Score=59.38  Aligned_cols=65  Identities=17%  Similarity=0.366  Sum_probs=41.8

Q ss_pred             ceeeEEeecCC---CccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           13 MLSVGDFADDE---DIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        13 ~~~~~~w~~g~---p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      +...+.|.+..   +..+..+.........+.+++|+.+...  ...+.+|.|.+++.+|+|.|.|.+..
T Consensus        16 ~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~sL~I~~v~~~D~G~Y~C~v~~   83 (98)
T cd05718          16 QITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNS--SLEDATISISNLRLEDEGNYICEFAT   83 (98)
T ss_pred             eEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCC--CCCceEEEEccCCcccCEEEEEEEEe
Confidence            34456777722   2222233222222334567889887543  12688999999999999999999863

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.73  E-value=4.9e-08  Score=62.71  Aligned_cols=42  Identities=24%  Similarity=0.332  Sum_probs=33.7

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ....|++|+.+.. +...++.+|.|++++.+|+|.|+|.+.+.
T Consensus        60 ~~~~f~~R~~~~~-~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~  101 (115)
T cd05880          60 PDGRFKGRVVWDG-NIMRRDASILIWQLQPTDNGTYTCQVKNP  101 (115)
T ss_pred             CcccccCeEEEec-CCcCCceEEEEeeCChhhCEEEEEEEEeC
Confidence            3456888987654 34566899999999999999999999753

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.72  E-value=5.8e-08  Score=58.68  Aligned_cols=67  Identities=15%  Similarity=0.089  Sum_probs=43.9

Q ss_pred             cceeeEEeecCC--CccEEEEecCCCCcccccccc-eEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           12 QMLSVGDFADDE--DIPVYIWYDSYPTHEAEEYKG-RISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        12 ~~~~~~~w~~g~--p~p~~~w~k~~~~~~~~~~~~-R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.+.|-+.|.  |.|.+.|++.+.......... +... .. .....++|.|.+++.+|+|.|.|.+.+.
T Consensus         2 e~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~-~~-~~~~~s~L~I~~v~~~DsG~Y~C~a~n~   71 (84)
T cd05742           2 ETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSL-SE-ATELSSTLTIPNATLKDSGTYTCAASSG   71 (84)
T ss_pred             CeEEEEEEEEeCCCccEEEEEecCCcccCCceEeeccccc-cc-ceEEEEEEEECCCChhhCEEEEEEEccC
Confidence            467888999988  889999987654311110000 1110 00 1123678999999999999999999753

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.72  E-value=7e-08  Score=53.96  Aligned_cols=59  Identities=15%  Similarity=0.195  Sum_probs=44.2

Q ss_pred             ccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           11 FQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        11 ~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      +..+.+.|...+.|.+.+.|++++... .    .+....     .....|.|.+++.+|+|.|+|.+.+
T Consensus         2 g~~~~l~C~~~~~~~~~v~W~~~~~~~-~----~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~~~n   60 (63)
T smart00408        2 GQSVTLTCPAEGDPVPNITWLKDGKPL-P----ESNRLS-----ASGSTLTIKSVSLEDSGEYTCVAEN   60 (63)
T ss_pred             CceEEEEeeCccCCCCeEEEEECCEEC-C----CCCEEe-----cCCcEEEEeeCCcccCEEEEEEEec
Confidence            456778898888888999999987432 2    122221     2367899999999999999999864

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.71  E-value=8.7e-08  Score=59.60  Aligned_cols=64  Identities=14%  Similarity=0.211  Sum_probs=44.5

Q ss_pred             eeeEEeec---CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           14 LSVGDFAD---DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        14 ~~~~~w~~---g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      +..+.|.+   +.|..++..+.........+|++|+.+..  ....+.+|.|++++.+|+|.|+|.+..
T Consensus        16 ~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~sL~I~nv~~~D~G~Y~C~~~~   82 (97)
T cd05846          16 VLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITS--LGLNSTSITIWNVTLEDEGCYKCIFNT   82 (97)
T ss_pred             eEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcC--CCCCccEEEEeCCceeeeEEEEEEEEe
Confidence            45677876   22334444444333445567888887753  345689999999999999999999863

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.70  E-value=1.5e-07  Score=57.02  Aligned_cols=65  Identities=12%  Similarity=0.188  Sum_probs=44.4

Q ss_pred             cceeeEEeecCCCccEEEEecCCCCccccccc--ceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYK--GRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~--~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .++.+.|-+.|.|.+.+.|++.+... .....  .+..+..   .....+|.|.+++.+|+|.|.|.+.+.
T Consensus         2 e~~~l~C~~~~~~~~~~~W~~~~~~~-~~~~~~~~~~~~~~---~~~~s~L~I~~~~~~DsG~Y~C~a~n~   68 (84)
T cd05861           2 ETITVNCIVQGNEVVDFSWTYPGKDI-GKGIPEVEEVKVPA---TTLRSTLTFPHATVEDSGTYECAAHES   68 (84)
T ss_pred             CcEEEEEEEECCCccEEEEEECCccC-CCCceEEEEEecCC---cEEEEEEEECCCCcCCCEEEEEEEEEC
Confidence            46788999999999999998765321 11111  1222110   112678999999999999999999753

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.69  E-value=1.2e-07  Score=59.95  Aligned_cols=36  Identities=22%  Similarity=0.417  Sum_probs=30.8

Q ss_pred             cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+.+++|..+.      .+++|.|.+++++|+|.|.|++.+.
T Consensus        57 gp~~~gR~~~~------~ngSL~I~~v~~~D~G~Y~~~v~~~   92 (105)
T cd05774          57 GPAYSGRETIY------PNGSLLIQNVTQKDTGFYTLQTITT   92 (105)
T ss_pred             CcccCCcEEEe------CCCcEEEecCCcccCEEEEEEEEeC
Confidence            35688999884      4889999999999999999999753

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.69  E-value=2e-08  Score=61.97  Aligned_cols=62  Identities=21%  Similarity=0.289  Sum_probs=44.6

Q ss_pred             hhhccceeeEEeecC-----CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADD-----EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g-----~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..++.+..+.|+..+     +|.|.+.|||++.+. ...  .+ ...      .++.|.|.+++.+|+|.|.|.+.+
T Consensus         7 ~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i-~~~--~~-~~~------~~~~L~I~~v~~~DsG~YtC~~~n   73 (92)
T cd05757           7 LFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLL-EGD--RK-RFV------KGSKLLIQNVTEEDAGNYTCKLTF   73 (92)
T ss_pred             EeeccCCEEECCChHHccCCCCCCcEEEeECCEEC-CCC--cc-EEe------cCCEEEEeeCChhhCEEEEEEEEe
Confidence            345667778887652     367899999998542 211  11 111      378999999999999999999975

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.66  E-value=1.2e-07  Score=57.96  Aligned_cols=63  Identities=14%  Similarity=0.177  Sum_probs=45.3

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCccccc-ccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEE-YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~-~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.++.+-|-..+ |.+.+.|++++....... ...|+..       ....|.|.+++.+|+|.|+|.+.+
T Consensus         9 ~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~~   72 (89)
T cd04979           9 VEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV-------TEDGLLIRSVSPADAGVYTCQSVE   72 (89)
T ss_pred             ECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE-------cCCCEEEccCCHHHCEEEEEEEec
Confidence            45678888898877 788999999975421111 1234433       145699999999999999999964

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.64  E-value=1.8e-07  Score=60.04  Aligned_cols=41  Identities=24%  Similarity=0.382  Sum_probs=32.9

Q ss_pred             cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...|++|+.+..+ ...++.+|.|++++.+|+|.|.|.+.+.
T Consensus        62 ~~~~~~R~~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C~v~~~  102 (116)
T cd05715          62 DGRFKDRVEWVGN-PSRKDASIVIHNLQFTDNGTYTCDVKNP  102 (116)
T ss_pred             CccccCcEEEecC-CcCCeeEEEEeeCCcccCEEEEEEEEeC
Confidence            4567888887532 3455799999999999999999999854

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.63  E-value=2.5e-07  Score=57.16  Aligned_cols=71  Identities=15%  Similarity=0.174  Sum_probs=49.3

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCCccc-----ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEA-----EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~-----~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      +...+..+.+-|.+.+.+.+.+.|++.....+.     ....+|+.....  .....+|.|.+++.+|+|.|+|.+..
T Consensus         8 ~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~   83 (95)
T cd05717           8 TVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNF--SANELSISISNVSLSDEGRYTCSLYT   83 (95)
T ss_pred             EEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcC--CCCeeEEEEccCCcccCEEEEEEEec
Confidence            356788899999998888899999864321110     011245554321  13467899999999999999999863

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.63  E-value=2e-07  Score=60.19  Aligned_cols=39  Identities=23%  Similarity=0.282  Sum_probs=31.7

Q ss_pred             ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           40 EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        40 ~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      +++++|+.+..+ ...++++|.|++++.+|+|.|.|++..
T Consensus        63 ~~f~gR~~~~~~-~~~~~~sL~I~~l~~~Dsg~Y~C~~~~  101 (119)
T cd05712          63 ESTRGRFRLLGD-LGKKNCSLLISDAQPEDSGKYFFRVEL  101 (119)
T ss_pred             ccccccEEEecC-CCCCEEEEEEccCChhhCeEEEEEEEc
Confidence            467889887533 456689999999999999999998853

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.63  E-value=1.6e-07  Score=59.40  Aligned_cols=73  Identities=21%  Similarity=0.265  Sum_probs=53.1

Q ss_pred             HHhhhccceeeEEeecCCCccEEEEecCCCC---c--------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEE
Q psy534            6 AVKSIFQMLSVGDFADDEDIPVYIWYDSYPT---H--------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE   74 (145)
Q Consensus         6 ~~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~---~--------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   74 (145)
                      ..+..+.++.+-|-+.+.+.+.+.||+....   .        ....+.+|+.+... ......+|.|++++.+|+|.|+
T Consensus         8 v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~~~~~DsG~Y~   86 (109)
T cd04983           8 LSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLD-KSRKSSSLHISAAQLSDSAVYF   86 (109)
T ss_pred             eEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEc-ccCCEEEEEECCCCHHHCEEEE
Confidence            3566788888999888777788899876421   0        01135677776432 2346889999999999999999


Q ss_pred             EEEEE
Q psy534           75 CKVVF   79 (145)
Q Consensus        75 C~~~~   79 (145)
                      |.+.+
T Consensus        87 C~~~~   91 (109)
T cd04983          87 CALSE   91 (109)
T ss_pred             EEEec
Confidence            99874

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.61  E-value=1.3e-07  Score=67.67  Aligned_cols=63  Identities=17%  Similarity=0.278  Sum_probs=46.7

Q ss_pred             hhccceeeEEeec-----CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFAD-----DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~-----g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+..+.+.|-+.     |.|.|.+.|||++....   ...|+.+..     .+.+|.|.+++++|+|.|+|.+..
T Consensus       142 ~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~---~~~r~~~~~-----~~~~L~I~~V~~~DsG~YtC~a~~  209 (227)
T PHA02826        142 NSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVL---YTDRIQLRN-----NNSTLVIKSATHDDSGIYTCNLRF  209 (227)
T ss_pred             ecCCCEEEEeeCCCCccccCCCceEEEEECCEECC---CCCCEEEeC-----CCCEEEECcCCHHhCEEEEEEEEE
Confidence            3466778889876     34679999999986432   223555432     356899999999999999999974

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.61  E-value=1.2e-07  Score=56.01  Aligned_cols=26  Identities=35%  Similarity=0.621  Sum_probs=24.3

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ...|.|.+++.+|+|.|+|.|.|.+|
T Consensus        39 ~~~L~I~~v~~~D~G~Y~C~A~N~~G   64 (74)
T cd05745          39 SGTLRISRVALHDQGQYECQAVNIVG   64 (74)
T ss_pred             CCeEEEeeCCHHhCEEEEEEEEeCCC
Confidence            34899999999999999999999999

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.60  E-value=2.1e-07  Score=56.06  Aligned_cols=59  Identities=10%  Similarity=0.150  Sum_probs=44.4

Q ss_pred             hhhccceeeEEeecCCCcc-EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIP-VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p-~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+-|-+.|.|.| .+.|+|++.. +..    +.       ....+.|.|.++  .|+|.|.|.|.|.
T Consensus        10 v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~-l~~----~~-------~~~~s~L~i~~~--~d~g~Y~C~A~N~   69 (81)
T cd05749          10 VTANTPFNLTCQAVGPPEPVEILWWQGGSP-LGD----PP-------APSPSVLNVPGL--NETSKFSCEAHNA   69 (81)
T ss_pred             EcCCCCEEEEEEeeeecCCeEEEEEECCEE-CCC----CC-------CCCCCEEEEccc--cCCeEEEEEEEec
Confidence            3457788899999999999 6999999854 221    11       122568999987  5889999999864

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=98.59  E-value=1.6e-07  Score=55.45  Aligned_cols=25  Identities=40%  Similarity=0.527  Sum_probs=24.0

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+|.|.+++.+|+|.|+|.|+|.+|
T Consensus        39 g~L~I~~v~~~D~G~Y~C~A~N~~G   63 (73)
T cd05852          39 GSLEILNITKLDEGSYTCFAENNRG   63 (73)
T ss_pred             CEEEECcCChhHCEEEEEEEECCCC
Confidence            4899999999999999999999999

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.59  E-value=2.4e-07  Score=58.40  Aligned_cols=38  Identities=32%  Similarity=0.432  Sum_probs=30.2

Q ss_pred             ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           40 EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        40 ~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+++|+.+..  ...++.+|.|++++.+|+|.|+|.+.+
T Consensus        52 ~~~~~r~~~~~--~~~~~~sL~I~~v~~sD~G~Y~C~v~~   89 (106)
T cd05714          52 GSGRVRVPLYP--ADPGDASLVITDLRLEDSGRYRCEVID   89 (106)
T ss_pred             CCCceEEEeeC--CCCCcceEEECCCCHHHCEEEEEEEEc
Confidence            45667776532  345799999999999999999999974

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.56  E-value=2.8e-07  Score=57.69  Aligned_cols=70  Identities=21%  Similarity=0.309  Sum_probs=46.6

Q ss_pred             hhccceeeEEeecCC-CccEEEEecCCC---C-----------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEE
Q psy534            9 SIFQMLSVGDFADDE-DIPVYIWYDSYP---T-----------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWY   73 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~-p~p~~~w~k~~~---~-----------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   73 (145)
                      ..+..+.+-|.+.+. +...+.||+...   .           ...+.+.+|+.+..+ ......+|.|.+++.+|+|.|
T Consensus         4 ~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~sL~I~~v~~~D~G~Y   82 (105)
T cd00099           4 SEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRD-SSKSSFTLTISSLQPEDSAVY   82 (105)
T ss_pred             cCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEe-ccCCEEEEEECCCCHHHCEEE
Confidence            455566666666654 555666666432   0           012456778876543 123578999999999999999


Q ss_pred             EEEEEE
Q psy534           74 ECKVVF   79 (145)
Q Consensus        74 ~C~~~~   79 (145)
                      .|.+..
T Consensus        83 ~C~v~~   88 (105)
T cd00099          83 YCAVSL   88 (105)
T ss_pred             EEEEec
Confidence            999974

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.56  E-value=3.8e-07  Score=54.77  Aligned_cols=60  Identities=12%  Similarity=0.218  Sum_probs=43.1

Q ss_pred             eeeEEeec-CCCccEEEEecCCCCccccc---ccc-eEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec
Q psy534           14 LSVGDFAD-DEDIPVYIWYDSYPTHEAEE---YKG-RISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN   81 (145)
Q Consensus        14 ~~~~~w~~-g~p~p~~~w~k~~~~~~~~~---~~~-R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   81 (145)
                      +.+.|... |+|++.|.||+++.+.....   ..+ ++.        ..++|.|......|.+.|.|+|.+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t--------~~s~L~~~~~~~Ddg~~~~C~A~n~a   66 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVS--------VSNTIRFPVDRKDDGAILSCEASHPA   66 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEE--------EEEEEEEEeeeccCCcEEEEEEEChh
Confidence            35779888 78999999999986432111   111 111        15679999999999999999998654

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.54  E-value=3.8e-07  Score=56.13  Aligned_cols=63  Identities=16%  Similarity=0.166  Sum_probs=43.4

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCC--Cccc-ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYP--THEA-EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~--~~~~-~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      -.+..+.+-|-. +.|.|.+.||+...  .... ....+|...       ..++|.|.+++++|+|.|.|.+.+
T Consensus         9 ~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-------~~~~L~I~~~~~~DsG~Y~C~a~~   74 (91)
T cd05871           9 VENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH-------TERGLLLRSLQRSDAGVYTCTAVE   74 (91)
T ss_pred             ecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE-------ecCeEEEeeCChhHCEEEEEEEEc
Confidence            346677888875 57889999998532  1100 011234433       256799999999999999999973

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=98.52  E-value=3.6e-07  Score=55.83  Aligned_cols=26  Identities=38%  Similarity=0.643  Sum_probs=24.5

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +..|.|.+++.+|+|.|+|.|.|.+|
T Consensus        52 ~~~L~I~~v~~~D~G~Y~C~A~N~~G   77 (88)
T cd05851          52 GAVLKIFNIQPEDEGTYECEAENIKG   77 (88)
T ss_pred             CCEEEECcCChhhCEEEEEEEEcCCC
Confidence            45899999999999999999999999

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.51  E-value=3e-07  Score=54.04  Aligned_cols=25  Identities=36%  Similarity=0.626  Sum_probs=23.9

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|.+|
T Consensus        39 ~~L~i~~v~~~D~G~Y~C~a~N~~G   63 (73)
T cd04969          39 GSLEILNVTKSDEGKYTCFAENFFG   63 (73)
T ss_pred             CeEEEccCChhHCEEEEEEEECCCC
Confidence            4899999999999999999999999

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.51  E-value=4.2e-07  Score=54.96  Aligned_cols=61  Identities=16%  Similarity=0.037  Sum_probs=45.9

Q ss_pred             hhhccceeeEEeecC-CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+..+.+.|-+.+ .|.+.+.|++++...     ..+..       ..++.|.|.+++.+|+|.|.|.+.+.
T Consensus        13 v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~-----~~~~~-------~~~~~L~I~~v~~~DsG~Y~C~a~n~   74 (85)
T cd05754          13 VRPGADVSFICRAKSKSPAYTLVWTRVGGGL-----PSRAM-------DFNGILTIRNVQLSDAGTYVCTGSNM   74 (85)
T ss_pred             EcCCCCEEEEEEcCCCCCCcEEEEEECCCcC-----CCccc-------ccCCEEEECCCCHHHCEEEEEEEecc
Confidence            356778888998874 788999999987431     11111       22678999999999999999999753

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.50  E-value=4.2e-07  Score=55.62  Aligned_cols=36  Identities=28%  Similarity=0.351  Sum_probs=29.5

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC-----CcEEEEeCeeE
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY-----PDLLVVLGSFH  140 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g-----~~~~v~~~~~~  140 (145)
                      ..|.|.+++.+|+|.|+|.|.|.+|     ..|.|....++
T Consensus        47 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~   87 (90)
T cd05726          47 GDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTDVIAD   87 (90)
T ss_pred             CeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEeecccC
Confidence            3899999999999999999999999     55555554443

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.50  E-value=4.2e-07  Score=53.86  Aligned_cols=25  Identities=20%  Similarity=0.347  Sum_probs=23.9

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus        41 ~~L~I~~~~~~D~G~Y~C~a~N~~G   65 (76)
T cd05867          41 GALILTDVQPSDTAVYQCEARNRHG   65 (76)
T ss_pred             CEEEECCCChhhCEEEEEEEECCCC
Confidence            4899999999999999999999999

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.50  E-value=9e-07  Score=54.92  Aligned_cols=70  Identities=14%  Similarity=0.121  Sum_probs=48.3

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCCcc-----cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHE-----AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~-----~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ++.++..+.+-|-..+.....+.|++-+...+     .+....|+.....  .....+|.|++++.+|+|.|+|.+.
T Consensus         8 tv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~--~~~~~tL~I~~vq~~D~G~Y~Cqv~   82 (95)
T cd05881           8 TVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNF--SSNELRVSLSNVSLSDEGRYFCQLY   82 (95)
T ss_pred             EEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeC--CCCEEEEEECcCCcccCEEEEEEEE
Confidence            45678888888888876556677775553211     1113456665431  2347789999999999999999986

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.49  E-value=4.9e-07  Score=54.65  Aligned_cols=60  Identities=17%  Similarity=0.200  Sum_probs=46.2

Q ss_pred             HhhhccceeeEEeec-CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            7 VKSIFQMLSVGDFAD-DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +...+.++.+.|... +.+.+.+.|||++...   .+           ......|.|.+++.+|+|.|+|.+.+.
T Consensus        10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~---~~-----------~~~~~~l~I~~~~~~dsG~Y~C~~~~~   70 (83)
T cd05753          10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAK---KY-----------SHSNSNLSIPQATLSDSGSYHCSGIIG   70 (83)
T ss_pred             eecCCCCEEEEeeCCCCCcceEEEEEECCeEc---cc-----------cCCCceEEECccCHHHCEEEEEEEEeC
Confidence            345688999999986 5677889999987421   11           122678999999999999999999764

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.47  E-value=3.4e-07  Score=54.74  Aligned_cols=55  Identities=13%  Similarity=0.087  Sum_probs=43.2

Q ss_pred             hhhccceeeEEeecCCCc-cEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDI-PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~-p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.++.+.|-..+.|. +.+.|||++... .               ....+|.|.++ .+|+|.|+|++.+
T Consensus        12 v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l-~---------------~~~~~l~i~~~-~~dsG~Y~C~a~~   67 (78)
T cd05752          12 IFQGEKVTLTCNGFNSPEQNSTQWYHNGKLL-E---------------TTTNSYRIRAA-NNDSGEYRCQTQG   67 (78)
T ss_pred             eeCCCCEEEEEeCCCCCCCccEEEEECCEEe-e---------------ccCCeEEEeec-ccCCEEeEEECCC
Confidence            456778899999888775 469999998431 0               12678999999 9999999999964

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.46  E-value=7.5e-07  Score=54.95  Aligned_cols=27  Identities=33%  Similarity=0.628  Sum_probs=24.9

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+..|.|.+++.+|+|.|+|.|.|.+|
T Consensus        56 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G   82 (95)
T cd05730          56 DGSEMTILDVDKLDEAEYTCIAENKAG   82 (95)
T ss_pred             CCCEEEECCCChhhCEEEEEEEEcCCC
Confidence            445799999999999999999999999

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.45  E-value=6.4e-07  Score=52.78  Aligned_cols=26  Identities=35%  Similarity=0.540  Sum_probs=24.4

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +..|.|.+++.+|+|.|+|.|.|..|
T Consensus        40 ~~~L~i~~v~~~D~G~Y~C~A~N~~G   65 (76)
T cd04978          40 GGTLILSNVQPNDTAVYQCNASNVHG   65 (76)
T ss_pred             CCEEEECCCChhhCEEEEEEEEccCC
Confidence            45899999999999999999999999

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.42  E-value=9.3e-07  Score=53.77  Aligned_cols=26  Identities=38%  Similarity=0.643  Sum_probs=24.5

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +..|.|.+++.+|+|.|+|.|.|..|
T Consensus        52 ~~~L~i~~v~~~D~G~Y~C~a~N~~G   77 (88)
T cd04968          52 GAVLKIPNIQFEDEGTYECEAENIKG   77 (88)
T ss_pred             CCEEEECCCCcccCEEEEEEEEECCC
Confidence            34899999999999999999999999

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=98.41  E-value=9.6e-07  Score=55.06  Aligned_cols=26  Identities=23%  Similarity=0.263  Sum_probs=24.4

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ...|.|.++.++|+|.|+|.|+|.+|
T Consensus        55 ~s~L~I~~~~~~D~G~Ytc~a~N~~G   80 (98)
T cd05762          55 SSKLTITEGQQEHCGCYTLEVENKLG   80 (98)
T ss_pred             eeEEEECCCChhhCEEEEEEEEcCCC
Confidence            35799999999999999999999999

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.41  E-value=1.1e-06  Score=52.73  Aligned_cols=67  Identities=9%  Similarity=0.079  Sum_probs=42.8

Q ss_pred             ceeeEEeecC-CCccEEEEecCCCCcccccccceEEEecCCC-CCCeeeEEEcccCCCCCEEEEEEEEEec
Q psy534           13 MLSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGRISRVDKES-PFGMASLNLTKIRESDQGWYECKVVFLN   81 (145)
Q Consensus        13 ~~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   81 (145)
                      |+.+.|++.| .|.+.++|++++... ...... .....+.. ......|.|......|.|.|+|++.+..
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l-~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~   69 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVL-DGATYS-KELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEA   69 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEc-cCceee-eeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCcc
Confidence            5678999986 698999999987542 211111 11111100 0113568888888889999999997643

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.40  E-value=6.3e-07  Score=55.60  Aligned_cols=64  Identities=16%  Similarity=0.239  Sum_probs=42.4

Q ss_pred             hccceeeEEee----c-CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFA----D-DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~----~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+....++|--    . ..+.|.+.|||+..+ +.. ...+...+     .+...|.|.+|..+|+|.|+|++.+.
T Consensus         9 ~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~-l~~-~~~~~~~~-----~~~~~L~I~~v~~~D~G~YtC~~~~~   77 (95)
T cd05897           9 TSTSGKLVCPDLSDFTINRTDVELQWYKDSVL-LDK-DNEKFYSL-----KGSTYLHIIDVSLNDSGYYTCKLQFT   77 (95)
T ss_pred             cccCcEEECCCHHHcccCCCCCcEEEccCCEE-CcC-CCcceEec-----CCCCEEEEEEcChhhCEEEEEEEEEe
Confidence            44556667742    1 346789999999854 221 11222221     12567999999999999999999763

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.39  E-value=1.1e-06  Score=54.09  Aligned_cols=27  Identities=30%  Similarity=0.592  Sum_probs=25.0

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+..|.|.+++++|+|.|+|.|.|.+|
T Consensus        53 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G   79 (91)
T cd05740          53 DNRTLTFNNVTRSDTGHYQCEASNEVS   79 (91)
T ss_pred             CCCEEEECcCChhhCEEEEEEEEcCCC
Confidence            445899999999999999999999999

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.37  E-value=1.2e-06  Score=51.44  Aligned_cols=25  Identities=28%  Similarity=0.460  Sum_probs=23.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus        40 ~~L~i~~~~~~D~G~Y~C~a~N~~G   64 (74)
T cd05764          40 GTLDILITTVKDTGSFTCIASNAAG   64 (74)
T ss_pred             CEEEEEECChhhCEEEEEEEECCCC
Confidence            4899999999999999999999998

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=98.37  E-value=1.1e-06  Score=53.42  Aligned_cols=25  Identities=24%  Similarity=0.279  Sum_probs=24.0

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.++.++|+|.|+|.|.|.+|
T Consensus        52 ~~L~I~~~~~~D~G~Y~c~a~N~~G   76 (86)
T cd05894          52 SSFVIEGAEREDEGVYTITVTNPVG   76 (86)
T ss_pred             EEEEECCCccCcCEEEEEEEEeCCC
Confidence            4799999999999999999999999

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.36  E-value=2.1e-06  Score=54.01  Aligned_cols=38  Identities=34%  Similarity=0.443  Sum_probs=30.4

Q ss_pred             ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           40 EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        40 ~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..|.+|+.+...  ..++.+|.|.+++.+|+|.|+|.+.+
T Consensus        52 ~~~~~R~~~~~~--~~~~~sL~I~~v~~~DsG~Y~C~v~~   89 (106)
T cd05877          52 GSYQGRVFLRRA--HDLDASLVITDLRLEDYGRYRCEVID   89 (106)
T ss_pred             cCccCcEEecCC--CCCcEEEEEccCChHHCEEEEEEEEe
Confidence            457788887431  24578999999999999999999964

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.35  E-value=1.4e-06  Score=59.87  Aligned_cols=70  Identities=13%  Similarity=0.243  Sum_probs=51.0

Q ss_pred             hhhccceeeEEeec-CCCccEEEEecCCC---------CcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534            8 KSIFQMLSVGDFAD-DEDIPVYIWYDSYP---------THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus         8 ~~~~~~~~~~~w~~-g~p~p~~~w~k~~~---------~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      .+++.++.+.|-.. +...+.+.|+|...         ..+.++|++|+.+..  ....+.+|.|.+|+++|+|.|.|.+
T Consensus        27 V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS--~s~~~StItIknVt~sDeGcY~C~F  104 (189)
T PHA02987         27 VSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLS--KSFNESTILIKNVSLKDNGCYTCIF  104 (189)
T ss_pred             EcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEec--cCCCcceEEEEeCChhhCeEEEEEE
Confidence            45667777778775 55667788877632         234566778888533  1245789999999999999999999


Q ss_pred             EE
Q psy534           78 VF   79 (145)
Q Consensus        78 ~~   79 (145)
                      ..
T Consensus       105 ~t  106 (189)
T PHA02987        105 NT  106 (189)
T ss_pred             Ee
Confidence            64

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.35  E-value=1.1e-06  Score=51.31  Aligned_cols=27  Identities=26%  Similarity=0.500  Sum_probs=25.0

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+..|.|.+++.+|+|.|+|.|.|.+|
T Consensus        34 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G   60 (71)
T cd05876          34 NNKTLQLDNVLESDDGEYVCTAENSEG   60 (71)
T ss_pred             CCCEEEEcccCHHhCEEEEEEEEcCCC
Confidence            345899999999999999999999999

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>smart00406 IGv Immunoglobulin V-Type

Probab=98.35  E-value=2.1e-06  Score=50.87  Aligned_cols=36  Identities=33%  Similarity=0.610  Sum_probs=28.7

Q ss_pred             cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           41 EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        41 ~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      .+.+|+.+... ...+..+|.|.+++.+|+|.|.|.+
T Consensus        46 ~~~~R~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       46 SYKGRVTISKD-TSKNDVSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             ccCCcEEEEec-CcCCEEEEEEcCCCHHHCEEEEEcC
Confidence            56788876543 2356899999999999999999964

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.34  E-value=1.3e-06  Score=55.83  Aligned_cols=73  Identities=11%  Similarity=0.170  Sum_probs=48.8

Q ss_pred             HHhhhccceeeEEeecC--CCccEEEEecCCC---Cc--c-----------cccccceEEEecCCCCCCeeeEEEcccCC
Q psy534            6 AVKSIFQMLSVGDFADD--EDIPVYIWYDSYP---TH--E-----------AEEYKGRISRVDKESPFGMASLNLTKIRE   67 (145)
Q Consensus         6 ~~~~~~~~~~~~~w~~g--~p~p~~~w~k~~~---~~--~-----------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~   67 (145)
                      ..+..+..+.+-|-..+  .+.+.+.||+...   +.  +           ...+.+|+.+..+ ......+|.|.+++.
T Consensus         8 ~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~~~~   86 (116)
T cd04982           8 ITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKD-VGKSTSTLTIQNLEK   86 (116)
T ss_pred             EEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEE-CCCCEEEEEEEECCH
Confidence            44566777888887766  5677788887531   10  0           1224567665322 112468899999999


Q ss_pred             CCCEEEEEEEEE
Q psy534           68 SDQGWYECKVVF   79 (145)
Q Consensus        68 ~D~G~Y~C~~~~   79 (145)
                      +|+|.|+|.+..
T Consensus        87 ~Dsg~Y~C~~~~   98 (116)
T cd04982          87 EDSATYYCAYWE   98 (116)
T ss_pred             HHCEEEEEEEec
Confidence            999999999863

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=98.34  E-value=1.1e-06  Score=52.39  Aligned_cols=25  Identities=32%  Similarity=0.530  Sum_probs=23.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus        42 ~~L~I~~v~~~D~G~Y~C~a~N~~G   66 (78)
T cd05743          42 GTLTIRDVKESDQGAYTCEAINTRG   66 (78)
T ss_pred             EEEEECCCChHHCEEEEEEEEecCC
Confidence            4799999999999999999999999

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.33  E-value=4.2e-07  Score=55.25  Aligned_cols=33  Identities=27%  Similarity=0.500  Sum_probs=28.2

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC-----CcEEEEe
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY-----PDLLVVL  136 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g-----~~~~v~~  136 (145)
                      .+.|.|.+++.+|+|+|+|.|+|.++     .++.|..
T Consensus        46 ~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~   83 (85)
T cd05853          46 AGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRG   83 (85)
T ss_pred             CCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEec
Confidence            34899999999999999999999998     6666553

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.33  E-value=3.7e-06  Score=52.19  Aligned_cols=68  Identities=19%  Similarity=0.236  Sum_probs=42.1

Q ss_pred             hhhccceeeEEeecCC--CccEEEEecCCC---Cc--------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEE
Q psy534            8 KSIFQMLSVGDFADDE--DIPVYIWYDSYP---TH--------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE   74 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~--p~p~~~w~k~~~---~~--------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   74 (145)
                      ...+.++.+-|-..+.  ....+.||+...   +.        ....+..|+....   .....+|.|.+++.+|+|.|.
T Consensus         3 v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~---~~~~~~L~I~~~~~~Dsg~Y~   79 (98)
T cd04984           3 VSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK---SGNTASLTISGAQTEDEADYY   79 (98)
T ss_pred             cCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEc---cCCEEEEEECCCChhhCEEEE
Confidence            3456666777766543  344566766542   10        0012334555422   135778999999999999999


Q ss_pred             EEEE
Q psy534           75 CKVV   78 (145)
Q Consensus        75 C~~~   78 (145)
                      |.+.
T Consensus        80 C~~~   83 (98)
T cd04984          80 CQVW   83 (98)
T ss_pred             EEEc
Confidence            9885

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.32  E-value=1.6e-06  Score=53.77  Aligned_cols=70  Identities=21%  Similarity=0.364  Sum_probs=45.2

Q ss_pred             hhhccceeeEEeecC-CCccEEEEecCCCC----------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADD-EDIPVYIWYDSYPT----------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g-~p~p~~~w~k~~~~----------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      +..+.++.+-|-+.. .....+.||+....          .....+.+|+.+..+ ...+..+|.|.+++.+|+|.|+|.
T Consensus         4 ~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~   82 (98)
T cd05716           4 GELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDD-PDNGVFTVTLNQLRKEDAGWYWCG   82 (98)
T ss_pred             EEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEec-CCCCEEEEEEcCCCHHHCEEEEEE
Confidence            344556666665543 23445566665421          112356788876432 345678999999999999999998


Q ss_pred             EE
Q psy534           77 VV   78 (145)
Q Consensus        77 ~~   78 (145)
                      +.
T Consensus        83 ~~   84 (98)
T cd05716          83 VG   84 (98)
T ss_pred             cc
Confidence            85

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.32  E-value=1.7e-06  Score=51.34  Aligned_cols=27  Identities=22%  Similarity=0.417  Sum_probs=24.7

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ++..|.|.+++.+|+|.|+|.|.|..|
T Consensus        39 ~~~~l~i~~v~~~D~G~Y~C~A~N~~G   65 (76)
T cd05868          39 DGDTIIFSKVQERSSAVYQCNASNEYG   65 (76)
T ss_pred             cCCEEEECCCCHhhCEEEEEEEEcCCC
Confidence            345899999999999999999999999

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.31  E-value=2.2e-06  Score=54.37  Aligned_cols=71  Identities=18%  Similarity=0.244  Sum_probs=46.9

Q ss_pred             HHhhhccceeeEEeecCCCccEEEEecCCC---Cc-c----------c-ccccceEEEecCCCCCCeeeEEEcccCCCCC
Q psy534            6 AVKSIFQMLSVGDFADDEDIPVYIWYDSYP---TH-E----------A-EEYKGRISRVDKESPFGMASLNLTKIRESDQ   70 (145)
Q Consensus         6 ~~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~~-~----------~-~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   70 (145)
                      ..+..+.++.+-|-..+ +.+.+.|||...   +. +          . ....+|+.....  .....+|.|.+++.+|+
T Consensus         8 ~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~L~I~~~~~~Ds   84 (110)
T cd05899           8 LIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRP--SLTRSSLTIKSAEPEDS   84 (110)
T ss_pred             eEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECc--CCCccEEEECCCChhhC
Confidence            34567778888887777 667888988642   10 0          0 011345443221  12467899999999999


Q ss_pred             EEEEEEEEE
Q psy534           71 GWYECKVVF   79 (145)
Q Consensus        71 G~Y~C~~~~   79 (145)
                      |.|+|.+..
T Consensus        85 g~Y~Ca~~~   93 (110)
T cd05899          85 AVYLCASSL   93 (110)
T ss_pred             EEEEEEeeC
Confidence            999999863

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.30  E-value=1.5e-06  Score=50.84  Aligned_cols=24  Identities=25%  Similarity=0.466  Sum_probs=23.0

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|+|.|.|.+|
T Consensus        38 ~l~i~~v~~~D~G~Y~C~A~N~~G   61 (71)
T cd05723          38 NLQVLGLVKSDEGFYQCIAENDVG   61 (71)
T ss_pred             CEEEEcCCcccCEEEEEEEEcCCC
Confidence            688999999999999999999999

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.29  E-value=2e-06  Score=54.02  Aligned_cols=70  Identities=20%  Similarity=0.325  Sum_probs=45.8

Q ss_pred             hhccceeeEEeec-CCCccEEEEecCCC----------------CcccccccceEEEecCCCCCCeeeEEEcccCCCCCE
Q psy534            9 SIFQMLSVGDFAD-DEDIPVYIWYDSYP----------------THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQG   71 (145)
Q Consensus         9 ~~~~~~~~~~w~~-g~p~p~~~w~k~~~----------------~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G   71 (145)
                      ..+.++.+-|... ......+.|++...                ......+.+|+.+..+ ....+.+|.|.+++.+|+|
T Consensus        14 ~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~sL~i~~l~~~DsG   92 (114)
T PF07686_consen   14 QEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGN-GSQNNFSLTIKNLQPSDSG   92 (114)
T ss_dssp             ETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEE-TTTTEEEEEESSESGGGEE
T ss_pred             ecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeec-ccCCeEEEEECCCCcCcCE
Confidence            3455566666666 44555666665322                1123446677776443 2355789999999999999


Q ss_pred             EEEEEEEE
Q psy534           72 WYECKVVF   79 (145)
Q Consensus        72 ~Y~C~~~~   79 (145)
                      .|.|.+..
T Consensus        93 ~Y~C~v~~  100 (114)
T PF07686_consen   93 TYFCQVST  100 (114)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            99999964

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.29  E-value=3.1e-06  Score=50.25  Aligned_cols=26  Identities=23%  Similarity=0.367  Sum_probs=24.2

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +..|.|.+++.+|+|.|.|.|.|.+|
T Consensus        37 ~~~L~I~~~~~~D~G~Y~C~a~N~~G   62 (77)
T cd05760          37 ERTLTLRSAGPDDSGLYYCCAHNAFG   62 (77)
T ss_pred             CCEEEEeeCCcccCEEEEEEEEeCCC
Confidence            34899999999999999999999998

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.29  E-value=1.6e-06  Score=50.37  Aligned_cols=26  Identities=27%  Similarity=0.488  Sum_probs=24.5

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ...|.|.+++.+|+|.|+|.|.|.+|
T Consensus        35 ~~~L~I~~~~~~D~G~Y~C~a~N~~G   60 (69)
T cd05746          35 EGYLAIRDVGVADQGRYECVARNTIG   60 (69)
T ss_pred             CCEEEECcCChhhCEEEEEEEECCCC
Confidence            44899999999999999999999999

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.28  E-value=2.4e-06  Score=50.86  Aligned_cols=25  Identities=40%  Similarity=0.445  Sum_probs=23.9

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|.+|
T Consensus        47 ~~L~I~~~~~~D~G~Y~C~a~N~~G   71 (81)
T cd05765          47 GQLVIYNAQPQDAGLYTCTARNSGG   71 (81)
T ss_pred             cEEEEccCCcccCEEEEEEEecCCc
Confidence            4899999999999999999999999

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.28  E-value=1.6e-06  Score=52.55  Aligned_cols=25  Identities=32%  Similarity=0.545  Sum_probs=23.9

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus        51 ~~L~i~~~~~~D~G~Y~C~a~N~~G   75 (85)
T cd05728          51 GDLRITKLSLSDSGMYQCVAENKHG   75 (85)
T ss_pred             CEEEEeeCCHHHCEEEEEEEECCCC
Confidence            4899999999999999999999999

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.28  E-value=2.3e-06  Score=54.79  Aligned_cols=72  Identities=17%  Similarity=0.213  Sum_probs=47.5

Q ss_pred             HhhhccceeeEEeecCC-CccEEEEecCCCC-----------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEE
Q psy534            7 VKSIFQMLSVGDFADDE-DIPVYIWYDSYPT-----------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE   74 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~-p~p~~~w~k~~~~-----------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   74 (145)
                      .+..+..+.+-|...+. ....+.||+...-           .....+++|+.+..+ ....+.+|.|.+++.+|+|.|+
T Consensus        10 ~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~~~~~Dsg~Y~   88 (116)
T cd07706          10 SVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQ-KAQKSISLTISALQLEDSAKYF   88 (116)
T ss_pred             EEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEe-ccCCEEEEEECCCCHHHCEEEE
Confidence            35566777777776643 3455777765310           012245678876421 2345789999999999999999


Q ss_pred             EEEEE
Q psy534           75 CKVVF   79 (145)
Q Consensus        75 C~~~~   79 (145)
                      |.+..
T Consensus        89 C~~~~   93 (116)
T cd07706          89 CALST   93 (116)
T ss_pred             EEEEC
Confidence            99874

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.28  E-value=2.7e-06  Score=51.21  Aligned_cols=26  Identities=35%  Similarity=0.598  Sum_probs=24.3

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLYP  130 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g~  130 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|.
T Consensus        51 ~~L~I~~~~~~D~G~Y~C~a~N~~G~   76 (86)
T cd05724          51 GNLLIAEARKSDEGTYKCVATNMVGE   76 (86)
T ss_pred             CEEEEeECCcccCEEEEEEEEeccCc
Confidence            48999999999999999999999983

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.27  E-value=6e-06  Score=50.20  Aligned_cols=66  Identities=18%  Similarity=0.150  Sum_probs=40.4

Q ss_pred             cceeeEEeecCCC--ccEEEEecCCCCcccccccc--eEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           12 QMLSVGDFADDED--IPVYIWYDSYPTHEAEEYKG--RISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        12 ~~~~~~~w~~g~p--~p~~~w~k~~~~~~~~~~~~--R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      .++.+.|-+.+.+  ...+.|...+..........  |.....  .....+.|.|.+++.+|+|.|.|.+.+
T Consensus         2 e~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~--~~~~~s~L~I~~~~~~DsG~Y~C~a~n   71 (86)
T cd05862           2 EKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQE--HTELSSTLTIENVTLSDLGRYTCTASS   71 (86)
T ss_pred             CcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccc--cceeeeEEEEecCCcccCEEEEEEEee
Confidence            4677889887654  55778966543211100001  111100  112367899999999999999999975

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.26  E-value=2.8e-06  Score=49.27  Aligned_cols=57  Identities=21%  Similarity=0.344  Sum_probs=39.6

Q ss_pred             eeeEEeecCCC-ccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           14 LSVGDFADDED-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        14 ~~~~~w~~g~p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      +.+.|.+.+.+ .+.+.|+... ..   ....+...     .....+|.|.++..+|.|.|.|.|.+
T Consensus        18 ~~l~C~~~~~~~~~~~~W~~~~-~~---~~~~~~~~-----~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   18 VTLTCSAEGGPPPPSISWYDSN-PS---FNSNSRGS-----SSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEESSEESSEEEEEETEE-EE---EEEEEEEE-----EEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EEEEEEEccccCCeEEEEEecC-Cc---eeeeeeec-----cceeeEEEEccCCHHhCcEEEEEEEC
Confidence            78889999776 8899999111 10   01111111     12388899999999999999999864

...

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.25  E-value=1.3e-06  Score=50.75  Aligned_cols=27  Identities=19%  Similarity=0.287  Sum_probs=24.9

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+..|.|.++..+|+|.|+|.|+|..|
T Consensus        29 ~~~~L~i~~v~~~D~G~YtC~a~N~~g   55 (67)
T cd05863          29 SQHSLQIKDVTEASAGTYTLVLWNSAA   55 (67)
T ss_pred             CcCEEEECCCCHHHCEEEEEEEEECCc
Confidence            345899999999999999999999998

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.23  E-value=3.6e-06  Score=53.01  Aligned_cols=71  Identities=17%  Similarity=0.167  Sum_probs=45.7

Q ss_pred             HHHhhhccceeeEEeecCCC-ccEEEEecCCC---C--cc------cccccceEEEecCCCCCCeeeEEEcccCCCCCEE
Q psy534            5 FAVKSIFQMLSVGDFADDED-IPVYIWYDSYP---T--HE------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGW   72 (145)
Q Consensus         5 ~~~~~~~~~~~~~~w~~g~p-~p~~~w~k~~~---~--~~------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~   72 (145)
                      +.+++.+..+.+-|-+.+.. ...+.||+...   .  .+      ......|+....   .....+|.|.+++.+|+|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~~~~~Dsg~   85 (106)
T cd04980           9 TLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG---SGTDFTLTISRVEPEDAAV   85 (106)
T ss_pred             cEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec---cCCEEEEEECCCChHHCEE
Confidence            34556778888888776554 56688887541   0  00      011123444321   2346789999999999999


Q ss_pred             EEEEEE
Q psy534           73 YECKVV   78 (145)
Q Consensus        73 Y~C~~~   78 (145)
                      |+|.+.
T Consensus        86 Y~Ca~~   91 (106)
T cd04980          86 YYCQQY   91 (106)
T ss_pred             EEEEEe
Confidence            999885

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.23  E-value=1.6e-06  Score=52.93  Aligned_cols=25  Identities=24%  Similarity=0.348  Sum_probs=23.7

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.++..+|+|.|+|.|.|.+|
T Consensus        47 s~L~I~~~~~~D~G~YtC~A~N~~G   71 (88)
T cd05735          47 STLQILPTVREDSGFFSCHAINSYG   71 (88)
T ss_pred             EEEEECCCCcccCEEEEEEEEcCCC
Confidence            3799999999999999999999999

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.22  E-value=2.2e-06  Score=49.74  Aligned_cols=26  Identities=35%  Similarity=0.671  Sum_probs=24.4

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +..|.|.+++.+|+|.|+|.|.|..|
T Consensus        35 ~~~L~i~~v~~~D~G~Y~C~a~N~~G   60 (71)
T cd05731          35 NKTLKIDNVSEEDDGEYRCTASNSLG   60 (71)
T ss_pred             CCEEEECCCCHHHCEEEEEEEEeCCc
Confidence            34899999999999999999999999

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=98.22  E-value=3.5e-06  Score=51.73  Aligned_cols=25  Identities=24%  Similarity=0.388  Sum_probs=23.7

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|.+|
T Consensus        58 ~~L~I~~v~~~D~G~Y~C~a~N~~G   82 (92)
T cd05737          58 ASLTIKGVSSEDSGKYGIVVKNKYG   82 (92)
T ss_pred             EEEEEccCChhhCEEEEEEEEECCC
Confidence            3799999999999999999999999

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.22  E-value=2.8e-06  Score=50.59  Aligned_cols=25  Identities=28%  Similarity=0.534  Sum_probs=23.7

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus        48 ~~L~i~~v~~~D~G~Y~C~a~N~~G   72 (82)
T cd05856          48 WTLSLKNLKPEDSGKYTCHVSNRAG   72 (82)
T ss_pred             EEEEEccCChhhCEEEEEEEEcCCc
Confidence            4799999999999999999999999

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.21  E-value=5.9e-06  Score=51.84  Aligned_cols=47  Identities=23%  Similarity=0.393  Sum_probs=33.6

Q ss_pred             cEEEEecCCCCccccc---cc-ceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           26 PVYIWYDSYPTHEAEE---YK-GRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        26 p~~~w~k~~~~~~~~~---~~-~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.|||++.....+.   +. .|++.       ....|.|.++..+|+|.|.|++.+
T Consensus        41 ~~v~WyK~~~~~~~~~~~~~~~~Ri~~-------~~~~Lwf~Pa~~eDSG~Y~C~~rN   91 (104)
T cd05896          41 LSLMWYKSSGDGEEPIEIIFDGVRMSK-------EEDSIWFRPAELQDSGLYTCVLRN   91 (104)
T ss_pred             ceEEEEECCCCCCCCCcccccceeEEE-------eCCEEEEEeCChhhCeEEEEEECC
Confidence            4789999963211111   21 35553       378899999999999999999975

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=98.21  E-value=1.2e-06  Score=52.04  Aligned_cols=24  Identities=33%  Similarity=0.343  Sum_probs=23.4

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +|.|.+++.+|+|.|+|.|.|.+|
T Consensus        42 ~L~I~~~~~~D~G~Y~C~A~N~~G   65 (75)
T cd05892          42 TLLIKNVNKKDAGWYTVSAVNEAG   65 (75)
T ss_pred             EEEECCCChhhCEEEEEEEEcCcC
Confidence            799999999999999999999999

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.20  E-value=3.5e-06  Score=50.27  Aligned_cols=26  Identities=27%  Similarity=0.514  Sum_probs=24.0

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +..|.|.+++.+|+|.|+|.|.|..|
T Consensus        44 ~~~L~I~~~~~~DsG~Y~C~a~n~~g   69 (79)
T cd04973          44 GEEVQIKDAVPRDSGLYACVTSSPSG   69 (79)
T ss_pred             CCEEEECCCChhhCEEEEEEEeCCCC
Confidence            34899999999999999999999988

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.20  E-value=2.3e-06  Score=50.47  Aligned_cols=27  Identities=22%  Similarity=0.449  Sum_probs=24.7

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+..|.|.+++.+|+|.|+|.|.|..|
T Consensus        38 ~~~~L~I~~~~~~D~G~Y~C~A~N~~G   64 (75)
T cd05763          38 EDDVFFIVDVKIEDTGVYSCTAQNTAG   64 (75)
T ss_pred             CCCEEEEeeCCcccCEEEEEEEEcCCC
Confidence            344899999999999999999999998

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.20  E-value=1.4e-06  Score=50.50  Aligned_cols=26  Identities=35%  Similarity=0.625  Sum_probs=24.3

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +..|.|.+++.+|+|.|+|.|.|.+|
T Consensus        34 ~~~L~I~~v~~~D~G~Y~C~a~N~~G   59 (69)
T cd05725          34 DKSLKIRNVTAGDEGSYTCEAENMVG   59 (69)
T ss_pred             CCEEEECcCChhHCEEEEEEEEcCCC
Confidence            34899999999999999999999999

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.20  E-value=1.9e-06  Score=52.29  Aligned_cols=25  Identities=36%  Similarity=0.539  Sum_probs=23.9

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +.|.|.+++.+|+|.|+|.|.|.+|
T Consensus        47 ~~L~I~~v~~~D~G~YtC~A~n~~g   71 (85)
T cd05854          47 GDLVIVNAQLSHAGTYTCTAQTVVD   71 (85)
T ss_pred             eEEEEccCChhhCeEEEEEEecCCC
Confidence            4899999999999999999999999

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>PHA03376 BARF1; Provisional

Probab=98.20  E-value=6.8e-06  Score=56.60  Aligned_cols=64  Identities=11%  Similarity=-0.028  Sum_probs=43.7

Q ss_pred             ceeeEEeecCCC-cc--EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           13 MLSVGDFADDED-IP--VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        13 ~~~~~~w~~g~p-~p--~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      +-+.+.|+|..| .+  .+.+...+.....-++++|..++.+   .++.+|.|.+++.+|.|.|+|.+..
T Consensus        42 ~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~---~gnvsLvI~~l~lSDdGtY~C~fQk  108 (221)
T PHA03376         42 PEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS---ANTFFLVVTAANISHDGNYLCRMKL  108 (221)
T ss_pred             CceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEec---CCeEEEEEEeeeecCCceEEEEEEc
Confidence            456677888444 22  2333333222233468889888764   3799999999999999999999954

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.19  E-value=7e-06  Score=49.37  Aligned_cols=25  Identities=24%  Similarity=0.453  Sum_probs=23.5

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|.+|
T Consensus        51 ~~l~i~~~~~~D~G~Y~C~a~N~~G   75 (85)
T cd05857          51 WSLIMESVVPSDKGNYTCVVENEYG   75 (85)
T ss_pred             eEEEEccCCcccCEEEEEEEEeCCC
Confidence            3799999999999999999999999

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>smart00409 IG Immunoglobulin

Probab=98.18  E-value=1.1e-05  Score=47.31  Aligned_cols=65  Identities=18%  Similarity=0.261  Sum_probs=48.2

Q ss_pred             hhhccceeeEEeecCCCccEEEEecC-CCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDS-YPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~-~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+.++.+.|-+.+.+.+.+.|+++ ... +.  ...+..+...   ....+|.|.+++.+|+|.|.|.+.
T Consensus         6 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~-v~--~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~v~   71 (86)
T smart00409        6 VKEGESVTLSCEVSGSPPPEVTWYKQGGKL-LA--ESGRFSVSRS---GSNSTLTISNVTPEDSGTYTCAAT   71 (86)
T ss_pred             EeCCCeEEEEEEEccCCCCeEEEEECCCEE-cC--CCCcEEEEEc---CCeeEEEEEeeccccCeEEEEEEE
Confidence            34577888999998888889999988 432 21  3345554332   125789999999999999999997

>smart00410 IG_like Immunoglobulin like

Probab=98.18  E-value=1.1e-05  Score=47.31  Aligned_cols=65  Identities=18%  Similarity=0.261  Sum_probs=48.2

Q ss_pred             hhhccceeeEEeecCCCccEEEEecC-CCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDS-YPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~-~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+.++.+.|-+.+.+.+.+.|+++ ... +.  ...+..+...   ....+|.|.+++.+|+|.|.|.+.
T Consensus         6 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~-v~--~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~v~   71 (86)
T smart00410        6 VKEGESVTLSCEVSGSPPPEVTWYKQGGKL-LA--ESGRFSVSRS---GSNSTLTISNVTPEDSGTYTCAAT   71 (86)
T ss_pred             EeCCCeEEEEEEEccCCCCeEEEEECCCEE-cC--CCCcEEEEEc---CCeeEEEEEeeccccCeEEEEEEE
Confidence            34577888999998888889999988 432 21  3345554332   125789999999999999999997

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=98.18  E-value=4.2e-06  Score=51.61  Aligned_cols=25  Identities=36%  Similarity=0.461  Sum_probs=23.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.++..+|+|.|+|.|.|..|
T Consensus        56 ~~L~I~~v~~~D~G~Y~C~A~N~~G   80 (92)
T cd05866          56 SRLTIYNANIEDAGIYRCQATDAKG   80 (92)
T ss_pred             eEEEEecCChHHCEEEEEEEEcCCC
Confidence            3799999999999999999999998

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.17  E-value=2.8e-06  Score=51.11  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=23.4

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|+|.|+|.+|
T Consensus        47 ~L~I~~~~~~D~G~YtC~A~N~~G   70 (81)
T cd04971          47 CLQFDNPTHVNNGNYTLVASNEYG   70 (81)
T ss_pred             EEEECCCCcccCeEEEEEEEeCCC
Confidence            799999999999999999999999

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.16  E-value=4.9e-06  Score=50.81  Aligned_cols=25  Identities=32%  Similarity=0.389  Sum_probs=23.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|.|.|+|.|.|.+|
T Consensus        56 ~~L~I~~v~~~D~g~Y~C~A~N~~G   80 (90)
T cd04972          56 YNLQLSNITSETQTTVTCTAENPVG   80 (90)
T ss_pred             EEEEEecCCcccCEEEEEEEECCCC
Confidence            4799999999999999999999999

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.15  E-value=2.4e-06  Score=52.31  Aligned_cols=25  Identities=36%  Similarity=0.626  Sum_probs=23.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|.+|
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd04974          55 EVLYLRNVSFDDAGEYTCLAGNSIG   79 (90)
T ss_pred             ceEEEeccccccCcEEEEEeecccC
Confidence            4799999999999999999999999

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.15  E-value=9.1e-06  Score=53.67  Aligned_cols=22  Identities=41%  Similarity=0.591  Sum_probs=19.8

Q ss_pred             eeEEEcccCCCCCEEEEEEEEE
Q psy534           58 ASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        58 ~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      .+|.|.+++.+|+|.|.|.+.+
T Consensus         1 asL~i~~v~~~D~G~Y~C~~~~   22 (139)
T cd05771           1 ASLTLPGLTVHDEGTYICSVST   22 (139)
T ss_pred             CeEEECCCCHHHCEEEEEEEEc
Confidence            4799999999999999999854

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.14  E-value=1.4e-05  Score=49.12  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=23.3

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|+|.|.|.+|
T Consensus        59 ~L~I~~~~~~D~G~Y~C~a~N~~G   82 (92)
T cd05891          59 SLTIKGVTSEDSGKYSINVKNKYG   82 (92)
T ss_pred             EEEECCCChhhCEEEEEEEEeCCC
Confidence            799999999999999999999999

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=98.13  E-value=1.8e-06  Score=51.15  Aligned_cols=24  Identities=29%  Similarity=0.201  Sum_probs=23.2

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|+|.|.|.+|
T Consensus        42 ~L~I~~v~~~D~G~Y~C~A~N~~G   65 (75)
T cd05893          42 CLLIQGATKEDAGWYTVSAKNEAG   65 (75)
T ss_pred             EEEECCCCHHHCEEEEEEEEcCCC
Confidence            599999999999999999999999

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.13  E-value=1.8e-06  Score=50.57  Aligned_cols=27  Identities=30%  Similarity=0.550  Sum_probs=24.8

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+..|.|.++..+|+|.|+|.|.|.+|
T Consensus        32 ~~~~L~I~~v~~~D~G~YtC~a~N~~G   58 (70)
T cd05864          32 RGVHLTIYEVTEKDAGNYTVVLTNPIT   58 (70)
T ss_pred             cCCEEEECcCCHHHCEEEEEEEEECCC
Confidence            345899999999999999999999998

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.13  E-value=2.5e-06  Score=51.54  Aligned_cols=26  Identities=35%  Similarity=0.561  Sum_probs=24.2

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+.|.|.+++.+|+|.|+|.|.|.+|
T Consensus        46 ~~~L~I~~v~~~D~G~Y~C~a~n~~g   71 (85)
T cd04970          46 NGDLMIRNAQLKHAGKYTCTAQTVVD   71 (85)
T ss_pred             cceEEEccCCHHhCeeeEEEEecCCC
Confidence            34899999999999999999999998

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.13  E-value=2.2e-05  Score=48.98  Aligned_cols=73  Identities=16%  Similarity=0.092  Sum_probs=50.6

Q ss_pred             HhhhccceeeEEeecCCCcc-EEEEecCCCCcccccccceEEEecCCCC-CCeeeEEEcccCCCC-CEEEEEEEEEe
Q psy534            7 VKSIFQMLSVGDFADDEDIP-VYIWYDSYPTHEAEEYKGRISRVDKESP-FGMASLNLTKIRESD-QGWYECKVVFL   80 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p-~~~w~k~~~~~~~~~~~~R~~~~~~~~~-~~~~sL~I~~v~~~D-~G~Y~C~~~~~   80 (145)
                      .+..+..+.+.|-+.+.|.| .+.|..++. .++....+|+.+.+.... .....|.|.++..+| .|.|.|.|.|.
T Consensus        12 ~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~-~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~   87 (98)
T cd05898          12 YAVRGERGKVKCFIGSTPPPDRIAWAWKEN-VLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNS   87 (98)
T ss_pred             EEeCCCcEEEEEEEccCCCCcEEEEEEccc-cccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeC
Confidence            34567788899999888776 457766553 233334467766543222 236779999998878 79999999863

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.12  E-value=1.6e-06  Score=52.98  Aligned_cols=25  Identities=36%  Similarity=0.636  Sum_probs=23.9

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|.+|
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd05858          55 EVLYLRNVTFEDAGEYTCLAGNSIG   79 (90)
T ss_pred             eEEEEccCCHHHCEEEEEEEEeCCC
Confidence            4799999999999999999999999

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=98.12  E-value=4.8e-06  Score=49.89  Aligned_cols=24  Identities=25%  Similarity=0.218  Sum_probs=23.4

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.++..+|+|.|+|+|+|.+|
T Consensus        45 ~L~i~~~~~~D~G~YtC~A~N~~G   68 (79)
T cd05855          45 CLQLDNPTHLNNGIYTLVAKNEYG   68 (79)
T ss_pred             EEEECCCCcccCEEEEEEEEcCCc
Confidence            799999999999999999999999

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.11  E-value=6.3e-06  Score=49.94  Aligned_cols=26  Identities=35%  Similarity=0.645  Sum_probs=24.1

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ...|.|.+++.+|+|.|+|.|+|..|
T Consensus        55 ~~~L~I~~v~~~D~G~Y~C~~~n~~g   80 (90)
T PF07679_consen   55 SSSLTIKNVTREDAGTYTCVASNSSG   80 (90)
T ss_dssp             EEEEEESSESGGGSEEEEEEEEETTE
T ss_pred             eeEEccCCCChhhCEEEEEEEEECCC
Confidence            35799999999999999999999987

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.11  E-value=1.2e-05  Score=49.38  Aligned_cols=64  Identities=14%  Similarity=0.139  Sum_probs=45.6

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +...+..+.+.|... .+...+.|+|++....   . .+..     .....+.+.|.+|+.+|+|.|+|+..+.
T Consensus        12 vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~---~-~~~~-----~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          12 VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFA---V-KKPP-----EPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             ccCCCCcEEEEEecC-CCCCEEEEEECCCCcc---c-cccC-----CCceeEEEEccCCChhHCEEEEEEEECC
Confidence            345778899999776 5677899999875311   1 1111     1133778999999999999999999753

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.11  E-value=3.3e-06  Score=49.60  Aligned_cols=26  Identities=31%  Similarity=0.299  Sum_probs=24.3

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ...|.|.+++.+|+|.|+|.|.|.+|
T Consensus        39 ~~~L~I~~~~~~D~G~Y~C~a~N~~G   64 (74)
T cd05748          39 STSLVIKNAERSDSGKYTLTLKNPAG   64 (74)
T ss_pred             eEEEEECCCCcCcCEEEEEEEECCCc
Confidence            34799999999999999999999999

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=98.10  E-value=9.8e-06  Score=49.68  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=23.9

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|.+|
T Consensus        59 ~~L~i~~~~~~D~G~Y~C~a~N~~G   83 (92)
T cd05747          59 STFEISKVQMSDEGNYTVVVENSEG   83 (92)
T ss_pred             eEEEECCCCcccCEeEEEEEEcCCC
Confidence            4899999999999999999999999

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.09  E-value=3.9e-06  Score=49.09  Aligned_cols=27  Identities=30%  Similarity=0.540  Sum_probs=24.7

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+..|.|.+++.+|+|.|+|.|.|..|
T Consensus        33 ~~~~L~I~~v~~~D~G~YtC~a~N~~g   59 (71)
T cd04976          33 SGHSLTIKDVTEEDAGNYTVVLTNKQA   59 (71)
T ss_pred             CCCEEEECcCCHHHCEEEEEEEEcCCc
Confidence            345899999999999999999999998

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.07  E-value=7e-06  Score=49.56  Aligned_cols=26  Identities=27%  Similarity=0.460  Sum_probs=23.8

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +..|.|.+++.+|+|.|+|.|.+..|
T Consensus        47 ~~~l~I~~~~~~dsG~Y~C~~~~~~~   72 (83)
T cd05753          47 NSNLSIPQATLSDSGSYHCSGIIGSY   72 (83)
T ss_pred             CceEEECccCHHHCEEEEEEEEeCCc
Confidence            34799999999999999999999987

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.07  E-value=1.4e-05  Score=49.30  Aligned_cols=25  Identities=44%  Similarity=0.607  Sum_probs=22.4

Q ss_pred             cEEEEcccC-CCCCeeeEEEEecCCC
Q psy534          105 TELRISNIR-SQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~-~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.++. .+|+|.|+|.|.|.+|
T Consensus        58 g~L~i~~~~~~~D~G~Y~C~A~N~~G   83 (94)
T cd05848          58 GNLIISNPSEVKDSGRYQCLATNSIG   83 (94)
T ss_pred             CeEEEccCCccCcCEEEEEEEEcCCC
Confidence            389998885 6999999999999999

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=98.06  E-value=4.1e-06  Score=49.55  Aligned_cols=24  Identities=33%  Similarity=0.253  Sum_probs=23.3

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +|.|.+++.+|+|.|+|.|.|.+|
T Consensus        42 ~L~I~~~~~~D~G~Y~C~a~N~~G   65 (75)
T cd05744          42 CLLIQNANKEDAGWYTVSAVNEAG   65 (75)
T ss_pred             EEEECCCCcccCEEEEEEEEcCCC
Confidence            699999999999999999999999

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=98.06  E-value=3.7e-06  Score=52.72  Aligned_cols=25  Identities=28%  Similarity=0.530  Sum_probs=24.0

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|+|..|
T Consensus        65 ~~L~i~~v~~~D~G~Ytc~A~N~~G   89 (101)
T cd04975          65 SELKLVRLKESEAGTYTFLASNSDA   89 (101)
T ss_pred             EEEEEeecCHhhCeeEEEEEECCCc
Confidence            5799999999999999999999999

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.05  E-value=1e-05  Score=48.34  Aligned_cols=25  Identities=24%  Similarity=0.460  Sum_probs=21.8

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVL  128 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~  128 (145)
                      .+..|.|.++ .+|+|.|+|.|.|..
T Consensus        45 ~~~~l~i~~~-~~dsG~Y~C~a~~~~   69 (78)
T cd05752          45 TTNSYRIRAA-NNDSGEYRCQTQGSS   69 (78)
T ss_pred             cCCeEEEeec-ccCCEEeEEECCCCc
Confidence            4458999999 999999999999864

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.05  E-value=5.3e-06  Score=51.54  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=23.3

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|.+|
T Consensus        60 ~~L~I~~v~~~D~G~YtC~A~N~~~   84 (96)
T cd05865          60 STLTIYNANIDDAGIYKCVVSNEDE   84 (96)
T ss_pred             eEEEEeccChhhCEEEEEEEEcCCC
Confidence            4899999999999999999999984

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.02  E-value=8.4e-06  Score=47.97  Aligned_cols=26  Identities=35%  Similarity=0.543  Sum_probs=24.2

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLYP  130 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g~  130 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|.
T Consensus        38 g~L~i~~~~~~D~G~Y~C~a~N~~G~   63 (74)
T cd05738          38 GALQIENSEESDQGKYECVATNSAGT   63 (74)
T ss_pred             cEEEECCCChhhCEEEEEEEECCCCc
Confidence            37999999999999999999999994

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.01  E-value=5.8e-06  Score=50.85  Aligned_cols=25  Identities=36%  Similarity=0.504  Sum_probs=23.4

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+|.|.+++.+|+|.|+|.|.|..|
T Consensus        57 ~~L~I~~v~~~D~G~Y~C~A~N~~g   81 (92)
T cd04977          57 STLTIYNANIEDAGIYKCVATDAKG   81 (92)
T ss_pred             EEEEEecCCcccCEEEEEEEEcCCC
Confidence            4799999999999999999999976

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.01  E-value=1.3e-05  Score=47.26  Aligned_cols=27  Identities=48%  Similarity=0.835  Sum_probs=24.7

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+..|.|.+++.+|+|.|+|.|.|..|
T Consensus        37 ~~~~l~I~~~~~~D~G~Y~C~a~N~~G   63 (76)
T cd05736          37 NGSELHISNVRYEDTGAYTCIAKNEAG   63 (76)
T ss_pred             CCCEEEECcCCcccCEEEEEEEEcCCC
Confidence            445799999999999999999999999

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd00096 Ig Immunoglobulin domain

Probab=98.00  E-value=3.5e-05  Score=43.02  Aligned_cols=63  Identities=16%  Similarity=0.296  Sum_probs=41.9

Q ss_pred             eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      .+.|.+.+.+.+.+.|++++.........  ..............|.|.+++.+|.|.|.|.+..
T Consensus         2 ~l~C~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~   64 (74)
T cd00096           2 TLTCLASGPPPPTITWLKNGKPLPSSVLT--RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASN   64 (74)
T ss_pred             EEEEEecCCCCCcEEEEECCEECCCcccE--EeccccCcceeEEEEEECccCcccCcEEEEEEec
Confidence            46788888778889999887432111110  0111111234478899999999999999999864

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=97.99  E-value=3.4e-05  Score=42.70  Aligned_cols=27  Identities=33%  Similarity=0.653  Sum_probs=23.8

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ....|.|.+++.+|+|.|+|.+.|..|
T Consensus        37 ~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408       37 SGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            344899999999999999999999875

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=97.98  E-value=7.3e-06  Score=49.35  Aligned_cols=25  Identities=36%  Similarity=0.545  Sum_probs=23.6

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus        49 s~L~I~~v~~~DsG~Y~C~a~n~~~   73 (84)
T cd05742          49 STLTIPNATLKDSGTYTCAASSGTM   73 (84)
T ss_pred             EEEEECCCChhhCEEEEEEEccCCC
Confidence            3799999999999999999999998

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=97.98  E-value=7.1e-06  Score=50.94  Aligned_cols=25  Identities=28%  Similarity=0.558  Sum_probs=23.9

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|.+|
T Consensus        64 ~~L~I~~v~~~D~G~Y~C~A~N~~G   88 (98)
T cd05870          64 SSLHIKDVKLSDSGRYDCEAASRIG   88 (98)
T ss_pred             eEEEEeeCCcCCCEEEEEEEeccCC
Confidence            4799999999999999999999999

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=97.97  E-value=1.2e-05  Score=48.41  Aligned_cols=26  Identities=31%  Similarity=0.580  Sum_probs=24.3

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +..|.|.+++.+|+|.|+|.|.|..|
T Consensus        51 ~~~L~I~~v~~~DsG~Y~C~a~n~~g   76 (85)
T cd05754          51 NGILTIRNVQLSDAGTYVCTGSNMLD   76 (85)
T ss_pred             CCEEEECCCCHHHCEEEEEEEeccCC
Confidence            34899999999999999999999998

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=97.97  E-value=3.1e-05  Score=47.74  Aligned_cols=26  Identities=35%  Similarity=0.538  Sum_probs=22.5

Q ss_pred             cEEEEcccC-CCCCeeeEEEEecCCCC
Q psy534          105 TELRISNIR-SQDIGDYTCLATHVLYP  130 (145)
Q Consensus       105 ~~L~i~~v~-~~d~G~Y~C~a~n~~g~  130 (145)
                      +.|.|.++. .+|+|.|+|.|.|.+|.
T Consensus        58 g~L~I~~~~~~~D~G~Y~C~A~N~~G~   84 (94)
T cd05850          58 GNLVINNPQKARDAGSYQCLAINRCGT   84 (94)
T ss_pred             CeEEEccCCccCcCEEEEEEEEcCcCc
Confidence            379998865 69999999999999993

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=97.96  E-value=8e-06  Score=50.26  Aligned_cols=26  Identities=23%  Similarity=0.515  Sum_probs=24.2

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLYP  130 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g~  130 (145)
                      ..|.|.+++.+|+|.|+|.|.|.+|.
T Consensus        62 ~~L~I~~v~~~D~G~Y~C~a~N~~G~   87 (96)
T cd05732          62 SSLTLKDVQLTDAGRYDCEASNRIGG   87 (96)
T ss_pred             EEEEECcCCcCcCEEeEEEEEeCCCC
Confidence            37999999999999999999999993

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=97.94  E-value=1.7e-05  Score=46.72  Aligned_cols=27  Identities=37%  Similarity=0.632  Sum_probs=24.5

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCCCc
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLYPD  131 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~  131 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|..
T Consensus        44 ~~L~I~~~~~~DsG~Y~C~a~N~~g~~   70 (76)
T cd05895          44 SELQISKASLADNGEYKCMVSSKLGND   70 (76)
T ss_pred             EEEEECcCCcccCEEEEEEEEeCCCce
Confidence            479999999999999999999999843

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=97.94  E-value=7.9e-06  Score=51.22  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=23.9

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus        65 s~L~I~~v~~~D~G~Ytc~A~N~~g   89 (101)
T cd05859          65 SKLKLIRAKEEDSGLYTALAQNEDA   89 (101)
T ss_pred             cEEEEeeCCHHHCEEEEEEEEcCCc
Confidence            4899999999999999999999998

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=97.93  E-value=9.8e-06  Score=50.20  Aligned_cols=26  Identities=27%  Similarity=0.567  Sum_probs=24.1

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLYP  130 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g~  130 (145)
                      ..|.|.+++.+|+|.|+|.|.|.+|.
T Consensus        63 ~~L~I~~v~~~D~G~Y~C~A~N~~G~   88 (97)
T cd05869          63 SSLTLKYIQYTDAGEYLCTASNTIGQ   88 (97)
T ss_pred             EEEEEecCccCcCEEEEEEEecCCCC
Confidence            37999999999999999999999993

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=97.93  E-value=1.2e-05  Score=47.76  Aligned_cols=25  Identities=24%  Similarity=0.392  Sum_probs=23.9

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+|.|.++..+|+|.|.|.|.|.+|
T Consensus        44 ~~L~I~~v~~~D~G~Y~C~a~N~~G   68 (79)
T cd05734          44 GSLLIKHVLEEDSGYYLCKVSNDVG   68 (79)
T ss_pred             CeEEECcCCcccCEEEEEEEEeCCC
Confidence            4899999999999999999999999

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=97.90  E-value=1.3e-05  Score=46.91  Aligned_cols=26  Identities=35%  Similarity=0.707  Sum_probs=24.2

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLYP  130 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g~  130 (145)
                      ..|.|.+++.+|+|.|+|.|.|.+|.
T Consensus        43 ~~L~I~~~~~~D~G~Y~C~a~N~~G~   68 (75)
T cd05750          43 SELQINKAKLADSGEYTCVVENILGN   68 (75)
T ss_pred             EEEEEccCCcccCeEEEEEEEEcCCc
Confidence            47999999999999999999999994

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=97.90  E-value=3.4e-05  Score=48.94  Aligned_cols=25  Identities=32%  Similarity=0.422  Sum_probs=23.1

Q ss_pred             cEEEEcccC-CCCCeeeEEEEecCCC
Q psy534          105 TELRISNIR-SQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~-~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++ .+|.|.|+|.|.|.+|
T Consensus        69 s~L~I~~v~~~~D~G~Y~C~A~N~~G   94 (109)
T cd05773          69 SILTIINVSAALDYALFTCTAHNSLG   94 (109)
T ss_pred             eEEEECcCCccCCCEEEEEEEEeCCc
Confidence            479999997 5999999999999999

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.90  E-value=3.5e-05  Score=47.45  Aligned_cols=28  Identities=36%  Similarity=0.633  Sum_probs=25.1

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLYP  130 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  130 (145)
                      .+..|.|.+++.+|+|.|+|.|.|..+.
T Consensus        50 ~~~~L~I~~v~~~DsG~YtC~~~n~~~~   77 (92)
T cd05757          50 KGSKLLIQNVTEEDAGNYTCKLTFTHNG   77 (92)
T ss_pred             cCCEEEEeeCChhhCEEEEEEEEecCCC
Confidence            4458999999999999999999999873

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.90  E-value=4.6e-05  Score=48.10  Aligned_cols=70  Identities=17%  Similarity=0.193  Sum_probs=42.4

Q ss_pred             hhhccceeeEEeecCC-CccEEEEecCCCC--ccc----------------ccc-cceEEEecCCCCCCeeeEEEcccCC
Q psy534            8 KSIFQMLSVGDFADDE-DIPVYIWYDSYPT--HEA----------------EEY-KGRISRVDKESPFGMASLNLTKIRE   67 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~-p~p~~~w~k~~~~--~~~----------------~~~-~~R~~~~~~~~~~~~~sL~I~~v~~   67 (145)
                      ++++.++.+.|-..+. ....+.||+...-  ...                .++ ..|++... ........|.|.+++.
T Consensus         3 v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~-~~~~~~~~L~I~~~~~   81 (107)
T cd07700           3 VQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRV-TSDSSRYRLHINRVKP   81 (107)
T ss_pred             EcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEE-ECCCCEEEEEECCCCH
Confidence            4567778888877653 3456788876421  000                011 23443311 1122356799999999


Q ss_pred             CCCEEEEEEEE
Q psy534           68 SDQGWYECKVV   78 (145)
Q Consensus        68 ~D~G~Y~C~~~   78 (145)
                      +|+|.|+|...
T Consensus        82 ~Dsg~YyCa~~   92 (107)
T cd07700          82 EDSGTYFCMTV   92 (107)
T ss_pred             HHCEEEEEeEc
Confidence            99999999874

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=97.90  E-value=4.6e-05  Score=44.28  Aligned_cols=22  Identities=36%  Similarity=0.616  Sum_probs=19.7

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.++.  |+|.|+|.|.|.+|
T Consensus        39 ~L~i~~~~--d~G~Y~C~A~N~~G   60 (69)
T cd05739          39 VLELTNIY--ESANYTCVAISSLG   60 (69)
T ss_pred             EEEEeccc--cCeeEEEEEEeCCC
Confidence            68888874  79999999999999

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=97.90  E-value=1.9e-05  Score=49.00  Aligned_cols=25  Identities=24%  Similarity=0.563  Sum_probs=23.4

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +.|.+.+|+.+|+|.|+|.|+|.+.
T Consensus        60 G~L~fs~v~~~D~g~Y~C~A~n~~~   84 (96)
T cd05727          60 GNLYIAKVEASDRGNYSCFVSSPSS   84 (96)
T ss_pred             CcEEEeecCHhhCceeEEEEEeccc
Confidence            4899999999999999999999876

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=97.89  E-value=1.6e-05  Score=48.36  Aligned_cols=25  Identities=36%  Similarity=0.628  Sum_probs=23.4

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|+|..|
T Consensus        50 s~L~I~~~~~~DsG~Y~C~a~n~~~   74 (86)
T cd05862          50 STLTIENVTLSDLGRYTCTASSGQM   74 (86)
T ss_pred             eEEEEecCCcccCEEEEEEEeecce
Confidence            3799999999999999999999887

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.89  E-value=7.3e-05  Score=47.00  Aligned_cols=23  Identities=26%  Similarity=0.618  Sum_probs=20.9

Q ss_pred             CeeeEEEcccCCCCCEEEEEEEE
Q psy534           56 GMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        56 ~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+|.|.+++.+|+|.|.|.+.
T Consensus        67 ~~~~L~I~~~~~sDsgtY~Ca~~   89 (104)
T cd05720          67 NSFVLTLKNFQKENEGYYFCSVA   89 (104)
T ss_pred             CEEEEEECCCCHHHCEEEEEEEc
Confidence            46789999999999999999875

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=97.89  E-value=2.1e-05  Score=46.18  Aligned_cols=55  Identities=15%  Similarity=0.247  Sum_probs=42.3

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.++.+.|...+.|.+.+.|++++.. +.        -       ....|.|.++..+|+|.|.|.+.+
T Consensus        12 ~~g~~~~l~C~~~~~p~~~~~w~~~~~~-~~--------~-------~~~~~~~~~~~~~~~g~y~C~~~~   66 (80)
T PF13895_consen   12 EEGDSVTLTCSVSGNPPPQVQWYKNGSP-IN--------S-------SQNGLFIPNVSPEDSGNYTCRASN   66 (80)
T ss_dssp             ETTSEEEEEEEEESSSSSEEEEEETTEE-EE--------E-------ESSEEEESSEEGGGTEEEEEEEEE
T ss_pred             eCCCcEEEEEEEEcccceeeeeeeeeee-ee--------e-------eeeeeeeeeeccccCEEEEEEEEe
Confidence            4577889999999998899999997632 11        0       011277889999999999999975

...

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=97.88  E-value=3.4e-05  Score=47.54  Aligned_cols=25  Identities=28%  Similarity=0.553  Sum_probs=22.7

Q ss_pred             cEEEEcccC-CCCCeeeEEEEecCCC
Q psy534          105 TELRISNIR-SQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~-~~d~G~Y~C~a~n~~g  129 (145)
                      +.|.|.++. .+|+|.|+|.|+|.+|
T Consensus        57 g~L~I~~~~~~~D~G~Y~C~A~N~~G   82 (93)
T cd05849          57 GNLVINNPDKYKDAGRYVCIVSNIYG   82 (93)
T ss_pred             CEEEECcCCcCCCCEEEEEEEEeCcc
Confidence            489999885 6899999999999999

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=97.87  E-value=3.8e-05  Score=46.61  Aligned_cols=59  Identities=8%  Similarity=-0.018  Sum_probs=42.3

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+..+.+-|-.++. ...+.|++++.. +.  ...|+...       ...|.|.+++.+|+|.|.|.+.
T Consensus         9 ~~g~~v~L~C~~~s~-~A~v~W~~ng~~-l~--~~~r~~~~-------~~GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872           9 APGADVVLPCQLRSN-LASPVWLFNGTP-LN--AQFSYRVG-------TDGLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             ecCCCEEEECCCCCC-CccEEEEECCcc-cC--CCcceEEe-------CCCCEEEECCHhhCEEEEEEEe
Confidence            456677777777766 458999999864 22  22455432       4457899999999999999985

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=97.86  E-value=6.7e-05  Score=45.82  Aligned_cols=26  Identities=38%  Similarity=0.657  Sum_probs=22.7

Q ss_pred             cEEEEcccC-CCCCeeeEEEEecCCCC
Q psy534          105 TELRISNIR-SQDIGDYTCLATHVLYP  130 (145)
Q Consensus       105 ~~L~i~~v~-~~d~G~Y~C~a~n~~g~  130 (145)
                      ..|.|.++. .+|+|.|+|.|+|.+|.
T Consensus        58 ~~L~i~~~~~~~d~G~Y~C~a~N~~G~   84 (91)
T cd04967          58 GNLVISNPSKAKDAGRYQCLASNIVGT   84 (91)
T ss_pred             CEEEEecCCccCCCEEEEEEEEcCCCE
Confidence            378998887 48999999999999993

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=97.85  E-value=4.5e-05  Score=43.19  Aligned_cols=18  Identities=50%  Similarity=0.962  Sum_probs=17.4

Q ss_pred             EEEcccCCCCCeeeEEEE
Q psy534          107 LRISNIRSQDIGDYTCLA  124 (145)
Q Consensus       107 L~i~~v~~~d~G~Y~C~a  124 (145)
                      |.|.+++.+|+|.|+|.|
T Consensus        47 L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen   47 LTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             EEESSCTGGGTEEEEEEE
T ss_pred             EEEccCCHHHCEEEEEEC
Confidence            999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=97.83  E-value=6.1e-05  Score=46.35  Aligned_cols=24  Identities=33%  Similarity=0.523  Sum_probs=20.9

Q ss_pred             EEEEccc-----CCCCCeeeEEEEecC-CC
Q psy534          106 ELRISNI-----RSQDIGDYTCLATHV-LY  129 (145)
Q Consensus       106 ~L~i~~v-----~~~d~G~Y~C~a~n~-~g  129 (145)
                      .|.|.++     +++|+|.|+|.|.|. .|
T Consensus        55 ~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G   84 (95)
T cd05722          55 SLLITSVVHSKHNKPDEGFYQCVAQNDSLG   84 (95)
T ss_pred             eEEEeeeeccCCCCCcCEEEEEEEECCccC
Confidence            6777776     589999999999999 88

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.80  E-value=2.3e-05  Score=48.48  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=24.3

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +..|.|.++..+|+|.|+|.+.|..|
T Consensus        59 ~~~L~I~~~~~~DsG~Y~C~~~N~~g   84 (94)
T cd05756          59 KDLLWFLPAALEDSGLYTCVVRNSTY   84 (94)
T ss_pred             CCeEEEccCCcccCeEEEEEEcCCCc
Confidence            45899999999999999999999998

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=97.77  E-value=7e-05  Score=45.98  Aligned_cols=25  Identities=28%  Similarity=0.515  Sum_probs=22.0

Q ss_pred             cEEEEcccCCCCCeeeEEEEec-CCC
Q psy534          105 TELRISNIRSQDIGDYTCLATH-VLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n-~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.+ ..+
T Consensus        53 ~~L~I~~~~~~DsG~Y~C~a~~~~~~   78 (91)
T cd05871          53 RGLLLRSLQRSDAGVYTCTAVEHSFS   78 (91)
T ss_pred             CeEEEeeCChhHCEEEEEEEEccCCe
Confidence            4799999999999999999984 555

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=97.76  E-value=1.9e-05  Score=46.39  Aligned_cols=26  Identities=35%  Similarity=0.487  Sum_probs=23.6

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +.+|.|.+++.+|+|.|+|.|+|...
T Consensus        35 ~~~L~I~~v~~~D~G~YtC~a~~~~~   60 (72)
T cd07702          35 GYSLVIKDVTEEDAGIYTILLGIKQY   60 (72)
T ss_pred             CCEEEECcCCHHHCEEEEEEEEcccc
Confidence            45899999999999999999999865

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=97.73  E-value=4.6e-05  Score=46.02  Aligned_cols=25  Identities=24%  Similarity=0.448  Sum_probs=22.9

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..+
T Consensus        46 s~L~I~~~~~~DsG~Y~C~a~n~~~   70 (84)
T cd05861          46 STLTFPHATVEDSGTYECAAHESTQ   70 (84)
T ss_pred             EEEEECCCCcCCCEEEEEEEEECcc
Confidence            4799999999999999999999765

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd00098 IgC Immunoglobulin Constant domain

Probab=97.72  E-value=6.2e-05  Score=46.10  Aligned_cols=70  Identities=9%  Similarity=0.055  Sum_probs=42.1

Q ss_pred             hccceeeEEeecCC-Cc-cEEEEecCCCCcccccccceEEEecCCCCC-CeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFADDE-DI-PVYIWYDSYPTHEAEEYKGRISRVDKESPF-GMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~g~-p~-p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+.++.+.|++.|. |. ..++|++++.............. ..+... -...|.|......|.+.|.|++.+.
T Consensus        12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~-~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~   84 (95)
T cd00098          12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVP-NSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHE   84 (95)
T ss_pred             cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceecccccc-CCCCCEEEEEEEEECHHHhCCCCCEEEEEEeC
Confidence            57899999999987 64 57999998754222111011111 110000 1334556655566999999999764

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=97.71  E-value=0.00015  Score=42.95  Aligned_cols=26  Identities=23%  Similarity=0.211  Sum_probs=21.5

Q ss_pred             CcEEEEcccCC----CCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRS----QDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~----~d~G~Y~C~a~n~~g  129 (145)
                      +++|.|..+..    .|+|.|+|.|.|.+|
T Consensus        38 ~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G   67 (77)
T cd05874          38 TGTLVINIMNGEKAEAYEGVYQCTARNERG   67 (77)
T ss_pred             CceEEEeccccCCCCCCCEEEEEEEEcCCC
Confidence            34888887764    378999999999999

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=97.67  E-value=0.00011  Score=44.56  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=21.9

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|+|.|.+..+
T Consensus        52 ~L~I~~~~~~D~G~Y~C~a~~~~~   75 (89)
T cd04979          52 GLLIRSVSPADAGVYTCQSVEHGF   75 (89)
T ss_pred             CEEEccCCHHHCEEEEEEEecCcc
Confidence            699999999999999999998754

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=97.67  E-value=7.7e-05  Score=45.48  Aligned_cols=24  Identities=33%  Similarity=0.504  Sum_probs=22.0

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVL  128 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~  128 (145)
                      ..|.|.+++.+|+|.|+|.|.+..
T Consensus        48 ~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873          48 DGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             CcEEEeCCCHHHCEEEEEEEEecc
Confidence            379999999999999999999874

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.66  E-value=0.00019  Score=46.07  Aligned_cols=36  Identities=22%  Similarity=0.329  Sum_probs=25.0

Q ss_pred             ccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           42 YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        42 ~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      +.+|+....+ .......|.|.+++.+|+|.|+|.+.
T Consensus        61 ~~~rf~~~~~-~~~~~~~L~I~~~~~~Dsa~YyCa~~   96 (117)
T cd04981          61 VKGRFTITRD-TSKSTVYLQLNSLTPEDTAVYYCARG   96 (117)
T ss_pred             cCCcEEEEEE-ccCCEEEEEECCCCHHHCEEEEEEEE
Confidence            4456654211 11224579999999999999999875

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.65  E-value=0.00017  Score=45.58  Aligned_cols=27  Identities=30%  Similarity=0.466  Sum_probs=23.7

Q ss_pred             cCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          102 NDGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       102 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .++ +|.|.+++.+|+|.|+|.+.+...
T Consensus        68 ~ng-SL~I~~v~~~D~G~Y~~~v~~~~~   94 (105)
T cd05774          68 PNG-SLLIQNVTQKDTGFYTLQTITTNF   94 (105)
T ss_pred             CCC-cEEEecCCcccCEEEEEEEEeCCc
Confidence            344 999999999999999999998763

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=97.65  E-value=0.00019  Score=43.96  Aligned_cols=18  Identities=33%  Similarity=0.482  Sum_probs=16.6

Q ss_pred             cCCCCCeeeEEEEecCCC
Q psy534          112 IRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       112 v~~~d~G~Y~C~a~n~~g  129 (145)
                      ++.+|+|.|+|.|+|.+|
T Consensus        71 ~~~~D~G~Y~C~a~N~~G   88 (100)
T cd07693          71 KGRSDEGVYVCVAHNSLG   88 (100)
T ss_pred             CCcCcCEEEEEEEEcccc
Confidence            368999999999999999

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.64  E-value=9.4e-05  Score=43.80  Aligned_cols=25  Identities=32%  Similarity=0.527  Sum_probs=21.8

Q ss_pred             cEEEEcccCC----CCCeeeEEEEecCCC
Q psy534          105 TELRISNIRS----QDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~----~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.    +|+|.|+|.|.|.+|
T Consensus        39 g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G   67 (77)
T cd05733          39 GTLVIDNMNGGRAEDYEGEYQCYASNELG   67 (77)
T ss_pred             CEEEEeccCCCCCcCCCEEEEEEEEcCCC
Confidence            4888988754    789999999999999

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=97.62  E-value=0.00017  Score=44.74  Aligned_cols=26  Identities=31%  Similarity=0.401  Sum_probs=23.9

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +..|.|.++..+|+|.|+|+|.+..|
T Consensus        54 ~~~L~I~~v~~~D~G~YtC~~~~~~~   79 (95)
T cd05897          54 STYLHIIDVSLNDSGYYTCKLQFTHE   79 (95)
T ss_pred             CCEEEEEEcChhhCEEEEEEEEEeeC
Confidence            34799999999999999999999986

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.58  E-value=0.0003  Score=43.37  Aligned_cols=66  Identities=15%  Similarity=0.077  Sum_probs=43.5

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      +...+.++.+.|+... +.-.+.|||++... ...+.....     .......+.|.+++.+|+|.|+|....
T Consensus        11 vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~-~~~~~~~~~-----~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711          11 VVPSGENVTLQCHSDI-RFDRFILYKEGRSK-PVLHLYEKH-----HGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             ccCCCCeEEEEEecCC-CCCEEEEEECCCCC-Cceeccccc-----CCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            4557788999997764 34578999987531 111100000     012266789999999999999999753

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.57  E-value=0.00016  Score=44.84  Aligned_cols=24  Identities=33%  Similarity=0.533  Sum_probs=21.6

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVL  128 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~  128 (145)
                      ..|.|.+++.+|+|.|+|.+....
T Consensus        62 ~~L~I~nV~~~D~G~YtC~~~t~~   85 (95)
T cd05882          62 LIISISNVQLSDEGEYTCSIFTMP   85 (95)
T ss_pred             EEEEECCCCcccCEEEEEEEEeec
Confidence            489999999999999999998743

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.55  E-value=0.00042  Score=41.73  Aligned_cols=65  Identities=12%  Similarity=0.004  Sum_probs=39.5

Q ss_pred             eeeEEeecC-CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec
Q psy534           14 LSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN   81 (145)
Q Consensus        14 ~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   81 (145)
                      +.+.|++.| .|.+.|.||+++...... ... ... .........+|.|..-...|...|.|++.+..
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~-~~~-~~~-~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~   67 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGK-STV-EET-WSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA   67 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCc-ccc-eec-cCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence            457899985 699999999998542211 000 000 00001125667786666666779999998654

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=97.49  E-value=0.00029  Score=42.80  Aligned_cols=25  Identities=28%  Similarity=0.287  Sum_probs=23.0

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+|.|.+++.+|+|.|+|.+....|
T Consensus        57 ~sL~I~~l~~~DsG~Y~c~v~~~~~   81 (92)
T cd05741          57 GSLLIQNLTKEDSGTYTLQIISTNG   81 (92)
T ss_pred             ceEEEccCCchhcEEEEEEEEcCCC
Confidence            5899999999999999999998765

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.48  E-value=0.00019  Score=44.77  Aligned_cols=26  Identities=19%  Similarity=0.285  Sum_probs=23.2

Q ss_pred             CcEEEEcccCCCCCeeeEEEEec-CCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATH-VLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n-~~g  129 (145)
                      +.+|.|.+++.+|+|.|.|.+.+ +.|
T Consensus        62 daSi~i~nl~~~D~G~Y~C~v~t~P~g   88 (99)
T cd05886          62 DGTISLSRLELEDEGVYICEFATFPTG   88 (99)
T ss_pred             cceEEEcCCccccCEEEEEEEEeCCCC
Confidence            34899999999999999999999 555

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=97.47  E-value=0.00032  Score=41.67  Aligned_cols=24  Identities=25%  Similarity=0.517  Sum_probs=22.8

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|+|.|.|..|
T Consensus        52 ~l~i~~~~~~d~g~Y~C~~~n~~g   75 (85)
T cd05729          52 TLILESVVPSDSGKYTCIVENKYG   75 (85)
T ss_pred             EEEEeECCcccCEEEEEEEEECCc
Confidence            689999999999999999999998

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=97.45  E-value=0.00023  Score=44.10  Aligned_cols=24  Identities=33%  Similarity=0.457  Sum_probs=22.2

Q ss_pred             EEEEcccCCCC-CeeeEEEEecCCC
Q psy534          106 ELRISNIRSQD-IGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d-~G~Y~C~a~n~~g  129 (145)
                      .|.|.++..+| .|.|+|.|.|..|
T Consensus        65 ~L~I~~v~~~d~~G~Y~C~A~N~~G   89 (98)
T cd05758          65 TLTISNTQESDFQTSYNCTAWNSFG   89 (98)
T ss_pred             EEEECCccccccceeEEEEEEcCCC
Confidence            79999999855 8999999999999

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.45  E-value=0.00023  Score=44.13  Aligned_cols=25  Identities=32%  Similarity=0.442  Sum_probs=22.9

Q ss_pred             cEEEEcccCCCCCe-eeEEEEecCCC
Q psy534          105 TELRISNIRSQDIG-DYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G-~Y~C~a~n~~g  129 (145)
                      +.|.|.+++.+|+| .|.|.|+|...
T Consensus        58 GnL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          58 GNLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             ceEEEEEEehhhCCCCeEEEEEcccc
Confidence            49999999999999 79999999864

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=97.43  E-value=0.00051  Score=42.80  Aligned_cols=66  Identities=18%  Similarity=0.203  Sum_probs=39.0

Q ss_pred             ccCCCCCEEEEEEEEEecCCC--------CCCCCC--cEEEEEEe-EEecCCcEEEEcccCCCC-CeeeEEEEecCCC
Q psy534           64 KIRESDQGWYECKVVFLNRSP--------NSHKNG--TWFHLDVH-GVFNDGTELRISNIRSQD-IGDYTCLATHVLY  129 (145)
Q Consensus        64 ~v~~~D~G~Y~C~~~~~~~~~--------~~~~~g--~~~~l~c~-~~~~~~~~L~i~~v~~~d-~G~Y~C~a~n~~g  129 (145)
                      .+.+.|.+.-.|.+...-.+.        .....+  ..+.+.-. ......+.|.|.++.++| .|.|.|.|.|.+|
T Consensus        12 ~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G   89 (98)
T cd05898          12 YAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFG   89 (98)
T ss_pred             EEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCc
Confidence            456889999999983211000        011111  12222211 011123479999998877 7999999999999

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=97.41  E-value=8.9e-05  Score=45.88  Aligned_cols=25  Identities=24%  Similarity=0.335  Sum_probs=22.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.+.|..+
T Consensus        65 ~~L~I~~l~~sDsgtY~C~v~~~~~   89 (94)
T cd07690          65 FPLIIKNLKIEDSDTYICEVEDKKE   89 (94)
T ss_pred             EEEEECCCCHHHCEEEEEEECCccc
Confidence            3699999999999999999999865

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.40  E-value=0.00021  Score=44.54  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=22.7

Q ss_pred             CcEEEEcccCCCCCeeeEEEEec-CCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATH-VLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n-~~g  129 (145)
                      +.+|.|.+++.+|+|.|+|.+.+ +.|
T Consensus        63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g   89 (100)
T cd05888          63 DGALILRNAVQADEGKYKCRVITFPAG   89 (100)
T ss_pred             ceEEEEecCccccceEEEEEEEeCCCC
Confidence            34899999999999999999987 445

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=97.40  E-value=0.00065  Score=42.50  Aligned_cols=74  Identities=14%  Similarity=0.065  Sum_probs=47.0

Q ss_pred             HHhhhccceeeEEeecCCCccE-EEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            6 AVKSIFQMLSVGDFADDEDIPV-YIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         6 ~~~~~~~~~~~~~w~~g~p~p~-~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .....+-.+.+.+-....|.|. +.|.+.+....+ ............-....+.|.+.+++.+|+|.|+|.+.+.
T Consensus        13 ~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~-~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~   87 (101)
T cd05860          13 IFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTN-TSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNS   87 (101)
T ss_pred             EEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCc-cccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECC
Confidence            3445566667777777899997 999887643211 1111111110000113588999999999999999999754

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=97.40  E-value=0.00019  Score=44.53  Aligned_cols=25  Identities=40%  Similarity=0.655  Sum_probs=22.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+|.|.+++.+|+|.|+|.+.+..+
T Consensus        65 ~sL~I~~v~~~D~G~Y~C~v~~~~~   89 (100)
T cd05713          65 VALRIHNVRASDEGLYTCFFQSDGF   89 (100)
T ss_pred             EEEEEEcCChhhCEEEEEEEecCCc
Confidence            4799999999999999999998765

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=97.40  E-value=0.00093  Score=40.03  Aligned_cols=65  Identities=14%  Similarity=0.165  Sum_probs=36.5

Q ss_pred             eeeEEeecC-CCccEEEEecCCCCcccccccceEEEecCCCCC-CeeeEEEcccCCCCCEEEEEEEEEec
Q psy534           14 LSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPF-GMASLNLTKIRESDQGWYECKVVFLN   81 (145)
Q Consensus        14 ~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~   81 (145)
                      +.+.|++.| .|.+.+.||+++.......   ......+.... -...|.+......|.+.|.|++.+..
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~---~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~   68 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK---LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPA   68 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce---eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChh
Confidence            467899984 5999999999975422111   11111110000 02334554444555679999998654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=97.39  E-value=0.00021  Score=44.86  Aligned_cols=26  Identities=27%  Similarity=0.512  Sum_probs=23.6

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..+|.|.+++.+|+|.|.|.+.+..+
T Consensus        67 ~~sL~I~~v~~sD~G~Y~C~v~~~~~   92 (106)
T cd05714          67 DASLVITDLRLEDSGRYRCEVIDGIE   92 (106)
T ss_pred             cceEEECCCCHHHCEEEEEEEEcCCC
Confidence            35899999999999999999999866

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=97.37  E-value=0.00028  Score=41.84  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=21.3

Q ss_pred             CcEEEEcccC----CCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIR----SQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~----~~d~G~Y~C~a~n~~g  129 (145)
                      +.+|.|..+.    .+|+|.|+|.|+|.+|
T Consensus        38 ~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G   67 (77)
T cd05875          38 SGTLVIDFSGGGRPEDYEGEYQCFARNNLG   67 (77)
T ss_pred             CceEEEeccCCCCCCCCCEEEEEEEEeccc
Confidence            3489998764    2469999999999999

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=97.35  E-value=0.00036  Score=42.68  Aligned_cols=22  Identities=18%  Similarity=0.472  Sum_probs=20.5

Q ss_pred             EEEEcccCCCCCeeeEEEEecC
Q psy534          106 ELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .+.|.+++.+|+|.|+|...+.
T Consensus        54 ~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          54 KFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             EEEccCCChhHCEEEEEEEECC
Confidence            5899999999999999999986

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=97.32  E-value=0.00026  Score=44.40  Aligned_cols=26  Identities=31%  Similarity=0.542  Sum_probs=23.7

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..+|.|.+++.+|+|.|.|.+.++.+
T Consensus        67 ~~sL~I~~v~~~DsG~Y~C~v~~~~~   92 (106)
T cd05877          67 DASLVITDLRLEDYGRYRCEVIDGLE   92 (106)
T ss_pred             cEEEEEccCChHHCEEEEEEEEeccc
Confidence            34799999999999999999999887

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=97.31  E-value=0.00057  Score=41.00  Aligned_cols=24  Identities=13%  Similarity=0.353  Sum_probs=20.7

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +..|.|..+  .|+|.|.|.|+|.+|
T Consensus        48 ~s~L~i~~~--~d~g~Y~C~A~N~~G   71 (81)
T cd05749          48 PSVLNVPGL--NETSKFSCEAHNAKG   71 (81)
T ss_pred             CCEEEEccc--cCCeEEEEEEEeccC
Confidence            457899887  478999999999999

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.29  E-value=0.002  Score=38.85  Aligned_cols=66  Identities=11%  Similarity=0.101  Sum_probs=37.9

Q ss_pred             eeeEEeecC-CCccEEEEecCCCCcccccccceEEEecCCCC-CCeeeEEEcccCCCCCEEEEEEEEEec
Q psy534           14 LSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGRISRVDKESP-FGMASLNLTKIRESDQGWYECKVVFLN   81 (145)
Q Consensus        14 ~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~-~~~~sL~I~~v~~~D~G~Y~C~~~~~~   81 (145)
                      +.++|++.| .|...++|+|++....+...  .......+.. ..-.+|.|..-...|...|.|++.+..
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~--~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~   69 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKY--LKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES   69 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCcee--eEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence            568999995 68889999999864222111  0111011000 013445555444566779999997653

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=97.22  E-value=0.00079  Score=39.29  Aligned_cols=24  Identities=38%  Similarity=0.559  Sum_probs=21.1

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+.+.+++.+|+|.|+|.|.+..+
T Consensus        46 ~~~~~~~~~~~~g~y~C~~~~~~~   69 (80)
T PF13895_consen   46 GLFIPNVSPEDSGNYTCRASNGSG   69 (80)
T ss_dssp             EEEESSEEGGGTEEEEEEEEETTE
T ss_pred             eeeeeeeccccCEEEEEEEEeCCC
Confidence            377889999999999999999765

...

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=97.17  E-value=0.00064  Score=43.41  Aligned_cols=27  Identities=33%  Similarity=0.623  Sum_probs=24.1

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ...+|.|.+++.+|+|.|+|.+.+++.
T Consensus        72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~   98 (112)
T cd05900          72 SDATLEITELRSNDSGTYRCEVMHGIE   98 (112)
T ss_pred             CCcEEEEeecccccCEEEEEEEecCCC
Confidence            345899999999999999999998876

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.14  E-value=0.00046  Score=42.64  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=22.1

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+|.|.+++.+|+|.|+|.+.+..+
T Consensus        62 ~sL~I~~v~~~DsG~Y~C~~~t~~~   86 (95)
T cd07701          62 LSISISDVSLSDEGQYTCSLFTMPV   86 (95)
T ss_pred             EEEEECcCCcccCEEEEEEeEeecC
Confidence            4799999999999999999998543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=97.10  E-value=0.00037  Score=40.08  Aligned_cols=23  Identities=43%  Similarity=0.821  Sum_probs=20.9

Q ss_pred             CcEEEEcccCCCCCeeeEEEEec
Q psy534          104 GTELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ...|.|.++..+|.|.|+|.|+|
T Consensus        53 ~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   53 NSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEESSCCGGGTEEEEEEEEE
T ss_pred             eeEEEEccCCHHhCcEEEEEEEC
Confidence            34899999999999999999987

...

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.10  E-value=0.0012  Score=40.82  Aligned_cols=24  Identities=29%  Similarity=0.533  Sum_probs=21.2

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..+|.|.+++.+|+|.|.|.....
T Consensus        60 ~~sL~I~nv~~~D~G~Y~C~~~~~   83 (97)
T cd05846          60 STSITIWNVTLEDEGCYKCIFNTF   83 (97)
T ss_pred             ccEEEEeCCceeeeEEEEEEEEeC
Confidence            458999999999999999998754

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.09  E-value=0.003  Score=37.09  Aligned_cols=67  Identities=7%  Similarity=0.033  Sum_probs=38.0

Q ss_pred             ceeeEEeecCC-Cc-cEEEEecCCCCcccccccceEEEecCCCCCC-eeeEEEcccCCCCCEEEEEEEEEe
Q psy534           13 MLSVGDFADDE-DI-PVYIWYDSYPTHEAEEYKGRISRVDKESPFG-MASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        13 ~~~~~~w~~g~-p~-p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ++.+.|.+.|. |. ..+.|+|++... ......-..+...+.... -..|.|......+...|.|++.+.
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~-~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEV-TSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEEC-CCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence            46789999975 65 579999987532 222211111111111111 344555554556778999999754

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=97.08  E-value=0.00063  Score=41.76  Aligned_cols=25  Identities=32%  Similarity=0.472  Sum_probs=22.2

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.+.+...
T Consensus        62 ~~L~I~~v~~~DsG~Y~C~~~~~~~   86 (95)
T cd05717          62 LSISISNVSLSDEGRYTCSLYTMPV   86 (95)
T ss_pred             eEEEEccCCcccCEEEEEEEecCCC
Confidence            4799999999999999999998654

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.07  E-value=0.0041  Score=37.38  Aligned_cols=64  Identities=14%  Similarity=0.146  Sum_probs=37.9

Q ss_pred             eeeEEeecC-CCccEEEEecCCCCcccccccceEEEecC-CC-CC-CeeeEEEcccCCCCCEEEEEEEEEec
Q psy534           14 LSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGRISRVDK-ES-PF-GMASLNLTKIRESDQGWYECKVVFLN   81 (145)
Q Consensus        14 ~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~-~~-~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~   81 (145)
                      ..+.|.+.| .|.+.++|++++... .....   ....+ +. .. -...|.|......|...|.|++.+..
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l-~~~~~---~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~   69 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQEL-EGAPT---SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHES   69 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEEC-CCcce---eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcc
Confidence            357899985 598999999998542 21111   11111 00 00 02445555555667789999998643

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=97.03  E-value=0.00068  Score=43.55  Aligned_cols=26  Identities=23%  Similarity=0.339  Sum_probs=23.3

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +.+|.|.+++.+|.|.|+|.+.|+-+
T Consensus        79 daSI~I~nv~~sD~G~Y~C~v~n~p~  104 (116)
T cd05879          79 DGSIVIHNLDYTDNGTFTCDVKNPPD  104 (116)
T ss_pred             eeEEEEccCCcccCEEEEEEEEcCCC
Confidence            34899999999999999999999865

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=97.01  E-value=0.002  Score=40.46  Aligned_cols=65  Identities=12%  Similarity=0.154  Sum_probs=40.9

Q ss_pred             hccceeeEEeec---CCCcc--EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           10 IFQMLSVGDFAD---DEDIP--VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        10 ~~~~~~~~~w~~---g~p~p--~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      +-+-+.-+.|..   ..+..  +++|..+........+..|+.+.     .++.+|.|..++++|+|.|.-++.+
T Consensus        23 ~Qtk~~sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~-----~enlaLlIkaAq~qDSG~Y~LEvT~   92 (108)
T PF11465_consen   23 IQTKVYSVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFT-----SENLALLIKAAQPQDSGLYCLEVTN   92 (108)
T ss_dssp             ---SSEEEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEE-----TTTTEEEESS-SGGG-EEEEEEEEE
T ss_pred             ccceeEEEEEEEEcccCCceEEEEEEcCCCcccccccccceEeee-----ccCceEEEeecCcccCceEEEEEEc
Confidence            334455678876   44444  35564443222223367888875     4599999999999999999999874

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.00  E-value=0.00093  Score=41.05  Aligned_cols=26  Identities=31%  Similarity=0.483  Sum_probs=22.3

Q ss_pred             CcEEEEcccCCCCCeeeEEEEec-CCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATH-VLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n-~~g  129 (145)
                      ..+|.|.+++.+|+|.|.|.+.. +.|
T Consensus        61 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g   87 (98)
T cd05718          61 DATISISNLRLEDEGNYICEFATFPQG   87 (98)
T ss_pred             ceEEEEccCCcccCEEEEEEEEeCCCC
Confidence            34899999999999999999875 455

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=96.96  E-value=0.0011  Score=42.05  Aligned_cols=25  Identities=40%  Similarity=0.624  Sum_probs=22.3

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+|.|.+++.+|+|.|.|.+.....
T Consensus        72 asL~I~~l~~sD~G~Y~C~v~~~~~   96 (110)
T cd05878          72 ASLEISRLRSSDSGVYRCEVMHGIE   96 (110)
T ss_pred             EEEEECCCChhhCEEEEEEEEeCCC
Confidence            4799999999999999999988654

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=96.90  E-value=0.0016  Score=41.94  Aligned_cols=26  Identities=31%  Similarity=0.558  Sum_probs=23.7

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +.+|.|.+++.+|+|.|.|.+.++..
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~  103 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIE  103 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCc
Confidence            35899999999999999999998876

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=96.89  E-value=0.00094  Score=42.72  Aligned_cols=26  Identities=23%  Similarity=0.396  Sum_probs=22.9

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..+|.|.+++.+|+|.|+|.+.|.-.
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          78 DASILIWQLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             ceEEEEeeCChhhCEEEEEEEEeCCC
Confidence            34799999999999999999998654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=96.86  E-value=0.0011  Score=42.26  Aligned_cols=26  Identities=27%  Similarity=0.468  Sum_probs=23.1

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..+|.|.+++.+|+|.|.|.+..+..
T Consensus        71 ~asL~i~nv~~~D~G~Y~C~v~~g~~   96 (110)
T cd05902          71 NASLVLSRLRYSDSGTYRCEVVLGIN   96 (110)
T ss_pred             eEEEEECCCCHHHCEEEEEEEEECCc
Confidence            34899999999999999999998764

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=96.85  E-value=0.0012  Score=40.82  Aligned_cols=25  Identities=28%  Similarity=0.356  Sum_probs=23.1

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+|.|.+++.+|+|.|.|.+.+..|
T Consensus        61 ~sL~I~~~~~~DsG~Y~c~v~~~~~   85 (97)
T cd05775          61 YSLQISNLKMEDAGSYRAEINTKNG   85 (97)
T ss_pred             eeEEECCCchHHCEEEEEEEEcCCC
Confidence            4899999999999999999998876

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.81  E-value=0.0087  Score=38.28  Aligned_cols=39  Identities=15%  Similarity=0.248  Sum_probs=28.6

Q ss_pred             ccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec
Q psy534           42 YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN   81 (145)
Q Consensus        42 ~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   81 (145)
                      .++|+.. ..+......+|.|.+++.+|++.|.|......
T Consensus        59 ~~~r~tc-s~~~s~ntv~L~l~~L~a~DTa~Y~Ca~e~my   97 (115)
T cd05721          59 SLDGFNC-DGTLGNEQVNFTLQNLRANQTDIYFCKIELMY   97 (115)
T ss_pred             cCCCeEE-eEeCCCCEEEEEEcCCCHHHCeEEEEEeeecc
Confidence            4566643 22344557889999999999999999875443

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=96.76  E-value=0.0015  Score=41.64  Aligned_cols=25  Identities=28%  Similarity=0.421  Sum_probs=22.3

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+|.|.+++.+|+|.|.|.+.|.-.
T Consensus        80 ~sL~I~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          80 ASIVIHNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eEEEEeeCCcccCEEEEEEEEeCCC
Confidence            4799999999999999999998643

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>KOG3515|consensus

Probab=96.72  E-value=0.0061  Score=50.35  Aligned_cols=109  Identities=16%  Similarity=0.171  Sum_probs=74.4

Q ss_pred             hhccceeeEEeecC-CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-----
Q psy534            9 SIFQMLSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-----   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-----   82 (145)
                      ..+..|.+-|.+++ .|.+.+.||+.+....     +|-..      ..+..|...++.+..-+.|.|++.+...     
T Consensus        20 ~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-----~~~~~------~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~   88 (741)
T KOG3515|consen   20 RLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-----GRYAT------IADPTLVTTGDVRDTVAELNCRAFNSVGMPSRC   88 (741)
T ss_pred             ccCCcceeeeecCCCCCCcceEEEecCcccc-----ccccc------ccCCceeeecchhhhhhhhhhhhcccccCceec
Confidence            45778899999995 4677899999875421     33322      2377788888888889999999965421     


Q ss_pred             --------CC--------CCCCCCcEEEEEEe------------------------------------EEecCCcEEEEc
Q psy534           83 --------SP--------NSHKNGTWFHLDVH------------------------------------GVFNDGTELRIS  110 (145)
Q Consensus        83 --------~~--------~~~~~g~~~~l~c~------------------------------------~~~~~~~~L~i~  110 (145)
                              ++        .....+..+.+.|.                                    +.......+.+.
T Consensus        89 ~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~  168 (741)
T KOG3515|consen   89 PMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQT  168 (741)
T ss_pred             ceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeE
Confidence                    00        01233667777774                                    000223457788


Q ss_pred             ccCCCCCeeeEEEEecCC
Q psy534          111 NIRSQDIGDYTCLATHVL  128 (145)
Q Consensus       111 ~v~~~d~G~Y~C~a~n~~  128 (145)
                      ..+.++.|.|+|.|.|..
T Consensus       169 v~Rka~~g~~tC~A~nr~  186 (741)
T KOG3515|consen  169 VSRKADNGNYTCPANNRN  186 (741)
T ss_pred             EEEecCCceeEccccccc
Confidence            888999999999999963

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=96.69  E-value=0.0021  Score=39.91  Aligned_cols=26  Identities=31%  Similarity=0.479  Sum_probs=22.3

Q ss_pred             CcEEEEcccCCCCCeeeEEEEec-CCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATH-VLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n-~~g  129 (145)
                      +.+|.|.+++.+|+|.|+|.+.+ +.|
T Consensus        59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G   85 (96)
T cd05887          59 DATIMLENVGFSDIGVYICKAVTFPLG   85 (96)
T ss_pred             ccEEEEeCCCccccEEEEEEEEeCCCC
Confidence            45999999999999999999755 456

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=96.65  E-value=0.0023  Score=39.69  Aligned_cols=26  Identities=23%  Similarity=0.373  Sum_probs=22.4

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecC-CC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHV-LY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~-~g  129 (145)
                      +.+|.|.+|+.+|+|.|+|.+... .|
T Consensus        59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g   85 (96)
T cd05889          59 DMSLSFNNATEEDVGLYCCSLVTYPQG   85 (96)
T ss_pred             ccEEEEcCCCcccCEEEEEEEEeCCCC
Confidence            348999999999999999998764 55

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=96.61  E-value=0.0025  Score=40.03  Aligned_cols=28  Identities=25%  Similarity=0.461  Sum_probs=24.6

Q ss_pred             cCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          102 NDGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       102 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..+..|.|.++..+|+|.|+|++.|.-.
T Consensus        67 ~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~   94 (104)
T cd05896          67 KEEDSIWFRPAELQDSGLYTCVLRNSTY   94 (104)
T ss_pred             EeCCEEEEEeCChhhCeEEEEEECCCCc
Confidence            3455899999999999999999999865

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>smart00409 IG Immunoglobulin

Probab=96.61  E-value=0.0035  Score=36.36  Aligned_cols=25  Identities=44%  Similarity=0.658  Sum_probs=23.0

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.+.+..+
T Consensus        51 ~~l~i~~~~~~d~G~Y~C~v~~~~~   75 (86)
T smart00409       51 STLTISNVTPEDSGTYTCAATNSSG   75 (86)
T ss_pred             eEEEEEeeccccCeEEEEEEEcCCC
Confidence            4799999999999999999998876

>smart00410 IG_like Immunoglobulin like

Probab=96.61  E-value=0.0035  Score=36.36  Aligned_cols=25  Identities=44%  Similarity=0.658  Sum_probs=23.0

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.+.+..+
T Consensus        51 ~~l~i~~~~~~d~G~Y~C~v~~~~~   75 (86)
T smart00410       51 STLTISNVTPEDSGTYTCAATNSSG   75 (86)
T ss_pred             eEEEEEeeccccCeEEEEEEEcCCC
Confidence            4799999999999999999998876

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=96.60  E-value=0.0015  Score=40.55  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=23.0

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..+|.|.+++.+|+|.|.|.+.+..+
T Consensus        66 ~~sL~I~~v~~~D~G~Y~C~v~~~~~   91 (105)
T cd00099          66 SFTLTISSLQPEDSAVYYCAVSLSGG   91 (105)
T ss_pred             EEEEEECCCCHHHCEEEEEEEecCCC
Confidence            34799999999999999999998765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=96.53  E-value=0.005  Score=38.48  Aligned_cols=26  Identities=23%  Similarity=0.247  Sum_probs=22.5

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ...|.|.+++.+|+|.|.|.+.+..+
T Consensus        69 ~~~L~I~~~~~~DsG~Y~C~~~~~~~   94 (109)
T cd04983          69 SSSLHISAAQLSDSAVYFCALSESGG   94 (109)
T ss_pred             EEEEEECCCCHHHCEEEEEEEecCCC
Confidence            34799999999999999999997643

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.51  E-value=0.016  Score=36.26  Aligned_cols=68  Identities=10%  Similarity=0.095  Sum_probs=41.1

Q ss_pred             hhccceeeEEeec-CCCccE--EEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCE-EEEEEEEEec
Q psy534            9 SIFQMLSVGDFAD-DEDIPV--YIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQG-WYECKVVFLN   81 (145)
Q Consensus         9 ~~~~~~~~~~w~~-g~p~p~--~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G-~Y~C~~~~~~   81 (145)
                      ..+..+.+.|.+. +.|.+.  +.||+++.......+.+    ..........+|.+. +.++|-| .|.|+|.+..
T Consensus        14 ~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~----~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l   85 (100)
T cd05755          14 PVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGD----NTKSPVNAPATITIT-VDREDHGANFSCETELDL   85 (100)
T ss_pred             cCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecc----ccCCCceeEEEEEEe-cchhhCCcEEEEEEEecc
Confidence            4567889999998 468776  69999985432211111    000011224556665 4455555 9999997543

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=96.50  E-value=0.014  Score=35.93  Aligned_cols=67  Identities=10%  Similarity=0.015  Sum_probs=38.6

Q ss_pred             hhhccceeeEEeecCC-Ccc-EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEc---ccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDE-DIP-VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLT---KIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~-p~p-~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~---~v~~~D~G~Y~C~~~~~   80 (145)
                      ..++.+..++|.+.|. |.. .++|++++...........  ...    .++++..+.   .+..++...|.|++.+.
T Consensus        11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~--~~~----~~dgTy~~~s~L~~~~~~~~~ysC~V~H~   82 (94)
T cd05766          11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTE--LIP----NGDWTYQILVMLETTPSRGDTYTCVVEHS   82 (94)
T ss_pred             ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecc--eEE----CCCCcEEEEEEEEEcCCCCCEEEEEEEeC
Confidence            3456788999999984 655 7899999854222101111  111    223332221   33455677999999764

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PHA02633 hypothetical protein; Provisional

Probab=96.50  E-value=0.0053  Score=34.71  Aligned_cols=36  Identities=28%  Similarity=0.435  Sum_probs=27.8

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCC-----CcEEEEeCe
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLY-----PDLLVVLGS  138 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g-----~~~~v~~~~  138 (145)
                      ++..|-|-+...+|+|.|.|...|.--     .++.|..+.
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~   56 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI   56 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence            455789999999999999999998743     555555544

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=96.45  E-value=0.012  Score=36.23  Aligned_cols=65  Identities=6%  Similarity=-0.154  Sum_probs=39.9

Q ss_pred             hhccceeeEEeecCC-C-ccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEc---ccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDE-D-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLT---KIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~-p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~---~v~~~D~G~Y~C~~~~~   80 (145)
                      +.+.+..++|.+.|- | ...+.|.+++....  +..... .+.    .++++.++.   .+..++...|.|++.+.
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~--~~~~~~-~~p----~~d~tyq~~s~l~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP--KVEQSD-LSF----SKDWTFYLLKSTEFTPTKGDEYACRVRHN   82 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC--CcEECc-EEE----CCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence            445566899999984 5 44689999985422  221111 111    234454442   34677888999999763

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=96.44  E-value=0.029  Score=36.81  Aligned_cols=70  Identities=13%  Similarity=0.190  Sum_probs=38.3

Q ss_pred             hccceeeEEeecCC-Cc-cEEEEecCCCCccc-----cccc-ceEEEecCCCCCC-eeeEEEcccCCCCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFADDE-DI-PVYIWYDSYPTHEA-----EEYK-GRISRVDKESPFG-MASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~g~-p~-p~~~w~k~~~~~~~-----~~~~-~R~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+..+.+.|.+.|. |. +.+.|++++.....     .... ..... ..+.... ...|.|..-...+.+.|.|++.+.
T Consensus        52 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~-~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~  130 (139)
T cd05771          52 IEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQ-HQDGTYSLSSHLTLEPGTEDAGATYTCRVSHV  130 (139)
T ss_pred             cCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEe-CCCCCEEEEEEEEecCCccCCCCEEEEEEEcC
Confidence            35667899999985 65 48999998742111     0100 00110 1111111 345566544445567999999754

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.36  E-value=0.016  Score=35.86  Aligned_cols=60  Identities=13%  Similarity=0.149  Sum_probs=36.7

Q ss_pred             ceeeEEeec-CCCccEEEEecCCCCcc----cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           13 MLSVGDFAD-DEDIPVYIWYDSYPTHE----AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        13 ~~~~~~w~~-g~p~p~~~w~k~~~~~~----~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      -....|++. |.|.+.|+|+++.....    .....+++..        ...|.+..-...|...|.|++.+.
T Consensus        17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv--------~S~l~~~P~~~d~Gk~ltC~v~h~   81 (95)
T cd07703          17 VPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTV--------TSEYSLVPTPEANGKEVTCKVEHE   81 (95)
T ss_pred             cEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEE--------EEEEEEecCHHHCCCEEEEEEeCc
Confidence            345678887 78999999998832100    0111122222        445666655566666899999854

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=96.36  E-value=0.004  Score=38.55  Aligned_cols=23  Identities=26%  Similarity=0.392  Sum_probs=20.7

Q ss_pred             EEEEcccCCCCCeeeEEEEecCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVL  128 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~  128 (145)
                      +|.|.+++.+|+|.|+|.+....
T Consensus        63 tL~I~~vq~~D~G~Y~Cqv~t~p   85 (95)
T cd05881          63 RVSLSNVSLSDEGRYFCQLYTDP   85 (95)
T ss_pred             EEEECcCCcccCEEEEEEEEccc
Confidence            69999999999999999998654

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>PHA02633 hypothetical protein; Provisional

Probab=96.36  E-value=0.0037  Score=35.32  Aligned_cols=24  Identities=21%  Similarity=0.326  Sum_probs=21.3

Q ss_pred             CeeeEEEcccCCCCCEEEEEEEEE
Q psy534           56 GMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        56 ~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ....|.|.++..+|+|.|.|.+.+
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn   39 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKN   39 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcC
Confidence            367799999999999999999963

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=96.32  E-value=0.012  Score=35.63  Aligned_cols=23  Identities=22%  Similarity=0.271  Sum_probs=20.0

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|..++.+|+|.|.|.+. +.|
T Consensus        48 GLlI~~~~~~dsG~Y~C~s~-E~g   70 (85)
T cd05872          48 GLLILVTSPEHSGTYRCYSE-EEG   70 (85)
T ss_pred             CCEEEECCHhhCEEEEEEEe-cCC
Confidence            47899999999999999987 556

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.32  E-value=0.012  Score=36.00  Aligned_cols=64  Identities=16%  Similarity=0.172  Sum_probs=37.4

Q ss_pred             ccceeeEEeecCC-Ccc-EEEEecCCCCcccccccceEEEecCCCCCCeeeEE---EcccCCCCCEEEEEEEEEe
Q psy534           11 FQMLSVGDFADDE-DIP-VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLN---LTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        11 ~~~~~~~~w~~g~-p~p-~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~---I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++|.+.|. |.. .+.|++++..............      .++++..   ...+..+|.+.|.|++.+.
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~------~~d~ty~~~s~l~v~~~~~~~ytC~V~H~   82 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILP------NGDGTYQLWVTLEVPPEDKARYSCRVEHS   82 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEE------CCCCeEEEEEEEEECCCCCCEEEEEEEeC
Confidence            4567999999985 654 7899999742111111112211      1222222   2244556889999999764

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=96.22  E-value=0.024  Score=34.46  Aligned_cols=25  Identities=20%  Similarity=0.516  Sum_probs=21.7

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .+.+|.+.++...|+|.++|.+...
T Consensus        49 ~~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694          49 DKKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             CccEEEeceeCcccCCEEEEEEEEC
Confidence            4568999999999999999999654

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=96.20  E-value=0.031  Score=34.00  Aligned_cols=56  Identities=16%  Similarity=0.178  Sum_probs=39.4

Q ss_pred             ccceeeEEeecCC--CccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           11 FQMLSVGDFADDE--DIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        11 ~~~~~~~~w~~g~--p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      +..+.+.|-....  |.+.+.|+.-+....        ..    ...+..+|.+..+...|+|.+.|.+.
T Consensus        14 G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~--------~~----~~~~~ktL~~~qv~~qdSG~WtC~V~   71 (88)
T cd07694          14 GTNLTLTLHGSSNSLPAFKVEWRGPGNKSK--------QI----LNQDKKTLNLVQLGPNDSGTWDCIVS   71 (88)
T ss_pred             CCcEEEEEecCCCCCCCccEEEeCCCCccc--------ee----ccCCccEEEeceeCcccCCEEEEEEE
Confidence            4566777877643  455899976654311        11    11358889999999999999999996

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=96.20  E-value=0.0073  Score=38.02  Aligned_cols=25  Identities=20%  Similarity=0.288  Sum_probs=22.1

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVL  128 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~  128 (145)
                      ...|.|.+++.+|+|.|+|.+.+..
T Consensus        71 ~~~L~I~~~~~~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          71 RSSLTIKSAEPEDSAVYLCASSLGG   95 (110)
T ss_pred             ccEEEECCCChhhCEEEEEEeeCCC
Confidence            3479999999999999999998764

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=96.20  E-value=0.0082  Score=38.47  Aligned_cols=33  Identities=18%  Similarity=0.113  Sum_probs=25.1

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCCCcEEEEeC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLYPDLLVVLG  137 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~v~~~  137 (145)
                      .+|.|.+++.+|+|.|.|.+...-+..+....|
T Consensus        80 ~sL~I~~l~~~Dsg~Y~C~~~~~~~~~~~f~~g  112 (119)
T cd05712          80 CSLLISDAQPEDSGKYFFRVELGDSNKYNFLKN  112 (119)
T ss_pred             EEEEEccCChhhCeEEEEEEEcCCccEEEecCC
Confidence            479999999999999999987654444444433

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.20  E-value=0.02  Score=35.31  Aligned_cols=66  Identities=12%  Similarity=0.038  Sum_probs=36.8

Q ss_pred             hhccceeeEEeecCC-Cc-cEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEc---ccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDE-DI-PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLT---KIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~-p~-p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~---~v~~~D~G~Y~C~~~~~   80 (145)
                      +...+..++|++.|- |. ..+.|.+++...........+  ..    .++++.++.   .+..++...|.|++.+.
T Consensus        13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~--~~----~~Dgty~~~s~L~v~~~~~~~ytC~V~H~   83 (94)
T cd05767          13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRY--YP----RQDLSFQKFSYLNFTPEEGDIYSCIVEHW   83 (94)
T ss_pred             cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeee--Ee----CCCCcEEEEEEEEEECCCCCeEEEEEEeC
Confidence            344557899999984 54 568999988542211111111  11    223332221   33455677999999753

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.05  E-value=0.0046  Score=38.42  Aligned_cols=23  Identities=30%  Similarity=0.579  Sum_probs=21.3

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .+|.|.+++.+|+|.|.|.+...
T Consensus        79 ~sL~i~~l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   79 FSLTIKNLQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             EEEEESSESGGGEEEEEEEEEES
T ss_pred             EEEEECCCCcCcCEEEEEEEEEC
Confidence            47999999999999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.03  E-value=0.023  Score=35.32  Aligned_cols=66  Identities=11%  Similarity=0.014  Sum_probs=41.8

Q ss_pred             Hhhhccceee-EEeec-CCCccEEEEecCCCCcc----cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            7 VKSIFQMLSV-GDFAD-DEDIPVYIWYDSYPTHE----AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         7 ~~~~~~~~~~-~~w~~-g~p~p~~~w~k~~~~~~----~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.+.++.+ .|++. |.|++.|.|+.+..-..    .....+.+..        ...+.+..-+..|.-.+.|++.+.
T Consensus        12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV--------~S~~~l~p~r~d~G~~vtC~V~H~   83 (97)
T cd07704          12 LIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTV--------TSEYIWVPSRHANGHPLTCVVSHP   83 (97)
T ss_pred             EeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEE--------EEEEEEEeCHHHCCcEEEEEEeCc
Confidence            3455666677 89887 88999999998732111    1111223332        455666666666777999999754

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=95.91  E-value=0.012  Score=36.88  Aligned_cols=25  Identities=24%  Similarity=0.456  Sum_probs=23.2

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|..++.+|+|.|+|.|+|+..
T Consensus        65 S~L~L~Rlk~~E~G~YTf~a~N~~~   89 (101)
T cd05860          65 SELHLTRLKGTEGGTYTFLVSNSDA   89 (101)
T ss_pred             EEEEEeecChhhCcEEEEEEECCCC
Confidence            3799999999999999999999976

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.90  E-value=0.013  Score=42.56  Aligned_cols=50  Identities=18%  Similarity=0.326  Sum_probs=36.6

Q ss_pred             CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           23 EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        23 ~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      -..|.+.|...++..+..  .+++.+      -..++|.+.+.+.+++|.|+|.....
T Consensus        10 ~iDP~y~W~GP~g~~l~g--n~~~nI------T~TG~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   10 LIDPTYLWTGPNGKPLSG--NSYVNI------TETGKLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             cCCCceEEECCCCcccCC--CCeEEE------ccCceEEeeccccccCCceEEEEEEE
Confidence            357899998776543332  235555      23788999999999999999998543

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=95.88  E-value=0.039  Score=34.06  Aligned_cols=61  Identities=13%  Similarity=0.171  Sum_probs=35.8

Q ss_pred             cceeeEEeec-CCCccEEEEecCCCCccc----ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           12 QMLSVGDFAD-DEDIPVYIWYDSYPTHEA----EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        12 ~~~~~~~w~~-g~p~p~~~w~k~~~~~~~----~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .-....|.+. |.|.+.|+|+++......    ....+.+..        ...|.+..-...|.-.|.|++.+.
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv--------~S~l~~~p~~~d~G~~~tC~v~h~   81 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTV--------TSEYRLVPSREANGKELTCVVSHP   81 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEE--------EEEEEEecCHHHCCCEEEEEEeCc
Confidence            3445668886 889999999997211000    001111211        345666555555666899999754

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=95.83  E-value=0.0084  Score=36.91  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=20.5

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+.+.
T Consensus        63 ~~L~I~~~~~~Dsg~Y~C~~~~~   85 (98)
T cd04984          63 ASLTISGAQTEDEADYYCQVWDS   85 (98)
T ss_pred             EEEEECCCChhhCEEEEEEEccC
Confidence            46999999999999999998754

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>smart00406 IGv Immunoglobulin V-Type

Probab=95.79  E-value=0.0043  Score=36.26  Aligned_cols=20  Identities=45%  Similarity=0.820  Sum_probs=17.9

Q ss_pred             cEEEEcccCCCCCeeeEEEE
Q psy534          105 TELRISNIRSQDIGDYTCLA  124 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a  124 (145)
                      .+|.|.+++.+|+|.|.|.+
T Consensus        62 ~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       62 VSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             EEEEEcCCCHHHCEEEEEcC
Confidence            47999999999999999963

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=95.73  E-value=0.0066  Score=37.96  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=20.4

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+.+.
T Consensus        71 ~~L~I~~~~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          71 FTLTISRVEPEDAAVYYCQQYGT   93 (106)
T ss_pred             EEEEECCCChHHCEEEEEEEeCC
Confidence            36999999999999999998764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=95.65  E-value=0.026  Score=34.64  Aligned_cols=20  Identities=15%  Similarity=0.567  Sum_probs=17.8

Q ss_pred             EEEEcccCCCCCeeeEEEEe
Q psy534          106 ELRISNIRSQDIGDYTCLAT  125 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~  125 (145)
                      .+.|..++.+|+|.|.|...
T Consensus        56 ~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          56 SFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             EEEecCCCcccCEEEEEEEE
Confidence            46899999999999999964

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=95.60  E-value=0.0071  Score=37.17  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=21.3

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVL  128 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~  128 (145)
                      ..|.|.+++.+|+|.|.|.+....
T Consensus        64 ~~L~I~~v~~~DsG~Y~C~~~~~~   87 (98)
T cd05716          64 FTVTLNQLRKEDAGWYWCGVGDDG   87 (98)
T ss_pred             EEEEEcCCCHHHCEEEEEEcccCC
Confidence            379999999999999999988754

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=95.40  E-value=0.015  Score=34.75  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=22.0

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +|.+......|.+.|+|+|.|+++
T Consensus        44 ~L~~~~~~~Ddg~~~~C~A~n~a~   67 (80)
T cd05885          44 TIRFPVDRKDDGAILSCEASHPAL   67 (80)
T ss_pred             EEEEEeeeccCCcEEEEEEEChhh
Confidence            689988889999999999999987

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=95.38  E-value=0.077  Score=31.81  Aligned_cols=68  Identities=18%  Similarity=0.155  Sum_probs=38.2

Q ss_pred             ccceeeEEeec-CCCccEEEEecCCCCcccccccceEEEecCCCCC-CeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           11 FQMLSVGDFAD-DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPF-GMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        11 ~~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +..+.+.|-+. |.|.|.++|+.++.......  ........+... -...|.+..-...+...+.|++.+.
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~   83 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASN--TTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHP   83 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEE--EEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEET
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeee--eeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECC
Confidence            45778889766 78999999999986431111  111111111111 1345666544455667889999764

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=95.22  E-value=0.014  Score=36.97  Aligned_cols=23  Identities=26%  Similarity=0.458  Sum_probs=20.5

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|+|.+++.+|+|.|.|.+...
T Consensus        77 ~~L~I~~~~~~Dsg~Y~C~~~~~   99 (116)
T cd04982          77 STLTIQNLEKEDSATYYCAYWES   99 (116)
T ss_pred             EEEEEEECCHHHCEEEEEEEecC
Confidence            47999999999999999998753

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PHA03376 BARF1; Provisional

Probab=95.12  E-value=0.03  Score=38.99  Aligned_cols=25  Identities=16%  Similarity=0.119  Sum_probs=22.2

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      -+|.|.+++.+|.|.|+|..+-...
T Consensus        87 vsLvI~~l~lSDdGtY~C~fQkge~  111 (221)
T PHA03376         87 FFLVVTAANISHDGNYLCRMKLGET  111 (221)
T ss_pred             EEEEEEeeeecCCceEEEEEEcCCC
Confidence            4789999999999999999998764

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=95.11  E-value=0.071  Score=33.13  Aligned_cols=69  Identities=14%  Similarity=0.166  Sum_probs=36.8

Q ss_pred             ccceeeEEeecC-CC-ccEEEEecCCCCcccccccceEEEecCCCCCC-eeeEEEcccCCCCCEEEEEEEEEe
Q psy534           11 FQMLSVGDFADD-ED-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFG-MASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        11 ~~~~~~~~w~~g-~p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..++.++|++.| .| ...+.|++++.... .+..........+.... ...|.+..-.-.+...|.|++.+.
T Consensus        17 ~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~-~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~   88 (100)
T cd07699          17 SGKATLVCLINDFYPGFATVQWKVDGATVS-SGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHE   88 (100)
T ss_pred             CCCcEEEEEEEeEECCCCEEEEEECCEECc-ccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEec
Confidence            567899999997 45 55789999885421 11111011111111111 233334333333467999999764

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=94.91  E-value=0.016  Score=36.20  Aligned_cols=22  Identities=23%  Similarity=0.448  Sum_probs=19.7

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..|.|.+++.+|+|.|.|.+.+
T Consensus        69 ~~L~I~~~~~sDsgtY~Ca~~~   90 (104)
T cd05720          69 FVLTLKNFQKENEGYYFCSVAS   90 (104)
T ss_pred             EEEEECCCCHHHCEEEEEEEcc
Confidence            3799999999999999998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=94.83  E-value=0.018  Score=36.57  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=20.2

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .+|+|.+++.+|+|.|.|.+..
T Consensus        72 ~sL~I~~~~~~Dsg~Y~C~~~~   93 (116)
T cd07706          72 ISLTISALQLEDSAKYFCALST   93 (116)
T ss_pred             EEEEECCCCHHHCEEEEEEEEC
Confidence            4799999999999999999985

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd00096 Ig Immunoglobulin domain

Probab=94.77  E-value=0.037  Score=30.13  Aligned_cols=24  Identities=42%  Similarity=0.746  Sum_probs=21.4

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVL  128 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~  128 (145)
                      ..|.|.+++.+|.|.|.|.+.+..
T Consensus        43 ~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096          43 STLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             EEEEECccCcccCcEEEEEEecCc
Confidence            378999999999999999998875

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=94.68  E-value=0.022  Score=35.74  Aligned_cols=21  Identities=29%  Similarity=0.741  Sum_probs=19.1

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|+|.+++.+|+|.|.|...+
T Consensus        73 ~L~I~~~~~~Dsg~YyCa~~~   93 (107)
T cd07700          73 RLHINRVKPEDSGTYFCMTVG   93 (107)
T ss_pred             EEEECCCCHHHCEEEEEeEcC
Confidence            699999999999999999763

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=94.68  E-value=0.12  Score=31.74  Aligned_cols=68  Identities=15%  Similarity=0.099  Sum_probs=35.2

Q ss_pred             cceeeEEeecCC-Cc-cEEEEecCCCCcccccccceEEEecCCCCCC-eeeEEEcccCCCCCEEEEEEEEEe
Q psy534           12 QMLSVGDFADDE-DI-PVYIWYDSYPTHEAEEYKGRISRVDKESPFG-MASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        12 ~~~~~~~w~~g~-p~-p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .++.+.|.+.|- |. ..+.|++++............ ...++.... ...|.+..-.-.+...|.|++.+.
T Consensus        15 ~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~-~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~   85 (94)
T cd05847          15 ETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAP-QKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQ   85 (94)
T ss_pred             CCEEEEEEEEeEECCCCEEEEEECCEECcCceeeccc-EECCCCcEEEEEEEEEchHHhcCCCeEEEEEEEC
Confidence            457899999984 54 568999987542111111111 111111111 233434422223567999999753

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=94.14  E-value=0.34  Score=30.79  Aligned_cols=67  Identities=15%  Similarity=0.154  Sum_probs=36.6

Q ss_pred             hccceeeEEeecC-CCc-cEEEEecCCCCcccccccceEEEecCCC-CCC-eeeEEEcccCCCCCE-EEEEEEEEe
Q psy534           10 IFQMLSVGDFADD-EDI-PVYIWYDSYPTHEAEEYKGRISRVDKES-PFG-MASLNLTKIRESDQG-WYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~g-~p~-p~~~w~k~~~~~~~~~~~~R~~~~~~~~-~~~-~~sL~I~~v~~~D~G-~Y~C~~~~~   80 (145)
                      .+.+..++|++.| .|. ..+.|++|+.... ... ... ....+. ... ...|.+. ....|.| .|.|++.+.
T Consensus        20 ~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~-~~~-~~~-~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~   91 (111)
T cd05772          20 PGQSVNFTCSAHGFSPRDITVKWLKNGNELS-AEQ-PNI-TPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHR   91 (111)
T ss_pred             CCCCEEEEEEEeeEeCCCCEEEEEECCEECc-ccc-cce-eeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeC
Confidence            4556789999997 464 6899999985422 111 111 111110 011 2334444 3455554 499999764

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=93.73  E-value=0.17  Score=30.04  Aligned_cols=69  Identities=10%  Similarity=0.134  Sum_probs=38.2

Q ss_pred             hhhccceeeEEeecCC-Ccc-EEEEecCCCCcccccccceEEEecCCCCCC-eeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDE-DIP-VYIWYDSYPTHEAEEYKGRISRVDKESPFG-MASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~-p~p-~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+...+.+.|.+.|. |.. .+.|++++........... .....+.... ...|.+.   ..+...|.|++.+.
T Consensus         5 ~~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~-~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~   76 (83)
T PF07654_consen    5 EELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTP-PPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHE   76 (83)
T ss_dssp             HHSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEE-EEEETTSEEEEEEEEEEE---TTTTGGEEEEEEET
T ss_pred             ccCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecc-cccccccceeeeEEEEec---CCCCCEEEEEEEEC
Confidence            4457888999999974 655 5899998753221111111 1111101111 3334444   55566899999764

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=93.72  E-value=0.13  Score=29.40  Aligned_cols=38  Identities=18%  Similarity=0.135  Sum_probs=25.9

Q ss_pred             CCcEEEEEEeE------Ee-------cCCcEEEEcccCCCCCeeeEEEEecC
Q psy534           89 NGTWFHLDVHG------VF-------NDGTELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus        89 ~g~~~~l~c~~------~~-------~~~~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .|..|+|+|+.      +.       ..+..+.+.+-. ++.|.|.|.+.+.
T Consensus         6 sGTtVtlTCP~~~~~i~W~~n~~~~~g~~~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           6 SGTTVTVTCPLSGDDIKWKKNDQVSQGSDEKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             eccEEEEECCCCCCCceEEeCCccCCCCCceEEeeccC-CCCceEEEEeCCC
Confidence            57889999971      11       122345556666 8899999999754

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=93.59  E-value=0.26  Score=30.50  Aligned_cols=26  Identities=4%  Similarity=-0.101  Sum_probs=19.5

Q ss_pred             ccceeeEEeecCC-C-ccEEEEecCCCC
Q psy534           11 FQMLSVGDFADDE-D-IPVYIWYDSYPT   36 (145)
Q Consensus        11 ~~~~~~~~w~~g~-p-~p~~~w~k~~~~   36 (145)
                      ..+..++|.+.|- | ...+.|.+++..
T Consensus        16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~   43 (96)
T cd07697          16 QGQGIYLCLLENFFPDVIQVHWREGNSP   43 (96)
T ss_pred             CCCEEEEEEEEEEeCCCeEEEEEECCEE
Confidence            3467999999984 5 445899999854

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=93.37  E-value=0.085  Score=31.16  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=19.4

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.+.....+|.|.|+|.|.|...
T Consensus        47 ~L~i~~~~~~~~~~y~C~a~n~~l   70 (82)
T cd05759          47 TLPITPSDHDTGRTFTCRARNEAL   70 (82)
T ss_pred             EEEEeCceecCCCEEEEEEcCccC
Confidence            577777777788999999999764

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=93.26  E-value=0.078  Score=36.78  Aligned_cols=24  Identities=29%  Similarity=0.575  Sum_probs=20.6

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEec
Q psy534          103 DGTELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ....|+|.+++++|+|.|+|...-
T Consensus        83 ~~StItIknVt~sDeGcY~C~F~t  106 (189)
T PHA02987         83 NESTILIKNVSLKDNGCYTCIFNT  106 (189)
T ss_pred             CcceEEEEeCChhhCeEEEEEEEe
Confidence            345899999999999999998653

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=93.12  E-value=0.34  Score=27.74  Aligned_cols=48  Identities=15%  Similarity=0.176  Sum_probs=27.9

Q ss_pred             ccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           11 FQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        11 ~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ++-|.+.|-.....   +.|++++....  .              ....+.+.+-. +++|.|.|.+.
T Consensus         7 GTtVtlTCP~~~~~---i~W~~n~~~~~--g--------------~~~~~~~~~~~-e~~G~Y~C~~~   54 (65)
T cd07692           7 GTTVTVTCPLSGDD---IKWKKNDQVSQ--G--------------SDEKYLSLNHF-SSSGYYHCTAD   54 (65)
T ss_pred             ccEEEEECCCCCCC---ceEEeCCccCC--C--------------CCceEEeeccC-CCCceEEEEeC
Confidence            45566667544222   88999974311  1              02223333444 89999999874

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=93.08  E-value=0.49  Score=29.50  Aligned_cols=27  Identities=4%  Similarity=0.046  Sum_probs=20.7

Q ss_pred             hccceeeEEeecCC-Ccc-EEEEecCCCC
Q psy534           10 IFQMLSVGDFADDE-DIP-VYIWYDSYPT   36 (145)
Q Consensus        10 ~~~~~~~~~w~~g~-p~p-~~~w~k~~~~   36 (145)
                      .+..+.++|++.|. |.. .+.|++++..
T Consensus        15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~   43 (102)
T cd05768          15 LQETATLTCLVKGFSPSDIFVKWLQNGQP   43 (102)
T ss_pred             cCCceEEEEEEeeEeCCCCEEEEEECCEE
Confidence            35678999999984 544 5799999754

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=92.67  E-value=0.077  Score=33.90  Aligned_cols=21  Identities=19%  Similarity=0.420  Sum_probs=19.4

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.++..+|+|.|.|.+..
T Consensus        77 ~L~I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          77 YLQLNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             EEEECCCCHHHCEEEEEEEEc
Confidence            699999999999999998865

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>KOG3515|consensus

Probab=92.66  E-value=0.57  Score=39.22  Aligned_cols=38  Identities=21%  Similarity=0.048  Sum_probs=26.4

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCCCcEEEEeCeeEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLYPDLLVVLGSFHIHT  143 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~~v~~~~~~~~~  143 (145)
                      .+.+.++.+.|.|.|.|.|.|..|.......+.++.+|
T Consensus       459 ~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp  496 (741)
T KOG3515|consen  459 LGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSP  496 (741)
T ss_pred             ccccceeeeccCCcceeeeccCCCceeeEEeeccccCC
Confidence            44466789999999999999999833333334444433

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=91.60  E-value=0.7  Score=29.58  Aligned_cols=69  Identities=10%  Similarity=0.084  Sum_probs=35.9

Q ss_pred             cceeeEEeecCC-Cc-cEEEEecCCCCccccccc-ceEEEecCCCCCC-eeeEEEcccCCCC-CEEEEEEEEEec
Q psy534           12 QMLSVGDFADDE-DI-PVYIWYDSYPTHEAEEYK-GRISRVDKESPFG-MASLNLTKIRESD-QGWYECKVVFLN   81 (145)
Q Consensus        12 ~~~~~~~w~~g~-p~-p~~~w~k~~~~~~~~~~~-~R~~~~~~~~~~~-~~sL~I~~v~~~D-~G~Y~C~~~~~~   81 (145)
                      ..+.++|.+.|. |. ..+.|++++..... ... .......++.... ...|.|..-.-.| ...|.|++.+..
T Consensus        19 ~~~tL~Cla~gFyP~~I~V~W~kng~~l~~-g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g   92 (115)
T cd05769          19 RKATLVCLATGFYPDHVSLSWKVNGKEVTD-GVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYG   92 (115)
T ss_pred             CCcEEEEEEEeEeCCCcEEEEEECCEECCC-CcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeC
Confidence            457889999984 65 47899998754221 211 1111111100011 3334444333223 568999997643

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=91.51  E-value=0.28  Score=32.11  Aligned_cols=33  Identities=33%  Similarity=0.385  Sum_probs=21.3

Q ss_pred             eEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           45 RISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        45 R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +..+  .+...++.+|.+...+.- .|.|+|++...
T Consensus        75 sa~i--~~l~kG~aSL~~~~~~a~-~GnYTCeVt~~  107 (130)
T PF08204_consen   75 SAKI--SELLKGNASLKMDKSDAV-EGNYTCEVTEL  107 (130)
T ss_dssp             T-BE--GGGGGTB--EEEEHHHHH--EEEEEEEEET
T ss_pred             ccch--hHhhCCCEEEEEcchhcc-ccceEEEEEec
Confidence            4444  345677999999986666 99999999743

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=91.04  E-value=1.6  Score=26.86  Aligned_cols=65  Identities=11%  Similarity=0.151  Sum_probs=36.2

Q ss_pred             hhccceeeEEeecCC--Cc-cEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEc---ccCCC---CCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDE--DI-PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLT---KIRES---DQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~--p~-p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~---~v~~~---D~G~Y~C~~~~   79 (145)
                      .++.+..++|.+.|-  |. ..++|.++++........  ..     ....+++.++.   .+..+   +.-.|.|.+.+
T Consensus        12 ~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~--~~-----~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H   84 (96)
T cd07696          12 LLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQ--PP-----ESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH   84 (96)
T ss_pred             ccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEec--cc-----ccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence            346788999999977  43 357999986432111110  01     11234444443   22333   34589999975


Q ss_pred             e
Q psy534           80 L   80 (145)
Q Consensus        80 ~   80 (145)
                      .
T Consensus        85 ~   85 (96)
T cd07696          85 P   85 (96)
T ss_pred             C
Confidence            4

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=90.86  E-value=0.36  Score=27.94  Aligned_cols=47  Identities=15%  Similarity=0.128  Sum_probs=31.7

Q ss_pred             ceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           13 MLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        13 ~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      .|.+.|-.    ...|.|+|+... ..               ..+.+|.+..+.+.-.|.|.|.+..
T Consensus         8 ~V~L~C~~----~tsi~W~kG~~~-~~---------------~~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           8 KVFLKCNG----ATNITWKKGKEI-LE---------------VSNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             eEEEEecC----CCcEEEecCccc-cc---------------ccccEEeccCcccCCCcceEecCcc
Confidence            35566622    356999995422 10               1166778888889999999998853

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd00098 IgC Immunoglobulin Constant domain

Probab=90.60  E-value=0.29  Score=29.45  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=18.2

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.+......+.|.|+|.|.+...
T Consensus        63 ~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          63 QLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             EEEECHHHhCCCCCEEEEEEeCCC
Confidence            455655555689999999999754

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=90.34  E-value=1.4  Score=27.45  Aligned_cols=71  Identities=8%  Similarity=-0.006  Sum_probs=40.5

Q ss_pred             HHhhhccceeeEEeecC-CCc--cEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCE-EEEEEEEE
Q psy534            6 AVKSIFQMLSVGDFADD-EDI--PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQG-WYECKVVF   79 (145)
Q Consensus         6 ~~~~~~~~~~~~~w~~g-~p~--p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G-~Y~C~~~~   79 (145)
                      .+-..+.++.+.|-+.+ .|.  ..+.|+++........+.+....-.  .......+.|.- +++|.| .|.|+|..
T Consensus        10 ~~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks--~~~~~~~vtftp-treD~g~~fsC~A~L   84 (99)
T cd07689          10 GPLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKS--LETKSLEVTFTP-TIEDIGKVLVCRAKL   84 (99)
T ss_pred             CcccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCC--CCCcceeEEEec-chhhCCcEEEEEEEE
Confidence            34467889999999884 455  6788998875422222222110000  001123444544 477777 99999953

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=89.50  E-value=1.3  Score=27.27  Aligned_cols=26  Identities=12%  Similarity=0.227  Sum_probs=19.5

Q ss_pred             ccceeeEEeecCC-C-ccEEEEecCCCC
Q psy534           11 FQMLSVGDFADDE-D-IPVYIWYDSYPT   36 (145)
Q Consensus        11 ~~~~~~~~w~~g~-p-~p~~~w~k~~~~   36 (145)
                      ...+.+.|.+.|. | ...++|++++..
T Consensus        16 ~~~~~L~C~a~gFyP~~i~vtW~k~g~~   43 (95)
T cd04985          16 SDSVTLGCLATGFLPEPVTFTWNSGSNS   43 (95)
T ss_pred             CCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence            3457899999984 5 446899999854

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02982 hypothetical protein; Provisional

Probab=88.26  E-value=1.9  Score=30.69  Aligned_cols=67  Identities=13%  Similarity=0.216  Sum_probs=44.0

Q ss_pred             hccceeeEEeec-CCCccEEEEecCCCCcccc----------------cccceEEEecCCCCCCeeeEEEcccCCCCCEE
Q psy534           10 IFQMLSVGDFAD-DEDIPVYIWYDSYPTHEAE----------------EYKGRISRVDKESPFGMASLNLTKIRESDQGW   72 (145)
Q Consensus        10 ~~~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~----------------~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~   72 (145)
                      -..++.+-|-++ +.......|++....-+..                ++++...+.   .....++|.|.++..+..|-
T Consensus        38 vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~s---v~g~~STLTIkk~~i~N~GC  114 (251)
T PHA02982         38 VDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALS---VSGNSSTFTMKKPDPQNLGC  114 (251)
T ss_pred             CCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEE---EeccceeEEeccCCcccCCc
Confidence            357788888877 4556678898865421110                122222221   12347889999999999999


Q ss_pred             EEEEEEE
Q psy534           73 YECKVVF   79 (145)
Q Consensus        73 Y~C~~~~   79 (145)
                      |.|++..
T Consensus       115 Ytc~~ks  121 (251)
T PHA02982        115 FTCEAKD  121 (251)
T ss_pred             eEEEEec
Confidence            9999953

>PHA02982 hypothetical protein; Provisional

Probab=87.09  E-value=1.9  Score=30.65  Aligned_cols=27  Identities=19%  Similarity=0.375  Sum_probs=23.8

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +.++|+|+.+..+..|=|+|+|....+
T Consensus        98 ~~STLTIkk~~i~N~GCYtc~~ks~~~  124 (251)
T PHA02982         98 NSSTFTMKKPDPQNLGCFTCEAKDAEG  124 (251)
T ss_pred             cceeEEeccCCcccCCceEEEEecCCC
Confidence            345899999999999999999998775

>KOG1480|consensus

Probab=87.05  E-value=0.22  Score=41.58  Aligned_cols=58  Identities=16%  Similarity=0.204  Sum_probs=40.6

Q ss_pred             eeeEEeec-CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           14 LSVGDFAD-DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        14 ~~~~~w~~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +...|... +.|+.-..|+|++.. +++  ...+      ....+..|+|..+.+.|+|.|+|++.+.
T Consensus       147 ~~l~cr~pe~~paae~~w~k~e~~-~~p--d~n~------~~~~d~~li~~~arlsd~~nytc~a~ni  205 (909)
T KOG1480|consen  147 LQLPCRPPEGDPKAEVEWLKNEVV-IDP--DANV------IRASDHNLIISQARLSDSGNYTCEATNI  205 (909)
T ss_pred             ccccccCcccchhhhhhccccCCC-CCc--cccc------hhhhcCCccccchhhhhcccceeeeehh
Confidence            34445443 777888899999853 333  1111      1234889999999999999999999654

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=84.52  E-value=2.8  Score=26.14  Aligned_cols=23  Identities=22%  Similarity=0.534  Sum_probs=16.5

Q ss_pred             EEEEcccCCCCCe-eeEEEEecCCC
Q psy534          106 ELRISNIRSQDIG-DYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G-~Y~C~a~n~~g  129 (145)
                      +|.+. +.++|.| .|+|+|.+.++
T Consensus        63 tlt~~-~~r~D~g~~~sC~A~l~l~   86 (100)
T cd05755          63 TITIT-VDREDHGANFSCETELDLR   86 (100)
T ss_pred             EEEEe-cchhhCCcEEEEEEEeccC
Confidence            34543 4567766 69999999876

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=82.57  E-value=4.1  Score=31.09  Aligned_cols=20  Identities=20%  Similarity=0.212  Sum_probs=15.7

Q ss_pred             eeeEEeecCC-Cc-cEEEEecC
Q psy534           14 LSVGDFADDE-DI-PVYIWYDS   33 (145)
Q Consensus        14 ~~~~~w~~g~-p~-p~~~w~k~   33 (145)
                      +.+.||+.|- |. ..+.|.|+
T Consensus       217 ~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        217 TTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             ceEEEEEEeEeCCccEEEEEec
Confidence            5789999985 54 45789999

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=81.76  E-value=1.5  Score=32.22  Aligned_cols=25  Identities=28%  Similarity=0.465  Sum_probs=22.3

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVL  128 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~  128 (145)
                      .| .|.+.+...+++|.|+|..+...
T Consensus        36 TG-~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   36 TG-KLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             Cc-eEEeeccccccCCceEEEEEEEe
Confidence            44 79999999999999999998875

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	145
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	7e-13
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	3e-12
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	3e-11
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-10
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-10
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	8e-10
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	1e-09
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-09
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	8e-09
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	8e-09
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	8e-08
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	9e-08
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-04
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	9e-07
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	1e-06
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-06
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	3e-06
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-06
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-05
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	5e-06
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	9e-06
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	9e-04
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	3e-05
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-05
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	3e-05
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-05
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-05
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	5e-05
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	7e-04
2ens_A	96	Advanced glycosylation END product-specific recept	5e-05
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	6e-05
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	6e-05
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	6e-05
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	7e-05
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-04
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	8e-05
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	8e-05
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	8e-05
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-04
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	9e-05
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	9e-05
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-04
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	1e-04
1qfo_A	119	Protein (sialoadhesin); immunoglobulin superfamily	1e-04
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	1e-04
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-04
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-04
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-04
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-04
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-04
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-04
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-04
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-04
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-04
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-04
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-04
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-04
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-04
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-04
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	5e-04
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-04
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	5e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	6e-04
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	6e-04
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	7e-04
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	7e-04
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	8e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-04
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	7e-04

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 60.7 bits (147), Expect = 7e-13
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 19  FADDEDIPVYIWYD--SYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK 76
           +       V+++ +       +A EY+GR   + +    G  +L +  +R SD+G Y C 
Sbjct: 44  YRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCF 103

Query: 77  VVFLNRSPNSHKNGTWFHLDVHGVF 101
                R  +  +      L V   F
Sbjct: 104 F----RDHSYQEEAAV-ELKVEDPF 123

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 60.5 bits (146), Expect = 3e-12
 Identities = 25/152 (16%), Positives = 44/152 (28%), Gaps = 46/152 (30%)

Query: 23  EDIPVYIWYDSYPTHEA-EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV---- 77
            D  + ++           + KGR+     +   G AS+N+T ++ SD G Y+CKV    
Sbjct: 48  VDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAP 107

Query: 78  ------VFLN-----RSPNSHKNGT-----------------------WFHLD------- 96
                   L             +G+                       W  L        
Sbjct: 108 GVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPT 167

Query: 97  VHGVFNDGTELRISNIRSQDIGDYTCLATHVL 128
                     + + N  S+  G Y+C   + +
Sbjct: 168 PWLAEMTSPVISVKNASSEYSGTYSCTVQNRV 199

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 58.1 bits (140), Expect = 3e-11
 Identities = 14/95 (14%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 21  DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80
           +D++I  ++  +     +   Y+ R   +  +   G A+L +T ++  D G Y C + + 
Sbjct: 43  EDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG 102

Query: 81  NRSPNS-----HKNGTWFHLDVHGVFNDGTELRIS 110
                      +      +  +  V    +E  ++
Sbjct: 103 GADYKRITVKVNAPYNKINQRILVVDPVTSEHELT 137

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 56.7 bits (136), Expect = 2e-10
 Identities = 22/146 (15%), Positives = 37/146 (25%), Gaps = 41/146 (28%)

Query: 20  ADDEDIPVYIWY-----------DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRES 68
           A  +    + W             S+ T    +   R          G   L +  ++  
Sbjct: 18  ASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIE 77

Query: 69  DQGWYECKV-----------VFLNRSPNSH-KNG-----------------TWFHLDVHG 99
           D   Y C+V             L  + ++H   G                          
Sbjct: 78  DSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN 137

Query: 100 VFNDGTELRISNIRSQDIGDYTCLAT 125
           +    T L +S +  QD G +TC   
Sbjct: 138 IQGGKT-LSVSQLELQDSGTWTCTVL 162

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 56.6 bits (136), Expect = 2e-10
 Identities = 24/183 (13%), Positives = 42/183 (22%), Gaps = 65/183 (35%)

Query: 21  DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80
             E   + +++ +     +E  +         +    ASL +  +R  D+G Y C  V  
Sbjct: 42  HGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTF 101

Query: 81  NRSPNSHK---------------------------------NG------TWF-------- 93
            +   S                                    G      TW         
Sbjct: 102 PQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPN 161

Query: 94  ----HLDVHGVFNDGTELRISNIRSQDIGDYTCLATH--------------VLYPDLLVV 135
                  + G     +   +      D  + TC   H              V YP  + +
Sbjct: 162 TSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSI 221

Query: 136 LGS 138
            G 
Sbjct: 222 SGY 224

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126

 Score = 52.6 bits (126), Expect = 8e-10
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 17  GDFADDEDIPVYIWYDSYPTHE--AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE 74
               + +   V I Y     ++    + KGR+     +   G AS+N+T ++ SD G Y+
Sbjct: 46  SPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQ 105

Query: 75  CKV 77
           CKV
Sbjct: 106 CKV 108

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 53.6 bits (128), Expect = 1e-09
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 14  LSVGDFADDEDIPVYIWYD--SYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQG 71
           + +   +      V ++ D       ++  Y+GR S +      G A+L +  +  SD G
Sbjct: 37  MELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSG 96

Query: 72  WYECKV 77
            Y C  
Sbjct: 97  KYLCYF 102

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 52.3 bits (125), Expect = 2e-09
 Identities = 22/146 (15%), Positives = 37/146 (25%), Gaps = 41/146 (28%)

Query: 20  ADDEDIPVYIWYD-----------SYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRES 68
           A  +    + W +           S+ T    +   R          G   L +  ++  
Sbjct: 19  ASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIE 78

Query: 69  DQGWYECKV-----------VFLNRSPNSH-KNG-----------------TWFHLDVHG 99
           D   Y C+V             L  + ++H   G                          
Sbjct: 79  DSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPR-GK 137

Query: 100 VFNDGTELRISNIRSQDIGDYTCLAT 125
               G  L +S +  QD G +TC   
Sbjct: 138 NIQGGKTLSVSQLELQDSGTWTCTVL 163

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 51.1 bits (122), Expect = 8e-09
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 5/100 (5%)

Query: 26  PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPN 85
            + +   S   +   EYK R       +     S+ +  +R SD+G YEC V+   +   
Sbjct: 37  KMVLTMMSGDMNIWPEYKNRTIFDITNN----LSIVILALRPSDEGTYECVVLKYEKDAF 92

Query: 86  SHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
             ++     L V   F     +    I + +I    C  +
Sbjct: 93  KREHLAEVTLSVKADFPT-PSISDFEIPTSNIRRIICSTS 131

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 51.2 bits (122), Expect = 8e-09
 Identities = 17/151 (11%), Positives = 45/151 (29%), Gaps = 49/151 (32%)

Query: 24  DIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV------ 77
           ++           ++      R + ++++ P G A  ++  ++  D G Y C V      
Sbjct: 33  ELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAW 92

Query: 78  ----VFLN----------RSPNSHKNG----------------TWFHL----------DV 97
               + +           R       G                +W ++            
Sbjct: 93  DYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTP 152

Query: 98  HGVFNDGTELRISNIRSQDIGDYTCLATHVL 128
            G++   + LR   ++ Q   +++C+  +  
Sbjct: 153 EGLYQVTSVLR---LKPQPSRNFSCMFWNAH 180

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S* Length = 119

 Score = 46.9 bits (111), Expect = 8e-08
 Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 21 DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79
            + + +++   +    +  +Y+GR+  V  + P G  SL +  ++  D+  Y C+V +
Sbjct: 43 GSDSVTIFLRDSTGDHIQQAKYRGRLK-VSHKVP-GDVSLQINTLQMDDRNHYTCEVTW 99

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 18/166 (10%), Positives = 41/166 (24%), Gaps = 57/166 (34%)

Query: 21  DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV--- 77
           +     V I+  S        Y+ R+  +      G  ++ L+++   D+G Y C+    
Sbjct: 57  NGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDG--TIRLSRLELEDEGVYICEFATF 114

Query: 78  ----------VFLNRSPNSHKNG-------------------------------TWF--- 93
                     + +   P +   G                               +W    
Sbjct: 115 PTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRL 174

Query: 94  --------HLDVHGVFNDGTELRISNIRSQDIGDYTCLATHVLYPD 131
                     + +G     +  R+   R        C+  + +   
Sbjct: 175 KGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRF 220

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 47.1 bits (111), Expect = 4e-07
 Identities = 22/148 (14%), Positives = 41/148 (27%), Gaps = 48/148 (32%)

Query: 26  PVYIWYDSYPTHEAEEYKGRISRVDKES----PFGMASLNLTKIRESDQGWYECKVV--- 78
               +   YP+ + +  K     +  +S       +++L +  +  SDQG Y C      
Sbjct: 254 VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 313

Query: 79  ---------------FLNRSPNSHKNG----------------------TWFH----LDV 97
                          F+                                 W+     L+ 
Sbjct: 314 MTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLES 373

Query: 98  HGVFNDGTELRISNIRSQDIGDYTCLAT 125
           +     G  L I  +  +D G+YT + T
Sbjct: 374 NHTIKAGHVLTIMEVSERDTGNYTVILT 401

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 13/133 (9%), Positives = 28/133 (21%), Gaps = 50/133 (37%)

Query: 43  KGRISRVDKESPFGMASLNLTKIRESDQGWYECKV----------VFLNR---------- 82
           + R+   +        +L + K+  +D G Y+C            V++            
Sbjct: 71  EQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVS 130

Query: 83  -----------------------SPNSH-------KNGTWFHLDVHGVFNDGTELRISNI 112
                                    N +           +        ++      I + 
Sbjct: 131 DQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSY 190

Query: 113 RSQDIGDYTCLAT 125
                G   C A 
Sbjct: 191 MISYAGMVFCEAK 203

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 45.4 bits (107), Expect = 9e-07
 Identities = 26/167 (15%), Positives = 40/167 (23%), Gaps = 67/167 (40%)

Query: 20  ADDEDIPVYIWY----------------DSYPTHEAEEYKGRISRVDKESPFGMASLNLT 63
                +  + WY                +S      + Y GR      E  +   SL   
Sbjct: 23  NLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGR------EIIYSNGSLLFQ 76

Query: 64  KIRESDQGWYECKV-------------------------------------VFLNRSPNS 86
            I   D G Y   +                                     V L    N 
Sbjct: 77  MITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSND 136

Query: 87  HK-NGTWFH-------LDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
              N  W          +   +  + + LRI  I+ +D G+Y C  +
Sbjct: 137 IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEIS 183

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 18/150 (12%), Positives = 38/150 (25%), Gaps = 41/150 (27%)

Query: 14  LSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRV---DKESPFGMASLNLTKIRESDQ 70
           L +  F   +DI    W  +    +  +++         D    F   +L +  ++  DQ
Sbjct: 19  LDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQ 78

Query: 71  GWYECKVVFLNRSPNSHKNGTWFHLDVHGV-----------------------------F 101
             Y+  +   +    +      F L +                                +
Sbjct: 79  DIYKVSIY--DTKGKNVLEKI-FDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLY 135

Query: 102 NDGTELR------ISNIRSQDIGDYTCLAT 125
            DG  L+           +     + C A 
Sbjct: 136 QDGKHLKLSQRVITHKWTTSLSAKFKCTAG 165

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 14  LSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWY 73
           +  G++    +   ++  DSY      ++ GR S  +  +P    +L LT +   D G Y
Sbjct: 51  VFKGNYNWQGEGLGFVESDSYKES-FGDFLGRASVANLAAP----TLRLTHVHPQDGGRY 105

Query: 74  ECKVVFLNRSPNSHKNGTWFHLDVHGV 100
            C+V   +       +     L V G 
Sbjct: 106 WCQVAQWSIRTEFGLDAKSVVLKVTGH 132

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 21  DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80
            D+     ++Y S  +     ++ R   V         SL L  ++++D+G Y C++   
Sbjct: 48  KDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFH-NDGSLLLQDVQKADEGIYTCEIRLK 106

Query: 81  NRSPNSHKN 89
           N S    K 
Sbjct: 107 NESMVMKKP 115

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 43.0 bits (101), Expect = 3e-06
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 8/57 (14%)

Query: 21 DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
           D+ + +         H +  +K R++      P     L L  +  +D G Y C  
Sbjct: 42 QDQLLAIC--NADLGWHISPSFKDRVA------PGPGLGLTLQSLTVNDTGEYFCIY 90

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 44.6 bits (105), Expect = 3e-06
 Identities = 24/145 (16%), Positives = 40/145 (27%), Gaps = 50/145 (34%)

Query: 20  ADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV-- 77
            + +D     W ++     +   +               +L L  +  +D   Y+C+   
Sbjct: 135 PETQDATYLWWVNNQSLPVSPRLQLSNGN---------RTLTLFNVTRNDTASYKCETQN 185

Query: 78  ---------VFLN-----------RSPNSHKNG-----------------TWFHLDVHGV 100
                    V LN               S+++G                 +WF       
Sbjct: 186 PVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGT--F 243

Query: 101 FNDGTELRISNIRSQDIGDYTCLAT 125
                EL I NI   + G YTC A 
Sbjct: 244 QQSTQELFIPNITVNNSGSYTCQAH 268

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 41.5 bits (97), Expect = 3e-05
 Identities = 23/162 (14%), Positives = 38/162 (23%), Gaps = 56/162 (34%)

Query: 23  EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGM----------ASLNLTKIRESDQGW 72
           + +  Y WY         +  G +    + +P             ASL +  I ++D G+
Sbjct: 26  QHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGF 85

Query: 73  YECKV---------------------VFLNRSPNSH------------------------ 87
           Y   V                          S NS                         
Sbjct: 86  YTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLWW 145

Query: 88  KNGTWFHLDVHGVF-NDGTELRISNIRSQDIGDYTCLATHVL 128
            N     +       N    L + N+   D   Y C   + +
Sbjct: 146 VNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPV 187

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 40.7 bits (95), Expect = 6e-05
 Identities = 18/147 (12%), Positives = 34/147 (23%), Gaps = 54/147 (36%)

Query: 20  ADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF 79
            + ++     W +      +   +            G  +L L  +  +D   Y C +  
Sbjct: 491 PEAQNTTYLWWVNGQSLPVSPRLQ---------LSNGNRTLTLFNVTRNDARAYVCGI-- 539

Query: 80  LNRSPNSHKNGTWFHLDVH----------------------------------------G 99
             ++  S        LDV                                         G
Sbjct: 540 --QNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRING 597

Query: 100 VF-NDGTELRISNIRSQDIGDYTCLAT 125
           +       L I+ I   + G Y C  +
Sbjct: 598 IPQQHTQVLFIAKITPNNNGTYACFVS 624

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A Length = 110

 Score = 42.1 bits (99), Expect = 5e-06
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 19  FADDEDIPVYIWYDSYPTHEA--EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK 76
           + D E++ +   Y      ++   +Y GR S  D +S     +L L  ++  D+G Y+C 
Sbjct: 33  WQDQENLVLNEVYLGKEKFDSVHSKYMGRTS-FDSDS----WTLRLHNLQIKDKGLYQCI 87

Query: 77  VVFLNRSPNSHKNGTWFHLDV 97
           +     +     +     L V
Sbjct: 88  IHHKKPTGMIRIHQMNSELSV 108

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 42.6 bits (100), Expect = 9e-06
 Identities = 22/153 (14%), Positives = 37/153 (24%), Gaps = 60/153 (39%)

Query: 26  PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSP 84
             Y W  + +P     +   R             +L +  +  SD+G Y C V   + + 
Sbjct: 40  LSYRWLLNEFPVFITMD--KRRFVSQTNG-----NLYIANVEASDKGNYSCFVSSPSITK 92

Query: 85  NSHKNG-----------------------------------------------TWFHLDV 97
           +                                                     W  +  
Sbjct: 93  SVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLE 152

Query: 98  -----HGVFNDGTELRISNIRSQDIGDYTCLAT 125
                  +   G  L+I NI+ +D G Y C A 
Sbjct: 153 PMPSTAEISTSGAVLKIFNIQLEDEGIYECEAE 185

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 25/153 (16%), Positives = 42/153 (27%), Gaps = 61/153 (39%)

Query: 26  PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV------- 77
           P   W+ D      +     +IS  D     G A L +  + +++ G Y  K        
Sbjct: 35  PEVSWFRDGQVISTSTLPGVQISFSD-----GRAKLTIPAVTKANSGRYSLKATNGSGQA 89

Query: 78  ---------------VFLNRSPNS------------------------HKNGTW------ 92
                           F+ R  +                         +++G        
Sbjct: 90  TSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLD 149

Query: 93  FHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
           F +   G   D   L I+    +D G Y+  AT
Sbjct: 150 FQISQEG---DLYSLLIAEAYPEDSGTYSVNAT 179

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 30/145 (20%), Positives = 46/145 (31%), Gaps = 48/145 (33%)

Query: 26  PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV------- 77
           P   W  D       + Y  ++ +    +   ++ LN+T +  +D G Y+C         
Sbjct: 459 PEISWELDGKKIANNDRY--QVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVA 516

Query: 78  ---VFLN-------RSPNSHK-------------NG------TWFH----LDV---HGVF 101
                LN       R                    G       W      L +     VF
Sbjct: 517 EHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVF 576

Query: 102 NDGTELRISNI-RSQDIGDYTCLAT 125
            +GT L I N+ R+ D   YTC+A 
Sbjct: 577 PNGT-LIIENVERNSDQATYTCVAK 600

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 40.3 bits (94), Expect = 7e-05
 Identities = 24/140 (17%), Positives = 39/140 (27%), Gaps = 48/140 (34%)

Query: 26  PVYIWY---DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV----- 77
           PV+ WY   +     +A     R+ +V         +L +      D G Y C V     
Sbjct: 278 PVFRWYKFIEGTTRKQAVVLNDRVKQVSG-------TLIIKDAVVEDSGKYLCVVNNSVG 330

Query: 78  -----VFLN--------RSPNSHK-------------NG------TWFHLDVHGVFNDGT 105
                  L           P +                G      +W         ++  
Sbjct: 331 GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV 390

Query: 106 ELRISNIRSQDIGDYTCLAT 125
            LRI +++ +D G Y C   
Sbjct: 391 -LRIESVKKEDKGMYQCFVR 409

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 37.2 bits (86), Expect = 9e-04
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 6/59 (10%)

Query: 89  NGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATHVLYPD-----LLVVLGSFHIH 142
                    +    +GT L + NI+  + G Y C A + +        ++ V    H H
Sbjct: 758 EYKDLKKSDNIRVEEGT-LHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHHHH 815

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1 Length = 124

 Score = 40.3 bits (94), Expect = 3e-05
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 4/70 (5%)

Query: 28  YIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSH 87
           +         E   +K RI  V  +  +   S+ +  +  SD G + C V      P+  
Sbjct: 52  HYAKGQPYIDEVGTFKERIQWV-GDPSWKDGSIVIHNLDYSDNGTFTCDV---KNPPDIV 107

Query: 88  KNGTWFHLDV 97
              +   L V
Sbjct: 108 GKTSQVTLYV 117

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 25/155 (16%), Positives = 42/155 (27%), Gaps = 58/155 (37%)

Query: 26  PVYIWYDSYPTHEAEE---YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV----- 77
              IWY +    + EE   ++   +R+ KE       L       +D G Y C +     
Sbjct: 48  LTLIWYWTRQDRDLEEPINFRLPENRISKEK----DVLWFRPTLLNDTGNYTCMLRNTTY 103

Query: 78  ---------VFLNRSPNSHKNG--------------------------------TWFH-- 94
                    V    S  +                                    TW+   
Sbjct: 104 CSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGC 163

Query: 95  ---LDVHGVFNDGTELRISNIRSQDIGDYTCLATH 126
               + + V  +G  L        + G+YTC+ T+
Sbjct: 164 YKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTY 198

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 39.7 bits (93), Expect = 3e-05
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 87  HKNGTWFHLD--VHGVFNDGTELRISNIRSQDIGDYTCLAT 125
            K+G              +G  L+I   +  D G YTC+A+
Sbjct: 43  RKDGVLVSTQDSRIKQLENGV-LQIRYAKLGDTGRYTCIAS 82

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 40.6 bits (95), Expect = 4e-05
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 74  ECKVVFLNRSPNSHKNGTWFH----LDVHGVFNDGTELRISNIRSQDIGDYTCLATHV 127
           +C +     S ++     W      L          E RI+  R++D G+Y C+   V
Sbjct: 24  QCNL---TSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFV 78

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 88  KNGTWFHL-DVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
           +NG      + + +    TEL + NI + D G Y C AT
Sbjct: 134 RNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRAT 172

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 38.9 bits (91), Expect = 5e-05
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 91  TWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATH 126
            W    V         L +  I  QD G Y+C+ATH
Sbjct: 43  HWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATH 78

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 39.0 bits (91), Expect = 6e-05
 Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 6/40 (15%)

Query: 91  TWFHLD-----VHGVFNDGTELRISNIRSQDIGDYTCLAT 125
            W  L         +  +G  L I N++  D G Y C  +
Sbjct: 44  VWTRLHNGKLPSRAMDFNGI-LTIRNVQPSDAGTYVCTGS 82

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 40.6 bits (95), Expect = 6e-05
 Identities = 23/147 (15%), Positives = 37/147 (25%), Gaps = 51/147 (34%)

Query: 26  PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV-------- 77
               W+      +    + RIS V  +      +L +      D G Y+C V        
Sbjct: 33  KDISWFSP-NGEKLSPNQQRISVVWNDDDSS--TLTIYNANIDDAGIYKCVVTAEDGTQS 89

Query: 78  ---VFLN--------RSPNSHK-------------NG------TWFHLDV---------H 98
              V +          +P   +                      W H             
Sbjct: 90  EATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRF 149

Query: 99  GVFNDGTELRISNIRSQDIGDYTCLAT 125
            V ++   L+I  I+  D G Y C   
Sbjct: 150 IVLSNNY-LQIRGIKKTDEGTYRCEGR 175

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 38.9 bits (91), Expect = 6e-05
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 100 VFNDGTELRISNIRSQDIGDYTCLAT 125
           +   GT L+I N+R  D G YTC+AT
Sbjct: 58  IQEQGT-LQIKNLRISDTGTYTCVAT 82

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 39.7 bits (93), Expect = 7e-05
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 98  HGVFNDGTELRISNIRSQDIGDYTCLAT 125
           + +  +G  L I ++   D G Y C A 
Sbjct: 55  YSIRENGQLLTILSVEDSDDGIYCCTAN 82

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 8/42 (19%)

Query: 91  TWFHLDV-------HGVFNDGTELRISNIRSQDIGDYTCLAT 125
           +W   D          V   G+ LRI N++ +D G Y C+A 
Sbjct: 133 SWIKGDSALRENSRIAVLESGS-LRIHNVQKEDAGQYRCVAK 173

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 40.2 bits (93), Expect = 8e-05
 Identities = 11/40 (27%), Positives = 15/40 (37%)

Query: 87  HKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLATH 126
           +KN     +D       G  L I N   +D G Y C   +
Sbjct: 164 YKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHY 203

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 39.6 bits (92), Expect = 8e-05
 Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 1/65 (1%)

Query: 14 LSVGDFADDEDIPVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGW 72
          L++ +F   +DI    W   S    E +       +           L +  +   D G 
Sbjct: 16 LNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGT 75

Query: 73 YECKV 77
          Y   V
Sbjct: 76 YNVTV 80

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 40.1 bits (93), Expect = 8e-05
 Identities = 15/142 (10%), Positives = 33/142 (23%), Gaps = 43/142 (30%)

Query: 26  PVYIW-YDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV------ 78
               W  ++    E   ++      ++          ++ +  +D G+Y C         
Sbjct: 258 FGLTWELENKALEEGNYFEMSTYSTNRTMIRI-LFAFVSSVARNDTGYYTCSSSKHPSQS 316

Query: 79  ---------FLNRSPNSH----KNG-----------------TWFHLDV-----HGVFND 103
                    F+N + +S                         TW              ++
Sbjct: 317 ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDN 376

Query: 104 GTELRISNIRSQDIGDYTCLAT 125
           G  +          G+Y   A 
Sbjct: 377 GYSISKFCNHKHQPGEYIFHAE 398

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 17/147 (11%), Positives = 29/147 (19%), Gaps = 48/147 (32%)

Query: 20  ADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV-- 77
            D       +W         +               G+ S+ + K+ E+  G Y   +  
Sbjct: 72  VDAPGNISCLWVF-------KHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQS 124

Query: 78  -----------------VFLNRSPNSHKNG-----------------TWFHLDVHGVFND 103
                            ++  R P   K                    W   D  G    
Sbjct: 125 EATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCK 184

Query: 104 GTELRIS-----NIRSQDIGDYTCLAT 125
                +       +      D  C A 
Sbjct: 185 EESPAVVKKEEKVLHELFGTDIRCCAR 211

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 39.9 bits (93), Expect = 9e-05
 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 88  KNGTWFHL--DVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
           K+G  ++       +  D   L     ++ D G Y C A 
Sbjct: 43  KDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAE 82

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 39.9 bits (93), Expect = 9e-05
 Identities = 23/140 (16%), Positives = 38/140 (27%), Gaps = 48/140 (34%)

Query: 26  PVYIWY---DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV----- 77
           P + WY   +     +A     R+ +V         +L +      D G Y C V     
Sbjct: 242 PSFRWYKFIEGTTRKQAVVLNDRVKQVSG-------TLIIKDAVVEDSGKYLCVVNNSVG 294

Query: 78  -----VFLN--------RSPNSHK-------------NG------TWFHLDVHGVFNDGT 105
                  L           P +                G      +W         ++  
Sbjct: 295 GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV 354

Query: 106 ELRISNIRSQDIGDYTCLAT 125
            LRI +++ +D G Y C   
Sbjct: 355 -LRIESVKKEDKGMYQCFVR 373

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 11/92 (11%), Positives = 23/92 (25%), Gaps = 4/92 (4%)

Query: 37  HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPN---SHKNGTWF 93
             A      +   D    + + +  +T + E  +    C +       +     + G   
Sbjct: 74  PMAGSTTIHLYVKDPAHSWNLLAQEVT-VVEGQEAVLPCLITDPALKDSVSLMREGGRQV 132

Query: 94  HLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
                  F+      I   +  D   Y C   
Sbjct: 133 LRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTM 164

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 11/58 (18%), Positives = 22/58 (37%)

Query: 21 DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV 78
            E   + +++ +     +E  +         +    ASL +  +R  D+G Y C  V
Sbjct: 42 HGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFV 99

>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A* Length = 119

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 29  IWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSHK 88
           + +   P    + ++GR   +       + +L L  ++  D G Y  +    + +     
Sbjct: 51  VIHSGDPKLVDKRFRGRAELMGNMDH-KVCNLLLKDLKPEDSGTYNFRFEISDSNRWLDV 109

Query: 89  NGTWFH 94
            GT   
Sbjct: 110 KGTTVT 115

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 10/79 (12%), Positives = 19/79 (24%), Gaps = 4/79 (5%)

Query: 21  DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80
                P     +   +           R           L L + +  D+  Y C V   
Sbjct: 40  RSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRA- 98

Query: 81  NRSPNSHKNGTWFHLDVHG 99
             +  + +      L+V  
Sbjct: 99  -GAAGTAEATA--RLNVFA 114

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 88  KNGTWFHL-DVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
           +NG      + + +    TEL + NI + D G Y C AT
Sbjct: 230 RNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRAT 268

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 7/42 (16%)

Query: 91  TWFHLDV-------HGVFNDGTELRISNIRSQDIGDYTCLAT 125
            WF  +          + +    L I  +R +D G YTC A 
Sbjct: 43  MWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQAC 84

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 8/35 (22%), Positives = 15/35 (42%)

Query: 91  TWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
            WF ++      + +EL  + +  +D G Y C   
Sbjct: 51  QWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVN 85

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 15/142 (10%), Positives = 33/142 (23%), Gaps = 43/142 (30%)

Query: 26  PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV------ 78
               W  ++    E   ++         +   +    ++ +  +D G+Y C         
Sbjct: 258 FGLTWELENKALEEGNYFEMSTY-STNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS 316

Query: 79  ---------FLNRSPNSH----KNGTWFHLDVHG----------------------VFND 103
                    F+N + +S          F   V                          ++
Sbjct: 317 ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDN 376

Query: 104 GTELRISNIRSQDIGDYTCLAT 125
           G  +          G+Y   A 
Sbjct: 377 GYSISKFCNHKHQPGEYIFHAE 398

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 17/144 (11%), Positives = 40/144 (27%), Gaps = 44/144 (30%)

Query: 26  PVYIWY-DSYP--THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR 82
           P   W  D       ++ + +  +   +++    ++ L +T ++ SD G Y+C V   ++
Sbjct: 33  PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQ 92

Query: 83  SPNSHK--------------------------------NG-------TWFH--LDVHGVF 101
           +  S                                   G        W    + +    
Sbjct: 93  TFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP 152

Query: 102 NDGTELRISNIRSQDIGDYTCLAT 125
             G +  +          ++C A 
Sbjct: 153 GHGPQRSLHVPGLNKTSSFSCEAH 176

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 88  KNGTWFHL--DVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
            NGT   +  D       G  +  + ++++D G Y C+AT
Sbjct: 43  MNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVAT 82

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 24/150 (16%), Positives = 41/150 (27%), Gaps = 49/150 (32%)

Query: 25  IPVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC-------- 75
           IP   W          E  K    R++ +   G +SL++  ++ SD G Y+C        
Sbjct: 29  IPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG 88

Query: 76  --KVVFLN--------RSPNSH-------------------------KNGTWFHLDVHG- 99
             K ++L+         +   +                         ++           
Sbjct: 89  HQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTN 148

Query: 100 ----VFNDGTELRISNIRSQDIGDYTCLAT 125
                      L I+     D G Y C AT
Sbjct: 149 LKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 24/150 (16%), Positives = 38/150 (25%), Gaps = 57/150 (38%)

Query: 25  IPVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV------ 77
                W  D+        YK  +            +L + K+ + D G Y C        
Sbjct: 226 PIKITWAKDNREIRPGGNYKMTLVENTA-------TLTVLKVTKGDAGQYTCYASNVAGK 278

Query: 78  -------------VFLNRSPNSHK-------------NG------TWFH----------L 95
                         F+ +   S                G       W+            
Sbjct: 279 DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKF 338

Query: 96  DVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
            +  V +    L + N+  +D GDYTC A 
Sbjct: 339 RMSFVESVAV-LEMYNLSVEDSGDYTCEAH 367

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 37.9 bits (88), Expect = 5e-04
 Identities = 26/148 (17%), Positives = 45/148 (30%), Gaps = 54/148 (36%)

Query: 25  IPVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV------ 77
               +WY D     E+ ++  R+S V+      +A L +  +   D G Y C+       
Sbjct: 320 EIKVLWYKDETEIQESSKF--RMSFVE-----SVAVLEMYNLSVEDSGDYTCEAHNAAGS 372

Query: 78  -------------VFLNRSPNS------------------------HKNGTWFHLDVH-G 99
                        VF  +                            HK+           
Sbjct: 373 ASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYK 432

Query: 100 VFNDGTE--LRISNIRSQDIGDYTCLAT 125
           + ++     + I N+ S DIG+Y C A+
Sbjct: 433 IMSENFLTSIHILNVDSADIGEYQCKAS 460

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 21/150 (14%), Positives = 35/150 (23%), Gaps = 57/150 (38%)

Query: 26  PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV------- 77
               WY D     +    +             +A+L + +  +S  G Y C         
Sbjct: 131 LQVSWYKDGELLKDDANLQTSFI-------HNVATLQILQTDQSHVGQYNCSASNPLGTA 183

Query: 78  ---VFLNRSPNSHK------------------------NG------TWFHLDVH------ 98
                L  S +                            G      TW   +        
Sbjct: 184 SSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGN 243

Query: 99  ---GVFNDGTELRISNIRSQDIGDYTCLAT 125
               +  +   L +  +   D G YTC A+
Sbjct: 244 YKMTLVENTATLTVLKVTKGDAGQYTCYAS 273

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 38  EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
               Y GRI    + +   + S+ + ++R SD G Y C+ 
Sbjct: 165 VNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQA 204

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 26 PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
             I   S   + + +Y GR +  +     G   +N+ ++ + D G Y+C +
Sbjct: 44 GGCITLISSEGYVSSKYAGRANLTNFPE-NGTFVVNIAQLSQDDSGRYKCGL 94

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 83  SPNSHKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
           +  S     +     +     G  LR++     + G+YT LA 
Sbjct: 288 NETSFIFTEFLEPAANETVRHGC-LRLNQPTHVNNGNYTLLAA 329

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 74  ECKVVFLNRSPNSH--KNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
            C          +   K+GT        V      L++ N   +D G Y+C   
Sbjct: 29  SCPPPGGGPMGPTVWVKDGTGLVPSER-VLVGPQRLQVLNASHEDSGAYSCRQR 81

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 26/159 (16%), Positives = 41/159 (25%), Gaps = 61/159 (38%)

Query: 22  DEDIPVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC----- 75
           +E      WY D   T  + E   RI +  +        L     +  D G Y C     
Sbjct: 32  NEHKGTITWYKDDSKTPVSTEQASRIHQHKE-------KLWFVPAKVEDSGHYYCVVRNS 84

Query: 76  --------KVVFLNRSPNSHKNG----------------------------------TWF 93
                      F+   PN   N                                    W+
Sbjct: 85  SYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWY 144

Query: 94  H----LDVHGVF--NDGTELRISNIRSQDIGDYTCLATH 126
                L +  +        L + N+  +  G+YTC A++
Sbjct: 145 KDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASY 183

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 15/103 (14%), Positives = 23/103 (22%), Gaps = 36/103 (34%)

Query: 59  SLNLTKIRESDQGWYECKV-----------------VFLNRSPNSHKNG----------- 90
           S  +T    +D G Y C+                  + L  S      G           
Sbjct: 49  SYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWK 108

Query: 91  -------TWFHLDVH-GVFNDGTELRISNIRSQDIGDYTCLAT 125
                   ++        F+  + L I        G Y C   
Sbjct: 109 DKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGM 151

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 22/163 (13%), Positives = 42/163 (25%), Gaps = 59/163 (36%)

Query: 20  ADDEDIPVYIW--YDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
             D    VY     ++  T   E+Y          +    A+L ++  R +D G + C  
Sbjct: 235 IKDVSSSVYSTWKRENSQTKLQEKY--NSWHHGDFNYERQATLTISSARVNDSGVFMCYA 292

Query: 78  V------------------FLNRSPNSHKNG-----------------------TWFH-- 94
                              F+N  P  +                           W +  
Sbjct: 293 NNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMN 352

Query: 95  ------------LDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
                        +        +EL ++ ++  + G YT L +
Sbjct: 353 RTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVS 395

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 22/150 (14%), Positives = 37/150 (24%), Gaps = 55/150 (36%)

Query: 25  IPVYIWY--DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC------- 75
                W+  +       ++   RIS V  +      +L +      D G Y+C       
Sbjct: 32  DKDISWFSPNGEKLSPNQQ---RISVVWNDDDSS--TLTIYNANIDDAGIYKCVVTAEDG 86

Query: 76  ----KVVFLN--------RSPNSHK-------------NG------TWFHLDV------- 97
                 V +          +P   +                      W H          
Sbjct: 87  TQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD 146

Query: 98  --HGVFNDGTELRISNIRSQDIGDYTCLAT 125
               V ++   L+I  I+  D G Y C   
Sbjct: 147 VRFIVLSNNY-LQIRGIKKTDEGTYRCEGR 175

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 98  HGVFNDGTELRISNIRSQDIGDYTCLAT----HVLYPDLLVVLGSFH 140
             V +DGT L  +N+  QD G YTC+ +    +      L V G+ H
Sbjct: 391 IAVLSDGT-LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHH 436

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 4/40 (10%)

Query: 89  NGTWFHLDVHG---VFNDGTELRISNIRSQDIGDYTCLAT 125
                    +G   VF DGT L +   + QD G Y C+A 
Sbjct: 423 RKHLVSAKSNGRLTVFPDGT-LEVRYAQVQDNGTYLCIAA 461

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 37.7 bits (87), Expect = 6e-04
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 32  DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNSH---- 87
           D +   + E    R   + K+ P  +  L+   +        +CKV   N    +H    
Sbjct: 201 DVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE-VTGECNVLLKCKVA--NIKKETHIVWY 257

Query: 88  KNGTWFHLDVHGVFNDGT-ELRISNIRSQDIGDYTCLAT 125
           K+     +D    F DG   L I+    +D G Y  +  
Sbjct: 258 KDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILK 296

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 36.5 bits (84), Expect = 6e-04
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 10/78 (12%)

Query: 26  PVYIWYDSYPTHEAEEYKGRIS---RVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR 82
           P   W+       A +    +      ++ S      + + K +++  G Y C+V     
Sbjct: 40  PTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVT---- 95

Query: 83  SPNSHKNGTW-FHLDVHG 99
                K  +  F L+VH 
Sbjct: 96  --YKDKFDSCSFDLEVHE 111

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 74  ECKVVFLNRSPNSH--KNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
           EC+    +  P     K+G+        +   G +L I+  R  D G Y C+ T
Sbjct: 132 ECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGT 185

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 27/147 (18%), Positives = 47/147 (31%), Gaps = 54/147 (36%)

Query: 26  PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV------- 77
              +WY D     E+ ++  R+S V+      +A L +  +   D G Y C+        
Sbjct: 129 IKVLWYKDETEIQESSKF--RMSFVE-----SVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181

Query: 78  ------------VFLNRSPNSH-KNG-----------------TWFHLDV-------HGV 100
                       VF  +        G                 +W            + +
Sbjct: 182 SSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKI 241

Query: 101 FNDG--TELRISNIRSQDIGDYTCLAT 125
            ++   T + I N+ S DIG+Y C A+
Sbjct: 242 MSENFLTSIHILNVDSADIGEYQCKAS 268

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 49/118 (41%)

Query: 56  GMASLNLTKIRESDQGWYECKV-------------------VFLNRSPNS---------- 86
             A+L + K+ + D G Y C                      F+ +   S          
Sbjct: 59  NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTR 118

Query: 87  ---------------HKNGTWFHLD----VHGVFNDGTELRISNIRSQDIGDYTCLAT 125
                          +K+ T         +  V +    L + N+  +D GDYTC A 
Sbjct: 119 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV-LEMYNLSVEDSGDYTCEAH 175

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 100 VFNDGTELRISNIRSQDIGDYTCLAT 125
           V NDGT L  S++   D G YTC+ T
Sbjct: 403 VLNDGT-LNFSHVLLSDTGVYTCMVT 427

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 36.8 bits (85), Expect = 7e-04
 Identities = 15/139 (10%), Positives = 40/139 (28%), Gaps = 47/139 (33%)

Query: 22  DEDIPVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL 80
             +  +  ++ +   T     +K R+  +DK +     +L +  + + D+G Y  +++  
Sbjct: 37  TTNQKILEYFPNGKKTVFESVFKDRV-DLDKTN----GALRIYNVSKEDRGDYYMRMLHE 91

Query: 81  NRSPNSHKNGTWFHLDVHGV-----------------------------FNDGTELR--- 108
                         ++V+ +                             +     LR   
Sbjct: 92  TEDQWK------ITMEVYEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR 145

Query: 109 ---ISNIRSQDIGDYTCLA 124
              +S   +     + C A
Sbjct: 146 QKTMSYQWTNLRAPFKCKA 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.7
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.69
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.69
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.68
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.68
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.67
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.64
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.64
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.64
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.63
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.63
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.63
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.62
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.62
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.61
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.6
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.6
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.6
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.6
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.6
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.6
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.6
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.6
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.59
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.59
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.59
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.59
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.58
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.58
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.57
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.57
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.57
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.57
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.57
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.57
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.56
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.56
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.56
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.56
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.56
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.56
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.56
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.56
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.55
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.55
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.55
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.55
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.55
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.55
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.54
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.54
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.54
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.54
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.54
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.54
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.53
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.53
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.53
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.53
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.52
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.52
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.52
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.52
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.52
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.52
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.52
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.51
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.51
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.5
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.5
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.5
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.49
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.49
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.49
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.49
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.49
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.49
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.48
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.48
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.48
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.48
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.47
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.47
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.47
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.46
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.46
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.45
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.45
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.45
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.45
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.45
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.45
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.45
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.44
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.44
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.44
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.44
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.44
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.44
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.43
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.43
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.43
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.43
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.43
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.43
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.42
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.42
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.42
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.42
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.42
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.42
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.42
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.42
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.41
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.41
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.41
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.41
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.41
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.41
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.4
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.4
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.4
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.4
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.4
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.4
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.4
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.39
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.39
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.39
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.39
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.39
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.38
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.38
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.38
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.38
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.38
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.37
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.37
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.37
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.37
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.37
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.37
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.37
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.36
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.36
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.36
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.36
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.36
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.36
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.36
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.36
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.35
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.35
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.35
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.35
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.34
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.33
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.33
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.33
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.33
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.32
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.32
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.32
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.31
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.31
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.31
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.31
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.3
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.29
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.29
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.28
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.28
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.28
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.28
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.28
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.27
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.27
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.27
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.27
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.27
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.26
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.26
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.26
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.25
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.25
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.25
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.25
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.24
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.24
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.22
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.21
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.21
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.2
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.2
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.2
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.2
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.19
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.19
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.18
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.17
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.17
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.16
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.15
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.15
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.14
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.13
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.13
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.13
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.12
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.12
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.11
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.11
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.1
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.1
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.1
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.1
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.09
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.09
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.09
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.09
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.09
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.07
1he7_A	126	High affinity nerve growth factor receptor; transf	99.05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.05
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.04
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.03
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.03
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.03
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.02
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.02
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.01
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	99.0
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.0
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	98.99
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	98.98
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	98.97
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.97
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	98.97
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	98.97
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	98.97
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	98.96
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	98.96
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	98.96
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	98.95
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	98.95
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	98.95
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	98.95
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	98.95
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.95
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	98.94
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.94
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	98.93
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	98.93
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	98.92
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	98.92
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	98.91
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	98.91
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	98.9
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	98.9
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	98.89
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.89
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	98.89
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	98.89
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	98.89
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	98.87
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	98.87
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	98.87
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	98.87
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	98.87
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.86
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	98.86
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	98.86
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	98.85
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	98.85
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	98.85
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	98.85
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	98.83
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	98.83
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	98.82
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	98.82
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	98.81
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	98.81
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	98.79
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	98.79
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	98.79
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	98.78
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	98.78
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	98.78
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	98.77
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	98.77
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	98.76
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	98.76
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	98.76
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	98.75
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	98.75
2ens_A	96	Advanced glycosylation END product-specific recept	98.75
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	98.74
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	98.74
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	98.74
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	98.73
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.73
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	98.73
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	98.73
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	98.73
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	98.73
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.72
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	98.72
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	98.72
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	98.71
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	98.71
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	98.7
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	98.7
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	98.7
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	98.69
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.68
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	98.67
1xt5_A	135	Variable region-containing chitin-binding protein	98.67
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	98.67
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.66
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	98.66
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	98.65
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.65
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	98.65
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	98.64
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.64
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	98.63
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	98.63
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	98.63
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	98.63
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	98.62
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	98.62
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	98.62
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	98.61
4f9p_D	254	103.2 anti-BTN3A1 antibody fragment; B7 superfamil	98.61
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	98.61
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	98.61
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	98.02
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	98.59
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.59
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.59
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	98.59
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	98.59
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	98.59
1kxv_C	121	Camelid VHH domain CAB10; beta 8 alpha 8, beta bar	98.59
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	98.58
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	98.57
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	98.57
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	98.57
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	98.56
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.56
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	98.55
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	98.55
2xt1_B	121	Camelid VHH 9; viral protein-immune system complex	98.55
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.54
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	98.54
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.54
2otu_A	115	FV light chain variable domain; antibody FV polygl	98.54
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.54
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	98.54
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	98.53
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	98.53
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	98.53
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	98.53
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.52
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.52
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.52
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	98.52
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	98.51
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	98.51
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	98.51
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	98.51
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	98.5
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	98.5
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	98.49
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	98.49
1mfa_H	120	IGG1-lambda Se155-4 FAB (heavy chain); immunoglobu	98.49
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	98.49
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	98.48
3khq_A	133	B-cell antigen receptor complex-associated protei	98.48
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.48
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	98.48
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	98.48
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	98.48
1qfo_A	119	Protein (sialoadhesin); immunoglobulin superfamily	98.47
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.47
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.47
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	98.47
4f9l_D	259	20.1 anti-BTN3A1 antibody fragment; B7 superfamily	98.47
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	98.46
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.46
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	98.46
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.45
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	98.45
2pkd_A	111	SLAM family member 5; signaling lymphocyte activat	98.45
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	98.45
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	98.45
2p45_B	123	Antibody CAB-RN05; seMet phasing, camelid single-d	98.44
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	98.44
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	98.44
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	98.44
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	98.44
2oi9_C	121	V beta, T cell receptor beta chain; TCR, MHC, immu	98.44
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	98.43
1n4x_H	120	Immunoglobulin heavy chain variable region; immune	98.43
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	98.43
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	98.43
2yc1_A	117	Single chain antibody fragment 9004G; immune syste	98.42
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.42
3cx5_J	127	Heavy chain (VH) of FV-fragment; complex III, elec	98.42
2wzp_D	123	Camelid VHH5; baseplate, viral protein; 2.60A {Lam	98.42
1lp9_E	194	T-cell receptor alpha chain; immunoregulatory comp	98.42
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	98.42
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	98.42
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.41
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	98.41
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	98.41
1a2y_B	116	IGG1-kappa D1.3 FV (heavy chain); complex (immunog	98.41
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.4
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.4
3b9v_A	120	Heavy chain variable domain; antibody engineering,	98.4
1j05_H	121	T84.66 antibody, anti-CEA MAB T84.66, heavy chain;	98.4
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.4
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.39
2h32_A	126	Immunoglobulin IOTA chain; beta sheets, V and C-ty	98.39
1sjv_A	114	R9; camelids antibody, domain swapping, heavy chai	98.39
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	98.38
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	98.38
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.37
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	98.37
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	98.37
1p4b_L	135	Antibody variable light chain; FV antibody, antige	98.36
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.36
1yc7_A	124	Anti-VSG immunoglobulin heavy chain variable domai	98.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.35
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.35
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.34
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	98.34
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.34
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	98.33
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	98.33
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	98.33
2hp4_A	114	T-cell surface glycoprotein CD8 alpha chain; CO-re	98.33
3rgv_A	200	YAE62 TCR A chain; TCR, MHC, MHC class I, immune s	98.32
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.32
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	98.32
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	98.31
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	98.31
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.31
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.31
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	98.31
1kxt_B	127	Immunoglobulin VHH fragment; alpha 8 beta 8, beta	98.31
1xed_A	117	Polymeric-immunoglobulin receptor; IG-like fold, i	98.31
1i3u_A	127	Antibody VHH LAMA domain; VHH fragment, immune sys	98.31
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.31
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.3
2x1q_A	127	Gelsolin nanobody; contractIle protein; 1.06A {Lam	98.3
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	98.29
2ptt_B	112	Natural killer cell receptor 2B4; CD244, CD48, NK	98.29
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	98.29
4ei6_A	208	Valpha1 XV19 type II natural killer T cell recept	98.29
3bdb_A	137	Novel immune-type receptor 11; immunoglobulin vari	98.29
3nn8_A	122	Engineered SCFV, heavy chain; beta barrel, antibod	98.29
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	98.28
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	98.28
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.28
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.27
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.27
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	98.27
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.26
3r8b_B	125	G5-8, enterotoxin type B; immunoglobulin-like, OB-	98.26
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	98.26
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.26
2ol3_A	142	BM3.3 T-cell receptor alpha-chain; T cell receptor	98.26
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.25
2jjs_C	127	Leukocyte surface antigen CD47; signal regulatory	98.25
1rjc_A	137	1D2L19, camelid heavy chain antibody; beta sandwic	98.25
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	98.25
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.25
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.25
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	98.24
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	98.24
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	98.24
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	98.23
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.23
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	98.23
3kg5_A	134	B-cell antigen receptor complex-associated protei	98.22
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.22
1zvy_A	136	Immunoglobulin heavy chain antibody variable DOMA;	98.22
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.22
3gsn_A	199	RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human	98.21
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.19
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.19
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.19
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	98.18
3k74_B	115	Nanobody; immunoglobulin, antibiotic resista metho	98.18
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	98.18
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	98.18
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	98.17
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.17
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	98.17

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.70  E-value=1.9e-16  Score=110.08  Aligned_cols=126  Identities=11%  Similarity=0.038  Sum_probs=84.4

Q ss_pred             HhhhccceeeEEee---cCCCccEEEEecCCCCc--------------ccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            7 VKSIFQMLSVGDFA---DDEDIPVYIWYDSYPTH--------------EAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         7 ~~~~~~~~~~~~w~---~g~p~p~~~w~k~~~~~--------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      ++.++..+.+-|..   .+.|.|.+.|||++...              ....+.+++.+...   .+..+|.|.+++.+|
T Consensus         4 ta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D   80 (203)
T 4fa8_A            4 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS---ANTFFLVVTAANISH   80 (203)
T ss_dssp             EEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEE---TTEEEEEESSCCGGG
T ss_pred             EEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEc---CCEEEEEEccCCHHH
Confidence            34567788888853   37899999999876321              11223344443221   346889999999999


Q ss_pred             CEEEEEEEEEec----------C--CC--------CCCCCCcEEEEEEeE---------E-------------------e
Q psy534           70 QGWYECKVVFLN----------R--SP--------NSHKNGTWFHLDVHG---------V-------------------F  101 (145)
Q Consensus        70 ~G~Y~C~~~~~~----------~--~~--------~~~~~g~~~~l~c~~---------~-------------------~  101 (145)
                      +|.|.|++.+..          +  ++        .....|..+.|.|..         +                   .
T Consensus        81 ~G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~  160 (203)
T 4fa8_A           81 DGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKE  160 (203)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEEC
T ss_pred             CeEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEe
Confidence            999999996532          0  11        123568999999981         0                   0


Q ss_pred             cCC--cEEEEcccCCCCCeeeEEEEecCCC-CcEEEE
Q psy534          102 NDG--TELRISNIRSQDIGDYTCLATHVLY-PDLLVV  135 (145)
Q Consensus       102 ~~~--~~L~i~~v~~~d~G~Y~C~a~n~~g-~~~~v~  135 (145)
                      .++  ..|.|.+++.+|+|.|+|.|.|.+| ++-..+
T Consensus       161 ~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v~v  197 (203)
T 4fa8_A          161 KDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGVYV  197 (203)
T ss_dssp             TTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEEEE
T ss_pred             CCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEE
Confidence            122  1234468999999999999999999 443333

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.69  E-value=1.9e-17  Score=112.24  Aligned_cols=124  Identities=16%  Similarity=0.203  Sum_probs=89.5

Q ss_pred             HHhhhccceeeEEeecCCCccEEEEecCCCCccc-----------ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEE
Q psy534            6 AVKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEA-----------EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE   74 (145)
Q Consensus         6 ~~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~-----------~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   74 (145)
                      ..+..+.++.+.|-+.+.|.+.+.|++++...+.           ..+.+|+.+.......+..+|.|.+++.+|+|.|.
T Consensus         5 v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   84 (184)
T 2ny1_B            5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   84 (184)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEEE
Confidence            3456678888899988999999999998753111           33456666532111234667999999999999999


Q ss_pred             EEEEEec-----------CCCC-CCCCCcEEEEEEeE---------Ee-------cCCcEEEEcccCCCCCeeeEEEEec
Q psy534           75 CKVVFLN-----------RSPN-SHKNGTWFHLDVHG---------VF-------NDGTELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus        75 C~~~~~~-----------~~~~-~~~~g~~~~l~c~~---------~~-------~~~~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      |.+.+..           .++. ....|+.+.|.|..         +.       .....|.|.+++.+|+|.|+|.|.|
T Consensus        85 C~~~~~~~~~~l~V~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n  164 (184)
T 2ny1_B           85 CEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQ  164 (184)
T ss_dssp             EEETTEEEEEEEEEEEEEESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEEEESSEEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEcCCCcEEEEEEEecCCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccccCceEEEEecCCcCCCeEEEEEEEE
Confidence            9984321           1222 23569999999982         11       1234899999999999999999999


Q ss_pred             CCC
Q psy534          127 VLY  129 (145)
Q Consensus       127 ~~g  129 (145)
                      ..+
T Consensus       165 ~~~  167 (184)
T 2ny1_B          165 NQK  167 (184)
T ss_dssp             TTE
T ss_pred             CCc
Confidence            877

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.69  E-value=6e-17  Score=111.25  Aligned_cols=121  Identities=22%  Similarity=0.231  Sum_probs=87.9

Q ss_pred             hhccceeeEEeecCCC----ccEEEEecC----------------CCCcc--cccccceEEEecCCCCCCeeeEEEcccC
Q psy534            9 SIFQMLSVGDFADDED----IPVYIWYDS----------------YPTHE--AEEYKGRISRVDKESPFGMASLNLTKIR   66 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p----~p~~~w~k~----------------~~~~~--~~~~~~R~~~~~~~~~~~~~sL~I~~v~   66 (145)
                      ..+.++.+.|.+.+.+    .+.+.|++.                +....  ...+.+|+.+..++...++.+|.|.+++
T Consensus        13 ~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~   92 (214)
T 3jz7_A           13 AKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQ   92 (214)
T ss_dssp             ETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEEECSCC
T ss_pred             ecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEEEccCC
Confidence            4566777778877665    468888873                21111  3467888888654444568999999999


Q ss_pred             CCCCEEEEEEEEEec----------C--CCC--------CCCCCcEEEEEEeE----------Ee---------------
Q psy534           67 ESDQGWYECKVVFLN----------R--SPN--------SHKNGTWFHLDVHG----------VF---------------  101 (145)
Q Consensus        67 ~~D~G~Y~C~~~~~~----------~--~~~--------~~~~g~~~~l~c~~----------~~---------------  101 (145)
                      .+|+|.|.|.+.+..          +  ++.        ....|..+.|.|..          +.               
T Consensus        93 ~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~  172 (214)
T 3jz7_A           93 LSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAE  172 (214)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGGGG
T ss_pred             hhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCccceec
Confidence            999999999996532          0  111        23458899999982          11               


Q ss_pred             cCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          102 NDGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       102 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..+..|.|.+++.+|+|.|+|.|.|..|
T Consensus       173 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~g  200 (214)
T 3jz7_A          173 MTSPVISVKNASSEYSGTYSCTVQNRVG  200 (214)
T ss_dssp             TTSSEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             cCCCEEEEecCCHHHCEEEEEEEEcCCC
Confidence            1235899999999999999999999998

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.68  E-value=3.4e-16  Score=105.76  Aligned_cols=115  Identities=21%  Similarity=0.252  Sum_probs=83.6

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-----
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-----   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-----   82 (145)
                      ...+.++.+.|-+.+.|.+.+.|++++.. +......|+...      .+++|.|.+++.+|+|.|+|.+.+...     
T Consensus        14 v~~G~~v~l~C~~~~~p~~~v~W~~~~~~-~~~~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~   86 (189)
T 2v5t_A           14 FKQGEDAEVVCRVSSSPAPAVSWLYHNEE-VTTISDNRFAML------ANNNLQILNINKSDEGIYRCEGRVEARGEIDF   86 (189)
T ss_dssp             EETTSCEEECCEEECSSCCEEEEEC------CBCCCTTEEEC------TTSCEEETTCCGGGCEEEEEEEEETTTTEEEE
T ss_pred             EeCCCcEEEEEEEcCCCCCEEEEEECCcc-ceeccCCeEEEe------cCCCEEEeeCCHhHCcEEEEEEEEcCCCceEE
Confidence            34567888889998999999999999754 333344566552      367899999999999999999864320     


Q ss_pred             ---------C------CC----CCCCCcEEEEEEeE---------E---------------ecCCcEEEEcccCCCCCee
Q psy534           83 ---------S------PN----SHKNGTWFHLDVHG---------V---------------FNDGTELRISNIRSQDIGD  119 (145)
Q Consensus        83 ---------~------~~----~~~~g~~~~l~c~~---------~---------------~~~~~~L~i~~v~~~d~G~  119 (145)
                               +      +.    ....|..+.|.|..         +               ...+..|.|.+++.+|+|.
T Consensus        87 ~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  166 (189)
T 2v5t_A           87 RDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGP  166 (189)
T ss_dssp             EEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEcCCChhhCee
Confidence                     1      11    13458999999981         0               1123579999999999999


Q ss_pred             eEEEEecCCC
Q psy534          120 YTCLATHVLY  129 (145)
Q Consensus       120 Y~C~a~n~~g  129 (145)
                      |+|.|.|..|
T Consensus       167 Y~C~a~n~~g  176 (189)
T 2v5t_A          167 YVCRATNKAG  176 (189)
T ss_dssp             EEEEEEETTE
T ss_pred             EEEEEEeCCC
Confidence            9999999998

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.68  E-value=8.2e-16  Score=105.59  Aligned_cols=116  Identities=21%  Similarity=0.265  Sum_probs=87.1

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCc----------------ccccccceEEEecCCCCCCeeeEEEcccCCCCCE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTH----------------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQG   71 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~----------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G   71 (145)
                      ...+.++.+.|-..+.+.+.+.||++....                ..+.+.+|+.+.      .+++|.|.+++.+|+|
T Consensus        11 v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~------~~~~L~i~~v~~~D~G   84 (208)
T 3r4d_A           11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY------SNGSLLFQMITMKDMG   84 (208)
T ss_dssp             EETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEEC------TTSCEEECSCCGGGCE
T ss_pred             eecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEe------cCCeEEEccccccCCe
Confidence            346778889998778889999999875321                122356677663      3678999999999999


Q ss_pred             EEEEEEEEec-----------C--C---C------CCCCCCcEEEEEEeE-----------------------EecCCcE
Q psy534           72 WYECKVVFLN-----------R--S---P------NSHKNGTWFHLDVHG-----------------------VFNDGTE  106 (145)
Q Consensus        72 ~Y~C~~~~~~-----------~--~---~------~~~~~g~~~~l~c~~-----------------------~~~~~~~  106 (145)
                      .|+|.+.+..           +  +   +      .....|+.+.|.|..                       ....+..
T Consensus        85 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~~~~~pp~i~W~~~g~~l~~~~~~~~~~~~~~  164 (208)
T 3r4d_A           85 VYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSI  164 (208)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEECSCTTCEEEEEETTEECCCCSSEEEETTTTE
T ss_pred             EEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEECCCCCCceEEEECCEeCCCCCCeEEcCCCCE
Confidence            9999996542           0  1   1      114568999999981                       0123368


Q ss_pred             EEEcccCCCCCeeeEEEEecCCC
Q psy534          107 LRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       107 L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      |.|.+++.+|+|.|+|.|.|.+|
T Consensus       165 L~i~~v~~~d~G~Y~C~a~N~~g  187 (208)
T 3r4d_A          165 LRIDPIKREDAGEYQCEISNPVS  187 (208)
T ss_dssp             EEESSCCGGGCEEEEEEEECTTC
T ss_pred             EEEeccCHHhCeEEEEEEecCCC
Confidence            99999999999999999999998

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.67  E-value=4.4e-16  Score=108.06  Aligned_cols=137  Identities=17%  Similarity=0.231  Sum_probs=91.0

Q ss_pred             hhhccceeeEEeecCCCc-----cEEEEecCCCCc----------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEE
Q psy534            8 KSIFQMLSVGDFADDEDI-----PVYIWYDSYPTH----------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGW   72 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~-----p~~~w~k~~~~~----------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~   72 (145)
                      +..+.++.+.|.+.+.|.     +.+.|++++...          ....+.+|+.+..+....++++|.|.+++.+|+|.
T Consensus         7 ~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~   86 (222)
T 4i0k_A            7 ALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDEGS   86 (222)
T ss_dssp             CCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGCSC
T ss_pred             EECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccCEE
Confidence            345677888888776653     788898876321          03456788887655445568999999999999999


Q ss_pred             EEEEEEEecC-----------C---C-------CCCCCCcEEEEEEeE----------Eec------------------C
Q psy534           73 YECKVVFLNR-----------S---P-------NSHKNGTWFHLDVHG----------VFN------------------D  103 (145)
Q Consensus        73 Y~C~~~~~~~-----------~---~-------~~~~~g~~~~l~c~~----------~~~------------------~  103 (145)
                      |+|.+.+...           +   +       .....|..+.|.|..          +..                  .
T Consensus        87 Y~C~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~  166 (222)
T 4i0k_A           87 YTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANER  166 (222)
T ss_dssp             EEEEEEECCCCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEECTT
T ss_pred             EEEEEEeCCCceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcCCC
Confidence            9999975321           1   1       112358899999982          000                  1


Q ss_pred             C--cEEEEcccCCCCCeeeEEEEecCCC-----CcEEEEeCeeEEecC
Q psy534          104 G--TELRISNIRSQDIGDYTCLATHVLY-----PDLLVVLGSFHIHTG  144 (145)
Q Consensus       104 ~--~~L~i~~v~~~d~G~Y~C~a~n~~g-----~~~~v~~~~~~~~~~  144 (145)
                      +  ..|.|.+++.+|+|.|+|.|.|..|     ..+.|....+.+.|.
T Consensus       167 ~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~  214 (222)
T 4i0k_A          167 GLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLTFPPE  214 (222)
T ss_dssp             SCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC--------
T ss_pred             CeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCccccCCc
Confidence            1  1278899999999999999999998     556665555655543

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.64  E-value=2.7e-15  Score=102.83  Aligned_cols=122  Identities=19%  Similarity=0.218  Sum_probs=86.3

Q ss_pred             hhhccceeeEEeecCCCcc---EEEEecCCCC---------------cccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDEDIP---VYIWYDSYPT---------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p---~~~w~k~~~~---------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      ...+.++.+-|.+.+.|.+   .+.|+|++..               .....+.+|+.+........+++|.|.+++.+|
T Consensus        11 v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D   90 (218)
T 4frw_A           11 VVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQAD   90 (218)
T ss_dssp             EETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSCCGGG
T ss_pred             EEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeeccHHH
Confidence            3457788888888877644   4789887532               123446677776555445568899999999999


Q ss_pred             CEEEEEEEEEecC-------------CC---------CCCCCCcEEEEEEeE---------Ee-------------cC--
Q psy534           70 QGWYECKVVFLNR-------------SP---------NSHKNGTWFHLDVHG---------VF-------------ND--  103 (145)
Q Consensus        70 ~G~Y~C~~~~~~~-------------~~---------~~~~~g~~~~l~c~~---------~~-------------~~--  103 (145)
                      +|.|.|.+.+...             ++         .....+..+.+.|..         +.             ..  
T Consensus        91 ~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~  170 (218)
T 4frw_A           91 EGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHSRS  170 (218)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECSSS
T ss_pred             CCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceEecCCc
Confidence            9999999854321             11         112347788888871         00             11  


Q ss_pred             ---CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 ---GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ---~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                         ...|.|.+++.+|+|.|+|.|+|..|
T Consensus       171 ~~~~s~L~i~~~~~~d~g~YtC~a~N~~g  199 (218)
T 4frw_A          171 AAVTSEFHLVPSRSMNGQPLTCVVSHPGL  199 (218)
T ss_dssp             EEEEEEEEECCCGGGTTCEEEEEEECTTC
T ss_pred             EEEEEEEEEeeCCHHhCeEEEEEEEeCCC
Confidence               12589999999999999999999998

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.64  E-value=2.1e-15  Score=102.36  Aligned_cols=117  Identities=18%  Similarity=0.212  Sum_probs=83.8

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCccccc-ccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec-----
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEE-YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN-----   81 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~-~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-----   81 (145)
                      ...+.++.+.|.+.|.|.+.+.|++++....... ...++...     .+..+|.|.+++.+|+|.|+|.+.+..     
T Consensus        17 v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~   91 (194)
T 2a38_A           17 VLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFS-----DGRAKLTIPAVTKANSGRYSLKATNGSGQATS   91 (194)
T ss_dssp             EETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEE-----TTEEEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             EECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeC-----CCEEEEEECCCCcccCEEEEEEEEcCCceEeE
Confidence            3457788899999999999999999875422211 12233221     346799999999999999999995421     


Q ss_pred             -----C-----------CCC--CCCCCcEEEEEEeE---------Eec---------------CC--cEEEEcccCCCCC
Q psy534           82 -----R-----------SPN--SHKNGTWFHLDVHG---------VFN---------------DG--TELRISNIRSQDI  117 (145)
Q Consensus        82 -----~-----------~~~--~~~~g~~~~l~c~~---------~~~---------------~~--~~L~i~~v~~~d~  117 (145)
                           +           .+.  ....|..+.|.|..         +..               ++  ..|.|.+++.+|+
T Consensus        92 ~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  171 (194)
T 2a38_A           92 TAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDS  171 (194)
T ss_dssp             EEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGC
T ss_pred             EEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcC
Confidence                 0           011  13458999999981         100               11  1689999999999


Q ss_pred             eeeEEEEecCCC
Q psy534          118 GDYTCLATHVLY  129 (145)
Q Consensus       118 G~Y~C~a~n~~g  129 (145)
                      |.|+|.|.|..|
T Consensus       172 G~Y~C~a~n~~g  183 (194)
T 2a38_A          172 GTYSVNATNSVG  183 (194)
T ss_dssp             EEEEEEEEETTE
T ss_pred             eEEEEEEEeCCC
Confidence            999999999998

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.63  E-value=6.2e-16  Score=116.06  Aligned_cols=112  Identities=18%  Similarity=0.229  Sum_probs=82.1

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC------
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR------   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~------   82 (145)
                      ..+..+.+.|.+.|.|.|.+.|++++...+..    +....     ..+++|.|.+++.+|+|.|+|.|.+...      
T Consensus       218 ~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~----~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~  288 (384)
T 3kld_A          218 EKGTTVKLECFALGNPVPTILWRRADGKPIAR----KARRH-----KSNGILEIPNFQQEDAGSYECVAENSRGKNVAKG  288 (384)
T ss_dssp             ETTSCEEEEEEEEEESCCEEEEEETTCCCCCT----TCEEC-----TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cCCCcEEEEEEEeecCCCcEEEEeCCCccccc----cceec-----CCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEE
Confidence            34667788899999999999999865432221    11111     2367899999999999999999965320      


Q ss_pred             ------C------CC--CCCCCcEEEEEEeE---------Ee-------------cCCcEEEEcccCCCCCeeeEEEEec
Q psy534           83 ------S------PN--SHKNGTWFHLDVHG---------VF-------------NDGTELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus        83 ------~------~~--~~~~g~~~~l~c~~---------~~-------------~~~~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                            +      +.  ....|..+.|.|..         +.             ..+..|.|.+++.+|+|.|+|.|.|
T Consensus       289 ~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N  368 (384)
T 3kld_A          289 QLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAEN  368 (384)
T ss_dssp             EEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEETTEEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEeCCEEEEeecChhhCEEEEEEEEe
Confidence                  1      11  13458899999981         11             1124899999999999999999999


Q ss_pred             CCC
Q psy534          127 VLY  129 (145)
Q Consensus       127 ~~g  129 (145)
                      .+|
T Consensus       369 ~~G  371 (384)
T 3kld_A          369 KHG  371 (384)
T ss_dssp             TTE
T ss_pred             CCc
Confidence            999

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.63  E-value=2.4e-15  Score=108.03  Aligned_cols=124  Identities=22%  Similarity=0.267  Sum_probs=85.8

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC------
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR------   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~------   82 (145)
                      ..+.++.+.|-+.|.|.+.+.|++++.. +......|...      ..+.+|.|.+++.+|+|.|.|.+.+...      
T Consensus       111 ~~G~~v~l~C~~~~~p~~~v~W~~~~~~-~~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~  183 (291)
T 2wim_A          111 KQGEDAEVVCRVSSSPAPAVSWLYHNEE-VTTISDNRFAM------LANNNLQILNINKSDEGIYRCEGRVEARGEIDFR  183 (291)
T ss_dssp             ETTSCEEECCCCBCSSCCEEEEECC-----CBCCCSSEEE------CTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEE
T ss_pred             cCCCCEEEEEEEccCCCCEEEEEECCcc-ccccCCceEEE------ccCCCEEEEecchhhCEEEEEEEEECCCCeeEEe
Confidence            3566778889888999999999999754 22223445554      2367899999999999999999965320      


Q ss_pred             --------CCC----------CCCCCcEEEEEEeE---------E---------------ecCCcEEEEcccCCCCCeee
Q psy534           83 --------SPN----------SHKNGTWFHLDVHG---------V---------------FNDGTELRISNIRSQDIGDY  120 (145)
Q Consensus        83 --------~~~----------~~~~g~~~~l~c~~---------~---------------~~~~~~L~i~~v~~~d~G~Y  120 (145)
                              +|.          ....|+.+.|.|..         +               ...+..|.|.+++.+|+|.|
T Consensus       184 ~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  263 (291)
T 2wim_A          184 DIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPY  263 (291)
T ss_dssp             EEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEECSTTCEEEEESCCSTTCEEE
T ss_pred             eEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEcCCccEEEEeeCCcccCEEE
Confidence                    111          13458999999981         0               11235799999999999999


Q ss_pred             EEEEecCCC-----CcEEEEeCee
Q psy534          121 TCLATHVLY-----PDLLVVLGSF  139 (145)
Q Consensus       121 ~C~a~n~~g-----~~~~v~~~~~  139 (145)
                      +|.|.|..|     ..+.|...++
T Consensus       264 ~C~a~N~~G~~~~~~~l~v~~~~~  287 (291)
T 2wim_A          264 VCRATNKAGEDEKQAFLQVFVQHH  287 (291)
T ss_dssp             EEEEEETTEEEEEEEEEEC-----
T ss_pred             EEEEEECCCceeeeEEEEEEEecc
Confidence            999999999     4555544443

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.63  E-value=4e-15  Score=102.04  Aligned_cols=120  Identities=13%  Similarity=0.155  Sum_probs=85.9

Q ss_pred             hhhccceeeEEeecCCCc-----cEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC
Q psy534            8 KSIFQMLSVGDFADDEDI-----PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~-----p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~   82 (145)
                      +..+..+.+.|-+.+.|.     +.+.|++.+..  ...+.+|+.+..+....++.+|.|.+++.+|+|.|.|.+.+...
T Consensus        14 v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~--~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~   91 (202)
T 3bp6_B           14 VDVGSSVSLECDFDRRECTELEGIRASLQKVEND--TSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAA   91 (202)
T ss_dssp             EETTSCEEEEEEECTTC---CTTEEEEEEECC----CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             EeCCCcEEEEEEecCCCCCCccceEEEEEcCCCc--ccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeCCC
Confidence            345678888999998876     89999994322  23566777775533333578999999999999999999965320


Q ss_pred             ------------CCC-------CCCCCcEEEEEEeEE---------e-------------cCC--cEEEEcccCCCCCee
Q psy534           83 ------------SPN-------SHKNGTWFHLDVHGV---------F-------------NDG--TELRISNIRSQDIGD  119 (145)
Q Consensus        83 ------------~~~-------~~~~g~~~~l~c~~~---------~-------------~~~--~~L~i~~v~~~d~G~  119 (145)
                                  ++.       ....|..+.|.|...         .             ..+  ..+.|.+++.+|+|.
T Consensus        92 ~~~~~~~l~V~~~~~~p~~~~~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~d~G~  171 (202)
T 3bp6_B           92 WDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRN  171 (202)
T ss_dssp             EEEEEEEEEEEBCCCCEEEEEEECTTTCCEEEEEEEEEBSCCEEEETTCCSCCEEEEEECTTSCEEEEEEEEECCCTTCC
T ss_pred             cceEEEEEEecCCCCcccEEEEecCCCCeEEEEEEccccCCceEEEEeCCCCccCceeeCCCCCEEEEEEEEEEcCCCCE
Confidence                        111       134689999999820         0             112  245677899999999


Q ss_pred             eEEEEecCCC
Q psy534          120 YTCLATHVLY  129 (145)
Q Consensus       120 Y~C~a~n~~g  129 (145)
                      |+|.|.|..|
T Consensus       172 Y~C~a~N~~g  181 (202)
T 3bp6_B          172 FSCMFWNAHM  181 (202)
T ss_dssp             EEEEEEETTT
T ss_pred             EEEEEEcCCc
Confidence            9999999998

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.62  E-value=1.3e-15  Score=103.75  Aligned_cols=118  Identities=14%  Similarity=0.126  Sum_probs=83.3

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec------
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN------   81 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~------   81 (145)
                      ...+.++.+.|-+.|.|.+.+.|++++.......  .+..+...  ..+..+|.|.+++.+|+|.|.|.+.+..      
T Consensus        16 v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~   91 (197)
T 2j8h_A           16 VRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG--LKYRIQEF--KGGYHQLIIASVTDDDATVYQVRATNQGGSVSGT   91 (197)
T ss_dssp             EETTSCEEEEEEEECSSCCEEEEEETTEECCCCS--SSEEEEEE--TTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEE
T ss_pred             EcCCCEEEEEEEEeecCCCEEEEEECCEECccCC--CcEEEEEc--CCCEEEEEECcCCHHhCEEEEEEEEECCCceeEE
Confidence            3456788899999999999999999875422211  23332210  1335699999999999999999996432      


Q ss_pred             ----C-------CCCC--------CCCCcEEEEEEeE---------Ee-----------------cCCcEEEEcc-cCCC
Q psy534           82 ----R-------SPNS--------HKNGTWFHLDVHG---------VF-----------------NDGTELRISN-IRSQ  115 (145)
Q Consensus        82 ----~-------~~~~--------~~~g~~~~l~c~~---------~~-----------------~~~~~L~i~~-v~~~  115 (145)
                          +       .+..        ...|..+.|.|..         +.                 .....|.|.+ ++.+
T Consensus        92 ~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~  171 (197)
T 2j8h_A           92 ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERK  171 (197)
T ss_dssp             EEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCGG
T ss_pred             EEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcc
Confidence                0       1110        2348889999981         00                 0124788889 9999


Q ss_pred             CCeeeEEEEecCCC
Q psy534          116 DIGDYTCLATHVLY  129 (145)
Q Consensus       116 d~G~Y~C~a~n~~g  129 (145)
                      |+|.|+|.|.|..|
T Consensus       172 d~G~Y~C~a~N~~g  185 (197)
T 2j8h_A          172 DAGFYVVCAKNRFG  185 (197)
T ss_dssp             GCEEEEEEEEETTE
T ss_pred             cCEeEEEEEEeCCC
Confidence            99999999999998

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.62  E-value=2.4e-15  Score=102.36  Aligned_cols=116  Identities=19%  Similarity=0.102  Sum_probs=84.5

Q ss_pred             hhhccceeeEEe-ecCCCc-cEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC---
Q psy534            8 KSIFQMLSVGDF-ADDEDI-PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR---   82 (145)
Q Consensus         8 ~~~~~~~~~~~w-~~g~p~-p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~---   82 (145)
                      ...+.++.+.|- ..+.|. +.+.|++++... ......+....     ..+++|.|.+++.+|+|.|.|.+.+...   
T Consensus        20 v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~-~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~   93 (201)
T 3s97_C           20 VKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPV-FITMDKRRFVS-----QTNGNLYIANVEASDKGNYSCFVSSPSITKS   93 (201)
T ss_dssp             EETTCCEEECCCCCSEESSCCEEEEEESSTTC-BCCCSSSEEEC-----TTTCCEEESSCCGGGCEEEEEEEEEGGGTEE
T ss_pred             EECCCCEEEeccccccCCCceEEEEEECCcee-eeeeCCCeEEE-----cCCCeEEECcCCcccCeEEEEEEEecCCCcc
Confidence            345667788888 778888 999999988542 22223333332     3378899999999999999999965220   


Q ss_pred             -------------------CC--------CCCCCCcEEEEEEeE---------E-------------ecCCcEEEEcccC
Q psy534           83 -------------------SP--------NSHKNGTWFHLDVHG---------V-------------FNDGTELRISNIR  113 (145)
Q Consensus        83 -------------------~~--------~~~~~g~~~~l~c~~---------~-------------~~~~~~L~i~~v~  113 (145)
                                         +|        .....|..+.|.|..         +             ...+..|.|.+++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~L~i~~v~  173 (201)
T 3s97_C           94 VFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQ  173 (201)
T ss_dssp             EECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEETTTTEEEECSCC
T ss_pred             hhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecCCCCEEEEccCC
Confidence                               00        012348889999981         0             1234589999999


Q ss_pred             CCCCeeeEEEEecCCC
Q psy534          114 SQDIGDYTCLATHVLY  129 (145)
Q Consensus       114 ~~d~G~Y~C~a~n~~g  129 (145)
                      .+|+|.|+|.|.|..|
T Consensus       174 ~~d~G~Y~C~a~n~~g  189 (201)
T 3s97_C          174 LEDEGIYECEAENIRG  189 (201)
T ss_dssp             GGGCEEEEEEEEETTE
T ss_pred             hhhCEEEEEEEEecCC
Confidence            9999999999999998

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.61  E-value=2.5e-15  Score=105.39  Aligned_cols=117  Identities=23%  Similarity=0.285  Sum_probs=83.6

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec------
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN------   81 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~------   81 (145)
                      ...+.++.+.|.+.|.|.+.+.|++++..........+....     ....+|.|.+++.+|+|.|+|.+.+..      
T Consensus        27 v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~  101 (241)
T 3grw_A           27 VPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR-----HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQT  101 (241)
T ss_dssp             EETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEE-----GGGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             EcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeee-----ccceEEEEEeCCcccCEEEEEEEeecCCceEEE
Confidence            345777888899999999999999987543222211222221     347789999999999999999995421      


Q ss_pred             ----C---CC----------C--CCCCCcEEEEEEeE---------Eec-----------C------------------C
Q psy534           82 ----R---SP----------N--SHKNGTWFHLDVHG---------VFN-----------D------------------G  104 (145)
Q Consensus        82 ----~---~~----------~--~~~~g~~~~l~c~~---------~~~-----------~------------------~  104 (145)
                          +   .+          .  ....|..+.|.|..         +..           .                  .
T Consensus       102 ~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  181 (241)
T 3grw_A          102 YTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEAD  181 (241)
T ss_dssp             EEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEE
T ss_pred             EEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCc
Confidence                0   01          1  12358899999982         111           1                  1


Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus       182 ~~L~i~~~~~~d~G~Y~C~a~N~~g  206 (241)
T 3grw_A          182 VRLRLANVSERDGGEYLCRATNFIG  206 (241)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             eEEEECcCCcccCcEEEEEEecCcc
Confidence            2599999999999999999999998

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.60  E-value=3.7e-15  Score=102.01  Aligned_cols=114  Identities=16%  Similarity=0.154  Sum_probs=80.8

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-----
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-----   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-----   82 (145)
                      ...+.++.+.|.+.+ +.+.+.|+|++.....   ..+...    ......+|.|.+++.+|+|.|+|.+.+...     
T Consensus        16 v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~---~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s   87 (196)
T 3p2t_A           16 ISWGNSVTIWCQGTL-EAREYRLDKEESPAPW---DRQNPL----EPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPS   87 (196)
T ss_dssp             EETTCCEEEEEECCT-TCCEEEEEETTSCSCS---EEECCC----SSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCC
T ss_pred             CCCCCcEEEEeeCCC-CCCEEEEEECCCCCcc---cccccc----cCCceEEEEeccCCcccCceEEEEEeCCCcccCCC
Confidence            345778889998888 6789999999854211   111111    113478899999999999999999865320     


Q ss_pred             ------------CC------C-CCCCCcEEEEEEeEE--------e------------------cCCcEEEEcccCCCCC
Q psy534           83 ------------SP------N-SHKNGTWFHLDVHGV--------F------------------NDGTELRISNIRSQDI  117 (145)
Q Consensus        83 ------------~~------~-~~~~g~~~~l~c~~~--------~------------------~~~~~L~i~~v~~~d~  117 (145)
                                  .+      . ....|+.++|.|...        .                  .....|.|.+++.+|+
T Consensus        88 ~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  167 (196)
T 3p2t_A           88 DPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHG  167 (196)
T ss_dssp             CCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEEEEEEEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGC
T ss_pred             ccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEecCCCCCEEEEEeCCCcccceeecccccccCcceEEEeCCCcccCC
Confidence                        00      1 124589999999821        0                  1123699999999999


Q ss_pred             eeeEEEEecCCC
Q psy534          118 GDYTCLATHVLY  129 (145)
Q Consensus       118 G~Y~C~a~n~~g  129 (145)
                      |.|+|.|.|..+
T Consensus       168 G~Y~C~a~n~~~  179 (196)
T 3p2t_A          168 GTYRCFSSHGFS  179 (196)
T ss_dssp             EEEEEEEECGGG
T ss_pred             CeEEEEEEcCCC
Confidence            999999999875

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.60  E-value=2.9e-15  Score=101.51  Aligned_cols=114  Identities=20%  Similarity=0.248  Sum_probs=84.1

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC------
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR------   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~------   82 (145)
                      ..+.++.+.|-+.|.|.+.+.|++++...  .....|..+..+     ..+|.|.+++.+|+|.|.|.+.+...      
T Consensus        20 ~~G~~v~l~C~~~~~p~~~i~W~~~~~~~--~~~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   92 (192)
T 2iep_A           20 LVEEVATFMCAVESYPQPEISWTRNKILI--KLFDTRYSIREN-----GQLLTILSVEDSDDGIYCCTANNGVGGAVESC   92 (192)
T ss_dssp             ETTSCEEEECCEEEESCCEEEEEETTEEC--CTTCTTEEEEGG-----GTEEEESSCCGGGCEEEEEEEECSSSCCEEEE
T ss_pred             eCCCcEEEEeeCCCCCCCeEEEEECCEEc--cccCccEEEcCC-----ccEEEEcCCCcccCeEEEEEEEcCCCceeEeE
Confidence            45667888898888899999999987432  123456655332     45799999999999999999965321      


Q ss_pred             -------------CCC--CCCCCcEEEEEEeE---------E--------------ecCCcEEEEcccCCCCCeeeEEEE
Q psy534           83 -------------SPN--SHKNGTWFHLDVHG---------V--------------FNDGTELRISNIRSQDIGDYTCLA  124 (145)
Q Consensus        83 -------------~~~--~~~~g~~~~l~c~~---------~--------------~~~~~~L~i~~v~~~d~G~Y~C~a  124 (145)
                                   .+.  ....|..+.|.|..         +              ......|.|.+++.+|+|.|+|.|
T Consensus        93 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  172 (192)
T 2iep_A           93 GALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVA  172 (192)
T ss_dssp             EEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCCGGGCEEEEEEE
T ss_pred             EEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCChhhCEEEEEEE
Confidence                         111  12358889999981         0              112347999999999999999999


Q ss_pred             ecCCC
Q psy534          125 THVLY  129 (145)
Q Consensus       125 ~n~~g  129 (145)
                      .|..|
T Consensus       173 ~n~~g  177 (192)
T 2iep_A          173 KNSLG  177 (192)
T ss_dssp             EETTE
T ss_pred             EcCCC
Confidence            99988

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.60  E-value=5.5e-15  Score=102.22  Aligned_cols=126  Identities=17%  Similarity=0.164  Sum_probs=85.5

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEccc-CCCCCEEEEEEEEEec-----
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKI-RESDQGWYECKVVFLN-----   81 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v-~~~D~G~Y~C~~~~~~-----   81 (145)
                      ...+.++.+.|-+.|.|.+.+.|++++.....    ++...... ......+|.|.++ +.+|+|.|+|.+.+..     
T Consensus        18 v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~----~~~~~~~~-~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~   92 (212)
T 2yd6_A           18 GVSGGVASFICQATGDPRPKIVWNKKGKKVSN----QRFEVIEF-DDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISV   92 (212)
T ss_dssp             EETTSCEEEEEEEEEESCCEEEEEETTEECCC----TTEEEEEE-GGGTEEEEEECSCCTTTTCEEEEEEEEETTEEEEE
T ss_pred             EecCCeEEEEEEEeeCCCCEEEEEECCcCCCC----CceeEEEE-cCCCceEEEEeccCCCCCCeEEEEEEEcCCCcEEE
Confidence            34567888999999999999999999754221    12221110 0123677999999 5999999999996432     


Q ss_pred             -----C------C---C------C--CCCCCcEEEEEEeE---------Ee--------------------cCCcEEEEc
Q psy534           82 -----R------S---P------N--SHKNGTWFHLDVHG---------VF--------------------NDGTELRIS  110 (145)
Q Consensus        82 -----~------~---~------~--~~~~g~~~~l~c~~---------~~--------------------~~~~~L~i~  110 (145)
                           +      +   |      .  ....|..+.|.|..         +.                    .....|.|.
T Consensus        93 ~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~  172 (212)
T 2yd6_A           93 STRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIE  172 (212)
T ss_dssp             EEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETTEEEEEEC
T ss_pred             EEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEc
Confidence                 0      0   1      0  01248899999981         00                    012578999


Q ss_pred             ccCCCCCeeeEEEEecCCC------CcEEEEeCe
Q psy534          111 NIRSQDIGDYTCLATHVLY------PDLLVVLGS  138 (145)
Q Consensus       111 ~v~~~d~G~Y~C~a~n~~g------~~~~v~~~~  138 (145)
                      +++.+|+|.|+|.|.|.+|      ..+.|....
T Consensus       173 ~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~  206 (212)
T 2yd6_A          173 QSEESDQGKYECVATNSAGTRYSAPANLYVRGTK  206 (212)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             CCCcccCEEEEEEEECCCCccccccccEEEEecc
Confidence            9999999999999999998      455554443

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.60  E-value=5.5e-15  Score=103.17  Aligned_cols=90  Identities=20%  Similarity=0.236  Sum_probs=60.4

Q ss_pred             ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-----------C-CC------CCCCCcEEEEEEeE--
Q psy534           40 EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-----------S-PN------SHKNGTWFHLDVHG--   99 (145)
Q Consensus        40 ~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-----------~-~~------~~~~g~~~~l~c~~--   99 (145)
                      ..+.+|+.........++.+|.|.+++.+|+|.|.|++.+...           . ..      ....|..+.|.|..  
T Consensus        65 ~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g  144 (226)
T 4f80_A           65 APYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTG  144 (226)
T ss_dssp             TTTTTTEEEECTTGGGTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEE
T ss_pred             ccccceEEEecccccCCeEEEEEeeCchHHCeeEEEEEECCCcEEEEEEEEeeccceecccceeeeccCCceeeEEEecc
Confidence            4567788776655556789999999999999999999965321           0 00      12348889999971  


Q ss_pred             --------Ee-----------------cCC--cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          100 --------VF-----------------NDG--TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       100 --------~~-----------------~~~--~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                              +.                 .++  ..+.+.+++.+|+|.|+|.|+|.+|
T Consensus       145 ~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g  201 (226)
T 4f80_A          145 WYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLL  201 (226)
T ss_dssp             EBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTT
T ss_pred             CCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCC
Confidence                    11                 111  1234557889999999999999998

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.60  E-value=6.8e-15  Score=105.65  Aligned_cols=114  Identities=21%  Similarity=0.274  Sum_probs=84.5

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC------
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR------   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~------   82 (145)
                      ..+.++.+.|-+.|.|.|.+.|++++... ......|...      ..+++|.|.+++.+|+|.|.|.+.+...      
T Consensus       113 ~~g~~v~l~C~~~~~p~~~v~W~~~~~~~-~~~~~~~~~~------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  185 (291)
T 1qz1_A          113 KEGEDAVIVCDVVSSLPPTIIWKHKGRDV-ILKKDVRFIV------LSNNYLQIRGIKKTDEGTYRCEGRILARGEINFK  185 (291)
T ss_dssp             ETTSCEEECCEEECSSCCEEEEEETTSCS-STTCCTTEEE------CTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEE
T ss_pred             cCCCeEEEEEEeccCCCCEEEEEECCEEc-ccCCCceEEE------ccCCcEEEccCccccCeEEEEEEEecCCCceeeE
Confidence            35667788898889999999999998542 2222334443      2367899999999999999999965320      


Q ss_pred             --------CC------C----CCCCCcEEEEEEeEE---------------e-------------cCCcEEEEcccCCCC
Q psy534           83 --------SP------N----SHKNGTWFHLDVHGV---------------F-------------NDGTELRISNIRSQD  116 (145)
Q Consensus        83 --------~~------~----~~~~g~~~~l~c~~~---------------~-------------~~~~~L~i~~v~~~d  116 (145)
                              +|      .    ....|+.+.|.|...               .             ..+..|.|.+++.+|
T Consensus       186 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  265 (291)
T 1qz1_A          186 DIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKND  265 (291)
T ss_dssp             EEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGG
T ss_pred             EEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhc
Confidence                    11      1    134599999999810               0             123479999999999


Q ss_pred             CeeeEEEEecCCC
Q psy534          117 IGDYTCLATHVLY  129 (145)
Q Consensus       117 ~G~Y~C~a~n~~g  129 (145)
                      +|.|+|.|.|..|
T Consensus       266 ~G~Y~C~a~N~~G  278 (291)
T 1qz1_A          266 EAEYVCIAENKAG  278 (291)
T ss_dssp             CEEEEEEEEETTE
T ss_pred             CEEEEEEEEeCCC
Confidence            9999999999998

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.60  E-value=2.1e-14  Score=97.27  Aligned_cols=121  Identities=19%  Similarity=0.200  Sum_probs=86.3

Q ss_pred             hhhccceeeEEeecCCC-ccEEEEec-CCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC---
Q psy534            8 KSIFQMLSVGDFADDED-IPVYIWYD-SYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR---   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p-~p~~~w~k-~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~---   82 (145)
                      ...+.++.+.|-+.+.| .+.+.|++ ++.. +. ....|+.+...  .....+|.|.+++.+|+|.|.|.+.+...   
T Consensus        14 v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~-~~-~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~   89 (191)
T 1epf_A           14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEK-LS-PNQQRISVVWN--DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQS   89 (191)
T ss_dssp             EETTCCEEEEEEECCCSCCCEEEEECTTSCE-EC-CBSSSEEEEEE--ETTEEEEEECSCCGGGCEEEEEEEEETTTEEE
T ss_pred             EcCCCCEEEEEECCCCCCCceEEEEeCCCcc-cc-CCCCeEEEEEC--CCCceEEEEccCCcccCEEEEEEEEcCCCcce
Confidence            34677888999999876 89999999 5533 22 12344544321  13478999999999999999999965420   


Q ss_pred             ----------C------CC--CCCCCcEEEEEEeEE-------------------------ecCCcEEEEcccCCCCCee
Q psy534           83 ----------S------PN--SHKNGTWFHLDVHGV-------------------------FNDGTELRISNIRSQDIGD  119 (145)
Q Consensus        83 ----------~------~~--~~~~g~~~~l~c~~~-------------------------~~~~~~L~i~~v~~~d~G~  119 (145)
                                +      +.  ....|+.+.|.|...                         ...+..|.|.+++.+|+|.
T Consensus        90 ~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  169 (191)
T 1epf_A           90 EATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGT  169 (191)
T ss_dssp             EEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEE
T ss_pred             EEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEEECCCChhhCEE
Confidence                      1      11  134689999999810                         1123379999999999999


Q ss_pred             eEEEEecCCCCcE
Q psy534          120 YTCLATHVLYPDL  132 (145)
Q Consensus       120 Y~C~a~n~~g~~~  132 (145)
                      |+|.|.|..+.++
T Consensus       170 Y~C~a~n~~~~~~  182 (191)
T 1epf_A          170 YRCEGRILARGEI  182 (191)
T ss_dssp             EEEEEEEGGGTEE
T ss_pred             EEEEEEEecceeE
Confidence            9999999986443

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.60  E-value=1.1e-14  Score=100.53  Aligned_cols=118  Identities=20%  Similarity=0.277  Sum_probs=84.8

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCC-CCCEEEEEEEEEecC----
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRE-SDQGWYECKVVFLNR----   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~-~D~G~Y~C~~~~~~~----   82 (145)
                      ...+.++.+.|-+.|.|.+.+.|++++....  ....|+.+...  ..+..+|.|.+++. +|+|.|.|.+.+...    
T Consensus        18 v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~--~~~~~~~~~~~--~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~   93 (212)
T 2yd1_A           18 VRVGGVASFYCAARGDPPPSIVWRKNGKKVS--GTQSRYTVLEQ--PGGISILRIEPVRAGRDDAPYECVAENGVGDAVS   93 (212)
T ss_dssp             EETTSCEEEEEEEECSSCCEEEEEETTEECC--TTSTTEEEEEE--TTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEE
T ss_pred             EecCCEEEEEEEEccCCCCeEEEEECCEECC--CCcceeEEEEc--CCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEE
Confidence            3467788899999999999999999875422  12344444321  12347899999999 999999999954320    


Q ss_pred             ---------C-------CC--------CCCCCcEEEEEEeE---------Ee--------------cCCcEEEEcccCCC
Q psy534           83 ---------S-------PN--------SHKNGTWFHLDVHG---------VF--------------NDGTELRISNIRSQ  115 (145)
Q Consensus        83 ---------~-------~~--------~~~~g~~~~l~c~~---------~~--------------~~~~~L~i~~v~~~  115 (145)
                               .       |.        ....|..+.|.|..         +.              ..+..|.|.+++.+
T Consensus        94 ~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  173 (212)
T 2yd1_A           94 ADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREE  173 (212)
T ss_dssp             EEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEETTEEEECSCCGG
T ss_pred             eeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccCCeEEEccCChh
Confidence                     1       10        01248899999981         00              01237999999999


Q ss_pred             CCeeeEEEEecCCC
Q psy534          116 DIGDYTCLATHVLY  129 (145)
Q Consensus       116 d~G~Y~C~a~n~~g  129 (145)
                      |+|.|+|.|.|..|
T Consensus       174 d~G~Y~C~a~N~~G  187 (212)
T 2yd1_A          174 DQGKYECVAENSMG  187 (212)
T ss_dssp             GCEEEEEEEEETTE
T ss_pred             hCEEEEEEeecCCC
Confidence            99999999999998

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.59  E-value=6.7e-15  Score=100.94  Aligned_cols=115  Identities=17%  Similarity=0.219  Sum_probs=86.3

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCc---------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTH---------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~---------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+.++.+.|-+.|.|.+.+.|++++...         +...+..|+.+.       ..+|.|.+++.+|+|.|+|.+.
T Consensus        13 v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-------~~~L~i~~v~~~D~G~Y~C~~~   85 (212)
T 1f97_A           13 VPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS-------SSGITFSSVTRKDNGEYTCMVS   85 (212)
T ss_dssp             EETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE-------TTEEEESCCCGGGCEEEEEEEE
T ss_pred             EEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee-------ceeEEEcccCcccCeEEEEEEE
Confidence            345778889999999999999999987542         123445666652       4889999999999999999997


Q ss_pred             Eec--------------CCCC--------CCCCCcEEEEEEe-E---------Ee-------------------------
Q psy534           79 FLN--------------RSPN--------SHKNGTWFHLDVH-G---------VF-------------------------  101 (145)
Q Consensus        79 ~~~--------------~~~~--------~~~~g~~~~l~c~-~---------~~-------------------------  101 (145)
                      +..              .+|.        ....|..+.|.|. .         +.                         
T Consensus        86 ~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~  165 (212)
T 1f97_A           86 EEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTID  165 (212)
T ss_dssp             ETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEEC
T ss_pred             ccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEec
Confidence            631              0111        1245889999998 1         00                         


Q ss_pred             cCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          102 NDGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       102 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .....|.|.+++.+|+|.|+|.|.|..|
T Consensus       166 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  193 (212)
T 1f97_A          166 PKSGDLIFDPVTAFDSGEYYCQAQNGYG  193 (212)
T ss_dssp             TTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             CCCceEEEEecChhhCcEEEEEEccccC
Confidence            1134699999999999999999999998

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.59  E-value=3.8e-15  Score=103.40  Aligned_cols=116  Identities=19%  Similarity=0.220  Sum_probs=81.9

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec-------
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN-------   81 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-------   81 (145)
                      ..+.++.+.|-+.|.|.+.+.|++++..........+....     .+..+|.|.+++.+|+|.|+|.+.+..       
T Consensus        32 ~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~  106 (231)
T 3ojm_B           32 PAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR-----NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY  106 (231)
T ss_dssp             ETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEE-----GGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             ccCCCEEEEEecccCCCCeEEEEECCccccccccccceeee-----cCcceEEEecCCcccCEEEEEEEecccCcccccE
Confidence            45677888898889999999999987542211111111221     336789999999999999999996431       


Q ss_pred             ---C------CC-------C--CCCCCcEEEEEEeE---------Eec----------------------------CCcE
Q psy534           82 ---R------SP-------N--SHKNGTWFHLDVHG---------VFN----------------------------DGTE  106 (145)
Q Consensus        82 ---~------~~-------~--~~~~g~~~~l~c~~---------~~~----------------------------~~~~  106 (145)
                         +      .+       .  ....|..+.|.|..         +..                            ....
T Consensus       107 ~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (231)
T 3ojm_B          107 HLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEV  186 (231)
T ss_dssp             EEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTE
T ss_pred             EEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccE
Confidence               0      01       0  02248889999981         111                            1235


Q ss_pred             EEEcccCCCCCeeeEEEEecCCC
Q psy534          107 LRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       107 L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      |.|.+++.+|+|.|+|.|.|..|
T Consensus       187 L~i~~~~~~d~G~Y~C~a~n~~g  209 (231)
T 3ojm_B          187 LALFNVTEADAGEYICKVSNYIG  209 (231)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTE
T ss_pred             EEEecCCHHHCeEEEEEEEeccc
Confidence            99999999999999999999998

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.59  E-value=1.7e-14  Score=103.32  Aligned_cols=115  Identities=23%  Similarity=0.265  Sum_probs=83.2

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC------
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR------   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~------   82 (145)
                      ..+.++.+.|-+.|.|.+.+.|++++... ......+....     .....|.|.+++.+|+|.|.|.+.+...      
T Consensus       112 ~~g~~~~l~C~~~g~p~~~v~W~~~~~~~-~~~~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  185 (284)
T 2rik_A          112 KQDEHTRYECKIGGSPEIKVLWYKDETEI-QESSKFRMSFV-----ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSST  185 (284)
T ss_dssp             ETTCCEEEEEEEESSSCCEEEEEETTEEC-CCSSSEEEEEE-----TTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             cCCceEEEEEEEeeeCCCEEEEEECCEEC-cCCCcEEEEEc-----CCEEEEEECCCCcccCEEEEEEEEcCCCceeEEE
Confidence            45667788899999999999999997532 22222223322     2378899999999999999999965321      


Q ss_pred             ------CC------C--CCCCCcEEEEEEeE---------Eec-----------------CCcEEEEcccCCCCCeeeEE
Q psy534           83 ------SP------N--SHKNGTWFHLDVHG---------VFN-----------------DGTELRISNIRSQDIGDYTC  122 (145)
Q Consensus        83 ------~~------~--~~~~g~~~~l~c~~---------~~~-----------------~~~~L~i~~v~~~d~G~Y~C  122 (145)
                            +|      .  ....|..+.|.|..         +..                 ....|.|.+++.+|+|.|+|
T Consensus       186 ~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  265 (284)
T 2rik_A          186 SLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQC  265 (284)
T ss_dssp             EEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             EEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEE
Confidence                  11      1  12458899999981         000                 01368899999999999999


Q ss_pred             EEecCCC
Q psy534          123 LATHVLY  129 (145)
Q Consensus       123 ~a~n~~g  129 (145)
                      .|.|..|
T Consensus       266 ~a~N~~G  272 (284)
T 2rik_A          266 KASNDVG  272 (284)
T ss_dssp             EEEETTE
T ss_pred             EEEeCCC
Confidence            9999998

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.59  E-value=2.9e-15  Score=102.55  Aligned_cols=115  Identities=18%  Similarity=0.242  Sum_probs=85.5

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCc---------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTH---------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~---------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+.++.+.|.+.|.|.+.+.|++++...         ....+.+|+.+.       ..+|.|.+++.+|+|.|+|.+.
T Consensus        16 v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-------~~~L~i~~~~~~d~G~Y~C~~~   88 (209)
T 1nbq_A           16 IPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL-------PTGITFKSVTREDTGTYTCMVS   88 (209)
T ss_dssp             EETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE-------TTEEECSCCCTTSCSEEEEEEE
T ss_pred             EEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEee-------ccEEEEeeCCHHHCcEEEEEEe
Confidence            345778888999999999999999987541         122344555542       4889999999999999999997


Q ss_pred             EecC--------------CCC--------CCCCCcEEEEEEeE----------Ee------------------------c
Q psy534           79 FLNR--------------SPN--------SHKNGTWFHLDVHG----------VF------------------------N  102 (145)
Q Consensus        79 ~~~~--------------~~~--------~~~~g~~~~l~c~~----------~~------------------------~  102 (145)
                      +...              +|.        ....|+.+.|.|..          +.                        .
T Consensus        89 ~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (209)
T 1nbq_A           89 EEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNP  168 (209)
T ss_dssp             ETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCT
T ss_pred             cCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcC
Confidence            6310              111        12348899999971          00                        0


Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ....|.|.+++.+|+|.|+|.|.|..|
T Consensus       169 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g  195 (209)
T 1nbq_A          169 TTGELVFDPLSASDTGEYSCEARNGYG  195 (209)
T ss_dssp             TTCCEEESSCCGGGCCCEEEEEECSSS
T ss_pred             CcceEEEEeccccCCeEEEEEEeCCcC
Confidence            234799999999999999999999998

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.58  E-value=1.6e-14  Score=99.05  Aligned_cols=116  Identities=17%  Similarity=0.183  Sum_probs=77.8

Q ss_pred             hhccceeeEEeecC-CCccEEEEecCCCCc---------------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEE
Q psy534            9 SIFQMLSVGDFADD-EDIPVYIWYDSYPTH---------------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGW   72 (145)
Q Consensus         9 ~~~~~~~~~~w~~g-~p~p~~~w~k~~~~~---------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~   72 (145)
                      ..+..+.+-|-+.+ .+.+.+.|++++...               .++.|.+|+.+.      .+++|.|.+++.+|+|.
T Consensus        11 ~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~------~~~sL~I~~v~~~D~G~   84 (193)
T 2if7_A           11 ILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT------QSYSLQLSNLKMEDTGS   84 (193)
T ss_dssp             ETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC------TTCCEEECSCCGGGCEE
T ss_pred             EecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC------CCeEEEECCCCcccCce
Confidence            45666777777764 456788898874211               123356788773      37999999999999999


Q ss_pred             EEEEEEEec----------C--CC---------CCCCCCc-EEEEEEeEE----------------ecCCcEEEEcccCC
Q psy534           73 YECKVVFLN----------R--SP---------NSHKNGT-WFHLDVHGV----------------FNDGTELRISNIRS  114 (145)
Q Consensus        73 Y~C~~~~~~----------~--~~---------~~~~~g~-~~~l~c~~~----------------~~~~~~L~i~~v~~  114 (145)
                      |.|++.+..          +  ++         .....|. .+.|.|...                ...+..|.|.....
T Consensus        85 Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~~~l~i~~~~~  164 (193)
T 2if7_A           85 YRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPR  164 (193)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEESCCTTCEEEEEETTEEEESSSEEEEEECTT
T ss_pred             EEEEEEecCCCeEEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCCCCeEEEEeccC
Confidence            999995421          1  11         0112354 899999821                12234677765555


Q ss_pred             C-CCeeeEEEEecCCCC
Q psy534          115 Q-DIGDYTCLATHVLYP  130 (145)
Q Consensus       115 ~-d~G~Y~C~a~n~~g~  130 (145)
                      + |+|.|+|.|.|.+|.
T Consensus       165 ~~d~G~Y~C~a~N~~g~  181 (193)
T 2if7_A          165 ISSEQDYTCIAENAVSN  181 (193)
T ss_dssp             TCSCCEEEEEEEETTEE
T ss_pred             cCCCCcEEEEEECCCCc
Confidence            4 899999999999983

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.58  E-value=1.3e-14  Score=99.76  Aligned_cols=109  Identities=14%  Similarity=0.152  Sum_probs=75.6

Q ss_pred             eeEEeecC-CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-----------
Q psy534           15 SVGDFADD-EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-----------   82 (145)
Q Consensus        15 ~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-----------   82 (145)
                      .+.|-..| .|.+.+.|++++.. +..  ..|..+...   ....+|.|.+++.+|+|.|+|.+.+...           
T Consensus        21 ~l~C~~~~~~p~~~i~W~~~g~~-i~~--~~~~~~~~~---~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~   94 (212)
T 2r15_A           21 QLYSFVTYYVEDLKVNWSHNGSA-IRY--SDRVKTGVT---GEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ   94 (212)
T ss_dssp             EEEEEBSSCCSSCEEEEEETTEE-CCC--CSSEEEEEE---TTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred             EEEEEEeccCCCceEEEEECCEE-ccC--CCeEEEEEe---CCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEe
Confidence            44455555 46899999999753 222  244443221   2356799999999999999999965220           


Q ss_pred             ----------------------------CCC--CCCCCcEEEEEEeE---------E------ecC----------C--c
Q psy534           83 ----------------------------SPN--SHKNGTWFHLDVHG---------V------FND----------G--T  105 (145)
Q Consensus        83 ----------------------------~~~--~~~~g~~~~l~c~~---------~------~~~----------~--~  105 (145)
                                                  .+.  ....|+.+.|.|..         +      ...          +  .
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~  174 (212)
T 2r15_A           95 AYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTA  174 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEE
T ss_pred             eccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEE
Confidence                                        011  12458899999981         0      000          1  2


Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|+|.|.|..|
T Consensus       175 ~L~i~~~~~~d~G~Y~C~a~N~~g  198 (212)
T 2r15_A          175 YFTINGVSTADSGKYGLVVKNKYG  198 (212)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEcCcchHHCeEEEEEEEcCCC
Confidence            799999999999999999999998

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.57  E-value=1.4e-15  Score=103.85  Aligned_cols=113  Identities=16%  Similarity=0.159  Sum_probs=81.5

Q ss_pred             HHHhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcc-cCCCCCEEEEEEEEEecC-
Q psy534            5 FAVKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTK-IRESDQGWYECKVVFLNR-   82 (145)
Q Consensus         5 ~~~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~-v~~~D~G~Y~C~~~~~~~-   82 (145)
                      |++...+.++.+.|-+.| +.+ +.|+|++... ..              ..+.+|.|.+ ++.+|+|.|.|.+.+... 
T Consensus         8 ~~v~~~G~~v~L~C~~~~-~~~-i~W~k~g~~l-~~--------------~~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~   70 (186)
T 1jbj_A            8 YKVSISGTSVELTCPLDS-DEN-LKWEKNGQEL-PQ--------------KHDKHLVLQDFSEVEDSGYYVCYTPASNKN   70 (186)
T ss_dssp             CEEEEETTEEEEECSSCC-CTT-CEEEETTEEE-CS--------------CCCSEEEEESCCTTTSCEEEEEECSSCCCC
T ss_pred             EEEEeCCcEEEEEEeCCC-CCc-eEEEECCEEC-CC--------------CCCCEEEECCCCccccCEEEEEEEEeCCCc
Confidence            444556788889998887 444 9999987431 10              1266899999 999999999999854310 


Q ss_pred             -------------CCC-------------------------------CCCCCcEEEEEEeE------Ee----------c
Q psy534           83 -------------SPN-------------------------------SHKNGTWFHLDVHG------VF----------N  102 (145)
Q Consensus        83 -------------~~~-------------------------------~~~~g~~~~l~c~~------~~----------~  102 (145)
                                   ++.                               ....|..+.|.|..      +.          .
T Consensus        71 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~p~p~i~W~k~g~~i~~~~~  150 (186)
T 1jbj_A           71 TYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNA  150 (186)
T ss_dssp             CCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSSSCSCEEEEETTEECCCSSC
T ss_pred             EEEEEEEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeCCCCeEEEEECCEECcccCC
Confidence                         110                               01268899999971      11          1


Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCCCcEEE
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLYPDLLV  134 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~v  134 (145)
                      .+..|.|.+++.+|+|.|+|.|.|..|..+.|
T Consensus       151 ~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~l~V  182 (186)
T 1jbj_A          151 TKNTWNLGNNAKDPRGTYQCQGAKETSNPLQV  182 (186)
T ss_dssp             CSSCCEEEETTSCCEEEEEEEESSCEEEEEEE
T ss_pred             CcceEEECCCCcCcCEEEEEEEEcCcCCcEEE
Confidence            34579999999999999999999999855443

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.57  E-value=5.5e-15  Score=102.41  Aligned_cols=106  Identities=16%  Similarity=0.204  Sum_probs=78.7

Q ss_pred             hhhccceeeEEeecCCCccE-EEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC----
Q psy534            8 KSIFQMLSVGDFADDEDIPV-YIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR----   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~-~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~----   82 (145)
                      ...+.++.+.|.+.|.|.+. +.|++++..           +.     ....+|.|.+++.+|+|.|+|.+.+...    
T Consensus        19 v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~-----------l~-----~~~~~L~i~~v~~~D~G~Y~C~a~n~~~s~~~   82 (204)
T 3sgj_C           19 VLEKDSVTLKCQGAYSPEDQSTQWFHNESL-----------IS-----SQASSYFIDAATVDDSGEYRCQTQLSTLSDPV   82 (204)
T ss_dssp             EETTCCEEEEEECCSSSSCCCEEEEETTEE-----------ES-----CCSSEEEESSCCGGGCEEEEEEETTSBCCCCE
T ss_pred             EECCCCEEEEEcCCCCCCCcEEEEEECCEE-----------cc-----cCccEEEEecccccCCEEEEEEeCCCcccccE
Confidence            34567888899999988776 999998743           10     1248899999999999999999843211    


Q ss_pred             ------------CCC-CCCCCcEEEEEEeE----------E---------ecCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534           83 ------------SPN-SHKNGTWFHLDVHG----------V---------FNDGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus        83 ------------~~~-~~~~g~~~~l~c~~----------~---------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                                  .+. ....|+.+.|.|..          .         ...+..|.|.+++.+|+|.|+|.|.|..+
T Consensus        83 ~l~V~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  161 (204)
T 3sgj_C           83 QLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSK  161 (204)
T ss_dssp             EEEEECSSEEEECSCSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEecCceEecCCceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecccCCceEEECcCCcccCEEEEEEEEeCCC
Confidence                        111 12359999999982          0         11234799999999999999999999543

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.57  E-value=4.5e-15  Score=104.47  Aligned_cols=118  Identities=18%  Similarity=0.231  Sum_probs=85.3

Q ss_pred             hhhccceeeEEeecC---CCccEEEEecCCCCc---------------------------ccccccceEEEecCCCCCCe
Q psy534            8 KSIFQMLSVGDFADD---EDIPVYIWYDSYPTH---------------------------EAEEYKGRISRVDKESPFGM   57 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g---~p~p~~~w~k~~~~~---------------------------~~~~~~~R~~~~~~~~~~~~   57 (145)
                      ...+.++.+.|-+.+   .|.+.+.|++++...                           ....+.+|+.+..    .++
T Consensus        14 v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~   89 (250)
T 2fbo_J           14 VHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN----LAA   89 (250)
T ss_dssp             ECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC----TTS
T ss_pred             EecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc----CCc
Confidence            345677888888876   788999999886331                           1144677777632    246


Q ss_pred             eeEEEcccCCCCCEEEEEEEEEec---------------C--C---CCC---------CCCCcEEEEEEeEE--------
Q psy534           58 ASLNLTKIRESDQGWYECKVVFLN---------------R--S---PNS---------HKNGTWFHLDVHGV--------  100 (145)
Q Consensus        58 ~sL~I~~v~~~D~G~Y~C~~~~~~---------------~--~---~~~---------~~~g~~~~l~c~~~--------  100 (145)
                      .+|.|.+++.+|+|.|.|.+.+..               +  +   +..         ...|..+.|.|...        
T Consensus        90 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~  169 (250)
T 2fbo_J           90 PTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVT  169 (250)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEEE
T ss_pred             ceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCeeE
Confidence            789999999999999999996521               0  1   110         12488999999810        


Q ss_pred             -e------c--------------------------------CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          101 -F------N--------------------------------DGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       101 -~------~--------------------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                       .      .                                ....|.|.+++.+|+|.|+|.|.|.+|
T Consensus       170 W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g  237 (250)
T 2fbo_J          170 WYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQG  237 (250)
T ss_dssp             EEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSS
T ss_pred             EEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCcc
Confidence             0      0                                124899999999999999999999776

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.57  E-value=3.4e-14  Score=101.76  Aligned_cols=115  Identities=17%  Similarity=0.210  Sum_probs=84.2

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec-------
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN-------   81 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-------   81 (145)
                      ..+.++.+.|-+.|.|.+.+.|++++.. +...-+.++...     ....+|.|.+++.+|+|.|+|.+.+..       
T Consensus        18 ~~G~~v~l~C~~~g~p~~~v~W~~~~~~-~~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~   91 (284)
T 2rik_A           18 ALGESGTFKCHVTGTAPIKITWAKDNRE-IRPGGNYKMTLV-----ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSA   91 (284)
T ss_dssp             ETTCCEEEEEEEESSSCCEEEEEETTEE-CCSSSSEEEEEE-----TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cCCCcEEEEEEEEcCCCCEEEEEECCEE-CcCCCcEEEEEc-----CCEEEEEEecCCcccCEEEEEEEEECCceEEEEE
Confidence            4567888999999999999999999753 222222233332     237899999999999999999996532       


Q ss_pred             ---C--CC------C---CCCCCcEEEEEEeE---------Ee-----------------cCCcEEEEcccCCCCCeeeE
Q psy534           82 ---R--SP------N---SHKNGTWFHLDVHG---------VF-----------------NDGTELRISNIRSQDIGDYT  121 (145)
Q Consensus        82 ---~--~~------~---~~~~g~~~~l~c~~---------~~-----------------~~~~~L~i~~v~~~d~G~Y~  121 (145)
                         +  +|      .   ....|+.+.|.|..         +.                 .....|.|.+++.+|+|.|+
T Consensus        92 ~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  171 (284)
T 2rik_A           92 QLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYT  171 (284)
T ss_dssp             EEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred             EEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEE
Confidence               0  11      1   12458899999981         00                 11236899999999999999


Q ss_pred             EEEecCCC
Q psy534          122 CLATHVLY  129 (145)
Q Consensus       122 C~a~n~~g  129 (145)
                      |.|.|..|
T Consensus       172 C~a~n~~g  179 (284)
T 2rik_A          172 CEAHNAAG  179 (284)
T ss_dssp             EEEECSSC
T ss_pred             EEEEcCCC
Confidence            99999988

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.57  E-value=1.3e-14  Score=100.57  Aligned_cols=137  Identities=12%  Similarity=0.136  Sum_probs=85.9

Q ss_pred             hhhccceeeEEeecCCC-----ccEEEEecCCC------------CcccccccceEEEecCCCCCCeeeEEEcccCCCCC
Q psy534            8 KSIFQMLSVGDFADDED-----IPVYIWYDSYP------------THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQ   70 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p-----~p~~~w~k~~~------------~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   70 (145)
                      +..+..+.+.|.+.|.|     .+.+.|++++.            ......+.+|+.+..+....++.+|.|.+++.+|+
T Consensus        13 ~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~   92 (222)
T 3sbw_C           13 VEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDA   92 (222)
T ss_dssp             EETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCCGGGC
T ss_pred             EEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcccccC
Confidence            34577788889987766     34899998641            11224567888875433344578999999999999


Q ss_pred             EEEEEEEEEec---------C--CCC--------CCCCCcEEEEEEeE---------EecC-C----------------c
Q psy534           71 GWYECKVVFLN---------R--SPN--------SHKNGTWFHLDVHG---------VFND-G----------------T  105 (145)
Q Consensus        71 G~Y~C~~~~~~---------~--~~~--------~~~~g~~~~l~c~~---------~~~~-~----------------~  105 (145)
                      |.|.|.+.+..         +  ++.        ....|..+.|.|..         +..+ +                .
T Consensus        93 G~Y~C~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~  172 (222)
T 3sbw_C           93 GVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEK  172 (222)
T ss_dssp             EEEEEEEESSSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC----
T ss_pred             eEEEEEEEeCCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceEEEcCCCC
Confidence            99999997511         0  111        12458899999982         1111 1                0


Q ss_pred             EE---EEcccCCCCCeeeEEEEecCCC-----CcEEEEeCeeEEecC
Q psy534          106 EL---RISNIRSQDIGDYTCLATHVLY-----PDLLVVLGSFHIHTG  144 (145)
Q Consensus       106 ~L---~i~~v~~~d~G~Y~C~a~n~~g-----~~~~v~~~~~~~~~~  144 (145)
                      .+   .+..++.+|+|.|+|.|.|..|     ..+.|....+...|+
T Consensus       173 ~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~p~  219 (222)
T 3sbw_C          173 LFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPN  219 (222)
T ss_dssp             CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC-------
T ss_pred             CEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCcccCCCC
Confidence            11   2224667899999999999998     344444444544443

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.57  E-value=2.7e-14  Score=96.95  Aligned_cols=108  Identities=22%  Similarity=0.325  Sum_probs=79.6

Q ss_pred             ccceeeEEeecCCCc--cEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec-------
Q psy534           11 FQMLSVGDFADDEDI--PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN-------   81 (145)
Q Consensus        11 ~~~~~~~~w~~g~p~--p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-------   81 (145)
                      +.++.+.|-+.+.|.  +.+.|++++.....    ++.       ...+.+|.|.+++.+|+|.|.|.+.+..       
T Consensus        18 G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~----~~~-------~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~   86 (190)
T 2wv3_A           18 LLPVTLQCNLTSSSHTLMYSYWTKNGVELTA----TRK-------NASNMEYRINKPRAEDSGEYHCVYHFVSAPKANAT   86 (190)
T ss_dssp             SSCEEEEEEEEECSSCEEEEEEEETTEECTT----CCB-------CCSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CceEEEEEEeccCCCCceEEEEEECCEECcc----cce-------EeccEEEEEecCCcccCEEEEEEEEeCCcccccEE
Confidence            778899999988776  88999998753211    111       1247899999999999999999996531       


Q ss_pred             ----CCCC--------CCCCCcEEEEEEeE---------Eec--CC--------------------cEEEEcccC-CCCC
Q psy534           82 ----RSPN--------SHKNGTWFHLDVHG---------VFN--DG--------------------TELRISNIR-SQDI  117 (145)
Q Consensus        82 ----~~~~--------~~~~g~~~~l~c~~---------~~~--~~--------------------~~L~i~~v~-~~d~  117 (145)
                          .+|.        ....|..+.|.|..         +..  ++                    ..|.|.+++ .+|+
T Consensus        87 l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~  166 (190)
T 2wv3_A           87 IEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDP  166 (190)
T ss_dssp             EEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSC
T ss_pred             EEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCC
Confidence                0111        12458899999981         111  10                    169999999 7999


Q ss_pred             eeeEEEEecCCC
Q psy534          118 GDYTCLATHVLY  129 (145)
Q Consensus       118 G~Y~C~a~n~~g  129 (145)
                      |.|+|.|.|..|
T Consensus       167 G~Y~C~a~N~~g  178 (190)
T 2wv3_A          167 GEYECNATNSIG  178 (190)
T ss_dssp             EEEEEEEECSSC
T ss_pred             EEEEEEEEecCC
Confidence            999999999999

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.56  E-value=3.7e-14  Score=111.52  Aligned_cols=115  Identities=23%  Similarity=0.300  Sum_probs=83.3

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC------
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR------   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~------   82 (145)
                      ..+..+.+.|-+.|.|.|.+.|+|++... ...-+.++...     .....|.|.+++.+|+|.|.|.|.+...      
T Consensus       304 ~~g~~~~l~C~~~g~P~p~v~W~k~~~~l-~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~  377 (570)
T 3b43_A          304 KQDEHTRYECKIGGSPEIKVLWYKDETEI-QESSKFRMSFV-----ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSST  377 (570)
T ss_dssp             ESSCEEEEEEEEESSSSCEEEEEETTEEC-CCSSSEEEEEE-----TTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEE
T ss_pred             cCCCcEEEEEEEeeCCCCEEEEeECCEEC-CCCCcEEEEEE-----CCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEE
Confidence            34566778899999999999999998542 22222233332     2367899999999999999999976421      


Q ss_pred             ------CC------C--CCCCCcEEEEEEeE---------Eec---------------CC--cEEEEcccCCCCCeeeEE
Q psy534           83 ------SP------N--SHKNGTWFHLDVHG---------VFN---------------DG--TELRISNIRSQDIGDYTC  122 (145)
Q Consensus        83 ------~~------~--~~~~g~~~~l~c~~---------~~~---------------~~--~~L~i~~v~~~d~G~Y~C  122 (145)
                            +|      .  ....|..+.|.|..         +..               .+  ..|.|.+++.+|+|.|+|
T Consensus       378 ~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C  457 (570)
T 3b43_A          378 SLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQC  457 (570)
T ss_dssp             EECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             EEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEE
Confidence                  11      1  12458999999981         110               11  368899999999999999


Q ss_pred             EEecCCC
Q psy534          123 LATHVLY  129 (145)
Q Consensus       123 ~a~n~~g  129 (145)
                      .|.|.+|
T Consensus       458 ~A~N~~G  464 (570)
T 3b43_A          458 KASNDVG  464 (570)
T ss_dssp             EEECSSC
T ss_pred             EEEECCC
Confidence            9999999

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.56  E-value=9.9e-15  Score=103.90  Aligned_cols=121  Identities=17%  Similarity=0.296  Sum_probs=87.0

Q ss_pred             hhhccceeeEEeec---CCCccEEEEecCCCC---------------cccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFAD---DEDIPVYIWYDSYPT---------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~---g~p~p~~~w~k~~~~---------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      ...+.++.+.|-+.   +.+.+.+.|+++...               .....|++|+.+.. +...++++|.|.+++.+|
T Consensus        17 v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~L~I~~v~~~D   95 (268)
T 3mj6_A           17 VHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVG-DTFHNDGSLLLQDVQKAD   95 (268)
T ss_dssp             EETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECS-CTTTTBCCEEECSCCGGG
T ss_pred             EecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEee-cCCCCEEEEEECCCCHhH
Confidence            34567778888877   778888999886532               12244567887643 234567999999999999


Q ss_pred             CEEEEEEEEEecC---------------CCC--CCCCCcEEEEEEeE------------Ee-------------------
Q psy534           70 QGWYECKVVFLNR---------------SPN--SHKNGTWFHLDVHG------------VF-------------------  101 (145)
Q Consensus        70 ~G~Y~C~~~~~~~---------------~~~--~~~~g~~~~l~c~~------------~~-------------------  101 (145)
                      +|.|+|.+.+...               .+.  ....|+.+.|.|..            +.                   
T Consensus        96 ~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~  175 (268)
T 3mj6_A           96 EGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNM  175 (268)
T ss_dssp             CEEEEEEEEETTCCCEEEEEEEEEEECCCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTS
T ss_pred             CEEEEEEEEecCCcceEEEEEEEEEeccCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCC
Confidence            9999999965321               111  12458888898872            11                   


Q ss_pred             ----------------------cCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          102 ----------------------NDGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       102 ----------------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                                            .....|.|.+++.+|+|.|+|.|.|..|
T Consensus       176 ~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g  225 (268)
T 3mj6_A          176 RSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKL  225 (268)
T ss_dssp             SSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCc
Confidence                                  1134799999999999999999999887

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.56  E-value=1.6e-14  Score=100.50  Aligned_cols=116  Identities=15%  Similarity=0.104  Sum_probs=79.8

Q ss_pred             hccceeeEEeec-CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC------
Q psy534           10 IFQMLSVGDFAD-DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR------   82 (145)
Q Consensus        10 ~~~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~------   82 (145)
                      .+..+.+.|-.. +.|.|.+.|++++.. +...-+.++..   +...+..+|.|.+++.+|+|.|+|.+.+...      
T Consensus        16 eg~~v~l~c~~~~~~P~p~i~W~kng~~-l~~~~~~~~~~---~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng~a~~~~~~   91 (207)
T 3rbs_A           16 EKGQVRFWMQAEKLSGNAKVNYIFNEKE-IFEGPKYKMHI---DRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTV   91 (207)
T ss_dssp             GGGCEEEEEECSCCCSCCEEEEEETTEE-ECSSSSCEEEE---CTTTCEEEEEESCCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             eCCeEEEEEEEecCCCCCEEEEEECCEE-CccCCCEEEEE---eCCCCEEEEEECCCChhhCEEEEEEEECCCeEEEEEE
Confidence            445666777765 579999999999864 32222223332   1123456899999999999999997754110      


Q ss_pred             -------------------------CCC-------CCCCCcEEEEEEeE----------Ee--------------cCC-c
Q psy534           83 -------------------------SPN-------SHKNGTWFHLDVHG----------VF--------------NDG-T  105 (145)
Q Consensus        83 -------------------------~~~-------~~~~g~~~~l~c~~----------~~--------------~~~-~  105 (145)
                                               +|.       ....|..+.|.|..          ++              ..+ .
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~~~~~~~  171 (207)
T 3rbs_A           92 VLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGIC  171 (207)
T ss_dssp             EECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCCCCSSEEE
T ss_pred             EEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCceEcCCCEE
Confidence                                     110       12358899999981          00              111 2


Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|+|.|.|.+|
T Consensus       172 ~L~I~~v~~~D~G~Y~C~a~N~~G  195 (207)
T 3rbs_A          172 TLLITEFSKKDAGIYEVILKDDRG  195 (207)
T ss_dssp             EEEETTCCGGGCEEEEEEEEETTE
T ss_pred             EEEECCCCcccCEEEEEEEEcCCC
Confidence            599999999999999999999999

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.56  E-value=4.8e-15  Score=99.84  Aligned_cols=106  Identities=16%  Similarity=0.209  Sum_probs=78.5

Q ss_pred             hhhccceeeEEeecCCCccE-EEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC----
Q psy534            8 KSIFQMLSVGDFADDEDIPV-YIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR----   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~-~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~----   82 (145)
                      ...+.++.+.|-+.+.|.+. +.|++++...           .     ....+|.|.+++.+|+|.|.|.+.+...    
T Consensus        19 v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~-----------~-----~~~~~L~i~~~~~~d~G~Y~C~~~n~~~s~~~   82 (175)
T 1fnl_A           19 VLEKDSVTLKCQGAYSPEDNSTQWFHNESLI-----------S-----SQASSYFIDAATVNDSGEYRCQTNLSTLSDPV   82 (175)
T ss_dssp             EETTCCEEEEEECCCBTTBCCCEEEETTEEE-----------E-----SSCSEEEESSCCGGGCEEEEEECSSSCCCCCE
T ss_pred             eeCCCcEEEEeeCCCCCCCcceEEEECCEEc-----------c-----CCceEEEEeCCCcccCEEEEEEeeCCcccccE
Confidence            34566788889988887776 7899987431           1     2377999999999999999999853211    


Q ss_pred             ------------CCC-CCCCCcEEEEEEeE----------E---------ecCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534           83 ------------SPN-SHKNGTWFHLDVHG----------V---------FNDGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus        83 ------------~~~-~~~~g~~~~l~c~~----------~---------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                                  .+. ....|+.+.|.|..          +         ...+..|.|.+++.+|+|.|+|.|.|..+
T Consensus        83 ~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  161 (175)
T 1fnl_A           83 QLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSK  161 (175)
T ss_dssp             EEEEECSSEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEeCCCceeeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCCCCCCEEEEcccChhhCeEEEEEEEcCCC
Confidence                        111 12358999999971          1         11234799999999999999999999765

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.56  E-value=2.7e-15  Score=101.72  Aligned_cols=115  Identities=12%  Similarity=0.101  Sum_probs=75.0

Q ss_pred             hhccceeeEEeec--CCCccEEEEecCCCCcc-------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFAD--DEDIPVYIWYDSYPTHE-------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~--g~p~p~~~w~k~~~~~~-------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.++.+-|...  +.+.+.+.|+|++....       .....+|..+.      .+++|.|.+++.+|+|.|.|.+.+
T Consensus         9 ~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~------~~gsL~I~~v~~~D~G~Y~C~~~n   82 (176)
T 1hng_A            9 ALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL------ANGDLKIKNLTRDDSGTYNVTVYS   82 (176)
T ss_dssp             ETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC------TTSCEEESSCCGGGCEEEEEEEEE
T ss_pred             EcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEEC------CCCcEEEcccccccCEEEEEEEEe
Confidence            3455666666332  25677888988863211       01124566662      367799999999999999999965


Q ss_pred             ecC--------------CC-CC--CCCCcEEEEEEeE---------EecCC------cEEEEcccCCCCCeeeEEEEecC
Q psy534           80 LNR--------------SP-NS--HKNGTWFHLDVHG---------VFNDG------TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus        80 ~~~--------------~~-~~--~~~g~~~~l~c~~---------~~~~~------~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ...              ++ .+  ...+..+.|.|..         +..++      ..+.|..++.+|+|.|+|.|.|.
T Consensus        83 ~~g~~~~~~~~~l~V~~~~~~p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~~~i~~~~~~d~G~Y~C~a~N~  162 (176)
T 1hng_A           83 TNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNR  162 (176)
T ss_dssp             TTCCEEEEEEEEEEEECCCCCCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESSSEEEEECSCCSSCEEEEEEET
T ss_pred             CCCCEEEEEEEEEEEeCCCCCCEEEecCCcEEEEEEecCCCCcEEEEEECCEECCCCCcEEEEEEEccCCeEEEEEEEec
Confidence            321              11 11  1224458899971         12222      13567788999999999999999


Q ss_pred             CC
Q psy534          128 LY  129 (145)
Q Consensus       128 ~g  129 (145)
                      +|
T Consensus       163 ~g  164 (176)
T 1hng_A          163 VS  164 (176)
T ss_dssp             TE
T ss_pred             CC
Confidence            98

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.56  E-value=1.7e-14  Score=97.98  Aligned_cols=105  Identities=13%  Similarity=0.190  Sum_probs=78.7

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec------
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN------   81 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~------   81 (145)
                      ...+.++.+.|.+.+ +.+.+.|+|++..          ..      ....+|.|.+++.+|+|.|+|.+.+..      
T Consensus        19 v~~G~~v~L~C~~~~-~~~~~~W~k~g~~----------~~------~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s   81 (184)
T 2gi7_A           19 VPLEKPVTLRCQGPP-GVDLYRLEKLSSS----------RY------QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPS   81 (184)
T ss_dssp             EETTCCEEEEEECST-TCSEEEEEETTTC----------CE------ESSSEEEESSCCGGGCEEEEEEEEETTEEBCCC
T ss_pred             ccCCCcEEEEEeCCC-CCCEEEEEECCcc----------cc------CcccEEEECcCChhhCceEEEEEEcCCCccCCC
Confidence            456778889999888 7789999998743          01      237889999999999999999997621      


Q ss_pred             ------C-----C------CC-CCCCCcEEEEEEeE--------Eec-------------CCcEEEEcccCCCCCeeeEE
Q psy534           82 ------R-----S------PN-SHKNGTWFHLDVHG--------VFN-------------DGTELRISNIRSQDIGDYTC  122 (145)
Q Consensus        82 ------~-----~------~~-~~~~g~~~~l~c~~--------~~~-------------~~~~L~i~~v~~~d~G~Y~C  122 (145)
                            +     .      +. ....|+.+.|.|..        ...             .+..|.|.+++.+|+|.|+|
T Consensus        82 ~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C  161 (184)
T 2gi7_A           82 DQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRC  161 (184)
T ss_dssp             CCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEECSSCCCEEEEEECCCCTTSCCCCEEEEESSSEEEETTCCSEEEEE
T ss_pred             CCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEcCCCCcEEEEEECCCcCcceecCCCceEEEEEccCCccCCeEEEE
Confidence                  0     0      11 13459999999982        111             12357899999999999999


Q ss_pred             EEecCCC
Q psy534          123 LATHVLY  129 (145)
Q Consensus       123 ~a~n~~g  129 (145)
                      .|.|..+
T Consensus       162 ~a~n~~~  168 (184)
T 2gi7_A          162 YSFSSRD  168 (184)
T ss_dssp             EEECTTS
T ss_pred             EEEeCCC
Confidence            9999854

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.56  E-value=1.3e-14  Score=98.37  Aligned_cols=116  Identities=17%  Similarity=0.217  Sum_probs=82.4

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-----
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-----   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-----   82 (145)
                      ...+.++.+.|-+.|.|.+.+.|++++... ..  ..+..+..+   ....+|.|.+++.+|+|.|+|.+.+...     
T Consensus        19 v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~-~~--~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~   92 (197)
T 3lcy_A           19 TKLGEAAQLSCQIVGRPLPDIKWYRFGKEL-IQ--SRKYKMSSD---GRTHTLTVMTEEQEDEGVYTCIATNEVGEVETS   92 (197)
T ss_dssp             EETTSEEEEEEEEEEESCCEEEEEETTEEE-CC--CSSEEEEES---SSEEEEEEECCSGGGCEEEEEEEECSSCEEEEE
T ss_pred             EeCCCcEEEEEEEecCCCCEEEEEECCEEC-CC--CccEEEEeC---CCEEEEEEecCCccCCEEEEEEEECCCCceeEE
Confidence            345778888999989999999999987542 11  233333221   2356899999999999999999964320     


Q ss_pred             -----------CCC---C----CCCCcEEEEEEeE---------Ee---------------cC--CcEEEEcccCC-CCC
Q psy534           83 -----------SPN---S----HKNGTWFHLDVHG---------VF---------------ND--GTELRISNIRS-QDI  117 (145)
Q Consensus        83 -----------~~~---~----~~~g~~~~l~c~~---------~~---------------~~--~~~L~i~~v~~-~d~  117 (145)
                                 .+.   .    ...|..+.|.|..         +.               ..  ...|.|.++.. +|+
T Consensus        93 ~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~  172 (197)
T 3lcy_A           93 SKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHA  172 (197)
T ss_dssp             EEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHC
T ss_pred             EEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhC
Confidence                       111   0    1348899999981         00               01  14689999984 899


Q ss_pred             eeeEEEEecCCC
Q psy534          118 GDYTCLATHVLY  129 (145)
Q Consensus       118 G~Y~C~a~n~~g  129 (145)
                      |.|+|.|.|..|
T Consensus       173 G~Y~C~a~n~~g  184 (197)
T 3lcy_A          173 GKYKVQLSNVFG  184 (197)
T ss_dssp             EEEEEEEECSSC
T ss_pred             ceEEEEEEcCcC
Confidence            999999999998

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.56  E-value=2.9e-14  Score=97.64  Aligned_cols=114  Identities=12%  Similarity=0.121  Sum_probs=76.0

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec------
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN------   81 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~------   81 (145)
                      ...+.++.+.|.+.+.|. .+.|||++.... .....+ .     ......+|.|.+++.+|+|.|+|.+.+..      
T Consensus        16 v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~-~~~~~~-~-----~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s   87 (196)
T 2d3v_A           16 ISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEP-WDTQNP-L-----EPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPS   87 (196)
T ss_dssp             EETTCCEEEEEECCTTCC-EEEEEETTCSSC-SEEECC-C-----SSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCC
T ss_pred             ccCCCeEEEEEeCCCCCc-EEEEEECCCCCC-cccccc-c-----CCccccEEEeccCChhHCeEEEEEEeCCCCcCCcC
Confidence            346778889999888776 899999985421 111100 0     12347899999999999999999995421      


Q ss_pred             ------C-----CC-------CCCCCCcEEEEEEeE--------E---------------e-cCC---cEEEEcccCCCC
Q psy534           82 ------R-----SP-------NSHKNGTWFHLDVHG--------V---------------F-NDG---TELRISNIRSQD  116 (145)
Q Consensus        82 ------~-----~~-------~~~~~g~~~~l~c~~--------~---------------~-~~~---~~L~i~~v~~~d  116 (145)
                            +     .+       .....|+.+.|.|..        +               . ..+   ..|.|.+++.+|
T Consensus        88 ~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~p~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D  167 (196)
T 2d3v_A           88 DPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSH  167 (196)
T ss_dssp             CCEEEEEECSSCCCEEEC-----------CEEEEEESSCCSEEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTB
T ss_pred             ccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEcCCCCCEEEEEccCCcccccccccccccCCCceeEEEeeecCccc
Confidence                  0     01       012458899999981        0               0 111   479999999999


Q ss_pred             CeeeEEEEecCCC
Q psy534          117 IGDYTCLATHVLY  129 (145)
Q Consensus       117 ~G~Y~C~a~n~~g  129 (145)
                      +|.|+|.|.|..+
T Consensus       168 ~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          168 RWMLRCYGSRRHI  180 (196)
T ss_dssp             CEEEEEEEEETTE
T ss_pred             CeeEEEEEEccCC
Confidence            9999999999754

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.55  E-value=4.8e-15  Score=99.86  Aligned_cols=106  Identities=19%  Similarity=0.251  Sum_probs=77.2

Q ss_pred             hhhccceeeEEeecCCCcc-EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC----
Q psy534            8 KSIFQMLSVGDFADDEDIP-VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR----   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p-~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~----   82 (145)
                      ...+.++.+.|.+.+.|.+ .+.|++++...                ...+.+|.|.+++.+|+|.|+|.+.+...    
T Consensus        16 v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~----------------~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~s~~~   79 (176)
T 1f2q_A           16 IFKGENVTLTCNGNNFFEVSSTKWFHNGSLS----------------EETNSSLNIVNAKFEDSGEYKCQHQQVNESEPV   79 (176)
T ss_dssp             EETTCCEEEECCTTCC----CCEEEETTEEC----------------SCCSSEEEECSCCGGGCEEEEEECTTSSCCCCE
T ss_pred             eecCCcEEEEEeCCCCCCcceEEEEECCeEC----------------CCCceEEEEeccceecCEEEEEEcCCccccccE
Confidence            3466788889988888775 58999987431                12378899999999999999999843221    


Q ss_pred             -------------CCCCCCCCcEEEEEEeE----------Ee---------cCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534           83 -------------SPNSHKNGTWFHLDVHG----------VF---------NDGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus        83 -------------~~~~~~~g~~~~l~c~~----------~~---------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                                   +......|+.+.|.|..          +.         ..+..|.|.+++.+|+|.|+|.|.|..+
T Consensus        80 ~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  158 (176)
T 1f2q_A           80 YLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQL  158 (176)
T ss_dssp             EEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCCSSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEeCcceeecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeecCCCeEEECCCCcccCEEEEEEEEeCCc
Confidence                         11123468999999982          01         1345899999999999999999999754

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.55  E-value=1.4e-14  Score=107.95  Aligned_cols=112  Identities=20%  Similarity=0.230  Sum_probs=81.2

Q ss_pred             ccceeeEEeecCCCccEEEEecCCCCcc---cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-----
Q psy534           11 FQMLSVGDFADDEDIPVYIWYDSYPTHE---AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-----   82 (145)
Q Consensus        11 ~~~~~~~~w~~g~p~p~~~w~k~~~~~~---~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-----   82 (145)
                      +.++.+.|-+.|.|.|.+.|++++....   ......|+..       .+++|.|.+++.+|+|.|.|.+.+...     
T Consensus       227 G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  299 (388)
T 2v5m_A          227 AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQ-------VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVE  299 (388)
T ss_dssp             TSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEE-------ETTEEEESSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceec-------ccCEEEECcCCHHHCeEEEEEEecCCCceeEE
Confidence            4566777888899999999999753211   1112233332       267899999999999999999965321     


Q ss_pred             -------C------C--CCCCCCcEEEEEEeE---------E-------ecCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534           83 -------S------P--NSHKNGTWFHLDVHG---------V-------FNDGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus        83 -------~------~--~~~~~g~~~~l~c~~---------~-------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                             +      +  .....|+.+.|.|..         +       ...+..|.|.+++.+|+|.|+|.|.|..|
T Consensus       300 ~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  377 (388)
T 2v5m_A          300 TVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRE  377 (388)
T ss_dssp             EEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEEECSSC
T ss_pred             EEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccCCCEEEEecCChhhCEEEEEEEEcCCC
Confidence                   1      1  113468999999982         1       12345899999999999999999999999

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.55  E-value=6e-14  Score=101.45  Aligned_cols=118  Identities=14%  Similarity=0.127  Sum_probs=83.7

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec------
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN------   81 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~------   81 (145)
                      ...+.++.+.|-+.|.|.+.+.|++++.......  .+..+...  ..+..+|.|.+++.+|+|.|+|.+.+..      
T Consensus        16 v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~--~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~   91 (305)
T 2nzi_A           16 VRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG--LKYRIQEF--KGGYHQLIIASVTDDDATVYQVRATNQGGSVSGT   91 (305)
T ss_dssp             ECTTCCEEEEEEEECSSCCEEEEEETTEECCCCS--SSEEEEEE--TTTEEEEEESSCCGGGCSEEEEEEEETTEEEEEE
T ss_pred             EeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCC--CeEEEEEC--CCCEEEEEEccCChhhCeEEEEEEEcCCCCccce
Confidence            3456788899999999999999999875422211  22322110  1235699999999999999999996532      


Q ss_pred             ----C--C-----C------C--CCCCCcEEEEEEeE---------Ee-----------------cCCcEEEEcc-cCCC
Q psy534           82 ----R--S-----P------N--SHKNGTWFHLDVHG---------VF-----------------NDGTELRISN-IRSQ  115 (145)
Q Consensus        82 ----~--~-----~------~--~~~~g~~~~l~c~~---------~~-----------------~~~~~L~i~~-v~~~  115 (145)
                          +  +     +      .  ....|..+.|.|..         +.                 .....|.|.+ ++.+
T Consensus        92 ~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  171 (305)
T 2nzi_A           92 ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERK  171 (305)
T ss_dssp             EEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCST
T ss_pred             EEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCceEEEEecCCccC
Confidence                0  0     1      0  12348899999981         00                 0123688988 9999


Q ss_pred             CCeeeEEEEecCCC
Q psy534          116 DIGDYTCLATHVLY  129 (145)
Q Consensus       116 d~G~Y~C~a~n~~g  129 (145)
                      |+|.|+|.|.|..|
T Consensus       172 d~G~Y~C~a~N~~G  185 (305)
T 2nzi_A          172 DAGFYVVCAKNRFG  185 (305)
T ss_dssp             TCEEEEEEEEETTE
T ss_pred             ccEEEEEEEEeCCC
Confidence            99999999999998

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.55  E-value=5.3e-14  Score=110.65  Aligned_cols=115  Identities=17%  Similarity=0.210  Sum_probs=83.8

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec-------
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN-------   81 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-------   81 (145)
                      ..+.++.+.|-+.|.|.|.+.|+|++.. +...-+.++...     ....+|.|.+++.+|+|.|.|.|.+..       
T Consensus       210 ~~G~~~~l~C~~~g~p~p~i~W~k~g~~-i~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~  283 (570)
T 3b43_A          210 ALGESGTFKCHVTGTAPIKITWAKDNRE-IRPGGNYKMTLV-----ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSA  283 (570)
T ss_dssp             BSBSCEEEEEEEESSSCCEEEEEETTEE-CCTTSSEEEEEE-----TTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cCCCeEEEEEEEEECCCCEEEEEECCEE-CcCCCcEEEEEE-----CCEEEEEEcccCcccCEEEEEEEECCCCcEEEEE
Confidence            3566778889999999999999999854 222222233332     236889999999999999999996632       


Q ss_pred             ---C--CC------C---CCCCCcEEEEEEeE---------Ee-----------------cCCcEEEEcccCCCCCeeeE
Q psy534           82 ---R--SP------N---SHKNGTWFHLDVHG---------VF-----------------NDGTELRISNIRSQDIGDYT  121 (145)
Q Consensus        82 ---~--~~------~---~~~~g~~~~l~c~~---------~~-----------------~~~~~L~i~~v~~~d~G~Y~  121 (145)
                         +  +|      .   ....|+.+.|.|..         +.                 .....|.|.+++.+|+|.|+
T Consensus       284 ~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~  363 (570)
T 3b43_A          284 QLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYT  363 (570)
T ss_dssp             EECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEE
T ss_pred             EEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEE
Confidence               1  11      1   12358899999981         00                 11236899999999999999


Q ss_pred             EEEecCCC
Q psy534          122 CLATHVLY  129 (145)
Q Consensus       122 C~a~n~~g  129 (145)
                      |.|.|..|
T Consensus       364 C~a~N~~g  371 (570)
T 3b43_A          364 CEAHNAAG  371 (570)
T ss_dssp             EEEEBTTB
T ss_pred             EEEEeCCC
Confidence            99999998

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.55  E-value=8.2e-14  Score=96.02  Aligned_cols=121  Identities=15%  Similarity=0.037  Sum_probs=85.0

Q ss_pred             hhhccceeeEEeecCC-------CccEEEEecCCCCc--------------ccccccceEEEecCCCCCCeeeEEEcccC
Q psy534            8 KSIFQMLSVGDFADDE-------DIPVYIWYDSYPTH--------------EAEEYKGRISRVDKESPFGMASLNLTKIR   66 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~-------p~p~~~w~k~~~~~--------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~   66 (145)
                      +..+.++.+-|.+.+.       +.+.+.|||++...              ....+.+|+.+..+ ...++++|.|.+++
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~sL~I~~v~   90 (214)
T 2zg1_A           12 VQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGD-VQKKNCSLSIGDAR   90 (214)
T ss_dssp             EETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSC-GGGTBCCEEECSCC
T ss_pred             EecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEecc-CCCCeEEEEEccCC
Confidence            4567788888887754       67889999886420              12345678877432 22357799999999


Q ss_pred             CCCCEEEEEEEEEec--------C--------C--------CCCCCCCcEEEEEEeE-------------Ee--------
Q psy534           67 ESDQGWYECKVVFLN--------R--------S--------PNSHKNGTWFHLDVHG-------------VF--------  101 (145)
Q Consensus        67 ~~D~G~Y~C~~~~~~--------~--------~--------~~~~~~g~~~~l~c~~-------------~~--------  101 (145)
                      .+|+|.|.|.+.+..        .        .        +.....|+.+.|.|..             +.        
T Consensus        91 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~  170 (214)
T 2zg1_A           91 MEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLD  170 (214)
T ss_dssp             GGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--CCCCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSC
T ss_pred             HhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCccccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCC
Confidence            999999999986532        0        1        1113458899999982             01        


Q ss_pred             ---cCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          102 ---NDGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       102 ---~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                         .....|.|..+..+|.|.|+|.|.|..+
T Consensus       171 ~~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~  201 (214)
T 2zg1_A          171 PETTRSSELTLTPRPEDHGTNLTCQMKRQGA  201 (214)
T ss_dssp             SSCCCSSEEEECCCTTCCSCEEEEEEECC--
T ss_pred             CCceeEEEEEEecccHHcCcEEEEEEEeCCC
Confidence               1235799999999999999999999864

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.55  E-value=8.5e-14  Score=95.68  Aligned_cols=122  Identities=16%  Similarity=0.163  Sum_probs=79.5

Q ss_pred             hhhccceeeEEeecCCCcc---EEEEecCCCCccc-------------ccccceEEEecC----CCCCCeeeEEEcccCC
Q psy534            8 KSIFQMLSVGDFADDEDIP---VYIWYDSYPTHEA-------------EEYKGRISRVDK----ESPFGMASLNLTKIRE   67 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p---~~~w~k~~~~~~~-------------~~~~~R~~~~~~----~~~~~~~sL~I~~v~~   67 (145)
                      +.++..+.+-|.+.+.+.+   .+.|+|++.....             ....+|..+...    .....+++|.|.+++.
T Consensus        13 ~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~   92 (225)
T 4fmk_A           13 GRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRGLRV   92 (225)
T ss_dssp             EETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECSCCG
T ss_pred             EecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEccCCH
Confidence            4567888888998876654   4789998643211             112334333211    1223478899999999


Q ss_pred             CCCEEEEEEEEEecC-------------CC--------CCCCCCcEEEEEEeE----------E---------------e
Q psy534           68 SDQGWYECKVVFLNR-------------SP--------NSHKNGTWFHLDVHG----------V---------------F  101 (145)
Q Consensus        68 ~D~G~Y~C~~~~~~~-------------~~--------~~~~~g~~~~l~c~~----------~---------------~  101 (145)
                      +|+|.|.|.+.+...             ++        .....+....+.|..          .               .
T Consensus        93 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~~~~~  172 (225)
T 4fmk_A           93 EDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDTQEPGI  172 (225)
T ss_dssp             GGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEEEECS
T ss_pred             HHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCcceEEe
Confidence            999999999965321             11        122345566666651          0               0


Q ss_pred             cCC-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          102 NDG-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       102 ~~~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .++     +.|.|.+++.+|+|.|+|.|+|..+
T Consensus       173 ~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~  205 (225)
T 4fmk_A          173 QAGTVTIISRYSLVPVGRADGVKVTCRVEHESF  205 (225)
T ss_dssp             STTCEEEEEEEEECCCGGGTTCEEEEEEECTTC
T ss_pred             cCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCC
Confidence            111     2599999999999999999999987

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.54  E-value=1.4e-14  Score=108.35  Aligned_cols=112  Identities=16%  Similarity=0.120  Sum_probs=82.8

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC------
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR------   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~------   82 (145)
                      ..+.++.+.|.+.|.|.|.+.|++++..... .   +....     ..+.+|.|.+++.+|+|.|+|.+.+...      
T Consensus       235 ~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~-~---~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  305 (404)
T 3p3y_A          235 LRGMDLLLECIASGVPTPDIAWYKKGGDLPS-D---KAKFE-----NFNKALRITNVSEEDSGEYFCLASNKMGSIRHTI  305 (404)
T ss_dssp             ETTSCEEEECCBCCSSCCEEEEEETTBCCCT-T---TEEEE-----GGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             ecCCCEEEEEEECCCCCCcEEEEECCEECCC-C---ccccc-----ccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEE
Confidence            3566788889888999999999999854221 1   11221     2367899999999999999999965321      


Q ss_pred             ------------CCC--CCCCCcEEEEEEeE---------Ee----------------cCCcEEEEcccCCCCCeeeEEE
Q psy534           83 ------------SPN--SHKNGTWFHLDVHG---------VF----------------NDGTELRISNIRSQDIGDYTCL  123 (145)
Q Consensus        83 ------------~~~--~~~~g~~~~l~c~~---------~~----------------~~~~~L~i~~v~~~d~G~Y~C~  123 (145)
                                  .+.  ....|+.+.|.|..         +.                ..+..|.|.+++.+|+|.|+|.
T Consensus       306 ~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  385 (404)
T 3p3y_A          306 SVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCN  385 (404)
T ss_dssp             EEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEE
T ss_pred             EEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEE
Confidence                        111  13458999999981         00                1234799999999999999999


Q ss_pred             EecCCC
Q psy534          124 ATHVLY  129 (145)
Q Consensus       124 a~n~~g  129 (145)
                      |.|..|
T Consensus       386 a~N~~G  391 (404)
T 3p3y_A          386 TSNEHG  391 (404)
T ss_dssp             EEETTE
T ss_pred             EEeCCC
Confidence            999998

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.54  E-value=8.7e-14  Score=103.73  Aligned_cols=117  Identities=23%  Similarity=0.306  Sum_probs=86.1

Q ss_pred             hhccceeeEEeecCCCccEEEEecC--CCCcccc---cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDS--YPTHEAE---EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~--~~~~~~~---~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-   82 (145)
                      ..+.++.+.|-+.|.|.|.+.|+|+  +.. +..   ...+|+.+...   ..+++|.|.+++.+|+|.|.|.+.+... 
T Consensus        13 ~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~-~~~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   88 (389)
T 2jll_A           13 YENGQVTLVCDAEGEPIPEITWKRAVDGFT-FTEGDKSLDGRIEVKGQ---HGSSSLHIKDVKLSDSGRYDCEAASRIGG   88 (389)
T ss_dssp             ETTSEEEEEEEEECSSCCEEEEEETTTTEE-ECC--CCSSSSEEEEEC---SSEEEEEEESCCGGGCEEEEEEEECSSCE
T ss_pred             eCCCeEEEEEEeecccCCeEEEEeCCCCce-eccCcCCCCCeEEEecc---CCcceEEEcccChhhCEEEEEEEEeCCCC
Confidence            3477889999999999999999998  422 221   12456665321   3578999999999999999999965321 


Q ss_pred             -----------------CCC--CCCCCcEEEEEEeE---------E------ec-------------CCcEEEEcccCCC
Q psy534           83 -----------------SPN--SHKNGTWFHLDVHG---------V------FN-------------DGTELRISNIRSQ  115 (145)
Q Consensus        83 -----------------~~~--~~~~g~~~~l~c~~---------~------~~-------------~~~~L~i~~v~~~  115 (145)
                                       .+.  ....|+.+.|.|..         +      ..             ....|.|.+++.+
T Consensus        89 ~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~  168 (389)
T 2jll_A           89 HQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDN  168 (389)
T ss_dssp             EEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTT
T ss_pred             cceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChh
Confidence                             111  12458999999981         0      00             1235999999999


Q ss_pred             CCeeeEEEEecCCC
Q psy534          116 DIGDYTCLATHVLY  129 (145)
Q Consensus       116 d~G~Y~C~a~n~~g  129 (145)
                      |+|.|+|.|.|..|
T Consensus       169 d~G~Y~C~a~N~~G  182 (389)
T 2jll_A          169 DFGRYNCTATNHIG  182 (389)
T ss_dssp             SSEEEEEEEEETTE
T ss_pred             hCEEEEEEEEcCCC
Confidence            99999999999998

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.54  E-value=3.3e-14  Score=94.83  Aligned_cols=106  Identities=14%  Similarity=0.171  Sum_probs=78.7

Q ss_pred             hhhccceeeEEeecCCC-ccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC----
Q psy534            8 KSIFQMLSVGDFADDED-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR----   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~----   82 (145)
                      ...+.++.+.|.+.+.| .+.+.|++++... .               .....+.|.+++.+|+|.|.|.+.+...    
T Consensus        16 v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~-~---------------~~~~~~~~~~~~~~d~G~Y~C~~~~~~~s~~~   79 (170)
T 3ry4_A           16 VLQEDSVTLTCQGARSPESDSIQWFHNGNLI-P---------------THTQPSYRFKANNNDSGEYTCQTGQTSLSDPV   79 (170)
T ss_dssp             EETTCEEEEEEESCCCSSSSCEEEEETTEEC-T---------------TCCSSEEEEECCGGGCEEEEEEETTSBCCCCE
T ss_pred             EECCCcEEEEEEecCCCCcceEEEEECCeEc-c---------------cCccceEEEecccccCeEEEEEEeCCCceEeE
Confidence            34567788899999886 6789999987431 1               1255677889999999999999943211    


Q ss_pred             ------------CCC-CCCCCcEEEEEEeE-------------------EecCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534           83 ------------SPN-SHKNGTWFHLDVHG-------------------VFNDGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus        83 ------------~~~-~~~~g~~~~l~c~~-------------------~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                                  .+. ....|+.+.|.|..                   ....+..|.|.+++.+|+|.|+|.|.|..|
T Consensus        80 ~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  158 (170)
T 3ry4_A           80 HLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYT  158 (170)
T ss_dssp             EEEEECCSEEEECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEESSCCEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEECCceEecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccCCCCeEEEEeccccCCEEEEEEEEeCcC
Confidence                        111 13468899999982                   012345899999999999999999999987

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.54  E-value=5.4e-14  Score=97.15  Aligned_cols=119  Identities=18%  Similarity=0.219  Sum_probs=81.0

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccc-cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC----
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAE-EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR----   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~-~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~----   82 (145)
                      ...+.++.+.|-+.|.|.+.+.|++++...... ....|+.+..   ......|.|.+++.+|+|.|+|.+.+...    
T Consensus        21 v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~---~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~~~   97 (217)
T 2vr9_A           21 VKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKD---GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVS   97 (217)
T ss_dssp             ECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTT---SCEEESSCCBSSSCBCCEEEEEEEEETTEEEEC
T ss_pred             EeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecC---CceEEEEEeccCCcccCceEEEEEecCCCcccc
Confidence            345677888899989999999999987532211 1223333210   01122347889999999999999965210    


Q ss_pred             ----------CCC--------CCCCCcEEEEEEeE----------E------e----------------cCCcEEEEccc
Q psy534           83 ----------SPN--------SHKNGTWFHLDVHG----------V------F----------------NDGTELRISNI  112 (145)
Q Consensus        83 ----------~~~--------~~~~g~~~~l~c~~----------~------~----------------~~~~~L~i~~v  112 (145)
                                ++.        ....|..+.|.|..          +      .                ..+..|.|.++
T Consensus        98 ~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~  177 (217)
T 2vr9_A           98 RHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNV  177 (217)
T ss_dssp             CCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEETTTEEEESSC
T ss_pred             ccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEecCCCcEEEeeC
Confidence                      111        12458899999961          0      0                12247999999


Q ss_pred             CCCCCeeeEEEEecCCC
Q psy534          113 RSQDIGDYTCLATHVLY  129 (145)
Q Consensus       113 ~~~d~G~Y~C~a~n~~g  129 (145)
                      +.+|+|.|+|.|+|..|
T Consensus       178 ~~~d~G~Y~C~a~N~~G  194 (217)
T 2vr9_A          178 EPIDEGNYKCIAQNLVG  194 (217)
T ss_dssp             CSTTCEEEEEEEEETTE
T ss_pred             CHHHCeEEEEEEEcccc
Confidence            99999999999999998

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.54  E-value=4.4e-14  Score=105.70  Aligned_cols=124  Identities=19%  Similarity=0.286  Sum_probs=88.3

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC------
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR------   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~------   82 (145)
                      ..+.++.+.|.+.|.|.+.+.|++++..........+...      ..+++|.|.+++.+|+|.|+|.+.+...      
T Consensus       134 ~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~------~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~  207 (403)
T 3laf_A          134 FMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVV------LPSGALQISRLQPGDSGVYRCSARNPASTRTGNE  207 (403)
T ss_dssp             ETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEE------CTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCC
T ss_pred             EcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEE------cCCceEEEcccccccCEEEEEEEEcCCCceeccc
Confidence            3466778888888999999999999864322223344444      2367899999999999999999975321      


Q ss_pred             -------CCC--------------CCCCCcEEEEEEeEE------------------------ecCCcEEEEcccCCCCC
Q psy534           83 -------SPN--------------SHKNGTWFHLDVHGV------------------------FNDGTELRISNIRSQDI  117 (145)
Q Consensus        83 -------~~~--------------~~~~g~~~~l~c~~~------------------------~~~~~~L~i~~v~~~d~  117 (145)
                             .+.              ....|+.+.|.|...                        ...+..|.|.+++.+|+
T Consensus       208 ~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  287 (403)
T 3laf_A          208 AEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDS  287 (403)
T ss_dssp             EEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGC
T ss_pred             eeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHC
Confidence                   110              022588999999810                        11234799999999999


Q ss_pred             eeeEEEEecCCC-----CcEEEEeCe
Q psy534          118 GDYTCLATHVLY-----PDLLVVLGS  138 (145)
Q Consensus       118 G~Y~C~a~n~~g-----~~~~v~~~~  138 (145)
                      |.|+|.|.|..|     ..+.|....
T Consensus       288 G~Y~C~a~n~~g~~~~~~~l~V~~~p  313 (403)
T 3laf_A          288 GTYTCVVTYKNENISASAELTVLVPP  313 (403)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred             EEEEEEEEcCCCceEEEEEEEEECCC
Confidence            999999999987     455554433

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.54  E-value=4.2e-14  Score=102.54  Aligned_cols=112  Identities=21%  Similarity=0.343  Sum_probs=78.8

Q ss_pred             hccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-------
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-------   82 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-------   82 (145)
                      .+.++.+.|-+.|.|.|.+.|++++..........|+..      ..+++|.|.+++.+|+|.|.|.+.+...       
T Consensus       122 ~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  195 (304)
T 2yd9_A          122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ------LRSGALQIESSEETDQGKYECVATNSAGVRYSSPA  195 (304)
T ss_dssp             TTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEE------CTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             CCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEe------CCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccE
Confidence            456777888888999999999999754322223345544      2366999999999999999999965310       


Q ss_pred             ---------------CCC--CCCCCcEEEEEEeE---------EecC-----------CcE--EEEcccCCCCCeeeEEE
Q psy534           83 ---------------SPN--SHKNGTWFHLDVHG---------VFND-----------GTE--LRISNIRSQDIGDYTCL  123 (145)
Q Consensus        83 ---------------~~~--~~~~g~~~~l~c~~---------~~~~-----------~~~--L~i~~v~~~d~G~Y~C~  123 (145)
                                     .+.  ....|+.+.|.|..         +..+           ...  |.|.++  +|+|.|+|.
T Consensus       196 ~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~  273 (304)
T 2yd9_A          196 NLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDV--KDSANYTCV  273 (304)
T ss_dssp             EEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCCBSEEEEEECSC--CSCEEEEEE
T ss_pred             EEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCcccccCCcEEEEEccc--ccCEEEEEE
Confidence                           111  23568999999982         1111           113  555554  699999999


Q ss_pred             EecCCC
Q psy534          124 ATHVLY  129 (145)
Q Consensus       124 a~n~~g  129 (145)
                      |.|..|
T Consensus       274 a~N~~G  279 (304)
T 2yd9_A          274 AMSSLG  279 (304)
T ss_dssp             EEETTE
T ss_pred             EEeCCC
Confidence            999998

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.53  E-value=1.8e-14  Score=105.54  Aligned_cols=115  Identities=25%  Similarity=0.311  Sum_probs=81.2

Q ss_pred             hccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec--------
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN--------   81 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--------   81 (145)
                      .+.++.+.|.+.|.|.|.+.|++++.............     ......+|.|.+++.+|+|.|.|.+.+..        
T Consensus       137 ~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~-----~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~  211 (334)
T 1ry7_B          137 AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIK-----LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYT  211 (334)
T ss_dssp             TTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCC-----CCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEE
T ss_pred             CCCcEEEEEEccCCCCCeEEEEECCEECccccccccee-----cccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEE
Confidence            46677888988899999999999875422111111111     12347789999999999999999996531        


Q ss_pred             -----CC---CCC---------CCCCcEEEEEEeE---------Eec-----------CC-------------------c
Q psy534           82 -----RS---PNS---------HKNGTWFHLDVHG---------VFN-----------DG-------------------T  105 (145)
Q Consensus        82 -----~~---~~~---------~~~g~~~~l~c~~---------~~~-----------~~-------------------~  105 (145)
                           .+   +..         ...|+.+.|.|..         +..           ++                   .
T Consensus       212 l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (334)
T 1ry7_B          212 LDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE  291 (334)
T ss_dssp             EEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCC
T ss_pred             EEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCcccccccccc
Confidence                 01   100         1248889999971         111           00                   1


Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|+|.|.|..|
T Consensus       292 ~L~i~~v~~~d~G~Y~C~a~N~~G  315 (334)
T 1ry7_B          292 VLSLHNVTFEDAGEYTCLAGNSIG  315 (334)
T ss_dssp             CEEECSCCTTSCSEEEEEEEESSC
T ss_pred             EEEEccCCHHHCEEEEEEEeCCCC
Confidence            699999999999999999999999

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.53  E-value=6.7e-14  Score=94.17  Aligned_cols=116  Identities=16%  Similarity=0.198  Sum_probs=80.7

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-----
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-----   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-----   82 (145)
                      ...+.++.+.|-+.|.|.+.+.|++++.. +...  .+..+... ......+|.|.+++.+|+|.|.|.+.+...     
T Consensus        14 v~~G~~v~l~C~~~~~p~~~v~W~k~~~~-~~~~--~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~   89 (182)
T 1rhf_A           14 VSQGQPVKLNCSVEGMEEPDIQWVKDGAV-VQNL--DQLYIPVS-EQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQ   89 (182)
T ss_dssp             EETTCCEEEEEEEESCSSCCEEEEETTEE-CCSS--EEEEEEEE-TTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECC
T ss_pred             EeCCCcEEEEEEEeCCCCCeEEEEECCee-cCCC--CceEEEec-CCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEE
Confidence            34567888899999999999999998743 2222  22222111 112257899999999999999999954310     


Q ss_pred             --------CC------C--CCCCCcEEEEEEeEE----------e----------cCCcEEEEcccCCCCCeeeEEEEec
Q psy534           83 --------SP------N--SHKNGTWFHLDVHGV----------F----------NDGTELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus        83 --------~~------~--~~~~g~~~~l~c~~~----------~----------~~~~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                              +|      .  ....|+.+.|.|...          .          .....|.|.++  +|+|.|+|.|.|
T Consensus        90 ~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N  167 (182)
T 1rhf_A           90 PVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGV--TQSTMFSCEAHN  167 (182)
T ss_dssp             CEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEESSEEEEECCC--SSCEEEEEEEEE
T ss_pred             EEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCCCceEEEEecc--ccCeEEEEEEEC
Confidence                    11      1  134588999999821          0          12347888888  589999999999


Q ss_pred             CCC
Q psy534          127 VLY  129 (145)
Q Consensus       127 ~~g  129 (145)
                      ..|
T Consensus       168 ~~g  170 (182)
T 1rhf_A          168 LKG  170 (182)
T ss_dssp             TTE
T ss_pred             CCC
Confidence            998

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.53  E-value=5e-14  Score=105.14  Aligned_cols=117  Identities=17%  Similarity=0.148  Sum_probs=84.0

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC------
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR------   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~------   82 (145)
                      ..+.++.+.|.+.|.|.|.+.|++++.. +......|+....   .....+|.|.+++.+|+|.|.|.+.+...      
T Consensus       225 ~~G~~v~l~C~~~g~p~~~i~W~~~g~~-~~~~~~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  300 (395)
T 1bih_A          225 KAGDVTMIYCMYGSNPMGYPNYFKNGKD-VNGNPEDRITRHN---RTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHS  300 (395)
T ss_dssp             ETTSCEEEEEEEECSSCCCCEEEETTEE-CCCCTTSSEESCS---SSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEE
T ss_pred             ECCCcEEEEEEeccCCCCeEEEEECCEE-cCCCCceeEEEEe---cCCCceEEEccCChhhCEEEEEEEEeCCCCceEEE
Confidence            4566788889999999999999999743 2222233433211   12234799999999999999999954210      


Q ss_pred             -------------CCC---CCCCCcEEEEEEeE---------Ee------------cCCcEEEEcccCCCCCeeeEEEEe
Q psy534           83 -------------SPN---SHKNGTWFHLDVHG---------VF------------NDGTELRISNIRSQDIGDYTCLAT  125 (145)
Q Consensus        83 -------------~~~---~~~~g~~~~l~c~~---------~~------------~~~~~L~i~~v~~~d~G~Y~C~a~  125 (145)
                                   .+.   ....|+.+.|.|..         +.            ..+..|.|.+++.+|+|.|+|.|.
T Consensus       301 ~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  380 (395)
T 1bih_A          301 LKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRAT  380 (395)
T ss_dssp             EEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEE
T ss_pred             EEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCCceEEECCEEEEeeCCcccCEEEEEEEE
Confidence                         111   13568999999981         10            012389999999999999999999


Q ss_pred             cCCC
Q psy534          126 HVLY  129 (145)
Q Consensus       126 n~~g  129 (145)
                      |..|
T Consensus       381 N~~G  384 (395)
T 1bih_A          381 NEHG  384 (395)
T ss_dssp             ETTE
T ss_pred             ccCC
Confidence            9998

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.53  E-value=4.2e-14  Score=96.29  Aligned_cols=119  Identities=15%  Similarity=0.206  Sum_probs=82.1

Q ss_pred             hhhccceeeEEeec-CCCccEEEEecCCCCcccccc--cceEEEecCCCCCC--eeeEEEcccCCCCCEEEEEEEEEecC
Q psy534            8 KSIFQMLSVGDFAD-DEDIPVYIWYDSYPTHEAEEY--KGRISRVDKESPFG--MASLNLTKIRESDQGWYECKVVFLNR   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~~~--~~R~~~~~~~~~~~--~~sL~I~~v~~~D~G~Y~C~~~~~~~   82 (145)
                      ...+.++.+.|-+. |.|.+.+.|++++.. +...-  +.++.+..+.....  ..+|.|.+++.+|+|.|.|.+.+...
T Consensus        14 v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~-l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~   92 (195)
T 2c5d_C           14 GARGLTGTLRCQLQVQGEPPEVHWLRDGQI-LELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQ   92 (195)
T ss_dssp             ECTTCCEEEEEEEEEESSCCCCEEEETTEE-CCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEETTE
T ss_pred             EecCCcEEEecccccCCCCcEEEEEECCEE-cccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEeCCC
Confidence            34567888999999 999999999998754 22221  22333211100011  57899999999999999999965320


Q ss_pred             -------------CC------C--CCCCCcEEEEEEeEE----------e------------cCCcEEEEcccCCCCCee
Q psy534           83 -------------SP------N--SHKNGTWFHLDVHGV----------F------------NDGTELRISNIRSQDIGD  119 (145)
Q Consensus        83 -------------~~------~--~~~~g~~~~l~c~~~----------~------------~~~~~L~i~~v~~~d~G~  119 (145)
                                   +|      .  ....|..+.|.|...          .            .....|.|.+++  |+|.
T Consensus        93 ~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~--d~G~  170 (195)
T 2c5d_C           93 TFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLN--KTSS  170 (195)
T ss_dssp             EEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTSSCCEEEEECCCS--SCEE
T ss_pred             ceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCcCCCCeEEEcccc--cCce
Confidence                         11      1  124588999999820          0            134579999887  7999


Q ss_pred             eEEEEecCCC
Q psy534          120 YTCLATHVLY  129 (145)
Q Consensus       120 Y~C~a~n~~g  129 (145)
                      |+|.|.|..|
T Consensus       171 Y~C~a~N~~g  180 (195)
T 2c5d_C          171 FSCEAHNAKG  180 (195)
T ss_dssp             EEEEEEETTE
T ss_pred             EEEEEEcCCC
Confidence            9999999988

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.52  E-value=1.5e-14  Score=108.27  Aligned_cols=112  Identities=19%  Similarity=0.289  Sum_probs=82.5

Q ss_pred             hccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-------
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-------   82 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-------   82 (145)
                      .+.++.+.|-+.|.|.|.+.|++++.....  ...+...      ..+.+|.|.+++.+|+|.|+|.+.+...       
T Consensus       235 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~--~~~~~~~------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  306 (403)
T 3laf_A          235 EGKDAVLECCVSGYPPPSFTWLRGEEVIQL--RSKKYSL------LGGSNLLISNVTDDDSGTYTCVVTYKNENISASAE  306 (403)
T ss_dssp             TTSCEEECCEEEEESCCEEEEEETTEECCC--SSSSEEE------ETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CCCcEEEEEEcCCCCCCeEEEEECCeeccC--CCceEEE------CCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEE
Confidence            466777888888999999999998753211  1223333      2367899999999999999999965320       


Q ss_pred             -----------CCC--CCCCCcEEEEEEeE-----------------------EecCCcEEEEcccCCCCCeeeEEEEec
Q psy534           83 -----------SPN--SHKNGTWFHLDVHG-----------------------VFNDGTELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus        83 -----------~~~--~~~~g~~~~l~c~~-----------------------~~~~~~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                                 .+.  ....|..+.|.|..                       ....+..|.|.+++.+|+|.|+|.|.|
T Consensus       307 l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  386 (403)
T 3laf_A          307 LTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAEN  386 (403)
T ss_dssp             EEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEc
Confidence                       111  13468899999981                       012235799999999999999999999


Q ss_pred             CCC
Q psy534          127 VLY  129 (145)
Q Consensus       127 ~~g  129 (145)
                      ..|
T Consensus       387 ~~G  389 (403)
T 3laf_A          387 EAG  389 (403)
T ss_dssp             TTE
T ss_pred             CCc
Confidence            998

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.52  E-value=6.9e-14  Score=97.25  Aligned_cols=106  Identities=15%  Similarity=0.170  Sum_probs=80.9

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC------
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR------   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~------   82 (145)
                      ..+.++.+.|.+.|.|.+.+.|++++.....               ....+|.|.+++.+|+|.|+|.+.+...      
T Consensus        31 ~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~---------------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~   95 (218)
T 3k0w_A           31 LAGQFVKLCCRATGHPFVQYQWFKMNKEIPN---------------GNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQW   95 (218)
T ss_dssp             ETTSBEEEECEETTTTSSEEEEEETTEECTT---------------CCSSEEEETTCCGGGCEEEEEEEECTTCCEECCC
T ss_pred             eCCCcEEEEeeecCCCCCEEEEEECCEECCC---------------CCCCEEEEccCChhhCeEeEEEEEcCCCCceeeE
Confidence            4567888899999999999999998743110               2367899999999999999999965310      


Q ss_pred             -------C---------------C------C--CCCCCcEEEEEEeE---------Ee--------cCCcEEEEcccCCC
Q psy534           83 -------S---------------P------N--SHKNGTWFHLDVHG---------VF--------NDGTELRISNIRSQ  115 (145)
Q Consensus        83 -------~---------------~------~--~~~~g~~~~l~c~~---------~~--------~~~~~L~i~~v~~~  115 (145)
                             .               +      .  ....|..+.|.|..         +.        .....|.|.+++.+
T Consensus        96 ~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~~~L~i~~v~~~  175 (218)
T 3k0w_A           96 SQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLE  175 (218)
T ss_dssp             EEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCSSEEEESSCCGG
T ss_pred             EEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCCCEEEEeecChh
Confidence                   1               0      0  12348899999982         11        12347999999999


Q ss_pred             CCeeeEEEEecCCC
Q psy534          116 DIGDYTCLATHVLY  129 (145)
Q Consensus       116 d~G~Y~C~a~n~~g  129 (145)
                      |+|.|+|.|.|..|
T Consensus       176 d~G~Y~C~a~n~~g  189 (218)
T 3k0w_A          176 HQGTYWCHVYNDRD  189 (218)
T ss_dssp             GCEEEEEEEECSSC
T ss_pred             cCEEEEEEEEcCCC
Confidence            99999999999887

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.52  E-value=2.3e-14  Score=104.01  Aligned_cols=126  Identities=14%  Similarity=0.107  Sum_probs=82.8

Q ss_pred             hccceeeEEee-cCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC------
Q psy534           10 IFQMLSVGDFA-DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR------   82 (145)
Q Consensus        10 ~~~~~~~~~w~-~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~------   82 (145)
                      .+..+.+.|.. .|.|.|.+.|++++.....     ......+........|.|.+++.+|.|.|+|.+.+...      
T Consensus       128 ~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~-----~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  202 (308)
T 4fom_A          128 GNETVAAICIAATGKPVAHIDWEGDLGEMES-----TTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRY  202 (308)
T ss_dssp             CSCEEEEEEEEEEEBSCCEEEECCCSSBCCE-----EEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEE
T ss_pred             CCceEEEEEEecCCcCCceEEEEECCccccc-----ccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEE
Confidence            34567778875 4899999999999854211     11111110111246799999999999999999965320      


Q ss_pred             --------CC-------C--CCCCCcEEEEEEeE----------E------------ecCCcEEEEcccCCCCCeeeEEE
Q psy534           83 --------SP-------N--SHKNGTWFHLDVHG----------V------------FNDGTELRISNIRSQDIGDYTCL  123 (145)
Q Consensus        83 --------~~-------~--~~~~g~~~~l~c~~----------~------------~~~~~~L~i~~v~~~d~G~Y~C~  123 (145)
                              +|       .  ....|+.+.|.|..          +            ...+..|.|.+++.+|+|.|+|.
T Consensus       203 ~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~  282 (308)
T 4fom_A          203 SFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVYICK  282 (308)
T ss_dssp             EEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCBCSTTEEECCSCCCSCCCSEEEEE
T ss_pred             eEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEEEcCCeEEEECCCChhhCEEEEEE
Confidence                    01       1  12347789999971          0            11233466789999999999999


Q ss_pred             EecCCC-----CcEEEEeCeeE
Q psy534          124 ATHVLY-----PDLLVVLGSFH  140 (145)
Q Consensus       124 a~n~~g-----~~~~v~~~~~~  140 (145)
                      |.|.+|     ..|.|...++|
T Consensus       283 A~N~~G~~~~~~~l~V~~~P~~  304 (308)
T 4fom_A          283 VTNSLGQRSDQKVIYISDPPHH  304 (308)
T ss_dssp             EEETTEEEEEEEECCEECCC--
T ss_pred             EEeCCCcEEEEEEEEEEcCCCC
Confidence            999999     55666666654

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.52  E-value=3.1e-14  Score=98.76  Aligned_cols=118  Identities=15%  Similarity=0.090  Sum_probs=78.0

Q ss_pred             cceeeEEeecCCCccEEEEecC--CCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec--------
Q psy534           12 QMLSVGDFADDEDIPVYIWYDS--YPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN--------   81 (145)
Q Consensus        12 ~~~~~~~w~~g~p~p~~~w~k~--~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--------   81 (145)
                      .++.+.|-+.+ |.+.++|++.  ++..+...  .+...      .....|.|.+++.+|+|.|+|.+.+..        
T Consensus        25 ~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~--~~~~~------~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~   95 (213)
T 2x1w_L           25 KTVVIPCLGSI-SNLNVSLCARYPEKRFVPDG--NRISW------DSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMY   95 (213)
T ss_dssp             CEEEECCCBSS-TTCCEEEEEETTTEEECCCS--SSCEE------ETTTEEEEEGGGTTTCSEEEEEEC----CEECCCE
T ss_pred             ccEEEeeccCC-CCcEEEEEhhcCCCccccCC--Ccccc------cCCccEEEccCChhcCceEEEEEEECCeeEEEEEE
Confidence            77888887766 6788999875  22222111  22222      125679999999999999999994321        


Q ss_pred             ---C-----------CCC--CCCCCcEEEEEEeEE-----------ecC-------------------------CcEEEE
Q psy534           82 ---R-----------SPN--SHKNGTWFHLDVHGV-----------FND-------------------------GTELRI  109 (145)
Q Consensus        82 ---~-----------~~~--~~~~g~~~~l~c~~~-----------~~~-------------------------~~~L~i  109 (145)
                         +           ++.  ....|+.+.|.|...           ...                         ...|.|
T Consensus        96 ~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I  175 (213)
T 2x1w_L           96 IVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI  175 (213)
T ss_dssp             EEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEE
T ss_pred             EEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEE
Confidence               0           111  124589999999811           000                         113899


Q ss_pred             cccCCCCCeeeEEEEecCCC-----CcEEEEeCe
Q psy534          110 SNIRSQDIGDYTCLATHVLY-----PDLLVVLGS  138 (145)
Q Consensus       110 ~~v~~~d~G~Y~C~a~n~~g-----~~~~v~~~~  138 (145)
                      .+++.+|+|.|+|.|.|..|     ..+.|....
T Consensus       176 ~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p  209 (213)
T 2x1w_L          176 DGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP  209 (213)
T ss_dssp             SSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC--
T ss_pred             CCCCcccCEEEEEEEecCCCcEEEEEEEEEeccc
Confidence            99999999999999999998     555555443

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.52  E-value=1.2e-13  Score=100.07  Aligned_cols=115  Identities=14%  Similarity=0.139  Sum_probs=81.7

Q ss_pred             hhccceeeEEeecC----------CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            9 SIFQMLSVGDFADD----------EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         9 ~~~~~~~~~~w~~g----------~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+.++.+.|...|          .|.+.+.|++++.... .  ..|.....   ......|.|.+++.+|+|.|+|.+.
T Consensus       111 ~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~-~--~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~a~  184 (317)
T 2y25_A          111 LSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIR-Y--SDRVKTGV---TGEQIWLQINEPTPNDKGKYVMELF  184 (317)
T ss_dssp             TCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCC-C--CSSEEEEE---CSSEEEEEEESCCGGGCEEEEEEEE
T ss_pred             ccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECC-C--CCCeEEec---cCCEEEEEECcCCcccCeeEEEEEE
Confidence            45667777777766          7899999999985422 1  23343322   1235679999999999999999996


Q ss_pred             EecC---------------------------------------CCC--CCCCCcEEEEEEeE---------Ee-------
Q psy534           79 FLNR---------------------------------------SPN--SHKNGTWFHLDVHG---------VF-------  101 (145)
Q Consensus        79 ~~~~---------------------------------------~~~--~~~~g~~~~l~c~~---------~~-------  101 (145)
                      +...                                       .+.  ....|+.+.|.|..         +.       
T Consensus       185 n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~  264 (317)
T 2y25_A          185 DGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALA  264 (317)
T ss_dssp             CSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEEC
T ss_pred             eCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCC
Confidence            5220                                       011  12458899999981         00       


Q ss_pred             --------cC-C--cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          102 --------ND-G--TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       102 --------~~-~--~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                              .. +  ..|.|.+++.+|+|.|+|.|.|..|
T Consensus       265 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  303 (317)
T 2y25_A          265 SDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYG  303 (317)
T ss_dssp             CCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTE
T ss_pred             CCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCC
Confidence                    01 1  2799999999999999999999998

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.52  E-value=3.7e-14  Score=111.14  Aligned_cols=121  Identities=12%  Similarity=0.040  Sum_probs=82.8

Q ss_pred             hhccceeeEEeec-CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec------
Q psy534            9 SIFQMLSVGDFAD-DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN------   81 (145)
Q Consensus         9 ~~~~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~------   81 (145)
                      ..+.++.+.|-+. |.|.|.+.|++++..........+.....+.......+|.|.+++.+|+|.|+|.|.+..      
T Consensus       240 ~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~L  319 (527)
T 3qs9_E          240 KVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALV  319 (527)
T ss_dssp             CTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTEEEEEEEE
T ss_pred             eCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeCCCceEEE
Confidence            3567788899996 999999999999864322111111111111001235679999999999999999985421      


Q ss_pred             -C--C------C----CCCCCCcEEEEEEeE---------Ee-------------cCCcEEEEcccCCCCCeeeEEEEec
Q psy534           82 -R--S------P----NSHKNGTWFHLDVHG---------VF-------------NDGTELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus        82 -~--~------~----~~~~~g~~~~l~c~~---------~~-------------~~~~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                       +  .      +    .....|+.+.|.|..         +.             ..+..|.|.+++.+|+|.|+|.|.|
T Consensus       320 ~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N  399 (527)
T 3qs9_E          320 TIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAEN  399 (527)
T ss_dssp             EEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEE
T ss_pred             EEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccccCCcEEEEecCCcccCEEEEEEEEe
Confidence             1  1      1    123458899999981         00             1234799999999999999999999


Q ss_pred             CCC
Q psy534          127 VLY  129 (145)
Q Consensus       127 ~~g  129 (145)
                      ..|
T Consensus       400 ~~g  402 (527)
T 3qs9_E          400 DDA  402 (527)
T ss_dssp             TTE
T ss_pred             CCC
Confidence            998

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.52  E-value=2.4e-14  Score=98.75  Aligned_cols=119  Identities=17%  Similarity=0.139  Sum_probs=83.5

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC-Cc----------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP-TH----------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~-~~----------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      ...+.++.+.|-+.|.|.+.+.||++.. ..          ....+.+|+.+..   .....+|.|.+++.+|+|.|+|.
T Consensus        13 v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~   89 (213)
T 3d9a_L           13 VTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG---SGTDFTLSINSVETEDFGMYFCQ   89 (213)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE---ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEc---CCCEEEEEECCCChhhCEEEEEe
Confidence            4567788999999999888999998542 11          1123445666532   13467999999999999999999


Q ss_pred             EEEec-----------C-----CCCC--------CCCCcEEEEEEeEE-----------e------cCC-----------
Q psy534           77 VVFLN-----------R-----SPNS--------HKNGTWFHLDVHGV-----------F------NDG-----------  104 (145)
Q Consensus        77 ~~~~~-----------~-----~~~~--------~~~g~~~~l~c~~~-----------~------~~~-----------  104 (145)
                      +.+..           +     +|..        ...|..+.|.|...           .      ..+           
T Consensus        90 ~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~  169 (213)
T 3d9a_L           90 QSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK  169 (213)
T ss_dssp             ECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTT
T ss_pred             eecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCC
Confidence            95431           0     1110        11377999999820           0      011           


Q ss_pred             -------cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 -------TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 -------~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                             ..|.|.++..+|+|.|+|.|.|...
T Consensus       170 ~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  201 (213)
T 3d9a_L          170 DSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  201 (213)
T ss_dssp             TCCEEEEEEEEEEHHHHHHCCEEEEEEECTTC
T ss_pred             CCCEEEEEEEEEeccccCCCCEEEEEEEEccC
Confidence                   1789999999999999999999875

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.51  E-value=2.4e-14  Score=98.27  Aligned_cols=120  Identities=17%  Similarity=0.220  Sum_probs=78.2

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccc--cceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC----
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEY--KGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR----   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~--~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~----   82 (145)
                      ..+.++.+.|-+.|.|.+.+.|++++........  ..+.....+ .......|.|.+++.+|+|.|+|.+.+...    
T Consensus        22 ~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~  100 (212)
T 2v9r_A           22 SKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS-GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVS  100 (212)
T ss_dssp             CTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTT-SCEEESSCCCCSSCCCSCEEEEEEEEETTEEEEC
T ss_pred             eCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecC-CcEEEEEEEecCCCcccCeEEEEEEECCCCceee
Confidence            4567788889888889999999998743211111  111111110 011123355667899999999999965310    


Q ss_pred             ----------CC------C--CCCCCcEEEEEEeE----------E------e--------cCCcEEEEcccCCCCCeee
Q psy534           83 ----------SP------N--SHKNGTWFHLDVHG----------V------F--------NDGTELRISNIRSQDIGDY  120 (145)
Q Consensus        83 ----------~~------~--~~~~g~~~~l~c~~----------~------~--------~~~~~L~i~~v~~~d~G~Y  120 (145)
                                ++      .  ....|+.+.|.|..          +      .        ..+..|.|.+++.+|+|.|
T Consensus       101 ~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y  180 (212)
T 2v9r_A          101 HDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKY  180 (212)
T ss_dssp             CCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEETTEEEESSCCGGGCEEE
T ss_pred             cceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccCCeEEEeeCCHhhCeeE
Confidence                      11      0  12348899999971          0      0        1124799999999999999


Q ss_pred             EEEEecCCC
Q psy534          121 TCLATHVLY  129 (145)
Q Consensus       121 ~C~a~n~~g  129 (145)
                      +|.|.|..|
T Consensus       181 ~C~a~N~~g  189 (212)
T 2v9r_A          181 VCVGTNMVG  189 (212)
T ss_dssp             EEEEEETTE
T ss_pred             EEEEecccC
Confidence            999999988

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.51  E-value=1e-14  Score=108.39  Aligned_cols=122  Identities=16%  Similarity=0.201  Sum_probs=87.7

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcc-c----------ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHE-A----------EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~-~----------~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      +..+.++.+.|-+.|.|.+.+.|++++...+ .          ..+..|+.+..+....++.+|.|.+++.+|+|.|+|.
T Consensus         6 ~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   85 (363)
T 1wio_A            6 GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICE   85 (363)
T ss_dssp             EETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEEEE
T ss_pred             EeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEEEEE
Confidence            4567788889988899999999999975311 1          2345566542100012477899999999999999999


Q ss_pred             EEEec-----------CCC-CCCCCCcEEEEEEeE---------Ee-------cCCcEEEEcccCCCCCeeeEEEEecCC
Q psy534           77 VVFLN-----------RSP-NSHKNGTWFHLDVHG---------VF-------NDGTELRISNIRSQDIGDYTCLATHVL  128 (145)
Q Consensus        77 ~~~~~-----------~~~-~~~~~g~~~~l~c~~---------~~-------~~~~~L~i~~v~~~d~G~Y~C~a~n~~  128 (145)
                      +.+..           .++ .....|+.+.|.|..         +.       .....|.|.+++.+|+|.|+|.|.|..
T Consensus        86 ~~n~~~~~~l~V~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~  165 (363)
T 1wio_A           86 VEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQ  165 (363)
T ss_dssp             ETTEEEEEEEEEEEEEESSCSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEEESSEEEECSBCGGGCEECEEEEEETT
T ss_pred             EEECCCcEEEEEEeCCCCCceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccccceEEEEeeCChhcCCEEEEEEecCC
Confidence            94321           122 234569999999982         11       123479999999999999999999986


Q ss_pred             C
Q psy534          129 Y  129 (145)
Q Consensus       129 g  129 (145)
                      +
T Consensus       166 ~  166 (363)
T 1wio_A          166 K  166 (363)
T ss_dssp             E
T ss_pred             C
Confidence            5

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.50  E-value=7.2e-14  Score=104.05  Aligned_cols=108  Identities=21%  Similarity=0.303  Sum_probs=80.2

Q ss_pred             hccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-------
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-------   82 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-------   82 (145)
                      .+.++.+.|-+.|.|.|.+.|++++... ..    +       .......|.|.+++.+|+|.|.|.+.+...       
T Consensus       221 ~G~~v~l~C~~~g~p~~~i~W~~~~~~~-~~----~-------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  288 (382)
T 1cs6_A          221 TGQMVTLECFAFGNPVPQIKWRKLDGSQ-TS----K-------WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR  288 (382)
T ss_dssp             TTCCEEEECEEEEESCCEEEEEECCSCC-SC----C-------CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CCCeEEEEEEEccCCCCEEEEEECCccc-cc----E-------EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEE
Confidence            4556777888889999999999987542 11    1       113478899999999999999999965320       


Q ss_pred             -----------CCC--CCCCCcEEEEEEeE---------Eec-------------CCcEEEEcccCCCCCeeeEEEEecC
Q psy534           83 -----------SPN--SHKNGTWFHLDVHG---------VFN-------------DGTELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus        83 -----------~~~--~~~~g~~~~l~c~~---------~~~-------------~~~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                                 .+.  ....|+.+.|.|..         +..             .+..|.|.+++.+|+|.|+|.|.|.
T Consensus       289 l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  368 (382)
T 1cs6_A          289 IIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENK  368 (382)
T ss_dssp             EEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEECCEEEECcCCcccCEEEEEEEEeC
Confidence                       111  13458999999981         000             1237999999999999999999999


Q ss_pred             CC
Q psy534          128 LY  129 (145)
Q Consensus       128 ~g  129 (145)
                      .|
T Consensus       369 ~G  370 (382)
T 1cs6_A          369 HG  370 (382)
T ss_dssp             TE
T ss_pred             CC
Confidence            98

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.50  E-value=8.2e-14  Score=97.50  Aligned_cols=113  Identities=12%  Similarity=0.116  Sum_probs=77.3

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCee--eEEEcccCCCCCEEEEEEEEEec----
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMA--SLNLTKIRESDQGWYECKVVFLN----   81 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~--sL~I~~v~~~D~G~Y~C~~~~~~----   81 (145)
                      ...+.++.+.|.+.+ +.+.+.|+|++..... .. .+...     .....  +|.|.+++.+|+|.|+|.+.+..    
T Consensus        20 v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~-~~-~~~~~-----~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~   91 (218)
T 1uct_A           20 IPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYR-EI-GRRLK-----FWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFR   91 (218)
T ss_dssp             EETTCCEEEEECCCT-TCSEEEEEEEETTEEE-EC-SEECC---------CCCEEEECSCCGGGCEEEEEEEEETTTEEE
T ss_pred             cCCCCCEEEEEEcCC-CCCEEEEEECCCcccc-cc-cccCC-----CCcceeeEEEEcccccccCEEEEEEEEcCCCcee
Confidence            455778888998877 6789999999754211 10 11110     01245  89999999999999999997631    


Q ss_pred             --------C-----CC------C-CCCCCcEEEEEEe---------EEe-------------cCCcEEEEcccCCCCCee
Q psy534           82 --------R-----SP------N-SHKNGTWFHLDVH---------GVF-------------NDGTELRISNIRSQDIGD  119 (145)
Q Consensus        82 --------~-----~~------~-~~~~g~~~~l~c~---------~~~-------------~~~~~L~i~~v~~~d~G~  119 (145)
                              +     .|      . ....|+.++|.|.         ...             .....|.|.+++.+|+|.
T Consensus        92 ~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~  171 (218)
T 1uct_A           92 YSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGI  171 (218)
T ss_dssp             ECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEE
T ss_pred             ecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccccccCCCccCEEEEccCCcccCEE
Confidence                    0     01      1 1245899999993         010             123579999999999999


Q ss_pred             eEEEEecCC
Q psy534          120 YTCLATHVL  128 (145)
Q Consensus       120 Y~C~a~n~~  128 (145)
                      |+|.|.|..
T Consensus       172 Y~C~a~n~~  180 (218)
T 1uct_A          172 YRCYGWYNR  180 (218)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEcCC
Confidence            999999853

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.50  E-value=5.9e-14  Score=96.15  Aligned_cols=114  Identities=11%  Similarity=0.038  Sum_probs=79.7

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec----C-
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN----R-   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~----~-   82 (145)
                      ...+.++.+.|.+.|.|. .+.|+|++.... .....+. .     .....+|.|.+++.+|+|.|+|.+.+..    . 
T Consensus        16 v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~-~~~~~~~-~-----~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~   87 (198)
T 1ugn_A           16 ITQGSPVTLRCQGGQETQ-EYRLYREKKTAP-WITRIPQ-E-----LVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSES   87 (198)
T ss_dssp             EETTCCEEEEEECCTTCC-CEEEEESSSCCH-HHHTSCH-H-----HHTTTEEEESSCCGGGCEEEEEEEEETTTEECCC
T ss_pred             ccCCCcEEEEEEecCCCc-EEEEEECCcccc-ccccccc-c-----CCcccEEEECCCCHHHCeEEEEEEECCCCCcccC
Confidence            456778889999988876 599999975421 1111100 0     1237889999999999999999997632    1 


Q ss_pred             ---------C-C-C---------CCCCCcEEEEEEeE--------E----------------ecC---CcEEEEcccCCC
Q psy534           83 ---------S-P-N---------SHKNGTWFHLDVHG--------V----------------FND---GTELRISNIRSQ  115 (145)
Q Consensus        83 ---------~-~-~---------~~~~g~~~~l~c~~--------~----------------~~~---~~~L~i~~v~~~  115 (145)
                               . + .         ....|+.+.|.|..        +                ...   ...|.|.+++.+
T Consensus        88 s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  167 (198)
T 1ugn_A           88 SDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPS  167 (198)
T ss_dssp             CCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEECSSCCSEEEEEEC------CEEEC------CCEEEEEECCCCTT
T ss_pred             CccEEEEEcccccCCccccCCccccCCCCcEEEEEecCCCCcEEEEEECCCccCCccccccccCCCcceeEEEecccCcc
Confidence                     0 0 1         12358899999981        0                011   157999999999


Q ss_pred             CCeeeEEEEecCCC
Q psy534          116 DIGDYTCLATHVLY  129 (145)
Q Consensus       116 d~G~Y~C~a~n~~g  129 (145)
                      |+|.|+|.|.|..+
T Consensus       168 D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          168 RRWWYRCYAYDSNS  181 (198)
T ss_dssp             SCEEEEEEEECTTS
T ss_pred             cCeEEEEEEEeCCC
Confidence            99999999999865

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.49  E-value=3.2e-13  Score=94.64  Aligned_cols=118  Identities=16%  Similarity=0.124  Sum_probs=81.2

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC-C-------------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP-T-------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWY   73 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~-~-------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   73 (145)
                      ...+..+.+-|- .+.|.+.+.|+++.. .             .....+.+|+.+..  ......+|.|.+++.+|+|.|
T Consensus        12 v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~L~I~~v~~~DsG~Y   88 (238)
T 2p1y_A           12 AVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR--PSQENFSLILELATPSQTSVY   88 (238)
T ss_dssp             EETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEEC--CSSSBCEEEESSCCGGGCEEE
T ss_pred             EeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEc--cCCceEEEEEecCCcccCeeE
Confidence            456777888898 678889999998621 0             00123455666532  123467899999999999999


Q ss_pred             EEEEEEec---------------C--CC------------C----C----CCCCcEEEEEEeE---------Eec-----
Q psy534           74 ECKVVFLN---------------R--SP------------N----S----HKNGTWFHLDVHG---------VFN-----  102 (145)
Q Consensus        74 ~C~~~~~~---------------~--~~------------~----~----~~~g~~~~l~c~~---------~~~-----  102 (145)
                      +|.+.+..               +  .+            .    +    ...|+.+.|.|..         ++.     
T Consensus        89 ~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~  168 (238)
T 2p1y_A           89 FCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGE  168 (238)
T ss_dssp             EEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTS
T ss_pred             EEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCC
Confidence            99996431               0  11            0    0    2348899999981         000     


Q ss_pred             ----------------------------CCcEEEEcccCCCCCeeeEEEEecCC
Q psy534          103 ----------------------------DGTELRISNIRSQDIGDYTCLATHVL  128 (145)
Q Consensus       103 ----------------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~  128 (145)
                                                  ....|.|.+++.+|+|.|+|.|.|..
T Consensus       169 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          169 GPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             CCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             CCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence                                        01269999999999999999999984

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.49  E-value=1.2e-13  Score=94.14  Aligned_cols=113  Identities=9%  Similarity=0.081  Sum_probs=78.2

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec---C--
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN---R--   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~---~--   82 (145)
                      ...+.++.+.|.+.+. .+.+.|+|++.... .... +.     .....+.+|.|.+++.+|+|.|+|.+.+..   .  
T Consensus        15 v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~-~~~~-~~-----~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s   86 (188)
T 1oll_A           15 VPKEKQVTICCQGNYG-AVEYQLHFEGSLFA-VDRP-KP-----PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPS   86 (188)
T ss_dssp             EETTCCEEEEEECCTT-CCEEEEEETTEEEE-EECC-SS-----CTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCC
T ss_pred             CCCCCCEEEEEecCCC-CCEEEEEECCCccc-cccc-cc-----CCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCC
Confidence            4457788889988764 46899999875321 1000 00     012347899999999999999999996421   0  


Q ss_pred             ------------CC------C-CCCCCcEEEEEEeE--------E-------------ecCCcEEEEcccCCCCCeeeEE
Q psy534           83 ------------SP------N-SHKNGTWFHLDVHG--------V-------------FNDGTELRISNIRSQDIGDYTC  122 (145)
Q Consensus        83 ------------~~------~-~~~~g~~~~l~c~~--------~-------------~~~~~~L~i~~v~~~d~G~Y~C  122 (145)
                                  .|      . ....|+.+.|.|..        .             ...+..|.|.+++.+|+|.|+|
T Consensus        87 ~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C  166 (188)
T 1oll_A           87 NLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRC  166 (188)
T ss_dssp             CCEEEEEESCSCCCEEEEESCSEEETTCEEEEEEECSSSCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEE
T ss_pred             CceEEEecccCCCCeEEECCCCccccCCEEEEEEEcCCCCCEEEEEECCccccccccCCCceeEEEECCCCcCCCcEEEE
Confidence                        01      1 12358999999981        0             1123479999999999999999


Q ss_pred             EEecCC
Q psy534          123 LATHVL  128 (145)
Q Consensus       123 ~a~n~~  128 (145)
                      .|.|..
T Consensus       167 ~a~n~~  172 (188)
T 1oll_A          167 FGSYNN  172 (188)
T ss_dssp             ECEEET
T ss_pred             EEEcCC
Confidence            999864

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.49  E-value=2.5e-13  Score=95.81  Aligned_cols=120  Identities=18%  Similarity=0.180  Sum_probs=83.6

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC--C--------------cccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP--T--------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~--~--------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      ...+.++.+.|-+.|.|  .+.+.||++..  .              .....+.+|+.+..+ ...+..+|.|.+++.+|
T Consensus        14 v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~v~~~D   92 (247)
T 2ghw_B           14 VQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRD-NSKNTLYLQMNSLRAED   92 (247)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEE-TTTTEEEEEECSCCGGG
T ss_pred             EecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEe-CCCCEEEEEECcCCHHH
Confidence            45677888899998887  67899998531  1              011235567776432 22446889999999999


Q ss_pred             CEEEEEEEEEe--c----------C--CC-------------C------C----CCCCcEEEEEEeE---------Eec-
Q psy534           70 QGWYECKVVFL--N----------R--SP-------------N------S----HKNGTWFHLDVHG---------VFN-  102 (145)
Q Consensus        70 ~G~Y~C~~~~~--~----------~--~~-------------~------~----~~~g~~~~l~c~~---------~~~-  102 (145)
                      +|.|+|.+.+.  .          +  .+             .      +    ...|+.+.|.|..         ++. 
T Consensus        93 ~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~  172 (247)
T 2ghw_B           93 TAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLAWYQQ  172 (247)
T ss_dssp             CEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEE
T ss_pred             CEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEEEEEE
Confidence            99999999653  0          0  10             0      0    2348899999981         111 


Q ss_pred             -C-----------------------------CcEEEEcccCCCCCeeeEEEEecCC
Q psy534          103 -D-----------------------------GTELRISNIRSQDIGDYTCLATHVL  128 (145)
Q Consensus       103 -~-----------------------------~~~L~i~~v~~~d~G~Y~C~a~n~~  128 (145)
                       .                             ...|.|.+++.+|+|.|+|.|.|..
T Consensus       173 ~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~  228 (247)
T 2ghw_B          173 KPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNW  228 (247)
T ss_dssp             CTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSS
T ss_pred             CCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCC
Confidence             0                             1249999999999999999999853

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.49  E-value=2.7e-13  Score=95.75  Aligned_cols=69  Identities=19%  Similarity=0.212  Sum_probs=49.8

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCc-----------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTH-----------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~-----------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      ...+.++.+-|-+.+.|.+.+.||++....           ....+.+|+....   .....+|.|.+++.+|+|.|+|.
T Consensus        16 v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~   92 (250)
T 3esu_F           16 ASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSG---SGTDYSLTISNLEQEDIGTYFCQ   92 (250)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeC---CCCEEEEEEccCChhhCEEEEEE
Confidence            456788899999999999999999864210           0122345654422   13467899999999999999999


Q ss_pred             EEE
Q psy534           77 VVF   79 (145)
Q Consensus        77 ~~~   79 (145)
                      +.+
T Consensus        93 ~~n   95 (250)
T 3esu_F           93 QGN   95 (250)
T ss_dssp             ECS
T ss_pred             Eee
Confidence            943

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.49  E-value=4.1e-13  Score=97.74  Aligned_cols=123  Identities=13%  Similarity=0.057  Sum_probs=80.2

Q ss_pred             cceeeEEeec-CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC--------
Q psy534           12 QMLSVGDFAD-DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR--------   82 (145)
Q Consensus        12 ~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~--------   82 (145)
                      ....+.|.+. |.|.|.+.|++++.....   ..+.....+........|.|.+++.+|.|.|.|.+.+...        
T Consensus       133 ~~~~~~C~~~~~~P~~~i~W~~~~~~~~~---~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~  209 (313)
T 4fqp_A          133 PVPMARCVSTGGRPPAQITWHSDLGGMPN---TSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTV  209 (313)
T ss_dssp             CEEEEEEEEEEEBSCCEEEEEETTCCEEE---EEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEE
T ss_pred             ceEEEEEEccCccCCcEEEeecCCccccc---cceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeee
Confidence            3445567665 789999999998754221   1111111000000135689999999999999999965321        


Q ss_pred             ------CC-------C--CCCCCcEEEEEEeE----------E-----------ecCCcEEEEcccCCCCCeeeEEEEec
Q psy534           83 ------SP-------N--SHKNGTWFHLDVHG----------V-----------FNDGTELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus        83 ------~~-------~--~~~~g~~~~l~c~~----------~-----------~~~~~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                            +|       .  ....|..+.|.|..          +           ...+..|.|.+++.+|+|.|+|.|.|
T Consensus       210 ~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  289 (313)
T 4fqp_A          210 NLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTN  289 (313)
T ss_dssp             ECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECCCSSCCEEEEEEEEEC
T ss_pred             ecccccCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCceEEeCCEEEECcCChhhCEEEEEEEEe
Confidence                  11       1  12347889999981          1           11235899999999999999999999


Q ss_pred             CCC-----CcEEEEeC
Q psy534          127 VLY-----PDLLVVLG  137 (145)
Q Consensus       127 ~~g-----~~~~v~~~  137 (145)
                      .+|     ..|.|..+
T Consensus       290 ~~G~~~~~~~l~V~~~  305 (313)
T 4fqp_A          290 ALGARQAELTVQVKEG  305 (313)
T ss_dssp             SSCEEEEEEEEEEECC
T ss_pred             CCCcEEEEEEEEEEeC
Confidence            999     44555433

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.49  E-value=9.4e-14  Score=98.92  Aligned_cols=130  Identities=17%  Similarity=0.160  Sum_probs=87.9

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCC-c-----------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPT-H-----------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~-~-----------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      ...+.++.+-|.+.+.|.+.+.||+.... .           ......+|+.+.. +......+|.|.+++.+|+|.|+|
T Consensus        15 v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~sL~I~~v~~~DsG~Y~C   93 (256)
T 3tf7_C           15 VSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEF-SKSDSSFHLRKASVHRSDSAVYFC   93 (256)
T ss_dssp             EETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEE-ETTTTEEEEEESSCCGGGCSEEEE
T ss_pred             ecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEE-cCCCCEEEEEECCCCcccCEEEEE
Confidence            45677888889998889999999984311 0           0011244555421 123457899999999999999999


Q ss_pred             EEEEec--------------CCC--------------------C----------CCCCCcEEEEEEeE--------Ee--
Q psy534           76 KVVFLN--------------RSP--------------------N----------SHKNGTWFHLDVHG--------VF--  101 (145)
Q Consensus        76 ~~~~~~--------------~~~--------------------~----------~~~~g~~~~l~c~~--------~~--  101 (145)
                      .+.+..              +.+                    .          ....|+.++|.|..        ++  
T Consensus        94 ~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~v~W~k~  173 (256)
T 3tf7_C           94 AVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNSHNYMYWYRQ  173 (256)
T ss_dssp             EEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSCCSEEEEEEE
T ss_pred             EEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCCceEEEEEEE
Confidence            996521              011                    0          01258999999971        00  


Q ss_pred             ---------------------------------cCCcEEEEcccCCCCCeeeEEEEecCCC-------CcEEEEeCe
Q psy534          102 ---------------------------------NDGTELRISNIRSQDIGDYTCLATHVLY-------PDLLVVLGS  138 (145)
Q Consensus       102 ---------------------------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g-------~~~~v~~~~  138 (145)
                                                       ....+|.|.+++.+|+|.|+|.|.|..|       ..|.|....
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~gt~l~v~~~~  250 (256)
T 3tf7_C          174 DTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEGSKLTVLELE  250 (256)
T ss_dssp             CTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEEEECCCEEEEEECGG
T ss_pred             CCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCccEECCCeEEEEEccc
Confidence                                             0112699999999999999999998755       666666543

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.48  E-value=2.3e-13  Score=96.54  Aligned_cols=69  Identities=20%  Similarity=0.252  Sum_probs=48.8

Q ss_pred             hhhccceeeEEeecCC--CccEEEEecCCC---Cc--------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEE
Q psy534            8 KSIFQMLSVGDFADDE--DIPVYIWYDSYP---TH--------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE   74 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~--p~p~~~w~k~~~---~~--------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   74 (145)
                      ...+.++.+-|.+.+.  |.+.+.|||+..   ..        ......+|+.+...   ....+|.|.+++.+|+|.|+
T Consensus        14 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~L~I~~v~~~DsG~Y~   90 (256)
T 3ux9_B           14 GAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKS---GTSASLAITGLQSEDEADYY   90 (256)
T ss_dssp             ECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEE---TTEEEEEECSCCGGGCEEEE
T ss_pred             EcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEcc---CCEEEEEECCCChhhCEEEE
Confidence            4567788889998876  788999998531   10        00113456655321   34678999999999999999


Q ss_pred             EEEEE
Q psy534           75 CKVVF   79 (145)
Q Consensus        75 C~~~~   79 (145)
                      |.+.+
T Consensus        91 C~~~~   95 (256)
T 3ux9_B           91 CQVRD   95 (256)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99975

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.48  E-value=1.9e-13  Score=95.04  Aligned_cols=120  Identities=13%  Similarity=0.134  Sum_probs=82.9

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC-Cc-----------------ccccccceEEEecCCCCCCeeeEEEcccCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP-TH-----------------EAEEYKGRISRVDKESPFGMASLNLTKIRE   67 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~-~~-----------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~   67 (145)
                      +..+..+.+-|.+.+.+  .+.+.||++.. ..                 ....+.+|+.+..+. ..++.+|.|.+++.
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~~L~I~~v~~   90 (222)
T 1q9r_B           12 VQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDN-SQSILYLQMNTLRA   90 (222)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEET-TTTEEEEEECSCCG
T ss_pred             EcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEEC-CCCeEEEEECcCCc
Confidence            45677888899988765  67899988531 10                 112356788775431 23478999999999


Q ss_pred             CCCEEEEEEEEEec------C---------------CC--------CCCCCCcEEEEEEeEE-----------ec-----
Q psy534           68 SDQGWYECKVVFLN------R---------------SP--------NSHKNGTWFHLDVHGV-----------FN-----  102 (145)
Q Consensus        68 ~D~G~Y~C~~~~~~------~---------------~~--------~~~~~g~~~~l~c~~~-----------~~-----  102 (145)
                      +|+|.|+|.+.+..      .               .|        .....|..+.|.|...           ..     
T Consensus        91 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  170 (222)
T 1q9r_B           91 EDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS  170 (222)
T ss_dssp             GGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             ccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecCCeEc
Confidence            99999999996521      0               01        0123588999999821           00     


Q ss_pred             ----------CC-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 ----------DG-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ----------~~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                                ++     ..|.|..+..+| |.|+|.|.|..|
T Consensus       171 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~  211 (222)
T 1q9r_B          171 GVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPAS  211 (222)
T ss_dssp             TEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGG
T ss_pred             ceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCC
Confidence                      11     146788888889 999999999987

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.48  E-value=7e-14  Score=96.42  Aligned_cols=119  Identities=16%  Similarity=0.123  Sum_probs=82.9

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCC---CCc--------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSY---PTH--------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~---~~~--------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      ...+.++.+.|.+.|.|.+.+.|||..   ...        ....+.+|+.+..   ...+.+|.|.+++.+|+|.|.|.
T Consensus        12 v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~   88 (213)
T 3mj8_L           12 VALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN---SGNMATLTISKAQAGDEADYYCQ   88 (213)
T ss_dssp             EETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE---ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe---cCCEEEEEECCCChhhCEEEEEE
Confidence            456778889999999999999999832   110        0111445665432   24578999999999999999999


Q ss_pred             EEEecC-------------------CCCC--------CCCCcEEEEEEeEE-----------ecC---------------
Q psy534           77 VVFLNR-------------------SPNS--------HKNGTWFHLDVHGV-----------FND---------------  103 (145)
Q Consensus        77 ~~~~~~-------------------~~~~--------~~~g~~~~l~c~~~-----------~~~---------------  103 (145)
                      +.+...                   +|..        ...|..+.|.|...           ..+               
T Consensus        89 ~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~  168 (213)
T 3mj8_L           89 SWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSK  168 (213)
T ss_dssp             EEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEE
T ss_pred             eccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCc
Confidence            965320                   1100        11489999999810           011               


Q ss_pred             --C-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 --G-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 --~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                        +     ..|.|..+..+|+|.|+|.|+|..+
T Consensus       169 ~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  201 (213)
T 3mj8_L          169 SDSKYMATSYLTMTADAWKSRNTFICKVTHGGN  201 (213)
T ss_dssp             ETTEEEEEEEEEEESHHHHSCSCEEEEEEETTE
T ss_pred             cCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCc
Confidence              1     2377888899999999999999986

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.48  E-value=1.6e-14  Score=108.30  Aligned_cols=113  Identities=19%  Similarity=0.199  Sum_probs=79.4

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEccc-CCCCCEEEEEEEEEecC-----
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKI-RESDQGWYECKVVFLNR-----   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v-~~~D~G~Y~C~~~~~~~-----   82 (145)
                      ..+.++.+.|-+.|.|.|.+.|+|++.. +......|..+       .+++|.|.++ +.+|+|.|+|.|.+...     
T Consensus        21 ~eg~~v~L~C~~~g~P~p~i~W~k~g~~-l~~~~~~~~~~-------~~g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~   92 (384)
T 3kld_A           21 SEEKKVKLSCEVKGNPKPHIRWKLNGTD-VDIGMDFRYSV-------VDGSLLINNPNKTQDAGTYQCIATNSFGTIVSR   92 (384)
T ss_dssp             CSCSEEEECCEEEEESCCEEEEEETTEE-CCC----CEEE-------ETTEEEEESCCHHHHCEEEEEEEEETTEEEECC
T ss_pred             CCCCeEEEEeEecCCCCCEEEEEECCEE-CcCCCCccEEE-------ECCEEEEcCCCCcccCEEEEEEEEcCcccEEec
Confidence            4567788889999999999999999853 22222234433       1567888776 88999999999976420     


Q ss_pred             ---------CC------C--CCCCCcEEEEEEeE----------E---------------ecCCcEEEEcccCCCCCeee
Q psy534           83 ---------SP------N--SHKNGTWFHLDVHG----------V---------------FNDGTELRISNIRSQDIGDY  120 (145)
Q Consensus        83 ---------~~------~--~~~~g~~~~l~c~~----------~---------------~~~~~~L~i~~v~~~d~G~Y  120 (145)
                               +.      .  ....|+.+.|.|..          +               ......|.|.+++.+|+|.|
T Consensus        93 ~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  172 (384)
T 3kld_A           93 EAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNY  172 (384)
T ss_dssp             CEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTCCEEESSCCGGGCEEE
T ss_pred             ceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCCcEEEeecCHHHCceE
Confidence                     00      0  12248888898941          0               01224799999999999999


Q ss_pred             EEEEecCCC
Q psy534          121 TCLATHVLY  129 (145)
Q Consensus       121 ~C~a~n~~g  129 (145)
                      +|.|.|..+
T Consensus       173 ~C~a~n~~~  181 (384)
T 3kld_A          173 TCVVTNTVT  181 (384)
T ss_dssp             EEEEEETTT
T ss_pred             EEEEecccc
Confidence            999999886

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.47  E-value=1.3e-13  Score=98.92  Aligned_cols=113  Identities=15%  Similarity=0.098  Sum_probs=79.9

Q ss_pred             hhccceeeEEeecCCCccE-EEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec------
Q psy534            9 SIFQMLSVGDFADDEDIPV-YIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN------   81 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~-~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~------   81 (145)
                      ..+.++.+.|.+.+.+.+. +.|++.+...+.  ...+..+.      .+++|.|.+++.+|+|.|+|.+.+..      
T Consensus       102 ~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~  173 (289)
T 3ejj_X          102 VEGQEAVLPCLITDPALKDSVSLMREGGRQVL--RKTVYFFS------PWRGFIIRKAKVLDSNTYVCKTMVNGRESTST  173 (289)
T ss_dssp             ETTSCEEECEEESCGGGGGSEEEEEGGGEECC--TTCCEEEE------TTTEEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             ecCCceEeEEEccCCCcceEEEEEecCCeecC--CCccEEEC------CCCCEEEeecccccCEEEEEEEEeCCCccccc
Confidence            3466778889988877665 999865433221  22344442      26779999999999999999996321      


Q ss_pred             -----C------CC------CC--CCCCcEEEEEEeEE----------ec-------------------CCcEEEEcccC
Q psy534           82 -----R------SP------NS--HKNGTWFHLDVHGV----------FN-------------------DGTELRISNIR  113 (145)
Q Consensus        82 -----~------~~------~~--~~~g~~~~l~c~~~----------~~-------------------~~~~L~i~~v~  113 (145)
                           +      +|      ..  ...|..+.|.|...          ..                   ....|.|.+++
T Consensus       174 ~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~  253 (289)
T 3ejj_X          174 GIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVD  253 (289)
T ss_dssp             CEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCC
T ss_pred             cEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeec
Confidence                 0      11      01  23599999999811          00                   02479999999


Q ss_pred             CCCCeeeEEEEecCCC
Q psy534          114 SQDIGDYTCLATHVLY  129 (145)
Q Consensus       114 ~~d~G~Y~C~a~n~~g  129 (145)
                      .+|+|.|+|.|.|..|
T Consensus       254 ~~d~G~Y~C~a~N~~G  269 (289)
T 3ejj_X          254 FQDAGIYSCVASNDVG  269 (289)
T ss_dssp             SSSCEEEEEEEECSSC
T ss_pred             ccCCEEEEEEEEcCCC
Confidence            9999999999999999

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.47  E-value=1.3e-13  Score=105.22  Aligned_cols=121  Identities=12%  Similarity=0.009  Sum_probs=78.0

Q ss_pred             hhccceeeEEeecC-CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec------
Q psy534            9 SIFQMLSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN------   81 (145)
Q Consensus         9 ~~~~~~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~------   81 (145)
                      ..+.++.+.|-+.| .|.|.+.|++++........................+|.|.+++.+|+|.|.|.|.+..      
T Consensus       240 ~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~~~~~~L  319 (423)
T 3qs7_E          240 KVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALV  319 (423)
T ss_dssp             ETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTEEEEEEEE
T ss_pred             eCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecCCCceEEE
Confidence            35667888999998 67899999999864322111000111110001225679999999999999999995431      


Q ss_pred             -C--C------C----CCCCCCcEEEEEEeE---------EecCC-------------cEEEEcccCCCCCeeeEEEEec
Q psy534           82 -R--S------P----NSHKNGTWFHLDVHG---------VFNDG-------------TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus        82 -~--~------~----~~~~~g~~~~l~c~~---------~~~~~-------------~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                       +  +      +    .....|+.+.|.|..         +..++             ..+.+..+..+|+|.|+|.|+|
T Consensus       320 ~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~N  399 (423)
T 3qs7_E          320 TIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAEN  399 (423)
T ss_dssp             EEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEE
T ss_pred             EEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccccCCcEEEEEecccccCEEEEEEEEc
Confidence             0  1      1    113458999999981         11122             1222366778999999999999


Q ss_pred             CCC
Q psy534          127 VLY  129 (145)
Q Consensus       127 ~~g  129 (145)
                      ..|
T Consensus       400 ~~G  402 (423)
T 3qs7_E          400 DDA  402 (423)
T ss_dssp             TTE
T ss_pred             CCc
Confidence            998

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.47  E-value=2.3e-13  Score=93.74  Aligned_cols=119  Identities=17%  Similarity=0.178  Sum_probs=82.6

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC-Ccc----------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP-THE----------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~-~~~----------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      ...+..+.+.|.+.|.|.+.+.||++.. ...          ...+.+|+.+..   ..+..+|.|.+++.+|+|.|.|.
T Consensus        12 v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~   88 (210)
T 1lk3_L           12 VSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG---SGTDFTLTIDPVEADDTAIYFCQ   88 (210)
T ss_dssp             ECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEe---cCCEEEEEECCCCHHHCeEEEEE
Confidence            4567788999999999888999998531 110          123446666532   13467999999999999999999


Q ss_pred             EEEec-----------C-----CCCC--------CCCCcEEEEEEeEE-----------e------c-------------
Q psy534           77 VVFLN-----------R-----SPNS--------HKNGTWFHLDVHGV-----------F------N-------------  102 (145)
Q Consensus        77 ~~~~~-----------~-----~~~~--------~~~g~~~~l~c~~~-----------~------~-------------  102 (145)
                      +.+..           +     +|..        ...|..+.|.|...           .      .             
T Consensus        89 ~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~  168 (210)
T 1lk3_L           89 QSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSK  168 (210)
T ss_dssp             ECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTT
T ss_pred             EEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCC
Confidence            95421           0     1110        12388999999810           0      0             


Q ss_pred             CC-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 DG-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ~~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ++     ..|.|..+..+|+|.|+|.|.|...
T Consensus       169 ~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  200 (210)
T 1lk3_L          169 DSTYSMSSTLSLTKADYESHNLYTCEVVHKTS  200 (210)
T ss_dssp             TCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             CCCEEEEEEEEEChHHhccCCcEEEEEEecCC
Confidence            11     1588999999999999999999865

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.46  E-value=4.9e-13  Score=92.40  Aligned_cols=112  Identities=12%  Similarity=0.177  Sum_probs=78.0

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec-------
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN-------   81 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-------   81 (145)
                      ..+..+.+.|.+.|.|.|.+.|++....    ...++....     ..+++|.|.+++.+|+|.|.|.+.+..       
T Consensus        14 ~~G~~v~L~C~~~g~P~p~i~W~~~~~~----~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~   84 (202)
T 1vca_A           14 QIGDSVSLTCSTTGCESPFFSWRTQIDS----PLNGKVTNE-----GTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGI   84 (202)
T ss_dssp             ETTSCEEEEEEEESCSSCEEEEEETTCC----CCSSEEEEE-----TTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEE
T ss_pred             cCCCcEEEEEeecCCCCCeEEEECCCCC----CccceEEEc-----CCccEEEECcCCHHHCEEEEEEEEECCceEeeEE
Confidence            4677899999999999999999885322    112333221     236789999999999999999996532       


Q ss_pred             ---C--CC--------CCCCCCcEEEEEEeE------------EecCC---------------------cEEEEcccCCC
Q psy534           82 ---R--SP--------NSHKNGTWFHLDVHG------------VFNDG---------------------TELRISNIRSQ  115 (145)
Q Consensus        82 ---~--~~--------~~~~~g~~~~l~c~~------------~~~~~---------------------~~L~i~~v~~~  115 (145)
                         +  +|        .....|+.+.|.|..            +..++                     ..|.|..+..+
T Consensus        85 ~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d  164 (202)
T 1vca_A           85 QVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIED  164 (202)
T ss_dssp             EEEEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGG
T ss_pred             EEEEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeecc
Confidence               1  12        113458999999981            00011                     12456666777


Q ss_pred             CCeeeEEEEecCCC
Q psy534          116 DIGDYTCLATHVLY  129 (145)
Q Consensus       116 d~G~Y~C~a~n~~g  129 (145)
                      |.|.|+|.|.|.+|
T Consensus       165 ~~g~ytC~A~n~~~  178 (202)
T 1vca_A          165 IGKVLVCRAKLHID  178 (202)
T ss_dssp             TTCEEEEEEEECSC
T ss_pred             CCCeEEEEEEcccc
Confidence            88999999999887

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.46  E-value=1e-12  Score=94.19  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=83.5

Q ss_pred             hhhccceeeEEeecCCC-ccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC----
Q psy534            8 KSIFQMLSVGDFADDED-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR----   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~----   82 (145)
                      ...+.++.+.|-+.|.| .+.+.|++.++..+. ....|+.+...  .....+|.|.+++.+|+|.|+|.+.+...    
T Consensus        14 v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~-~~~~~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~   90 (291)
T 1qz1_A           14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS-PNQQRISVVWN--DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE   90 (291)
T ss_dssp             EETTCCEEEEEEESSCCSCCEEEEECTTSCBCC-SSCSSEEEEEE--ETTEEEEEECSCCGGGCEEEEEEEECTTSCEEE
T ss_pred             EeCCCeEEEEEEeCCCCCCcEeEEECCCCeECc-cCCceEEEEEc--CCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeE
Confidence            34677889999999876 799999994322222 12344444321  12478999999999999999999965320    


Q ss_pred             ---------C------CC--CCCCCcEEEEEEeE---------E----------------ecCCcEEEEcccCCCCCeee
Q psy534           83 ---------S------PN--SHKNGTWFHLDVHG---------V----------------FNDGTELRISNIRSQDIGDY  120 (145)
Q Consensus        83 ---------~------~~--~~~~g~~~~l~c~~---------~----------------~~~~~~L~i~~v~~~d~G~Y  120 (145)
                               +      +.  ....|+.+.|.|..         +                ...+..|.|.+++.+|+|.|
T Consensus        91 ~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  170 (291)
T 1qz1_A           91 ATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTY  170 (291)
T ss_dssp             EEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEE
T ss_pred             EEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEEccCccccCeEE
Confidence                     1      11  12458899999981         0                11234799999999999999


Q ss_pred             EEEEecCCC
Q psy534          121 TCLATHVLY  129 (145)
Q Consensus       121 ~C~a~n~~g  129 (145)
                      +|.|.|..+
T Consensus       171 ~C~a~n~~~  179 (291)
T 1qz1_A          171 RCEGRILAR  179 (291)
T ss_dssp             EEEEEEGGG
T ss_pred             EEEEEecCC
Confidence            999999764

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.45  E-value=4.2e-13  Score=97.46  Aligned_cols=111  Identities=20%  Similarity=0.228  Sum_probs=80.4

Q ss_pred             hccceeeEEee------cCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE-Eec-
Q psy534           10 IFQMLSVGDFA------DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV-FLN-   81 (145)
Q Consensus        10 ~~~~~~~~~w~------~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~-~~~-   81 (145)
                      .+..+.+.|-+      .|.|.|.+.|++++......  ..++..       .+.+|.|.+++.+|+|.|.|.+. +.. 
T Consensus       117 ~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~--~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~~n~~g  187 (315)
T 1itb_B          117 VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD--NIHFSG-------VKDRLIVMNVAEKHRGNYTCHASYTYLG  187 (315)
T ss_dssp             TTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCC--SSSEEE-------ETTEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             cCCCeEEEEecccccccCCCCCCEEEEEECCEECCCc--cceEee-------cCceEEEEeceehhCcEEEEEEEcCCCC
Confidence            45677788887      78999999999998542211  122222       26689999999999999999997 321 


Q ss_pred             -------------------CCC------C---CCCCCcEEEEEEeE---------Ee------cC---------------
Q psy534           82 -------------------RSP------N---SHKNGTWFHLDVHG---------VF------ND---------------  103 (145)
Q Consensus        82 -------------------~~~------~---~~~~g~~~~l~c~~---------~~------~~---------------  103 (145)
                                         .+|      .   ....|+.+.|.|..         +.      ..               
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~  267 (315)
T 1itb_B          188 KQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP  267 (315)
T ss_dssp             EEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCS
T ss_pred             cEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeecc
Confidence                               011      1   13458899999981         00      00               


Q ss_pred             --------CcEEEEcccCCCC-CeeeEEEEecCCC
Q psy534          104 --------GTELRISNIRSQD-IGDYTCLATHVLY  129 (145)
Q Consensus       104 --------~~~L~i~~v~~~d-~G~Y~C~a~n~~g  129 (145)
                              ...|.|.+++.+| +|.|+|.|.|..|
T Consensus       268 ~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G  302 (315)
T 1itb_B          268 ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG  302 (315)
T ss_dssp             SCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTC
T ss_pred             CCCceeEEEEEEEEeecCHHHcCCceEEEEecCCC
Confidence                    1279999999999 9999999999999

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.45  E-value=5.1e-13  Score=94.35  Aligned_cols=129  Identities=13%  Similarity=0.051  Sum_probs=87.2

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC---Cc--c------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP---TH--E------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~~--~------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      ....+..+.+.|.+.+.|.+.+.||++..   ..  +      ...+.+|+.+..   .....+|.|.+++.+|+|.|+|
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y~C   88 (242)
T 2znx_A           12 SVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSG---SGTDFTLSINSVETEDFGMYFC   88 (242)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE---ETTEEEEEESSCCGGGCEEEEE
T ss_pred             EEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEec---CCCEEEEEECCCChHHCEEEEE
Confidence            34567888999999999889999998641   10  0      012345666532   1346789999999999999999


Q ss_pred             EEEEec-----------C--CC---------------------CCCCCCcEEEEEEeEE-----------ec--------
Q psy534           76 KVVFLN-----------R--SP---------------------NSHKNGTWFHLDVHGV-----------FN--------  102 (145)
Q Consensus        76 ~~~~~~-----------~--~~---------------------~~~~~g~~~~l~c~~~-----------~~--------  102 (145)
                      .+.+..           +  ++                     .....|+.+.|.|...           +.        
T Consensus        89 ~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~  168 (242)
T 2znx_A           89 QQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLE  168 (242)
T ss_dssp             EECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEE
T ss_pred             eEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcE
Confidence            985421           0  11                     0123588999999821           00        


Q ss_pred             -------C--------------------C--cEEEEcccCCCCCeeeEEEEecC--CC--CcEEEEeCe
Q psy534          103 -------D--------------------G--TELRISNIRSQDIGDYTCLATHV--LY--PDLLVVLGS  138 (145)
Q Consensus       103 -------~--------------------~--~~L~i~~v~~~d~G~Y~C~a~n~--~g--~~~~v~~~~  138 (145)
                             +                    +  .+|.|.+++.+|+|.|+|.|.|.  +|  ..+.|...-
T Consensus       169 ~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~fG~gt~l~v~~~~  237 (242)
T 2znx_A          169 YMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDGDYXGQGTLVTVSAAH  237 (242)
T ss_dssp             EEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTSSCBCCCEEEEECCC-
T ss_pred             EEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCCcccCCCeEEEEEecc
Confidence                   0                    0  26999999999999999999984  34  555554433

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.45  E-value=5e-13  Score=96.22  Aligned_cols=117  Identities=15%  Similarity=0.220  Sum_probs=81.8

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCC----cc-------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPT----HE-------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~----~~-------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      ...+..+.+.|.+.+.|.+.+.||++...    .+       ...+.+|+.+..   .....+|.|.+++.+|+|.|+|.
T Consensus        24 v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~DsG~Y~C~  100 (276)
T 3auv_A           24 ASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG---SGTDFTLTISSLQPEDFATYYCQ  100 (276)
T ss_dssp             CCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEec---cCCeEEEEEccCChhhCEEEEEE
Confidence            45677888899999998899999986421    00       012345666532   13467899999999999999999


Q ss_pred             EEEec-----------C--CCC----------------------CCCCCcEEEEEEeEE-----------ecC-------
Q psy534           77 VVFLN-----------R--SPN----------------------SHKNGTWFHLDVHGV-----------FND-------  103 (145)
Q Consensus        77 ~~~~~-----------~--~~~----------------------~~~~g~~~~l~c~~~-----------~~~-------  103 (145)
                      +.+..           +  .+.                      ....|+.+.|.|...           +..       
T Consensus       101 ~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~  180 (276)
T 3auv_A          101 QHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLE  180 (276)
T ss_dssp             ECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEE
T ss_pred             EecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcE
Confidence            95421           1  110                      013488999999820           000       


Q ss_pred             -------------------------------CcEEEEcccCCCCCeeeEEEEecC
Q psy534          104 -------------------------------GTELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       104 -------------------------------~~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                                                     ...|.|.+++.+|+|.|+|.|.|.
T Consensus       181 ~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          181 WVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             EEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence                                           016999999999999999999997

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.45  E-value=3.5e-13  Score=97.64  Aligned_cols=116  Identities=19%  Similarity=0.187  Sum_probs=78.3

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCC-CCCEEEEEEEEEecC-----
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRE-SDQGWYECKVVFLNR-----   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~-~D~G~Y~C~~~~~~~-----   82 (145)
                      ..+.++.+.|-+.|.|.|.+.|++++.....    .|...... ......+|.|.+++. +|+|.|+|.+.+...     
T Consensus        19 ~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~----~~~~~~~~-~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~   93 (304)
T 2yd9_A           19 VSGGVASFVCQATGDPKPRVTWNKKGKKVNS----QRFETIEF-DESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVH   93 (304)
T ss_dssp             ETTSCEEEEEEEECSSCCEEEEC-------C----TTEEEEEE-TTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCE
T ss_pred             cCCCeEEEEEEEEEeCCCeEEEEECCEECCC----CceEEEEe-cCCCceEEEEecccccCCCeEEEEEEECCCCeEEEE
Confidence            4567888999999999999999999854321    23332210 011247899999998 999999999964320     


Q ss_pred             -----------C---CC--------CCCCCcEEEEEEeE---------E-----------------ecCCcEEEEcccCC
Q psy534           83 -----------S---PN--------SHKNGTWFHLDVHG---------V-----------------FNDGTELRISNIRS  114 (145)
Q Consensus        83 -----------~---~~--------~~~~g~~~~l~c~~---------~-----------------~~~~~~L~i~~v~~  114 (145)
                                 +   +.        ....|+.+.|.|..         +                 ......|.|.+++.
T Consensus        94 ~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  173 (304)
T 2yd9_A           94 AKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEE  173 (304)
T ss_dssp             EEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECTTSCEEECSCCG
T ss_pred             EEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCCCeEEEEccCCc
Confidence                       0   10        01248899999981         0                 11223799999999


Q ss_pred             CCCeeeEEEEecCCC
Q psy534          115 QDIGDYTCLATHVLY  129 (145)
Q Consensus       115 ~d~G~Y~C~a~n~~g  129 (145)
                      +|+|.|+|.|.|..|
T Consensus       174 ~d~G~Y~C~a~n~~g  188 (304)
T 2yd9_A          174 TDQGKYECVATNSAG  188 (304)
T ss_dssp             GGCEEEEEEEEETTE
T ss_pred             ccCEEEEEEEEeCCC
Confidence            999999999999987

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.45  E-value=8e-13  Score=93.32  Aligned_cols=107  Identities=21%  Similarity=0.236  Sum_probs=79.6

Q ss_pred             hhccceeeEEee-cCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec------
Q psy534            9 SIFQMLSVGDFA-DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN------   81 (145)
Q Consensus         9 ~~~~~~~~~~w~-~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~------   81 (145)
                      ..+.++.+.|.+ .+.|.+.+.|++++...         ...     .....|.|.+++.+|+|.|.|.+.+..      
T Consensus        95 ~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~---------~~~-----~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~  160 (262)
T 3rjd_A           95 TEGEPLALRCHAWKDKLVYNVLYYRNGKAF---------KFF-----HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAG  160 (262)
T ss_dssp             ETTSCEEEEEEEGGGCCCEEEEEEETTEEE---------EEE-----EECCCEEESSCCGGGCEEEEEEEESSSEEEEEC
T ss_pred             ecCCeEEEEEEccCCCCCceEEEEECCccc---------ccc-----CCCCeEEEEECChhhCEEEEEEEeCCCCccccc
Confidence            356778889999 58899999999987431         110     126789999999999999999995422      


Q ss_pred             ----C-----CC------C-CCCCCcEEEEEEeEE-----------e------------cCCcEEEEcccCCCCCeeeEE
Q psy534           82 ----R-----SP------N-SHKNGTWFHLDVHGV-----------F------------NDGTELRISNIRSQDIGDYTC  122 (145)
Q Consensus        82 ----~-----~~------~-~~~~g~~~~l~c~~~-----------~------------~~~~~L~i~~v~~~d~G~Y~C  122 (145)
                          +     ++      . ....|+.+.|.|...           +            .....|.|.+++.+|+|.|+|
T Consensus       161 ~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  240 (262)
T 3rjd_A          161 ISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWC  240 (262)
T ss_dssp             EEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEEESCCEEEESSCCGGGCEEEEE
T ss_pred             eEEEeccCCCCCeEeecCceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEecccCCCceEEEEEechhhCeEEEE
Confidence                0     11      1 123588999999820           0            123478999999999999999


Q ss_pred             EEecCCC
Q psy534          123 LATHVLY  129 (145)
Q Consensus       123 ~a~n~~g  129 (145)
                      .|.|..|
T Consensus       241 ~a~n~~G  247 (262)
T 3rjd_A          241 EAATEDG  247 (262)
T ss_dssp             EEEETTS
T ss_pred             EEEcccC
Confidence            9999998

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.45  E-value=9e-14  Score=99.82  Aligned_cols=112  Identities=13%  Similarity=0.090  Sum_probs=77.9

Q ss_pred             hhccceeeEEeecCCCc--cEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec-----
Q psy534            9 SIFQMLSVGDFADDEDI--PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN-----   81 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~--p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-----   81 (145)
                      ..+.++.+.|-+.+ |.  +.+.|++++...+.  ...+..+      ..+..|.|.+++.+|+|.|+|.+.+..     
T Consensus       102 ~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~--~~~~~~~------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s  172 (292)
T 4dkd_C          102 FEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLM--RHTNYSF------SPWHGFTIHRAKFIQSQDYQCSALMGGRKVMS  172 (292)
T ss_dssp             ETTSCEECCEEESS-GGGGSSEEEEEGGGCCCC--SSCCEEC------CSSSCCEETTCCGGGCSEEEEEECSTTSCEEC
T ss_pred             cCCCcEEEeeeCCC-CCcceeEEEEecCCCccc--cCCcccc------cCCceEEECCCCHHHCeEEEEEEEeCCCceeE
Confidence            34567778888887 44  78999987433221  1223333      225569999999999999999995321     


Q ss_pred             ------C------CC------C--CCCCCcEEEEEEeEE----------ecC-------------------CcEEEEccc
Q psy534           82 ------R------SP------N--SHKNGTWFHLDVHGV----------FND-------------------GTELRISNI  112 (145)
Q Consensus        82 ------~------~~------~--~~~~g~~~~l~c~~~----------~~~-------------------~~~L~i~~v  112 (145)
                            +      +|      .  ....|+.+.|.|...          ..+                   ...|.|.++
T Consensus       173 ~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v  252 (292)
T 4dkd_C          173 ISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQV  252 (292)
T ss_dssp             CCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSC
T ss_pred             EEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECcc
Confidence                  0      11      0  124699999999820          000                   127999999


Q ss_pred             CCCCCeeeEEEEecCCC
Q psy534          113 RSQDIGDYTCLATHVLY  129 (145)
Q Consensus       113 ~~~d~G~Y~C~a~n~~g  129 (145)
                      +.+|+|.|+|.|.|..|
T Consensus       253 ~~~d~G~Y~C~a~N~~g  269 (292)
T 4dkd_C          253 DFQHAGNYSCVASNVQG  269 (292)
T ss_dssp             CTTSCEEEEEEEECSSC
T ss_pred             ChhcCeEEEEEEecCCC
Confidence            99999999999999999

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.45  E-value=4.6e-13  Score=95.03  Aligned_cols=130  Identities=13%  Similarity=0.194  Sum_probs=86.0

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCC-CC---------------cccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSY-PT---------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~-~~---------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      ...+..+.+-|.+.|.+  .+.+.||+.. ..               .....+.+|+.+..+ ......+|.|.+++.+|
T Consensus        13 v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~v~~~D   91 (253)
T 3uzq_A           13 VKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITAD-TSSNTAYLHLSSLTSGD   91 (253)
T ss_dssp             ECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEE-TTTTEEEEEECSCCGGG
T ss_pred             ecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEee-cCCCeEEEEeCCCCccc
Confidence            45677888889888754  6788998832 11               111234567766432 22346779999999999


Q ss_pred             CEEEEEEEEEec-----------CCC---------------C----------CCCCCcEEEEEEeE-----E--------
Q psy534           70 QGWYECKVVFLN-----------RSP---------------N----------SHKNGTWFHLDVHG-----V--------  100 (145)
Q Consensus        70 ~G~Y~C~~~~~~-----------~~~---------------~----------~~~~g~~~~l~c~~-----~--------  100 (145)
                      +|.|+|.+.+..           +..               .          ....|+.+.|.|..     .        
T Consensus        92 sG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W  171 (253)
T 3uzq_A           92 TAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYGNSFMHW  171 (253)
T ss_dssp             CEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEE
T ss_pred             CEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCCCcEEEE
Confidence            999999995411           010               0          12359999999971     0        


Q ss_pred             ecC-------------------------------CcEEEEcccCCCCCeeeEEEEecCCC------CcEEEEeCe
Q psy534          101 FND-------------------------------GTELRISNIRSQDIGDYTCLATHVLY------PDLLVVLGS  138 (145)
Q Consensus       101 ~~~-------------------------------~~~L~i~~v~~~d~G~Y~C~a~n~~g------~~~~v~~~~  138 (145)
                      +..                               ..+|.|.+++.+|+|.|+|.|.|..+      ..|.|....
T Consensus       172 ~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~~  246 (253)
T 3uzq_A          172 YQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIKRPL  246 (253)
T ss_dssp             EEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCC-
T ss_pred             EEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcCCC
Confidence            000                               01499999999999999999998543      666665544

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.44  E-value=1.4e-13  Score=95.17  Aligned_cols=119  Identities=17%  Similarity=0.159  Sum_probs=80.3

Q ss_pred             hhhccceeeEEeecCC-CccEEEEecCC---CC------------cccccccceEEEecCCCCCCeeeEEEcccCCCCCE
Q psy534            8 KSIFQMLSVGDFADDE-DIPVYIWYDSY---PT------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQG   71 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~-p~p~~~w~k~~---~~------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G   71 (145)
                      +..+.++.+-|.+.+. |.+.+.|||..   ..            .....+.+|+.+..   ..++++|.|.+++.+|+|
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G   88 (218)
T 3s96_B           12 FSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS---SGADRYLSISNIQPEDEA   88 (218)
T ss_dssp             EETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE---ETTEEEEEESSCCGGGCE
T ss_pred             ECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec---CCceEEEEEccCCcccCE
Confidence            3457788889999888 88999999832   11            11223445666542   245788999999999999


Q ss_pred             EEEEEEEEec---------------C--CC-C-C----------CCCCcEEEEEEeE-----------EecCC-------
Q psy534           72 WYECKVVFLN---------------R--SP-N-S----------HKNGTWFHLDVHG-----------VFNDG-------  104 (145)
Q Consensus        72 ~Y~C~~~~~~---------------~--~~-~-~----------~~~g~~~~l~c~~-----------~~~~~-------  104 (145)
                      .|+|.+.+..               +  .+ . +          ...+..+.|.|..           +..++       
T Consensus        89 ~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~  168 (218)
T 3s96_B           89 IYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGV  168 (218)
T ss_dssp             EEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC----
T ss_pred             EEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcCce
Confidence            9999996532               0  00 0 0          0126789999981           01111       


Q ss_pred             ---------------cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 ---------------TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ---------------~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                                     ..|.|.....+|+|.|+|.|+|..+
T Consensus       169 ~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~  208 (218)
T 3s96_B          169 DTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGD  208 (218)
T ss_dssp             ----------CEEEEEEEEEEHHHHHTCSCEEEEEEETTE
T ss_pred             ecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCC
Confidence                           1266677777789999999999976

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.44  E-value=3.6e-13  Score=95.73  Aligned_cols=130  Identities=17%  Similarity=0.159  Sum_probs=84.9

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC-C---------------cccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP-T---------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~-~---------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      ...+.++.+-|-+.|.+  .+.+.||+... .               .....+.+|+.+..+ ......+|.|.+++.+|
T Consensus        14 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~v~~~D   92 (256)
T 3umt_A           14 VKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVD-KSSSTAYLELRSLTSED   92 (256)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEE-GGGTEEEEEECSCCGGG
T ss_pred             EcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEe-cCCCEEEEEECCCCccc
Confidence            45677788888888765  67888987431 1               011234567766432 12336679999999999


Q ss_pred             CEEEEEEEEEe----c----------CCC----------------C----------CCCCCcEEEEEEeE---------E
Q psy534           70 QGWYECKVVFL----N----------RSP----------------N----------SHKNGTWFHLDVHG---------V  100 (145)
Q Consensus        70 ~G~Y~C~~~~~----~----------~~~----------------~----------~~~~g~~~~l~c~~---------~  100 (145)
                      +|.|+|.+.+.    .          +..                .          ....|+.++|.|..         +
T Consensus        93 sG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W  172 (256)
T 3umt_A           93 SAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGSNLNW  172 (256)
T ss_dssp             CEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTTCEEE
T ss_pred             CEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCcEEEE
Confidence            99999999654    0          010                1          02349999999981         1


Q ss_pred             ec-------------------------------CCcEEEEcccCCCCCeeeEEEEecCC------CCcEEEEeCe
Q psy534          101 FN-------------------------------DGTELRISNIRSQDIGDYTCLATHVL------YPDLLVVLGS  138 (145)
Q Consensus       101 ~~-------------------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~------g~~~~v~~~~  138 (145)
                      +.                               ...+|.|.+++.+|+|.|+|.|.|..      |..|.|....
T Consensus       173 ~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~~  247 (256)
T 3umt_A          173 LQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRAA  247 (256)
T ss_dssp             EEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             EEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECCC
Confidence            00                               01139999999999999999999853      2666665544

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.44  E-value=8.1e-13  Score=94.09  Aligned_cols=130  Identities=17%  Similarity=0.208  Sum_probs=88.8

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC---Cc-c-----------cccccceEEEecCCCCCCeeeEEEcccCCCCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP---TH-E-----------AEEYKGRISRVDKESPFGMASLNLTKIRESDQ   70 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~---~~-~-----------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   70 (145)
                      ...+..+.+.|-+.|.|  .+.+.||++..   .. +           ...+.+|+.+..+ ...+..+|.|.+++.+|+
T Consensus        12 v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~~Ds   90 (257)
T 1f3r_B           12 VRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRD-TSKNQVFLKMNSLQTDDT   90 (257)
T ss_dssp             ECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEE-TTTTEEEEEEESCCTTCC
T ss_pred             ccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEE-CCCCEEEEEECCCCcccC
Confidence            45677889999998875  68899998631   10 0           1224567776432 224578999999999999


Q ss_pred             EEEEEEEEEec-------------------C--CC-------------C----------CCCCCcEEEEEEeE-------
Q psy534           71 GWYECKVVFLN-------------------R--SP-------------N----------SHKNGTWFHLDVHG-------   99 (145)
Q Consensus        71 G~Y~C~~~~~~-------------------~--~~-------------~----------~~~~g~~~~l~c~~-------   99 (145)
                      |.|.|.+.+..                   +  .+             .          ....|+.+.|.|..       
T Consensus        91 G~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~  170 (257)
T 1f3r_B           91 GTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINNY  170 (257)
T ss_dssp             EEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCBTC
T ss_pred             EEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCCCc
Confidence            99999996540                   0  11             0          02348899999981       


Q ss_pred             --Eec-------------------------------CCcEEEEcccCCCCCeeeEEEEecCC-----CCcEEEEeCe
Q psy534          100 --VFN-------------------------------DGTELRISNIRSQDIGDYTCLATHVL-----YPDLLVVLGS  138 (145)
Q Consensus       100 --~~~-------------------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~-----g~~~~v~~~~  138 (145)
                        +..                               ....|.|.+++.+|+|.|+|.|.|..     |..|.|....
T Consensus       171 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V~~~~  247 (257)
T 1f3r_B          171 LAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELKAAE  247 (257)
T ss_dssp             EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCSSSC
T ss_pred             EEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEEeCCC
Confidence              110                               01259999999999999999999963     3555554443

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.44  E-value=9.2e-13  Score=95.23  Aligned_cols=116  Identities=14%  Similarity=0.083  Sum_probs=81.4

Q ss_pred             hccceeeEEeec-CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC------
Q psy534           10 IFQMLSVGDFAD-DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR------   82 (145)
Q Consensus        10 ~~~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~------   82 (145)
                      .+..+.+.|.+. +.|.+.+.|++++... ...  .|..+..+ ...+..+|.|.+++.+|+|.|.|.+.+...      
T Consensus       121 ~G~~v~l~C~~~~~~p~~~v~W~~~~~~i-~~~--~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  196 (312)
T 2y23_A          121 EKGQVRFWMQAEKLSGNAKVNYIFNEKEI-FEG--PKYKMHID-RNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTV  196 (312)
T ss_dssp             SSSCEEEEEEESCCCSSCEEEEEETTEEE-CSS--SSCEEEEE-TTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEEE
T ss_pred             eCCCEEEEEEEEeCCCCCEEEEEECCEEC-eeC--CcEEEEEc-cCCCEEEEEEccCCcccCEeEEEEEEeCCceEEEEE
Confidence            345677789988 8999999999998542 221  23333211 113356699999999999999998743210      


Q ss_pred             -------------------------CCC-------CCCCCcEEEEEEeE----------Ee--------------cCC-c
Q psy534           83 -------------------------SPN-------SHKNGTWFHLDVHG----------VF--------------NDG-T  105 (145)
Q Consensus        83 -------------------------~~~-------~~~~g~~~~l~c~~----------~~--------------~~~-~  105 (145)
                                               +|.       ....|+.+.|.|..          +.              ..+ .
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~  276 (312)
T 2y23_A          197 VLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGIC  276 (312)
T ss_dssp             EECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC----CEE
T ss_pred             EEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEECCEE
Confidence                                     121       23458999999981          00              011 4


Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|+|.|.|..|
T Consensus       277 ~L~I~~v~~~d~G~Y~C~a~N~~G  300 (312)
T 2y23_A          277 TLLITEFSKKDAGIYEVILKDDRG  300 (312)
T ss_dssp             EEEECSCSGGGCEEEEEEEESTTC
T ss_pred             EEEECcCCHHHCEEEEEEEEcCCC
Confidence            799999999999999999999999

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.44  E-value=1.4e-12  Score=102.17  Aligned_cols=121  Identities=19%  Similarity=0.338  Sum_probs=85.6

Q ss_pred             hhhccceeeEEeecCCCcc---EEEEecCCCCc-----------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEE
Q psy534            8 KSIFQMLSVGDFADDEDIP---VYIWYDSYPTH-----------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWY   73 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p---~~~w~k~~~~~-----------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   73 (145)
                      ...+.++.+.|-+.+.|.+   .+.|+|++...           ....+.+|+.+... ...+..+|.|.+++.+|+|.|
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~g~~~L~I~~v~~~D~G~Y   90 (585)
T 2ocw_A           12 SVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNF-PENGTFVVNIAQLSQDDSGRY   90 (585)
T ss_pred             EecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEec-CCCCEEEEEECCCCcccCEEE
Confidence            4556788889998887654   78999987421           12345678776421 223467899999999999999


Q ss_pred             EEEEEEecC------------CCC--------CCCCCcEEEEEEeE----------Eec---------------------
Q psy534           74 ECKVVFLNR------------SPN--------SHKNGTWFHLDVHG----------VFN---------------------  102 (145)
Q Consensus        74 ~C~~~~~~~------------~~~--------~~~~g~~~~l~c~~----------~~~---------------------  102 (145)
                      +|.+.+...            +|.        ....|+.+.|.|..          ++.                     
T Consensus        91 ~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~  170 (585)
T 2ocw_A           91 KCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYT  170 (585)
T ss_pred             EEEcccCCCCceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCcccc
Confidence            999854321            111        12358899999981          110                     


Q ss_pred             -------CCc-----EEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 -------DGT-----ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 -------~~~-----~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                             ++.     .|.|.+++.+|+|.|+|.|.|..|
T Consensus       171 ~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g  209 (585)
T 2ocw_A          171 GRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSN  209 (585)
T ss_pred             CcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCc
Confidence                   011     699999999999999999999987

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.44  E-value=2e-12  Score=101.35  Aligned_cols=119  Identities=18%  Similarity=0.257  Sum_probs=83.4

Q ss_pred             hhccceeeEEeecCCCccEE----EEec--CCC--Ccc------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVY----IWYD--SYP--THE------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE   74 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~----~w~k--~~~--~~~------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   74 (145)
                      ..+.++.+.|.+.|.|.|.+    .|++  ++.  ...      ...+.+|+.+..+ ...+..+|.|.+++.+|+|.|.
T Consensus       344 ~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~-~~~g~~~L~I~~v~~~D~G~Y~  422 (585)
T 2ocw_A          344 VAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEE-PGNGTFTVILNQLTSRDAGFYW  422 (585)
T ss_pred             EeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEecc-CCCcEEEEEECCCChhhCEEEE
Confidence            35677888899999998876    7998  664  222      1234567766431 1223456999999999999999


Q ss_pred             EEEEEecC-------------CCC-------CCCCCcEEEEEEeE-------------Eec-------------------
Q psy534           75 CKVVFLNR-------------SPN-------SHKNGTWFHLDVHG-------------VFN-------------------  102 (145)
Q Consensus        75 C~~~~~~~-------------~~~-------~~~~g~~~~l~c~~-------------~~~-------------------  102 (145)
                      |.+ +...             ++.       ....|+.+.|.|..             +..                   
T Consensus       423 C~a-n~~g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~  501 (585)
T 2ocw_A          423 CLT-NGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVN  501 (585)
T ss_pred             Ecc-cCCCccceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEE
Confidence            988 3210             111       12358899999951             000                   


Q ss_pred             ---CC--cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 ---DG--TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ---~~--~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                         .+  ..|.|.+++.+|+|.|+|.|.|..|
T Consensus       502 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  533 (585)
T 2ocw_A          502 CDENSRLVSLTLNLVTRADEGWYWCGVKQGHF  533 (585)
T ss_pred             ecCcccEEEEEECCCCcccCeEEEEEeEeCCC
Confidence               01  3799999999999999999999987

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.43  E-value=1.2e-12  Score=88.21  Aligned_cols=109  Identities=17%  Similarity=0.251  Sum_probs=76.5

Q ss_pred             hhhccceeeEEeecCCCcc--EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec----
Q psy534            8 KSIFQMLSVGDFADDEDIP--VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN----   81 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p--~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~----   81 (145)
                      ...+.++.+.|-+.|.|.|  .+.|++++..... .          ........|.|.  +.+|+|.|.|.+.+..    
T Consensus        10 v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~-~----------~~~~~~~~l~i~--~~~d~G~Y~C~~~n~~~~~~   76 (184)
T 3b5h_A           10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKE-D----------ALPGQKTEFKVD--SDDQWGEYSCVFLPEPMGTA   76 (184)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEESSSEEEEC-T----------TCCCSEEEEEEC--GGGCCEEEEEEEESTTSCEE
T ss_pred             EecCCCEEEEEECCCCCCCceEEEEEeCCEEeec-c----------cccCCcEEEEEe--chhhCeEEEEEEECCcCcEE
Confidence            3567788999998887777  8999998743211 1          011225567777  6999999999997421    


Q ss_pred             ---C--CCC--------CCCCCcEEEEEEeE----------Eec----------CC-------------cEEEEcccC-C
Q psy534           82 ---R--SPN--------SHKNGTWFHLDVHG----------VFN----------DG-------------TELRISNIR-S  114 (145)
Q Consensus        82 ---~--~~~--------~~~~g~~~~l~c~~----------~~~----------~~-------------~~L~i~~v~-~  114 (145)
                         +  +|.        ....|+.+.|.|..          +..          ..             ..|.|.+++ .
T Consensus        77 ~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  156 (184)
T 3b5h_A           77 NIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNME  156 (184)
T ss_dssp             EEEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTT
T ss_pred             EEEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeecccc
Confidence               1  111        13458899999971          111          00             279999999 9


Q ss_pred             CCCeeeEEEEecCCC
Q psy534          115 QDIGDYTCLATHVLY  129 (145)
Q Consensus       115 ~d~G~Y~C~a~n~~g  129 (145)
                      +|+|.|+|.|.|..|
T Consensus       157 ~d~G~Y~C~a~N~~g  171 (184)
T 3b5h_A          157 ADPGQYRCNGTSSKG  171 (184)
T ss_dssp             TSSEEEEEEEEETTE
T ss_pred             ccCceEEEEEEeCCC
Confidence            999999999999998

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.43  E-value=4.3e-13  Score=94.72  Aligned_cols=106  Identities=16%  Similarity=0.166  Sum_probs=80.2

Q ss_pred             hhhccceeeEEeecCCCcc-EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC----
Q psy534            8 KSIFQMLSVGDFADDEDIP-VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR----   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p-~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~----   82 (145)
                      ...+.++.+.|.+.+.|.+ .+.|++++.. +.               ..+.+|.|.+++.+|+|.|.|++.+...    
T Consensus        13 v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~-~~---------------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~s~~~   76 (262)
T 3rjd_A           13 VFQEETVTLHCEVLHLPGSSSTQWFLNGTA-TQ---------------TSTPSYRITSASVNDSGEYRCQRGLSGRSDPI   76 (262)
T ss_dssp             EETTCCEEEEEECSSCCCTTCEEEEETTEE-CS---------------CCSSEEEESSCCGGGCEEEEEEESSSCCCCCE
T ss_pred             eeCCCeEEEEEECCCCCCCceEEEEECCEE-ee---------------ccCCeEEEecCCcccCeEEEEEEecCCccccE
Confidence            3467788999999998887 9999998743 11               1267899999999999999999954221    


Q ss_pred             ------------C-CCCCCCCcEEEEEEeE----------E---------ecCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534           83 ------------S-PNSHKNGTWFHLDVHG----------V---------FNDGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus        83 ------------~-~~~~~~g~~~~l~c~~----------~---------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                                  + ......|+.+.|.|..          .         ......|.|.+++.+|+|.|+|.|.|..+
T Consensus        77 ~l~v~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~  155 (262)
T 3rjd_A           77 QLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHR  155 (262)
T ss_dssp             EEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEESSSE
T ss_pred             EEEEeccceEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccCCCCeEEEEECChhhCEEEEEEEeCCCC
Confidence                        0 1112468999999982          0         11134799999999999999999999886

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.43  E-value=8.3e-13  Score=95.72  Aligned_cols=119  Identities=20%  Similarity=0.227  Sum_probs=81.4

Q ss_pred             hhccceeeEEeec-CCCccEEEEecCCCC--------------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEE
Q psy534            9 SIFQMLSVGDFAD-DEDIPVYIWYDSYPT--------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWY   73 (145)
Q Consensus         9 ~~~~~~~~~~w~~-g~p~p~~~w~k~~~~--------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   73 (145)
                      ..+..+.+.|-+. +.+.+.+.|+|++..              .....+++|+.+..  ...++++|.|.+++.+|+|.|
T Consensus        12 ~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~sL~I~~v~~~D~G~Y   89 (308)
T 4fom_A           12 VWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKN--YSLNDATITLHNIGFSDSGKY   89 (308)
T ss_dssp             ETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESC--CSSSBCCEEECSCCGGGCEEE
T ss_pred             EcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeec--cCCCceEEEEccCCHHHCEEE
Confidence            3466777888776 446667899876432              12334566776532  234578999999999999999


Q ss_pred             EEEEEEec-------------C--------CCCC--CCCCcEEEEEEeEE----------e-------------cC----
Q psy534           74 ECKVVFLN-------------R--------SPNS--HKNGTWFHLDVHGV----------F-------------ND----  103 (145)
Q Consensus        74 ~C~~~~~~-------------~--------~~~~--~~~g~~~~l~c~~~----------~-------------~~----  103 (145)
                      +|++.+..             .        .+..  ...+..+.|.|...          .             ..    
T Consensus        90 ~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~~~~  169 (308)
T 4fom_A           90 ICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNETAT  169 (308)
T ss_dssp             EEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTSCEE
T ss_pred             EEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeeeccc
Confidence            99996531             0        1111  23478899999610          0             01    


Q ss_pred             -CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 -GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 -~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                       ...|.|..+..+|+|.|+|.|.|..|
T Consensus       170 ~~s~l~i~~~~~~d~g~Y~C~a~n~~~  196 (308)
T 4fom_A          170 IISQYKLFPTRFARGRRITCVVKHPAL  196 (308)
T ss_dssp             EEEEEEECCCGGGTTCEEEEEEECTTC
T ss_pred             ccccceEEeeeecCCccEEEEEEccCC
Confidence             12588999999999999999999876

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.43  E-value=1.7e-12  Score=102.97  Aligned_cols=112  Identities=18%  Similarity=0.306  Sum_probs=82.5

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC------
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR------   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~------   82 (145)
                      ..+.++.+.|-+.+ |.+.+.|++++....   ...|+.+..     .+.+|.|.+++.+|+|.|.|.+.+...      
T Consensus       480 ~~g~~v~l~C~~~~-~~~~i~W~~~g~~l~---~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~  550 (642)
T 1e07_A          480 EDKDAVAFTCEPEA-QNTTYLWWVNGQSLP---VSPRLQLSN-----GNRTLTLFNVTRNDARAYVCGIQNSVSANRSDP  550 (642)
T ss_pred             cCCCeEEEEEECCC-CCcEEEEEECCEeCC---CCCcEEEcC-----CCcEEEEeecChhcCceEEEEeEcCCCCccCCC
Confidence            35667777888774 788999999985421   234555432     367999999999999999999975421      


Q ss_pred             -------CCC---------CCCCCcEEEEEEeE---------E------ecCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534           83 -------SPN---------SHKNGTWFHLDVHG---------V------FNDGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus        83 -------~~~---------~~~~g~~~~l~c~~---------~------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                             .|.         ....|+.+.|.|..         +      ...+..|.|.+++.+|+|.|+|.|.|.+|
T Consensus       551 ~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~~~~L~i~~~~~~d~G~Y~C~a~N~~G  628 (642)
T 1e07_A          551 VTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAKITPNNNGTYACFVSNLAT  628 (642)
T ss_pred             EEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECccCceEEECcccccCCeEEEEEEEeccc
Confidence                   111         12348899999982         1      12234799999999999999999999998

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.43  E-value=1.5e-12  Score=89.38  Aligned_cols=112  Identities=11%  Similarity=0.182  Sum_probs=75.4

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec------
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN------   81 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~------   81 (145)
                      ...+.++.+.|.+.+ +.+.+.|||++..........+...     ...++.|.|.+++.+|+|.|+|.+.+..      
T Consensus        19 v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~-----~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~   92 (201)
T 1nkr_A           19 VKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHD-----GVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVS   92 (201)
T ss_dssp             EETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEET-----TEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCC
T ss_pred             cCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCC-----CCceEEEEeccCCcccCeEEEEeEecCCCCcccc
Confidence            345677888898874 6789999999754211111111110     1236889999999999999999996421      


Q ss_pred             C--------------CC------C-CCCCCcEEEEEEeE--------Ee---------------cC---CcEEEEcccCC
Q psy534           82 R--------------SP------N-SHKNGTWFHLDVHG--------VF---------------ND---GTELRISNIRS  114 (145)
Q Consensus        82 ~--------------~~------~-~~~~g~~~~l~c~~--------~~---------------~~---~~~L~i~~v~~  114 (145)
                      .              .|      . ....|+.++|.|..        ..               ..   ...|.|.+++ 
T Consensus        93 ~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~-  171 (201)
T 1nkr_A           93 APSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT-  171 (201)
T ss_dssp             CCCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEESSCCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECC-
T ss_pred             CCCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEeCCCCCceEEEEECCcccCcccccccccCCceEEEEEeCCcC-
Confidence            0              01      1 12458999999982        00               01   2368999998 


Q ss_pred             CCCeeeEEEEecC
Q psy534          115 QDIGDYTCLATHV  127 (145)
Q Consensus       115 ~d~G~Y~C~a~n~  127 (145)
                       |+|.|+|.|.+.
T Consensus       172 -d~G~Y~C~a~~~  183 (201)
T 1nkr_A          172 -HGGTYRCFGSFH  183 (201)
T ss_dssp             -SCEEEEEEEEET
T ss_pred             -CCeeEEEEEEcC
Confidence             999999999975

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.43  E-value=1.2e-12  Score=101.56  Aligned_cols=120  Identities=17%  Similarity=0.101  Sum_probs=83.8

Q ss_pred             hhccceeeEEeecCCCccE-EEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-----
Q psy534            9 SIFQMLSVGDFADDEDIPV-YIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-----   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~-~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-----   82 (145)
                      ..+.++.+.|-+.|.|.|. +.|++++... ......+..+..+......++|.|.+++.+|+|.|.|.+.+...     
T Consensus       224 ~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~  302 (524)
T 2ec8_A          224 REGEEFTVTCTIKDVSSSVYSTWKRENSQT-KLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVT  302 (524)
T ss_dssp             ETTSCEEEEEEEEESSTTCEEEEEETTCSC-CCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEE
T ss_pred             EcCCcEEEEEEEecCCCcEEEEEEeCCCCC-ccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEE
Confidence            4566788889999988887 9999998541 11222232222111123378899999999999999999965320     


Q ss_pred             -------CC-----------CCCCCCcEEEEEEeEE----------e------c----------------CCcEEEEccc
Q psy534           83 -------SP-----------NSHKNGTWFHLDVHGV----------F------N----------------DGTELRISNI  112 (145)
Q Consensus        83 -------~~-----------~~~~~g~~~~l~c~~~----------~------~----------------~~~~L~i~~v  112 (145)
                             +|           .....|+.+.|.|...          .      .                ....|.|.++
T Consensus       303 ~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v  382 (524)
T 2ec8_A          303 TTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRL  382 (524)
T ss_dssp             EEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSC
T ss_pred             EEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeec
Confidence                   11           1134589999999810          0      0                0137999999


Q ss_pred             CCCCCeeeEEEEecCCC
Q psy534          113 RSQDIGDYTCLATHVLY  129 (145)
Q Consensus       113 ~~~d~G~Y~C~a~n~~g  129 (145)
                      +.+|+|.|+|.|.|..|
T Consensus       383 ~~~d~G~Y~C~a~N~~g  399 (524)
T 2ec8_A          383 KGTEGGTYTFLVSNSDV  399 (524)
T ss_dssp             CGGGCEEEEEEEECSSC
T ss_pred             CcccCeEEEEEEEecCc
Confidence            99999999999999998

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.42  E-value=3.7e-13  Score=95.29  Aligned_cols=119  Identities=16%  Similarity=0.113  Sum_probs=81.7

Q ss_pred             hhhccceeeEEeecCCC-----ccEEEEecCCC-C-c---------ccccccceEEEecCCCCCCeeeEEEcccCCCCCE
Q psy534            8 KSIFQMLSVGDFADDED-----IPVYIWYDSYP-T-H---------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQG   71 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p-----~p~~~w~k~~~-~-~---------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G   71 (145)
                      ...+.++.+.|-+.|.|     .+.+.||+++. . .         ....+.+|+.+..   .....+|.|.+++.+|+|
T Consensus        50 v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G  126 (254)
T 2c1o_A           50 VTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSG---SGTDFTLKISRVEAEDLG  126 (254)
T ss_dssp             ECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCS
T ss_pred             ecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEec---CCCEEEEEECcCCcccCE
Confidence            45677888999999887     48999997531 1 1         1223446666532   134679999999999999


Q ss_pred             EEEEEEEEec-----------C-----CCCC--------CCCCcEEEEEEeE-----------Ee------cC-------
Q psy534           72 WYECKVVFLN-----------R-----SPNS--------HKNGTWFHLDVHG-----------VF------ND-------  103 (145)
Q Consensus        72 ~Y~C~~~~~~-----------~-----~~~~--------~~~g~~~~l~c~~-----------~~------~~-------  103 (145)
                      .|+|.+.+..           +     +|..        ...|..+.|.|..           +.      ..       
T Consensus       127 ~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~  206 (254)
T 2c1o_A          127 IYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWT  206 (254)
T ss_dssp             EEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEEC
T ss_pred             EEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccc
Confidence            9999995431           0     1110        1126799999981           00      01       


Q ss_pred             -----------CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 -----------GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 -----------~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                                 ...|.|.++..+|+|.|+|.|.|...
T Consensus       207 ~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  243 (254)
T 2c1o_A          207 DQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  243 (254)
T ss_dssp             CCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             cccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCC
Confidence                       12588999999999999999999875

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.42  E-value=6.6e-12  Score=86.79  Aligned_cols=117  Identities=12%  Similarity=0.015  Sum_probs=81.2

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC------
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR------   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~------   82 (145)
                      ..+.++.+.|.+.|.|.|.+.|+|++.. +......|+.+...   ....+|.|.+++.+|+|.|.|.+.+...      
T Consensus        31 ~~G~~v~l~C~~~g~p~p~i~W~~~g~~-l~~~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  106 (215)
T 3mtr_A           31 WEGNQVNITCEVFAYPSATISWFRDGQL-LPSSNYSNIKIYNT---PSASYLEVTPDSENDFGNYNCTAVNRIGQESLEF  106 (215)
T ss_dssp             CTTCCEEEEEEEEEESCCEEEEEETTEE-SSCSSSCSEEEEEE---TTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEE
T ss_pred             ECCCCEEEEEEEeecCCCEEEEEECCeE-CCCCCCccEEEecC---CCeeEEEEecCChhhCeEEEEEEEECCCceEEEE
Confidence            4567788899999999999999998753 32222234544321   2378899999999999999999965321      


Q ss_pred             ------CCCC------CCCCcEEEEEEeE---------------Ee-----------------cCCcEEEEcccCCCCCe
Q psy534           83 ------SPNS------HKNGTWFHLDVHG---------------VF-----------------NDGTELRISNIRSQDIG  118 (145)
Q Consensus        83 ------~~~~------~~~g~~~~l~c~~---------------~~-----------------~~~~~L~i~~v~~~d~G  118 (145)
                            .|..      ...+..+.|.|..               ..                 .....|.|.++...+.|
T Consensus       107 ~l~v~~~P~~p~~~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y  186 (215)
T 3mtr_A          107 ILVQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTY  186 (215)
T ss_dssp             EEEECCCCCCCEEEEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEE
T ss_pred             EEEECCCCCCCcceEEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccccccEEECCCCCCCEE
Confidence                  1211      1124455555530               00                 00147999999999999


Q ss_pred             eeEEEEecCCC
Q psy534          119 DYTCLATHVLY  129 (145)
Q Consensus       119 ~Y~C~a~n~~g  129 (145)
                      .|+|.|.|.+|
T Consensus       187 ~~~~~A~N~~G  197 (215)
T 3mtr_A          187 AVRLAALNGKG  197 (215)
T ss_dssp             EEEEEEEESSC
T ss_pred             EEEEEEEeCCc
Confidence            99999999998

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.42  E-value=9.8e-13  Score=93.42  Aligned_cols=130  Identities=18%  Similarity=0.226  Sum_probs=85.4

Q ss_pred             hhhccceeeEEeecCC--CccEEEEecCCC-C--------------cccccccceEEEecCCCCCCeeeEEEcccCCCCC
Q psy534            8 KSIFQMLSVGDFADDE--DIPVYIWYDSYP-T--------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQ   70 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~--p~p~~~w~k~~~-~--------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   70 (145)
                      ...+.++.+-|-+.|.  +.+.+.||+... .              .....+.+|+.+..+ ......+|.|.+++.+|+
T Consensus        20 v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~v~~~Ds   98 (257)
T 3gkz_A           20 VKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRD-TSKNQVYLQLKSVSSEDT   98 (257)
T ss_dssp             ECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEE-GGGTEEEEEECSCCGGGC
T ss_pred             EcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEe-cCCceEEEEECCCChhhC
Confidence            4567788888988863  578899988431 1              011234567766432 113366899999999999


Q ss_pred             EEEEEEEEEe--------c------C--C------------CCC----------CCCCcEEEEEEeE----------Eec
Q psy534           71 GWYECKVVFL--------N------R--S------------PNS----------HKNGTWFHLDVHG----------VFN  102 (145)
Q Consensus        71 G~Y~C~~~~~--------~------~--~------------~~~----------~~~g~~~~l~c~~----------~~~  102 (145)
                      |.|.|.+.+.        .      +  .            +.+          ...|+.++|.|..          ++.
T Consensus        99 G~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k  178 (257)
T 3gkz_A           99 ATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYWYQ  178 (257)
T ss_dssp             EEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGGGEEEEE
T ss_pred             EEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccceEEEEEE
Confidence            9999999763        0      0  1            000          2348999999981          100


Q ss_pred             -------------------------------CCcEEEEcccCCCCCeeeEEEEecCCC------CcEEEEeCe
Q psy534          103 -------------------------------DGTELRISNIRSQDIGDYTCLATHVLY------PDLLVVLGS  138 (145)
Q Consensus       103 -------------------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g------~~~~v~~~~  138 (145)
                                                     ...+|.|.+++.+|+|.|+|.|.+...      ..|.|....
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~~~  251 (257)
T 3gkz_A          179 QKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKRAP  251 (257)
T ss_dssp             ECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCC-
T ss_pred             ECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEeCC
Confidence                                           011499999999999999999998432      555555433

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.42  E-value=7.9e-13  Score=89.95  Aligned_cols=115  Identities=9%  Similarity=0.096  Sum_probs=72.0

Q ss_pred             hhccceeeEEeecC-CCccEEEEecCC-CC-----------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            9 SIFQMLSVGDFADD-EDIPVYIWYDSY-PT-----------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         9 ~~~~~~~~~~w~~g-~p~p~~~w~k~~-~~-----------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      ..+..+.+-|...+ .+.+.+.|++++ ..           ..+..|++|+.+.     ..+++|.|.+++.+|+|.|.|
T Consensus        12 ~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~-----~~~~sL~I~~v~~~D~G~Y~C   86 (180)
T 2dru_A           12 ITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD-----KTNGALRIYNVSKEDRGDYYM   86 (180)
T ss_dssp             ETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEEC-----TTTCCEEECSCCGGGCEEEEE
T ss_pred             EeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEe-----CCCccEEEcCCCHHHCeEEEE
Confidence            34455555565533 345677777742 11           1135577888872     358999999999999999999


Q ss_pred             EEEEec---------C--C-CCC--CCCCcEEEEEEeE---------EecC--------CcEEEEcccCCCCCeeeEEEE
Q psy534           76 KVVFLN---------R--S-PNS--HKNGTWFHLDVHG---------VFND--------GTELRISNIRSQDIGDYTCLA  124 (145)
Q Consensus        76 ~~~~~~---------~--~-~~~--~~~g~~~~l~c~~---------~~~~--------~~~L~i~~v~~~d~G~Y~C~a  124 (145)
                      ++....         +  + +.+  ...+..+.|.|..         +..+        +.+|.+..  .+|+|.|+|.|
T Consensus        87 ~v~~~~~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~~~gp~p~i~W~~~~~~l~~~~~~~l~~~~--~~d~g~Y~C~a  164 (180)
T 2dru_A           87 RMLHETEDQWKITMEVYEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQW--TNLRAPFKCKA  164 (180)
T ss_dssp             EEESSSEEEEEEEEEEECCCCCCEEEEEGGGTEEEEECSSCTTCEEEEEETTEEEEEESSSEEEEEC--SCCSSCEEEEE
T ss_pred             EEEcCCeEEEEEEEEEECCCCCCEEEecCCCEEEEEEeCCCCCCEEEEEECCeECcCCCCCEEEEEE--hhcCccEEEEE
Confidence            974321         1  1 111  1234568889982         1112        22444422  68999999999


Q ss_pred             ecCCCC
Q psy534          125 THVLYP  130 (145)
Q Consensus       125 ~n~~g~  130 (145)
                      +|.++.
T Consensus       165 ~N~~~~  170 (180)
T 2dru_A          165 VNRVSQ  170 (180)
T ss_dssp             EETTEE
T ss_pred             ecCcCc
Confidence            999983

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.42  E-value=6.3e-13  Score=94.46  Aligned_cols=73  Identities=19%  Similarity=0.217  Sum_probs=50.8

Q ss_pred             HhhhccceeeEEeecCC--CccEEEEecCCC--C--------------cccccccceEEEecCCCCCCeeeEEEcccCCC
Q psy534            7 VKSIFQMLSVGDFADDE--DIPVYIWYDSYP--T--------------HEAEEYKGRISRVDKESPFGMASLNLTKIRES   68 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~--p~p~~~w~k~~~--~--------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~   68 (145)
                      +...+.++.+-|-+.+.  +.+.+.||+...  .              .....+.+|+.+..+ ......+|.|.+++.+
T Consensus        17 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~~   95 (256)
T 3juy_B           17 VKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTAD-TSANTAYMELRSLRSA   95 (256)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEE-TTTTEEEEEECSCCGG
T ss_pred             eecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEe-cCCCEEEEEECCCCcc
Confidence            34567788888888763  677888986431  0              112335567776522 2244678999999999


Q ss_pred             CCEEEEEEEEEe
Q psy534           69 DQGWYECKVVFL   80 (145)
Q Consensus        69 D~G~Y~C~~~~~   80 (145)
                      |+|.|.|.+.+.
T Consensus        96 DsG~Y~C~~~~~  107 (256)
T 3juy_B           96 DTAVYYCARVGE  107 (256)
T ss_dssp             GCEEEEEEECCC
T ss_pred             cCEEEEEeEEec
Confidence            999999999764

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.42  E-value=3e-13  Score=99.27  Aligned_cols=114  Identities=16%  Similarity=0.078  Sum_probs=83.7

Q ss_pred             hhccceeeEEeec-------CCCccEEEEecCCCCc-ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFAD-------DEDIPVYIWYDSYPTH-EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~-------g~p~p~~~w~k~~~~~-~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.++.+.|-+.       +.|.+.+.|++++... +......|+..       .+++|.|.+++.+|+|.|.|.+.+.
T Consensus        31 ~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~~~n~  103 (339)
T 3o4o_C           31 LEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA-------QDGALWLLPALQEDSGTYVCTTRNA  103 (339)
T ss_dssp             ETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEE-------ETTEEEESSBCTTCCEEEECCEEET
T ss_pred             ECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEe-------eCCeEEECCCCcccCEEEEEEEECC
Confidence            4566778888887       8899999999987542 22333455543       2678999999999999999999653


Q ss_pred             c----------C--CC----------CCCCCCcEEEEEEe-----EE---------------e----------cCCcEEE
Q psy534           81 N----------R--SP----------NSHKNGTWFHLDVH-----GV---------------F----------NDGTELR  108 (145)
Q Consensus        81 ~----------~--~~----------~~~~~g~~~~l~c~-----~~---------------~----------~~~~~L~  108 (145)
                      .          +  .+          .....|..+.|.|.     ..               .          .....|.
T Consensus       104 ~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~  183 (339)
T 3o4o_C          104 SYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLL  183 (339)
T ss_dssp             TEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEECTTSSEEE
T ss_pred             cceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEcCCcceEE
Confidence            2          0  11          11245899999997     10               0          1113799


Q ss_pred             EcccCCCCCeeeEEEEecCCC
Q psy534          109 ISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       109 i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      |.+++.+|+|.|+|.|.|..|
T Consensus       184 i~~v~~~d~G~Y~C~a~n~~g  204 (339)
T 3o4o_C          184 VHDVALEDAGYYRCVLTFAHE  204 (339)
T ss_dssp             ESSCCGGGCEEEEEEEECCBT
T ss_pred             EcccCHhhCeEEEEEEEECCC
Confidence            999999999999999999876

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.42  E-value=4e-12  Score=91.13  Aligned_cols=116  Identities=18%  Similarity=0.133  Sum_probs=81.4

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-----
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-----   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-----   82 (145)
                      ...+.++.+.|-+.|.|. .+.|++.++..+.  ...|+.+..+   ....+|.|.+++.+|+|.|+|.+.+...     
T Consensus        16 v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~--~~~~~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~   89 (291)
T 2wim_A           16 LSVGESKFFTCTAIGEPE-SIDWYNPQGEKII--STQRVVVQKE---GVRSRLTIYNANIEDAGIYRCQATDAKGQTQEA   89 (291)
T ss_dssp             EETTCCEEEEEEEESCCS-EEECBCTTCCBCC--CBTTEEEEEE---TTEEEEEECSCCGGGCEEEEEEEECSSSCEEEE
T ss_pred             ecCCCcEEEEEEEeCCCC-ceEEECCCCcCcc--CCCcEEEecC---CCEEEEEEccCCcccCEEEEEEEecccCceEEE
Confidence            345678888999998875 8999995433222  2234444321   2356899999999999999999965320     


Q ss_pred             --------CC------C--CCCCCcEEEEEEeE---------E----------------ecCCcEEEEcccCCCCCeeeE
Q psy534           83 --------SP------N--SHKNGTWFHLDVHG---------V----------------FNDGTELRISNIRSQDIGDYT  121 (145)
Q Consensus        83 --------~~------~--~~~~g~~~~l~c~~---------~----------------~~~~~~L~i~~v~~~d~G~Y~  121 (145)
                              ++      .  ....|+.+.|.|..         +                ...+..|.|.+++.+|+|.|+
T Consensus        90 ~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  169 (291)
T 2wim_A           90 TVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYR  169 (291)
T ss_dssp             EEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEE
T ss_pred             EEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEE
Confidence                    11      0  12358889999981         0                112347999999999999999


Q ss_pred             EEEecCCC
Q psy534          122 CLATHVLY  129 (145)
Q Consensus       122 C~a~n~~g  129 (145)
                      |.|.|..+
T Consensus       170 C~~~n~~~  177 (291)
T 2wim_A          170 CEGRVEAR  177 (291)
T ss_dssp             EEEEETTT
T ss_pred             EEEEECCC
Confidence            99999885

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.42  E-value=8.1e-13  Score=94.26  Aligned_cols=130  Identities=16%  Similarity=0.198  Sum_probs=87.2

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC-Cc---------------ccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP-TH---------------EAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~-~~---------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      ...+.++.+.|.+.|.|  .+.+.||++.. ..               ....+.+|+.+..+ ...+..+|.|.+++.+|
T Consensus        12 v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~~D   90 (256)
T 1nqb_A           12 VKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVD-KPSSTAYMQLSSLTSED   90 (256)
T ss_dssp             ECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEE-TTTTEEEEEECSCCGGG
T ss_pred             ecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEe-cCCCEEEEEECcCChhh
Confidence            45677888999998875  67899998531 10               01234577776432 22346899999999999


Q ss_pred             CEEEEEEEEEec---------------C--CC------C--CCCCCcEEEEEEeE-----E---------ec--CC----
Q psy534           70 QGWYECKVVFLN---------------R--SP------N--SHKNGTWFHLDVHG-----V---------FN--DG----  104 (145)
Q Consensus        70 ~G~Y~C~~~~~~---------------~--~~------~--~~~~g~~~~l~c~~-----~---------~~--~~----  104 (145)
                      +|.|+|.+.+..               +  .+      .  ....|+.+.|.|..     .         +.  .+    
T Consensus        91 sG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~  170 (256)
T 1nqb_A           91 SAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPK  170 (256)
T ss_dssp             CEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEE
T ss_pred             CEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcE
Confidence            999999997541               0  01      1  12458899999972     0         00  11    


Q ss_pred             -------------------------cEEEEcccCCCCCeeeEEEEecCC------CCcEEEEeCe
Q psy534          105 -------------------------TELRISNIRSQDIGDYTCLATHVL------YPDLLVVLGS  138 (145)
Q Consensus       105 -------------------------~~L~i~~v~~~d~G~Y~C~a~n~~------g~~~~v~~~~  138 (145)
                                               ..|.|.+++.+|+|.|+|.|.|..      |..|.|....
T Consensus       171 ~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~~  235 (256)
T 1nqb_A          171 LLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRAA  235 (256)
T ss_dssp             EEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC--
T ss_pred             EEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEECCC
Confidence                                     158899999999999999999843      2566665443

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.41  E-value=1.4e-12  Score=91.43  Aligned_cols=116  Identities=16%  Similarity=0.204  Sum_probs=80.7

Q ss_pred             hhhccceeeEEeecCCC----ccEEEEecCCC---Cc--------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEE
Q psy534            8 KSIFQMLSVGDFADDED----IPVYIWYDSYP---TH--------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGW   72 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p----~p~~~w~k~~~---~~--------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~   72 (145)
                      ...+..+.+.|-+.+.|    .+.+.||++..   ..        ....+.+|+.+..   .....+|.|.+++.+|+|.
T Consensus        13 v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~   89 (240)
T 1moe_A           13 VSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG---SRTDFTLIIDPVEADDVAT   89 (240)
T ss_dssp             ECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCEE
T ss_pred             ecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEe---cCCeEEEEEcCCChhhCEE
Confidence            45677889999999888    88899998631   10        0112345666532   1346689999999999999


Q ss_pred             EEEEEEEec-----------C--CC-----C---------CCCCCcEEEEEEeEE-----------ecC-----------
Q psy534           73 YECKVVFLN-----------R--SP-----N---------SHKNGTWFHLDVHGV-----------FND-----------  103 (145)
Q Consensus        73 Y~C~~~~~~-----------~--~~-----~---------~~~~g~~~~l~c~~~-----------~~~-----------  103 (145)
                      |+|.+.+..           +  .+     .         ....|+.+.|.|...           +..           
T Consensus        90 Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~  169 (240)
T 1moe_A           90 YYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGR  169 (240)
T ss_dssp             EEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEE
T ss_pred             EEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEE
Confidence            999995431           0  10     0         023488999999821           000           


Q ss_pred             ---------------------------CcEEEEcccCCCCCeeeEEEEec
Q psy534          104 ---------------------------GTELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       104 ---------------------------~~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                                                 ...|.|.+++.+|+|.|+|.|.+
T Consensus       170 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          170 IDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             EETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             EcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence                                       02599999999999999999994

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.41  E-value=8.3e-13  Score=91.67  Aligned_cols=120  Identities=18%  Similarity=0.174  Sum_probs=81.5

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC-C-----------------cccccccceEEEecCCCCCCeeeEEEcccCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP-T-----------------HEAEEYKGRISRVDKESPFGMASLNLTKIRE   67 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~-~-----------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~   67 (145)
                      +..+..+.+-|-+.+.+  .+.+.||++.. .                 ...+.+.+|+.+..+. ..++.+|.|.+++.
T Consensus        12 ~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~~L~I~~v~~   90 (220)
T 1pz5_B           12 VQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDD-SKSSVYLQMNNLRA   90 (220)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEG-GGTEEEEEECSCCG
T ss_pred             EcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeC-CCCeEEEEEccCCH
Confidence            45677888899988766  78899988641 1                 0112345787764321 23467999999999


Q ss_pred             CCCEEEEEEEEEec-------C------------CC--------CCCCCCcEEEEEEeEE-----------ecCC-----
Q psy534           68 SDQGWYECKVVFLN-------R------------SP--------NSHKNGTWFHLDVHGV-----------FNDG-----  104 (145)
Q Consensus        68 ~D~G~Y~C~~~~~~-------~------------~~--------~~~~~g~~~~l~c~~~-----------~~~~-----  104 (145)
                      +|+|.|+|.+.+..       .            +|        .....|..+.|.|...           ..++     
T Consensus        91 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~  170 (220)
T 1pz5_B           91 EDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGV  170 (220)
T ss_dssp             GGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTCCTTE
T ss_pred             HHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCCcccce
Confidence            99999999996531       0            01        0123588999999820           0011     


Q ss_pred             ---------------cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 ---------------TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ---------------~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                                     ..|.|..+..++ |.|+|.|.|..|
T Consensus       171 ~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~  209 (220)
T 1pz5_B          171 RTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPAS  209 (220)
T ss_dssp             EECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGG
T ss_pred             EEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCc
Confidence                           236777777766 999999999988

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.41  E-value=1.6e-12  Score=94.86  Aligned_cols=110  Identities=19%  Similarity=0.192  Sum_probs=77.5

Q ss_pred             cceeeEEe-ecCCCccEEEEecCCCCccc-cc---ccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC----
Q psy534           12 QMLSVGDF-ADDEDIPVYIWYDSYPTHEA-EE---YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR----   82 (145)
Q Consensus        12 ~~~~~~~w-~~g~p~p~~~w~k~~~~~~~-~~---~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~----   82 (145)
                      ..+.+.|- ..|.|.|.+.|+++...... ..   -.+...+        ...|.|.+++.+|+|.|+|.+.+...    
T Consensus       151 ~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~--------~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  222 (331)
T 3u83_A          151 KVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTV--------ISRYRLVPSREAHQQSLACIVNYHMDRFKE  222 (331)
T ss_dssp             CEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECTTSCEEE--------EEEEEECCCGGGTTCEEEEEEEETTEEEEE
T ss_pred             ceEEEEEEecCCcCCceEEEEcCCCCccccceeECCCCcEEE--------EEEEEEEeccccCCCEEEEEEecCCCccee
Confidence            45788897 77999999999986422110 00   0111111        46689999999999999999965420    


Q ss_pred             ---------------CC--CCCCCCcEEEEEEeE----------Ee-----------cCCcEEEEc-ccCCCCCeeeEEE
Q psy534           83 ---------------SP--NSHKNGTWFHLDVHG----------VF-----------NDGTELRIS-NIRSQDIGDYTCL  123 (145)
Q Consensus        83 ---------------~~--~~~~~g~~~~l~c~~----------~~-----------~~~~~L~i~-~v~~~d~G~Y~C~  123 (145)
                                     ++  .....|+.+.|.|..          +.           ..+..|.|. +++.+|+|.|+|.
T Consensus       223 ~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~L~i~~~v~~~d~G~Y~C~  302 (331)
T 3u83_A          223 SLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICE  302 (331)
T ss_dssp             EEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECSCCCGGGCEEEEEE
T ss_pred             eEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccceecCcEEEEeCCCccccCeEEEEE
Confidence                           11  113568999999982          00           123479999 9999999999999


Q ss_pred             EecCCC
Q psy534          124 ATHVLY  129 (145)
Q Consensus       124 a~n~~g  129 (145)
                      |.|..|
T Consensus       303 a~N~~G  308 (331)
T 3u83_A          303 ATNPIG  308 (331)
T ss_dssp             EEETTE
T ss_pred             EEeccc
Confidence            999998

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.41  E-value=3.2e-13  Score=98.55  Aligned_cols=110  Identities=15%  Similarity=0.228  Sum_probs=78.2

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec-------
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN-------   81 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-------   81 (145)
                      ..+.++.+.|-+.|. .+.+.|+|++.... .....         .....+|.|.+++.+|+|.|+|.+.+..       
T Consensus        36 ~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~-~~~~~---------~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~  104 (316)
T 3vh8_G           36 PRGGHVTLRCHYRHR-FNNFMLYKEDRIHI-PIFHG---------RIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSA  104 (316)
T ss_dssp             ETTSCEEEEEEBTTB-CCSEEEEESSCSSS-CHHHH---------CCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCC
T ss_pred             CCCCCEEEEEEccCC-CceEEEEeCCCccc-eeecC---------CcceEEEEECCCCcccCeEEEEEEEcCCCCcceec
Confidence            456778888988877 67899999985421 11110         1237889999999999999999985311       


Q ss_pred             --------C---C--C------C-CCCCCcEEEEEEeE--------Ee------------------cCCcEEEEcccCCC
Q psy534           82 --------R---S--P------N-SHKNGTWFHLDVHG--------VF------------------NDGTELRISNIRSQ  115 (145)
Q Consensus        82 --------~---~--~------~-~~~~g~~~~l~c~~--------~~------------------~~~~~L~i~~v~~~  115 (145)
                              +   .  +      . ....|+.+.|.|..        ..                  .....|.|.+++.+
T Consensus       105 ~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  184 (316)
T 3vh8_G          105 PSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLA  184 (316)
T ss_dssp             CCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEESSCCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGG
T ss_pred             CCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcCCCCCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChh
Confidence                    0   0  0      0 12358999999982        00                  01236999999999


Q ss_pred             CCeeeEEEEecCCC
Q psy534          116 DIGDYTCLATHVLY  129 (145)
Q Consensus       116 d~G~Y~C~a~n~~g  129 (145)
                      |+|.|+|.|.|..|
T Consensus       185 D~G~Y~C~a~n~~g  198 (316)
T 3vh8_G          185 LAGTYRCYGSVTHT  198 (316)
T ss_dssp             GCEEEEEEEECTTC
T ss_pred             hCceEEEEEecCCC
Confidence            99999999999865

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.41  E-value=7e-13  Score=90.65  Aligned_cols=120  Identities=15%  Similarity=0.133  Sum_probs=79.5

Q ss_pred             hhhccceeeEEeec----CCCccEEEEecCCCCc---------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEE
Q psy534            8 KSIFQMLSVGDFAD----DEDIPVYIWYDSYPTH---------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE   74 (145)
Q Consensus         8 ~~~~~~~~~~~w~~----g~p~p~~~w~k~~~~~---------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   74 (145)
                      +..+.++.+.|.+.    +.|.+.+.|++++...         ....+.+|..+.    ..++.+|.|.+++.+|+|.|.
T Consensus         6 v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~----~~~~~~L~I~~v~~~D~G~Y~   81 (201)
T 1dr9_A            6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD----ITNNLSIVILALRPSDEGTYE   81 (201)
T ss_dssp             EETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE----STTTTEEEECSCCGGGCEEEE
T ss_pred             EEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc----cCCCcEEEEecccchhCeEEE
Confidence            34566777888775    3367788898886432         223466777651    134789999999999999999


Q ss_pred             EEEEEec---------------C--C-CCC------CCCCcEEEEEEeEE----------e----------------cCC
Q psy534           75 CKVVFLN---------------R--S-PNS------HKNGTWFHLDVHGV----------F----------------NDG  104 (145)
Q Consensus        75 C~~~~~~---------------~--~-~~~------~~~g~~~~l~c~~~----------~----------------~~~  104 (145)
                      |.+.+..               +  . +.+      ...|..+.|.|...          .                ..+
T Consensus        82 C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~  161 (201)
T 1dr9_A           82 CVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPET  161 (201)
T ss_dssp             EEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTT
T ss_pred             EEEEcCCCCccccccccEEEEEEcCCCCCCceEeccCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEecCCC
Confidence            9997631               0  1 111      13477899999820          0                111


Q ss_pred             cEE---EEcccCCCCCeeeEEEEecCCCCc
Q psy534          105 TEL---RISNIRSQDIGDYTCLATHVLYPD  131 (145)
Q Consensus       105 ~~L---~i~~v~~~d~G~Y~C~a~n~~g~~  131 (145)
                      ..+   .+..+..+|+|.|+|.|.|+.|..
T Consensus       162 ~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~  191 (201)
T 1dr9_A          162 ELYAVSSKLDFNMTTNHSFMCLIKYGHLRV  191 (201)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEEEETTCCE
T ss_pred             cEEEEEEEEEEEecCCCEEEEEEecCccee
Confidence            122   224556789999999999999843

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.41  E-value=4.3e-13  Score=91.66  Aligned_cols=113  Identities=12%  Similarity=0.145  Sum_probs=70.0

Q ss_pred             hccceeeEEeec--CCCccEEEEec--CCCCccc--c-----cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           10 IFQMLSVGDFAD--DEDIPVYIWYD--SYPTHEA--E-----EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        10 ~~~~~~~~~w~~--g~p~p~~~w~k--~~~~~~~--~-----~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      .+.++.+-|-..  +.+.+.+.|++  ++.....  .     ...+|..++      .+++|.|.+++++|+|.|.|++.
T Consensus        13 ~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~------~ngsL~I~~v~~~DsG~Y~c~~~   86 (182)
T 1hnf_A           13 LGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF------KNGTLKIKHLKTDDQDIYKVSIY   86 (182)
T ss_dssp             TTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEEC------TTSCEEECSCCGGGCEEEEEEEE
T ss_pred             cCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEEC------CCCCEEECCCChhhCEEEEEEEE
Confidence            344555544221  35678899988  6543210  0     235677763      37899999999999999999996


Q ss_pred             EecC--------------C-CCC--CCCCcEEEEEEeE---------EecCCc-------EEEEcccCCCCCeeeEEEEe
Q psy534           79 FLNR--------------S-PNS--HKNGTWFHLDVHG---------VFNDGT-------ELRISNIRSQDIGDYTCLAT  125 (145)
Q Consensus        79 ~~~~--------------~-~~~--~~~g~~~~l~c~~---------~~~~~~-------~L~i~~v~~~d~G~Y~C~a~  125 (145)
                      +...              + +.+  ...+..+.|.|..         +..++.       .|.+ ....+|+|.|+|.|.
T Consensus        87 n~~g~~~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~~~~p~~~~~W~~~g~~l~~~~~~i~~-~~~~~d~G~Y~C~a~  165 (182)
T 1hnf_A           87 DTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITH-KWTTSLSAKFKCTAG  165 (182)
T ss_dssp             ETTSCEEEEEEEEEEEECCCCCCEEEEETTTTEEEEECSSCSSCEEEEEESSCEEEEESSCEEE-ECCSCEEEEEEEEEE
T ss_pred             eCCCceeEEEEEEEEEcCcCCCCEEEEccCcEEEEeEccCCCCCEEEEEECCEECCCCCcEEEE-ecccCCCcEEEEEEE
Confidence            5320              0 111  1123367888971         122222       2232 224789999999999


Q ss_pred             cCCC
Q psy534          126 HVLY  129 (145)
Q Consensus       126 n~~g  129 (145)
                      |.+|
T Consensus       166 N~~~  169 (182)
T 1hnf_A          166 NKVS  169 (182)
T ss_dssp             CSSC
T ss_pred             eCCC
Confidence            9998

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.40  E-value=2.7e-12  Score=88.95  Aligned_cols=120  Identities=15%  Similarity=0.141  Sum_probs=80.3

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCC--CCc--------------ccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSY--PTH--------------EAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~--~~~--------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      ...+..+.+.|-+.|.|  .+.+.||++.  ...              ....+.+|+.+..+ ...++++|.|.+++.+|
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~~D   90 (219)
T 1c1e_H           12 KKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLE-TSATTAYLQINNLKNED   90 (219)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEE-GGGTEEEEEECSCCGGG
T ss_pred             ecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEe-cCCCEEEEEECCCCccc
Confidence            45677888899998765  7889999873  111              01235678776432 12346899999999999


Q ss_pred             CEEEEEEEEEec--------------C-C-----C--------CCCCCCcEEEEEEeEE-----------ecC-------
Q psy534           70 QGWYECKVVFLN--------------R-S-----P--------NSHKNGTWFHLDVHGV-----------FND-------  103 (145)
Q Consensus        70 ~G~Y~C~~~~~~--------------~-~-----~--------~~~~~g~~~~l~c~~~-----------~~~-------  103 (145)
                      +|.|+|.+.+..              + .     |        .....|..+.|.|...           ..+       
T Consensus        91 ~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~  170 (219)
T 1c1e_H           91 MATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH  170 (219)
T ss_dssp             CEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE
T ss_pred             CEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCcccceE
Confidence            999999997631              0 0     1        0123588999999821           001       


Q ss_pred             --------C-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 --------G-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 --------~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                              +     ..|.|. ....|.|.|+|.|.|..+
T Consensus       171 ~~~~~~~~~~~~~~s~L~i~-~~~~d~g~Y~C~a~n~~~  208 (219)
T 1c1e_H          171 TFPAVLQSDLYTLSSSVTVP-SSPRPSETVTCNVAHPAS  208 (219)
T ss_dssp             ECCCEESSSCEEEEEEEEEE-SSSTTTSCCEEEEEEGGG
T ss_pred             ecCCcccCCeEEEEEEEEEe-cccCCCCEEEEEEEeCCC
Confidence                    1     147773 344467999999999876

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.40  E-value=2.3e-12  Score=88.83  Aligned_cols=121  Identities=16%  Similarity=0.188  Sum_probs=81.3

Q ss_pred             HhhhccceeeEEeecCCC--ccEEEEecCCC-Cc--------------ccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            7 VKSIFQMLSVGDFADDED--IPVYIWYDSYP-TH--------------EAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p--~p~~~w~k~~~-~~--------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      .+..+..+.+-|.+.|.|  .+.+.||++.. ..              ..+.+.+|+.+..+ ...++.+|.|.+++.+|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~v~~~D   89 (210)
T 3d9a_H           11 LVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRD-TSKNQYYLDLNSVTTED   89 (210)
T ss_dssp             EECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEE-GGGTEEEEEECSCCGGG
T ss_pred             EecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEec-CCCCEEEEEECCCCccc
Confidence            345677888899988775  47899988631 10              11235678876432 11235799999999999


Q ss_pred             CEEEEEEEEEe---------cC------CC--------CCCCCCcEEEEEEeEE-----------ecCC-----------
Q psy534           70 QGWYECKVVFL---------NR------SP--------NSHKNGTWFHLDVHGV-----------FNDG-----------  104 (145)
Q Consensus        70 ~G~Y~C~~~~~---------~~------~~--------~~~~~g~~~~l~c~~~-----------~~~~-----------  104 (145)
                      +|.|+|.+.+.         .+      .|        .....|..+.|.|...           ..++           
T Consensus        90 ~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~  169 (210)
T 3d9a_H           90 TATYYCANWDGDYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAV  169 (210)
T ss_dssp             CEEEEEEETTSSCBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCE
T ss_pred             CEEEEEEEecCcccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcCCc
Confidence            99999998431         00      11        1123588999999820           0011           


Q ss_pred             ---------cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 ---------TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ---------~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                               ..|.|..+..+| |.|+|.|.|..|
T Consensus       170 ~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~  202 (210)
T 3d9a_H          170 LQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPAS  202 (210)
T ss_dssp             EETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGG
T ss_pred             cCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCC
Confidence                     237888888766 999999999987

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.40  E-value=8.9e-13  Score=92.41  Aligned_cols=120  Identities=14%  Similarity=0.134  Sum_probs=78.9

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC-Cc---c------------cccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP-TH---E------------AEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~-~~---~------------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|.+.+.+  .+.+.||++.. ..   +            ...+.+|+.+..+. ..++.+|.|.+++.+|
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~sL~I~~v~~~D   90 (227)
T 1mju_H           12 VKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDT-SSSTAYMQLSSLTSDD   90 (227)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEET-TTTEEEEEECSCCGGG
T ss_pred             EcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeC-CCCeEEEEECCCCccc
Confidence            45677888999988776  67899988641 10   0            12346788775331 3457899999999999


Q ss_pred             CEEEEEEEEEec-----------CC------CC--------CCCCCcEEEEEEeEE-----------ecC----------
Q psy534           70 QGWYECKVVFLN-----------RS------PN--------SHKNGTWFHLDVHGV-----------FND----------  103 (145)
Q Consensus        70 ~G~Y~C~~~~~~-----------~~------~~--------~~~~g~~~~l~c~~~-----------~~~----------  103 (145)
                      +|.|+|.+.+..           +.      |.        ....|..+.|.|...           ..+          
T Consensus        91 ~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~  170 (227)
T 1mju_H           91 SAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFP  170 (227)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECC
T ss_pred             CEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEECC
Confidence            999999996421           10      10        112488899999821           000          


Q ss_pred             -----C-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 -----G-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 -----~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                           +     ..|.|..+..+| |.|+|.|.|..+
T Consensus       171 ~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~  205 (227)
T 1mju_H          171 AVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPAS  205 (227)
T ss_dssp             CEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGG
T ss_pred             ceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCC
Confidence                 1     247777877777 999999999764

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.40  E-value=2.2e-12  Score=94.73  Aligned_cols=112  Identities=18%  Similarity=0.177  Sum_probs=82.3

Q ss_pred             hhccceeeEEeecCCC-ccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe--c--C-
Q psy534            9 SIFQMLSVGDFADDED-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL--N--R-   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~--~--~-   82 (145)
                      ..+..+.+.|-+.|.| .|.+.|+|++....  .-..|+..       .+.+|.|.+++.+|+|.|+|.+.+.  .  . 
T Consensus       141 ~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~--~~~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~  211 (329)
T 3oq3_B          141 HDKYGIDLYCGILYAKHYNNITWYKNNQELI--IDGTKYSQ-------SGQNLIIHNPELEDSGRYDCYVHYDDVRIKND  211 (329)
T ss_dssp             STTTCEEEECCCCSCCCCCEEEEEETTEECC--CSSSSEEE-------ETTEEEECSCCGGGCEEEEEEEEECCTTSSSC
T ss_pred             eCCCcEEEEeccCCCCCCceEEEEECCccCC--CCCceEec-------CCCEEEEeecChhhCEEEEEEEEecccCCCce
Confidence            3466788899888999 99999999985421  11223332       1588999999999999999999864  1  0 


Q ss_pred             -------------CC-------C----CCCCCcEEEEEEeEE-------------ecC----------------------
Q psy534           83 -------------SP-------N----SHKNGTWFHLDVHGV-------------FND----------------------  103 (145)
Q Consensus        83 -------------~~-------~----~~~~g~~~~l~c~~~-------------~~~----------------------  103 (145)
                                   ++       .    ....|+.+.|.|...             ..+                      
T Consensus       212 ~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~  291 (329)
T 3oq3_B          212 IVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGIT  291 (329)
T ss_dssp             EEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEE
T ss_pred             eEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCcee
Confidence                         11       0    123588999999821             000                      


Q ss_pred             CcEEEEcccCCCCCe-eeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIG-DYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G-~Y~C~a~n~~g  129 (145)
                      ...|.|.+++.+|+| .|+|.|.|..|
T Consensus       292 ~~~L~I~~v~~~D~G~~Y~C~a~N~~G  318 (329)
T 3oq3_B          292 EATLYFENVTEEYIGNTYTCRGHNYYF  318 (329)
T ss_dssp             EEEEEESSCCGGGTTCEEEEEEECSSC
T ss_pred             EeEEEEEeccHHHCCCcEEEEEEecCC
Confidence            135999999999999 99999999999

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.40  E-value=3e-12  Score=91.05  Aligned_cols=113  Identities=9%  Similarity=0.092  Sum_probs=77.3

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec------
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN------   81 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~------   81 (145)
                      ...+.++.+.|...+. .+.+.|||++.... ... .+.     .....+.+|.|.+++.+|+|.|+|.+.+..      
T Consensus        18 v~~G~~VtL~C~~~~~-~~~~~w~k~g~~~~-~~~-~~~-----~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S   89 (242)
T 1p6f_A           18 VPKEKQVTICCQGNYG-AVEYQLHFEGSLFA-VDR-PKP-----PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPS   89 (242)
T ss_dssp             EETTCCEEEEEECCTT-CCEEEEEETTEEEE-EEC-CSS-----CTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCC
T ss_pred             cCCCCcEEEEEeeCCC-CcEEEEEECCCccc-ccc-ccc-----cCCcceeEEEecCCCcccCeEEEEEEecCCccccCC
Confidence            3456778888988753 56799999874321 000 000     012347889999999999999999995421      


Q ss_pred             ------C-----CC------C-CCCCCcEEEEEEeE--------Ee-------------cCCcEEEEcccCCCCCeeeEE
Q psy534           82 ------R-----SP------N-SHKNGTWFHLDVHG--------VF-------------NDGTELRISNIRSQDIGDYTC  122 (145)
Q Consensus        82 ------~-----~~------~-~~~~g~~~~l~c~~--------~~-------------~~~~~L~i~~v~~~d~G~Y~C  122 (145)
                            +     .|      . ....|+.++|.|..        ..             .....|.|.+++.+|+|.|+|
T Consensus        90 ~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~l~I~~v~~~d~G~Y~C  169 (242)
T 1p6f_A           90 NLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRC  169 (242)
T ss_dssp             CCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEECTTSCSEEEEEECSSSCEEEEEECSSEEEEEEEECCGGGCEEEEE
T ss_pred             cceEEEeecccCCCceEccCCCccCCCCcEEEEEecCCCCCEEEEEECCCccCccccCCCceEEEEeCCCccccCEEEEE
Confidence                  0     01      1 12359999999981        11             123479999999999999999


Q ss_pred             EEecCC
Q psy534          123 LATHVL  128 (145)
Q Consensus       123 ~a~n~~  128 (145)
                      .|.|..
T Consensus       170 ~a~n~~  175 (242)
T 1p6f_A          170 FGSYNN  175 (242)
T ss_dssp             EEEEET
T ss_pred             EEECCC
Confidence            999863

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.40  E-value=3.4e-13  Score=93.35  Aligned_cols=105  Identities=17%  Similarity=0.175  Sum_probs=75.9

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec-------
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN-------   81 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-------   81 (145)
                      ..+.++.+.|-+   |.+.+.|+|++... ...      .      ..+.+|.|.+++.+|+|.|+|.+.+..       
T Consensus        16 ~~G~~v~L~C~~---p~~~i~W~k~g~~l-~~~------~------~~~~~L~i~~v~~~DsG~Y~C~~~~~~s~~~~v~   79 (204)
T 1sy6_A           16 QEDGSVLLTCDA---EAKNITWFKDGKMI-GFL------T------EDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVY   79 (204)
T ss_dssp             CSSSEEEEEECS---CSSEEEEEETTEEE-EEE------E------SSCCCEEEEEGGGCCEEEEEEESSSSCCCCEEEE
T ss_pred             cCCCeEEEEEcC---CCCEEEEEECCEEC-CCC------C------CCCCeEEeCCCCcCCCEEEEEEecCCCCeeEEEE
Confidence            456788888877   78999999987431 100      0      136789999999999999999862210       


Q ss_pred             -C--------------------------------------CCCCCC-CCcEEEEEEeE-------------Ee-------
Q psy534           82 -R--------------------------------------SPNSHK-NGTWFHLDVHG-------------VF-------  101 (145)
Q Consensus        82 -~--------------------------------------~~~~~~-~g~~~~l~c~~-------------~~-------  101 (145)
                       .                                      .+.... .|..+.|.|.+             ..       
T Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~g~p~p~i~W~k~~~~l~~~~~~~  159 (204)
T 1sy6_A           80 YRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDK  159 (204)
T ss_dssp             EEC------------------------------------CCCCEEEEETTEEEEECSCCCSSCEEEEETTEEESCCTTCT
T ss_pred             EEEeccccccccccccccccccccccccccccccccceecCCceeeecCCcEEEEcCCCCCCceEEEECCEECCCccCCc
Confidence             0                                      001112 68999999972             00       


Q ss_pred             ---cCCcEEEEccc-CCCCCeeeEEEEecCCC
Q psy534          102 ---NDGTELRISNI-RSQDIGDYTCLATHVLY  129 (145)
Q Consensus       102 ---~~~~~L~i~~v-~~~d~G~Y~C~a~n~~g  129 (145)
                         ..+..|.|.++ +.+|+|.|+|.|.|..|
T Consensus       160 ~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g  191 (204)
T 1sy6_A          160 NIGSDEDHLSLKEFSELEQSGYYVCYPRGSKP  191 (204)
T ss_dssp             TEEEETTEEEETTCCHHHHCEEEEEEETTSCG
T ss_pred             eEecCCCEEEEeeCCccccCEEEEEEeccCCC
Confidence               02347999999 99999999999999998

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.40  E-value=5.7e-13  Score=91.82  Aligned_cols=119  Identities=18%  Similarity=0.099  Sum_probs=80.6

Q ss_pred             hhhccceeeEEeecCCC---ccEEEEecCCC-Ccc----------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEE
Q psy534            8 KSIFQMLSVGDFADDED---IPVYIWYDSYP-THE----------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWY   73 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p---~p~~~w~k~~~-~~~----------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   73 (145)
                      ...+..+.+-|.+.|.|   .+.+.||++.. ...          ...+.+|+.+..   ..+..+|.|.+++.+|+|.|
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y   88 (212)
T 1q0x_L           12 TSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL---IGDKAALTITGAQTEDEAIY   88 (212)
T ss_dssp             ECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCEEE
T ss_pred             ecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEe---eCCEEEEEECCCCccCCEEE
Confidence            45677888999998877   47899998642 111          123456665432   13467999999999999999


Q ss_pred             EEEEEEec-----------C------CCCC--------CCCCcEEEEEEeE-----------EecC--------------
Q psy534           74 ECKVVFLN-----------R------SPNS--------HKNGTWFHLDVHG-----------VFND--------------  103 (145)
Q Consensus        74 ~C~~~~~~-----------~------~~~~--------~~~g~~~~l~c~~-----------~~~~--------------  103 (145)
                      .|.+.+..           +      +|..        ...|..+.|.|..           +..+              
T Consensus        89 ~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~  168 (212)
T 1q0x_L           89 FCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPS  168 (212)
T ss_dssp             EEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCE
T ss_pred             EEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCce
Confidence            99996431           0      1100        1147899999971           0000              


Q ss_pred             ----C-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 ----G-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ----~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                          +     ..|.|..+..+|+|.|+|.|.|...
T Consensus       169 ~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  203 (212)
T 1q0x_L          169 KQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH  203 (212)
T ss_dssp             ECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred             eCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCc
Confidence                1     1477888888999999999999854

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.39  E-value=5.1e-12  Score=100.18  Aligned_cols=111  Identities=22%  Similarity=0.324  Sum_probs=82.3

Q ss_pred             hccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-------
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-------   82 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-------   82 (145)
                      .+.++.+.|-+.| |.+.+.|++++... .  ...|+.+.     ..+.+|.|.+++.+|+|.|+|.+.+...       
T Consensus       125 ~g~~v~l~C~~~~-p~~~v~W~~~g~~l-~--~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~  195 (642)
T 1e07_A          125 DKDAVAFTCEPET-QDATYLWWVNNQSL-P--VSPRLQLS-----NGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSV  195 (642)
T ss_pred             cCCcEEEEEECCC-CCeeEEEEECCeEC-C--CCCceEEc-----CCCCEEEEeCCCcccCeeEEEEEecCCCCcccceE
Confidence            3556778888888 89999999987542 2  23455542     2367899999999999999999965321       


Q ss_pred             ------CC---------CCCCCCcEEEEEEeE---------E------ecCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534           83 ------SP---------NSHKNGTWFHLDVHG---------V------FNDGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus        83 ------~~---------~~~~~g~~~~l~c~~---------~------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                            .|         .....|+.+.|.|..         +      ......|.|.+++.+|+|.|+|.|.|..|
T Consensus       196 ~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  272 (642)
T 1e07_A          196 ILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNNSGSYTCQAHNSDT  272 (642)
T ss_pred             EEEEEeCCCCcEEecCCcccccCCEEEEEEEcCCCCCcEEEEEECCeEcccCCceEEecccccCCeEEEEEEEeCCC
Confidence                  11         113459999999982         1      12334799999999999999999999887

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.39  E-value=1.3e-12  Score=93.95  Aligned_cols=110  Identities=15%  Similarity=0.102  Sum_probs=78.0

Q ss_pred             hccceeeEEeecCCCc-cEEEEe-cCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCE-EEEEEEEEec-----
Q psy534           10 IFQMLSVGDFADDEDI-PVYIWY-DSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQG-WYECKVVFLN-----   81 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~-p~~~w~-k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G-~Y~C~~~~~~-----   81 (145)
                      .+.++.+.|-+.| |. +.+.|+ +++.. +..  ..++...      .+..|.|.+++.+|+| .|.|.+.+..     
T Consensus       105 ~g~~v~l~C~~~~-p~~~~v~W~~~~g~~-l~~--~~~~~~~------~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s  174 (290)
T 2o26_X          105 EDSDALVRCPLTD-PQVSQYSLIECDGKS-LPT--DLTFVPN------PKAGITIKNVKRAYHRLCVRCAAQRDGTWLHS  174 (290)
T ss_dssp             TTSCEEECCCBSC-CSCEEEEEEETTSCC-CCT--TCEEEEE------TTTEEEEESCCGGGTTCEEEEEEEETTEEEEC
T ss_pred             cCCeEEEeCcCCC-CCCceEEEEeCCCcC-CCC--CCceeeC------CCCCEEEecccHHHCCCEEEEEEEECCceEEe
Confidence            4566777888876 77 999995 55533 221  2344442      2568999999999999 9999996521     


Q ss_pred             ------------CCC--------CCCCCCcEEEEEEeEE----------e------------------------cCCcEE
Q psy534           82 ------------RSP--------NSHKNGTWFHLDVHGV----------F------------------------NDGTEL  107 (145)
Q Consensus        82 ------------~~~--------~~~~~g~~~~l~c~~~----------~------------------------~~~~~L  107 (145)
                                  .+|        .....|+.+.|.|...          .                        .....|
T Consensus       175 ~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  254 (290)
T 2o26_X          175 DKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETL  254 (290)
T ss_dssp             CCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEE
T ss_pred             EEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEE
Confidence                        011        1134589999999810          0                        012369


Q ss_pred             EEcccCCCCCeeeEEEEecCCC
Q psy534          108 RISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       108 ~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.+++.+|+|.|+|.|.|..|
T Consensus       255 ~I~~v~~~d~G~Y~C~a~N~~g  276 (290)
T 2o26_X          255 TISSARVDDSGVFMCYANNTFG  276 (290)
T ss_dssp             EESSCCSSSCEEEEEEEECSSC
T ss_pred             EEcCCCcccCeEEEEEEeCCCC
Confidence            9999999999999999999999

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.39  E-value=3.8e-13  Score=94.91  Aligned_cols=121  Identities=17%  Similarity=0.164  Sum_probs=71.7

Q ss_pred             hhccceeeEEeecCCCccE-----EEEecCCCCcc------------cccccceEEEecCCCCCCeeeEEEcccCCCCCE
Q psy534            9 SIFQMLSVGDFADDEDIPV-----YIWYDSYPTHE------------AEEYKGRISRVDKESPFGMASLNLTKIRESDQG   71 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~-----~~w~k~~~~~~------------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G   71 (145)
                      ..+.++.+.|-+.|.|.+.     +.|+++.....            ...+.+|..+.......++.+|.|.+++.+|+|
T Consensus        16 ~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D~G   95 (248)
T 3pv7_A           16 PLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAG   95 (248)
T ss_dssp             ETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCCGGGCE
T ss_pred             eCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCCHHHCe
Confidence            4567788888888777665     99998743211            011222222211112245778999999999999


Q ss_pred             EEEEEEEEec----------C--CC-------CCCCCCcEEEEEEeE-----------EecC------------------
Q psy534           72 WYECKVVFLN----------R--SP-------NSHKNGTWFHLDVHG-----------VFND------------------  103 (145)
Q Consensus        72 ~Y~C~~~~~~----------~--~~-------~~~~~g~~~~l~c~~-----------~~~~------------------  103 (145)
                      .|+|.+.+..          +  +|       .....+..+.|.|..           +..+                  
T Consensus        96 ~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~  175 (248)
T 3pv7_A           96 EYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGP  175 (248)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEBCCEEEEECC--------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTTEEEEE
T ss_pred             EEEEEEEeCCccceeEEEEEEecCCceEEecCCccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccccccceeecc
Confidence            9999995422          0  11       112346677788971           0000                  


Q ss_pred             ------C-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 ------G-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ------~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                            +     ..|.|.....+|.|.|+|.|+|..+
T Consensus       176 ~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~  212 (248)
T 3pv7_A          176 TIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASL  212 (248)
T ss_dssp             EEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTC
T ss_pred             cEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCC
Confidence                  1     2466777788899999999999887

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.39  E-value=3.4e-12  Score=90.01  Aligned_cols=117  Identities=17%  Similarity=0.219  Sum_probs=80.8

Q ss_pred             hhhccceeeEEeecCCC-----ccEEEEecCCC-Ccc----------cccccceEEEecCCCCCCeeeEEEcccCCCCCE
Q psy534            8 KSIFQMLSVGDFADDED-----IPVYIWYDSYP-THE----------AEEYKGRISRVDKESPFGMASLNLTKIRESDQG   71 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p-----~p~~~w~k~~~-~~~----------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G   71 (145)
                      ...+..+.+-|-+.+.|     .+.+.||++.. ...          ...+.+|+.+..   .....+|.|.+++.+|+|
T Consensus        13 v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G   89 (247)
T 1svz_A           13 VSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG---SGTDFTLKISRVEAEDLG   89 (247)
T ss_dssp             ECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCE
T ss_pred             ecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEecc---CCCEEEEEECCCCHHHCE
Confidence            45677889999999887     68899998531 100          012345666532   134678999999999999


Q ss_pred             EEEEEEEEec-----------C--C------------CC---------CCCCCcEEEEEEeEE-----------ec----
Q psy534           72 WYECKVVFLN-----------R--S------------PN---------SHKNGTWFHLDVHGV-----------FN----  102 (145)
Q Consensus        72 ~Y~C~~~~~~-----------~--~------------~~---------~~~~g~~~~l~c~~~-----------~~----  102 (145)
                      .|+|.+.+..           +  +            +.         ....|+.+.|.|...           +.    
T Consensus        90 ~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~  169 (247)
T 1svz_A           90 IYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPG  169 (247)
T ss_dssp             EEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred             EEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEeCCC
Confidence            9999985421           0  1            10         123588999999810           00    


Q ss_pred             ----------------------C------------CcEEEEcccCCCCCeeeEEEEecC
Q psy534          103 ----------------------D------------GTELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       103 ----------------------~------------~~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                                            .            ...|.|.+++.+|+|.|+|.|.|.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          170 GDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             CCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             CCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence                                  0            026899999999999999999995

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.39  E-value=1.6e-13  Score=101.75  Aligned_cols=114  Identities=11%  Similarity=0.054  Sum_probs=83.0

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCE-EEEEEEEEecC----
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQG-WYECKVVFLNR----   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G-~Y~C~~~~~~~----   82 (145)
                      ...+.++.+.|-+.|.|.|.+.|++++.......  .+.      .....++|.|.+++.+|+| .|.|.+.+...    
T Consensus       170 v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~--~~~------~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~  241 (347)
T 2ifg_A          170 VDVGDDVLLRCQVEGRGLEQAGWILTELEQSATV--MKS------GGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEV  241 (347)
T ss_dssp             CBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEE--CCC------CCSSEEEEEEESCCSTTTTCCEEECCEETTEECCE
T ss_pred             EeCCCcEEEEEEEecCCCCEEEEEcCCceeeccc--ccc------eecccceEEEeeCChHHCCCeEEEEEEcCCCCEEE
Confidence            3456778888999999999999999875422111  111      1245889999999999999 99999965421    


Q ss_pred             --------CCC----CCCCCcEEEEEEeE---------Ee------c----------C--------CcEEEEcccCCCCC
Q psy534           83 --------SPN----SHKNGTWFHLDVHG---------VF------N----------D--------GTELRISNIRSQDI  117 (145)
Q Consensus        83 --------~~~----~~~~g~~~~l~c~~---------~~------~----------~--------~~~L~i~~v~~~d~  117 (145)
                              +|.    ....|..+.|.|..         +.      .          .        ...|.|.+++.+|+
T Consensus       242 ~~~l~V~~~P~i~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~  321 (347)
T 2ifg_A          242 SVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNN  321 (347)
T ss_dssp             EECCCCBEEEEEEECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGC
T ss_pred             EEEEEEcCCCeeeeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccC
Confidence                    111    12348889999981         00      0          0        22499999999999


Q ss_pred             eeeEEEEecCCC
Q psy534          118 GDYTCLATHVLY  129 (145)
Q Consensus       118 G~Y~C~a~n~~g  129 (145)
                      |.|+|.|.|..|
T Consensus       322 G~Y~C~a~N~~G  333 (347)
T 2ifg_A          322 GNYTLLAANPFG  333 (347)
T ss_dssp             EEEEEEEEETTE
T ss_pred             ceEEEEEecCCC
Confidence            999999999998

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.38  E-value=2e-13  Score=101.69  Aligned_cols=113  Identities=18%  Similarity=0.228  Sum_probs=82.7

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCC-CCCEEEEEEEEEecC-----
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRE-SDQGWYECKVVFLNR-----   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~-~D~G~Y~C~~~~~~~-----   82 (145)
                      ..+.++.+.|-+.|.|.+.+.|++++.. +......|..+.       +++|.|.++.. +|+|.|+|.+.+...     
T Consensus        20 ~~g~~v~l~C~~~g~p~~~v~W~k~g~~-~~~~~~~~~~~~-------~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~   91 (382)
T 1cs6_A           20 SAEEKVTLTCRARANPPATYRWKMNGTE-LKMGPDSRYRLV-------AGDLVISNPVKAKDAGSYQCVATNARGTVVSR   91 (382)
T ss_dssp             CSCCEEEECCEEEEESCCEEEEEETTEE-CCCSTTSSEEEE-------TTEEEEESCCHHHHCEEEEEEEEETTEEEECC
T ss_pred             CCCCcEEEEEEecCCCCCEEEEEECCEE-CCcCCCccEEee-------CCeEEEecccccccCEEEEEEEEcCCcEEEec
Confidence            4567888889998999999999998753 332334455542       56899999997 999999999965320     


Q ss_pred             ---------CC---C-----CCCCCcEEEEEEeE----------Ee-----------------cCCcEEEEcccCCCCCe
Q psy534           83 ---------SP---N-----SHKNGTWFHLDVHG----------VF-----------------NDGTELRISNIRSQDIG  118 (145)
Q Consensus        83 ---------~~---~-----~~~~g~~~~l~c~~----------~~-----------------~~~~~L~i~~v~~~d~G  118 (145)
                               +.   .     ....|+.+.|.|..          +.                 .....|.|.+++.+|+|
T Consensus        92 ~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  171 (382)
T 1cs6_A           92 EASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLG  171 (382)
T ss_dssp             CEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCE
T ss_pred             ceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEEEEEeeCcccCe
Confidence                     00   0     12358899999971          00                 12247999999999999


Q ss_pred             eeEEEEecCCC
Q psy534          119 DYTCLATHVLY  129 (145)
Q Consensus       119 ~Y~C~a~n~~g  129 (145)
                      .|+|.|.|..|
T Consensus       172 ~Y~C~~~n~~g  182 (382)
T 1cs6_A          172 NYSCFATSHID  182 (382)
T ss_dssp             EEEEEEEEEET
T ss_pred             eEEEEEEEccc
Confidence            99999999874

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.38  E-value=1.9e-13  Score=92.36  Aligned_cols=116  Identities=11%  Similarity=0.119  Sum_probs=70.8

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCc---------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTH---------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~---------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.++.+-|.+. .|.+.+.|++++...         ....|++|+.+.     ..+++|.|.+++.+|+|.|.|.+.+
T Consensus         8 ~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~-----~~~~sL~I~~v~~~DsG~Y~C~~~n   81 (171)
T 1ccz_A            8 VVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLD-----TVSGSLTIYNLTSSDEDEYEMESPN   81 (171)
T ss_dssp             ETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEEC-----TTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             EcCCCEEEcCCCC-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEe-----CCCCeEEECCCChhhCceEEEEEeC
Confidence            3455666666663 377788888775321         123467787763     3478999999999999999999843


Q ss_pred             ec--------C--C-CCCC--CCCcEEEEEEeE---------EecCCcE------EEEcccCCCCCeeeEEEEecCCCC
Q psy534           80 LN--------R--S-PNSH--KNGTWFHLDVHG---------VFNDGTE------LRISNIRSQDIGDYTCLATHVLYP  130 (145)
Q Consensus        80 ~~--------~--~-~~~~--~~g~~~~l~c~~---------~~~~~~~------L~i~~v~~~d~G~Y~C~a~n~~g~  130 (145)
                      ..        +  + +.+.  .......|.|..         +..++..      +.|.....+|+|.|+|.|.|.+|.
T Consensus        82 ~~~~~~~~L~V~~~~~~p~i~~~~~~~~L~C~~~~~p~p~i~W~~~~~~l~~~~~~~l~~~~~~~~g~Y~C~a~N~~~~  160 (171)
T 1ccz_A           82 ITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQ  160 (171)
T ss_dssp             CCSCEEEEEEEECCCCCCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESSSEEEEECSCCSSCEEEEEEETTEE
T ss_pred             CCCcEEEEEEEECcCCCCEEEEecCCcEEEEEeCCCCCcEEEEEECCEECcCCcceEEEEeccCCCceEEEEEEcccCc
Confidence            21        1  1 1110  011113688971         1222211      122223367899999999999983

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.38  E-value=3.2e-12  Score=99.07  Aligned_cols=120  Identities=17%  Similarity=0.146  Sum_probs=84.5

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC-Ccc----------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP-THE----------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~-~~~----------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      ....+.++.+.|-+.|.|.+.+.|||++. ...          ...+.+|+....   .....+|.|.+++.+|+|.|+|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y~C   87 (523)
T 2rcj_C           11 SGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSK---SGTSASLAISGLEAEDESDYYC   87 (523)
T ss_pred             EEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEec---CCCEEEEEECCCChhhCEEEEE
Confidence            34567788899999999999999998751 111          122346666421   2346789999999999999999


Q ss_pred             EEEEec-------------C------CCC--------CCCCCcEEEEEEeE-----------EecC--------------
Q psy534           76 KVVFLN-------------R------SPN--------SHKNGTWFHLDVHG-----------VFND--------------  103 (145)
Q Consensus        76 ~~~~~~-------------~------~~~--------~~~~g~~~~l~c~~-----------~~~~--------------  103 (145)
                      .+.+..             +      +|.        ....|+.+.|.|..           +..+              
T Consensus        88 ~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~  167 (523)
T 2rcj_C           88 ASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPS  167 (523)
T ss_pred             EEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEecccc
Confidence            997531             0      110        11247889999971           0000              


Q ss_pred             ----C-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 ----G-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ----~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                          +     ..|.|.+++.+|+|.|+|.|.|..|
T Consensus       168 ~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  202 (523)
T 2rcj_C          168 KQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGS  202 (523)
T ss_pred             ccCCCCEEEEEEEEEechhcCCCceEEEEEEecCc
Confidence                1     1488999999999999999999877

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.38  E-value=4e-12  Score=92.71  Aligned_cols=113  Identities=12%  Similarity=0.171  Sum_probs=70.8

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC------
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR------   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~------   82 (145)
                      ..+.++.+.|.+.+ +.+.+.|++++..........+...     ......|.|.+++.+|+|.|+|.+.+...      
T Consensus       131 ~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~-----~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~  204 (316)
T 3vh8_G          131 KSGERVILQCWSDI-MFEHFFLHKEGISKDPSRLVGQIHD-----GVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSA  204 (316)
T ss_dssp             ETTCCEEEEEEESS-CCSEEEEEETTCCSCCEEEECEEET-----TEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCC
T ss_pred             CCCCeEEEEEcCCC-CCcEEEEEECCCccccceeeeeecC-----CCceEEEEECCCChhhCceEEEEEecCCCCccccC
Confidence            34667788898854 4567889998754221111111110     12378899999999999999999975310      


Q ss_pred             --------------CC-------CCCCCCcEEEEEEeE--------E---------------ecCC---cEEEEcccCCC
Q psy534           83 --------------SP-------NSHKNGTWFHLDVHG--------V---------------FNDG---TELRISNIRSQ  115 (145)
Q Consensus        83 --------------~~-------~~~~~g~~~~l~c~~--------~---------------~~~~---~~L~i~~v~~~  115 (145)
                                    ++       .....|+.+.|.|..        .               ...+   ..|.|.+++  
T Consensus       205 ~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--  282 (316)
T 3vh8_G          205 PSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--  282 (316)
T ss_dssp             CCCCEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEEESSCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-----
T ss_pred             CCCCEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEECCCCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--
Confidence                          00       123459999999981        0               0111   368899998  


Q ss_pred             CCeeeEEEEecCCC
Q psy534          116 DIGDYTCLATHVLY  129 (145)
Q Consensus       116 d~G~Y~C~a~n~~g  129 (145)
                      |+|.|+|.|.|..+
T Consensus       283 D~G~Y~C~a~n~~~  296 (316)
T 3vh8_G          283 HGGTYRCFGSFRHS  296 (316)
T ss_dssp             --CEEEEEEEBTTB
T ss_pred             CCEEEEEEeecCCC
Confidence            99999999999654

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.37  E-value=1.6e-12  Score=89.45  Aligned_cols=119  Identities=18%  Similarity=0.212  Sum_probs=79.9

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC---Cc--------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP---TH--------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~~--------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      ...+.++.+-|.+.+.|.+.+.|||...   ..        ....+.+|+.+..   ..++.+|.|.+++.+|+|.|.|.
T Consensus        13 v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~   89 (213)
T 3r06_A           13 ASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSG---SGRDSSFTISSLESEDIGSYYCQ   89 (213)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCSEEEEE
T ss_pred             ecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEec---cCCEEEEEECCCCcccCEEEEEe
Confidence            4567888999999999999999998431   10        0112345665532   23578999999999999999999


Q ss_pred             EEEec-----------C-----CCCC--------CCCCcEEEEEEeE-----------EecC------------------
Q psy534           77 VVFLN-----------R-----SPNS--------HKNGTWFHLDVHG-----------VFND------------------  103 (145)
Q Consensus        77 ~~~~~-----------~-----~~~~--------~~~g~~~~l~c~~-----------~~~~------------------  103 (145)
                      +.+..           +     +|..        ...|..+.|.|..           +..+                  
T Consensus        90 ~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~  169 (213)
T 3r06_A           90 QYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSK  169 (213)
T ss_dssp             ECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTT
T ss_pred             cccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCC
Confidence            95421           0     1100        1136789999971           0001                  


Q ss_pred             -C-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 -G-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 -~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                       +     ..|.|.....+|+|.|+|.|+|...
T Consensus       170 ~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~  201 (213)
T 3r06_A          170 DSTYSLSSTLSLTKADYERHNLYTCEVTHKTS  201 (213)
T ss_dssp             TCCEEEEEEEEEEHHHHHTCCEEEEEEEETTC
T ss_pred             CCcEEEEEEEEeCHHHhccCCeEEEEEEeccc
Confidence             1     1456677777789999999999864

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.37  E-value=2.7e-13  Score=93.43  Aligned_cols=119  Identities=14%  Similarity=0.131  Sum_probs=81.1

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC-Ccc----------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP-THE----------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~-~~~----------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      ...+.++.+.|.+.+.|.+.+.||++.. ...          ...+.+|+.+..   .....+|.|.+++.+|+|.|.|.
T Consensus        11 v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~   87 (212)
T 1nfd_E           11 VTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST---SGTTATLTISGAQPEDEAAYYCL   87 (212)
T ss_dssp             EETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE---ETTEEEEEETTCCGGGCSEEEEE
T ss_pred             EeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEe---eCCEEEEEECcCCcccCEEEEEE
Confidence            4567788889998888888899998531 111          122356666532   13467999999999999999999


Q ss_pred             EEEe-------c------C------CCCC--------CCCCcEEEEEEeEE-----------ecCC--------------
Q psy534           77 VVFL-------N------R------SPNS--------HKNGTWFHLDVHGV-----------FNDG--------------  104 (145)
Q Consensus        77 ~~~~-------~------~------~~~~--------~~~g~~~~l~c~~~-----------~~~~--------------  104 (145)
                      +.+.       .      +      +|..        ...|..+.|.|...           +.++              
T Consensus        88 ~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~  167 (212)
T 1nfd_E           88 SSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSK  167 (212)
T ss_dssp             EEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBC
T ss_pred             EEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCcee
Confidence            9841       0      0      1100        11377899999711           0011              


Q ss_pred             --------cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 --------TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 --------~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                              ..|.|.+++.+|+|.|+|.|.|..+
T Consensus       168 ~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  200 (212)
T 1nfd_E          168 QGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGE  200 (212)
T ss_dssp             SSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTT
T ss_pred             cCCCceEEEEEEEchhhcCCCCeEEEEEEeCCc
Confidence                    1277888999999999999999876

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.37  E-value=6.5e-12  Score=102.05  Aligned_cols=120  Identities=19%  Similarity=0.222  Sum_probs=82.1

Q ss_pred             hhccceeeEEeecCCCc-cEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-----
Q psy534            9 SIFQMLSVGDFADDEDI-PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-----   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~-p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-----   82 (145)
                      ..+.++.+.|-+.+.+. +.+.|++++... ...........    ......|.|.+++.+|+|.|+|.+.+...     
T Consensus       632 ~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l-~~~~~~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~  706 (816)
T 3dmk_A          632 QVGQYLTLHCSVPGGDLPLNIDWTLDGQAI-SEDLGITTSRV----GRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFT  706 (816)
T ss_dssp             ESSCEEEEEEBCCCSSSCCEEEEEETTBCC-CGGGTCEEEEE----TTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CCCCeEEEEEEEeCCCCCCEEEEEECCeEc-CCCCCeeEEEc----CCCeeEEEEccCChhhCEEEEEEEEeCCccEEEE
Confidence            45667788898876554 489999998542 21111111111    13467899999999999999999965321     


Q ss_pred             -------C------CC--CCCCCcEEEEEEeEE---------e--------------------cCCcEEEEcccCCCCCe
Q psy534           83 -------S------PN--SHKNGTWFHLDVHGV---------F--------------------NDGTELRISNIRSQDIG  118 (145)
Q Consensus        83 -------~------~~--~~~~g~~~~l~c~~~---------~--------------------~~~~~L~i~~v~~~d~G  118 (145)
                             +      +.  ....|..+.|.|...         .                    .....|.|.+++.+|+|
T Consensus       707 ~~l~V~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  786 (816)
T 3dmk_A          707 TPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEG  786 (816)
T ss_dssp             EEECEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEECCEECSSSTTCCBCCCCBTTEEEETTEEEECSCCGGGCE
T ss_pred             EEEEEEeCCceeeecccceecCCCcEEEEEEEecCCCCeEEEEecCCCCCccccccccCCCEEecCCEEEECcCChhhCe
Confidence                   1      11  123589999999810         0                    01237999999999999


Q ss_pred             eeEEEEecCCCCcEE
Q psy534          119 DYTCLATHVLYPDLL  133 (145)
Q Consensus       119 ~Y~C~a~n~~g~~~~  133 (145)
                      .|+|.|.|.+|....
T Consensus       787 ~Y~C~a~N~~G~~~~  801 (816)
T 3dmk_A          787 YYLCEAINGIGSGLS  801 (816)
T ss_dssp             EEEEEEECSSSSCEE
T ss_pred             EEEEEEEeCCCCCcE
Confidence            999999999994333

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.37  E-value=6.7e-12  Score=87.44  Aligned_cols=121  Identities=14%  Similarity=0.132  Sum_probs=83.0

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC-C--c-------------ccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP-T--H-------------EAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~-~--~-------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|.+.+.+  .+.+.||+... .  .             ....+.+|+.+..+ ...++.+|.|.+++.+|
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~~D   90 (220)
T 2fbj_H           12 VQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRD-NAKNSLYLQMSKVRSED   90 (220)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEC-SSSCEEEEEECSCCGGG
T ss_pred             ecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEee-CCCCEEEEEECCCChhh
Confidence            45677888889888765  57789987531 1  0             11235678887543 23457899999999999


Q ss_pred             CEEEEEEEEEec-------------C------CC-------CCCCCCcEEEEEEeEE------------e----------
Q psy534           70 QGWYECKVVFLN-------------R------SP-------NSHKNGTWFHLDVHGV------------F----------  101 (145)
Q Consensus        70 ~G~Y~C~~~~~~-------------~------~~-------~~~~~g~~~~l~c~~~------------~----------  101 (145)
                      +|.|+|.+.+..             +      +|       .....|..+.|.|...            .          
T Consensus        91 sG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~  170 (220)
T 2fbj_H           91 TALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVN  170 (220)
T ss_dssp             CEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEE
T ss_pred             CEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEe
Confidence            999999986420             0      01       0123588899999710            0          


Q ss_pred             ------cCC-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          102 ------NDG-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       102 ------~~~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                            .++     ..|.|.....+|.|.|+|.|.|..+
T Consensus       171 ~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~  209 (220)
T 2fbj_H          171 FPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSN  209 (220)
T ss_dssp             CCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTS
T ss_pred             cCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCC
Confidence                  011     1377878888899999999999988

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.37  E-value=5.4e-12  Score=92.32  Aligned_cols=122  Identities=13%  Similarity=0.139  Sum_probs=80.1

Q ss_pred             hhhccceeeEEeecCC-CccEEEEecCCCCcc------cccccceEEEecCCC--CCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDE-DIPVYIWYDSYPTHE------AEEYKGRISRVDKES--PFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~-p~p~~~w~k~~~~~~------~~~~~~R~~~~~~~~--~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+.++.+.|-+.|. |.+.+.|||++....      ......|+....+..  .....+|.|.+++.+|+|.|+|.+.
T Consensus        15 v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   94 (327)
T 2wng_A           15 VAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKF   94 (327)
T ss_dssp             EETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEEEEEE
T ss_pred             EecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEEEEEee
Confidence            3456788888999887 889999999875311      011123555433211  1347789999999999999999996


Q ss_pred             Eec---------------C--CC---------CCCCCCcEEEEEEeE-----------EecC-----------------C
Q psy534           79 FLN---------------R--SP---------NSHKNGTWFHLDVHG-----------VFND-----------------G  104 (145)
Q Consensus        79 ~~~---------------~--~~---------~~~~~g~~~~l~c~~-----------~~~~-----------------~  104 (145)
                      +..               +  .+         .....|+.+.|.|..           +..+                 +
T Consensus        95 n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~  174 (327)
T 2wng_A           95 RKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESV  174 (327)
T ss_dssp             ESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEECSSCCS
T ss_pred             cCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccccccccccCCC
Confidence            531               0  11         113459999999981           0000                 1


Q ss_pred             -----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 -----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 -----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                           ..|.|.....+|.|.|+|.|.|..+
T Consensus       175 ~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~  204 (327)
T 2wng_A          175 SYSIHSTAKVVLTREDVHSQVICEVAHVTL  204 (327)
T ss_dssp             CEEEEEEEEEECCTTGGGCEEEEEEECTTS
T ss_pred             ceEEEEEEEEechhcCcCceEEEEEecccc
Confidence                 1355555556668999999999876

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.37  E-value=2.1e-12  Score=96.14  Aligned_cols=114  Identities=15%  Similarity=0.196  Sum_probs=81.5

Q ss_pred             hccceeeEEeecCCC---ccEEEEecCCCCccc--ccccceEEEecCCCCCCeeeEEEcccCCCCC-EEEEEEEEEecC-
Q psy534           10 IFQMLSVGDFADDED---IPVYIWYDSYPTHEA--EEYKGRISRVDKESPFGMASLNLTKIRESDQ-GWYECKVVFLNR-   82 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p---~p~~~w~k~~~~~~~--~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C~~~~~~~-   82 (145)
                      .+.++.+.|-+.+.+   .+.+.|++++.....  ..+.+|..+.      .+++|.|.+++.+|+ |.|+|.+.+... 
T Consensus       117 ~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~------~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~  190 (388)
T 2v5m_A          117 RGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL------PSGELHIREVGPEDGYKSYQCRTKHRLTG  190 (388)
T ss_dssp             TTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEEC------TTSCEEESSCCGGGGGCCEEEEEEETTTC
T ss_pred             cCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEc------cCCcEEEecCCccccCeeEEEEeccCCCC
Confidence            455677778777653   488999999764322  2345666652      367899999999999 999999965310 


Q ss_pred             ---------------C--------CC------CCCCCcEEEEEEeE---------Ee-------------------cCCc
Q psy534           83 ---------------S--------PN------SHKNGTWFHLDVHG---------VF-------------------NDGT  105 (145)
Q Consensus        83 ---------------~--------~~------~~~~g~~~~l~c~~---------~~-------------------~~~~  105 (145)
                                     +        +.      ....|+.+.|.|..         +.                   ..+.
T Consensus       191 ~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~  270 (388)
T 2v5m_A          191 ETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSG  270 (388)
T ss_dssp             CEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEEETT
T ss_pred             ceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceecccC
Confidence                           1        00      01238889999981         10                   0124


Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|+|.|.|..|
T Consensus       271 ~L~i~~v~~~d~G~Y~C~a~n~~g  294 (388)
T 2v5m_A          271 TLIIKDAVVEDSGKYLCVVNNSVG  294 (388)
T ss_dssp             EEEESSCCGGGCEEEEEEEECSSC
T ss_pred             EEEECcCCHHHCeEEEEEEecCCC
Confidence            799999999999999999999998

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.36  E-value=8.9e-13  Score=92.01  Aligned_cols=119  Identities=16%  Similarity=0.183  Sum_probs=80.0

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC---Cc--------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP---TH--------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~~--------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      ...+.++.+.|-+.+.|.+.+.||+...   ..        ......+|+....   ..++.+|.|.+++.+|+|.|+|.
T Consensus        36 v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~  112 (237)
T 3sob_L           36 ASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG---SGTDFTLTISSLQPEDFATYYCQ  112 (237)
T ss_dssp             EETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEc---CCCEEEEEECCCChhhCeEEEEe
Confidence            4456788889999988899999998531   10        0112234555431   13578999999999999999999


Q ss_pred             EEEec-----------C-----CCCC--------CCCCcEEEEEEeEE-----------e------c-------------
Q psy534           77 VVFLN-----------R-----SPNS--------HKNGTWFHLDVHGV-----------F------N-------------  102 (145)
Q Consensus        77 ~~~~~-----------~-----~~~~--------~~~g~~~~l~c~~~-----------~------~-------------  102 (145)
                      +.+..           +     +|..        ...|..+.|.|...           .      .             
T Consensus       113 ~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~  192 (237)
T 3sob_L          113 QSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSK  192 (237)
T ss_dssp             ECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTT
T ss_pred             eccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccccC
Confidence            95421           0     1100        11377899999710           0      0             


Q ss_pred             CC-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 DG-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ~~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ++     ..|.|.....+|+|.|+|.|+|...
T Consensus       193 ~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  224 (237)
T 3sob_L          193 DSTYSLSSTLTLSKADYEKHKVYACEVTHQGL  224 (237)
T ss_dssp             TCCEEEEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             CCcEEEEEEEEEcHHHccCCCcEEEEEeeCCC
Confidence            11     2367888888999999999999875

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.36  E-value=2.2e-12  Score=94.20  Aligned_cols=119  Identities=16%  Similarity=0.260  Sum_probs=80.5

Q ss_pred             hhccceeeEEeecCC----CccEEEEecCCC--------------CcccccccceEEEecCCCCCCeeeEEEcccCCCCC
Q psy534            9 SIFQMLSVGDFADDE----DIPVYIWYDSYP--------------THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQ   70 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~----p~p~~~w~k~~~--------------~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   70 (145)
                      ..+.++.+.|-+.+.    +.+.+.|++++.              ..+...+.+|+.+..  ....+++|.|.+++.+|+
T Consensus        27 ~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~L~I~~v~~~D~  104 (331)
T 3u83_A           27 FIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLR--PSFTDGTIRLSRLELEDE  104 (331)
T ss_dssp             ETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESS--CSSSBCCEEECSCCGGGC
T ss_pred             EecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecc--cCCCCceEEEcccCcccC
Confidence            456677777877765    566799998531              112345678888752  234578999999999999


Q ss_pred             EEEEEEEEEec-------------CCC--------C--CCCCC---cEEEEEEe-E---------Ee-------------
Q psy534           71 GWYECKVVFLN-------------RSP--------N--SHKNG---TWFHLDVH-G---------VF-------------  101 (145)
Q Consensus        71 G~Y~C~~~~~~-------------~~~--------~--~~~~g---~~~~l~c~-~---------~~-------------  101 (145)
                      |.|.|.+....             ..|        .  ....|   +.+.|.|. .         +.             
T Consensus       105 G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~  184 (331)
T 3u83_A          105 GVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIR  184 (331)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEE
T ss_pred             cEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccceeE
Confidence            99999853211             011        1  02335   77999996 1         11             


Q ss_pred             -cCC-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          102 -NDG-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       102 -~~~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                       ..+     ..|.|..++.+|+|.|+|.|.|..|
T Consensus       185 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  218 (331)
T 3u83_A          185 NPNGTVTVISRYRLVPSREAHQQSLACIVNYHMD  218 (331)
T ss_dssp             CTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTE
T ss_pred             CCCCcEEEEEEEEEEeccccCCCEEEEEEecCCC
Confidence             011     2477777799999999999999987

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.36  E-value=1.1e-12  Score=98.02  Aligned_cols=115  Identities=20%  Similarity=0.176  Sum_probs=80.8

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEc----ccCCCCCEEEEEEEEEec---
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLT----KIRESDQGWYECKVVFLN---   81 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~----~v~~~D~G~Y~C~~~~~~---   81 (145)
                      ..+.++.+.|-+.|.|.+.+.|+|++.. +......|..+.     ..+++|.|.    +++.+|+|.|+|.+.+..   
T Consensus        30 ~~G~~v~l~C~~~g~p~~~v~W~k~g~~-l~~~~~~~~~~~-----~~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~  103 (404)
T 3p3y_A           30 DPRDNILIECEAKGNPAPSFHWTRNSRF-FNIAKDPRVSMR-----RRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTA  103 (404)
T ss_dssp             CSSSCCCCCEEECCSSCCEEEEEETTEE-CCGGGCSSCBCC-----SSSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEE
T ss_pred             cCCCCEEEEEEecCCCCCeEEEEECCEE-eeeecCCcceEe-----cCCceEEEEeccCCCCccCCEEEEEEEEcCCCeE
Confidence            4567788889999999999999998853 222223343332     236666665    899999999999996431   


Q ss_pred             --------C--CCC---------CCCCCcEEEEEEeE----------E---------------ecCCcEEEEcccCCCC-
Q psy534           82 --------R--SPN---------SHKNGTWFHLDVHG----------V---------------FNDGTELRISNIRSQD-  116 (145)
Q Consensus        82 --------~--~~~---------~~~~g~~~~l~c~~----------~---------------~~~~~~L~i~~v~~~d-  116 (145)
                              +  .+.         ....|+.+.|.|..          +               ......|.|.+++.+| 
T Consensus       104 ~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~  183 (404)
T 3p3y_A          104 LSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDM  183 (404)
T ss_dssp             EEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTTSCEEESSCCSGGG
T ss_pred             eeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCCCcEEEEeeeeccC
Confidence                    0  111         12358899999971          0               1123479999999999 


Q ss_pred             CeeeEEEEecCCC
Q psy534          117 IGDYTCLATHVLY  129 (145)
Q Consensus       117 ~G~Y~C~a~n~~g  129 (145)
                      +|.|+|.|.|..|
T Consensus       184 ~G~Y~C~a~n~~~  196 (404)
T 3p3y_A          184 QTDYSCNARFHFT  196 (404)
T ss_dssp             SSCBEEEEECTTT
T ss_pred             CcceEEEEEeccc
Confidence            5999999999876

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.36  E-value=4e-13  Score=99.79  Aligned_cols=121  Identities=7%  Similarity=-0.053  Sum_probs=79.3

Q ss_pred             hhccceeeEEeecC-----CCccEEEEecCCCCccccc-----ccceEEEecC--C-----CCCCeeeEEEcccCCCCCE
Q psy534            9 SIFQMLSVGDFADD-----EDIPVYIWYDSYPTHEAEE-----YKGRISRVDK--E-----SPFGMASLNLTKIRESDQG   71 (145)
Q Consensus         9 ~~~~~~~~~~w~~g-----~p~p~~~w~k~~~~~~~~~-----~~~R~~~~~~--~-----~~~~~~sL~I~~v~~~D~G   71 (145)
                      ..+.++.+.|-+.|     .|.|.+.|++++.......     -.+++.+...  +     ...+..+|.|.+++.+|+|
T Consensus       189 ~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  268 (363)
T 1wio_A          189 KEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAG  268 (363)
T ss_dssp             ETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCE
T ss_pred             ecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCc
Confidence            34667788887776     7899999999875422110     0223322110  0     0122559999999999999


Q ss_pred             EEEEEEEEe--cCCCC-------CCCCCcEEEEEEeE-----------EecC------CcEEEEcccCCCCCeeeEEEEe
Q psy534           72 WYECKVVFL--NRSPN-------SHKNGTWFHLDVHG-----------VFND------GTELRISNIRSQDIGDYTCLAT  125 (145)
Q Consensus        72 ~Y~C~~~~~--~~~~~-------~~~~g~~~~l~c~~-----------~~~~------~~~L~i~~v~~~d~G~Y~C~a~  125 (145)
                      .|.|.+.+.  .....       ....|..+.|.|..           +..+      +..|.|.+++.+|+|.|+|.|.
T Consensus       269 ~Y~C~a~n~~~~g~~~~~~~l~V~~v~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~  348 (363)
T 1wio_A          269 SGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEAGMWQCLLS  348 (363)
T ss_dssp             EEEEEECBTTTTCCEEEEEEEEEEEECCCSSSEEEEEESSCCTTCCEEEECSSSSCSEEESSSEEEESSCCSEEEEEEEC
T ss_pred             EEEEEEEEhhhcCeEEEEEeEEEEEecCCCeeEEEEEccccCCCccEEEEeCCCceeeeeeeeeeeeccccceeEEEEEe
Confidence            999999765  21000       01226778888872           1111      2357889999999999999999


Q ss_pred             cCCC
Q psy534          126 HVLY  129 (145)
Q Consensus       126 n~~g  129 (145)
                      |.-.
T Consensus       349 ~~~~  352 (363)
T 1wio_A          349 DSGQ  352 (363)
T ss_dssp             SSSS
T ss_pred             cCCe
Confidence            8754

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.36  E-value=6.5e-13  Score=97.49  Aligned_cols=114  Identities=17%  Similarity=0.290  Sum_probs=81.2

Q ss_pred             hhccceeeEEe-----ecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec--
Q psy534            9 SIFQMLSVGDF-----ADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN--   81 (145)
Q Consensus         9 ~~~~~~~~~~w-----~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--   81 (145)
                      ..+.++.+.|-     ..|.|.+.+.|++++....  .-..+....     .+.++|.|.+++.+|+|.|+|.+.+..  
T Consensus       133 ~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~--~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  205 (339)
T 3o4o_C          133 TLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLD--KDNEKFLSV-----RGTTHLLVHDVALEDAGYYRCVLTFAHEG  205 (339)
T ss_dssp             ETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCC--TTCSSEEEC-----TTSSEEEESSCCGGGCEEEEEEEECCBTT
T ss_pred             ECCCCEEEEecCCcccccCCCCceEEEecCCeeCC--CCCceeEEc-----CCcceEEEcccCHhhCeEEEEEEEECCCC
Confidence            34667788888     6788999999999875422  122344442     224689999999999999999996421  


Q ss_pred             ------------C-------CC------C--CCCCCcEEEEEEeE---E----------ec-------------------
Q psy534           82 ------------R-------SP------N--SHKNGTWFHLDVHG---V----------FN-------------------  102 (145)
Q Consensus        82 ------------~-------~~------~--~~~~g~~~~l~c~~---~----------~~-------------------  102 (145)
                                  +       +|      .  ....|+.+.|.|..   .          ..                   
T Consensus       206 ~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~  285 (339)
T 3o4o_C          206 QQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPR  285 (339)
T ss_dssp             BCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCC
T ss_pred             eEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecce
Confidence                        0       01      0  12348888888873   1          00                   


Q ss_pred             -----CCc-----EEEEcccCCCCC-eeeEEEEecCCC
Q psy534          103 -----DGT-----ELRISNIRSQDI-GDYTCLATHVLY  129 (145)
Q Consensus       103 -----~~~-----~L~i~~v~~~d~-G~Y~C~a~n~~g  129 (145)
                           ++.     .|.|.+++.+|+ |.|+|.|.|.+|
T Consensus       286 ~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G  323 (339)
T 3o4o_C          286 QEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLS  323 (339)
T ss_dssp             EECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTE
T ss_pred             EEecccCceEEEEEEEEEEechhhcCccEEEEEEeccC
Confidence                 111     699999999998 999999999999

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.36  E-value=2.7e-12  Score=92.72  Aligned_cols=120  Identities=19%  Similarity=0.242  Sum_probs=82.1

Q ss_pred             hhhccceeeEEeecCC--CccEEEEecCCCC----------------cccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDE--DIPVYIWYDSYPT----------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~--p~p~~~w~k~~~~----------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      ...+.++.+-|.+.+.  +.+.+.||+....                .....+.+|+.+..+ ......+|.|.+++.+|
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~v~~~D   90 (280)
T 3fku_X           12 KKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITAD-QSTRTAYMDLRSLRSED   90 (280)
T ss_dssp             ECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEE-TTTTEEEEEECSCCSTT
T ss_pred             ECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEe-CCCCEEEEEECCCChhh
Confidence            4567788889988865  5678999875310                111234467766421 22446799999999999


Q ss_pred             CEEEEEEEEEe--------c-----------CCC---------------C---------CCCCCcEEEEEEeEEe-----
Q psy534           70 QGWYECKVVFL--------N-----------RSP---------------N---------SHKNGTWFHLDVHGVF-----  101 (145)
Q Consensus        70 ~G~Y~C~~~~~--------~-----------~~~---------------~---------~~~~g~~~~l~c~~~~-----  101 (145)
                      +|.|+|.+.+.        .           +..               .         ....|+.++|.|....     
T Consensus        91 sG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~v~~G~~v~L~C~~~~~~~~~  170 (280)
T 3fku_X           91 TAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQTATLTCTGNSNNVGN  170 (280)
T ss_dssp             CEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSEEEECTTCCEEEEEECCCCCCCT
T ss_pred             CEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCcEEEecCCCEEEEEEecCCCCCC
Confidence            99999999764        0           011               0         1235899999997110     


Q ss_pred             ------c-------------------------------CCcEEEEcccCCCCCeeeEEEEecCC
Q psy534          102 ------N-------------------------------DGTELRISNIRSQDIGDYTCLATHVL  128 (145)
Q Consensus       102 ------~-------------------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~  128 (145)
                            .                               ....|.|.+++.+|+|.|+|.+.|..
T Consensus       171 ~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          171 QGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             TCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             ceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence                  0                               00139999999999999999999875

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.36  E-value=1.2e-11  Score=85.94  Aligned_cols=121  Identities=15%  Similarity=0.099  Sum_probs=81.7

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCCC------------------cccccccceEEEecCCCCCCeeeEEEcccCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYPT------------------HEAEEYKGRISRVDKESPFGMASLNLTKIRE   67 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~~------------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~   67 (145)
                      +..+..+.+-|-+.+.+  .+.+.||+....                  .....+++|+.+..+ ...++.+|.|.+++.
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~v~~   90 (221)
T 3m8o_H           12 VQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRD-DSKNTAFLQMNSLKS   90 (221)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEE-GGGTEEEEEECSCCG
T ss_pred             EcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEec-CCCCEEEEEECCCCH
Confidence            45677788888887643  577888864311                  112346688877532 123467899999999


Q ss_pred             CCCEEEEEEEEEec------------C------CC-------CCCCCCcEEEEEEeEE------------e---------
Q psy534           68 SDQGWYECKVVFLN------------R------SP-------NSHKNGTWFHLDVHGV------------F---------  101 (145)
Q Consensus        68 ~D~G~Y~C~~~~~~------------~------~~-------~~~~~g~~~~l~c~~~------------~---------  101 (145)
                      +|+|.|+|.+.+..            +      .|       .....|..+.|.|...            .         
T Consensus        91 ~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~~~  170 (221)
T 3m8o_H           91 DDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTAR  170 (221)
T ss_dssp             GGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSCCCTTEEEEEEEEEEEBSSCSEEEEESCCSTTCEEE
T ss_pred             HHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCcccccCCCEEEEEEEEeeECCCCEEEEEEECCEECceE
Confidence            99999999996431            0      01       0013688999999710            0         


Q ss_pred             -------c-CC-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          102 -------N-DG-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       102 -------~-~~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                             . ++     ..|.|.....+|.|.|+|.|.|..+
T Consensus       171 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~  211 (221)
T 3m8o_H          171 NFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTN  211 (221)
T ss_dssp             ECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTS
T ss_pred             EcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCC
Confidence                   0 11     1377888888899999999999887

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.36  E-value=4.9e-12  Score=87.79  Aligned_cols=67  Identities=12%  Similarity=0.045  Sum_probs=48.2

Q ss_pred             hhhccceeeEEeecCCCc-cEEEEecCCCCc----------ccccccceEE----------EecCCCCCCeeeEEEcccC
Q psy534            8 KSIFQMLSVGDFADDEDI-PVYIWYDSYPTH----------EAEEYKGRIS----------RVDKESPFGMASLNLTKIR   66 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~-p~~~w~k~~~~~----------~~~~~~~R~~----------~~~~~~~~~~~sL~I~~v~   66 (145)
                      ...+.++.+.|-+.+.|. +.+.|++++...          ....+.+|+.          +      ..+++|.|.+++
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~------~~~~~L~i~~v~   85 (231)
T 2pet_A           12 VMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL------DSQGRLVLAEAQ   85 (231)
T ss_dssp             EETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEE------CTTCCEEESSCC
T ss_pred             EEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCcccccccccccccccccc------CCCceEEEcccC
Confidence            345677888898888884 899999765321          1122456665          4      224669999999


Q ss_pred             CCCCEEEEEEEEEe
Q psy534           67 ESDQGWYECKVVFL   80 (145)
Q Consensus        67 ~~D~G~Y~C~~~~~   80 (145)
                      .+|+|.|.|.+.+.
T Consensus        86 ~~D~G~Y~C~~~~~   99 (231)
T 2pet_A           86 VGDERDYVCVVRAG   99 (231)
T ss_dssp             GGGCEEEEEEEECG
T ss_pred             cccCceEEEEEEec
Confidence            99999999998543

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.35  E-value=7.6e-12  Score=89.79  Aligned_cols=112  Identities=11%  Similarity=0.151  Sum_probs=75.7

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec------
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN------   81 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~------   81 (145)
                      ...+.++.+.|...+ +.+.+.|||++..........+..     ....+.+|.|.+++.+|+|.|+|.+.+..      
T Consensus        18 V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~-----~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s   91 (257)
T 1b6u_A           18 VKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHH-----DGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLS   91 (257)
T ss_dssp             EESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCC-----TTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCC
T ss_pred             ecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeecc-----CCCceEEEEeecCCcccCEEEEEeEeccCCCcccc
Confidence            446778889999875 467899999985421111000000     11347889999999999999999986321      


Q ss_pred             ---------C-----------CCC-CCCCCcEEEEEEeE--------Ee---------------c---CCcEEEEcccCC
Q psy534           82 ---------R-----------SPN-SHKNGTWFHLDVHG--------VF---------------N---DGTELRISNIRS  114 (145)
Q Consensus        82 ---------~-----------~~~-~~~~g~~~~l~c~~--------~~---------------~---~~~~L~i~~v~~  114 (145)
                               +           .+. ....|+.++|.|..        ..               .   ....|.|.+++ 
T Consensus        92 ~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~-  170 (257)
T 1b6u_A           92 APSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT-  170 (257)
T ss_dssp             CCCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEECSSCCSEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC-
T ss_pred             ccCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEeCCCCCcEEEEEECCcccCcccccccccCCceeEEEEecccc-
Confidence                     0           011 13469999999981        00               0   13479999998 


Q ss_pred             CCCeeeEEEEecC
Q psy534          115 QDIGDYTCLATHV  127 (145)
Q Consensus       115 ~d~G~Y~C~a~n~  127 (145)
                       |+|.|+|.|.+.
T Consensus       171 -D~G~Y~C~a~~~  182 (257)
T 1b6u_A          171 -HGGTYRCFGSFR  182 (257)
T ss_dssp             -SCEEEEEEEECS
T ss_pred             -cCEEEEEEEEcC
Confidence             999999999975

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.35  E-value=6e-12  Score=88.06  Aligned_cols=121  Identities=15%  Similarity=0.147  Sum_probs=81.5

Q ss_pred             HhhhccceeeEEeecCCCc----cEEEEecCC---CCc------------ccccccceEEEecCCCCCCeeeEEEcccCC
Q psy534            7 VKSIFQMLSVGDFADDEDI----PVYIWYDSY---PTH------------EAEEYKGRISRVDKESPFGMASLNLTKIRE   67 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~----p~~~w~k~~---~~~------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~   67 (145)
                      .+..+..+.+-|.+.+.|.    +.+.||++.   ...            ....+.+|+.+..+ ...++.+|.|.+++.
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~   89 (228)
T 3bae_H           11 LLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKD-TSRDMVFMKITSVDT   89 (228)
T ss_dssp             EECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEE-TTTTEEEEEECSCCG
T ss_pred             eecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEc-CCCCeEEEEEcCCCc
Confidence            3566788889999988775    889998753   110            11235678887532 123468999999999


Q ss_pred             CCCEEEEEEEEEec-------------C------C------CC--------CCCCCcEEEEEEeEE-----------ecC
Q psy534           68 SDQGWYECKVVFLN-------------R------S------PN--------SHKNGTWFHLDVHGV-----------FND  103 (145)
Q Consensus        68 ~D~G~Y~C~~~~~~-------------~------~------~~--------~~~~g~~~~l~c~~~-----------~~~  103 (145)
                      +|+|.|+|.+.+..             .      .      |.        ....|..+.|.|...           ..+
T Consensus        90 ~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W~~~  169 (228)
T 3bae_H           90 ADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG  169 (228)
T ss_dssp             GGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             ccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEEeeC
Confidence            99999999996531             0      0      10        113588999999821           001


Q ss_pred             ---------------C-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 ---------------G-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ---------------~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                                     +     ..|.|..+..++ |.|+|.|.|..+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~  214 (228)
T 3bae_H          170 SLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPAS  214 (228)
T ss_dssp             TCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGG
T ss_pred             CcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCC
Confidence                           1     136777777655 999999999987

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.35  E-value=1.2e-12  Score=94.85  Aligned_cols=113  Identities=14%  Similarity=0.065  Sum_probs=75.2

Q ss_pred             hhccceeeEEeecCC-CccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-----
Q psy534            9 SIFQMLSVGDFADDE-DIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-----   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~-p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-----   82 (145)
                      ..+.++.+.|-+.+. |.+.+.|++++.. +..  ..+..+.     .+..+|.|.+++.+|+|.|+|.+.+...     
T Consensus        19 ~~G~~v~l~C~~~~~~p~~~v~W~~~~~~-~~~--~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~   90 (317)
T 2y25_A           19 TGECNVLLKCKVANIKKETHIVWYKDERE-ISV--DEKHDFK-----DGICTLLITEFSKKDAGIYEVILKDDRGKDKSR   90 (317)
T ss_dssp             ETTTEEEEEEEEESCCTTCEEEEEETTEE-ECC--SCC----------CCEEEEETTCCSTTCSCEEEEEESSSCEEEEE
T ss_pred             CCCCeEEEEEEEcCCCCCCEEEEEECCeE-cCC--CCcEEEE-----CCeEEEEEccCCcccCeEEEEEEECCCCcEEEE
Confidence            356678888988877 8899999998753 221  1233321     3468999999999999999999965321     


Q ss_pred             -------CC--------CCCCCCcEEEEEEeE-------------------Ee---------------cCC--cEEEEcc
Q psy534           83 -------SP--------NSHKNGTWFHLDVHG-------------------VF---------------NDG--TELRISN  111 (145)
Q Consensus        83 -------~~--------~~~~~g~~~~l~c~~-------------------~~---------------~~~--~~L~i~~  111 (145)
                             .+        .....|..+.|.|..                   +.               ..+  ..|.|.+
T Consensus        91 ~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~  170 (317)
T 2y25_A           91 LKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINE  170 (317)
T ss_dssp             ECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEES
T ss_pred             EEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECc
Confidence                   00        001234555555540                   00               011  2399999


Q ss_pred             cCCCCCeeeEEEEecCCC
Q psy534          112 IRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       112 v~~~d~G~Y~C~a~n~~g  129 (145)
                      ++.+|+|.|+|.|.|..|
T Consensus       171 ~~~~d~G~Y~C~a~n~~g  188 (317)
T 2y25_A          171 PTPNDKGKYVMELFDGKT  188 (317)
T ss_dssp             CCGGGCEEEEEEEECSSC
T ss_pred             CCcccCeeEEEEEEeCCc
Confidence            999999999999999988

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.35  E-value=5.4e-12  Score=91.08  Aligned_cols=128  Identities=16%  Similarity=0.199  Sum_probs=85.9

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC--C-c-------------ccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP--T-H-------------EAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~--~-~-------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      ...+..+.+.|.+.|.|  .+.+.||++..  . .             ....+.+|+.+..+ ......+|.|.+++.+|
T Consensus        38 v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~v~~~D  116 (282)
T 1qok_A           38 VRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTD-TSSNTAYLQLSSLTSED  116 (282)
T ss_dssp             EETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEE-TTTTEEEEEECSCCGGG
T ss_pred             EeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEe-cCCCeEEEEECcCChhh
Confidence            34567788889988775  67899998642  1 0             11234577776432 12346899999999999


Q ss_pred             CEEEEEEEEEec---------------C--CC-------------C------C----CCCCcEEEEEEeEE--------e
Q psy534           70 QGWYECKVVFLN---------------R--SP-------------N------S----HKNGTWFHLDVHGV--------F  101 (145)
Q Consensus        70 ~G~Y~C~~~~~~---------------~--~~-------------~------~----~~~g~~~~l~c~~~--------~  101 (145)
                      +|.|+|.+.+..               +  .+             .      +    ...|+.++|.|...        +
T Consensus       117 sG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~v~W~  196 (282)
T 1qok_A          117 TAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSVSYMHWF  196 (282)
T ss_dssp             CEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCCSCCEEE
T ss_pred             CEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCCceEEEE
Confidence            999999996531               0  11             0      0    23488999999820        0


Q ss_pred             c-------------------------------CCcEEEEcccCCCCCeeeEEEEecCC------CCcEEEEe
Q psy534          102 N-------------------------------DGTELRISNIRSQDIGDYTCLATHVL------YPDLLVVL  136 (145)
Q Consensus       102 ~-------------------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~------g~~~~v~~  136 (145)
                      .                               ...+|.|.+++.+|+|.|+|.|.|..      |..+.|..
T Consensus       197 k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  268 (282)
T 1qok_A          197 QQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELKR  268 (282)
T ss_dssp             EECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             EECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEec
Confidence            0                               01259999999999999999999843      25666653

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.34  E-value=6e-12  Score=87.89  Aligned_cols=120  Identities=17%  Similarity=0.164  Sum_probs=82.3

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC-Cc---------------ccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP-TH---------------EAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~-~~---------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|.+.|.+  .+.+.||++.. ..               ....+.+|+.+..+ ...++.+|.|.+++.+|
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~v~~~D   90 (225)
T 1op3_H           12 VKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRD-DLEDFVYLQMHKMRVED   90 (225)
T ss_dssp             EETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEE-TTTTEEEEEECSCCGGG
T ss_pred             ecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEec-CCCCEEEEEECCCChhh
Confidence            45677888899988776  67899988641 10               01235678876532 23457899999999999


Q ss_pred             CEEEEEEEEEec------------C-------C-----CC--------CCCCCcEEEEEEeEE-----------e-----
Q psy534           70 QGWYECKVVFLN------------R-------S-----PN--------SHKNGTWFHLDVHGV-----------F-----  101 (145)
Q Consensus        70 ~G~Y~C~~~~~~------------~-------~-----~~--------~~~~g~~~~l~c~~~-----------~-----  101 (145)
                      +|.|+|.+.+..            .       .     |.        ....|..+.|.|...           .     
T Consensus        91 ~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~  170 (225)
T 1op3_H           91 TAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALT  170 (225)
T ss_dssp             CEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCTTSCC
T ss_pred             CEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEecCCCc
Confidence            999999996531            0       0     10        123588999999810           0     


Q ss_pred             -----------cCC-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          102 -----------NDG-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       102 -----------~~~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                                 .++     ..|.|..+..+| |.|+|.|.|..+
T Consensus       171 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~  213 (225)
T 1op3_H          171 SGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  213 (225)
T ss_dssp             TTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGG
T ss_pred             CCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCC
Confidence                       011     137888888888 999999999765

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.33  E-value=5.2e-12  Score=93.01  Aligned_cols=113  Identities=17%  Similarity=0.143  Sum_probs=79.5

Q ss_pred             hhccceeeEEeecCCCc-----------cEEEEecCCCCcc-cc-----cccceEEEecCCCCCCeeeEEEcccCCCCCE
Q psy534            9 SIFQMLSVGDFADDEDI-----------PVYIWYDSYPTHE-AE-----EYKGRISRVDKESPFGMASLNLTKIRESDQG   71 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~-----------p~~~w~k~~~~~~-~~-----~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G   71 (145)
                      ..+.++.+.|-+.|.|.           +.+.|++++.... ..     ....|+..       .+.+|.|.+++.+|+|
T Consensus        20 ~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~-------~~~~L~i~~~~~~D~G   92 (349)
T 4dep_C           20 FEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISK-------EKDVLWFRPTLLNDTG   92 (349)
T ss_dssp             ETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEE-------ETTEEEESSCCGGGCE
T ss_pred             ecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEee-------cCCEEEEccCChhhCE
Confidence            45678888898887665           9999999874210 00     12233332       2668999999999999


Q ss_pred             EEEEEEEEec----------C--CCC------------CCCCCcEEEEEEeE--------------Ee------------
Q psy534           72 WYECKVVFLN----------R--SPN------------SHKNGTWFHLDVHG--------------VF------------  101 (145)
Q Consensus        72 ~Y~C~~~~~~----------~--~~~------------~~~~g~~~~l~c~~--------------~~------------  101 (145)
                      .|.|.+.+..          +  .+.            ....|+.+.|.|..              +.            
T Consensus        93 ~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~  172 (349)
T 4dep_C           93 NYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNV  172 (349)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSE
T ss_pred             EEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccce
Confidence            9999996532          1  110            12358899999941              11            


Q ss_pred             -cCCcEEEEcccCCCCCeeeEEEEecCC
Q psy534          102 -NDGTELRISNIRSQDIGDYTCLATHVL  128 (145)
Q Consensus       102 -~~~~~L~i~~v~~~d~G~Y~C~a~n~~  128 (145)
                       ..+..|.|.+++.+|+|.|+|.|.|..
T Consensus       173 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  200 (349)
T 4dep_C          173 IPEGMNLSFLIALISNNGNYTCVVTYPE  200 (349)
T ss_dssp             EEETTEEEEESCCGGGCEEEEEEEEEEE
T ss_pred             eecCCEEEEeeeeecCCcEEEEEEEEee
Confidence             123479999999999999999999987

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.33  E-value=3e-13  Score=98.98  Aligned_cols=113  Identities=14%  Similarity=0.219  Sum_probs=33.5

Q ss_pred             HhhhccceeeEEeecCC-CccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec----
Q psy534            7 VKSIFQMLSVGDFADDE-DIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN----   81 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~-p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~----   81 (145)
                      ....+.++.+.|-+.|. |.+.+.|++++... .  ...|+.+       .+++|.|.+++.+|+|.|+|.+.+..    
T Consensus        19 ~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~-~--~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~   88 (334)
T 1ry7_B           19 VFGSGDAVELSCPPPGGGPMGPTVWVKDGTGL-V--PSERVLV-------GPQRLQVLNASHEDSGAYSCRQRLTQRVLC   88 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEecCCcEEEEeeCCCCCCCcceEEEECCeeC-C--CcccEEe-------ccceEEEeecccccCEEEEEEEEeCCeEEE
Confidence            34566778888988876 68899999997542 1  1234332       36799999999999999999996531    


Q ss_pred             -----C--C----------------------CC------------CCCCCcEEEEEEeE---------Ee----------
Q psy534           82 -----R--S----------------------PN------------SHKNGTWFHLDVHG---------VF----------  101 (145)
Q Consensus        82 -----~--~----------------------~~------------~~~~g~~~~l~c~~---------~~----------  101 (145)
                           +  .                      |.            ....|+.+.|.|..         +.          
T Consensus        89 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~  168 (334)
T 1ry7_B           89 HFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH  168 (334)
T ss_dssp             ------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTS
T ss_pred             EEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccc
Confidence                 0  0                      00            01248889999981         00          


Q ss_pred             --------cCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          102 --------NDGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       102 --------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                              .....|.|.+++.+|+|.|+|.|.|..|
T Consensus       169 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  204 (334)
T 1ry7_B          169 RIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFG  204 (334)
T ss_dssp             STTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTE
T ss_pred             cccceecccceEEEEECCCCcccCEEEEEEEEeCCC
Confidence                    1123799999999999999999999987

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.33  E-value=2.2e-12  Score=91.47  Aligned_cols=119  Identities=18%  Similarity=0.162  Sum_probs=80.8

Q ss_pred             hhhccceeeEEeecCCC-----ccEEEEecCCC-Cc----------ccccccceEEEecCCCCCCeeeEEEcccCCCCCE
Q psy534            8 KSIFQMLSVGDFADDED-----IPVYIWYDSYP-TH----------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQG   71 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p-----~p~~~w~k~~~-~~----------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G   71 (145)
                      +..+.++.+.|-+.|.|     .+.+.|||++. ..          ....+.+|+.+..   ..++.+|.|.+++.+|+|
T Consensus        46 v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G  122 (252)
T 3bkj_L           46 VNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSG---SGTDFTLRISRVEAEDLG  122 (252)
T ss_dssp             ECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCE
T ss_pred             EeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEc---cCCEEEEEECCCCcccCE
Confidence            45667888899998887     68899998642 10          1123456666532   134679999999999999


Q ss_pred             EEEEEEEEec-----------C-----CCCC--------CCCCcEEEEEEeEE-----------ec--------------
Q psy534           72 WYECKVVFLN-----------R-----SPNS--------HKNGTWFHLDVHGV-----------FN--------------  102 (145)
Q Consensus        72 ~Y~C~~~~~~-----------~-----~~~~--------~~~g~~~~l~c~~~-----------~~--------------  102 (145)
                      .|+|.+.+..           +     +|..        ...|..+.|.|...           ..              
T Consensus       123 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~  202 (252)
T 3bkj_L          123 VYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWT  202 (252)
T ss_dssp             EEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEEC
T ss_pred             EEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecC
Confidence            9999985431           1     1110        01377899999810           00              


Q ss_pred             -----CC-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 -----DG-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 -----~~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                           ++     ..|.|..+..+|+|.|+|.|.|...
T Consensus       203 ~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  239 (252)
T 3bkj_L          203 DQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  239 (252)
T ss_dssp             CCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTC
T ss_pred             cccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCC
Confidence                 01     1378888888899999999999864

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.33  E-value=6.3e-12  Score=102.11  Aligned_cols=111  Identities=19%  Similarity=0.271  Sum_probs=82.1

Q ss_pred             hccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccC-CCCCEEEEEEEEEecC------
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIR-ESDQGWYECKVVFLNR------   82 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~-~~D~G~Y~C~~~~~~~------   82 (145)
                      .+.++.+.|-+.|.|.+.+.|++++... .  ...+...      ..+++|.|.++. .+|+|.|+|.+.+...      
T Consensus       540 ~G~~v~l~C~~~g~p~~~i~W~k~~~~l-~--~~~~~~~------~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~  610 (816)
T 3dmk_A          540 AGETLIVTCPVAGYPIDSIVWERDNRAL-P--INRKQKV------FPNGTLIIENVERNSDQATYTCVAKNQEGYSARGS  610 (816)
T ss_dssp             TTCCEEEECCEECSSEEEEEEEETTEES-C--CSTTEEE------CTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEE
T ss_pred             cCCeEEEEEEecCCCCCEEEEEECCeEc-c--cCCceEE------ecCCeEEEEecCccccCEEEEEEEEECCCceeeee
Confidence            4567788898889999999999987532 1  2233333      237789999998 6999999999976421      


Q ss_pred             -------CCC---------CCCCCcEEEEEEeE----------Ee------------------cCCcEEEEcccCCCCCe
Q psy534           83 -------SPN---------SHKNGTWFHLDVHG----------VF------------------NDGTELRISNIRSQDIG  118 (145)
Q Consensus        83 -------~~~---------~~~~g~~~~l~c~~----------~~------------------~~~~~L~i~~v~~~d~G  118 (145)
                             +|.         ....|+.+.|.|..          +.                  .....|.|.+++.+|+|
T Consensus       611 ~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  690 (816)
T 3dmk_A          611 LEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAG  690 (816)
T ss_dssp             EEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCE
T ss_pred             EEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCE
Confidence                   111         12359999999981          00                  11246999999999999


Q ss_pred             eeEEEEecCCC
Q psy534          119 DYTCLATHVLY  129 (145)
Q Consensus       119 ~Y~C~a~n~~g  129 (145)
                      .|+|.|.|..|
T Consensus       691 ~Y~C~a~N~~g  701 (816)
T 3dmk_A          691 NFTCHARNLAG  701 (816)
T ss_dssp             EEEEEEECSSC
T ss_pred             EEEEEEEeCCc
Confidence            99999999998

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.32  E-value=1.7e-12  Score=95.60  Aligned_cols=111  Identities=17%  Similarity=0.214  Sum_probs=61.6

Q ss_pred             hhccceeeEEee-----cCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec--
Q psy534            9 SIFQMLSVGDFA-----DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN--   81 (145)
Q Consensus         9 ~~~~~~~~~~w~-----~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~--   81 (145)
                      ..+.++.+.|-.     .|.|.|.+.|+|++.. +...  .++..       ....|.|.+++.+|+|.|+|.+.+..  
T Consensus       133 ~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~-l~~~--~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~~g  202 (349)
T 4dep_C          133 IEYGIQRITCPNVDGYFPSSVKPTITWYMGCYK-IQNF--NNVIP-------EGMNLSFLIALISNNGNYTCVVTYPENG  202 (349)
T ss_dssp             TTCSEEEEECCSCTTSSCTTSCCEEEEEETTEE-CCSC--SSEEE-------ETTEEEEESCCGGGCEEEEEEEEEEETT
T ss_pred             ecCccEEEEcCCCcccccCCCCceEEEeeCCEE-CCCc--cceee-------cCCEEEEeeeeecCCcEEEEEEEEeeCC
Confidence            345667788864     6789999999999753 2211  22221       14679999999999999999996531  


Q ss_pred             ------------C--------CCC----------CCCCCcEEEEEEeEE-------------ecC---------------
Q psy534           82 ------------R--------SPN----------SHKNGTWFHLDVHGV-------------FND---------------  103 (145)
Q Consensus        82 ------------~--------~~~----------~~~~g~~~~l~c~~~-------------~~~---------------  103 (145)
                                  +        +|.          ....|+.+.|.|...             ..+               
T Consensus       203 ~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~  282 (349)
T 4dep_C          203 RTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINE  282 (349)
T ss_dssp             EEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCE
T ss_pred             EEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCcccccc
Confidence                        0        110          123477888999721             000               


Q ss_pred             -------C-----cEEEEcccCCCCC-eeeEEEEecCCC
Q psy534          104 -------G-----TELRISNIRSQDI-GDYTCLATHVLY  129 (145)
Q Consensus       104 -------~-----~~L~i~~v~~~d~-G~Y~C~a~n~~g  129 (145)
                             +     ..|.|.+++.+|+ |.|+|.|.|..|
T Consensus       283 ~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G  321 (349)
T 4dep_C          283 SISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKG  321 (349)
T ss_dssp             EEECCTTCCEEEEECC-------------CEEEEECSSC
T ss_pred             ceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCC
Confidence                   0     1288999999999 999999999999

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.32  E-value=3.8e-12  Score=88.84  Aligned_cols=119  Identities=17%  Similarity=0.168  Sum_probs=79.1

Q ss_pred             hhhccceeeEEeecCCC-cc-EEEEecCCC--Cc---------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEE
Q psy534            8 KSIFQMLSVGDFADDED-IP-VYIWYDSYP--TH---------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE   74 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p-~p-~~~w~k~~~--~~---------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   74 (145)
                      ...+..+.+-|-+.|.+ .+ .+.||++..  ..         ....+.+|+....   ...+.+|.|.+++.+|+|.|+
T Consensus        31 v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y~  107 (234)
T 2j6e_L           31 GTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSK---SGTSASLAISGLRSEDEADYY  107 (234)
T ss_dssp             BCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEE---ETTEEEEEEESCCSTTCSEEE
T ss_pred             eeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEe---cCCeEEEEECCCCHHHCEEEE
Confidence            45677888899988754 34 699998641  10         1122345665432   134679999999999999999


Q ss_pred             EEEEEec-------------C------CCCC--------CCCCcEEEEEEeE-----------Ee---------------
Q psy534           75 CKVVFLN-------------R------SPNS--------HKNGTWFHLDVHG-----------VF---------------  101 (145)
Q Consensus        75 C~~~~~~-------------~------~~~~--------~~~g~~~~l~c~~-----------~~---------------  101 (145)
                      |.+.+..             +      +|..        ...|..+.|.|..           +.               
T Consensus       108 C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~  187 (234)
T 2j6e_L          108 CATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKP  187 (234)
T ss_dssp             EEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCC
T ss_pred             EEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCccccCc
Confidence            9997531             0      1110        0126789999971           00               


Q ss_pred             ---cC-----CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          102 ---ND-----GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       102 ---~~-----~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                         .+     ...|.|..+..+|+|.|+|.|+|..+
T Consensus       188 ~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  223 (234)
T 2j6e_L          188 SKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGS  223 (234)
T ss_dssp             CCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTB
T ss_pred             eECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCC
Confidence               00     12478888889999999999999875

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.32  E-value=3.3e-12  Score=90.87  Aligned_cols=71  Identities=13%  Similarity=0.045  Sum_probs=42.6

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCC---CCc-------------ccccccceEEEecCCCCCCeeeEEEcccCCCCCE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSY---PTH-------------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQG   71 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~---~~~-------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G   71 (145)
                      +..+.++.+-|.+.+.+.+.+.||+..   ...             ....+.+|..... +......+|.|.+++.+|+|
T Consensus        14 v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~L~I~~v~~~DsG   92 (259)
T 3omz_A           14 RQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTY-GSTRKNLRMILRNLIENDSG   92 (259)
T ss_dssp             EETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEE-CC--CCCEEEESSCCGGGCE
T ss_pred             ecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEee-cCCCCeEEEEECCCCcccCE
Confidence            456778888898888888899999832   110             1112222332221 12234678999999999999


Q ss_pred             EEEEEEEE
Q psy534           72 WYECKVVF   79 (145)
Q Consensus        72 ~Y~C~~~~   79 (145)
                      .|+|.+.+
T Consensus        93 ~Y~C~~~~  100 (259)
T 3omz_A           93 VYYCATWD  100 (259)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEee
Confidence            99999964

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.31  E-value=3e-11  Score=86.49  Aligned_cols=70  Identities=11%  Similarity=0.124  Sum_probs=49.8

Q ss_pred             HhhhccceeeEEeecCCC------ccEEEEecCC--C-Cc--c------cccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            7 VKSIFQMLSVGDFADDED------IPVYIWYDSY--P-TH--E------AEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p------~p~~~w~k~~--~-~~--~------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      ....+..+.+.|.+.+.|      .+.+.||++.  . ..  +      ...+.+|+.+..   ....++|.|.+++.+|
T Consensus        16 ~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~---~~~~~~L~I~~v~~~D   92 (264)
T 2gjj_A           16 PVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSG---SGTDFTLTIGSVKAED   92 (264)
T ss_dssp             EEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE---ETTEEEEEESSCCGGG
T ss_pred             EecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEec---CCCEEEEEECCCCHHH
Confidence            345677888999998887      6889999853  1 11  0      012356766532   1346799999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|+|.+.+
T Consensus        93 sG~Y~C~~~~  102 (264)
T 2gjj_A           93 LAVYYCQQYS  102 (264)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEEEEEec
Confidence            9999999853

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.31  E-value=1.4e-11  Score=86.75  Aligned_cols=70  Identities=16%  Similarity=0.236  Sum_probs=52.1

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecC----------------CCCcccccccceEEEecCCCCCCeeeEEEcccCCCCC
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDS----------------YPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQ   70 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~----------------~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   70 (145)
                      .+..+..+.+-|.+.+.+.+.+.||+.                ........+.+|+.+..+  ..++.+|.|.+++.+|+
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~L~I~~v~~~D~   89 (246)
T 4dzb_B           12 ISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA--SLTLSTLTVTSAHPEDS   89 (246)
T ss_dssp             EEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEE--ETTEEEEEECSCCGGGC
T ss_pred             EEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEec--CCCEEEEEECCCCHHHC
Confidence            345677888999999888899999982                221223345678876532  13477999999999999


Q ss_pred             EEEEEEEE
Q psy534           71 GWYECKVV   78 (145)
Q Consensus        71 G~Y~C~~~   78 (145)
                      |.|+|.+.
T Consensus        90 G~Y~C~~~   97 (246)
T 4dzb_B           90 SFYICSAR   97 (246)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEe
Confidence            99999995

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.31  E-value=3e-13  Score=94.54  Aligned_cols=120  Identities=16%  Similarity=0.097  Sum_probs=67.9

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC-Ccc----------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP-THE----------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~-~~~----------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      ....+.++.+-|.+.+.|.+.+.||++.. ...          ...+.+|+....   ..++.+|.|.+++.+|+|.|.|
T Consensus        34 ~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y~C  110 (233)
T 3bqu_C           34 SMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSG---YGTDFVFTIENMLSEDVADYYC  110 (233)
T ss_dssp             -------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCE---EEEEEEEC-----CCCCSEEEE
T ss_pred             EEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeec---cCCEEEEEECCCCHHHCEEEEE
Confidence            34567788888998888777899998642 100          112334443311   1235589999999999999999


Q ss_pred             EEEEecC----------------CCCC--------CCCCcEEEEEEeEE-----------ec------------------
Q psy534           76 KVVFLNR----------------SPNS--------HKNGTWFHLDVHGV-----------FN------------------  102 (145)
Q Consensus        76 ~~~~~~~----------------~~~~--------~~~g~~~~l~c~~~-----------~~------------------  102 (145)
                      .+.+...                +|..        ...|..+.|.|...           ..                  
T Consensus       111 ~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~  190 (233)
T 3bqu_C          111 LQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDS  190 (233)
T ss_dssp             EECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCT
T ss_pred             EEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCccC
Confidence            9954210                1100        01278999999810           00                  


Q ss_pred             -CC-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 -DG-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 -~~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                       ++     ..|.|..+..+|+|.|+|.|.|...
T Consensus       191 ~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          191 KDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             TTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             CCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence             00     1467888888899999999999754

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.30  E-value=1.9e-12  Score=89.08  Aligned_cols=117  Identities=18%  Similarity=0.184  Sum_probs=78.3

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCC---CCc--------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSY---PTH--------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~---~~~--------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      +..+.++.+-|-+.  |.+.+.||++.   ...        ....+.+|+.+..   ...+++|.|.+++.+|+|.|+|.
T Consensus        12 v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~   86 (211)
T 3tv3_L           12 GSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK---SGNTASLTVSGLQTDDEAVYYCG   86 (211)
T ss_dssp             ECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE---ETTEEEEEEESCCGGGCEEEEEE
T ss_pred             EcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc---cCCEEEEEECCCChhHCEEEEEE
Confidence            34567788888887  78889998842   110        0111345665432   24578999999999999999999


Q ss_pred             EEEec------------C------CCCC--------CCCCcEEEEEEeE-----------EecC----------------
Q psy534           77 VVFLN------------R------SPNS--------HKNGTWFHLDVHG-----------VFND----------------  103 (145)
Q Consensus        77 ~~~~~------------~------~~~~--------~~~g~~~~l~c~~-----------~~~~----------------  103 (145)
                      +.+..            +      +|..        ...|..+.|.|..           +..+                
T Consensus        87 ~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~  166 (211)
T 3tv3_L           87 SLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQ  166 (211)
T ss_dssp             EEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEC
T ss_pred             EecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceEC
Confidence            97621            0      1100        0138899999971           0001                


Q ss_pred             --C-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 --G-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 --~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                        +     ..|.|..+..+|+|.|+|.|.|..+
T Consensus       167 ~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~  199 (211)
T 3tv3_L          167 SNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGS  199 (211)
T ss_dssp             TTSSEEEEEEEEECHHHHHHSSCEEEEEEETTE
T ss_pred             CCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCC
Confidence              1     2477888888899999999999976

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.29  E-value=2.2e-11  Score=94.40  Aligned_cols=117  Identities=13%  Similarity=0.103  Sum_probs=77.0

Q ss_pred             ccceeeEEeecCCCcc--EEEEecCCCCcccccccceEEEecCCCC-CCeeeEEEcccCCCCCEEEEEEEEEecC-----
Q psy534           11 FQMLSVGDFADDEDIP--VYIWYDSYPTHEAEEYKGRISRVDKESP-FGMASLNLTKIRESDQGWYECKVVFLNR-----   82 (145)
Q Consensus        11 ~~~~~~~~w~~g~p~p--~~~w~k~~~~~~~~~~~~R~~~~~~~~~-~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-----   82 (145)
                      +.++.+.|.+.|.|.+  .+.|+|++... .............+.. .....|.|.+++.+|+|.|+|.+.+...     
T Consensus       129 g~~v~l~C~~~g~~p~~~~v~W~k~g~~l-~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  207 (523)
T 2rcj_C          129 ANKATLVCLISDFYPGAVTVAWKADGSPV-KAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT  207 (523)
T ss_pred             CCceEEEEEeccccCCceEEEEecCCCCC-CCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccc
Confidence            5578889999987654  89999998542 2111100000000000 0135799999999999999999976321     


Q ss_pred             -----------CC--------CCCCCCcEEEEEEeE-----------Eec----------------CC-----cEEEEcc
Q psy534           83 -----------SP--------NSHKNGTWFHLDVHG-----------VFN----------------DG-----TELRISN  111 (145)
Q Consensus        83 -----------~~--------~~~~~g~~~~l~c~~-----------~~~----------------~~-----~~L~i~~  111 (145)
                                 +|        .....|+.+.|.|..           +..                ++     ..|.|.+
T Consensus       208 ~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~  287 (523)
T 2rcj_C          208 VAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPS  287 (523)
T ss_pred             eeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEech
Confidence                       11        112458899999981           000                11     2689999


Q ss_pred             cCCCCCeeeEEEEecCCC
Q psy534          112 IRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       112 v~~~d~G~Y~C~a~n~~g  129 (145)
                      ++.+| |.|+|.|.|..|
T Consensus       288 ~~~~d-G~Y~C~a~n~~g  304 (523)
T 2rcj_C          288 SSLGT-QTYICNVNHKPS  304 (523)
T ss_pred             hhcCC-ceEEEEEEeCCC
Confidence            99999 999999999998

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.29  E-value=3.7e-12  Score=93.31  Aligned_cols=116  Identities=12%  Similarity=0.127  Sum_probs=79.0

Q ss_pred             HhhhccceeeEEeecCC-Ccc---EEEEecCCCCcccc-------cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDE-DIP---VYIWYDSYPTHEAE-------EYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~-p~p---~~~w~k~~~~~~~~-------~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      ....+.++.+.|.+.|. |.|   .+.||++++..+..       .+.+++.        ..++|.|.+++.+|+|.|+|
T Consensus       124 ~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~--------~~~~L~I~~~~~~D~G~Y~C  195 (323)
T 2wqr_A          124 DLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLT--------VTSTLPVGTRDWIEGETYQC  195 (323)
T ss_dssp             HHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEE--------EEEEEECCHHHHHTTCCEEE
T ss_pred             HhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEE--------EEEEEEECHHHccCCCCEEE
Confidence            34567888999998874 666   89999975332221       1112211        25689999999999999999


Q ss_pred             EEEEecC----------------CC--------CCCCCCcEEEEEEeE-----------Eec------------------
Q psy534           76 KVVFLNR----------------SP--------NSHKNGTWFHLDVHG-----------VFN------------------  102 (145)
Q Consensus        76 ~~~~~~~----------------~~--------~~~~~g~~~~l~c~~-----------~~~------------------  102 (145)
                      .+.+...                +|        .....|..+.|.|..           +..                  
T Consensus       196 ~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~  275 (323)
T 2wqr_A          196 RVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKT  275 (323)
T ss_dssp             EEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEEC
T ss_pred             EEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccC
Confidence            9965320                11        011238999999971           000                  


Q ss_pred             -CC-----cEEEEcccCCCCCeeeEEEEecCCCC
Q psy534          103 -DG-----TELRISNIRSQDIGDYTCLATHVLYP  130 (145)
Q Consensus       103 -~~-----~~L~i~~v~~~d~G~Y~C~a~n~~g~  130 (145)
                       ++     ..|.|..+..+|+|.|+|.|.|....
T Consensus       276 ~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          276 KGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             SSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             CCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence             11     24788888889999999999998764

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.28  E-value=1e-11  Score=91.76  Aligned_cols=121  Identities=16%  Similarity=0.185  Sum_probs=82.4

Q ss_pred             HhhhccceeeEEeecCC--CccEEEEecCC--CCc--------------ccccccceEEEecCCCCCCeeeEEEcccCCC
Q psy534            7 VKSIFQMLSVGDFADDE--DIPVYIWYDSY--PTH--------------EAEEYKGRISRVDKESPFGMASLNLTKIRES   68 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~--p~p~~~w~k~~--~~~--------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~   68 (145)
                      ....+..+.+.|-+.|.  +.+.+.|||+.  ...              ....+.+|+.+..+ ...+.++|.|.+++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~~   89 (344)
T 1za6_B           11 VVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTAD-TSASTAYVELSSLRSE   89 (344)
T ss_dssp             EECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEE-TTTTEEEEEECSCCGG
T ss_pred             EEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEe-cCCCEEEEEECCCCcc
Confidence            34567788899998876  46789999863  111              01235678876532 2234689999999999


Q ss_pred             CCEEEEEEEEEe----------cC------CC--------CCCCCCcEEEEEEeEE-----------ecC----------
Q psy534           69 DQGWYECKVVFL----------NR------SP--------NSHKNGTWFHLDVHGV-----------FND----------  103 (145)
Q Consensus        69 D~G~Y~C~~~~~----------~~------~~--------~~~~~g~~~~l~c~~~-----------~~~----------  103 (145)
                      |+|.|+|.+.+.          .+      +|        .....|+.+.|.|...           ..+          
T Consensus        90 D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~  169 (344)
T 1za6_B           90 DTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFP  169 (344)
T ss_dssp             GCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECC
T ss_pred             cCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECC
Confidence            999999998431          11      11        1124689999999820           001          


Q ss_pred             ------C-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 ------G-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ------~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                            +     ..|.|..+..+| |.|+|.|.|..+
T Consensus       170 ~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~  205 (344)
T 1za6_B          170 AVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  205 (344)
T ss_dssp             CEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGG
T ss_pred             CeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCC
Confidence                  1     157788887777 999999999887

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.28  E-value=1.2e-11  Score=85.44  Aligned_cols=119  Identities=18%  Similarity=0.157  Sum_probs=79.0

Q ss_pred             hhhccceeeEEee-cCCC-ccEEEEecCCC-Ccc----------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEE
Q psy534            8 KSIFQMLSVGDFA-DDED-IPVYIWYDSYP-THE----------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE   74 (145)
Q Consensus         8 ~~~~~~~~~~~w~-~g~p-~p~~~w~k~~~-~~~----------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   74 (145)
                      ...+.++.+.|-+ .+.+ .+.+.||+++. ...          ...+.+|+.+..   ..++.+|.|.+++.+|+|.|.
T Consensus        12 v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y~   88 (216)
T 2xzc_L           12 AAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSK---SGTSATLGITGLQTGDEADYY   88 (216)
T ss_dssp             ECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE---ETTEEEEEECSCCGGGCEEEE
T ss_pred             ecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEec---cCCEEEEEECCCCcccCEEEE
Confidence            4567788888984 4443 67899998542 100          122345666532   134679999999999999999


Q ss_pred             EEEEEec------------C-----CCCC---C-----CCCcEEEEEEeEE-----------e------c----------
Q psy534           75 CKVVFLN------------R-----SPNS---H-----KNGTWFHLDVHGV-----------F------N----------  102 (145)
Q Consensus        75 C~~~~~~------------~-----~~~~---~-----~~g~~~~l~c~~~-----------~------~----------  102 (145)
                      |.+.+..            +     +|..   .     ..|..+.|.|...           .      .          
T Consensus        89 C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~  168 (216)
T 2xzc_L           89 CGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQ  168 (216)
T ss_dssp             EEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCC
T ss_pred             EEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcc
Confidence            9997531            0     1110   0     1277999999810           0      0          


Q ss_pred             ---CC-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 ---DG-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ---~~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                         ++     ..|.|..+..+|+|.|+|.|.|...
T Consensus       169 ~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  203 (216)
T 2xzc_L          169 DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGL  203 (216)
T ss_dssp             CTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             cCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCC
Confidence               01     1578888889999999999999864

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.28  E-value=9.9e-12  Score=93.99  Aligned_cols=115  Identities=20%  Similarity=0.190  Sum_probs=76.1

Q ss_pred             ccceeeEEeecC-CCcc-EEEEecCCCCcccccccceEEEec-CCCC-CCeeeEEEcccCCCCCEEEEEEEEEecCC---
Q psy534           11 FQMLSVGDFADD-EDIP-VYIWYDSYPTHEAEEYKGRISRVD-KESP-FGMASLNLTKIRESDQGWYECKVVFLNRS---   83 (145)
Q Consensus        11 ~~~~~~~~w~~g-~p~p-~~~w~k~~~~~~~~~~~~R~~~~~-~~~~-~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~---   83 (145)
                      +.++.+.|.+.| .|.| .+.|++++.. +............ .+.. ...+.|.|.+++.+|+|.|.|.+.+....   
T Consensus       131 g~~~~l~C~~~g~~p~~~~v~W~k~g~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  209 (438)
T 1qgc_4          131 SGGASVVCFLNNFYPKDINVKWKIDGSE-RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPI  209 (438)
T ss_dssp             TTEEEEEEEEEEEBSSCEEEEEEETTEE-ECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCE
T ss_pred             CCceEEEEEEccccCCCcEEEEEECCEE-cCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCce
Confidence            457888999886 6777 8999998753 2211000111111 0000 01468999999999999999999764210   


Q ss_pred             --------C---------CCCCCCcEEEEEEeEE-----------ecC--------------------------------
Q psy534           84 --------P---------NSHKNGTWFHLDVHGV-----------FND--------------------------------  103 (145)
Q Consensus        84 --------~---------~~~~~g~~~~l~c~~~-----------~~~--------------------------------  103 (145)
                              +         .....|+.+.|.|...           ...                                
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  289 (438)
T 1qgc_4          210 VKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTIS  289 (438)
T ss_dssp             EEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEE
T ss_pred             ecccccccceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEE
Confidence                    0         1134589999999821           000                                


Q ss_pred             ------CcEEEEcccCCCCCeeeEEEEec
Q psy534          104 ------GTELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       104 ------~~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                            ...|.|.+++.+|+|.|+|.|.|
T Consensus       290 ~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  318 (438)
T 1qgc_4          290 RDNAKNTLYLQMSSLRSADTAMYYCVRRE  318 (438)
T ss_dssp             EETTTTEEEEEECSCCGGGCCEEEEEECC
T ss_pred             eecCCCeEEEEECCCChhhCEEEEEEEEc
Confidence                  12799999999999999999998

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.28  E-value=4.7e-11  Score=83.29  Aligned_cols=122  Identities=16%  Similarity=0.136  Sum_probs=81.1

Q ss_pred             HhhhccceeeEEeecCCC--ccEEEEecCCC---Cc-------------ccccccceEEEecCCCCCCeeeEEEcccCCC
Q psy534            7 VKSIFQMLSVGDFADDED--IPVYIWYDSYP---TH-------------EAEEYKGRISRVDKESPFGMASLNLTKIRES   68 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p--~p~~~w~k~~~---~~-------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~   68 (145)
                      .+..+..+.+-|.+.+.+  .+.+.||+...   ..             ....+.+|+.+..+ ...++.+|.|.+++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~v~~~   89 (223)
T 1dee_B           11 VVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRD-NSKNTLYLQMNSLRAE   89 (223)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEE-TTTTEEEEEECSCCGG
T ss_pred             EEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEec-CCCCEEEEEECCCCHH
Confidence            345677888889888765  47788987531   10             11236678887543 2234789999999999


Q ss_pred             CCEEEEEEEEEec----------------CC------CC--------CCCCCcEEEEEEeE-----------Eec-CC--
Q psy534           69 DQGWYECKVVFLN----------------RS------PN--------SHKNGTWFHLDVHG-----------VFN-DG--  104 (145)
Q Consensus        69 D~G~Y~C~~~~~~----------------~~------~~--------~~~~g~~~~l~c~~-----------~~~-~~--  104 (145)
                      |+|.|+|.+.+..                +.      |.        ....|..+.|.|..           +.. ++  
T Consensus        90 D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~  169 (223)
T 1dee_B           90 DTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSD  169 (223)
T ss_dssp             GCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSCB
T ss_pred             HCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCCc
Confidence            9999999996521                01      10        11358899999981           111 11  


Q ss_pred             -------------------cEEEEcccCC--CCCeeeEEEEecCCC
Q psy534          105 -------------------TELRISNIRS--QDIGDYTCLATHVLY  129 (145)
Q Consensus       105 -------------------~~L~i~~v~~--~d~G~Y~C~a~n~~g  129 (145)
                                         ..|.|.....  +|.|.|+|.|.|..+
T Consensus       170 l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~  215 (223)
T 1dee_B          170 ISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNG  215 (223)
T ss_dssp             CSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTC
T ss_pred             cceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCC
Confidence                               1255555554  678999999999987

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.28  E-value=1.7e-11  Score=89.14  Aligned_cols=122  Identities=15%  Similarity=0.146  Sum_probs=78.2

Q ss_pred             hhhccceeeEEeecCCCcc-----EEEEecCCCCcc----------cccccceEEEecC--CCCCCeeeEEEcccCCCCC
Q psy534            8 KSIFQMLSVGDFADDEDIP-----VYIWYDSYPTHE----------AEEYKGRISRVDK--ESPFGMASLNLTKIRESDQ   70 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p-----~~~w~k~~~~~~----------~~~~~~R~~~~~~--~~~~~~~sL~I~~v~~~D~   70 (145)
                      +..+..+.+-|-+.+.+.+     .+.|+|++....          ......|..+...  ....++++|.|.+++.+|+
T Consensus        12 ~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~   91 (313)
T 4fqp_A           12 GFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDE   91 (313)
T ss_dssp             CBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSCCGGGC
T ss_pred             EecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcCChhhC
Confidence            3457788888988876655     488998864211          0011234443321  1223578899999999999


Q ss_pred             EEEEEEEEEec-----------C--CC--------CCCCCCcEEEEEEeE----------Ee---------------cCC
Q psy534           71 GWYECKVVFLN-----------R--SP--------NSHKNGTWFHLDVHG----------VF---------------NDG  104 (145)
Q Consensus        71 G~Y~C~~~~~~-----------~--~~--------~~~~~g~~~~l~c~~----------~~---------------~~~  104 (145)
                      |.|+|++....           .  .|        .....+....+.|..          +.               ..+
T Consensus        92 G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~  171 (313)
T 4fqp_A           92 GNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSG  171 (313)
T ss_dssp             EEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECSSTT
T ss_pred             EEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeeeeccc
Confidence            99999884321           0  11        112346677888861          00               111


Q ss_pred             -----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 -----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 -----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                           ..|.|..+..+|.|.|+|.|.|..+
T Consensus       172 ~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~  201 (313)
T 4fqp_A          172 TVTVTSLWILVPSSQVDGKNVTCKVEHESF  201 (313)
T ss_dssp             CEEEEEEEEECCCGGGTTCEEEEEEECTTS
T ss_pred             ccccceeeeecccccccCeeEEEEEEccCc
Confidence                 2478888889999999999999876

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.27  E-value=1.5e-11  Score=91.61  Aligned_cols=114  Identities=16%  Similarity=0.179  Sum_probs=82.6

Q ss_pred             hhccceeeEEeecC-CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-----
Q psy534            9 SIFQMLSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-----   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-----   82 (145)
                      ..+.++.+.|-+.| .|.+.+.|+|++... ..... +...     ...+++|.|.+++.+|+|.|+|.+.+...     
T Consensus        19 ~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~-~~~~~-~~~~-----~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~   91 (395)
T 1bih_A           19 RENNPTVLECIIEGNDQGVKYSWKKDGKSY-NWQEH-NAAL-----RKDEGSLVFLRPQASDEGHYQCFAETPAGVASSR   91 (395)
T ss_dssp             ETTSCEEECCCEESCCSSCEEEEEESSSBC-CTTTT-TEEE-----CTTSCCEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             eCCCEEEEEEEEecCCCCceEEEEECCcCc-ccccc-eEEE-----ecCCceEEEecCCCCCCcEEEEEEEeCCCeEEeE
Confidence            45677888898887 899999999988542 22211 2222     13478999999999999999999965320     


Q ss_pred             ----------CC------CCCCCCcEEEEEEeE----------Ee---------------------cCCcEEEEcccCCC
Q psy534           83 ----------SP------NSHKNGTWFHLDVHG----------VF---------------------NDGTELRISNIRSQ  115 (145)
Q Consensus        83 ----------~~------~~~~~g~~~~l~c~~----------~~---------------------~~~~~L~i~~v~~~  115 (145)
                                .+      .....|+.+.|.|..          +.                     .....|.|.+++.+
T Consensus        92 ~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  171 (395)
T 1bih_A           92 VISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKE  171 (395)
T ss_dssp             CEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGG
T ss_pred             EEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEEEEEeec
Confidence                      11      113468999999971          00                     11236999999999


Q ss_pred             CCe---eeEEEEecCCC
Q psy534          116 DIG---DYTCLATHVLY  129 (145)
Q Consensus       116 d~G---~Y~C~a~n~~g  129 (145)
                      |+|   .|+|.|.|..|
T Consensus       172 d~G~~~~Y~C~a~n~~~  188 (395)
T 1bih_A          172 DVSDIYKYVCTAKNAAV  188 (395)
T ss_dssp             GCCSSEEEEEEEECTTC
T ss_pred             cCCCceEEEEEEEeccc
Confidence            999   99999999988

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.27  E-value=6.5e-12  Score=92.22  Aligned_cols=110  Identities=19%  Similarity=0.198  Sum_probs=78.5

Q ss_pred             hhccceeeEEeecC---------CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCE-EEEEEEE
Q psy534            9 SIFQMLSVGDFADD---------EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQG-WYECKVV   78 (145)
Q Consensus         9 ~~~~~~~~~~w~~g---------~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G-~Y~C~~~   78 (145)
                      ..+.++.+.|-+.+         +|.+.+.|||++.....   ..|.        ..+++|.|.+++.+|+| .|+|.+.
T Consensus        42 ~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~---~~~~--------~~~~~L~i~~v~~~D~Gs~Y~C~a~  110 (329)
T 3oq3_B           42 ALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRP---LNRR--------VKNGDLWIANYTSNDSHRRYLCTVT  110 (329)
T ss_dssp             CTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEE---CSTT--------EETTEEEESSCCGGGGGCCEEEEEE
T ss_pred             ECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccc---cCce--------eecceEEEcCCChHhCCCcEEEEEE
Confidence            45667777787765         36689999999854211   1221        12789999999999999 9999996


Q ss_pred             Eec-------------CCCC--------CCCCCcEEEEEEeE----------E------e--------cCCcEEEEcccC
Q psy534           79 FLN-------------RSPN--------SHKNGTWFHLDVHG----------V------F--------NDGTELRISNIR  113 (145)
Q Consensus        79 ~~~-------------~~~~--------~~~~g~~~~l~c~~----------~------~--------~~~~~L~i~~v~  113 (145)
                      +..             .++.        ....|+.+.|.|..          +      .        ..+..|.|.+++
T Consensus       111 n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~  190 (329)
T 3oq3_B          111 TKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPE  190 (329)
T ss_dssp             CTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEETTEEEECSCC
T ss_pred             eCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecCCCEEEEeecC
Confidence            532             1111        12348899999961          0      0        113589999999


Q ss_pred             CCCCeeeEEEEecC--CC
Q psy534          114 SQDIGDYTCLATHV--LY  129 (145)
Q Consensus       114 ~~d~G~Y~C~a~n~--~g  129 (145)
                      .+|+|.|+|.|.|.  .|
T Consensus       191 ~~D~G~Y~C~a~n~~~~g  208 (329)
T 3oq3_B          191 LEDSGRYDCYVHYDDVRI  208 (329)
T ss_dssp             GGGCEEEEEEEEECCTTS
T ss_pred             hhhCEEEEEEEEecccCC
Confidence            99999999999997  54

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.27  E-value=6e-12  Score=95.18  Aligned_cols=119  Identities=16%  Similarity=0.127  Sum_probs=82.4

Q ss_pred             hhhccceeeEEeecCCCc----cEEEEecCC-CCcc----------cccccceEEEecCCCCCCeeeEEEcccCCCCCEE
Q psy534            8 KSIFQMLSVGDFADDEDI----PVYIWYDSY-PTHE----------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGW   72 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~----p~~~w~k~~-~~~~----------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~   72 (145)
                      ...+.++.+.|.+.+.|.    +.+.||+++ +...          ...+.+|+.+..   ..+..+|.|.+++.+|+|.
T Consensus        13 v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~   89 (438)
T 1qgc_4           13 VSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSG---SRTDFTLTIDPVEADDVAT   89 (438)
T ss_dssp             ECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEE---ETTEEEEEESSCCGGGCEE
T ss_pred             eeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEc---cCCcEEEEeCCCcCcCCee
Confidence            456778899999988886    489999864 1110          123456665532   1346789999999999999


Q ss_pred             EEEEEEEecC----------------CCCC--------CCCCcEEEEEEeE-----------Eec------C--------
Q psy534           73 YECKVVFLNR----------------SPNS--------HKNGTWFHLDVHG-----------VFN------D--------  103 (145)
Q Consensus        73 Y~C~~~~~~~----------------~~~~--------~~~g~~~~l~c~~-----------~~~------~--------  103 (145)
                      |+|.+.+...                +|..        ...|..+.|.|..           +..      .        
T Consensus        90 Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~  169 (438)
T 1qgc_4           90 YYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTD  169 (438)
T ss_dssp             EEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEEC
T ss_pred             EEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceecccc
Confidence            9999965320                1110        0126789999981           000      0        


Q ss_pred             -----C-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 -----G-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 -----~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                           +     ..|.|.+++.+|+|.|+|.|.|..+
T Consensus       170 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  205 (438)
T 1qgc_4          170 QDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  205 (438)
T ss_dssp             CCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTC
T ss_pred             ccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEeccc
Confidence                 1     2688999999999999999999987

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.27  E-value=3.3e-11  Score=87.02  Aligned_cols=114  Identities=15%  Similarity=0.180  Sum_probs=79.0

Q ss_pred             hccceeeEEeec-CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec-------
Q psy534           10 IFQMLSVGDFAD-DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN-------   81 (145)
Q Consensus        10 ~~~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-------   81 (145)
                      .+..+.+.|... |.|.|.+.|+|++... .  ...|+.+...   ....+|.|.+++.+|+|.|+|.+.+..       
T Consensus        15 eg~~v~l~~~~~~~~p~~~v~W~k~~~~i-~--~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s~~   88 (312)
T 2y23_A           15 DDGVISLNFECDKMTPKSEFSWSKDYVST-E--DSPRLEVESK---GNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYL   88 (312)
T ss_dssp             TTCCEEEEEECSSCCTTCCEEEEETTEEC-T--TCTTEEEEEE---TTEEEEEESSCCGGGCEEEEEEESSSCCCCEEEE
T ss_pred             cCCeEEEEEEEeCCCCCcEEEEEECCEEC-C--CCCCEEEEEe---CCEEEEEECcCCccCCEEEEEEEEeCCCcEEEEE
Confidence            455666777765 6899999999998542 2  1235544321   235799999999999999999995411       


Q ss_pred             --C--------------CCC---------CCCCCcEEEEEEeEE----------------ecC-----------C--cEE
Q psy534           82 --R--------------SPN---------SHKNGTWFHLDVHGV----------------FND-----------G--TEL  107 (145)
Q Consensus        82 --~--------------~~~---------~~~~g~~~~l~c~~~----------------~~~-----------~--~~L  107 (145)
                        +              .|.         ....|+.+.|.|...                ...           +  ..|
T Consensus        89 l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L  168 (312)
T 2y23_A           89 IDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEM  168 (312)
T ss_dssp             ECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEE
T ss_pred             EEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEE
Confidence              0              111         124588999999821                000           1  129


Q ss_pred             EEcccCCCCCeeeEEEEecCCC
Q psy534          108 RISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       108 ~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.+++.+|+|.|+|.|.|..+
T Consensus       169 ~i~~~~~~d~G~Y~C~~~~~~~  190 (312)
T 2y23_A          169 FMEKLQDEDEGTYTFQLQDGKA  190 (312)
T ss_dssp             EESCCCGGGCEEEEEEEESSSC
T ss_pred             EEccCCcccCEeEEEEEEeCCc
Confidence            9999999999999999988655

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.27  E-value=1.2e-11  Score=89.74  Aligned_cols=72  Identities=17%  Similarity=0.195  Sum_probs=49.5

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC---Cc-------------ccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP---TH-------------EAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~---~~-------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      ...+..+.+-|.+.+.+  .+.+.||++..   ..             ....+.+|+.+..+ ......+|.|.+++.+|
T Consensus        34 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~v~~~D  112 (291)
T 2gki_A           34 VKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSD-KSSSTAYMELSSLTSED  112 (291)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEE-GGGTEEEEEECSCCGGG
T ss_pred             ecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEe-CCCCEEEEEECcCCHHH
Confidence            45677788889888776  57899998641   10             01234567665321 11246789999999999


Q ss_pred             CEEEEEEEEEe
Q psy534           70 QGWYECKVVFL   80 (145)
Q Consensus        70 ~G~Y~C~~~~~   80 (145)
                      +|.|+|.+.+.
T Consensus       113 sG~Y~C~~~~~  123 (291)
T 2gki_A          113 SAVYYCARGAY  123 (291)
T ss_dssp             CEEEEEEEECG
T ss_pred             CEEEEEEEecc
Confidence            99999998653

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.26  E-value=2.1e-11  Score=87.20  Aligned_cols=70  Identities=17%  Similarity=0.168  Sum_probs=49.7

Q ss_pred             HhhhccceeeEEeecCCC-----ccEEEEecCCC-C--c-c-------cccccceEEEecCCCCCCeeeEEEcccCCCCC
Q psy534            7 VKSIFQMLSVGDFADDED-----IPVYIWYDSYP-T--H-E-------AEEYKGRISRVDKESPFGMASLNLTKIRESDQ   70 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p-----~p~~~w~k~~~-~--~-~-------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   70 (145)
                      ....+..+.+-|.+.+.+     .+.+.||++.. .  . +       ...+.+|+.+..   .....+|.|.+++.+|+
T Consensus        26 ~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~Ds  102 (268)
T 1x9q_A           26 PVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSG---SGTDFTLKINRVEAEDL  102 (268)
T ss_dssp             CCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE---ETTEEEEEESSCCGGGC
T ss_pred             EecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEc---CCCEEEEEECCCChhHC
Confidence            356778889999998876     48899998641 1  0 0       112346666532   13467899999999999


Q ss_pred             EEEEEEEEE
Q psy534           71 GWYECKVVF   79 (145)
Q Consensus        71 G~Y~C~~~~   79 (145)
                      |.|+|.+.+
T Consensus       103 G~Y~C~~~~  111 (268)
T 1x9q_A          103 GVYFCSQST  111 (268)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEEec
Confidence            999999954

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.26  E-value=4.3e-11  Score=91.06  Aligned_cols=121  Identities=13%  Similarity=0.142  Sum_probs=83.0

Q ss_pred             HhhhccceeeEEeecCCC--ccEEEEecCCC-Cc---------------ccccccceEEEecCCCCCCeeeEEEcccCCC
Q psy534            7 VKSIFQMLSVGDFADDED--IPVYIWYDSYP-TH---------------EAEEYKGRISRVDKESPFGMASLNLTKIRES   68 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p--~p~~~w~k~~~-~~---------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~   68 (145)
                      .+..+..+.+-|.+.|.+  .+.+.||++.. ..               ....+.+|+.+..+ ...++++|.|.+++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~~   89 (444)
T 1igt_B           11 LVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRD-NAKNTLYLQMSRLKSE   89 (444)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEE-TTTTEEEEEECSCCGG
T ss_pred             EEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEe-CCCCeEEEEECCCCHH
Confidence            345677888889888764  57789987531 10               11235678876532 1345789999999999


Q ss_pred             CCEEEEEEEEEec-------------C------CC--------CCCCCCcEEEEEEeEE-----------ecC-------
Q psy534           69 DQGWYECKVVFLN-------------R------SP--------NSHKNGTWFHLDVHGV-----------FND-------  103 (145)
Q Consensus        69 D~G~Y~C~~~~~~-------------~------~~--------~~~~~g~~~~l~c~~~-----------~~~-------  103 (145)
                      |+|.|+|.+.+..             +      +|        .....|+.+.|.|...           ..+       
T Consensus        90 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~  169 (444)
T 1igt_B           90 DTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVH  169 (444)
T ss_dssp             GCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEE
T ss_pred             HCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeE
Confidence            9999999996521             0      11        0123588999999820           000       


Q ss_pred             --------C-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 --------G-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 --------~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                              +     ..|.|.++..+| |.|+|.|.|..|
T Consensus       170 ~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~  207 (444)
T 1igt_B          170 TFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPAS  207 (444)
T ss_dssp             ECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTT
T ss_pred             ecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCC
Confidence                    1     247788888889 999999999987

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.26  E-value=3.6e-12  Score=92.54  Aligned_cols=116  Identities=21%  Similarity=0.190  Sum_probs=83.0

Q ss_pred             HhhhccceeeEEeecCCC-ccEEEEecCCCCc-ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec---
Q psy534            7 VKSIFQMLSVGDFADDED-IPVYIWYDSYPTH-EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN---   81 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p-~p~~~w~k~~~~~-~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~---   81 (145)
                      ....+.++.+.|-+.|.| .+.+.|+|++... +......|+..       .+.+|.|.+++.+|+|.|+|.+.+..   
T Consensus        16 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~   88 (315)
T 1itb_B           16 VSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ-------HKEKLWFVPAKVEDSGHYYCVVRNSSYCL   88 (315)
T ss_dssp             EEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEE-------CSSBEECTTCCGGGCSCCEECCCSSSCCC
T ss_pred             EEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEec-------cCCeEEECCCChhhCEEEEEEEeCCceEE
Confidence            345667788889888876 8899999997531 22233445443       25689999999999999999995432   


Q ss_pred             ----------CCCC-----------CCCCCcEEEEEEeE---------------E--------------ecCCcEEEEcc
Q psy534           82 ----------RSPN-----------SHKNGTWFHLDVHG---------------V--------------FNDGTELRISN  111 (145)
Q Consensus        82 ----------~~~~-----------~~~~g~~~~l~c~~---------------~--------------~~~~~~L~i~~  111 (145)
                                .+|.           ....|+.+.|.|..               +              ...+..|.|.+
T Consensus        89 ~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~  168 (315)
T 1itb_B           89 RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMN  168 (315)
T ss_dssp             CEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESS
T ss_pred             EEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEe
Confidence                      1111           02248899999941               0              01234899999


Q ss_pred             cCCCCCeeeEEEEe-cCCC
Q psy534          112 IRSQDIGDYTCLAT-HVLY  129 (145)
Q Consensus       112 v~~~d~G~Y~C~a~-n~~g  129 (145)
                      ++.+|+|.|+|.|. |..|
T Consensus       169 v~~~d~G~Y~C~a~~n~~g  187 (315)
T 1itb_B          169 VAEKHRGNYTCHASYTYLG  187 (315)
T ss_dssp             CCGGGCEEEEEEEEEEETT
T ss_pred             ceehhCcEEEEEEEcCCCC
Confidence            99999999999999 7777

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.25  E-value=2.5e-11  Score=88.79  Aligned_cols=119  Identities=13%  Similarity=0.126  Sum_probs=70.2

Q ss_pred             hhccceeeEEeecCCCcc--EEEEecCCCCcccccccceEEEecCCCCC-CeeeEEEcccCCCCCEEEEEEEEEecC---
Q psy534            9 SIFQMLSVGDFADDEDIP--VYIWYDSYPTHEAEEYKGRISRVDKESPF-GMASLNLTKIRESDQGWYECKVVFLNR---   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p--~~~w~k~~~~~~~~~~~~R~~~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~~---   82 (145)
                      ..+.++.+.|.+.|.|.|  .+.|++++..... .. .+......+... -...|.|.....+|.|.|.|.+.+...   
T Consensus       130 ~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~-~~-~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~  207 (327)
T 2wng_A          130 TPQHTVSFTCESHGFSPRDITLKWFKNGNELSD-FQ-TNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGD  207 (327)
T ss_dssp             CTTCEEEEEEEEEEEBSSCCEEEEEETTEECCC-EE-EEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSC
T ss_pred             CCCCEEEEEEEEeCccCCCcEEEEEECCEEccc-cc-cccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCC
Confidence            456678889999987665  8999998754211 11 111110000000 144688887777788999999976311   


Q ss_pred             --------------CC------CCCCCCcEEEEEEeEE-----------e-----------------cCC-----cEEEE
Q psy534           83 --------------SP------NSHKNGTWFHLDVHGV-----------F-----------------NDG-----TELRI  109 (145)
Q Consensus        83 --------------~~------~~~~~g~~~~l~c~~~-----------~-----------------~~~-----~~L~i  109 (145)
                                    +|      .....|..+.|.|...           .                 .++     ..|.|
T Consensus       208 ~~~~~~~~~~~v~~~P~i~~~~~~~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i  287 (327)
T 2wng_A          208 PLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLV  287 (327)
T ss_dssp             CEEEEEEGGGTBCBCCEEEEEEECCSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC
T ss_pred             cccceEEeccccCCCCEEEEecCCcCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEE
Confidence                          11      1134688999999810           0                 111     23677


Q ss_pred             cccCCCCCeeeEEEEecCCC
Q psy534          110 SNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       110 ~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..+..+|+|.|+|.|.|..|
T Consensus       288 ~~~~~~d~G~Y~C~a~N~~~  307 (327)
T 2wng_A          288 NVSAHRDDVKLTCQVEHDGQ  307 (327)
T ss_dssp             -------CCEEEEEEEETTC
T ss_pred             ccccccCCCEEEEEEEeCCC
Confidence            78888999999999999998

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.25  E-value=1.2e-10  Score=83.96  Aligned_cols=114  Identities=13%  Similarity=0.113  Sum_probs=78.6

Q ss_pred             hccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcc-cCCCCCEEEEEEEEEecC------
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTK-IRESDQGWYECKVVFLNR------   82 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~-v~~~D~G~Y~C~~~~~~~------   82 (145)
                      .+.++.+.|.+.|.|.|.+.|++++... ..  ..+..+..   .....+|.|.+ ++.+|+|.|+|.+.+...      
T Consensus       118 ~g~~~~l~C~~~g~p~p~i~W~~~~~~~-~~--~~~~~~~~---~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~  191 (305)
T 2nzi_A          118 RGEVVSIKIPFSGKPDPVITWQKGQDLI-DN--NGHYQVIV---TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTV  191 (305)
T ss_dssp             TTCCEEEEEEEEEESCCEEEEEESSSBC-CS--SSSCEEEE---CSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEE
T ss_pred             CCCEEEEEEEECCCCCCEEEEEECCEEC-CC--CCcEEEEE---cCCceEEEEecCCccCccEEEEEEEEeCCCceeeEE
Confidence            4667888999999999999999987542 21  22333321   12478899999 999999999999965320      


Q ss_pred             ------CCCC-------CCCCcEEEEEEe--------------E-------------EecCCcEEEEcccCCCCCeeeEE
Q psy534           83 ------SPNS-------HKNGTWFHLDVH--------------G-------------VFNDGTELRISNIRSQDIGDYTC  122 (145)
Q Consensus        83 ------~~~~-------~~~g~~~~l~c~--------------~-------------~~~~~~~L~i~~v~~~d~G~Y~C  122 (145)
                            .|.+       ...+..+.|.|.              .             .......|.|.++...+.|.|+|
T Consensus       192 ~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~i~~l~~~~~y~~~~  271 (305)
T 2nzi_A          192 ELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRV  271 (305)
T ss_dssp             EEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETTSCCEEEEEEESSSEEEECSCCSSCEEEEEE
T ss_pred             EEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEEEEEecCCCCccEECccccCceEEecCCCCCCeEEEEE
Confidence                  1111       112344444443              0             01123479999999999999999


Q ss_pred             EEecCCC
Q psy534          123 LATHVLY  129 (145)
Q Consensus       123 ~a~n~~g  129 (145)
                      .|.|..|
T Consensus       272 ~A~N~~G  278 (305)
T 2nzi_A          272 IAENKFG  278 (305)
T ss_dssp             EEEETTE
T ss_pred             EEEeCCc
Confidence            9999998

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.25  E-value=3.6e-11  Score=86.23  Aligned_cols=121  Identities=12%  Similarity=0.144  Sum_probs=80.8

Q ss_pred             HhhhccceeeEEeecCCC--ccEEEEecCCC--Cc--------------ccccccceEEEecCCCCCCeeeEEEcccCCC
Q psy534            7 VKSIFQMLSVGDFADDED--IPVYIWYDSYP--TH--------------EAEEYKGRISRVDKESPFGMASLNLTKIRES   68 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p--~p~~~w~k~~~--~~--------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~   68 (145)
                      .+..+..+.+.|.+.+.+  .+.+.||++..  ..              ....+.+|+.+..+. ..++.+|.|.+++.+
T Consensus        17 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~sL~I~~v~~~   95 (261)
T 2xqy_G           17 LVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDK-SSSTVYIQLSSLTSE   95 (261)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEG-GGTEEEEEECSCCGG
T ss_pred             EEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecC-CCCEEEEEEcCCCcc
Confidence            345677888899988776  67899998641  10              012346788764321 234789999999999


Q ss_pred             CCEEEEEEEEEec-------------C------CCC--------CCCCCcEEEEEEeEE-----------ecC-------
Q psy534           69 DQGWYECKVVFLN-------------R------SPN--------SHKNGTWFHLDVHGV-----------FND-------  103 (145)
Q Consensus        69 D~G~Y~C~~~~~~-------------~------~~~--------~~~~g~~~~l~c~~~-----------~~~-------  103 (145)
                      |+|.|+|.+.+..             +      +|.        ....|..+.|.|...           ..+       
T Consensus        96 DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~~~~  175 (261)
T 2xqy_G           96 DSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVH  175 (261)
T ss_dssp             GCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEE
T ss_pred             cCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCCcCceE
Confidence            9999999996520             0      010        112488999999810           000       


Q ss_pred             -------------CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 -------------GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 -------------~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                                   ...|.|..+..+| |.|+|.|.|...
T Consensus       176 ~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~  213 (261)
T 2xqy_G          176 TFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPAS  213 (261)
T ss_dssp             ECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGG
T ss_pred             ecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCC
Confidence                         1247787777777 999999999754

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.25  E-value=1.8e-11  Score=94.85  Aligned_cols=122  Identities=17%  Similarity=0.134  Sum_probs=83.5

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCE-EEEEEEEEecC-----
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQG-WYECKVVFLNR-----   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G-~Y~C~~~~~~~-----   82 (145)
                      ..+.++.+.|-+.|.|.+.+.||+.++..+..  ..|+.+.      .+.+|.|.+++.+|+| .|+|.+.+...     
T Consensus       127 ~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~--~~~~~~~------~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~  198 (524)
T 2ec8_A          127 KEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPK--DLRFIPD------PKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSE  198 (524)
T ss_dssp             ETTSCEEECCCBSCCCCSCEEEECSSSCCCCS--SCEEEEE------TTTEEEEESCCGGGTTCEEEEEEC----CCCCC
T ss_pred             EcCCeEEEECcCCCCccceEEEEccCCcCcCC--CCceeEC------CCccEEEeccchhhCCceEEEEEEECCceEEEE
Confidence            34567788888888777999999843332321  2344442      2668999999999999 99999954310     


Q ss_pred             ------------CCC--------CCCCCcEEEEEEeEE----------e----------------------cCCcEEEEc
Q psy534           83 ------------SPN--------SHKNGTWFHLDVHGV----------F----------------------NDGTELRIS  110 (145)
Q Consensus        83 ------------~~~--------~~~~g~~~~l~c~~~----------~----------------------~~~~~L~i~  110 (145)
                                  +|.        ....|+.+.|.|...          .                      .....|.|.
T Consensus       199 ~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~  278 (524)
T 2ec8_A          199 KFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTIS  278 (524)
T ss_dssp             CEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEES
T ss_pred             EEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEEC
Confidence                        110        023488999999810          0                      012468999


Q ss_pred             ccCCCCCeeeEEEEecCCC-----CcEEEEeCe
Q psy534          111 NIRSQDIGDYTCLATHVLY-----PDLLVVLGS  138 (145)
Q Consensus       111 ~v~~~d~G~Y~C~a~n~~g-----~~~~v~~~~  138 (145)
                      +++.+|+|.|+|.|.|..|     ..+.|....
T Consensus       279 ~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p  311 (524)
T 2ec8_A          279 SARVNDSGVFMCYANNTFGSANVTTTLEVVDKG  311 (524)
T ss_dssp             SCCTTTCEEEEEEEECSSCEEEEEEEEEEESSC
T ss_pred             CCCHHHCEEEEEEEEecCCceEEEEEEEEeccC
Confidence            9999999999999999998     445554433

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.24  E-value=2.3e-11  Score=85.36  Aligned_cols=68  Identities=13%  Similarity=0.110  Sum_probs=48.3

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC--------------CcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP--------------THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWY   73 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~--------------~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   73 (145)
                      +..+..+.+-|-+.+ +.+.+.|||...              ......+.+|+.+..+  ..++++|.|.+++.+|+|.|
T Consensus        14 v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~sL~I~~v~~~D~G~Y   90 (240)
T 3q5y_A           14 KEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQF--DDYHSEMNMSALELEDSAMY   90 (240)
T ss_dssp             EETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEEC--TTSCEEEEECSCCGGGCEEE
T ss_pred             ecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeC--CCCEEEEEECcCChhHCEEE
Confidence            455677788887765 677888988321              1122335567776542  24578999999999999999


Q ss_pred             EEEEE
Q psy534           74 ECKVV   78 (145)
Q Consensus        74 ~C~~~   78 (145)
                      +|.+.
T Consensus        91 ~C~~~   95 (240)
T 3q5y_A           91 FCASS   95 (240)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99996

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.24  E-value=7.2e-13  Score=106.58  Aligned_cols=119  Identities=23%  Similarity=0.286  Sum_probs=0.0

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEE----------------EecCCCCCCeeeEEEcccCCCCCEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRIS----------------RVDKESPFGMASLNLTKIRESDQGW   72 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~----------------~~~~~~~~~~~sL~I~~v~~~D~G~   72 (145)
                      ..+.++.+.|.+.|.|.+.+.|++++...... ..++..                .+. .......+|.|.+++.+|+|.
T Consensus       562 ~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~  639 (772)
T 3v2a_R          562 TEQESVSLWCTADRSTFENLTWYKLGPQPLPI-HVGELPTPVCKNLDTLWKLNATMFS-NSTNDILIMELKNASLQDQGD  639 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCceEEEEeccCCCCCCcEEEEcCCccccc-ccCcccccccccccceeeccceeee-cCCCceEEEEECCCCccCCcE
Confidence            35667778898889999999999987532211 111110                000 001123459999999999999


Q ss_pred             EEEEEEEecC----------------CCC--------CCCCCcEEEEEEeE---------E---------------ecCC
Q psy534           73 YECKVVFLNR----------------SPN--------SHKNGTWFHLDVHG---------V---------------FNDG  104 (145)
Q Consensus        73 Y~C~~~~~~~----------------~~~--------~~~~g~~~~l~c~~---------~---------------~~~~  104 (145)
                      |.|.+.+...                +|.        ....|+.+.|.|..         +               ...+
T Consensus       640 Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~  719 (772)
T 3v2a_R          640 YVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN  719 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEeCCCCeEEEEEEeecccccCCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCCeEEcCCC
Confidence            9999976210                110        12348899999981         0               0113


Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|.+|
T Consensus       720 ~~L~I~~v~~~D~G~Y~C~a~N~~G  744 (772)
T 3v2a_R          720 RNLTIRRVRKEDEGLYTCQACSVLG  744 (772)
T ss_dssp             -------------------------
T ss_pred             cEEEECcCCHHHCEEEEEEEEeCCc
Confidence            5799999999999999999999998

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.22  E-value=2.6e-11  Score=86.18  Aligned_cols=120  Identities=13%  Similarity=0.131  Sum_probs=77.4

Q ss_pred             hhhccceeeEEeecCC--CccEEEEecCCCC----------------cccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDE--DIPVYIWYDSYPT----------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~--p~p~~~w~k~~~~----------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|.+.+.  +.+.+.||+....                .....+++|+.+..+ ...++.+|.|.+++.+|
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~v~~~D   90 (253)
T 3liz_H           12 VQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRD-NAKNTLFLQMSSLKSED   90 (253)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEE-GGGTEEEEEECSCCGGG
T ss_pred             ECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEe-CCCCEEEEEECCCChhh
Confidence            4456677777777652  3456777764310                112346678877532 12357789999999999


Q ss_pred             CEEEEEEEEEec--------------C------CC--------CCCCCCcEEEEEEeEE-----------ecC-------
Q psy534           70 QGWYECKVVFLN--------------R------SP--------NSHKNGTWFHLDVHGV-----------FND-------  103 (145)
Q Consensus        70 ~G~Y~C~~~~~~--------------~------~~--------~~~~~g~~~~l~c~~~-----------~~~-------  103 (145)
                      +|.|+|.+.+..              +      .|        .....|..+.|.|...           ..+       
T Consensus        91 sG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~  170 (253)
T 3liz_H           91 TAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH  170 (253)
T ss_dssp             CEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE
T ss_pred             CEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecceE
Confidence            999999986430              0      11        0122488999999810           000       


Q ss_pred             --------C-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 --------G-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 --------~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                              +     ..|.|.....+| |.|+|.|+|..+
T Consensus       171 ~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~  208 (253)
T 3liz_H          171 TFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPAS  208 (253)
T ss_dssp             ECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGG
T ss_pred             eCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCC
Confidence                    1     257788888888 999999999987

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.21  E-value=1.4e-10  Score=81.55  Aligned_cols=68  Identities=15%  Similarity=0.179  Sum_probs=49.0

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCC--------------CCccccccc-ceEEEecCCCCCCeeeEEEcccCCCCCEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSY--------------PTHEAEEYK-GRISRVDKESPFGMASLNLTKIRESDQGW   72 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~--------------~~~~~~~~~-~R~~~~~~~~~~~~~sL~I~~v~~~D~G~   72 (145)
                      +..+..+.+-| ..+.+.+.+.|||..              .......+. +|+.+..+  ..++.+|.|.+++.+|+|.
T Consensus        14 v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~sL~I~~v~~~D~G~   90 (245)
T 4ei6_B           14 IDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERP--DGSYFTLKIQPTALEDSAV   90 (245)
T ss_dssp             EETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECC--TTSCEEEEECSCCGGGCEE
T ss_pred             ecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEec--cCceEEEEECCCCHhHCEE
Confidence            45677888888 667788899998821              111122333 77776542  2457899999999999999


Q ss_pred             EEEEEE
Q psy534           73 YECKVV   78 (145)
Q Consensus        73 Y~C~~~   78 (145)
                      |+|.+.
T Consensus        91 Y~C~~~   96 (245)
T 4ei6_B           91 YFCASS   96 (245)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            999997

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.21  E-value=2.4e-11  Score=95.25  Aligned_cols=63  Identities=10%  Similarity=-0.108  Sum_probs=47.6

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+..+.+.|-+.|.|.|.+.|+|++..... .  .+.       .....+|.|.+++.+|+|.|+|.|.+.
T Consensus       338 v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~-~--~~~-------~~~~~~L~I~~v~~~D~G~YtC~A~N~  400 (527)
T 3qs9_E          338 IDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC-E--QKG-------LDNGYSISKFCNHKHQPGEYIFHAEND  400 (527)
T ss_dssp             CCTTCCCCEEEEEEEESCCEEEEEETTEEEEC-B--CCB-------CSSSSEEEEECCCTTCCSCEEEEEEET
T ss_pred             EcCCCeEEEEEEEEecCCCEEEEEECCEECcC-C--ccc-------ccCCcEEEEecCCcccCEEEEEEEEeC
Confidence            34567788889999999999999999854211 1  111       123678999999999999999999764

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.20  E-value=7e-11  Score=90.29  Aligned_cols=121  Identities=17%  Similarity=0.174  Sum_probs=82.9

Q ss_pred             HhhhccceeeEEeecCCC--ccEEEEecCCC---Cc-------------ccccccceEEEecCCCCCCeeeEEEcccCCC
Q psy534            7 VKSIFQMLSVGDFADDED--IPVYIWYDSYP---TH-------------EAEEYKGRISRVDKESPFGMASLNLTKIRES   68 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p--~p~~~w~k~~~---~~-------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~   68 (145)
                      .+..+.++.+-|.+.+.+  .+.+.||++..   ..             ....+.+|+.+..+ ...+.++|.|.+++.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~~   89 (457)
T 1hzh_H           11 VKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTAD-TSANTAYMELRSLRSA   89 (457)
T ss_dssp             EECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEE-TTTTEEEEEECSCCGG
T ss_pred             EEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEe-CCCCEEEEEECCCCcc
Confidence            345677888889888776  67899987531   10             11235678876532 2234689999999999


Q ss_pred             CCEEEEEEEEEec----------------------C------CC--------CCCCCCcEEEEEEeEE-----------e
Q psy534           69 DQGWYECKVVFLN----------------------R------SP--------NSHKNGTWFHLDVHGV-----------F  101 (145)
Q Consensus        69 D~G~Y~C~~~~~~----------------------~------~~--------~~~~~g~~~~l~c~~~-----------~  101 (145)
                      |+|.|+|.+.+..                      +      +|        .....|+.+.|.|...           .
T Consensus        90 D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~  169 (457)
T 1hzh_H           90 DTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN  169 (457)
T ss_dssp             GCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEET
T ss_pred             cCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEEE
Confidence            9999999996431                      0      11        0123588999999810           0


Q ss_pred             ---------------cCCc------EEEEcccCCCCCeeeEEEEecCCC
Q psy534          102 ---------------NDGT------ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       102 ---------------~~~~------~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                                     ..+.      .|.|.++..+| |.|+|.|.|..+
T Consensus       170 k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~  217 (457)
T 1hzh_H          170 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  217 (457)
T ss_dssp             TTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGG
T ss_pred             eCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCC
Confidence                           0111      58888998889 999999999876

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.20  E-value=9.3e-11  Score=83.60  Aligned_cols=69  Identities=12%  Similarity=0.161  Sum_probs=47.3

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCC--CC------------ccccccc-ceEEEecCCCCCCeeeEEEcccCCCCCEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSY--PT------------HEAEEYK-GRISRVDKESPFGMASLNLTKIRESDQGW   72 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~--~~------------~~~~~~~-~R~~~~~~~~~~~~~sL~I~~v~~~D~G~   72 (145)
                      +..+..+.+-|.+. .+.+.+.|||..  ..            .....+. +|+.+..+  ..++++|.|.+++.+|+|.
T Consensus        38 v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~sL~I~~v~~~D~G~  114 (268)
T 3pl6_D           38 TEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRP--EGSVSTLKIQRTERGDSAV  114 (268)
T ss_dssp             EETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECT--TSSSEEEEECSCCGGGCEE
T ss_pred             ecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEec--CCCEEEEEECCCCcccCEE
Confidence            34566677777765 466788888732  11            1122233 77777542  3458899999999999999


Q ss_pred             EEEEEEE
Q psy534           73 YECKVVF   79 (145)
Q Consensus        73 Y~C~~~~   79 (145)
                      |+|.+.+
T Consensus       115 Y~C~~~~  121 (268)
T 3pl6_D          115 YLCATSA  121 (268)
T ss_dssp             EEEEEES
T ss_pred             EEEEEec
Confidence            9999974

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.20  E-value=5.1e-10  Score=78.56  Aligned_cols=122  Identities=13%  Similarity=0.105  Sum_probs=78.0

Q ss_pred             HhhhccceeeEEeecCCC--ccEEEEecCCC---Cc------------ccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            7 VKSIFQMLSVGDFADDED--IPVYIWYDSYP---TH------------EAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p--~p~~~w~k~~~---~~------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      .+..+..+.+-|.+.+.+  .+.+.||+...   ..            ....+.+|+.+..+ ...++.+|.|.+++.+|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~~D   89 (232)
T 1dn0_B           11 LLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVD-TSKNQFSLKLSSVTAAD   89 (232)
T ss_dssp             EECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEE-TTTTEEEEEECSCCGGG
T ss_pred             EEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEe-CCCCEEEEEECCCCccc
Confidence            345677888889887654  57788987531   10            11235678877532 12347799999999999


Q ss_pred             CEEEEEEEE--Ee--------c------C-C-----CC--------CCCCC-cEEEEEEeE-----------Eec-CC--
Q psy534           70 QGWYECKVV--FL--------N------R-S-----PN--------SHKNG-TWFHLDVHG-----------VFN-DG--  104 (145)
Q Consensus        70 ~G~Y~C~~~--~~--------~------~-~-----~~--------~~~~g-~~~~l~c~~-----------~~~-~~--  104 (145)
                      +|.|+|.+.  +.        .      + .     |.        ....| ..+.|.|..           +.. ++  
T Consensus        90 ~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~  169 (232)
T 1dn0_B           90 TAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSD  169 (232)
T ss_dssp             CEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCE
T ss_pred             CEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCc
Confidence            999999997  21        0      0 1     10        01246 889999981           111 21  


Q ss_pred             -------------------cEEEEcccCC--CCCeeeEEEEecCCC
Q psy534          105 -------------------TELRISNIRS--QDIGDYTCLATHVLY  129 (145)
Q Consensus       105 -------------------~~L~i~~v~~--~d~G~Y~C~a~n~~g  129 (145)
                                         ..|.|.....  +|.|.|+|.|.|..+
T Consensus       170 l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~  215 (232)
T 1dn0_B          170 ISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNG  215 (232)
T ss_dssp             ECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTC
T ss_pred             eeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCC
Confidence                               1356666665  779999999999987

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.20  E-value=5.2e-11  Score=73.53  Aligned_cols=69  Identities=16%  Similarity=0.159  Sum_probs=52.9

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|-+.|.|.|.+.|++++.. +...-..|+.+...   ....+|.|.+++.+|+|.|.|.|.|.
T Consensus        17 v~~G~~~~l~C~~~g~P~p~v~W~k~g~~-i~~~~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N~   85 (100)
T 3knb_A           17 IDEGKVLTVACAFTGEPTPEVTWSCGGRK-IHSQEQGRFHIENT---DDLTTLIIMDVQKQDGGLYTLSLGNE   85 (100)
T ss_dssp             EETTSEEEEEEEEEEESCCEEEEEETTEE-CCTTGGGTEEEEEC---SSEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             EeCCCeEEEEEEEEEecCCEEEEEECceE-eeeeccceeeeecc---cceEEEEEcCCCccCCEEEEEEEEEC
Confidence            34567888999999999999999999854 33333445655332   33678999999999999999999863

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.19  E-value=4.3e-11  Score=90.90  Aligned_cols=121  Identities=12%  Similarity=0.141  Sum_probs=81.7

Q ss_pred             HhhhccceeeEEeecCCC--ccEEEEecCCC--Cc--------------ccccccceEEEecCCCCCCeeeEEEcccCCC
Q psy534            7 VKSIFQMLSVGDFADDED--IPVYIWYDSYP--TH--------------EAEEYKGRISRVDKESPFGMASLNLTKIRES   68 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p--~p~~~w~k~~~--~~--------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~   68 (145)
                      ....+.++.+.|.+.|.+  .+.+.||++..  ..              ....+.+|+.+..+ ...+.++|.|.+++.+
T Consensus        10 ~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~~   88 (434)
T 1igy_B           10 LARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRD-RSSNTANIHLSSLTSD   88 (434)
T ss_dssp             EECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBC-GGGCBBCEEECSBCGG
T ss_pred             EecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEE-CCCCEEEEEECCCChH
Confidence            345677888888888764  67788987631  10              11235678776432 1233678999999999


Q ss_pred             CCEEEEEEEEEec----------C------CC--------CCCCCCcEEEEEEeEE--------e---cCC---------
Q psy534           69 DQGWYECKVVFLN----------R------SP--------NSHKNGTWFHLDVHGV--------F---NDG---------  104 (145)
Q Consensus        69 D~G~Y~C~~~~~~----------~------~~--------~~~~~g~~~~l~c~~~--------~---~~~---------  104 (145)
                      |+|.|+|.+.+..          +      +|        .....|..+.|.|...        +   .++         
T Consensus        89 D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~  168 (434)
T 1igy_B           89 DSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFP  168 (434)
T ss_dssp             GCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECC
T ss_pred             HCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecC
Confidence            9999999985421          0      11        1123689999999821        0   011         


Q ss_pred             -----------cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 -----------TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 -----------~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                                 ..|.|.++..+| |.|+|.|.|..|
T Consensus       169 ~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~  203 (434)
T 1igy_B          169 AVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPAS  203 (434)
T ss_dssp             CEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTT
T ss_pred             ceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCC
Confidence                       247888888888 999999999988

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.18  E-value=1.2e-10  Score=82.23  Aligned_cols=121  Identities=16%  Similarity=0.192  Sum_probs=78.7

Q ss_pred             HhhhccceeeEEeecCCC----ccEEEEecCCCC---------------------cccccccceEEEecCCCCCCeeeEE
Q psy534            7 VKSIFQMLSVGDFADDED----IPVYIWYDSYPT---------------------HEAEEYKGRISRVDKESPFGMASLN   61 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p----~p~~~w~k~~~~---------------------~~~~~~~~R~~~~~~~~~~~~~sL~   61 (145)
                      .+..+..+.+-|.+.+.+    ...+.||+....                     .....+++|+.+..+ ......+|.
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~   89 (239)
T 3tv3_H           11 LVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALD-TPKNLVFLK   89 (239)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEE-GGGTEEEEE
T ss_pred             EEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEE-CCCCEEEEE
Confidence            355677788888877654    347888874310                     011245678876532 123467899


Q ss_pred             EcccCCCCCEEEEEEEEEe-------------c----------C------CC--------CCCCCCcEEEEEEeE-----
Q psy534           62 LTKIRESDQGWYECKVVFL-------------N----------R------SP--------NSHKNGTWFHLDVHG-----   99 (145)
Q Consensus        62 I~~v~~~D~G~Y~C~~~~~-------------~----------~------~~--------~~~~~g~~~~l~c~~-----   99 (145)
                      |.+++.+|+|.|+|.+.+.             .          +      .|        .....|..+.|.|..     
T Consensus        90 I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~~p  169 (239)
T 3tv3_H           90 LNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  169 (239)
T ss_dssp             ECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEEEEBS
T ss_pred             ECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEeeEeC
Confidence            9999999999999998532             0          0      01        012348899999981     


Q ss_pred             ------Ee---------------c-CC-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          100 ------VF---------------N-DG-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       100 ------~~---------------~-~~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                            +.               . ++     ..|.|.....+| |.|+|.|+|..+
T Consensus       170 ~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~  225 (239)
T 3tv3_H          170 EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  225 (239)
T ss_dssp             SCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGG
T ss_pred             CCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCC
Confidence                  00               1 11     247788888888 999999999875

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.17  E-value=7.9e-11  Score=92.40  Aligned_cols=65  Identities=15%  Similarity=0.153  Sum_probs=49.8

Q ss_pred             hhccceeeEEee-cCCCccEEEEecCCCCcc---------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            9 SIFQMLSVGDFA-DDEDIPVYIWYDSYPTHE---------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         9 ~~~~~~~~~~w~-~g~p~p~~~w~k~~~~~~---------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+.++.+.|-+ .+.|.+.+.|++++....         ...+.+|..+.      .+++|.|.+++.+|+|.|+|++.
T Consensus       379 ~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~------~~~~L~i~~v~~~D~G~Y~C~~~  452 (581)
T 3o3u_N          379 RIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVL------PNGSLFLPAVGIQDEGIFRCQAM  452 (581)
T ss_dssp             ETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEEC------TTSCEEESSCCGGGCEEEEEEEE
T ss_pred             ecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEc------CCceEEEeccccccCeEEEEEEE
Confidence            456778888988 688999999999864210         12456676662      36799999999999999999995


Q ss_pred             E
Q psy534           79 F   79 (145)
Q Consensus        79 ~   79 (145)
                      +
T Consensus       453 n  453 (581)
T 3o3u_N          453 N  453 (581)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.17  E-value=1.7e-10  Score=79.98  Aligned_cols=72  Identities=17%  Similarity=0.132  Sum_probs=51.5

Q ss_pred             HhhhccceeeEEeecCCC--ccEEEEecCCC---Cc------------ccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            7 VKSIFQMLSVGDFADDED--IPVYIWYDSYP---TH------------EAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p--~p~~~w~k~~~---~~------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      .+..+..+.+-|.+.+.+  .+.+.||++..   ..            ....+.+|+.+..+ ...++.+|.|.+++.+|
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~~D   89 (215)
T 1c5d_H           11 LVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRD-TSKSQVFLKMNSLQTED   89 (215)
T ss_dssp             EECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEE-TTTTEEEEEESSCCGGG
T ss_pred             eecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEee-CCCceEEEEECCCCccc
Confidence            345677888999988764  57899988631   10            11235678887532 12346899999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|+|.+.+
T Consensus        90 ~G~Y~C~~~~   99 (215)
T 1c5d_H           90 TAIYFCTRED   99 (215)
T ss_dssp             CEEEEEEECC
T ss_pred             CEEEEEEEec
Confidence            9999999965

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.16  E-value=1.5e-10  Score=82.77  Aligned_cols=113  Identities=13%  Similarity=0.052  Sum_probs=76.7

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec------
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN------   81 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~------   81 (145)
                      ...+.++.+.|-+.|.    +.|+++.....      +...     .....+|.|.+++.+|+|.|+|.+.+..      
T Consensus        16 v~~G~~v~L~C~~~~~----v~W~~~~~~~~------~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~   80 (289)
T 3ejj_X           16 VEPGETVTLRCVSNGS----VEWDGPISPYW------TLDP-----ESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTT   80 (289)
T ss_dssp             ECTTCCEEEEEECSSC----CEEECSCSSSS------EECC-----CSSCCEEEESSCCGGGCEEEEEECCC-----CEE
T ss_pred             ECCCCCEEEEEEeCCc----EEEccCCCceE------EEec-----cCCccEEEEeeeccccCEEEEEEEeccCCcceeE
Confidence            3457778888888773    89997764311      1111     2347889999999999999999974321      


Q ss_pred             ----C--CCCC---------CCCCcEEEEEEeE----------E---------------ecCCcEEEEcccCCCCCeeeE
Q psy534           82 ----R--SPNS---------HKNGTWFHLDVHG----------V---------------FNDGTELRISNIRSQDIGDYT  121 (145)
Q Consensus        82 ----~--~~~~---------~~~g~~~~l~c~~----------~---------------~~~~~~L~i~~v~~~d~G~Y~  121 (145)
                          +  ++..         ...|+.+.|.|..          +               ...+..|.|.+++.+|+|.|+
T Consensus        81 ~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  160 (289)
T 3ejj_X           81 IHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYV  160 (289)
T ss_dssp             EEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGCEEEE
T ss_pred             EEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCCCEEEeecccccCEEEE
Confidence                1  1111         2348899999981          1               112347999999999999999


Q ss_pred             EEEec-CCC-----CcEEEE
Q psy534          122 CLATH-VLY-----PDLLVV  135 (145)
Q Consensus       122 C~a~n-~~g-----~~~~v~  135 (145)
                      |.|.| ..+     ..+.|.
T Consensus       161 C~a~~~~~~~~~~~~~l~V~  180 (289)
T 3ejj_X          161 CKTMVNGRESTSTGIWLKVN  180 (289)
T ss_dssp             EEEEETTEEEECCCEEEEEE
T ss_pred             EEEEeCCCccccccEEEEEE
Confidence            99994 333     455554

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.15  E-value=1.9e-10  Score=80.59  Aligned_cols=120  Identities=17%  Similarity=0.215  Sum_probs=75.9

Q ss_pred             hhhccceeeEEeecCC--CccEEEEecCCC----------------CcccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDE--DIPVYIWYDSYP----------------THEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~--p~p~~~w~k~~~----------------~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|.+.+.  +...+.||+...                ......+++|+.+..+ ...++.+|.|.+++.+|
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~v~~~D   90 (230)
T 3n9g_H           12 RKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRD-TSTSTVYMELSSLRSED   90 (230)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEE-TTTTEEEEEECSCCGGG
T ss_pred             EcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEec-CCCCEEEEEECCCChhh
Confidence            3455566666666531  234566665321                0112346678887543 23457889999999999


Q ss_pred             CEEEEEEEEEec------------------C------CC--------CCCCCCcEEEEEEeEE--------e--------
Q psy534           70 QGWYECKVVFLN------------------R------SP--------NSHKNGTWFHLDVHGV--------F--------  101 (145)
Q Consensus        70 ~G~Y~C~~~~~~------------------~------~~--------~~~~~g~~~~l~c~~~--------~--------  101 (145)
                      +|.|+|.+....                  +      +|        .....|..+.|.|...        +        
T Consensus        91 sG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~~~~~~  170 (230)
T 3n9g_H           91 TAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALT  170 (230)
T ss_dssp             CEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             CEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEECCcccC
Confidence            999999986421                  0      11        0123588999999810        0        


Q ss_pred             ----------c-CC-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          102 ----------N-DG-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       102 ----------~-~~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                                . ++     ..|.|.....+| |.|+|.|+|..+
T Consensus       171 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~  213 (230)
T 3n9g_H          171 SGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  213 (230)
T ss_dssp             TTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGG
T ss_pred             CCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCC
Confidence                      0 11     257788888888 999999999875

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.15  E-value=7.6e-11  Score=89.98  Aligned_cols=115  Identities=12%  Similarity=-0.014  Sum_probs=71.2

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-----
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-----   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-----   82 (145)
                      ...+..+.+.|-+.|.|.|.+.|++++.... .    +..+..  ......+|.|.+++.+|+|.|.|.|.+...     
T Consensus        60 V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~-~----~~~~~~--~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~  132 (423)
T 3qs7_E           60 VDVSASITLQVLVDAPGNISCLWVFKHSSLN-C----QPHFDL--QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTIL  132 (423)
T ss_dssp             ECSSCCEEEEEECSCCSSCEEEEEETTEEEC-C----CCBC-------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEE
T ss_pred             EecCCcEEEEEEEEcCCCCeEEEEECCCccC-c----cceecc--ccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEE
Confidence            3456778888999999999999998874311 1    111100  012246799999999999999999965321     


Q ss_pred             -----C--CC-----C--CCCCcEEEEEEeE---------EecCCc------------EEEEc-ccCCCCCeeeEEEEec
Q psy534           83 -----S--PN-----S--HKNGTWFHLDVHG---------VFNDGT------------ELRIS-NIRSQDIGDYTCLATH  126 (145)
Q Consensus        83 -----~--~~-----~--~~~g~~~~l~c~~---------~~~~~~------------~L~i~-~v~~~d~G~Y~C~a~n  126 (145)
                           .  +.     +  ...+..+.|.|..         +...+.            .+... .+..+|+|.|+|.|.|
T Consensus       133 ~~l~V~~~p~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N  212 (423)
T 3qs7_E          133 FTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARN  212 (423)
T ss_dssp             EEEEEC-----CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEEC
T ss_pred             EEEEEecCccccccCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccccccccccceEEecccCeEEEEEEEc
Confidence                 1  11     0  1235666788972         111110            11111 2257899999999999


Q ss_pred             CCC
Q psy534          127 VLY  129 (145)
Q Consensus       127 ~~g  129 (145)
                      ..|
T Consensus       213 ~~G  215 (423)
T 3qs7_E          213 ELG  215 (423)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            998

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.14  E-value=2.9e-10  Score=81.44  Aligned_cols=105  Identities=17%  Similarity=0.100  Sum_probs=67.6

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCC-CCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec-----
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSY-PTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN-----   81 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~-~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-----   81 (145)
                      ...+.++.+.|-+. .|.|.+.|++.+ ...+...+..           ..+.+     ..+|+|.|+|.+.+..     
T Consensus       107 v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~~~-----------~~~~~-----~~~d~G~Y~C~a~n~~~~~~s  169 (289)
T 3mjg_X          107 LTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPYDH-----------QRGFS-----GIFEDRSYICKTTIGDREVDS  169 (289)
T ss_dssp             ESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCEET-----------TTEEE-----ECCCSSEEEEEEEETTEEEEC
T ss_pred             eecCCeEEEEeEcC-CCCceEEEEeCCCCCccceeecC-----------CcCee-----eeccCcEEEEEEEeCCceeee
Confidence            34566777788877 667778887764 2211111111           11111     3679999999996421     


Q ss_pred             ------C----CCC--------CCCCCcEEEEEEeE---------Ee----------------c------CCcEEEEccc
Q psy534           82 ------R----SPN--------SHKNGTWFHLDVHG---------VF----------------N------DGTELRISNI  112 (145)
Q Consensus        82 ------~----~~~--------~~~~g~~~~l~c~~---------~~----------------~------~~~~L~i~~v  112 (145)
                            +    ++.        ....|+.+.|.|..         +.                .      ....|.|.++
T Consensus       170 ~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v  249 (289)
T 3mjg_X          170 DAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSA  249 (289)
T ss_dssp             CCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSC
T ss_pred             eeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEccc
Confidence                  0    111        12359999999982         11                0      1147999999


Q ss_pred             CCCCCeeeEEEEecCCC
Q psy534          113 RSQDIGDYTCLATHVLY  129 (145)
Q Consensus       113 ~~~d~G~Y~C~a~n~~g  129 (145)
                      +.+|+|.|+|.|.|.+|
T Consensus       250 ~~~D~G~Y~C~a~N~~G  266 (289)
T 3mjg_X          250 ELEDSGTYTCNVTESVN  266 (289)
T ss_dssp             CSSCCEEEEEEEEETTT
T ss_pred             ChhhCcEEEEEeecCCC
Confidence            99999999999999999

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.13  E-value=7.7e-10  Score=82.26  Aligned_cols=117  Identities=10%  Similarity=0.050  Sum_probs=79.8

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec-------
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN-------   81 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-------   81 (145)
                      ..+.++.+.|.+.|.|.|.+.|++++.. +......++.+..+   ....+|.|.+++.+|+|.|.|.+.+..       
T Consensus       113 ~~g~~~~l~C~~~g~p~~~i~W~~~g~~-l~~~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~  188 (389)
T 2jll_A          113 WEGNPINISCDVKSNPPASIHWRRDKLV-LPAKNTTNLKTYST---GRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEY  188 (389)
T ss_dssp             CTTCCEEEEECEEEESCCEEEEEETTEE-SSCTTCTTEEEEEC---SSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEE
T ss_pred             ccCCEEEEEEEEEecCCCeEEEEECCcc-CCcccCceEEEecc---CCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEE
Confidence            3466788899999999999999999753 22222234444321   336789999999999999999996532       


Q ss_pred             -----CCCCCC-------CCCcEEEEEEeE-------------------------Ee---cCCcEEEEcccCCCCCeeeE
Q psy534           82 -----RSPNSH-------KNGTWFHLDVHG-------------------------VF---NDGTELRISNIRSQDIGDYT  121 (145)
Q Consensus        82 -----~~~~~~-------~~g~~~~l~c~~-------------------------~~---~~~~~L~i~~v~~~d~G~Y~  121 (145)
                           ..|...       .....+.|.|..                         ..   .....+.|.++...+.+.|+
T Consensus       189 ~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~  268 (389)
T 2jll_A          189 ILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIR  268 (389)
T ss_dssp             EEEECCCCCCCEEEEEEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCCEEEECSTTCSEEEECSCCTTCEEEEE
T ss_pred             EEEecCCCCCCcceEEeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcccEEeeccCCcceEEECCccCCCEEEEE
Confidence                 011111       113445555530                         00   12247999999999999999


Q ss_pred             EEEecCCC
Q psy534          122 CLATHVLY  129 (145)
Q Consensus       122 C~a~n~~g  129 (145)
                      |.|.|..|
T Consensus       269 v~A~N~~G  276 (389)
T 2jll_A          269 VAAVNGKG  276 (389)
T ss_dssp             EEEEESSC
T ss_pred             EEEEcCCc
Confidence            99999988

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.13  E-value=3.3e-10  Score=79.25  Aligned_cols=88  Identities=16%  Similarity=0.225  Sum_probs=59.2

Q ss_pred             ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe---------c---------C------CC--------CCC
Q psy534           40 EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL---------N---------R------SP--------NSH   87 (145)
Q Consensus        40 ~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~---------~---------~------~~--------~~~   87 (145)
                      ..+++|+.+..+ ...++.+|.|.+++.+|+|.|+|.+.+.         .         +      .|        ...
T Consensus        66 ~~~~~R~~~~~~-~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~  144 (232)
T 3qhz_H           66 SSLKTRLTISKD-TSKSQVVLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKS  144 (232)
T ss_dssp             TTTTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC----
T ss_pred             ccccCceEEEec-cCCCEEEEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccc
Confidence            446678887543 2345788999999999999999999732         0         0      01        011


Q ss_pred             CCCcEEEEEEeE-----------Ee---------------c-CC-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534           88 KNGTWFHLDVHG-----------VF---------------N-DG-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus        88 ~~g~~~~l~c~~-----------~~---------------~-~~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|..+.|.|..           +.               . ++     ..|.|......| |.|+|.|+|..+
T Consensus       145 ~~g~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~  217 (232)
T 3qhz_H          145 TSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  217 (232)
T ss_dssp             ---CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGG
T ss_pred             cCCCcEEEEEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCC
Confidence            347899999981           00               0 11     257788887788 999999999875

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.13  E-value=1.1e-10  Score=81.67  Aligned_cols=120  Identities=19%  Similarity=0.262  Sum_probs=76.6

Q ss_pred             hhhccceeeEEeecCC--CccEEEEecCCC---C-------------cccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDE--DIPVYIWYDSYP---T-------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~--p~p~~~w~k~~~---~-------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|.+.+.  +...+.||+...   .             .....+++|+.+..+ ....+.+|.|.+++.+|
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~v~~~D   90 (226)
T 3mlr_H           12 KQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVD-KSISTAYLQWTTLQASD   90 (226)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEE-GGGTEEEEEESSCCGGG
T ss_pred             EecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEec-CCCCEEEEEECCCCccc
Confidence            4456666666766542  234566765321   0             112346788887532 12347889999999999


Q ss_pred             CEEEEEEEEEec-------------------C------CCC--------CCCCCcEEEEEEeEE----------e-----
Q psy534           70 QGWYECKVVFLN-------------------R------SPN--------SHKNGTWFHLDVHGV----------F-----  101 (145)
Q Consensus        70 ~G~Y~C~~~~~~-------------------~------~~~--------~~~~g~~~~l~c~~~----------~-----  101 (145)
                      +|.|+|.+....                   +      +|.        ....|..+.|.|...          .     
T Consensus        91 sG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W~~~~~  170 (226)
T 3mlr_H           91 TGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL  170 (226)
T ss_dssp             CEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred             CEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEECCccc
Confidence            999999984320                   0      110        123588999999810          0     


Q ss_pred             ------------cCC-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          102 ------------NDG-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       102 ------------~~~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                                  .++     ..|.|.....+| |.|+|.|+|..+
T Consensus       171 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~  214 (226)
T 3mlr_H          171 TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  214 (226)
T ss_dssp             CTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGG
T ss_pred             cCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCC
Confidence                        011     157888888888 999999999876

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.12  E-value=6.3e-11  Score=84.84  Aligned_cols=107  Identities=11%  Similarity=0.005  Sum_probs=73.9

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec------
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN------   81 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~------   81 (145)
                      ...+.++.+.|-+.|.    +.|+++...        +..+..   .....+|.|.+++.+|+|.|+|.+.+..      
T Consensus        16 v~~G~~v~L~C~~~~~----v~W~~~~~~--------~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~   80 (292)
T 4dkd_C           16 VKPGATVTLRCVGNGS----VEWDGPPSP--------HWTLYS---DGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAA   80 (292)
T ss_dssp             ECTTCCEEEEEECSSC----CCBCCCCCS--------SCEECC---BTTEEEEEESSCCGGGCSCEEECCCC----CCEE
T ss_pred             EcCCCcEEEEEcCCCc----eEEccCCCC--------ceEEec---cCceEEEEEcccccccCEEEEEEEccCCCCcceE
Confidence            3466788888988775    889966532        111111   1236799999999999999999985421      


Q ss_pred             ----C--CCCC---------CCCCcEEEEEEeE----------E---------------ecCCcEEEEcccCCCCCeeeE
Q psy534           82 ----R--SPNS---------HKNGTWFHLDVHG----------V---------------FNDGTELRISNIRSQDIGDYT  121 (145)
Q Consensus        82 ----~--~~~~---------~~~g~~~~l~c~~----------~---------------~~~~~~L~i~~v~~~d~G~Y~  121 (145)
                          +  ++..         ...|+.+.|.|..          +               ......|.|.+++.+|+|.|+
T Consensus        81 ~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  160 (292)
T 4dkd_C           81 IHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQ  160 (292)
T ss_dssp             ECCEECCSSCCEEESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCCCCSSCCEECCSSSCCEETTCCGGGCSEEE
T ss_pred             EEEEEcCccccccccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCccccCCcccccCCceEEECCCCHHHCeEEE
Confidence                0  1111         2348899999971          0               011235999999999999999


Q ss_pred             EEEecCCC
Q psy534          122 CLATHVLY  129 (145)
Q Consensus       122 C~a~n~~g  129 (145)
                      |.|.|..+
T Consensus       161 C~a~n~~~  168 (292)
T 4dkd_C          161 CSALMGGR  168 (292)
T ss_dssp             EEECSTTS
T ss_pred             EEEEeCCC
Confidence            99998866

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.12  E-value=2e-10  Score=81.98  Aligned_cols=69  Identities=19%  Similarity=0.267  Sum_probs=46.5

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCC--------------cccccccc-eEEEecCCCCCCeeeEEEcccCCCCCEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPT--------------HEAEEYKG-RISRVDKESPFGMASLNLTKIRESDQGW   72 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~--------------~~~~~~~~-R~~~~~~~~~~~~~sL~I~~v~~~D~G~   72 (145)
                      +..+..+.+-|-+.+ +.+.+.|||....              .....+.+ |+.+...  ..++.+|.|.+++.+|+|.
T Consensus        39 v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~sL~I~~v~~~D~G~  115 (270)
T 3qib_D           39 KGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECP--SNSPCSLEIQSSEAGDSAL  115 (270)
T ss_dssp             EETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECC--TTSCEEEEESSCCGGGCEE
T ss_pred             EcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeC--CCcEEEEEECCCCHhHCeE
Confidence            345667777887655 6678899873210              01112223 7766431  2458899999999999999


Q ss_pred             EEEEEEE
Q psy534           73 YECKVVF   79 (145)
Q Consensus        73 Y~C~~~~   79 (145)
                      |+|.+.+
T Consensus       116 Y~C~~~~  122 (270)
T 3qib_D          116 YLCASSL  122 (270)
T ss_dssp             EEEEEES
T ss_pred             EEEEEec
Confidence            9999973

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.11  E-value=1.4e-09  Score=83.65  Aligned_cols=122  Identities=17%  Similarity=0.195  Sum_probs=81.7

Q ss_pred             HhhhccceeeEEeecCCC--ccEEEEecCCC---Cc-------------ccccccceEEEecCCCCCCeeeEEEcccCCC
Q psy534            7 VKSIFQMLSVGDFADDED--IPVYIWYDSYP---TH-------------EAEEYKGRISRVDKESPFGMASLNLTKIRES   68 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p--~p~~~w~k~~~---~~-------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~   68 (145)
                      .+..+..+.+-|.+.+.+  .+.+.||++..   ..             ....+.+|+.+..+ ...++++|.|.+++.+
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~~   90 (475)
T 1iga_A           12 VKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRD-TSATTAYMGLSSLRPE   90 (475)
T ss_pred             EEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEc-CCCCeEEEEECCCChh
Confidence            355677888889887654  66789988631   10             01235678876532 2234689999999999


Q ss_pred             CCEEEEEEEEEec----------------CC------CC-------CCCCCcEEEEEEeEE---------e---cC----
Q psy534           69 DQGWYECKVVFLN----------------RS------PN-------SHKNGTWFHLDVHGV---------F---ND----  103 (145)
Q Consensus        69 D~G~Y~C~~~~~~----------------~~------~~-------~~~~g~~~~l~c~~~---------~---~~----  103 (145)
                      |+|.|+|.+.+..                +.      |.       ....|..+.|.|...         +   .+    
T Consensus        91 D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~  170 (475)
T 1iga_A           91 DTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQGV  170 (475)
T ss_pred             hCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCccccCCCCeEEEEEEEeeecCCCceEEEEcCCCccc
Confidence            9999999996531                00      10       013588999999721         0   00    


Q ss_pred             -------------C-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 -------------G-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 -------------~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                                   +     ..|.|..+..+|+|.|+|.|.|..+
T Consensus       171 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  214 (475)
T 1iga_A          171 TARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTN  214 (475)
T ss_pred             ceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCC
Confidence                         1     1356667777899999999999987

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.11  E-value=6.5e-10  Score=79.91  Aligned_cols=70  Identities=16%  Similarity=0.250  Sum_probs=52.6

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC---C-------------cccccccceEEEecCCCCCCeeeEEEcccCCCCCE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP---T-------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQG   71 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~-------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G   71 (145)
                      +..+..+.+-|-+.+.+.+.+.||++..   .             .....+.+|+.+..+  ..++.+|.|.+++.+|+|
T Consensus        36 v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~sL~I~~v~~~D~G  113 (279)
T 2wbj_D           36 SKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA--SLTLSTLTVTSAHPEDSS  113 (279)
T ss_dssp             EETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEEC--SSSEEEEEESSCCGGGCE
T ss_pred             ecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeC--CCCEEEEEEccCCccCCE
Confidence            4566778888998888889999998641   1             011235678877542  245789999999999999


Q ss_pred             EEEEEEEE
Q psy534           72 WYECKVVF   79 (145)
Q Consensus        72 ~Y~C~~~~   79 (145)
                      .|+|.+.+
T Consensus       114 ~Y~C~~~~  121 (279)
T 2wbj_D          114 FYICSARD  121 (279)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEcc
Confidence            99999987

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.10  E-value=1.7e-09  Score=76.18  Aligned_cols=73  Identities=12%  Similarity=0.208  Sum_probs=51.3

Q ss_pred             HhhhccceeeEEeecCC--CccEEEEecCCC---Cc-c-----------ccc-ccceEEEecCCCCCCeeeEEEcccCCC
Q psy534            7 VKSIFQMLSVGDFADDE--DIPVYIWYDSYP---TH-E-----------AEE-YKGRISRVDKESPFGMASLNLTKIRES   68 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~--p~p~~~w~k~~~---~~-~-----------~~~-~~~R~~~~~~~~~~~~~sL~I~~v~~~   68 (145)
                      .+..+..+.+-|.+.+.  +.+.+.||++..   .. +           ... +.+|+.+..+ ...++.+|.|.+++.+
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~~   90 (242)
T 1hxm_B           12 TKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRI-PETSTSTLTIHNVEKQ   90 (242)
T ss_dssp             EEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEE-TTTTEEEEEECSCCGG
T ss_pred             EecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEec-CCCcEEEEEECCCCcc
Confidence            34567788888988865  667899988531   10 0           112 5678876532 1235789999999999


Q ss_pred             CCEEEEEEEEEe
Q psy534           69 DQGWYECKVVFL   80 (145)
Q Consensus        69 D~G~Y~C~~~~~   80 (145)
                      |+|.|+|.+.+.
T Consensus        91 D~G~Y~C~~~~~  102 (242)
T 1hxm_B           91 DIATYYCALWEA  102 (242)
T ss_dssp             GCEEEEEEEEEE
T ss_pred             cCEEEEEeeecC
Confidence            999999999753

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.10  E-value=6.1e-11  Score=84.96  Aligned_cols=71  Identities=18%  Similarity=0.215  Sum_probs=51.1

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC---Cc-------------ccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP---TH-------------EAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~---~~-------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|.+.+.+  .+.+.||+...   ..             ..+.+.+|+.+..+ ...++.+|.|.+++.+|
T Consensus        12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~v~~~D   90 (257)
T 3bn9_D           12 VKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRD-NSKNTLYLQMSSLRAED   90 (257)
T ss_dssp             ECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEE-TTTTEEEEEEESCCGGG
T ss_pred             EcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEec-CCCCEEEEEECCCChhh
Confidence            45677888889888765  57788987641   10             11235678876532 23457899999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|+|.+.+
T Consensus        91 sG~Y~C~~~~  100 (257)
T 3bn9_D           91 TAVYYCARPY  100 (257)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEEEec
Confidence            9999999965

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.10  E-value=2.4e-10  Score=81.24  Aligned_cols=71  Identities=18%  Similarity=0.140  Sum_probs=46.1

Q ss_pred             hhhccceeeEEeecCC--CccEEEEecCCC----------------CcccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDE--DIPVYIWYDSYP----------------THEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~--p~p~~~w~k~~~----------------~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|.+.+.  +...+.||+...                ......+++|+.+..+ ....+.+|.|.+++.+|
T Consensus        11 v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~v~~~D   89 (248)
T 3u2s_H           11 VQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRD-NSKDTLYLQMNSLRVED   89 (248)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEE-GGGTEEEEEECSCCGGG
T ss_pred             EeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEec-CCCCEEEEEECCCCHHH
Confidence            3456666677766542  344566765421                0122346788887532 12347889999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|+|.+.+
T Consensus        90 sG~Y~C~~~~   99 (248)
T 3u2s_H           90 TATYFCVREA   99 (248)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEeC
Confidence            9999999874

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.10  E-value=4.6e-10  Score=79.80  Aligned_cols=120  Identities=18%  Similarity=0.183  Sum_probs=75.8

Q ss_pred             hhhccceeeEEeecCC--CccEEEEecCCC---C-------------cccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDE--DIPVYIWYDSYP---T-------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~--p~p~~~w~k~~~---~-------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|-+.+.  ....+.||+...   .             .....+++|+.+..+ ...++.+|.|.+++.+|
T Consensus        35 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~v~~~D  113 (256)
T 3sob_H           35 VQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISAD-TSKNTAYLQMNSLRAED  113 (256)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEE-GGGTEEEEEECSCCGGG
T ss_pred             EcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEe-CCCCEEEEEECCCCccc
Confidence            3456666677766542  234567775321   0             112346788887543 23457789999999999


Q ss_pred             CEEEEEEEEEec---------------------C------CC--------CCCCCCcEEEEEEeEE--------e-----
Q psy534           70 QGWYECKVVFLN---------------------R------SP--------NSHKNGTWFHLDVHGV--------F-----  101 (145)
Q Consensus        70 ~G~Y~C~~~~~~---------------------~------~~--------~~~~~g~~~~l~c~~~--------~-----  101 (145)
                      +|.|+|.+....                     +      +|        .....|..+.|.|...        +     
T Consensus       114 sG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~W~~~  193 (256)
T 3sob_H          114 TAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSG  193 (256)
T ss_dssp             CEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             CEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEEECCc
Confidence            999999986310                     0      11        0123588999999710        0     


Q ss_pred             --------------cCC-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          102 --------------NDG-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       102 --------------~~~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                                    .++     ..|.|.....+| |.|+|.|+|..+
T Consensus       194 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~  239 (256)
T 3sob_H          194 ALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  239 (256)
T ss_dssp             TBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGG
T ss_pred             ccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCC
Confidence                          011     257788888888 999999999875

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.09  E-value=8.7e-10  Score=83.73  Aligned_cols=112  Identities=10%  Similarity=0.032  Sum_probs=77.0

Q ss_pred             hhccceeeEEeecCCCcc---EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC---
Q psy534            9 SIFQMLSVGDFADDEDIP---VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR---   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p---~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~---   82 (145)
                      ..+.++.+.|-+.|.|.+   .+.|||++.......   +.      ....+++|.|.+++.+|+|.|+|++.+...   
T Consensus        99 ~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~---~~------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  169 (450)
T 1z7z_I           99 PVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREP---AV------GEPAEVTTTVLVRRDHHGANFSCRTELDLRPQG  169 (450)
T ss_dssp             CTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE---CC------TTTEEEEEEEECCSSCSSCEEEEEEEEECGGGT
T ss_pred             eeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeeccc---cc------ccccceEEEEEeeccccCceEEEEEEcccCCCC
Confidence            456778889999998877   999999975421111   00      113367999999999999999999986510   


Q ss_pred             -----------------C----C-----CCCCCCcEEEEEEeEEec------------C-----------CcEEEEc---
Q psy534           83 -----------------S----P-----NSHKNGTWFHLDVHGVFN------------D-----------GTELRIS---  110 (145)
Q Consensus        83 -----------------~----~-----~~~~~g~~~~l~c~~~~~------------~-----------~~~L~i~---  110 (145)
                                       .    |     .....|+.+.|.|.....            +           +..+.+.   
T Consensus       170 ~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  249 (450)
T 1z7z_I          170 LELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASV  249 (450)
T ss_dssp             SCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCCEEEEETTEEEEEEEE
T ss_pred             ceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCceEEecCCceeEEEEE
Confidence                             0    1     112348999999983210            1           1122222   


Q ss_pred             ccCCCCCe--eeEEEEecCCC
Q psy534          111 NIRSQDIG--DYTCLATHVLY  129 (145)
Q Consensus       111 ~v~~~d~G--~Y~C~a~n~~g  129 (145)
                      +++.+|+|  .|+|.|.|..|
T Consensus       250 ~v~~~d~G~~~Y~C~a~n~~g  270 (450)
T 1z7z_I          250 SVTAEDEGTQRLTCAVILGNQ  270 (450)
T ss_dssp             ECCGGGCEEEEEEEEEEETTE
T ss_pred             EeEhhhCCcEEEEEEEccCCc
Confidence            66899999  99999999987

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.09  E-value=1.5e-10  Score=72.40  Aligned_cols=66  Identities=21%  Similarity=0.150  Sum_probs=49.9

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.++.+.|-+.|.|.|.+.|+|++... ..  ..|+.+..+   ....+|.|.+++.+|+|.|.|.|.|.
T Consensus        26 ~~G~~~~l~C~~~G~P~p~v~W~k~g~~l-~~--~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~   91 (107)
T 3knb_B           26 VSGAEAELKCVVLGEPPPVVVWEKGGQQL-AA--SERLSFPAD---GAEHGLLLTAALPTDAGVYVCRARNA   91 (107)
T ss_dssp             ETTSCEEEEEEEEEESCCEEEEEETTEEC-CC--CSSEECCEE---TTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             eCCCcEEEEEEEEEecCCEEEEEECcccc-cc--eeeEEEeec---CceEEEEEecCChhhCEEEEEEEEEC
Confidence            45677888899999999999999998542 21  234444221   23678999999999999999999863

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.09  E-value=1.4e-10  Score=80.04  Aligned_cols=71  Identities=13%  Similarity=0.076  Sum_probs=45.4

Q ss_pred             hhhccceeeEEeecCCC----ccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDED----IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p----~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+..+.+.|.+.|.+    .+.+.|++++..........+..+ .+..-....+|.|.+++.+|+|.|+|.+.+
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~-~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~   89 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQ-FNSTFRSVSELPIMHQDWLNGKEFKCRVNS   89 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEE-TTTEEEEEEEEECCHHHHHTTCCEEEEEEC
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCc-CCCcEEEEEEEEEehhHcCCCCEEEEEEEc
Confidence            56788999999998763    348999998843211000000000 000001256799999999999999999964

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.09  E-value=7.9e-11  Score=81.91  Aligned_cols=72  Identities=13%  Similarity=-0.013  Sum_probs=46.8

Q ss_pred             hhhccceeeEEeecCC---C-ccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDE---D-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~---p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+..+.+.|.+.|.   | .+.+.|+|++.... ...........+..-....+|.|.+++.+|+|.|+|++.+.
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~-~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~   98 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVH-TAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNK   98 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEEC-CCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEET
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEECCcccc-CcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECC
Confidence            5678889999999876   3 37899999984321 11111111100000012568999999999999999999653

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.09  E-value=2.6e-10  Score=81.86  Aligned_cols=104  Identities=13%  Similarity=0.017  Sum_probs=73.3

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe-------c
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL-------N   81 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~-------~   81 (145)
                      ..+.++.+.|-+.|    .+.|++++...       +...      ....+|.|.+++.+|+|.|+|.+.+.       .
T Consensus        25 ~~G~~v~l~C~~~~----~i~W~~~~~~~-------~~~~------~~~~~L~i~~~~~~d~G~Y~C~~~ng~~~~~~l~   87 (290)
T 2o26_X           25 EAGDTLSLTCIDPD----FVRWTFKTYFN-------EMVE------NKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVF   87 (290)
T ss_dssp             ETTSCEEEEEECTT----EEEEEEECSSS-------CEEE------ECSSEEEETTCCGGGCEEEEEEESSSCEEEEEEE
T ss_pred             cCCCcEEEEECCCC----cEEEecCCcce-------eeec------CCCceEEEeccCHHhCeEEEEEeeCCccEEEEEE
Confidence            44667777887777    79999998642       1111      11488999999999999999998431       0


Q ss_pred             --CCCCC--------CCCCcEEEEEEeE---------E-e--------------cCCcEEEEcccCCCCCe-eeEEEEec
Q psy534           82 --RSPNS--------HKNGTWFHLDVHG---------V-F--------------NDGTELRISNIRSQDIG-DYTCLATH  126 (145)
Q Consensus        82 --~~~~~--------~~~g~~~~l~c~~---------~-~--------------~~~~~L~i~~v~~~d~G-~Y~C~a~n  126 (145)
                        .++..        ...|+.+.|.|..         + .              .....|.|.+++.+|+| .|+|.|.|
T Consensus        88 V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n  167 (290)
T 2o26_X           88 VRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQR  167 (290)
T ss_dssp             EECSSCCBCCCCCEEEETTSCEEECCCBSCCSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEE
T ss_pred             EeCCCcccccccceEEecCCeEEEeCcCCCCCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEE
Confidence              01111        2248888888871         1 1              12247999999999999 99999999


Q ss_pred             CCC
Q psy534          127 VLY  129 (145)
Q Consensus       127 ~~g  129 (145)
                      ..+
T Consensus       168 ~~~  170 (290)
T 2o26_X          168 DGT  170 (290)
T ss_dssp             TTE
T ss_pred             CCc
Confidence            855

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.07  E-value=8.6e-10  Score=69.05  Aligned_cols=67  Identities=9%  Similarity=-0.002  Sum_probs=51.2

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+..+.+.|.+.|.|.|.+.|+|++....   ...|+.+...   ....+|.|.+++.+|+|.|+|.+.+.
T Consensus        19 v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~---~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~   85 (114)
T 2cqv_A           19 VRAGESVELFGKVTGTQPITCTWMKFRKQIQ---ESEHMKVENS---ENGSKLTILAARQEHCGCYTLLVENK   85 (114)
T ss_dssp             EETTCCEEEEEEEESSSSCEEEEEESSSBCC---CSSSEEEEEC---SSEEEEEETTCCTTTCEEEEEEEECS
T ss_pred             EeCCCeEEEEEEEEcCCCCEEEEEECCEECc---CCCCEEEEEc---CCEEEEEECCCChhcCEEEEEEEEEC
Confidence            3557788899999999999999999985422   1234444321   34788999999999999999999753

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.05  E-value=1e-09  Score=70.75  Aligned_cols=67  Identities=10%  Similarity=0.086  Sum_probs=45.8

Q ss_pred             ceeeEEeecCCCccEEEEecCCCCcccccccceEEEec--CCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           13 MLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVD--KESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        13 ~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~--~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+.+-|-+.|+|.|.+.|+|++........ .......  .+.....++|.|.+++.+|+|.|+|.|.|.
T Consensus        17 ~~~l~c~v~G~P~P~I~W~knG~~l~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~   85 (126)
T 1he7_A           17 HWCIPFSVDGQPAPSLRWLFNGSVLNETSF-IFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP   85 (126)
T ss_dssp             EEEEEEEECCSSCCEEEEEETTEECCCCSS-EEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEET
T ss_pred             cEEEEEEEeeeCCCeEEEEECCEECCCCCc-eeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEEC
Confidence            455667788999999999999854322111 1112211  011123688999999999999999999763

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.05  E-value=3e-10  Score=91.35  Aligned_cols=121  Identities=19%  Similarity=0.258  Sum_probs=43.1

Q ss_pred             hhccceeeEEeecC--CCccEEEEecCCCCcccccccc-eEEEe-cCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC--
Q psy534            9 SIFQMLSVGDFADD--EDIPVYIWYDSYPTHEAEEYKG-RISRV-DKESPFGMASLNLTKIRESDQGWYECKVVFLNR--   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g--~p~p~~~w~k~~~~~~~~~~~~-R~~~~-~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~--   82 (145)
                      ..+.++.+.|-+.+  .+.+.+.|++++.......... ..... .........+|.|.+++.+|+|.|+|.+.+...  
T Consensus       237 ~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~  316 (772)
T 3v2a_R          237 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK  316 (772)
T ss_dssp             ETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEE
T ss_pred             ecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcce
Confidence            45677888898886  5567899999875421111110 00000 000112367899999999999999999964320  


Q ss_pred             ----------CC-----------CCCCCCcEEEEEEeE---------Ee------------cCCcEEEEcccCCCCCeee
Q psy534           83 ----------SP-----------NSHKNGTWFHLDVHG---------VF------------NDGTELRISNIRSQDIGDY  120 (145)
Q Consensus        83 ----------~~-----------~~~~~g~~~~l~c~~---------~~------------~~~~~L~i~~v~~~d~G~Y  120 (145)
                                +|           .....|+.+.|.|..         +.            .....|.|.+++.+|+|.|
T Consensus       317 ~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~L~i~~v~~~d~G~Y  396 (772)
T 3v2a_R          317 KNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNY  396 (772)
T ss_dssp             EEEEEEEEECCCC-------------------------------------------------------------------
T ss_pred             eEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceEccceeEEEecCChhcCceE
Confidence                      11           112458899999971         00            1125799999999999999


Q ss_pred             EEEEecCCC
Q psy534          121 TCLATHVLY  129 (145)
Q Consensus       121 ~C~a~n~~g  129 (145)
                      +|.|.|..|
T Consensus       397 ~C~a~n~~g  405 (772)
T 3v2a_R          397 TVILTNPIS  405 (772)
T ss_dssp             ---------
T ss_pred             EEEEEECCc
Confidence            999999887

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.03  E-value=8e-10  Score=69.65  Aligned_cols=34  Identities=32%  Similarity=0.442  Sum_probs=30.2

Q ss_pred             ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           40 EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        40 ~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      +.+++|..+.      .+++|.|++|+++|+|.|+|++.+
T Consensus        60 ~~~~gR~~~~------~ngSL~I~nvt~~D~G~Ytc~v~~   93 (111)
T 2qsq_A           60 PAYSGREIIY------PNASLLIQNIIQNDAGFYTLHVIK   93 (111)
T ss_dssp             TTCCSCEEEC------TTSCEEECSCCGGGCEEEEEEEEE
T ss_pred             cccCCcEEEe------cCCcEEEccCcccCCeEEEEEEEe
Confidence            4588999984      489999999999999999999975

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.03  E-value=4e-10  Score=69.74  Aligned_cols=70  Identities=10%  Similarity=-0.058  Sum_probs=46.7

Q ss_pred             hccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ....+.+.|-+.|.|.|.+.|+|++... ...-..+..+.........++|.|.+++.+|+|.|.|.|.|.
T Consensus        15 ~~~~~~~~c~v~G~P~P~i~W~k~g~~l-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~   84 (103)
T 1wwb_X           15 SDHHWCIPFTVKGNPKPALQWFYNGAIL-NESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNE   84 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEE-CCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECS
T ss_pred             ECcEEEEEEEEEEeCCCEEEEEECCEEC-CCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeC
Confidence            3445667788899999999999998542 222111111111111123566999999999999999999753

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.03  E-value=1.5e-09  Score=65.49  Aligned_cols=65  Identities=15%  Similarity=0.028  Sum_probs=49.4

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCC--CCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSY--PTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~--~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+..+.+.|-+.|.|.|.+.|++++  .. +....  +....     ....+|.|.+++.+|+|.|.|.|.+.
T Consensus        14 v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~-~~~~~--~~~~~-----~~~~~L~i~~~~~~D~G~Y~C~a~N~   80 (93)
T 1wit_A           14 IKAGFTHNLEVDFIGAPDPTATWTVGDSGAA-LAPEL--LVDAK-----SSTTSIFFPSAKRADSGNYKLKVKNE   80 (93)
T ss_dssp             ECTTBCCEEEEEEECCSSCEEEEECSTTTCB-CSTTS--EEEEE-----TTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred             EeCCCEEEEEEEEEEcCCCEEEEEECCCCcc-cCCcE--EEEec-----CCEEEEEECCCChhcCEEEEEEEEcC
Confidence            345677888999999999999999998  54 22221  22221     34688999999999999999999863

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.02  E-value=8.7e-10  Score=68.55  Aligned_cols=72  Identities=15%  Similarity=0.256  Sum_probs=48.7

Q ss_pred             hhhccceeeEEeecCCCc---cEEEEecCCCCcccccccceEEEec---CCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDI---PVYIWYDSYPTHEAEEYKGRISRVD---KESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~---p~~~w~k~~~~~~~~~~~~R~~~~~---~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+..+.+.|.+.|.|.   |.+.|||++..........|+.+..   ........+|.|.+++.+|+|.|+|.+.+
T Consensus        16 v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   93 (108)
T 3cx2_A           16 VTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVST   93 (108)
T ss_dssp             EETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEEEEEEec
Confidence            456778899999999998   9999999762211111122333321   00112367899999999999999999975

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.02  E-value=8.6e-10  Score=67.08  Aligned_cols=68  Identities=13%  Similarity=0.024  Sum_probs=49.6

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|.+.|.|.|.+.|++++.....   ..+..+...  ..+..+|.|.+++.+|+|.|.|.+.+.
T Consensus        17 v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~---~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~   84 (99)
T 1g1c_A           17 VGQGSDAHFRVRVVGKPDPECEWYKNGVKIER---SDRIYWYWP--EDNVCELVIRDVTGEDSASIMVKAINI   84 (99)
T ss_dssp             EETTSCEEEEEEEEEESCCEEEEEETTEECCC---CSSEEEEEE--ETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EcCCCcEEEEEEEEEeCCCEEEEEECCEECCC---CCCEEEEEc--CCCEEEEEECCCCcCCCEEEEEEEEEC
Confidence            35567888999999999999999999854221   122222110  133678999999999999999999763

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.01  E-value=3.7e-10  Score=68.93  Aligned_cols=68  Identities=19%  Similarity=0.174  Sum_probs=49.5

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|.+.|.|.|.+.|++++..........+....     ...++|.|.+++.+|+|.|.|.+.+.
T Consensus        20 v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~   87 (100)
T 3caf_A           20 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR-----NQHWSLIMESVVPSDKGNYTCVVENE   87 (100)
T ss_dssp             ECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEE-----GGGTEEEECSCCGGGCEEEEEEEEET
T ss_pred             ecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEe-----cCeEEEEEccCCcCCCEEEEEEEEeC
Confidence            346788889999999999999999987542221111122221     23568999999999999999999753

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=99.00  E-value=1.6e-09  Score=69.50  Aligned_cols=72  Identities=21%  Similarity=0.291  Sum_probs=50.5

Q ss_pred             hhhccceeeEEeecCCC---ccEEEEecCCC--------------CcccccccceEEEecCCCCCCeeeEEEcccCCCCC
Q psy534            8 KSIFQMLSVGDFADDED---IPVYIWYDSYP--------------THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQ   70 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p---~p~~~w~k~~~--------------~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   70 (145)
                      +..+..+.+-|.+...+   ...+.|+|.+.              ....+.|.+|+.+..+....++.+|.|.+|+.+|+
T Consensus        17 g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~v~~~D~   96 (125)
T 4gos_A           17 GNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKNVQLTDA   96 (125)
T ss_dssp             EETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESSCCGGGC
T ss_pred             EeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECCCChHHC
Confidence            34566666677664221   23566776532              12345688999987765566789999999999999


Q ss_pred             EEEEEEEEE
Q psy534           71 GWYECKVVF   79 (145)
Q Consensus        71 G~Y~C~~~~   79 (145)
                      |.|+|++.+
T Consensus        97 G~Y~C~v~~  105 (125)
T 4gos_A           97 GTYKCYIIT  105 (125)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            999999974

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=98.99  E-value=8.1e-10  Score=67.20  Aligned_cols=68  Identities=21%  Similarity=0.273  Sum_probs=49.7

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|.+.|.|.|.+.|++++.....  -..+.....+   .+..+|.|.+++.+|+|.|.|.+.+.
T Consensus        17 v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~--~~~~~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~N~   84 (99)
T 1u2h_A           17 VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRP--DQRRFAEEAE---GGLCRLRILAAERGDAGFYTCKAVNE   84 (99)
T ss_dssp             EETTCCEEEEEEEEEESCCEEEEEETTEECCC--BTTEEEEECG---GGEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             ecCCCEEEEEEEEEEcCCCEEEEEECCEECCC--CCCEEEEECC---CCEEEEEEccCCcCCCEEEEEEEEEC
Confidence            34677888999999999999999999854221  1223333221   23458999999999999999999753

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=98.97  E-value=1.2e-09  Score=66.90  Aligned_cols=66  Identities=15%  Similarity=0.149  Sum_probs=49.4

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+..+.+.|.+.|.|.|.+.|+|++... ..  ..|..+...   ....+|.|.+++.+|+|.|.|.+.+.
T Consensus        21 ~~G~~v~l~C~~~g~p~p~i~W~k~~~~~-~~--~~~~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~N~   86 (103)
T 3qp3_A           21 PCGQNTRFILNVQSKPTAEVKWYHNGVEL-QE--SSKIHYTNT---SGVLTLEILDCHTDDSGTYRAVCTNY   86 (103)
T ss_dssp             ETTCCEEEEEEEEEESCCEEEEEETTEEC-CC--CSSEEEEEE---TTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             eCCCeEEEEEEEEecCCCEEEEEECCEEC-CC--CCCEEEEEC---CCEEEEEEcCCCcccCEEEEEEEEeC
Confidence            45677888899999999999999998542 21  123333221   23678999999999999999999763

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.97  E-value=6e-10  Score=84.74  Aligned_cols=71  Identities=11%  Similarity=-0.041  Sum_probs=47.2

Q ss_pred             hhhccceeeEEeecCCC----ccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDED----IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p----~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.++.+.|-+.|.+    .+.+.|++++.. +......+.....+......++|.|.+++.+|+|.|.|.|.+
T Consensus       252 ~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~-~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n  326 (444)
T 1igt_B          252 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVE-VHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNN  326 (444)
T ss_dssp             HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEE-CSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEEC
T ss_pred             eecCCCcEEEEEEeecccCCCCeEEEEEECCcc-ccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEc
Confidence            35678889999998763    468999999843 222222221111110011256899999999999999999965

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.97  E-value=1.6e-09  Score=66.03  Aligned_cols=68  Identities=19%  Similarity=0.174  Sum_probs=49.4

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|-+.|.|.|.+.|++++.. +...-..+.....    .+..+|.|.+++.+|+|.|+|.+.+.
T Consensus        17 ~~~G~~~~l~C~~~g~p~p~v~W~~~g~~-~~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~n~   84 (100)
T 2kdg_A           17 IDEGRFCRMDFKVSGLPAPDVSWYLNGRT-VQSDDLHKMIVSE----KGLHSLIFEVVRASDAGAYACVAKNR   84 (100)
T ss_dssp             EETTCCEEEEEECEEESCCEEEEEETTEE-ECCCSSSCEEEET----TTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             ecCCCEEEEEEEEEeeCCCEEEEEECCEE-CcCCCcEEEEEcC----CCeEEEEECCCCcccCEEEEEEEEcC
Confidence            34567888999999999999999998753 2222222222211    23468999999999999999999753

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.97  E-value=5.8e-10  Score=66.76  Aligned_cols=64  Identities=19%  Similarity=0.159  Sum_probs=46.7

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      +..+.++.+.|-..| |.|.+.|||++... .  ...++.+..+   ....+|.|.+++.+|+|.|.|+|.
T Consensus         8 ~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l-~--~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~   71 (84)
T 2lu7_A            8 STPGGDLELVVHLSG-PGGPVRWYKDGERL-A--SQGRVQLEQA---GARQVLRVQGARSGDAGEYLCDAP   71 (84)
T ss_dssp             ECTTSCEEEECCCSC-CSTTCEEEETTEEC-C--CCSSEEEEEC---SSCEEEEESSCSSTTCEEEEEECT
T ss_pred             EecCCCEEEEEEECC-CCcEEEEEECCEEc-c--ccccEEEeec---CCeEEEEecCCCCcccEEEEEEEC
Confidence            345778888887755 88889999998542 2  2234444332   335789999999999999999873

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=98.97  E-value=2.6e-09  Score=68.05  Aligned_cols=42  Identities=26%  Similarity=0.386  Sum_probs=34.9

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.|++|+.+...+...++.+|.|.+++.+|+|.|+|.+..
T Consensus        60 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~t  101 (123)
T 4gjt_B           60 VSPAYEGRVEQPPPPRNPLDGSVLLRNAVQADEGEYECRVST  101 (123)
T ss_dssp             BCGGGTTTEECCCSSCCTTBCCEEEESCCSSSCSEEEEEEEE
T ss_pred             eCccceeEEEEecCCCcCCEEEEEECCCChHHCEEEEEEEEE
Confidence            345678899887665666789999999999999999999863

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=2.7e-09  Score=66.27  Aligned_cols=69  Identities=13%  Similarity=0.023  Sum_probs=50.7

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|.+.|.|.|.+.|++++.....  ...|+.+..+  ..+..+|.|.+++.+|+|.|+|.+.+.
T Consensus        20 v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~--~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~   88 (110)
T 2dm2_A           20 IFEGMPVTFTCRVAGNPKPKIYWFKDGKQISP--KSDHYTIQRD--LDGTCSLHTTASTLDDDGNYTIMAANP   88 (110)
T ss_dssp             EETTCCEEEEEEBCCSSCCEEEEECSSCBCCT--TCSSEEEEEC--TTCEEEEEESSCCTTTCSCCEEEEECT
T ss_pred             EeCCCeEEEEEEEEecCCCEEEEEECCEECCC--CCCeEEEEEC--CCcEEEEEECCCChhhCEEEEEEEEEC
Confidence            34667888999999999999999998754321  1234444321  123458999999999999999999753

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=7.5e-10  Score=67.63  Aligned_cols=64  Identities=20%  Similarity=0.244  Sum_probs=49.2

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+..+.+.|.+.|.|.|.+.|++++....  ....|+.+      ..+++|.|.+++.+|+|.|.|.+.+.
T Consensus        21 ~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~--~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~n~   84 (100)
T 2edj_A           21 AVDGTALLKCKATGDPLPVISWLKEGFTFP--GRDPRATI------QEQGTLQIKNLRISDTGTYTCVATSS   84 (100)
T ss_dssp             ESSSEEEECCEEECSSCCEEEEEESSSEES--SSCSSCEE------CTTCCEEEESCCTTTCCEEEEEEECS
T ss_pred             cCCCcEEEEEEEEEcCCCEEEEEECCEECC--CCCCCEEE------cCCCEEEEccCCcccCEEEEEEEEcC
Confidence            456778888999999999999999875422  12234444      23678999999999999999999864

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=98.96  E-value=1.5e-09  Score=65.91  Aligned_cols=67  Identities=24%  Similarity=0.240  Sum_probs=50.0

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|-+.|.|.|.+.|++++.. +.  ...|+.+..+   ....+|.|.+++.+|+|.|.|.+.+.
T Consensus        18 v~~G~~~~l~C~~~g~p~p~v~W~~~g~~-~~--~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~n~   84 (99)
T 3puc_A           18 VSSDSVAKFAVKATGEPRPTAIWTKDGKA-IT--QGGKYKLSED---KGGFFLEIHKTDTSDSGLYTCTVKNS   84 (99)
T ss_dssp             EESSSCEEEEEEEEEESCCEEEEEETTEE-CC--SSSSEEEEEE---TTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EeCCCcEEEEEEEEecCCCEEEEEECCEE-Cc--CCCCEEEEEe---CCEEEEEECCCCcccCEEEEEEEEeC
Confidence            34567788889999999999999998743 22  2244544321   23568999999999999999999753

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=1.1e-09  Score=69.03  Aligned_cols=65  Identities=15%  Similarity=0.278  Sum_probs=50.0

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+..+.+.|.+.|.|.+.+.|++++.....  ...|+....      +++|.|.+++.+|+|.|+|.+.+.
T Consensus        20 v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~--~~~~~~~~~------~~~L~i~~v~~~D~G~Y~C~a~n~   84 (118)
T 2eo9_A           20 VAVDGTFVLSCVATGSPVPTILWRKDGVLVST--QDSRIKQLE------NGVLQIRYAKLGDTGRYTCIASTP   84 (118)
T ss_dssp             EETTCEEEEECBCCCSSCCEEEEEESSSBCCT--TSTTEEEEE------TTEEEEESCCGGGCCCEEEEEECS
T ss_pred             EcCCCeEEEEEEEEecCCCEEEEEECCEECcC--CCCeEEEcc------CCEEEEccCCcCCCEEEEEEEEcC
Confidence            34567888999999999999999998754221  234454422      568999999999999999999753

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.95  E-value=8.8e-09  Score=78.17  Aligned_cols=112  Identities=13%  Similarity=0.106  Sum_probs=74.9

Q ss_pred             hhccceeeEEeecCC-C--ccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCE--EEEEEEEEecC-
Q psy534            9 SIFQMLSVGDFADDE-D--IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQG--WYECKVVFLNR-   82 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~-p--~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G--~Y~C~~~~~~~-   82 (145)
                      ..+.++.+.|-+.|. |  .+.+.|++++... ..    ++....+   .....+.+ +++.+|+|  .|.|.+.+... 
T Consensus       201 ~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~-~~----~~~~~~~---~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~  271 (450)
T 1z7z_I          201 EVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL-NP----TVTYGND---SFSAKASV-SVTAEDEGTQRLTCAVILGNQS  271 (450)
T ss_dssp             ETTSEEEEEEEEESCTTGGGCEEEEEETTEEC-CC----EEEEETT---EEEEEEEE-ECCGGGCEEEEEEEEEEETTEE
T ss_pred             EeCCcEEEEEEeeCCCCCCceEEEEeCCCEeC-Cc----eEEecCC---ceeEEEEE-EeEhhhCCcEEEEEEEccCCcc
Confidence            456677888999988 7  7899999998542 11    3333211   00111222 78999999  99999965420 


Q ss_pred             -------------CC------CCCCCCcEEEEEEeEE--------------ecCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534           83 -------------SP------NSHKNGTWFHLDVHGV--------------FNDGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus        83 -------------~~------~~~~~g~~~~l~c~~~--------------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                                   +|      .....|+.+.|.|...              ......|.|.+++.+|+|.|+|.|.|..+
T Consensus       272 ~~~~~~l~V~~~~~p~i~~~~~~v~~G~~v~l~C~~~p~p~i~W~g~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  351 (450)
T 1z7z_I          272 QETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVA  351 (450)
T ss_dssp             EEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEEC----------------CCCCCEEEECCGGGTTCEEEEEEEEEET
T ss_pred             EEEEEEEEEecCCCCeEecCCeeEeCCCcEEEEEecCCCCEeEECCEEcCCCCceEEEEEecCcccCCceEEEEEEcCCC
Confidence                         11      1134599999999721              01223689999999999999999997654

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.95  E-value=2.7e-09  Score=68.69  Aligned_cols=72  Identities=14%  Similarity=0.230  Sum_probs=47.5

Q ss_pred             hhhccceeeEEeecCC---CccEEEEecCCCCcccccccceEEEec---CCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDE---DIPVYIWYDSYPTHEAEEYKGRISRVD---KESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~---p~p~~~w~k~~~~~~~~~~~~R~~~~~---~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.++.+.|.+.|.   |.|.+.|||++...+......++.+..   ........+|+|.+++.+|+|.|+|++.+
T Consensus        19 V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cevsn   96 (126)
T 2dav_A           19 VKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTY   96 (126)
T ss_dssp             EETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEEC
T ss_pred             EeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEEEEEEe
Confidence            3467788889998764   899999999752111111012233211   00112368999999999999999999975

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=98.95  E-value=5.8e-10  Score=78.90  Aligned_cols=71  Identities=11%  Similarity=0.030  Sum_probs=46.6

Q ss_pred             hhhccceeeEEeecCC---Ccc-EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDE---DIP-VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~---p~p-~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+..+.+.|.+.|.   |.+ .+.||+++..... ..........+..-....+|.|.+++.+|+|.|+|++.+
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~-~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~  103 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHT-AQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNS  103 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECC-CEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEEC
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccC-cccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEec
Confidence            4567889999999875   776 8999998753211 111000011100001256899999999999999999964

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=98.95  E-value=1.7e-09  Score=65.70  Aligned_cols=66  Identities=20%  Similarity=0.190  Sum_probs=49.4

Q ss_pred             hhhccceeeEEeecCC-CccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDE-DIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~-p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+..+.+.|.+.|. |.|.+.||+++... ..  ..|..+...   .+..+|.|.+++.+|+|.|.|.+.+
T Consensus        13 v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~-~~--~~~~~~~~~---~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (97)
T 2bk8_A           13 GEEGGHVKYVCKIENYDQSTQVTWYFGVRQL-EN--SEKYEITYE---DGVAILYVKDITKLDDGTYRCKVVN   79 (97)
T ss_dssp             ECTTCCEEEEEEEESCCTTCEEEEEETTEEC-CS--SSSEEEEEE---TTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EcCCCcEEEEEEEeccCCCCEEEEEECCEEC-cC--CCCEEEEEc---CCeEEEEEecCChhhCeEEEEEEEC
Confidence            4556788899999997 99999999997532 21  234433211   2356899999999999999999975

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.95  E-value=3.6e-09  Score=74.88  Aligned_cols=68  Identities=15%  Similarity=0.154  Sum_probs=45.8

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC--------------Ccccccccc-eEEEecCCCCCCeeeEEEcccCCCCCE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP--------------THEAEEYKG-RISRVDKESPFGMASLNLTKIRESDQG   71 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~--------------~~~~~~~~~-R~~~~~~~~~~~~~sL~I~~v~~~D~G   71 (145)
                      ++..+..+.+-|.+.+.+.+.+.||+...              ......+.+ |+.+..+   .... |.|.+++.+|+|
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~-L~I~~v~~~DsG   87 (253)
T 3to4_D           12 LVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRV---TDTE-LRLQVANMSQGR   87 (253)
T ss_dssp             EEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECC---SSSC-CEEEEESCSSCE
T ss_pred             EEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeC---CCCe-EEEccCChhhCe
Confidence            34567778888887777777888887321              111122344 7776432   1122 999999999999


Q ss_pred             EEEEEEE
Q psy534           72 WYECKVV   78 (145)
Q Consensus        72 ~Y~C~~~   78 (145)
                      .|+|.+.
T Consensus        88 ~Y~C~~~   94 (253)
T 3to4_D           88 TLYCTSS   94 (253)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999986

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=98.94  E-value=3.6e-09  Score=75.10  Aligned_cols=102  Identities=15%  Similarity=0.036  Sum_probs=68.6

Q ss_pred             hccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-------
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-------   82 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-------   82 (145)
                      .+.++.+.|.+.  |.|.+.|  ++... .  .           ......|.|..+..+|.|.|.|.+.+...       
T Consensus       112 ~G~~v~l~C~~~--p~~~i~W--~g~~~-~--~-----------~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s  173 (265)
T 2oz4_A          112 EGTEVTVKCEAH--PRAKVTL--NGVPA-Q--P-----------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKN  173 (265)
T ss_dssp             TTCEEEEEEECC--TTSEEEE--SSCSS-S--C-----------CSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEE
T ss_pred             CCCcEEEEEEcc--CCCEEEE--CCEEc-c--C-----------CCCcEEEEEccccccCCceEEEEEEcCCCCCccccc
Confidence            356777888777  8899999  44331 1  0           12367789999999999999999964210       


Q ss_pred             ---------C--------CC--CCCCCcEEEEEEeE---------EecCCc----EEEEcccCCCCCeeeEEEEecCCC
Q psy534           83 ---------S--------PN--SHKNGTWFHLDVHG---------VFNDGT----ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus        83 ---------~--------~~--~~~~g~~~~l~c~~---------~~~~~~----~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                               +        +.  ....|+.+.|.|..         +..++.    ...+..++.+|+|.|+|.|.|..|
T Consensus       174 ~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~~g~~~~v~~~d~G~Y~C~a~N~~G  252 (265)
T 2oz4_A          174 QTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQG  252 (265)
T ss_dssp             EEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTSCEECCGGGCEEEEEEEEETTE
T ss_pred             ccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccCCCCcEEEeehhhCeEEEEEEECCCC
Confidence                     0        11  12458899999981         111211    011234888999999999999998

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.94  E-value=2.4e-09  Score=75.18  Aligned_cols=70  Identities=13%  Similarity=0.017  Sum_probs=49.1

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC-C-c------------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP-T-H------------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWY   73 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~-~-~------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   73 (145)
                      +..+..+.+-|-+. .+.+.+.||++.. . .            ....+.+|+.+..+  ..++++|.|.+++.+|+|.|
T Consensus        11 v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~--~~~~~~L~I~~v~~~D~G~Y   87 (238)
T 1bec_A           11 AVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP--SQEQFSLILELATPSQTSVY   87 (238)
T ss_dssp             EETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECC--SSSEEEEEESSCCGGGCEEE
T ss_pred             EeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEec--CCCEEEEEEecCCcccCEEE
Confidence            45677788888874 3577889988641 1 0            01134677776432  24578999999999999999


Q ss_pred             EEEEEEe
Q psy534           74 ECKVVFL   80 (145)
Q Consensus        74 ~C~~~~~   80 (145)
                      +|.+.+.
T Consensus        88 ~C~~~~~   94 (238)
T 1bec_A           88 FCASGGG   94 (238)
T ss_dssp             EEEEESC
T ss_pred             EEEEecC
Confidence            9999753

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=2e-09  Score=67.84  Aligned_cols=66  Identities=15%  Similarity=0.115  Sum_probs=49.8

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+..+.+.|.+.|.|.|.+.|++++... .   .+|..+..   .....+|.|.+++.+|+|.|.|.+.+.
T Consensus        36 v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l-~---~~~~~~~~---~~~~~~L~i~~~~~~D~G~Y~C~a~N~  101 (118)
T 2e7c_A           36 RKVGEQLNLVVPFQGKPRPQVVWTKGGAPL-D---TSRVHVRT---SDFDTVFFVRQAARSDSGEYELSVQIE  101 (118)
T ss_dssp             EESSSCEEEEEEEEEESCCEEEEEETTEEC-C---CSSCEEEE---CSSEEEEEESSCCTTTCEEEEEEEECS
T ss_pred             EECCCEEEEEEEEccCCCCEEEEEECCEEC-C---CCcEEEEE---CCCeEEEEECCCChhcCEEEEEEEEeC
Confidence            345677888999999999999999997542 2   13333321   133677999999999999999999753

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.93  E-value=3.7e-09  Score=66.61  Aligned_cols=69  Identities=17%  Similarity=0.213  Sum_probs=51.2

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+..+.+.|.+.|.|.|.+.|++++.....  -..|+.+..+  ..+..+|.|.+++.+|+|.|.|.+.+.
T Consensus        27 v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~--~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~   95 (116)
T 2kkq_A           27 VLEGDSVKLECQISAIPPPKLFWKRNNEMVQF--NTDRISLYQD--NTGRVTLLIKDVNKKDAGWYTVSAVNE   95 (116)
T ss_dssp             EETTEEEEEEEEBCCBSCCEEEEEETTEECCC--CBTTEEEEEC--TTCEEEEEEEEECGGGCEEEEEEEEET
T ss_pred             EeCCCcEEEEEEEeccCCCEEEEEECCEECcC--CCCeEEEEeC--CCCeEEEEECCCCcccCEEEEEEEEcC
Confidence            44667888999999999999999999854221  1345555432  123458999999999999999999753

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=98.92  E-value=3e-09  Score=64.48  Aligned_cols=61  Identities=13%  Similarity=0.103  Sum_probs=47.4

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+..+.+.|.+.|.| |.+.|+|++... .  ..+|+.+       .+.+|.|.+++.+|+|.|.|.+.+
T Consensus        21 v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~-~--~~~~~~~-------~~~~L~i~~~~~~D~G~Y~C~a~n   81 (95)
T 2ckn_A           21 VHPGDLLQLRCRLRDDV-QSINWLRDGVQL-V--ESNRTRI-------TGEEVEVRDSIPADSGLYACVTSS   81 (95)
T ss_dssp             ECTTSCEEEECCEESSC-CEEEEEBTTBCC-C--CCSSEEE-------CSSEEEESSCCGGGSEEEEEEEEE
T ss_pred             EcCCCeEEEEEECCCCC-CceEEEECCEec-C--CCCCEEE-------eCCEEEECCCChHHCEEEEEEecc
Confidence            34567788889998988 899999987542 2  2345544       167899999999999999999975

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=98.92  E-value=3.9e-09  Score=73.99  Aligned_cols=72  Identities=6%  Similarity=-0.065  Sum_probs=46.4

Q ss_pred             HhhhccceeeEEeecC-CCc-c-EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADD-EDI-P-VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g-~p~-p-~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ....+..+.+.|.+.| .|. | .+.|++++...... .........+..-....+|.|.+++.+|+|.|+|.+.+
T Consensus        24 ~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~-~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~   98 (231)
T 2w59_A           24 ELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRP-DPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQH   98 (231)
T ss_dssp             HHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCC-CCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEEC
T ss_pred             hcccCCceEEEEEEeCccCCCCeEEEEEcCCeecccc-ccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEc
Confidence            3457788999999987 464 5 99999887543111 11111110100001245799999999999999999965

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.91  E-value=5.2e-09  Score=73.25  Aligned_cols=72  Identities=13%  Similarity=0.136  Sum_probs=49.9

Q ss_pred             HhhhccceeeEEeecCC--CccEEEEecCCC---Cc-c----------c-ccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            7 VKSIFQMLSVGDFADDE--DIPVYIWYDSYP---TH-E----------A-EEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~--p~p~~~w~k~~~---~~-~----------~-~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      ++..+..+.+-|.+.+.  +.+.+.||+...   .. +          . ..+.+|+.+..+ ...++.+|.|.+++.+|
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~~D   90 (230)
T 1ypz_F           12 SRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKN-PSASTSILTIYSLEEED   90 (230)
T ss_dssp             EEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEEC-CTTTEEEEEECSCCGGG
T ss_pred             EEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEc-CCCCEEEEEECcCChhh
Confidence            34567778888888764  556788887531   10 0          0 115688887542 23357899999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|+|.+.+
T Consensus        91 ~G~Y~C~~~~  100 (230)
T 1ypz_F           91 EAIYYCSYGE  100 (230)
T ss_dssp             CSEEEEEECC
T ss_pred             CEEEEEEEEC
Confidence            9999999864

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=98.91  E-value=8.2e-10  Score=68.61  Aligned_cols=66  Identities=15%  Similarity=0.144  Sum_probs=50.5

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.++.+.|.+.|.|.|.+.|++++... .  ...|+.+...   ....+|.|.+++.+|+|.|.|.+.+
T Consensus        26 v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l-~--~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N   91 (106)
T 1nct_A           26 VYEGESARFSCDTDGEPVPTVTWLRKGQVL-S--TSARHQVTTT---KYKSTFEISSVQASDEGNYSVVVEN   91 (106)
T ss_dssp             ESSSSCEECCEEEECSSCCBCCBCSSSSCC-T--TCSSEEEEEC---SSEEEEEECCCCSSCCSEEEECCBC
T ss_pred             EeCCCcEEEEEEEEEcCCCEEEEEECCEEC-C--CCCCEEEEEC---CCEEEEEECcCCchhCEEEEEEEEe
Confidence            345677888899999999999999987542 2  2234444321   3478999999999999999999875

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=98.90  E-value=1.9e-09  Score=66.52  Aligned_cols=64  Identities=25%  Similarity=0.420  Sum_probs=44.6

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.++.+.|-+.|.|.|.+.|++++.... .  ..+..+.     ..+.+|.|.+++.+|+|.|.|.+.+
T Consensus        22 v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~-~--~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~n   85 (108)
T 3kvq_A           22 TSIGESIEVSCTASGNPPPQIMWFKDNETLV-E--DSGIVLK-----DGNRNLTIRRVRKEDEGLYTCQACS   85 (108)
T ss_dssp             EETTCCEEEECBCC----CCEEEEESSSBCC-C--BTTEEEE-----TTTTEEEECSCCGGGCEEEEEEEC-
T ss_pred             EeCCCeEEEEEECcCcCCCeEEEEECCeEcc-c--CCCeEEe-----CCCcEEEEeecCcccCEEEEEEEEe
Confidence            3456778888999999999999999885422 1  2233332     2368899999999999999999964

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=98.89  E-value=2.7e-09  Score=68.93  Aligned_cols=74  Identities=14%  Similarity=0.160  Sum_probs=51.8

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccc-------cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAE-------EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~-------~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|-+.|.|.|.+.|++++......       ....|+.+........+++|.|.+++.+|+|.|+|.+.+.
T Consensus        33 v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  112 (137)
T 3qr2_A           33 RWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASND  112 (137)
T ss_dssp             EETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSCCGGGCEEEEEEEECC
T ss_pred             EeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCCCcccCEEEEEEEEec
Confidence            345677888999999999999999976432110       0123444322111234789999999999999999999875


Q ss_pred             c
Q psy534           81 N   81 (145)
Q Consensus        81 ~   81 (145)
                      .
T Consensus       113 ~  113 (137)
T 3qr2_A          113 P  113 (137)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.89  E-value=3.1e-10  Score=83.00  Aligned_cols=116  Identities=11%  Similarity=0.121  Sum_probs=74.2

Q ss_pred             cceeeEEeecCC-C-ccEEEEecCCCCcccccccceEEEecCCCC-CCeeeEEEcccCCCCCEEEEEEEEEecC------
Q psy534           12 QMLSVGDFADDE-D-IPVYIWYDSYPTHEAEEYKGRISRVDKESP-FGMASLNLTKIRESDQGWYECKVVFLNR------   82 (145)
Q Consensus        12 ~~~~~~~w~~g~-p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~-~~~~sL~I~~v~~~D~G~Y~C~~~~~~~------   82 (145)
                      .++.+.|-+.|. | .+.+.|+|++... ............+ .. .....|.|.++..+|+|.|+|++.+...      
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l-~~~~~~~~~~~~~-g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  102 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVM-DVDLSTASTTQEG-ELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDST  102 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEEC-CGGGEEEEEEEET-TEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEE
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEc-ccceecCCcCccC-CcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceee
Confidence            478899999875 4 5789999987542 2111110011110 00 1145688888888999999999975320      


Q ss_pred             ----------------CCC--CCCCCcEEEEEEeE----------Ee---c-C----------------C-----cEEEE
Q psy534           83 ----------------SPN--SHKNGTWFHLDVHG----------VF---N-D----------------G-----TELRI  109 (145)
Q Consensus        83 ----------------~~~--~~~~g~~~~l~c~~----------~~---~-~----------------~-----~~L~i  109 (145)
                                      ++.  ....|+.+.|.|..          .+   . +                +     ..|.|
T Consensus       103 ~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I  182 (323)
T 2wqr_A          103 KKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPV  182 (323)
T ss_dssp             CCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEEC
T ss_pred             ecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEE
Confidence                            010  01248889999971          00   1 1                0     14889


Q ss_pred             cccCCCCCeeeEEEEecCCC
Q psy534          110 SNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       110 ~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+++.+|+|.|+|.|.|..+
T Consensus       183 ~~~~~~D~G~Y~C~a~n~~~  202 (323)
T 2wqr_A          183 GTRDWIEGETYQCRVTHPHL  202 (323)
T ss_dssp             CHHHHHTTCCEEEEEECTTS
T ss_pred             CHHHccCCCCEEEEEECCCC
Confidence            99999999999999999864

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=1.9e-09  Score=65.69  Aligned_cols=64  Identities=16%  Similarity=0.131  Sum_probs=48.5

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|.+.|.|.|.+.|++++..... .  .+ ...     .+..+|.|.+++.+|+|.|.|.+.+.
T Consensus        23 v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~-~--~~-~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~   86 (99)
T 2yr3_A           23 VIEGQDFVLQCSVRGTPVPRITWLLNGQPIQY-A--RS-TCE-----AGVAELHIQDALPEDHGTYTCLAENA   86 (99)
T ss_dssp             ECTTCCEEEECEEEEESCCCCEEEESSSBCSS-C--CC-EEE-----TTEEEEEECSCCTTCCBCEEEEEECS
T ss_pred             EeCCCeEEEEEEEeeeCCCeEEEEECCEECcc-c--ce-Eee-----CCeEEEEECCCChhhCEEEEEEEEEC
Confidence            34567788889999999999999998754221 1  11 111     34788999999999999999999753

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=98.89  E-value=5.8e-09  Score=67.52  Aligned_cols=72  Identities=22%  Similarity=0.242  Sum_probs=51.3

Q ss_pred             hhhccceeeEEeecCCC---ccEEEEecCCCC--------------cccccccceEEEecCCCCCCeeeEEEcccCCCCC
Q psy534            8 KSIFQMLSVGDFADDED---IPVYIWYDSYPT--------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQ   70 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p---~p~~~w~k~~~~--------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   70 (145)
                      +..+..+.+-|.+.+.+   .+.+.|+++...              ...+.+.+|+.+..+....++.+|.|.+++.+|+
T Consensus        18 ~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   97 (139)
T 1pko_A           18 ALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDE   97 (139)
T ss_dssp             EETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGGGC
T ss_pred             EEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEccCCHHHC
Confidence            45567788889887543   368899887631              0123467888876543344578999999999999


Q ss_pred             EEEEEEEEE
Q psy534           71 GWYECKVVF   79 (145)
Q Consensus        71 G~Y~C~~~~   79 (145)
                      |.|+|.+.+
T Consensus        98 G~Y~C~v~~  106 (139)
T 1pko_A           98 GGYTCFFRD  106 (139)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEc
Confidence            999999975

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.89  E-value=1.4e-08  Score=79.14  Aligned_cols=72  Identities=18%  Similarity=0.199  Sum_probs=49.8

Q ss_pred             HhhhccceeeEEeecCCCc----cEEEEecCC--C-Cc------------ccccccceEEEecCCCCCCeeeEEEcccCC
Q psy534            7 VKSIFQMLSVGDFADDEDI----PVYIWYDSY--P-TH------------EAEEYKGRISRVDKESPFGMASLNLTKIRE   67 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~----p~~~w~k~~--~-~~------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~   67 (145)
                      .+..+..+.+-|.+.+.+.    +.+.||++.  . ..            ....+.+|+.+..+ ...++.+|.|++++.
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~v~~   89 (512)
T 1zvo_C           11 LVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVD-TSRNQFSLNLRSMSA   89 (512)
T ss_pred             EEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEec-CCCCEEEEEECcCCH
Confidence            3456777888888876532    668888753  1 10            12235678887543 233478999999999


Q ss_pred             CCCEEEEEEEEE
Q psy534           68 SDQGWYECKVVF   79 (145)
Q Consensus        68 ~D~G~Y~C~~~~   79 (145)
                      +|+|.|+|.+.+
T Consensus        90 ~Dsg~Y~C~~~~  101 (512)
T 1zvo_C           90 ADTAMYYCARGN  101 (512)
T ss_pred             HHCEEEEEEEEC
Confidence            999999999864

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=3e-09  Score=67.75  Aligned_cols=72  Identities=18%  Similarity=0.196  Sum_probs=47.4

Q ss_pred             hhhccceeeEEeecCC---CccEEEEecCCCCcccccccceEEEec--C-CCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDE---DIPVYIWYDSYPTHEAEEYKGRISRVD--K-ESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~---p~p~~~w~k~~~~~~~~~~~~R~~~~~--~-~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.++.+.|-+.|.   |.|.+.|||++-..+......++.+..  + .......+|+|.+++++|+|.|+|++.+
T Consensus        24 V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Cevsn  101 (118)
T 2edn_A           24 VETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKA  101 (118)
T ss_dssp             EETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEEEEC
T ss_pred             EeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEEEEEEE
Confidence            3456778888988765   799999999852211111112233211  0 0111368999999999999999999975

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.87  E-value=2.7e-09  Score=64.79  Aligned_cols=63  Identities=16%  Similarity=0.144  Sum_probs=45.4

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+..+.+.|-..+ |.|.+.|+|++... ..  ..|+.+..+   ....+|.|.+++.+|+|.|.|.|.
T Consensus        19 ~~g~~v~l~C~v~~-p~~~v~W~k~g~~i-~~--~~~~~i~~~---~~~~~L~I~~v~~~D~G~Y~C~a~   81 (91)
T 2lvc_A           19 ITSECVMLACEVDR-EDAPVRWYKDGQEV-EE--SDFVVLENE---GPHRRLVLPATQPSDGGEFQCVAG   81 (91)
T ss_dssp             CTTCCEEEEEECSC-TTSCCEEEETTSCC-CC--CSSCEEEEE---TTEEEEEESSCCGGGCSEEEEECS
T ss_pred             ECCCcEEEEEEECC-CCcEEEEEECCEEe-ee--eeeeeEEec---CCeEEEEeCCCChhhcEEEEEEEc
Confidence            35667788888755 77889999998653 22  233333321   235689999999999999999884

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=5.9e-09  Score=63.70  Aligned_cols=62  Identities=15%  Similarity=0.110  Sum_probs=47.7

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|-+.|.| |.+.|+|++... .  ...|+.+.       ..+|.|.+++.+|+|.|.|.+.+.
T Consensus        15 v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~-~--~~~~~~~~-------~~~L~i~~v~~~D~G~Y~C~a~n~   76 (99)
T 2cr3_A           15 VHPGDLLQLRCRLRDDV-QSINWLRDGVQL-A--ESNRTRIT-------GEEVEVQDSVPADSGLYACVTSSP   76 (99)
T ss_dssp             BCTTSCEEEECCCCSSC-CEEEEEESSSBC-C--CCSSEEEC-------SSEEEETTCCTTTCEEEEEEEEET
T ss_pred             EeCCCcEEEEEEecCCC-CeEEEEECCEEC-C--CCCcEEEE-------CCEEEEccCCHHHCEEEEEEEEeC
Confidence            45677888899888887 799999998542 1  22344441       568999999999999999999753

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=98.87  E-value=7.1e-09  Score=64.34  Aligned_cols=70  Identities=17%  Similarity=0.205  Sum_probs=52.0

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC---Cc--c------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP---TH--E------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~~--~------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      .+..+..+.+-|.+.+.|.+.+.||++..   ..  +      ...+.+|+.+..   .....+|.|.+++.+|+|.|+|
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~DsG~Y~C   88 (108)
T 1jhl_L           12 VASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG---SGTDFTLTISSLEPEDFAMYIC   88 (108)
T ss_dssp             EECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---SSSEEEEEECSCCTTCCSEEEE
T ss_pred             EEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEe---cCCEEEEEECCCCHHHCEEEEE
Confidence            45677889999999998888999998642   10  0      112356766532   2346889999999999999999


Q ss_pred             EEEE
Q psy534           76 KVVF   79 (145)
Q Consensus        76 ~~~~   79 (145)
                      .+.+
T Consensus        89 ~~~n   92 (108)
T 1jhl_L           89 QQHN   92 (108)
T ss_dssp             EECS
T ss_pred             EEcc
Confidence            9974

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=98.87  E-value=5.1e-09  Score=65.09  Aligned_cols=67  Identities=19%  Similarity=0.268  Sum_probs=44.2

Q ss_pred             hhccceeeEEeecCCCcc-----EEEEecCCCC-------------cccccccceEEEecCCCCCCeeeEEEcccCCCCC
Q psy534            9 SIFQMLSVGDFADDEDIP-----VYIWYDSYPT-------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQ   70 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p-----~~~w~k~~~~-------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   70 (145)
                      ..+..+.+-|.+.+.|.+     .+.|+++...             ...+.|++|+.+..     .+.+|.|.+++.+|+
T Consensus         7 ~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~sL~I~~v~~~D~   81 (110)
T 1ncn_A            7 YFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDS-----DSWTLRLHNLQIKDK   81 (110)
T ss_dssp             ETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEET-----TTTEEEECSCCGGGC
T ss_pred             EeCCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEEC-----CCEEEEEcCCChHHC
Confidence            345556666665543322     3666665321             12345778887743     268999999999999


Q ss_pred             EEEEEEEEEe
Q psy534           71 GWYECKVVFL   80 (145)
Q Consensus        71 G~Y~C~~~~~   80 (145)
                      |.|+|.+.+.
T Consensus        82 G~Y~C~v~~~   91 (110)
T 1ncn_A           82 GLYQCIIHHK   91 (110)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEcC
Confidence            9999999754

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.86  E-value=3.1e-08  Score=76.08  Aligned_cols=117  Identities=13%  Similarity=0.015  Sum_probs=76.3

Q ss_pred             hccceeeEEeecCC-Cc-c-EEEEecCCCCcccccccceEEEe-cCCCC-CCeeeEEEcccCCCCCEEEEEEEEEecC--
Q psy534           10 IFQMLSVGDFADDE-DI-P-VYIWYDSYPTHEAEEYKGRISRV-DKESP-FGMASLNLTKIRESDQGWYECKVVFLNR--   82 (145)
Q Consensus        10 ~~~~~~~~~w~~g~-p~-p-~~~w~k~~~~~~~~~~~~R~~~~-~~~~~-~~~~sL~I~~v~~~D~G~Y~C~~~~~~~--   82 (145)
                      .+.++.+.|.+.|. |. | .+.|++++.. ..  ........ ..+.. .....|.|..+..+|+|.|.|++.+...  
T Consensus       140 ~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~-~~--~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  216 (475)
T 1iga_A          140 PDGNVVIACLVQGFFPQEPLSVTWSESGQG-VT--ARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS  216 (475)
T ss_pred             CCCeEEEEEEEeeecCCCceEEEEcCCCcc-cc--eEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCc
Confidence            56678899999986 66 5 8999988632 11  00000000 00000 0135689999999999999999965421  


Q ss_pred             -----------------------------CCC-----C----CCCCcEEEEEEeEEe--c--------------------
Q psy534           83 -----------------------------SPN-----S----HKNGTWFHLDVHGVF--N--------------------  102 (145)
Q Consensus        83 -----------------------------~~~-----~----~~~g~~~~l~c~~~~--~--------------------  102 (145)
                                                   .+.     +    ...|+.+.|.|....  .                    
T Consensus       217 ~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W~~~~~~~~~~~~  296 (475)
T 1iga_A          217 QDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGP  296 (475)
T ss_pred             eeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEECCCCcCCccccC
Confidence                                         010     0    145889999998210  0                    


Q ss_pred             -----CC-----cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 -----DG-----TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 -----~~-----~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                           ++     ..|.|.+++.+|+|.|+|.|.|..|
T Consensus       297 ~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~  333 (475)
T 1iga_A          297 PERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPES  333 (475)
T ss_pred             ceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCC
Confidence                 11     1488999999999999999999988

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=98.86  E-value=2.3e-08  Score=70.87  Aligned_cols=109  Identities=15%  Similarity=0.110  Sum_probs=73.7

Q ss_pred             hhccceeeEEeecC-CCcc--EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEccc---CCCCCEE--EEEEEEEe
Q psy534            9 SIFQMLSVGDFADD-EDIP--VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKI---RESDQGW--YECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g-~p~p--~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v---~~~D~G~--Y~C~~~~~   80 (145)
                      ..+.++.+.|-+.| .|.|  .+.|++++.. +.    .++..       ....|.|..+   +.+|+|.  |+|.+.+.
T Consensus        16 ~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~-l~----~~~~~-------~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~   83 (265)
T 2oz4_A           16 EVDTQGTVVCSLDGLFPVSEAQVHLALGDQR-LN----PTVTY-------GNDSFSAKASVSVTAEDEGTQRLTCAVILG   83 (265)
T ss_dssp             ETTEEEEEEEEEESCSCGGGCEEEEEETTEE-CC----CEEEE-------CSSEEEEEEEEEECGGGCEEEEEEEEEEET
T ss_pred             ecCCCEEEEEEccCCCCCcceEEEEEeCCEE-CC----ceEee-------CCCeEEEEeecccccccCCcceEEEEEecC
Confidence            45778889999998 7887  9999999853 21    12222       1345666555   7888885  99999653


Q ss_pred             c----------C--CCC--------CCCCCcEEEEEEeEE------e--------cCCcEEEEcccCCCCCeeeEEEEec
Q psy534           81 N----------R--SPN--------SHKNGTWFHLDVHGV------F--------NDGTELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus        81 ~----------~--~~~--------~~~~g~~~~l~c~~~------~--------~~~~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .          +  .+.        ....|+.+.|.|...      .        .....|.|..+..+|.|.|+|.|.|
T Consensus        84 ~~~~~~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~p~~~i~W~g~~~~~~~~~~~l~i~~~~~~~~g~Y~C~a~n  163 (265)
T 2oz4_A           84 NQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATL  163 (265)
T ss_dssp             TEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEECCTTSEEEESSCSSSCCSSEECCEEECCGGGTTEEEEEEEEE
T ss_pred             CCCcEEEEEEEEeCCCCceeecCCceecCCCcEEEEEEccCCCEEEECCEEccCCCCcEEEEEccccccCCceEEEEEEc
Confidence            2          1  111        123599999999721      1        0113478888889999999999986


Q ss_pred             CC-C
Q psy534          127 VL-Y  129 (145)
Q Consensus       127 ~~-g  129 (145)
                      .. |
T Consensus       164 ~~~g  167 (265)
T 2oz4_A          164 EVAG  167 (265)
T ss_dssp             ECSS
T ss_pred             CCCC
Confidence            54 5

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=2.3e-09  Score=66.42  Aligned_cols=68  Identities=13%  Similarity=0.112  Sum_probs=48.9

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+..+.+.|.+.|.|.|.+.|++++... ......+... .   ..+..+|.|.+++.+|+|.|+|.+.+.
T Consensus        21 v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~-~~~~~~~~~~-~---~~~~~~L~i~~v~~~D~G~Y~C~a~n~   88 (110)
T 2dm3_A           21 VQEGKLCRMDCKVSGLPTPDLSWQLDGKPV-RPDSAHKMLV-R---ENGVHSLIIEPVTSRDAGIYTCIATNR   88 (110)
T ss_dssp             EESSSCBCCEEEEECSSCCEEECBBSSSBC-CCCSSEEEEE-C---TTSCEEEEESSCCGGGCSBBCEEEECS
T ss_pred             EeCCCEEEEEEEEEEcCCCEEEEEECCEEC-CCCCceEEEE-e---cCCeEEEEEeeCCcccCEEEEEEEECC
Confidence            345677888899999999999999987542 2221112221 1   123568999999999999999999753

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=98.85  E-value=3.9e-09  Score=63.45  Aligned_cols=58  Identities=19%  Similarity=0.134  Sum_probs=46.4

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|.+.|.|.|.+.|++++... .              .....+|.|.+++.+|+|.|.|.+.+.
T Consensus        15 v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~-~--------------~~~~~~L~i~~v~~~d~G~Y~C~a~n~   72 (91)
T 3bfo_A           15 LMPGSTLVLQCVAVGSPIPHYQWFKNELPL-T--------------HETKKLYMVPYVDLEHQGTYWCHVYND   72 (91)
T ss_dssp             ECTTSCEEEECEEECSSCCEEEEEETTEEC-T--------------TCCSSEEEESSCCGGGCEEEEEEEECS
T ss_pred             ecCCCcEEEEEEeccCCCCEEEEEcCCeeC-C--------------cCCCCeEEECCCCHHhCEEEEEEEEcC
Confidence            446778889999999999999999987431 1              012568999999999999999999853

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=98.85  E-value=9.9e-09  Score=64.23  Aligned_cols=73  Identities=11%  Similarity=0.064  Sum_probs=52.5

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC-Cccc--------ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP-THEA--------EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~-~~~~--------~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      .+..+.++.+-|.+.+.+ +.+.||+... ....        ....+|+.+..+.....+.+|.|.+++.+|+|.|+|.+
T Consensus        12 ~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~   90 (113)
T 1h5b_A           12 SLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAA   90 (113)
T ss_dssp             EEETTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEecCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChhhCEEEEEEE
Confidence            356778899999998765 6799998652 1100        22467777654322456789999999999999999999


Q ss_pred             EEe
Q psy534           78 VFL   80 (145)
Q Consensus        78 ~~~   80 (145)
                      .+.
T Consensus        91 ~n~   93 (113)
T 1h5b_A           91 EAS   93 (113)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            753

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.85  E-value=3.6e-09  Score=65.37  Aligned_cols=66  Identities=17%  Similarity=0.098  Sum_probs=48.3

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|.+.+.|.+ +.|||++... .  ...|+.+..+   ....+|.|.+++.+|+|.|.|.+.+.
T Consensus        20 v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~-~--~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~n~   85 (106)
T 2dlt_A           20 VKAAEQAVFKCEVSDEKVT-GKWYKNGVEV-R--PSKRITISHV---GRFHKLVIDDVRPEDEGDYTFVPDGY   85 (106)
T ss_dssp             EESSCCEECCCEESCSSCE-EEEEESSCBC-C--CCSSCEEEEE---TTEEEEEESSCCTTTCSCEEEEEETS
T ss_pred             EeCCCeEEEEEEEcCCCcc-eEEEcCCEEC-c--CCCCEEEEEe---CCEEEEEECCCCcCCCEEEEEEEccC
Confidence            3456777888999998888 9999998542 2  1234444221   22568999999999999999999754

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=98.85  E-value=1.1e-08  Score=64.38  Aligned_cols=66  Identities=11%  Similarity=0.050  Sum_probs=45.4

Q ss_pred             ceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           13 MLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        13 ~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.|.+.|.|.|.+.|+|++... ...-..++..... .....++|.|.+++.+|+|.|.|.|.+.
T Consensus        22 ~~~l~C~~~g~P~p~i~W~k~g~~l-~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~N~   87 (118)
T 1wwc_A           22 EHCIEFVVRGNPPPTLHWLHNGQPL-RESKIIHVEYYQE-GEISEGCLLFNKPTHYNNGNYTLIAKNP   87 (118)
T ss_dssp             EEEEEEEEECSSCCEEEEEETTEEC-CCSSSEEEEEEEC-SSEEEEEEEEESCCGGGCEEEEEEEEET
T ss_pred             ceEEEEEeeeeCCCeEEEEECCEEC-CCCCceeEEEecc-CccccEEEEECCCChhcCEEEEEEEECC
Confidence            3456688899999999999998542 2221122222111 1123678999999999999999999763

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=98.83  E-value=1.8e-08  Score=72.11  Aligned_cols=38  Identities=18%  Similarity=0.384  Sum_probs=29.8

Q ss_pred             ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           40 EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        40 ~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+++|+.+..+ ...++.+|.|.+++.+|+|.|+|.+.
T Consensus        85 ~~~~~R~~~~~~-~~~~~~sL~I~~v~~~DsG~Y~C~~~  122 (267)
T 3u1s_H           85 QKFQGRVTITRD-SGASTVYMELRGLTADDTAIYYCLTG  122 (267)
T ss_dssp             GGGTTTEEEEEC-GGGCCEEEEECSCCGGGCEEEEEEEE
T ss_pred             cccCCcEEEEEc-CCCCEEEEEECCCChhhCEEEEEEEC
Confidence            456788887543 23357789999999999999999985

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.83  E-value=6.6e-10  Score=84.33  Aligned_cols=121  Identities=12%  Similarity=0.071  Sum_probs=75.2

Q ss_pred             hhhccceeeEEeecCCC----ccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-
Q psy534            8 KSIFQMLSVGDFADDED----IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p----~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-   82 (145)
                      ...+.++.+.|-+.|.+    .+.+.|++++..... ..........+......++|.|.+++.+|+|.|.|.+.+... 
T Consensus       242 v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  320 (434)
T 1igy_B          242 LLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHT-AQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFP  320 (434)
T ss_dssp             HSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCC-CSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCS
T ss_pred             cccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCC-cccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCC
Confidence            56678889999999873    357999999854221 111111111110111256799999999999999999965321 


Q ss_pred             ---------------CCC--------CCCCCcEEEEEEeEE-----------e-----------------cCC-----cE
Q psy534           83 ---------------SPN--------SHKNGTWFHLDVHGV-----------F-----------------NDG-----TE  106 (145)
Q Consensus        83 ---------------~~~--------~~~~g~~~~l~c~~~-----------~-----------------~~~-----~~  106 (145)
                                     +|.        ....+..+.|.|...           .                 .++     ..
T Consensus       321 ~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~  400 (434)
T 1igy_B          321 APIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSK  400 (434)
T ss_dssp             SCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEE
T ss_pred             CceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEE
Confidence                           110        112466799999810           0                 011     13


Q ss_pred             EEEcccCCCCCeeeEEEEecCCC
Q psy534          107 LRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       107 L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      |.|.....+|.|.|+|.|.|...
T Consensus       401 l~i~~~~~~~~g~YtC~a~n~~l  423 (434)
T 1igy_B          401 LNVQKSNWEAGNTFTCSVLHEGL  423 (434)
T ss_dssp             EEEEHHHHHTTCCEEEEEEETTS
T ss_pred             EEECchhccCCCEEEEEEEcCCC
Confidence            45555556679999999999864

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=98.82  E-value=1.8e-08  Score=61.83  Aligned_cols=70  Identities=17%  Similarity=0.185  Sum_probs=51.0

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCccc-----ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEA-----EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~-----~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+..+.+.|-+.+.|.+.+.|++++...+.     ....+|+.+...  ...+.+|.|.+++.+|+|.|+|.+.+
T Consensus        18 v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~~n   92 (108)
T 3m45_A           18 VVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA--SWHELSISVSDVSLSDEGQYTCSLFT   92 (108)
T ss_dssp             EETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEE--SSSEEEEEECSCCGGGCEEEEEEECS
T ss_pred             EEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeec--CCCcEEEEECCCChhHCeEEEEEEEc
Confidence            34567788899999999999999998642111     112346655321  12578999999999999999999974

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=98.82  E-value=9.4e-09  Score=62.44  Aligned_cols=61  Identities=15%  Similarity=0.065  Sum_probs=46.1

Q ss_pred             hhhccceeeEEeec-CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFAD-DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+..+.+.|-+. |.|.+.+.|++++.... .   .+...       .+++|.|.+++.+|+|.|.|.+.+
T Consensus        22 v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~-~---~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~n   83 (98)
T 1gl4_B           22 VRPGADVTFICTAKSKSPAYTLVWTRLHNGKL-P---SRAMD-------FNGILTIRNVQPSDAGTYVCTGSN   83 (98)
T ss_dssp             ECTTCCEEEEEEEEESSSCCEEEEEEGGGBCC-C---TTEEE-------ETTEEEECSCCGGGCEEEEEEEEC
T ss_pred             EecCCCEEEEEeCCCCCCCcEEEEEeCCCCCC-C---ceeec-------CCCEEEEeCCChhhCEEEEEEecC
Confidence            45677888899998 78999999999753211 1   11111       267899999999999999999975

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=98.81  E-value=1.4e-08  Score=67.01  Aligned_cols=68  Identities=16%  Similarity=0.158  Sum_probs=50.0

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+..+.+.|.+.|.|.|.+.|||++... ..  ..|+.+...  ..+..+|.|.+++.+|+|.|+|.+.+.
T Consensus        53 v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~-~~--~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~  120 (154)
T 1fhg_A           53 VVEGSAARFDCKVEGYPDPEVMWFKDDNPV-KE--SRHFQIDYD--EEGNCSLTISEVCGDDDAKYTCKAVNS  120 (154)
T ss_dssp             EETTSCEEEEEEEEEESCCEEEEEETTEEC-CC--SSSEEEEEC--TTCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             EeCCCeEEEEEEEEEecCCEEEEEECCEEC-CC--CCcEEEEEC--CCCeEEEEECCCChhcCEEEEEEEEEC
Confidence            345667888899999999999999998542 21  233433211  123679999999999999999999753

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=98.81  E-value=1.1e-08  Score=65.15  Aligned_cols=70  Identities=11%  Similarity=0.083  Sum_probs=50.6

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCccc-----ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEA-----EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~-----~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.++.+.|-+.+.|.+.+.|++.+...+.     ....+|+.+...  .....+|.|.+++.+|+|.|+|.+.+
T Consensus        13 v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~a~n   87 (124)
T 3rbg_A           13 VEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH--SANQLSITVPNVTLQDEGVYKCLHYS   87 (124)
T ss_dssp             EETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEE--ETTEEEEEESSCCGGGCEEEEEEEES
T ss_pred             EcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeC--CCCEEEEEECCCChHHCEEEEEEEEc
Confidence            45678899999999999999999976543211     012344444221  13468999999999999999999974

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=98.79  E-value=1e-08  Score=62.32  Aligned_cols=64  Identities=8%  Similarity=-0.159  Sum_probs=45.3

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+..+.+.|-..+. .|.+.|||++.. +..  ..|+.+..+   ....+|.|.+++.+|+|.|+|.+.+
T Consensus        18 ~~G~~v~l~C~v~~~-~~~v~W~k~g~~-i~~--~~~~~i~~~---g~~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T 1waa_A           18 FVGETAHFEIELSEP-DVHGQWKLKGQP-LAA--SPDCEIIED---GKKHILILHNCQLGMTGEVSFQAAN   81 (93)
T ss_dssp             ETTSCEEEEEEESSS-SCCCEEEETTEE-CCC--BTTEEEEEE---TTEEEEEECSCCGGGCEEEEEEETT
T ss_pred             eCCCCEEEEEEECCC-CCeEEEEECCEE-CcC--CCCEEEEEE---CCEEEEEECCCChhhCEEEEEEECC
Confidence            456677788888764 477999999854 222  234444321   2356899999999999999999853

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=98.79  E-value=1.4e-08  Score=69.71  Aligned_cols=68  Identities=22%  Similarity=0.374  Sum_probs=49.5

Q ss_pred             hccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+.++.+.|.+.|.|.|.+.|++++..........|+.....   .....|.|.+++.+|+|.|+|.|.+.
T Consensus       122 ~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~N~  189 (212)
T 2yd6_A          122 RTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRS---ESIGALQIEQSEESDQGKYECVATNS  189 (212)
T ss_dssp             TTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEE---TTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             cCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEec---CCeEEEEEcCCCcccCEEEEEEEECC
Confidence            456788889999999999999999854332223345554321   23689999999999999999999864

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=98.79  E-value=9.2e-08  Score=66.68  Aligned_cols=61  Identities=11%  Similarity=-0.014  Sum_probs=46.7

Q ss_pred             hhhccceeeEEeecCCCcc--EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIP--VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p--~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+..+.+-|-+ |.|.|  .+.|++.+..     + +++.+.     .....|.|.+|+.+|+|.|.|.+.+.
T Consensus        19 v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~-----l-~~~~~~-----~~~~~L~I~~v~~~d~G~Y~C~a~n~   81 (210)
T 1gsm_A           19 VALGASRQLTCRL-ACADRGASVQWRGLDTS-----L-GAVQSD-----TGRSVLTVRNASLSAAGTRVCVGSCG   81 (210)
T ss_dssp             EETTCCEEEEEEE-CCSSTTCEEEEESSTTT-----T-CCEEEE-----SSEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EeCCCCEEEEEEC-CCCCCCcceEEeecccc-----c-CcEEec-----CCccEEEECccCcccCceEEEEEEeC
Confidence            3456778888999 88888  9999986532     1 344432     34788999999999999999999653

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=98.78  E-value=8e-09  Score=64.26  Aligned_cols=66  Identities=17%  Similarity=0.218  Sum_probs=47.2

Q ss_pred             hhhccceeeEEee-cCCCccEEEEecCCCC------------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEE
Q psy534            8 KSIFQMLSVGDFA-DDEDIPVYIWYDSYPT------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE   74 (145)
Q Consensus         8 ~~~~~~~~~~~w~-~g~p~p~~~w~k~~~~------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   74 (145)
                      +..+..+.+-|.+ .+.+.+.+.||+....            .....+++|+.+.     ..+++|.|.+++.+|+|.|.
T Consensus        15 ~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~-----~~~~sL~I~~v~~~DsG~Y~   89 (110)
T 2ptt_A           15 AYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLE-----ENNGALHISNVRKEDKGTYY   89 (110)
T ss_dssp             EETTSCEEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEEC-----TTTCCEEESSCCGGGCEEEE
T ss_pred             EecCCcEEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEe-----CCCccEEECCCCcccCeEEE
Confidence            4456677777777 4666678888873221            1123466788763     25789999999999999999


Q ss_pred             EEEE
Q psy534           75 CKVV   78 (145)
Q Consensus        75 C~~~   78 (145)
                      |.+.
T Consensus        90 C~v~   93 (110)
T 2ptt_A           90 MRVL   93 (110)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9996

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=1.1e-08  Score=62.95  Aligned_cols=63  Identities=13%  Similarity=0.021  Sum_probs=46.5

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+..+.+.|-+  .|.|.+.|||++.. +.  ...|+.+..+   ....+|.|.+++.+|+|.|.|.+.+
T Consensus        20 ~~G~~v~l~C~v--~p~p~v~W~k~g~~-l~--~~~r~~i~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N   82 (100)
T 2yuz_A           20 NLGKEICLKCEI--SENIPGKWTKNGLP-VQ--ESDRLKVVQK---GRIHKLVIANALTEDEGDYVFAPDA   82 (100)
T ss_dssp             ETTSCCCEEEEC--SSCCCEEEEETTEE-CC--CCSSEEEEEC---SSEEEEEESSCCGGGCSEEEEEESS
T ss_pred             cCCCCEEEEEEe--CCCCeEEEEECCEE-CC--CCCcEEEEEe---CCEEEEEECCCChhhCEEEEEEEcC
Confidence            456677788888  78889999999854 22  2245544321   2356899999999999999999975

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=8.7e-09  Score=63.27  Aligned_cols=65  Identities=17%  Similarity=0.162  Sum_probs=47.5

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.++.+.|.+.|.|.+ +.|||++.. +..  ..|+.+..+   .....|.|.+++.+|+|.|.|.+.+
T Consensus        22 v~~G~~v~l~C~~~~~p~~-v~W~k~g~~-~~~--~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~n   86 (104)
T 2e6p_A           22 FTTSERVVLTCELSRVDFP-ATWYKDGQK-VEE--SELLVVKMD---GRKHRLILPEAKVQDSGEFECRTEG   86 (104)
T ss_dssp             EESSSCEECCEECSSTTCC-CEEEETTEE-CCC--BTTBEEEEE---TTEEEEEESSCCTTTCEEEEEECSS
T ss_pred             EeCCCcEEEEEEecCCCCc-cEEeeCCEE-CCC--CCCEEEEeC---CCEEEEEECCCChhhCEEEEEEECC
Confidence            3457778888999999988 899998753 221  223333211   2357899999999999999999864

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.77  E-value=2.3e-08  Score=75.08  Aligned_cols=121  Identities=11%  Similarity=0.038  Sum_probs=72.9

Q ss_pred             hhhccceeeEEeecCC-Ccc---EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-
Q psy534            8 KSIFQMLSVGDFADDE-DIP---VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-   82 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~-p~p---~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-   82 (145)
                      ..++..+.+.|.+.|. |.|   .+.||+++.... .....+.....+.......+|.|..++.+|.|.|+|++.+... 
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~-~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~  258 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVH-TAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFP  258 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCcccc-CcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCC
Confidence            3456788899999877 333   699999984321 1111111111110111256799999999999999999964310 


Q ss_pred             ---------------CCC------C--CCCCcEEEEEEeE-----------Eec-----------------CC-----cE
Q psy534           83 ---------------SPN------S--HKNGTWFHLDVHG-----------VFN-----------------DG-----TE  106 (145)
Q Consensus        83 ---------------~~~------~--~~~g~~~~l~c~~-----------~~~-----------------~~-----~~  106 (145)
                                     +|.      .  ...|..+.|.|..           +..                 ++     ..
T Consensus       259 ~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~  338 (376)
T 2aty_A          259 APIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSK  338 (376)
T ss_pred             CceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEE
Confidence                           110      0  1237789999981           001                 11     12


Q ss_pred             EEEcccCCCCCeeeEEEEecCCC
Q psy534          107 LRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       107 L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      |.|.....+|.|.|+|.|+|..-
T Consensus       339 L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          339 LNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             EEEcHHHhCCCCcEEEEEEeCCC
Confidence            55555555678999999999754

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=98.77  E-value=2e-08  Score=62.34  Aligned_cols=70  Identities=14%  Similarity=0.226  Sum_probs=51.2

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC---Cc--c------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP---TH--E------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~~--~------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      .+..+.++.+-|.+.+.+.+.+.||+...   ..  +      ...+.+|+.+..   ...+.+|.|.+++.+|+|.|+|
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~DsG~Y~C   88 (108)
T 1qfw_M           12 SMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSG---SATDFTLTISSVQAEDFADYHC   88 (108)
T ss_dssp             ECCTTCCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCB---CSSEEEEEESSCCTTCCSEEEE
T ss_pred             EEcCCCCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEc---CCCEEEEEECCCChhhCEEEEE
Confidence            45678889999999887777899998642   10  0      112456776531   2346789999999999999999


Q ss_pred             EEEE
Q psy534           76 KVVF   79 (145)
Q Consensus        76 ~~~~   79 (145)
                      .+.+
T Consensus        89 ~~~~   92 (108)
T 1qfw_M           89 GQTY   92 (108)
T ss_dssp             EECS
T ss_pred             EEcc
Confidence            9863

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=98.76  E-value=1.6e-08  Score=64.45  Aligned_cols=72  Identities=15%  Similarity=0.129  Sum_probs=48.1

Q ss_pred             hhhccceeeEEeecCCCcc----EEEEecCCC---------------Cccc--ccccceEEEecCCCCC--------Cee
Q psy534            8 KSIFQMLSVGDFADDEDIP----VYIWYDSYP---------------THEA--EEYKGRISRVDKESPF--------GMA   58 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p----~~~w~k~~~---------------~~~~--~~~~~R~~~~~~~~~~--------~~~   58 (145)
                      +..+..+.+-|.+.+.+.+    .+.|++...               ....  ..|++|+.+..+....        .+.
T Consensus        14 ~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~~~~~~~   93 (128)
T 3r0n_A           14 GQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAELQDA   93 (128)
T ss_dssp             CCTTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCCCBCSBC
T ss_pred             EEcCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEeccccccccccccCCCCe
Confidence            3456667777777655433    677887521               1111  2378899886543222        267


Q ss_pred             eEEEcccCCCCCEEEEEEEEE
Q psy534           59 SLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        59 sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      +|.|.+++.+|+|.|+|.+..
T Consensus        94 sL~I~~v~~~D~G~Y~C~v~~  114 (128)
T 3r0n_A           94 TLALHGLTVEDEGNYTCEFAT  114 (128)
T ss_dssp             CEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEccCCchhCeEEEEEEEe
Confidence            999999999999999998753

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=98.76  E-value=1.8e-08  Score=62.69  Aligned_cols=70  Identities=14%  Similarity=0.161  Sum_probs=51.4

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC-C----cc------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP-T----HE------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~-~----~~------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      .+..+.++.+-|.+.+.+.+.+.||++.. .    .+      ...+.+|+.+..   .....+|.|.+++.+|+|.|+|
T Consensus        14 ~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~---~~~~~~L~I~~v~~~DsG~Y~C   90 (109)
T 2q20_A           14 SASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSG---SGTDFTFTISSLQPEDIATYYC   90 (109)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCEEEEE
T ss_pred             EecCCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEec---cCCEEEEEECCCChhhCEEEEE
Confidence            45677889999999988788899998642 1    00      112456776532   2347789999999999999999


Q ss_pred             EEEE
Q psy534           76 KVVF   79 (145)
Q Consensus        76 ~~~~   79 (145)
                      .+.+
T Consensus        91 ~~~~   94 (109)
T 2q20_A           91 QQYD   94 (109)
T ss_dssp             EECS
T ss_pred             EEee
Confidence            9964

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=98.76  E-value=1.7e-08  Score=62.62  Aligned_cols=70  Identities=14%  Similarity=0.151  Sum_probs=51.2

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC---Cc--c------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP---TH--E------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~~--~------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      .+..+.++.+-|.+.+.+.+.+.||+...   ..  +      ...+.+|+.+..   .....+|.|.+++.+|+|.|+|
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~DsG~Y~C   88 (107)
T 1i8k_A           12 SVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSG---TGTDFVFTIENTLSEDVGDYYC   88 (107)
T ss_dssp             ECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE---ETTEEEEEESSCCGGGCEEEEE
T ss_pred             EecCCCCEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEc---cCCEEEEEECCCCHHHCEEEEE
Confidence            45678889999999888778899998641   11  0      112456776532   2346789999999999999999


Q ss_pred             EEEE
Q psy534           76 KVVF   79 (145)
Q Consensus        76 ~~~~   79 (145)
                      .+.+
T Consensus        89 ~~~~   92 (107)
T 1i8k_A           89 LQSF   92 (107)
T ss_dssp             EECS
T ss_pred             EEee
Confidence            9863

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=98.75  E-value=2.7e-08  Score=60.73  Aligned_cols=63  Identities=10%  Similarity=-0.070  Sum_probs=46.3

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ...+.++.+.|-+. .|.|.+.||+++... ..  ..|+.+..+   ....+|.|.+++.+|+|.|.|.+
T Consensus        20 v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i-~~--~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a   82 (100)
T 2yuv_A           20 VDKGGRVRFVVELA-DPKLEVKWYKNGQEI-RP--STKYIFEHK---GCQRILFINNCQMTDDSEYYVTA   82 (100)
T ss_dssp             ECTTEEEEEEEEES-CTTSCEEEEESSCBC-CC--BTTEEEEEE---TTEEEEEEEEECTTTCCEEEEEE
T ss_pred             EcCCCcEEEEEEec-CCCceEEEEECCEEC-CC--CCCEEEEec---CCEEEEEEcCCCcCcCEEEEEEE
Confidence            34567788889888 689999999998542 22  234444221   22457999999999999999998

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=98.75  E-value=2.4e-08  Score=61.12  Aligned_cols=63  Identities=16%  Similarity=0.160  Sum_probs=46.9

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ...+..+.+.|.+.|.|.| +.|++++... .  ...|+.+..+   ....+|.|.+++.+|+|.|.|.+
T Consensus        20 v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l-~--~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~~   82 (103)
T 2e7b_A           20 VLEGGAATLRCVLSSVAAP-VKWCYGNNVL-R--PGDKYSLRQE---GAMLELVVRNLRPQDSGRYSCSF   82 (103)
T ss_dssp             EESSSCEEEEEECSSCCCS-CEEEESSSBC-C--CSSSEEEEEC---SSEEEEEECSCCTTTCCCEEEEC
T ss_pred             EECCCcEEEEEEEeCCCCC-eEEEECCEEC-C--CCCcEEEEEc---CCEEEEEEccCCcccCEEEEEEE
Confidence            3456778889999999988 9999987542 2  2235554322   23567999999999999999984

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.75  E-value=4.1e-09  Score=63.94  Aligned_cols=57  Identities=18%  Similarity=0.143  Sum_probs=46.3

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+..+.+.|.+.|.|.|.+.|+|++.....               ..+.+|.|.+++.+|+|.|.|.+.+
T Consensus        22 v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~---------------~~~~~L~i~~v~~~d~G~Y~C~a~n   78 (96)
T 2ens_A           22 VAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPL---------------PPSPVLILPEIGPQDQGTYSCVATH   78 (96)
T ss_dssp             ECTTCEEEEECCCSSCSSCCCCCEESSSBCSS---------------CCCSEEEEESCCTTTCEEEECEECC
T ss_pred             EcCCCeEEEEEEEccCCCCEEEEEECCEECcC---------------CCCCEEEECCCCcccCEEEEEEEEe
Confidence            45667888899999999999999998753111               1267899999999999999999975

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=98.74  E-value=3.6e-08  Score=59.63  Aligned_cols=63  Identities=10%  Similarity=0.030  Sum_probs=45.8

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ...+.++.+.|-. +.|.+.+.|||++... ...  .|+.+..+   ....+|.|.+++.+|+|.|.|.+
T Consensus        20 v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l-~~~--~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a   82 (95)
T 2k1m_A           20 VAAGSPAVFEAET-ERAGVKVRWQRGGSDI-SAS--NKYGLATE---GTRHTLTVREVGPADQGSYAVIA   82 (95)
T ss_dssp             EETTSCEEEEEEC-SSSSCCCEEECSSSEE-CSS--TTCEEEEE---TTEEEEEESSCCTTCCSEEEEEE
T ss_pred             EeCCCcEEEEEEe-CCCCCeEEEEECCEEC-CCC--CcEEEEEc---CCEEEEEEcCCCcccCEEEEEEE
Confidence            3456778888988 7888999999998542 211  23333221   22568999999999999999998

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=98.74  E-value=1.3e-08  Score=70.33  Aligned_cols=62  Identities=15%  Similarity=0.124  Sum_probs=46.0

Q ss_pred             ccceeeEEeecCC-CccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           11 FQMLSVGDFADDE-DIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        11 ~~~~~~~~w~~g~-p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +..+.+.|-+.|. |.|.+.|+|++... ..  ..|...     ..+..+|.|.+++.+|+|.|+|.|.|.
T Consensus       131 g~~v~l~C~v~g~~P~p~i~W~k~g~~l-~~--~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~N~  193 (207)
T 3rbs_A          131 ECNVLLKCKVANIKKETHIVWYKDEREI-SV--DEKHDF-----KDGICTLLITEFSKKDAGIYEVILKDD  193 (207)
T ss_dssp             TTEEEEEEEEESCCTTCEEEEEETTEEE-CC--CCCCCC-----SSEEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             CCcEEEEEEEeCCCCCCEEEEEECCEEC-CC--CCceEc-----CCCEEEEEECCCCcccCEEEEEEEEcC
Confidence            4456677888898 99999999998542 21  123221     234668999999999999999999864

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=98.74  E-value=1.1e-08  Score=64.71  Aligned_cols=66  Identities=15%  Similarity=0.154  Sum_probs=46.9

Q ss_pred             hhhccceeeEEeecC--CCccEEEEecCCCC----------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            8 KSIFQMLSVGDFADD--EDIPVYIWYDSYPT----------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g--~p~p~~~w~k~~~~----------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      +..+..+.+-|.+.+  .+.+.+.|++++..          .+.+.|++|+.+      ..+.+|.|++++.+|+|.|+|
T Consensus        15 ~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~------~~~~sL~I~~v~~~D~G~Y~C   88 (117)
T 3q0h_A           15 AEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP------GPGLGLTLQSLTVNDTGEYFC   88 (117)
T ss_dssp             EETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEE------CSTTCEEECSCCGGGCEEEEE
T ss_pred             EecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEe------CCceEEEEeeCChhhCEEEEE
Confidence            345666777777765  33456788876421          123457888886      237899999999999999999


Q ss_pred             EEEE
Q psy534           76 KVVF   79 (145)
Q Consensus        76 ~~~~   79 (145)
                      .+..
T Consensus        89 ~v~~   92 (117)
T 3q0h_A           89 IYHT   92 (117)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9853

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=98.73  E-value=2e-08  Score=63.74  Aligned_cols=70  Identities=19%  Similarity=0.256  Sum_probs=51.6

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC---Cc--c------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP---TH--E------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~~--~------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      ++..+..+.+-|.+.+.+.+.+.||+...   ..  +      ...+.+|+.+..   .....+|.|.+++.+|+|.|+|
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~---~~~~~~L~I~~v~~~DsG~Y~C   88 (120)
T 1mqk_L           12 SASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG---SGTQFSLKINSLLPEDFGSYYC   88 (120)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCEEEEE
T ss_pred             EEcCCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEec---cCCEEEEEECCCCHHHCEEEEE
Confidence            45678889999999988788899998641   10  0      112456776532   2347889999999999999999


Q ss_pred             EEEE
Q psy534           76 KVVF   79 (145)
Q Consensus        76 ~~~~   79 (145)
                      .+.+
T Consensus        89 ~~~~   92 (120)
T 1mqk_L           89 QHHY   92 (120)
T ss_dssp             EECS
T ss_pred             EEEe
Confidence            9974

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.73  E-value=7.2e-09  Score=79.62  Aligned_cols=67  Identities=16%  Similarity=0.218  Sum_probs=48.8

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+..+.+.|.+.|.|.|.+.|++++.........+|+...      .+++|.|.+++.+|+|.|+|.|.+.
T Consensus       397 v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~a~N~  463 (477)
T 2id5_A          397 VDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVF------PDGTLEVRYAQVQDNGTYLCIAANA  463 (477)
T ss_dssp             EETTCCEEECCCEEEESCCEEEEECTTSCBC-------CEEC------TTSCEEESSCCSTTCEEEEEEEEET
T ss_pred             EeCCCeEEEEEeccccCCCEEEEEECCccccccCCCceEEeC------CCCEEEEeeCChHHCEEEEEEEEeC
Confidence            345667778888889999999999998654333344566552      3678999999999999999999753

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=98.73  E-value=1.8e-08  Score=63.49  Aligned_cols=71  Identities=18%  Similarity=0.210  Sum_probs=46.0

Q ss_pred             hhccceeeEEeecC--CCccEEEEecCCCCcccc--cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADD--EDIPVYIWYDSYPTHEAE--EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g--~p~p~~~w~k~~~~~~~~--~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+..+.+.|-+.|  .|.+.+.|++++......  ....+.............+|.|.+++.+|+|.|.|.+.+
T Consensus        21 ~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n   95 (122)
T 3s35_X           21 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS   95 (122)
T ss_dssp             EETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             ecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEcc
Confidence            45678888999988  456789999987532110  011111111100011367899999999999999999975

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.73  E-value=3.1e-08  Score=61.25  Aligned_cols=65  Identities=11%  Similarity=0.035  Sum_probs=46.7

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+.++.+.|.+ +.|.+.+.|+|++... ... ..|+.+..+   ....+|.|.+++.+|+|.|.|.+.
T Consensus        28 v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l-~~~-~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~   92 (104)
T 1pd6_A           28 VSKGHKIRLTVEL-ADHDAEVKWLKNGQEI-QMS-GSKYIFESI---GAKRTLTISQCSLADDAAYQCVVG   92 (104)
T ss_dssp             EETTSCEEEEEEC-SSSSSCCEEEESSSEE-CCC-SSSSEEEEE---TTEEEEEECSCSSSSCEEEEEEET
T ss_pred             EecCCCEEEEEEE-cCCCCEEEEEECCEEC-CCC-CCeEEEEec---CCEEEEEECCCCcccCEEEEEEEC
Confidence            4556778888988 7888899999998642 221 134443211   224589999999999999999983

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=1.3e-08  Score=62.98  Aligned_cols=65  Identities=15%  Similarity=-0.010  Sum_probs=46.3

Q ss_pred             hhhccceeeEEeecCCCc-cEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDI-PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~-p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+..+.+.|-..+.|. +.+.|||++... ..  .+|+.+..+   ....+|.|.+++.+|+|.|+|.+.
T Consensus        20 v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i-~~--~~r~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~   85 (104)
T 2eny_A           20 VLEGESCSFECVLSHESASDPAMWTVGGKTV-GS--SSRFQATRQ---GRKYILVVREAAPSDAGEVVFSVR   85 (104)
T ss_dssp             EESSCCEEEEEECSSCCCSSCBCCBSSSSBC-SB--CSSCEEEEE---TTEEEEEECSCCTTTCSCEEEEET
T ss_pred             EcCCCcEEEEEEEcCCCCCceeEEEECCEEC-CC--CCCEEEEEc---CCEEEEEECCCCHHHCEEEEEEEC
Confidence            345667788898888764 478999998642 21  234444321   235689999999999999999874

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=98.73  E-value=1.5e-08  Score=63.65  Aligned_cols=71  Identities=24%  Similarity=0.177  Sum_probs=48.1

Q ss_pred             hhccceeeEEeecCCCc----cEEEEecCCCC------c------------ccccccceEEEecCCCCCCeeeEEEcccC
Q psy534            9 SIFQMLSVGDFADDEDI----PVYIWYDSYPT------H------------EAEEYKGRISRVDKESPFGMASLNLTKIR   66 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~----p~~~w~k~~~~------~------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~   66 (145)
                      ..+.++.+-|.+.+.+.    +.+.|+++...      .            ....+.+|+.+..+....++.+|.|.+++
T Consensus        18 ~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~   97 (126)
T 1eaj_A           18 AKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQ   97 (126)
T ss_dssp             ETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEECSCC
T ss_pred             EeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccCCeEEEEECcCC
Confidence            44566677777664432    45788776421      0            02456788887543233456899999999


Q ss_pred             CCCCEEEEEEEEE
Q psy534           67 ESDQGWYECKVVF   79 (145)
Q Consensus        67 ~~D~G~Y~C~~~~   79 (145)
                      .+|+|.|.|.+.+
T Consensus        98 ~~D~G~Y~C~v~~  110 (126)
T 1eaj_A           98 LSDIGTYQCKVKK  110 (126)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             hHHCeEEEEEEEc
Confidence            9999999999975

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.72  E-value=6.5e-08  Score=64.68  Aligned_cols=70  Identities=16%  Similarity=0.216  Sum_probs=51.4

Q ss_pred             hhhccceeeEEeecCCC-ccEEEEec---CCCCcccccccceEEEecCCCCCCeeeEEEcccC-CCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDED-IPVYIWYD---SYPTHEAEEYKGRISRVDKESPFGMASLNLTKIR-ESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p-~p~~~w~k---~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~-~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|-+.|.| .|.+.|++   ++...+.....+|+.+..+   .....|.|.+++ .+|+|.|.|.+.+.
T Consensus        95 ~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~~d~G~Y~C~a~N~  169 (184)
T 3b5h_A           95 INEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS---QGRSELHIENLNMEADPGQYRCNGTSS  169 (184)
T ss_dssp             ECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEE---TTEEEEEECSCCTTTSSEEEEEEEEET
T ss_pred             EcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEec---CCeeEEEEeeccccccCceEEEEEEeC
Confidence            34567788999999999 89999999   4433332233466665432   235689999999 99999999999753

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=98.72  E-value=1.5e-08  Score=64.42  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=30.2

Q ss_pred             cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      .+.|++|+.+.     ..+++|.|.+++.+|+|.|.|++.+
T Consensus        59 ~~~f~~R~~l~-----~~~~sL~I~nv~~~DsG~Y~c~v~~   94 (121)
T 2edo_A           59 ESKFKGRVRLD-----PQSGALYISKVQKEDNSTYIMRVLK   94 (121)
T ss_dssp             SCTTTTTCEEC-----TTTCCEEESSCCGGGCSEEEEEEEE
T ss_pred             ChhcCCcEEEe-----CCCceEEEeCCCHHHCeEEEEEEEc
Confidence            35688898873     2478999999999999999999964

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=98.72  E-value=8.9e-09  Score=70.76  Aligned_cols=64  Identities=14%  Similarity=0.033  Sum_probs=38.1

Q ss_pred             hhccceeeEEeecCCC----ccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEE------cccCCCCCEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDED----IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNL------TKIRESDQGWYECKVV   78 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p----~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I------~~v~~~D~G~Y~C~~~   78 (145)
                      ..+..+.+.|.+.|.+    .+.+.|||++..... ....+...      ..++.+.|      .....+|+|.|+|++.
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~-~~~~~~~~------~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~   88 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHN-AKTKPREE------QYNSTYRVVSVLTVLHQDWLNGKEYKCKVS   88 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECC-CEECCCEE------CTTSCEEEEEEEECCHHHHHTTCCEEEEEE
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccC-cccCCcee------ccCCcEEEEEEEEEEHHHccCCceEEEEEE
Confidence            5688899999998764    249999999843211 11111111      11233333      3333445999999996


Q ss_pred             E
Q psy534           79 F   79 (145)
Q Consensus        79 ~   79 (145)
                      +
T Consensus        89 n   89 (207)
T 1l6x_A           89 N   89 (207)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=98.71  E-value=1.6e-07  Score=66.40  Aligned_cols=69  Identities=13%  Similarity=0.172  Sum_probs=46.7

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCC--------------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPT--------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWY   73 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~--------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   73 (145)
                      +..+..+.+-|.+. .+.+.+.||++...              .....+.+|+.+..+  ..++.+|.|.+++.+|+|.|
T Consensus        15 v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~--~~~~~~L~I~~v~~~D~G~Y   91 (252)
T 1oga_E           15 RKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSRE--KKESFPLTVTSAQKNPTAFY   91 (252)
T ss_dssp             EETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCS--STTBCCEEECSCCSCCCEEE
T ss_pred             EcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEec--CCCEEEEEECcCChhhCEEE
Confidence            34566677777764 34677888875310              011235678876432  13478999999999999999


Q ss_pred             EEEEEE
Q psy534           74 ECKVVF   79 (145)
Q Consensus        74 ~C~~~~   79 (145)
                      +|.+.+
T Consensus        92 ~C~~~~   97 (252)
T 1oga_E           92 LCASSS   97 (252)
T ss_dssp             EEEEES
T ss_pred             EEEEec
Confidence            999865

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.70  E-value=9.7e-09  Score=62.85  Aligned_cols=68  Identities=13%  Similarity=0.126  Sum_probs=47.5

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccc-cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAE-EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~-~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.++.+.|-..|.| +.+.|||++...... ....|+.+..+   ....+|.|.+++.+|+|.|.|.+.+
T Consensus        20 v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~n   88 (101)
T 2edk_A           20 VFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKD---GKRHILIFSDVVQEDRGRYQVITNG   88 (101)
T ss_dssp             EESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEEC---SSEEEEECSSCCGGGCSBEEEECSS
T ss_pred             EcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEEC---CCEEEEEECCCChhhCEEEEEEEcC
Confidence            34566778889888888 899999998643211 11113344321   2356899999999999999998853

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.70  E-value=2.9e-08  Score=60.91  Aligned_cols=66  Identities=11%  Similarity=-0.013  Sum_probs=46.3

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+.++.+.|-+.| |.+.+.|||++.. +...-..|..+..+   ....+|.|.+++.+|+|.|.|.+.
T Consensus        19 v~~G~~v~l~C~~~~-~~~~v~W~k~g~~-l~~~~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~   84 (103)
T 1x44_A           19 AYCGERVELECEVSE-DDANVKWFKNGEE-IIPGPKSRYRIRVE---GKKHILIIEGATKADAAEYSVMTT   84 (103)
T ss_dssp             EETTEEEEEEEECSS-SSCCCEEEETTEE-CCCSTTCSEEEEEE---TTEEEEEEEEECTTTCSEEEEEET
T ss_pred             EECCCCEEEEEEecC-CCCeEEEEECCEE-CCCCCceEEEEEEc---CCEEEEEECCCCcccCEEEEEEEC
Confidence            345677788898877 6689999999854 22221113343221   235789999999999999999985

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=98.70  E-value=2.9e-08  Score=62.92  Aligned_cols=70  Identities=16%  Similarity=0.170  Sum_probs=50.9

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC---Cc--c------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP---TH--E------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~~--~------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      .+..+.++.+-|.+.+.+.+.+.||+...   ..  +      ...+.+|+.+..   .....+|.|.+++.+|+|.|+|
T Consensus        14 ~v~~G~~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~---~~~~~~L~I~~v~~~DsG~Y~C   90 (119)
T 2e27_L           14 SASLGGKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSG---SGRDYSFSISNLEPEDAATYYC   90 (119)
T ss_dssp             EEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE---ETTEEEEEECSCCGGGCEEEEE
T ss_pred             EEeCCCCEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEc---cCCEEEEEECCCChHHCEEEEE
Confidence            45677888999999888788899998641   11  0      112356776532   2347789999999999999999


Q ss_pred             EEEE
Q psy534           76 KVVF   79 (145)
Q Consensus        76 ~~~~   79 (145)
                      .+.+
T Consensus        91 ~~~~   94 (119)
T 2e27_L           91 LQYD   94 (119)
T ss_dssp             EECG
T ss_pred             EEcc
Confidence            9863

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=98.69  E-value=4.6e-08  Score=60.03  Aligned_cols=73  Identities=14%  Similarity=0.108  Sum_probs=46.6

Q ss_pred             hhhccceeeEEeecC--CCccEEEEecCCCCcccccccceEEEec--CCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADD--EDIPVYIWYDSYPTHEAEEYKGRISRVD--KESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g--~p~p~~~w~k~~~~~~~~~~~~R~~~~~--~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|.+.|  .+.+.+.|+|++............++..  ........+|.|.+++.+|+|.|.|.+.+.
T Consensus        22 v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   98 (112)
T 3so5_A           22 AIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNH   98 (112)
T ss_dssp             ECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCCeEEEEEEeC
Confidence            345677888899884  4568999999975422111111111100  000112578999999999999999999763

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.68  E-value=2.2e-08  Score=73.83  Aligned_cols=62  Identities=15%  Similarity=0.148  Sum_probs=42.7

Q ss_pred             hhccceeeEEeecCC-Cc-cEEEEecCCCCcccccc------cceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDE-DI-PVYIWYDSYPTHEAEEY------KGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~-p~-p~~~w~k~~~~~~~~~~------~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+..+.+.|.+.|. |. +.+.|++++.......+      .++...        ...|.|.+++.+| |.|+|.+.+
T Consensus       133 ~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~--------~s~L~i~~~~~~d-G~Y~C~a~n  202 (344)
T 1za6_B          133 TSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL--------SSVVTVPSSSLGT-QTYICNVNH  202 (344)
T ss_dssp             TSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEE--------EEEEEEETTHHHH-BCEEEEEEE
T ss_pred             cCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCeECCCCCEEE--------EEEEEEcHHHcCC-CcEEEEEEe
Confidence            356678889999876 65 78999998743110001      112111        4579999999888 999999965

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=98.67  E-value=3.8e-08  Score=66.08  Aligned_cols=65  Identities=17%  Similarity=0.140  Sum_probs=50.1

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+..+.+.|-+.|.|.|.+.|++++.. +......|....      .+++|.|.+++.+|+|.|.|.+.+.
T Consensus       113 ~~g~~~~l~C~~~g~p~~~v~W~~~~~~-~~~~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~a~n~  177 (191)
T 1epf_A          113 KEGEDAVIVCDVVSSLPPTIIWKHKGRD-VILKKDVRFIVL------SNNYLQIRGIKKTDEGTYRCEGRIL  177 (191)
T ss_dssp             CTTSCEEECCEEECSSCCEEEEEETTEE-GGGGCCTTEEEC------TTSCEEETTCCGGGCEEEEEEEEEG
T ss_pred             cCCCeEEEEEEECCCCCCEEEEEECCEE-eeccCCceEEEe------cCCeEEECCCChhhCEEEEEEEEEe
Confidence            4566778889999999999999998754 222233455542      3568999999999999999999864

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=98.67  E-value=2.6e-08  Score=63.78  Aligned_cols=69  Identities=22%  Similarity=0.330  Sum_probs=48.8

Q ss_pred             hhhccceeeEEeec---CCCccEEEEecCCCCc----c-----------------------cccccceEEEecCCCCCCe
Q psy534            8 KSIFQMLSVGDFAD---DEDIPVYIWYDSYPTH----E-----------------------AEEYKGRISRVDKESPFGM   57 (145)
Q Consensus         8 ~~~~~~~~~~~w~~---g~p~p~~~w~k~~~~~----~-----------------------~~~~~~R~~~~~~~~~~~~   57 (145)
                      +..+..+.+-|.+.   +.+.+.+.||++....    +                       .+.+++|+.+..    .++
T Consensus        16 v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~----~~~   91 (135)
T 1xt5_A           16 VHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN----LAA   91 (135)
T ss_dssp             EETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEESC----TTS
T ss_pred             EeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEEec----CCC
Confidence            34566777778764   3567788888765321    0                       134557887632    346


Q ss_pred             eeEEEcccCCCCCEEEEEEEEEe
Q psy534           58 ASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        58 ~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+|.|.+++.+|+|.|+|.+.+.
T Consensus        92 ~sL~I~~v~~~D~G~Y~C~v~~~  114 (135)
T 1xt5_A           92 PTLRLTHVHPQDGGRYWCQVAQW  114 (135)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECS
T ss_pred             CeEEECCCChhhCcEEEEEEEcC
Confidence            89999999999999999999753

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=2.1e-08  Score=61.41  Aligned_cols=65  Identities=15%  Similarity=0.074  Sum_probs=46.9

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+..+.+.|.+.+ |.+.+.|+|++.... .  ..|+.+..+   .....|.|.+++.+|+|.|.|.+.+
T Consensus        20 v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~-~--~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (103)
T 2edf_A           20 VAPGEDVELRCELSR-AGTPVHWLKDRKAIR-K--SQKYDVVCE---GTMAMLVIRGASLKDAGEYTCEVEA   84 (103)
T ss_dssp             ECTTSCEEECCEESS-SSCCCCEEESSCBCC-C--SSSEEEEEE---TTEEEEEESSCCTTTCSEEEEECSS
T ss_pred             EcCCCCEEEEEEEeC-CCCcEEEEECCEEcc-C--CCCEEEEEC---CCEEEEEECCCCcccCEEEEEEEcc
Confidence            345677788898887 778899999985422 1  224444321   2256799999999999999999864

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.66  E-value=9.6e-08  Score=64.25  Aligned_cols=69  Identities=22%  Similarity=0.257  Sum_probs=49.5

Q ss_pred             hhhccceeeEEeecCCCccEEEEecC--CCCcccccccceEEEecCCCCCCeeeEEEcccC-CCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDS--YPTHEAEEYKGRISRVDKESPFGMASLNLTKIR-ESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~--~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~-~~D~G~Y~C~~~~   79 (145)
                      ...+.++.+.|-+.|.|.|.+.|+++  +.........+|+.+..+   ....+|.|.+++ .+|+|.|.|.+.+
T Consensus       104 ~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~~d~G~Y~C~a~N  175 (190)
T 2wv3_A          104 KNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINK---ENYTELNIVNLQITEDPGEYECNATN  175 (190)
T ss_dssp             EETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEEC---SSEEEEEECSCCTTTSCEEEEEEEEC
T ss_pred             eeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecC---CCeeEEEEEeccccCCCEEEEEEEEe
Confidence            34567788899999999999999994  322111123455555332   235689999999 7999999999975

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=98.66  E-value=7.9e-08  Score=59.82  Aligned_cols=61  Identities=15%  Similarity=0.083  Sum_probs=44.3

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..+..+.+.|.+.+.  |.+.|||++... .  ...|+.+..+   ....+|.|.+++.+|+|.|.|.+
T Consensus        32 ~~G~~v~l~C~~~~~--p~v~W~k~~~~l-~--~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a   92 (113)
T 2edh_A           32 TEGATAVLRCELSKM--APVEWWKGHETL-R--DGDRHSLRQD---GARCELQIRGLVAEDAGEYLCMC   92 (113)
T ss_dssp             CTTSCEEEEEEESSC--CCCEEEESSSBC-C--CSSSEEEEEE---TTEEEEEECSCCSTTCEEEEEEE
T ss_pred             eCCCeEEEEEEECCC--CcEEEEECCEEC-C--CCCcEEEEEC---CCEEEEEECCCChhhCEEEEEEe
Confidence            456677888988775  678999988542 2  1245555321   22458999999999999999998

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=98.65  E-value=4.3e-08  Score=61.15  Aligned_cols=70  Identities=16%  Similarity=0.169  Sum_probs=50.9

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCC-----cc------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPT-----HE------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~-----~~------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      .+..+..+.+-|.+.+.+.+.+.||+...-     .+      ...+.+|+.+..   .....+|.|.+++.+|+|.|.|
T Consensus        15 ~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~---~~~~~~L~I~~v~~~DsG~Y~C   91 (111)
T 1i3g_L           15 STSVGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSG---SGTDFTLTISNVQSEDLADYFC   91 (111)
T ss_dssp             ECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCSEEEE
T ss_pred             EEcCCCCEEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEc---CCCEEEEEECCCCHHHCEEEEE
Confidence            456788889999998777778999986521     00      112456776532   2346789999999999999999


Q ss_pred             EEEE
Q psy534           76 KVVF   79 (145)
Q Consensus        76 ~~~~   79 (145)
                      .+.+
T Consensus        92 ~~~~   95 (111)
T 1i3g_L           92 QQYS   95 (111)
T ss_dssp             EECS
T ss_pred             EEec
Confidence            9863

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=98.65  E-value=6.4e-08  Score=59.70  Aligned_cols=63  Identities=17%  Similarity=0.104  Sum_probs=45.0

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+..+.+.|.+.+.  |.+.|++++... .  ...|+.+..+   ....+|.|.+++.+|+|.|+|.+.
T Consensus        20 v~~G~~v~l~C~~~~~--p~v~W~k~~~~~-~--~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~   82 (108)
T 2dm7_A           20 ASEGATATLQCELSKV--APVEWKKGPETL-R--DGGRYSLKQD---GTRCELQIHDLSVADAGEYSCMCG   82 (108)
T ss_dssp             EETTSCEEEEEEBSSS--CCCEEESSSSBC-C--SSSSCEEEEE---TTEEEEEESSCCTTTCSEEEEEET
T ss_pred             EeCCCcEEEEEEeCCC--CeeEEEECCEEC-C--CCCCEEEEec---CCEEEEEECCCCcccCEEEEEEEc
Confidence            3456778888988776  678999998542 2  1234444321   235569999999999999999983

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=98.65  E-value=6.1e-08  Score=60.35  Aligned_cols=70  Identities=17%  Similarity=0.187  Sum_probs=50.0

Q ss_pred             HhhhccceeeEEeecCCC----ccEEEEecCCC---Cc--c------cccccceEEEecCCCCCCeeeEEEcccCCCCCE
Q psy534            7 VKSIFQMLSVGDFADDED----IPVYIWYDSYP---TH--E------AEEYKGRISRVDKESPFGMASLNLTKIRESDQG   71 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p----~p~~~w~k~~~---~~--~------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G   71 (145)
                      .+..+..+.+-|.+.+.+    .+.+.||+...   ..  +      ...+.+|+.+..   .....+|.|.+++.+|+|
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~---~~~~~~L~I~~v~~~DsG   88 (111)
T 1j05_L           12 AVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG---SRTDFTLIIDPVEADDVA   88 (111)
T ss_dssp             ECCTTSCEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE---ETTEEEEEESSCCGGGCE
T ss_pred             EEeCCCCEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEc---cCCEEEEEECCCCcccCE
Confidence            456778889999988776    57789998641   10  0      123456776532   234678999999999999


Q ss_pred             EEEEEEEE
Q psy534           72 WYECKVVF   79 (145)
Q Consensus        72 ~Y~C~~~~   79 (145)
                      .|+|.+.+
T Consensus        89 ~Y~C~~~~   96 (111)
T 1j05_L           89 TYYCQQTN   96 (111)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEec
Confidence            99999863

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=98.64  E-value=6.5e-08  Score=60.13  Aligned_cols=71  Identities=18%  Similarity=0.167  Sum_probs=47.5

Q ss_pred             hhhccceeeEEeec-CCCcc----EEEEecCCCCc-c----------cccccceEEEecCCCCCC--eeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFAD-DEDIP----VYIWYDSYPTH-E----------AEEYKGRISRVDKESPFG--MASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~-g~p~p----~~~w~k~~~~~-~----------~~~~~~R~~~~~~~~~~~--~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|.+. +.+.+    .+.|++++... +          ... .+|+.+..+....+  +.+|.|.+++.+|
T Consensus        12 ~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~sL~I~~v~~~D   90 (118)
T 3udw_C           12 GFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE-SKRLEFVAARLGAELRNASLRMFGLRVED   90 (118)
T ss_dssp             EETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETT-CSSEEETTCCTTSCCCBCCEEECSCCGGG
T ss_pred             EeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCC-cCcEEEecccccCCCCCcEEEEeecChHH
Confidence            44567777888884 44322    48898874221 0          011 56777754433232  7899999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|+|.+.+
T Consensus        91 ~G~Y~C~v~~  100 (118)
T 3udw_C           91 EGNYTCLFVT  100 (118)
T ss_dssp             CEEEEEEEEE
T ss_pred             CeEEEEEEEE
Confidence            9999999975

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.64  E-value=2e-08  Score=70.10  Aligned_cols=64  Identities=20%  Similarity=0.212  Sum_probs=46.6

Q ss_pred             hccceeeEEeecCCCccEEEEecCCCCccc---------------------ccccceEEEecCCCCCCeeeEEEcccCCC
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEA---------------------EEYKGRISRVDKESPFGMASLNLTKIRES   68 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~---------------------~~~~~R~~~~~~~~~~~~~sL~I~~v~~~   68 (145)
                      .+.++.+.|-+.|.|.|.+.|++++.....                     ..+..+...      ....+|.|.+++.+
T Consensus       150 ~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~L~i~~v~~~  223 (250)
T 2fbo_J          150 EGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASF------SGARNLVIRAAKIT  223 (250)
T ss_dssp             TTCCEEECCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEE------ETTTEEEECSCCGG
T ss_pred             CCCcEEEEEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEeccccc------CCccEEEEecCCcc
Confidence            467788889999999999999998643211                     111122211      12478999999999


Q ss_pred             CCEEEEEEEEE
Q psy534           69 DQGWYECKVVF   79 (145)
Q Consensus        69 D~G~Y~C~~~~   79 (145)
                      |+|.|+|.|.+
T Consensus       224 D~G~Y~C~a~N  234 (250)
T 2fbo_J          224 DAGRVWCELAT  234 (250)
T ss_dssp             GCEEEEEEEES
T ss_pred             cCEEEEEEecC
Confidence            99999999986

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=98.63  E-value=5.4e-08  Score=58.72  Aligned_cols=59  Identities=17%  Similarity=0.200  Sum_probs=43.7

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+..+.+.|-+.|  .|.+.|+|++.. +.  ...|..+.       +.+|.|.+++.+|+|.|.|.+.+
T Consensus        14 ~~G~~~~l~C~~~~--~p~v~W~k~g~~-~~--~~~~~~~~-------~~~L~i~~~~~~D~G~Y~C~a~n   72 (95)
T 4hwu_A           14 APGESLELQCMLKD--AAVISWTKDGVH-LG--PNNRTVLI-------GEYLQIKGATPRDSGLYACTAAR   72 (95)
T ss_dssp             CTTSCEEEECCCCT--TCEEEEEETTEE-EC--CCSSEEEE-------TTEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCCCEEEEEEEeCC--CCEEEEEECCEE-CC--CCceEEEe-------CCEEEECcCCcccCEEEEEEEcc
Confidence            35667777887776  478999998743 22  22344432       56899999999999999999975

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=98.63  E-value=3.8e-08  Score=61.62  Aligned_cols=67  Identities=18%  Similarity=0.208  Sum_probs=44.2

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCccccc--ccceEEEecCCCCCCeeeEEE-----cccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEE--YKGRISRVDKESPFGMASLNL-----TKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~--~~~R~~~~~~~~~~~~~sL~I-----~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|-+.|.|.|.+.|++++.......  ...+....      .++.+.+     .+++.+|+|.|.|.+.+.
T Consensus        21 v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~v~~~D~G~Y~C~a~N~   94 (117)
T 2v9t_A           21 VSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL------PSGSLFFLRIVHGRKSRPDEGVYVCVARNY   94 (117)
T ss_dssp             ECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEEC------TTSCEEESSCCCBTTBCSSCEEEEEEEEET
T ss_pred             EcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEe------cCCcEEEEEEEeCCCCcCcCEEEEEEEEeC
Confidence            3456778888999999999999999875322111  11122221      1333333     366899999999999864

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=98.63  E-value=8.8e-08  Score=59.49  Aligned_cols=72  Identities=14%  Similarity=0.176  Sum_probs=50.5

Q ss_pred             HhhhccceeeEEe-ecCCC-ccEEEEecCCCCc---------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDF-ADDED-IPVYIWYDSYPTH---------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w-~~g~p-~p~~~w~k~~~~~---------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      .+..+.++.+-|. +.+.+ .+.+.||+.....         ....+.+|+.+..+ ......+|.|.+++.+|+|.|+|
T Consensus        11 ~v~~G~~v~L~C~v~~~~~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~~DsG~Y~C   89 (109)
T 1pew_A           11 SESPGKTVTISCTRSSGNIASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSID-RSSNSASLTISGLKTEDEADYYC   89 (109)
T ss_dssp             EECTTSCEEEEEEESSSCGGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEE
T ss_pred             EEcCCCCEEEEEEeCCCCCCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEec-cCCCEEEEEECCCChhhCEEEEE
Confidence            3556788888998 77664 4678898876211         01224577776422 23457899999999999999999


Q ss_pred             EEEE
Q psy534           76 KVVF   79 (145)
Q Consensus        76 ~~~~   79 (145)
                      .+.+
T Consensus        90 ~~~~   93 (109)
T 1pew_A           90 QSYD   93 (109)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9974

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=98.63  E-value=1.9e-07  Score=58.18  Aligned_cols=72  Identities=19%  Similarity=0.342  Sum_probs=50.7

Q ss_pred             HhhhccceeeEEeecCC--CccEEEEecCCC---CcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDE--DIPVYIWYDSYP---THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~--p~p~~~w~k~~~---~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      .+..+.++.+-|.+.+.  +.+.+.||++..   ...-....+|+.+..+ ......+|.|.+++.+|+|.|+|.+.+
T Consensus        11 ~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~~~~   87 (111)
T 2ywz_A           11 TKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVD-KGSKSFSLRISDLRVEDSGTYKCQADY   87 (111)
T ss_dssp             EECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCSBTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceEeeEeCCCEEEEEe-CCCCEEEEEECCCChhcCEEEEEEEEc
Confidence            45678889999999865  578899998631   1111123456654221 223578999999999999999999986

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=98.62  E-value=2.1e-07  Score=66.41  Aligned_cols=72  Identities=10%  Similarity=0.040  Sum_probs=48.9

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|.+.|.|.|.+.|++++... ....................+|.|.+++.+|+|.|.|.|.+.
T Consensus       193 v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  264 (289)
T 3mjg_X          193 VRQGENITLMCIVIGNEVVNFEWTYPRKES-GRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTES  264 (289)
T ss_dssp             EETTSCEEEEEEEESCSSBEEEEECTTSSS-SCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEET
T ss_pred             eEcCCCEEEEEEECCCCCcceEEEcCCccC-CCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecC
Confidence            345678889999999999999999776421 111111111111101223688999999999999999999864

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=98.62  E-value=4e-08  Score=67.88  Aligned_cols=66  Identities=15%  Similarity=0.029  Sum_probs=43.7

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCccc-ccccceEEEecCCCCCCeeeE---EEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEA-EEYKGRISRVDKESPFGMASL---NLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~-~~~~~R~~~~~~~~~~~~~sL---~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.++.+.|-+.|.|.|.+.|+++++.... .....|+....      +++|   .|.+++.+|+|.|+|.|.|.
T Consensus       119 ~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~------~g~l~il~i~~v~~~D~G~YtC~A~N~  188 (203)
T 4fa8_A          119 PDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEK------DGSLSVAVDLSLPKPWHLPVTCVGKND  188 (203)
T ss_dssp             SCSCCEEEEEEEEEESCCEEEECCC------------CCEECT------TSCEEEEEEEEECSSCCCCEEEEEESS
T ss_pred             cCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEeC------CCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence            4567788899999999999999887654322 22345665532      4444   45699999999999999853

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=98.62  E-value=8.1e-08  Score=61.59  Aligned_cols=71  Identities=18%  Similarity=0.141  Sum_probs=48.3

Q ss_pred             hhhccceeeEEeec-------CCCccEEEEecCCCC-----cc---------cccccceEEEecCCCCCCeeeEEEcccC
Q psy534            8 KSIFQMLSVGDFAD-------DEDIPVYIWYDSYPT-----HE---------AEEYKGRISRVDKESPFGMASLNLTKIR   66 (145)
Q Consensus         8 ~~~~~~~~~~~w~~-------g~p~p~~~w~k~~~~-----~~---------~~~~~~R~~~~~~~~~~~~~sL~I~~v~   66 (145)
                      +..+..+.+-|.+.       +.+.+.+.||+....     .+         ...+.+|+.+..+ ...++.+|.|.+++
T Consensus        18 ~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~v~   96 (132)
T 1nko_A           18 VQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGD-PQTKNCTLSIRDAR   96 (132)
T ss_dssp             EETTCCEEECEEEECCCCTTTTTSCCEEEEEEC-----CCSCSEESCTTCCCCGGGTTTEEECSC-GGGTBCCEEECSCC
T ss_pred             EcCCCeEEEEccccCCCccccCCCccEEEEEECCCCCCcccEEEeCCCccccccccCccEEEeCC-CCCCceEEEEcccC
Confidence            44566777778775       234567888876421     11         1346789887543 23457899999999


Q ss_pred             CCCCEEEEEEEEE
Q psy534           67 ESDQGWYECKVVF   79 (145)
Q Consensus        67 ~~D~G~Y~C~~~~   79 (145)
                      .+|+|.|+|.+..
T Consensus        97 ~~DsG~Y~C~v~~  109 (132)
T 1nko_A           97 MSDAGRYFFRMEK  109 (132)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCeeEEEEEEc
Confidence            9999999999874

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.61  E-value=3.1e-08  Score=62.08  Aligned_cols=64  Identities=11%  Similarity=0.017  Sum_probs=45.9

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..+..+.+.|-+.|.|.|.+.|||++... ..  ..|..+...  .....+|.|.+++.+|+|.|.|.+
T Consensus        26 ~~G~~v~l~C~~~g~p~p~v~W~k~g~~l-~~--~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~~   89 (115)
T 2cr6_A           26 QEGSSATFRCRISPANYEPVHWFLDKTPL-HA--NELNEIDAQ--PGGYHVLTLRQLALKDSGTIYFEA   89 (115)
T ss_dssp             ETTSCEECCCEEESTTCCSCEEEESSCEE-CC--SSSCCBCCB--TTTBCCBEECSCCTTTCEEEEEEE
T ss_pred             eCCCcEEEEEEEcCCCCCccEEEECCEEC-CC--CCcEEEEEc--CCCEEEEEEcCCChhhCEEEEEEE
Confidence            45667778898889999999999998542 21  123322100  123568999999999999999985

>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}

Probab=98.61  E-value=2.3e-07  Score=65.77  Aligned_cols=61  Identities=18%  Similarity=0.284  Sum_probs=40.1

Q ss_pred             eEEeecCCCccEEEEe---c--CCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           16 VGDFADDEDIPVYIWY---D--SYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        16 ~~~w~~g~p~p~~~w~---k--~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      -+.|+|..|-..+.|.   .  ++.....+.+++|+.+..+ .......|++.+++.+|++.|+|..
T Consensus        33 ~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~kgR~TiSrD-~s~nt~yLqm~sL~~eDTAvYYCAr   98 (254)
T 4f9p_D           33 LIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKDRTTLTAD-QSSSTAYMQLSSLTSDDSAVYFCAR   98 (254)
T ss_dssp             CEEEEEEETTTEEEEEEEEETTTTEEECCTTTTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEECEE
T ss_pred             cEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhCCCEEEeec-cCCCcCeeEEccCCCCCCEEEEEEe
Confidence            3557774443344442   1  1222345678999987543 3344677999999999999999964

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.61  E-value=3.3e-08  Score=60.39  Aligned_cols=64  Identities=9%  Similarity=0.113  Sum_probs=45.9

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+.++.+.|-+. .|.+.+.|||++... ..  ..|+.+..+   ....+|.|.+++.+|+|.|.|.+.
T Consensus        23 v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~-~~--~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~   86 (102)
T 2eo1_A           23 AEAGASATLSCEVA-QAQTEVTWYKDGKKL-SS--SSKVRVEAV---GCTRRLVVQQAGQAEAGEYSCEAG   86 (102)
T ss_dssp             EETTCCEEECCBCS-CSSSCCEEEETTEEC-CC--CSSEEEEEE---TTEEEEEETTCCTTTCSCEEEEET
T ss_pred             EeCCCcEEEEEEec-CCCCceEEEECCEEC-CC--CCCEEEEEc---CCEEEEEECCCCcccCEEEEEEcC
Confidence            34566777888887 788999999998542 21  224444321   224689999999999999999884

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=98.61  E-value=9.2e-09  Score=65.08  Aligned_cols=72  Identities=14%  Similarity=0.087  Sum_probs=50.1

Q ss_pred             hhhccceeeEEeecCCCccE-EEEecCCCCcccccccceEEEecCCCC-CCeeeEEEcccCCCCC-EEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPV-YIWYDSYPTHEAEEYKGRISRVDKESP-FGMASLNLTKIRESDQ-GWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~-~~w~k~~~~~~~~~~~~R~~~~~~~~~-~~~~sL~I~~v~~~D~-G~Y~C~~~~~   80 (145)
                      ...+..+.+.|-+.|.|.|. +.|++++.. +......|+.+...... ....+|.|.+++.+|+ |.|.|.|.|.
T Consensus        25 ~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~   99 (122)
T 2cry_A           25 ALHGEKGQIKCFIRSTPPPDRIAWSWKENV-LESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNS   99 (122)
T ss_dssp             CCTTSCCCCCEEECCSSCCSEEEEESSSCE-ECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECS
T ss_pred             EecCCCEEEEEEEeecCCCcEeEEEECCEE-ccCCCCCCEEEEEecCCCceEEEEEEcCCChhhCCceEEEEEECC
Confidence            34567788889999999986 999999854 22222344443211000 1155899999999999 9999999764

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=98.02  E-value=5.1e-09  Score=65.35  Aligned_cols=73  Identities=14%  Similarity=0.188  Sum_probs=52.5

Q ss_pred             HHhhhccceeeEEeecCCCccEEEEecCCC---Cc-c-------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEE
Q psy534            6 AVKSIFQMLSVGDFADDEDIPVYIWYDSYP---TH-E-------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE   74 (145)
Q Consensus         6 ~~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~~-~-------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   74 (145)
                      ..+..+..+.+-|.+.+.+.+.+.||+...   .. +       .....+|+.+..+ ....+.+|.|.+++.+|+|.|+
T Consensus         9 v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~v~~~DsG~Y~   87 (110)
T 1u3h_A            9 LTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFN-KREKKLSLHIADSQPGDSATYF   87 (110)
Confidence            456778888999998877778899998642   10 0       0224567765322 2344679999999999999999


Q ss_pred             EEEEE
Q psy534           75 CKVVF   79 (145)
Q Consensus        75 C~~~~   79 (145)
                      |.+.+
T Consensus        88 C~~~~   92 (110)
T 1u3h_A           88 CAASA   92 (110)
Confidence            99874

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=98.59  E-value=8.6e-08  Score=60.02  Aligned_cols=70  Identities=14%  Similarity=0.222  Sum_probs=49.7

Q ss_pred             HhhhccceeeEEeecCCC------ccEEEEecCCC---Cc--c------cccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            7 VKSIFQMLSVGDFADDED------IPVYIWYDSYP---TH--E------AEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p------~p~~~w~k~~~---~~--~------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      .+..+..+.+-|.+.+.+      .+.+.||+...   ..  +      ...+.+|+.+..   .....+|.|.+++.+|
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D   88 (114)
T 1eeq_A           12 AVSLGERATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSG---SGTDFTLTISSLQAED   88 (114)
T ss_dssp             EECTTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGG
T ss_pred             EEcCCCeEEEEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEee---cCCEEEEEECCCCccc
Confidence            456778888899988766      36789988641   10  0      123456776532   2346789999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|+|.+.+
T Consensus        89 sG~Y~C~~~~   98 (114)
T 1eeq_A           89 VAVYYCQQYY   98 (114)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEEEEEee
Confidence            9999999863

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.59  E-value=9.1e-08  Score=71.34  Aligned_cols=65  Identities=15%  Similarity=0.191  Sum_probs=48.8

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccc-cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAE-EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~-~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+..+.+.|-+.| |.|.+.|++++...... ...+|+.+       .+++|.|.+++.+|+|.|+|.|.+.
T Consensus       258 v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~  323 (361)
T 2xot_A          258 AHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV-------RNGDLFFKKVQVEDGGVYTCYAMGE  323 (361)
T ss_dssp             EETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE-------ETTEEEESSCCTTSCEEEEEEEECS
T ss_pred             ecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe-------ecCeEEEeecCcccCEEEEEEEecC
Confidence            345667788898889 99999999976543222 22335554       2678999999999999999999754

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=1.2e-07  Score=57.95  Aligned_cols=63  Identities=10%  Similarity=0.134  Sum_probs=45.3

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ...+..+.+.|. .+.|.+.+.|+|++.... .  ..|+.+..+   ....+|.|.+++.+|+|.|+|.+
T Consensus        20 v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~-~--~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~~   82 (103)
T 2dku_A           20 VEEKGTAVFTCK-TEHPAATVTWRKGLLELR-A--SGKHQPSQE---GLTLRLTISALEKADSDTYTCDI   82 (103)
T ss_dssp             EETTSEEEEEEE-CSSCCSCCEEEESSCBCC-S--SSSEEEEEE---TTEEEEEEESCCTTTCSEEEEEC
T ss_pred             EeCCCcEEEEEE-eCCCCCeEEEEeCCEECC-C--CCeEEEEeC---CCEEEEEECCCCcccCEEEEEEe
Confidence            345677888888 488889999999986422 1  234444221   23458999999999999999983

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=98.59  E-value=5.9e-08  Score=59.72  Aligned_cols=71  Identities=14%  Similarity=0.126  Sum_probs=45.0

Q ss_pred             hhhccceeeEEeecCCCc---cEEEEecCCCC--------------cccccccceEEEecCCCCCCeeeEEEcccCCCCC
Q psy534            8 KSIFQMLSVGDFADDEDI---PVYIWYDSYPT--------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQ   70 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~---p~~~w~k~~~~--------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   70 (145)
                      +..+..+.+-|.+.+.+.   ..+.|++....              .....+.+|+.+..+ ...++.+|.|.+++.+|+
T Consensus         6 ~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~-~~~~~~sL~I~~v~~~D~   84 (109)
T 2oyp_A            6 VEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGD-LNKGDVSLIIKNVTLDDH   84 (109)
T ss_dssp             ECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSC-GGGTBCCEEECSCCGGGC
T ss_pred             EEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccC-ccCCcEeEEEccCCChhC
Confidence            345566677777664432   23677775421              111234567665322 234578999999999999


Q ss_pred             EEEEEEEEE
Q psy534           71 GWYECKVVF   79 (145)
Q Consensus        71 G~Y~C~~~~   79 (145)
                      |.|+|.+.+
T Consensus        85 G~Y~C~v~~   93 (109)
T 2oyp_A           85 GTYCCRIQF   93 (109)
T ss_dssp             EEEEEEECC
T ss_pred             eEEEEEEEc
Confidence            999999964

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=98.59  E-value=2.1e-07  Score=57.66  Aligned_cols=72  Identities=24%  Similarity=0.332  Sum_probs=50.5

Q ss_pred             HhhhccceeeEEeecCC--CccEEEEecCCC---CcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDE--DIPVYIWYDSYP---THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~--p~p~~~w~k~~~---~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      .+..+.++.+-|.+.+.  +.+.+.||++..   ...-....+|+.+..+ ......+|.|.+++.+|+|.|+|.+.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (108)
T 2coq_A           11 TKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVD-EGSNSASLTIRDLRVEDSGTYKCKAYR   87 (108)
T ss_dssp             EECTTCCEEEEEEECCSSEEEEEEEEEEEETTCCCEEECCCBTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEcCCCCEEEEeEeCCCcCCCCEEEEEEcCCCCCcEEEEEeCCceEEEEc-CCCCEEEEEECCCCcccCEEEEEEEEe
Confidence            35677889999999875  367899998742   1111123456654321 224578999999999999999999975

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=98.59  E-value=7.1e-08  Score=60.99  Aligned_cols=72  Identities=17%  Similarity=0.254  Sum_probs=50.9

Q ss_pred             hhhccceeeEEeecCCC----ccEEEEecCC---CCc---ccccccceEEEecCC--CCCCeeeEEEcccCCCCCEEEEE
Q psy534            8 KSIFQMLSVGDFADDED----IPVYIWYDSY---PTH---EAEEYKGRISRVDKE--SPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p----~p~~~w~k~~---~~~---~~~~~~~R~~~~~~~--~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      +..+..+.+-|.+.+.+    .+.+.||+..   ...   ....+++|+.+..+.  ....+.+|.|.+++.+|+|.|+|
T Consensus        19 v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~g~~~~~~~~~~~~R~~~~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C   98 (120)
T 3noi_A           19 TLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVC   98 (120)
T ss_dssp             EETTSCEEECCEECCCTTSCCCEEEEEEESSCSTTCBCCTTCTTTTTCEECCCHHHHHTTCBCCEEESSCCGGGCEEEEE
T ss_pred             EEcCCCEEEEeeecCCCCCCceeEEEEEeccCCCCceecccccccCCcEEeecccccccCCcEEEEEecCChhhCEEEEE
Confidence            45677888889887554    5679999875   111   123466788763220  03457899999999999999999


Q ss_pred             EEEE
Q psy534           76 KVVF   79 (145)
Q Consensus        76 ~~~~   79 (145)
                      .+..
T Consensus        99 ~v~~  102 (120)
T 3noi_A           99 RVEV  102 (120)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9874

>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1

Probab=98.59  E-value=2e-07  Score=58.99  Aligned_cols=73  Identities=18%  Similarity=0.247  Sum_probs=49.3

Q ss_pred             HhhhccceeeEEeecCCC--ccEEEEecCCC---C------------cccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            7 VKSIFQMLSVGDFADDED--IPVYIWYDSYP---T------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p--~p~~~w~k~~~---~------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      .+..+..+.+-|.+.+.+  ...+.||+...   .            ...+.+++|+.+..+ ...++.+|.|.+++.+|
T Consensus        11 ~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~~~~~D   89 (121)
T 1kxv_C           11 TVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQG-NAKNTAYLQMDSLKPDD   89 (121)
T ss_dssp             EECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEEC-SSTTEEEEEECSCCGGG
T ss_pred             EEcCCCcEEEEEEecCCCcCceEEEEEEeCCCCCCEEEEEEeCCCCeeeCcccCCcEEEEEE-CCCCEEEEEECCCCHHH
Confidence            345667777777776432  45677776531   1            012335678887543 33457899999999999


Q ss_pred             CEEEEEEEEEe
Q psy534           70 QGWYECKVVFL   80 (145)
Q Consensus        70 ~G~Y~C~~~~~   80 (145)
                      +|.|+|.+...
T Consensus        90 sg~Y~C~~~~~  100 (121)
T 1kxv_C           90 TAMYYCKPSLR  100 (121)
T ss_dssp             CEEEEEEEEES
T ss_pred             CEEEEEEEEec
Confidence            99999999753

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=98.58  E-value=1e-07  Score=64.76  Aligned_cols=69  Identities=7%  Similarity=-0.136  Sum_probs=42.2

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ....+..+.+.|.+.+.| +.+.|+|++..........  .....  .....+|.|.+++.+|+|.|.|.+.+.
T Consensus       110 ~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~--~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~  178 (196)
T 2d3v_A          110 VVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDS--QLTPS--GQFQALFPVGPVTPSHRWMLRCYGSRR  178 (196)
T ss_dssp             -------CEEEEEESSCC-SEEEEEEC---CCEEEEEC--EECTT--SCEEEEEECCCCBTTBCEEEEEEEEET
T ss_pred             cccCCCcEEEEEEcCCCC-CEEEEEccCCccccccccc--ccccC--CCceeEEEeeecCcccCeeEEEEEEcc
Confidence            345677888999999998 8999999985421111111  11110  122588999999999999999999864

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=98.57  E-value=1.1e-07  Score=59.28  Aligned_cols=69  Identities=23%  Similarity=0.186  Sum_probs=45.8

Q ss_pred             hhhccceeeEEeec-CCCccEEEEecCCC---C--c-----------ccccc-cceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFAD-DEDIPVYIWYDSYP---T--H-----------EAEEY-KGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~-g~p~p~~~w~k~~~---~--~-----------~~~~~-~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|.+. +.+.+.+.||+...   .  .           ...++ .+|+.+..   ..+..+|.|.+++.+|
T Consensus        11 ~~~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~L~I~~~~~~D   87 (111)
T 2qhl_A           11 VKRGENVTMECSMSKVKDKDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTV---NDQKFDLNIIGTREDD   87 (111)
T ss_dssp             CCTTCCEEECCBCTTCSCGGGEEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEE---SSSBEEEEESSCCGGG
T ss_pred             EeCCCCEEEEEEccCCcccceEEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEEE---cCCeEEEEECCCChhH
Confidence            45566666777666 55556677766431   0  0           01234 67777643   2457899999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|.|.+.+
T Consensus        88 sG~Y~C~~~~   97 (111)
T 2qhl_A           88 GGEYFCGEVE   97 (111)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEcc
Confidence            9999999864

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=1.1e-07  Score=58.97  Aligned_cols=64  Identities=13%  Similarity=0.064  Sum_probs=45.9

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+..+.+.|.+. .|.+.+.|||++.. +..  ..|..+..+   ....+|.|.+++.+|+|.|.|.+.+
T Consensus        26 ~~G~~v~L~C~~~-~p~~~v~W~k~g~~-~~~--~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~n   89 (113)
T 2cpc_A           26 VRLERVVLTCELC-RPWAEVRWTKDGEE-VVE--SPALLLQKE---DTVRRLVLPAVQLEDSGEYLCEIDD   89 (113)
T ss_dssp             ETTCCEEEEEEES-CTTCCCEEEETTEE-CCC--BTTBEEEEC---SSEEEEEESSCCTTTCEEEEEESSS
T ss_pred             EcCCeEEEEEEec-CCCCeEEEEECCEE-Ccc--CCCEEEEEC---CCEEEEEECCCCcccCEEEEEEEec
Confidence            4567788889885 78889999998753 221  234443221   2247899999999999999999854

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S*

Probab=98.57  E-value=8.5e-08  Score=60.54  Aligned_cols=40  Identities=28%  Similarity=0.604  Sum_probs=32.0

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+|++|+.+..+  ..++.+|.|++++.+|+|.|.|.+..
T Consensus        60 ~~~~~~~R~~~~~~--~~~~~sL~I~~v~~~D~G~Y~C~v~~   99 (119)
T 2pnd_A           60 QQAKYRGRLKVSHK--VPGDVSLQINTLQMDDRNHYTCEVTW   99 (119)
T ss_dssp             CSGGGTTTEEECCS--STTBCCEEESSCCGGGCEEEEEEEEE
T ss_pred             ecccccCcEEEccC--CCCCEEEEEccCCcccCEEEEEEEEE
Confidence            34568899987532  24688999999999999999999864

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=98.56  E-value=3.4e-07  Score=58.74  Aligned_cols=74  Identities=19%  Similarity=0.320  Sum_probs=51.6

Q ss_pred             HhhhccceeeEEeecCC--CccEEEEecCCC---CcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec
Q psy534            7 VKSIFQMLSVGDFADDE--DIPVYIWYDSYP---THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN   81 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~--p~p~~~w~k~~~---~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   81 (145)
                      ....+.++.+-|.+.+.  +.+.+.||+...   ...-....+|+....+ ......+|.|++++.+|+|.|+|.+.+..
T Consensus        11 ~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~R~~~~~~-~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~   89 (126)
T 3moq_A           11 TKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVN-KGSKSFSLRISDLRVEDSGTYKCQAFYVF   89 (126)
T ss_dssp             EEETTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEEEEE
T ss_pred             EEeCCCCEEEEEEeecCccCCceEEEEEeCCCCCceEEEEeCCcEEEEEe-CCCCEEEEEECcCChHhCEEEEEEEEEcC
Confidence            45678889999998764  567899998531   1111224566665322 12357899999999999999999997643

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=98.56  E-value=1.8e-07  Score=58.41  Aligned_cols=70  Identities=17%  Similarity=0.151  Sum_probs=49.3

Q ss_pred             HhhhccceeeEEeecCCC-----ccEEEEecCCC---C--cc------cccccceEEEecCCCCCCeeeEEEcccCCCCC
Q psy534            7 VKSIFQMLSVGDFADDED-----IPVYIWYDSYP---T--HE------AEEYKGRISRVDKESPFGMASLNLTKIRESDQ   70 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p-----~p~~~w~k~~~---~--~~------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   70 (145)
                      .+..+..+.+-|.+.+.+     .+.+.||+...   .  .+      ...+.+|+.+..   ...+.+|.|.+++.+|+
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~---~~~~~~L~I~~v~~~Ds   88 (113)
T 1dlf_L           12 PVSLGNQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSG---SGTDFTLKISRVEAEDL   88 (113)
T ss_dssp             EECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEECSCCGGGC
T ss_pred             EEcCCCCEEEEEEccccccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEc---cCCEEEEEECCCChHHC
Confidence            456778888899988665     36788987642   1  00      123456776532   23467899999999999


Q ss_pred             EEEEEEEEE
Q psy534           71 GWYECKVVF   79 (145)
Q Consensus        71 G~Y~C~~~~   79 (145)
                      |.|.|.+.+
T Consensus        89 G~Y~C~~~~   97 (113)
T 1dlf_L           89 GVYFCSQST   97 (113)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEEec
Confidence            999999863

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=98.55  E-value=1.3e-07  Score=63.78  Aligned_cols=66  Identities=15%  Similarity=0.151  Sum_probs=49.2

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcc-cCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTK-IRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~-v~~~D~G~Y~C~~~~~   80 (145)
                      ..+..+.+.|.+.|.|.|.+.|++++... .  ...++.+...   ....+|.|.+ ++.+|+|.|.|.+.+.
T Consensus       117 ~~g~~~~l~C~~~g~p~p~i~W~~~~~~~-~--~~~~~~~~~~---~~~~~L~i~~~~~~~d~G~Y~C~a~N~  183 (197)
T 2j8h_A          117 LRGEVVSIKIPFSGKPDPVITWQKGQDLI-D--NNGHYQVIVT---RSFTSLVFPNGVERKDAGFYVVCAKNR  183 (197)
T ss_dssp             ETTCCCEEEEEEEEESCCEEEEEESSCEE-C--SSSSCEEEEC---SSEEEEECTTCCCGGGCEEEEEEEEET
T ss_pred             eCCCEEEEEEEEEecCCCcEEEEECCEEe-e--cCCCEEEEEc---CCceEEEEeCCCCcccCEeEEEEEEeC
Confidence            34667888899999999999999987542 2  1223333221   3478999999 9999999999999763

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=98.55  E-value=3.2e-07  Score=62.38  Aligned_cols=67  Identities=13%  Similarity=0.046  Sum_probs=48.8

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+..+.+.|-+.|.|.|.+.|++++... ...  .+..+...  .....+|.|.+++.+|+|.|.|.+.+.
T Consensus       130 ~~g~~~~l~C~~~g~p~p~v~W~~~~~~~-~~~--~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~N~  196 (212)
T 2r15_A          130 QEGKALNLTCNVWGDPPPEVSWLKNEKAL-AQT--DHCNLKFE--AGRTAYFTINGVSTADSGKYGLVVKNK  196 (212)
T ss_dssp             ETTCCEEEEEEEECSSCCEEEEEETTEEE-CCC--SSEEEEEE--TTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             ccCCeEEEEEEEcCCCCceEEEEECCeEC-ccC--CCEEEEEc--CCCEEEEEEcCcchHHCeEEEEEEEcC
Confidence            34567788899999999999999998542 211  23333221  123568999999999999999999763

>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B

Probab=98.55  E-value=2.3e-07  Score=58.88  Aligned_cols=71  Identities=20%  Similarity=0.294  Sum_probs=48.2

Q ss_pred             HhhhccceeeEEeecCCC--ccEEEEecCCC---C--c-----------ccccccceEEEecCCCCCCeeeEEEcccCCC
Q psy534            7 VKSIFQMLSVGDFADDED--IPVYIWYDSYP---T--H-----------EAEEYKGRISRVDKESPFGMASLNLTKIRES   68 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p--~p~~~w~k~~~---~--~-----------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~   68 (145)
                      .+..+..+.+-|.+.+.+  ...+.||+...   +  .           ....+++|+.+..+ ...+..+|.|.+++.+
T Consensus        13 ~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~v~~~   91 (121)
T 2xt1_B           13 LVQAGGSLRLSCAASGSFFMSNVMAWYRQAPGKARELIAAIRGGDMSTVYDDSVKGRFTITRD-DDKNILYLQMNDLKPE   91 (121)
T ss_dssp             EEETTCCEEEEEEEESSSCCCSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEE-TTTTEEEEEECSCCGG
T ss_pred             EEeCCCCEEEEEEecCeeccCceEEEEEECCCCCcEEEEEEecCCCcceeCcccCCeEEEEEe-CCCCEEEEEECCCCHH
Confidence            345667777778776432  45677877431   1  0           11235678877543 2345789999999999


Q ss_pred             CCEEEEEEEE
Q psy534           69 DQGWYECKVV   78 (145)
Q Consensus        69 D~G~Y~C~~~   78 (145)
                      |+|.|+|.+.
T Consensus        92 DsG~Y~C~~~  101 (121)
T 2xt1_B           92 DTAMYYCKAS  101 (121)
T ss_dssp             GCEEEEEEET
T ss_pred             HCEEEEEEEE
Confidence            9999999884

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.54  E-value=1e-07  Score=63.68  Aligned_cols=64  Identities=16%  Similarity=0.142  Sum_probs=48.6

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.++.+.|.+.|.|.|.+.|++++... .  ...+..+.     ..+.+|.|.+++.+|+|.|+|.+.+.
T Consensus       111 ~~g~~v~l~C~~~g~p~~~v~W~~~g~~~-~--~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~  174 (189)
T 2v5t_A          111 ERGEEMTFSCRASGSPEPAISWFRNGKLI-E--ENEKYILK-----GSNTELTVRNIINSDGGPYVCRATNK  174 (189)
T ss_dssp             TSCCCEEEECEEEEESCCEEEEEETTEEC-C--CSSSEEEE-----TTTTEEEECSCCGGGCEEEEEEEEET
T ss_pred             cCCCcEEEEEEEccCCCCeEEEEECCEEC-c--CCCcEEEe-----cCCCEEEEcCCChhhCeeEEEEEEeC
Confidence            45677888999999999999999987532 1  12233332     23678999999999999999999753

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=98.54  E-value=3.8e-08  Score=68.00  Aligned_cols=71  Identities=7%  Similarity=-0.055  Sum_probs=44.1

Q ss_pred             HHhhhccceeeEEeecCCCc---cEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            6 AVKSIFQMLSVGDFADDEDI---PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         6 ~~~~~~~~~~~~~w~~g~p~---p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      .....+..+.+.|.+.|.+.   +.+.| ++... ... ..+......+.......+|.|.+++.+|+|.|+|.+.+
T Consensus        14 ~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~~~~~-~~~-~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~~~~   87 (214)
T 1ow0_A           14 EDLLLGSEANLTCTLTGLRDASGVTFTW-TPSSG-KSA-VQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAY   87 (214)
T ss_dssp             HHHHHCSSCCCEEEETTCCSCCCCCCCB-SSCSS-CCC-EECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECC
T ss_pred             HHhccCCCcEEEEEEeeeECCCCeEEEE-cCCCC-CCc-ccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEEEec
Confidence            44677889999999998743   68999 54321 111 00000000000001367899999999999999999853

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.54  E-value=9e-08  Score=72.99  Aligned_cols=64  Identities=16%  Similarity=0.112  Sum_probs=39.1

Q ss_pred             hhccceeeEEeecCCCcc----EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcc---cCCCC---CEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIP----VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTK---IRESD---QGWYECKVV   78 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p----~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~---v~~~D---~G~Y~C~~~   78 (145)
                      ..+.++.+.|-+.|.|.+    .+.|+|++..... ........      ..++.+.|..   +...|   +|.|.|.|.
T Consensus       262 ~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~-~~~~~~~~------~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~  334 (457)
T 1hzh_H          262 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHN-AKTKPREE------QYNSTYRVVSVLTVLHQDWLNGKEYKCKVS  334 (457)
T ss_dssp             CTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECC-CEEEEEEE------CTTSCEEEEEEECCCHHHHHHTCCEEEEEE
T ss_pred             ccCCceEEEEEEEcccCCCCceEEEEEeCCccccc-ccccccee------cCCCcEEEEEEEEECHHHccCCCcEEEEEe
Confidence            457788999999987543    8999999854211 11111111      1234444432   34555   999999997


Q ss_pred             E
Q psy534           79 F   79 (145)
Q Consensus        79 ~   79 (145)
                      +
T Consensus       335 n  335 (457)
T 1hzh_H          335 N  335 (457)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=98.54  E-value=1.6e-07  Score=58.89  Aligned_cols=70  Identities=17%  Similarity=0.197  Sum_probs=46.8

Q ss_pred             HhhhccceeeEEeecCC-CccEEEEecCCC---C------------cccccccceEEEecCCCCCCeeeEEEcccCCCCC
Q psy534            7 VKSIFQMLSVGDFADDE-DIPVYIWYDSYP---T------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQ   70 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~-p~p~~~w~k~~~---~------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   70 (145)
                      .+..+..+.+-|.+.+. +.+.+.||+...   .            ....++.+|+.+..   ...+.+|.|.+++.+|+
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~L~I~~~~~~Ds   88 (115)
T 2otu_A           12 SFSLGASAKLTCTLSSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS---SGADRYLSISNIQPEDE   88 (115)
T ss_dssp             ECCTTCCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECTTCCTTEEEEE---ETTEEEEEESSCCGGGC
T ss_pred             EECCCCCEEEEEEecCCCCCeEEEEEEeCCCCCceEEEEEecCCceecCcccCCCEEEEc---cCCEEEEEECCCChhHC
Confidence            34566777777777643 455677776421   1            11223456777642   23468899999999999


Q ss_pred             EEEEEEEEE
Q psy534           71 GWYECKVVF   79 (145)
Q Consensus        71 G~Y~C~~~~   79 (145)
                      |.|.|.+..
T Consensus        89 g~Y~C~~~~   97 (115)
T 2otu_A           89 AIYICGVGD   97 (115)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEec
Confidence            999999975

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.54  E-value=1.7e-07  Score=63.59  Aligned_cols=67  Identities=16%  Similarity=0.141  Sum_probs=47.9

Q ss_pred             hhccceeeEEe-ecCCCccEEEEecCCC-Cccccccc------ceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDF-ADDEDIPVYIWYDSYP-THEAEEYK------GRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w-~~g~p~p~~~w~k~~~-~~~~~~~~------~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.++.+.|- ..|.|.|.+.|++++. ........      .+...     .....+|.|.+++.+|+|.|.|.+.+.
T Consensus       117 ~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~n~  191 (212)
T 1f97_A          117 TIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI-----DPKSGDLIFDPVTAFDSGEYYCQAQNG  191 (212)
T ss_dssp             ETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEE-----CTTTCCEEESSCCGGGCEEEEEEEECS
T ss_pred             CCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEe-----cCCCceEEEEecChhhCcEEEEEEccc
Confidence            45667888898 6799999999999986 42211110      22222     133788999999999999999999854

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=98.54  E-value=1.2e-07  Score=64.96  Aligned_cols=62  Identities=23%  Similarity=0.230  Sum_probs=47.2

Q ss_pred             hccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+.++.+.|.+.|.|.|.+.|++++.....  ...+..+       .+++|.|.+++.+|+|.|+|.+.+.
T Consensus       124 ~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~N~  185 (212)
T 2yd1_A          124 VGHTVLMTCKAIGNPTPNIYWIKNQTKVDM--SNPRYSL-------KDGFLQIENSREEDQGKYECVAENS  185 (212)
T ss_dssp             TTCCEEECCEEECSSCCEEEEEETTEECCT--TSTTEEE-------ETTEEEECSCCGGGCEEEEEEEEET
T ss_pred             cCCeEEEEEEeccCCCCeEEEEECCeEccc--CCCeEEc-------cCCeEEEccCChhhCEEEEEEeecC
Confidence            466778889999999999999999754221  1223332       2568999999999999999999863

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=98.53  E-value=8.9e-09  Score=61.36  Aligned_cols=56  Identities=16%  Similarity=0.172  Sum_probs=42.7

Q ss_pred             HHhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEccc-CCCCCEEEEEEEE
Q psy534            6 AVKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKI-RESDQGWYECKVV   78 (145)
Q Consensus         6 ~~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v-~~~D~G~Y~C~~~   78 (145)
                      ++.-.+..+.+.|.+.|.|.  ++|+|++... ..              ..+.+|.|.++ +.+|+|.|.|.+.
T Consensus         9 ~v~~~G~~v~L~C~~~g~P~--i~W~kdg~~l-~~--------------~~~~~L~I~~v~~~~DsG~Y~C~A~   65 (82)
T 3r08_E            9 KVSISGTSVELTCPLDSDEN--LKWEKNGQEL-PQ--------------KHDKHLVLQDFSEVEDSGYYVCYTP   65 (82)
T ss_dssp             EEEEETTEEEEECSSCCCSS--CEEEETTEEC-TT--------------CCSSCCBCCSCCTTTTCSCEEEECS
T ss_pred             eEEEcCCeEEEEEECCCCCc--EEEEECCEEC-cC--------------CCCCEEEECccCccCcCEEEEEEEc
Confidence            33445778889999999984  8999987431 11              12678999996 7899999999985

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=98.53  E-value=9.3e-08  Score=60.22  Aligned_cols=39  Identities=26%  Similarity=0.436  Sum_probs=30.5

Q ss_pred             ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           40 EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        40 ~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+++|+.+..+ ...++++|.|.+++.+|+|.|.|.+.+
T Consensus        64 ~~~~~R~~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C~v~~  102 (124)
T 1neu_A           64 GTFKERIQWVGD-PSWKDGSIVIHNLDYSDNGTFTCDVKN  102 (124)
T ss_dssp             STTTTCEEECCB-GGGTBCCEEECSCCGGGCEEEEEEEEC
T ss_pred             ccccCcEEEecC-CcCCeEEEEEccCChhhCEEEEEEEEc
Confidence            356788887432 224578999999999999999999974

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=98.53  E-value=1.3e-07  Score=59.36  Aligned_cols=72  Identities=14%  Similarity=0.132  Sum_probs=48.7

Q ss_pred             HhhhccceeeEEeecCC-CccEEEEecCCC---Cc---------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEE
Q psy534            7 VKSIFQMLSVGDFADDE-DIPVYIWYDSYP---TH---------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWY   73 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~-p~p~~~w~k~~~---~~---------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   73 (145)
                      .+..+..+.+-|.+.+. +.+.+.||+...   ..         ......+|+.+..+ ......+|.|.+++.+|+|.|
T Consensus        11 ~~~~G~~vtL~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~~~~~DsG~Y   89 (116)
T 1fo0_A           11 SVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQ-KPKSSIGLIITATQIEDSAVY   89 (116)
T ss_dssp             EEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEE-GGGTEEEEEECSCCGGGCEEE
T ss_pred             EEecCCcEEEEeEecCCCCCeEEEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEEe-CCCCEEEEEECCCChhhCEEE
Confidence            34567777788887755 555788887531   00         01224577776421 234578999999999999999


Q ss_pred             EEEEEE
Q psy534           74 ECKVVF   79 (145)
Q Consensus        74 ~C~~~~   79 (145)
                      .|.+..
T Consensus        90 ~C~~~~   95 (116)
T 1fo0_A           90 FCAMRG   95 (116)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            999874

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=98.53  E-value=1.5e-07  Score=60.00  Aligned_cols=70  Identities=17%  Similarity=0.203  Sum_probs=49.0

Q ss_pred             HhhhccceeeEEeecCCC----ccEEEEecCCC---Cc--------ccccccceEEEecCCCCCCeeeEEEcccCCCCCE
Q psy534            7 VKSIFQMLSVGDFADDED----IPVYIWYDSYP---TH--------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQG   71 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p----~p~~~w~k~~~---~~--------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G   71 (145)
                      .+..+..+.+-|.+.+.+    .+.+.||+...   ..        ....+.+|+.+..   .....+|.|.+++.+|+|
T Consensus        12 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~---~~~~~sL~I~~v~~~DsG   88 (126)
T 4ffy_L           12 AVSLGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSG---SETDFTLTIDSVETDDAA   88 (126)
T ss_dssp             EEETTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE---ETTEEEEEESSCCGGGCE
T ss_pred             EEeCCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEec---CCCEEEEEECCCCHHHCE
Confidence            356677888889888765    56788988531   10        0123456666532   235789999999999999


Q ss_pred             EEEEEEEE
Q psy534           72 WYECKVVF   79 (145)
Q Consensus        72 ~Y~C~~~~   79 (145)
                      .|+|.+.+
T Consensus        89 ~Y~C~~~~   96 (126)
T 4ffy_L           89 TYYCQQNN   96 (126)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEec
Confidence            99999863

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.52  E-value=2.2e-07  Score=63.10  Aligned_cols=64  Identities=14%  Similarity=0.270  Sum_probs=48.4

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+..+.+.|.+.+.| |.+.|++++... .  ...++.+..     .+.+|.|.+++.+|+|.|+|.+.+.
T Consensus       122 ~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l-~--~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~  185 (208)
T 3r4d_A          122 VKELDSVTLTCLSNDIG-ANIQWLFNSQSL-Q--LTERMTLSQ-----NNSILRIDPIKREDAGEYQCEISNP  185 (208)
T ss_dssp             CCTTCCEEEEEECSCTT-CEEEEEETTEEC-C--CCSSEEEET-----TTTEEEESSCCGGGCEEEEEEEECT
T ss_pred             EeeCCCEEEEEECCCCC-CceEEEECCEeC-C--CCCCeEEcC-----CCCEEEEeccCHHhCeEEEEEEecC
Confidence            34566788899999876 799999987432 1  234555432     2588999999999999999999864

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.52  E-value=1.7e-07  Score=63.12  Aligned_cols=61  Identities=21%  Similarity=0.294  Sum_probs=46.6

Q ss_pred             hccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+..+.+.|.+.|.|.|.+.|++++.. +...    ..+.     ..+.+|.|.+++.+|+|.|+|.+.+.
T Consensus       127 ~g~~~~l~C~~~g~p~p~v~W~~~~~~-~~~~----~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~  187 (201)
T 3s97_C          127 MGQNVTLECFALGNPVPDIRWRKVLEP-MPST----AEIS-----TSGAVLKIFNIQLEDEGIYECEAENI  187 (201)
T ss_dssp             TTCCEEEEEEEEEESCCEEEEEETTBC-CCTT----CEEE-----TTTTEEEECSCCGGGCEEEEEEEEET
T ss_pred             cCCcEEEEEEccCCCCCceEEEeCCCc-CCCc----eeec-----CCCCEEEEccCChhhCEEEEEEEEec
Confidence            456678889999999999999999853 2211    1221     23678999999999999999999763

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.52  E-value=3.2e-07  Score=63.77  Aligned_cols=72  Identities=14%  Similarity=0.198  Sum_probs=50.4

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC-C--c-c-------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP-T--H-E-------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~-~--~-~-------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      ...+..+.+.|.+.|.|.|.+.|||+.. .  . +       .....+|+.+..+ ......+|.|.+++.+|+|.|+|.
T Consensus       139 v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~  217 (238)
T 2p1y_A          139 VWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFN-KREKKLSLHIADSQPGDSATYFCA  217 (238)
T ss_dssp             EETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEE-TTTTEEEEEETTCCGGGCEEEEEE
T ss_pred             EeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEec-CCCCeEEEEEcCCCHHHCEEEEEE
Confidence            3456778888999999999999999642 1  0 0       0112455554311 123468899999999999999999


Q ss_pred             EEEe
Q psy534           77 VVFL   80 (145)
Q Consensus        77 ~~~~   80 (145)
                      +.+.
T Consensus       218 a~n~  221 (238)
T 2p1y_A          218 AIDT  221 (238)
T ss_dssp             EEET
T ss_pred             EeeC
Confidence            9863

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=98.52  E-value=1.5e-07  Score=60.07  Aligned_cols=74  Identities=12%  Similarity=0.100  Sum_probs=47.7

Q ss_pred             HhhhccceeeEEeecCC-CccEEEEecCCCCc---cccc---ccceEEEecCCC--CCCeeeEEEcccCCCCCEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDE-DIPVYIWYDSYPTH---EAEE---YKGRISRVDKES--PFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~-p~p~~~w~k~~~~~---~~~~---~~~R~~~~~~~~--~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      .+..+..+.+-|.+.+. +.+.+.||++....   +...   ...|+....+..  .....+|.|.+++.+|+|.|+|.+
T Consensus        14 ~v~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~li~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~   93 (127)
T 2jju_A           14 SVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVK   93 (127)
T ss_dssp             EEETTSCEEECCEESCCCSCCCEEEEECSSTTCEEEEESSSSCCTTEEEC-------CCBCCEEECSCCGGGCEEEEEEE
T ss_pred             EEeCCCCEEEEEEEeCCCCCCEEEEEecCCCCcEEEEECCCCccCcEEeeEeeeecCCCEEEEEECCCCHHHCEEEEEEE
Confidence            45567788888998865 56789999875321   1100   002444321111  124788999999999999999999


Q ss_pred             EEe
Q psy534           78 VFL   80 (145)
Q Consensus        78 ~~~   80 (145)
                      .+.
T Consensus        94 ~~~   96 (127)
T 2jju_A           94 FRK   96 (127)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            753

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=98.51  E-value=9.1e-08  Score=59.69  Aligned_cols=71  Identities=18%  Similarity=0.186  Sum_probs=46.3

Q ss_pred             hhhccceeeEEeecC-CCccEEEEecCCCC--------------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEE
Q psy534            8 KSIFQMLSVGDFADD-EDIPVYIWYDSYPT--------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGW   72 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g-~p~p~~~w~k~~~~--------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~   72 (145)
                      +..+..+.+-|.+.+ .+.+.+.||+....              .......+|+.+.. +...++.+|.|.+++.+|+|.
T Consensus         9 ~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~sL~I~~v~~~DsG~   87 (116)
T 2or8_A            9 GVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKG-HISEGDVSLTIENSVESDSGL   87 (116)
T ss_dssp             EETTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCS-CGGGTBCCEEESSCCGGGCEE
T ss_pred             EEeCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEec-CCCCCeEEEEECCCCcccCEE
Confidence            445667777777664 33456788876511              01122456776532 123457899999999999999


Q ss_pred             EEEEEEE
Q psy534           73 YECKVVF   79 (145)
Q Consensus        73 Y~C~~~~   79 (145)
                      |+|.+.+
T Consensus        88 Y~C~v~~   94 (116)
T 2or8_A           88 YCCRVEI   94 (116)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEc
Confidence            9999963

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=98.51  E-value=2.2e-07  Score=57.59  Aligned_cols=72  Identities=22%  Similarity=0.184  Sum_probs=49.8

Q ss_pred             HhhhccceeeEEeecCC-CccEEEEecCCCC-----ccc-----ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDE-DIPVYIWYDSYPT-----HEA-----EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~-p~p~~~w~k~~~~-----~~~-----~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      .+..+..+.+-|.+.+. +.+.+.||+....     .+.     ..+.+|+.+..+ ...+..+|.|.+++.+|+|.|+|
T Consensus         7 ~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~~~~~DsG~Y~C   85 (110)
T 2q87_A            7 AGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDS-PANLSFTVTLENLTEEDAGTYWC   85 (110)
T ss_dssp             EECTTSCEEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEE-GGGTEEEEEESSCCGGGCEEEEE
T ss_pred             EEeCCCcEEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEc-CcCCEEEEEEccCCHHHCEEEEE
Confidence            34567788888988753 3467899987521     000     015678876432 22346899999999999999999


Q ss_pred             EEEE
Q psy534           76 KVVF   79 (145)
Q Consensus        76 ~~~~   79 (145)
                      .+..
T Consensus        86 ~~~~   89 (110)
T 2q87_A           86 GVDT   89 (110)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9974

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=98.51  E-value=3.8e-07  Score=57.08  Aligned_cols=72  Identities=21%  Similarity=0.283  Sum_probs=50.5

Q ss_pred             HhhhccceeeEEeecCCC--ccEEEEecCCC---CcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDED--IPVYIWYDSYP---THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p--~p~~~w~k~~~---~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      .+..+.++.+-|.+.+.+  .+.+.||++..   ...-....+|+.+..+ ......+|.|.+++.+|+|.|+|.+.+
T Consensus        11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (113)
T 1sq2_N           11 TKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVN-SGSKSFSLRINDLTVEDGGTYRCGLGV   87 (113)
T ss_dssp             EECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEECB
T ss_pred             EEecCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceEeEEeCCCEEEEEe-CCCCEEEEEECCCChhhCEEEEEEEEe
Confidence            456788999999998654  56799998742   1100112457654321 234578999999999999999999874

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=98.51  E-value=6.3e-07  Score=72.36  Aligned_cols=115  Identities=16%  Similarity=0.174  Sum_probs=79.3

Q ss_pred             cceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEecC-----CC--
Q psy534           12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNR-----SP--   84 (145)
Q Consensus        12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~-----~~--   84 (145)
                      ..+.+.|-+.|.|.|.+.|.+++... ......++.+..  ....+.+|.|..+...|.|.|.|.......     +|  
T Consensus        92 g~l~v~c~~~g~P~p~i~W~k~g~~~-~~~~~~~~~i~~--~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~~  168 (731)
T 2v5y_A           92 GLLNVYVKVNNGPLGNPIWNISGDPT-RTWNRAELAIST--FWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHF  168 (731)
T ss_dssp             EEEEEEEEETTCCCCSEEEEECCCCC-SSCEEEEEEECC--CTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCEE
T ss_pred             ceEEEEEecCCCCccceeEEEeCCcC-CceeEEEEEEee--cCCCceEEEEEEEecCCceEEEEeeEEeeeccccccccc
Confidence            35677888889999999999998542 222234444421  113466788888999999999986543321     11  


Q ss_pred             ----C-CCCCCcEEEEEEeE----------Ee--cCC-----------------cEEEEcccCCCCCeeeEEEEecCCC
Q psy534           85 ----N-SHKNGTWFHLDVHG----------VF--NDG-----------------TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus        85 ----~-~~~~g~~~~l~c~~----------~~--~~~-----------------~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                          + ....|+.+.|.|..          ..  .++                 ..|.|.++..+|+|.|+|.|.|..|
T Consensus       169 ~~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G  247 (731)
T 2v5y_A          169 LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGG  247 (731)
T ss_dssp             CCCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTE
T ss_pred             ccccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCC
Confidence                1 12358899999981          11  111                 3689999999999999999999988

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=98.50  E-value=1.7e-07  Score=60.95  Aligned_cols=70  Identities=14%  Similarity=0.163  Sum_probs=48.8

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCccc-----ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEA-----EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~-----~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+..+.+.|.+.+.|.+.+.|++.+...+.     ....+|+.+...  ...+.+|.|.+++.+|+|.|+|.+.+
T Consensus        50 v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~n  124 (145)
T 1z9m_A           50 VVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTS--TPHELSISISNVALADEGEYTCSIFT  124 (145)
T ss_dssp             EETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEEE--CSSEEEEEECSCCGGGCEEEEEEECS
T ss_pred             EEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEecC--CCCeEEEEECCCChhhCEEEEEEEEc
Confidence            45677888999999988889999954321110     011245554321  23478999999999999999999964

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=98.50  E-value=2.8e-06  Score=58.49  Aligned_cols=118  Identities=19%  Similarity=0.162  Sum_probs=69.4

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC-C----cc------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP-T----HE------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~-~----~~------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      .+..+..+.+-|.+.+.+...+.||+... .    .+      ...+.+|+.+..+ ...++.+|.|++++.+|+|.|+|
T Consensus        11 ~v~~G~~v~L~C~~s~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~v~~~Dsg~Y~C   89 (203)
T 2bnu_A           11 SVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLD-KSSGRSTLYIAASQPGDSATYLC   89 (203)
T ss_dssp             EEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCSEEEETTEEEEEE-TTTTEEEEEESSCCGGGCEEEEE
T ss_pred             EEeCCCCEEEEEEECCCCcceEEEEEeCCCCCcEEEEEECCCCccccCCCeEEEEc-CCCCEEEEEEeeCCcccCeEEEE
Confidence            34567788888888766556788887541 1    00      1135678877533 33557899999999999999999


Q ss_pred             EEEEecCCCCCCCCCcEEEEEEeEE-ecCCcEEEEcccCCCCCeeeEEEEec
Q psy534           76 KVVFLNRSPNSHKNGTWFHLDVHGV-FNDGTELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus        76 ~~~~~~~~~~~~~~g~~~~l~c~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .+............|....|..... ....+.+.+... .+......|.+..
T Consensus        90 ~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~~~-~~~~~~L~C~~~g  140 (203)
T 2bnu_A           90 AVRPTSGGSYIPTFGRGTSLIVHPYIQNPDPAVYQLRR-SKSSDKSVCLFTD  140 (203)
T ss_dssp             EEEECSSSTTCCEECCCEEEEEECCCSSCCCEEEEECC-SSSSSCEEEEEES
T ss_pred             EEEcCcCcceeeeeCCCEEEEEeCCCCCCCCeEEecCC-CCCCcEEEEEccc
Confidence            9975311011112233345544322 112234444322 2235678999876

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=98.49  E-value=2.6e-07  Score=62.63  Aligned_cols=67  Identities=7%  Similarity=0.055  Sum_probs=46.2

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN   81 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   81 (145)
                      ..+.++.+.|.+.+. .+.+.|+|++..........+....     .....|.|.+++.+|+|.|+|.+.+..
T Consensus       112 ~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~~  178 (196)
T 3p2t_A          112 TSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHGAQ-----QHQAEFPMSPVTSVHGGTYRCFSSHGF  178 (196)
T ss_dssp             CTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEEEE-----EEEEEEEECSCCGGGCEEEEEEEECGG
T ss_pred             cCCCeEEEEEecCCC-CCEEEEEeCCCcccceeeccccccc-----CcceEEEeCCCcccCCCeEEEEEEcCC
Confidence            456678888988774 4679999998543221111111111     237889999999999999999998754

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=98.49  E-value=3.2e-07  Score=57.31  Aligned_cols=69  Identities=12%  Similarity=0.063  Sum_probs=47.0

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC---C--cc---------ccccc-ceEEEecCCCCCCeeeEEEcccCCCCCE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP---T--HE---------AEEYK-GRISRVDKESPFGMASLNLTKIRESDQG   71 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~--~~---------~~~~~-~R~~~~~~~~~~~~~sL~I~~v~~~D~G   71 (145)
                      .+..+..+.+-|.+.+.+.+.+.||+...   +  .+         ..+++ +|+.+..+   ..+ +|.|.+++.+|+|
T Consensus        12 ~v~~G~~vtL~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~---~~~-~L~I~~~~~~Dsg   87 (112)
T 1fo0_B           12 LVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRV---TDT-ELRLQVANMSQGR   87 (112)
T ss_dssp             ECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEE---ETT-EEEEEEESCCSCE
T ss_pred             EEecCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEEeCCCceecCccccCCEEEEcC---CCC-eEEEcCCCHhHCE
Confidence            45677788888888765667788887531   1  00         01133 67765432   123 8999999999999


Q ss_pred             EEEEEEEE
Q psy534           72 WYECKVVF   79 (145)
Q Consensus        72 ~Y~C~~~~   79 (145)
                      .|+|.+..
T Consensus        88 ~Y~C~~~~   95 (112)
T 1fo0_B           88 TLYCTCSA   95 (112)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEEEc
Confidence            99999863

>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B

Probab=98.49  E-value=4.4e-07  Score=57.27  Aligned_cols=71  Identities=11%  Similarity=0.097  Sum_probs=47.1

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC---C-------------cccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP---T-------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~---~-------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|.+.+.+  ...+.||+...   .             .....+++|+.+..+ ......+|.|.+++.+|
T Consensus        12 ~~~G~~v~L~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~~~~~D   90 (120)
T 1mfa_H           12 ARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAV-TSTTTAYMELSSLTSED   90 (120)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEE-TTTTEEEEEECSCCGGG
T ss_pred             EeCCCCEEEEEEeeCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEe-CCCCEEEEEECCCCHHH
Confidence            45566677777766432  35677776421   0             012345678877533 33457899999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|+|.+..
T Consensus        91 sg~Y~C~~~~  100 (120)
T 1mfa_H           91 SAVYYCTRGG  100 (120)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEec
Confidence            9999999864

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=98.49  E-value=2.1e-07  Score=62.43  Aligned_cols=66  Identities=12%  Similarity=0.029  Sum_probs=48.0

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+..+.+.|-+.|.|.|.+.|++++... ..  ..+..+..+   ....+|.|.+++.+|+|.|+|.+.+.
T Consensus       116 ~~g~~~~l~C~~~g~p~~~v~W~~~~~~~-~~--~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~n~  181 (194)
T 2a38_A          116 RQGSQVRLQVRVTGIPTPVVKFYRDGAEI-QS--SLDFQISQE---GDLYSLLIAEAYPEDSGTYSVNATNS  181 (194)
T ss_dssp             CTTEEEEEEEEEEEESCCEEEEEETTEEC-CC--SSSEEEEEE---TTEEEEEEEEECGGGCEEEEEEEEET
T ss_pred             cCCCEEEEEEEEEEecCCeEEEEECCEEC-CC--CCcEEEEEc---CCEEEEEECCCChhcCeEEEEEEEeC
Confidence            34567788899999999999999987542 21  223333221   22458999999999999999999763

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=98.48  E-value=1.4e-07  Score=66.77  Aligned_cols=70  Identities=16%  Similarity=0.053  Sum_probs=42.5

Q ss_pred             hhccceeeEEeecCC---C-ccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDE---D-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~---p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.++.+.|.+.|.   | ...+.|++++..... ....+.....+..-.....|.|......|.|.|.|++.+
T Consensus        37 ~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~-~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h  110 (240)
T 4acp_A           37 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHN-AKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSN  110 (240)
T ss_dssp             SSSSCCEEEEEEESCCC--CCCEEEEEETTEEECC-CEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEEC
T ss_pred             ccCCCcEEEEEEeccccCCCccEEEEEECCcccCC-ceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEc
Confidence            357789999999975   3 337999999754211 111111110000001145688888888899999999965

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=98.48  E-value=2.8e-07  Score=59.53  Aligned_cols=68  Identities=21%  Similarity=0.355  Sum_probs=48.1

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC--C-cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP--T-HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~--~-~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ....+..+.+-|.+.+.  +.+.||++..  . ..-....+|+....+   ....+|.|.+++.+|+|.|+|.+.+
T Consensus        28 ~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~~~~r~~~~~~---~~~~~L~I~~~~~~DsG~Y~C~a~n   98 (133)
T 3khq_A           28 AKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVSEEGRIVQTQN---GSVYTLTIQNIQYEDNGIYFCKQKC   98 (133)
T ss_dssp             EECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECCCTTTTEEEEEE---TTEEEEEECSCCGGGCEEEEEEESS
T ss_pred             EEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEEeCCCEEEEcC---CCEEEEEECCCChHHCEEEEEEEEe
Confidence            34567788889999877  7899998742  1 000113466665432   2467899999999999999999964

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.48  E-value=2.6e-07  Score=70.42  Aligned_cols=65  Identities=23%  Similarity=0.273  Sum_probs=49.0

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCccc-ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEA-EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~-~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.++.+.|.+ +.|.|.+.|+++++.... ....+|+...      .+++|.|.+++.+|+|.|+|.|.+.
T Consensus       354 ~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~~~~------~~~~L~I~~v~~~D~G~Y~C~a~N~  419 (440)
T 3zyj_A          354 TEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVL------SDGTLNFTNVTVQDTGMYTCMVSNS  419 (440)
T ss_dssp             CTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCCSSEEEC------TTCCEEESSCCSTTCEEEEEEEECS
T ss_pred             ccCceEEEEeec-CCCCCceEEEeCCCceeeccCCCceEEEc------cCCeEEEccCChhhCEEEEEEEEcC
Confidence            456677788888 578999999996654332 2344566652      3678999999999999999999753

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=98.48  E-value=4e-07  Score=61.75  Aligned_cols=68  Identities=10%  Similarity=0.066  Sum_probs=43.8

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN   81 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   81 (145)
                      ..+..+.+.|.+.|. .+.+.|+|++........  +.....+  ......|.|.+++.+|+|.|.|.+.+..
T Consensus       113 ~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~--~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~n~~  180 (198)
T 1ugn_A          113 NSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCL--NSQPHAR--GSSRAIFSVGPVSPSRRWWYRCYAYDSN  180 (198)
T ss_dssp             ETTCCEEEEEECSSC-CSEEEEEEC------CEE--EC--------CCEEEEEECCCCTTSCEEEEEEEECTT
T ss_pred             CCCCcEEEEEecCCC-CcEEEEEECCCccCCccc--cccccCC--CcceeEEEecccCcccCeEEEEEEEeCC
Confidence            456778889999888 789999999854211111  1111100  1125889999999999999999998643

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=98.48  E-value=2.3e-07  Score=58.60  Aligned_cols=70  Identities=17%  Similarity=0.162  Sum_probs=48.5

Q ss_pred             HhhhccceeeEEeecCCC---ccEEEEecCCCC-----c------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEE
Q psy534            7 VKSIFQMLSVGDFADDED---IPVYIWYDSYPT-----H------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGW   72 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p---~p~~~w~k~~~~-----~------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~   72 (145)
                      .+..+..+.+-|.+.+.+   .+.+.||+...-     .      ....+.+|+.+..   .....+|.|.+++.+|+|.
T Consensus        11 ~~~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~---~~~~~~L~I~~~~~~DsG~   87 (120)
T 1oaq_L           11 TTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL---IGNKAALTITGAQTEDEAI   87 (120)
T ss_dssp             EECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEE---ETTEEEEEEESCCGGGCEE
T ss_pred             EEcCCCCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEec---CCCeEEEEECCCChhhCeE
Confidence            345677888888887654   567888875320     0      1122456776542   1346799999999999999


Q ss_pred             EEEEEEE
Q psy534           73 YECKVVF   79 (145)
Q Consensus        73 Y~C~~~~   79 (145)
                      |+|.+..
T Consensus        88 Y~C~~~~   94 (120)
T 1oaq_L           88 YFCALWY   94 (120)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEcc
Confidence            9999864

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=98.48  E-value=2.4e-07  Score=57.79  Aligned_cols=71  Identities=18%  Similarity=0.272  Sum_probs=48.9

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC---Cc-c-------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP---TH-E-------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~~-~-------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      .+..+..+.+-|.+.+.+.+.+.||+...   .. +       .....+|+.+..+ ......+|.|.+++.+|+|.|+|
T Consensus        11 ~~~~G~~v~L~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~~~~~DsG~Y~C   89 (112)
T 2z35_A           11 ALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYN-KEATSFHLQKASVQESDSAVYYC   89 (112)
T ss_dssp             EEETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECB-TTTTBCCEEESSCCSTTCSEEEE
T ss_pred             EEcCCCCEEEEEEECCCCCCeEEEEEECCCCCcEEeEEEecccCCccCCCEEEEEc-CCCCEEEEEECCCChhhCEEEEE
Confidence            34567777888887766667788887542   10 0       0113567776422 33457899999999999999999


Q ss_pred             EEE
Q psy534           76 KVV   78 (145)
Q Consensus        76 ~~~   78 (145)
                      .+.
T Consensus        90 ~~~   92 (112)
T 2z35_A           90 ALS   92 (112)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            986

>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A*

Probab=98.47  E-value=3.6e-07  Score=57.37  Aligned_cols=39  Identities=18%  Similarity=0.417  Sum_probs=31.4

Q ss_pred             ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           40 EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        40 ~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+++|+.+..+ ...++.+|.|.+++.+|+|.|.|.+..
T Consensus        62 ~~~~~R~~~~~~-~~~~~~sL~I~~v~~~Dsg~Y~C~v~~  100 (119)
T 1qfo_A           62 KRFRGRAELMGN-MDHKVCNLLLKDLKPEDSGTYNFRFEI  100 (119)
T ss_dssp             TTTTTTEEECSC-GGGTBCCEEECSCCGGGCEEEEEEEEC
T ss_pred             ccceeeEEEeCC-CCCCEEEEEEccCCcccCceEEEEEEe
Confidence            457789987543 234688999999999999999999863

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.47  E-value=5.5e-07  Score=60.22  Aligned_cols=55  Identities=16%  Similarity=0.147  Sum_probs=45.7

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.++.+.|.+.+.|.|.+.|++++...         .       ....+|.|.+++.+|+|.|+|.+.+
T Consensus       110 ~~g~~~~l~C~~~~~p~~~v~W~~~~~~~---------~-------~~~~~L~i~~v~~~d~G~Y~C~a~n  164 (184)
T 2ny1_B          110 LQGQSLTLTLESPPGSSPSVQCRSPRGKN---------I-------QGGKTLSVSQLELQDSGTWTCTVLQ  164 (184)
T ss_dssp             ETTCCEEEEEECCTTCCCEEEEECTTSCE---------E-------EESSEEEESSCCGGGCEEEEEEEEE
T ss_pred             ecCCCEEEEEEcCCCCCCEEEEEeCCCcc---------c-------cCceEEEEecCCcCCCeEEEEEEEE
Confidence            45667889999999999999999987431         1       1278899999999999999999974

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.47  E-value=2e-07  Score=65.84  Aligned_cols=70  Identities=19%  Similarity=0.345  Sum_probs=49.7

Q ss_pred             hhccceeeEEee---cCCCccEEEEecCCCCc-------------------ccccccceEEEecCCCCCCeeeEEEcccC
Q psy534            9 SIFQMLSVGDFA---DDEDIPVYIWYDSYPTH-------------------EAEEYKGRISRVDKESPFGMASLNLTKIR   66 (145)
Q Consensus         9 ~~~~~~~~~~w~---~g~p~p~~~w~k~~~~~-------------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~   66 (145)
                      ..+.++.+.|.+   .+.|.|.+.|++++...                   ....|..|+.+..+ ....+.+|.|.+++
T Consensus       131 ~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~i~~v~  209 (268)
T 3mj6_A          131 RVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGD-ISRNDGSIKLQTVK  209 (268)
T ss_dssp             ETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSC-GGGTBCCEEECSCC
T ss_pred             ccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeecc-CCCCeEEEEECcCC
Confidence            356677888988   57799999999853211                   11234556555321 22457899999999


Q ss_pred             CCCCEEEEEEEEE
Q psy534           67 ESDQGWYECKVVF   79 (145)
Q Consensus        67 ~~D~G~Y~C~~~~   79 (145)
                      .+|+|.|.|.+.+
T Consensus       210 ~~D~G~Y~C~a~n  222 (268)
T 3mj6_A          210 ESDQGIYTCSIYV  222 (268)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             hhhCeEEEEEEEc
Confidence            9999999999975

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=98.47  E-value=1.6e-07  Score=62.87  Aligned_cols=62  Identities=16%  Similarity=0.181  Sum_probs=47.3

Q ss_pred             hccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+.++.+.|.+.|.|.+.+.|++++... .  ...+...      ..+++|.|.+++.+|+|.|+|.+.+.
T Consensus       114 ~g~~~~l~C~~~g~p~~~v~W~~~~~~~-~--~~~~~~~------~~~~~L~i~~~~~~d~G~Y~C~a~n~  175 (192)
T 2iep_A          114 EGLKAVLPCTTMGNPKPSVSWIKGDSAL-R--ENSRIAV------LESGSLRIHNVQKEDAGQYRCVAKNS  175 (192)
T ss_dssp             TTSCEEECCEEEEESCCEEEEEETTEEC-C--CCSSEEE------CTTSCEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCcEEEEEEEeccCCceEEEEeCCEEc-c--CCCcEEE------ecCCcEEEecCChhhCEEEEEEEEcC
Confidence            4566778898889999999999987532 1  1234443      23568999999999999999999864

>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}

Probab=98.47  E-value=1.2e-06  Score=62.35  Aligned_cols=21  Identities=19%  Similarity=0.398  Sum_probs=19.6

Q ss_pred             eeeEEEcccCCCCCEEEEEEE
Q psy534           57 MASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        57 ~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      +.+|.|++++.+|++.|+|..
T Consensus        70 ~ftLtIs~lq~eD~A~YyC~~   90 (259)
T 4f9l_D           70 GFTLTISSLQPEDIATYYCQQ   90 (259)
T ss_dssp             EEEEEEESCCGGGCEEEEEEE
T ss_pred             eEEEEEcccChhhCEEEEEee
Confidence            678999999999999999976

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=98.46  E-value=7.3e-08  Score=60.33  Aligned_cols=37  Identities=24%  Similarity=0.264  Sum_probs=28.7

Q ss_pred             cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           41 EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        41 ~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      .+.+|+.+.. +...++.+|.|.+++.+|+|.|+|.+.
T Consensus        58 ~~~~r~~~~~-~~~~~~~sL~I~~v~~~DsG~Y~C~v~   94 (115)
T 2or7_A           58 QRNSRYQLKG-NISEGNVSLTIENTVVGDGGPYCCVVE   94 (115)
T ss_dssp             ESSTTEECCS-CGGGTBCCEEESSCCGGGCEEEEEEEC
T ss_pred             ccCccEEEec-CccCCeEEEEEccCCHHHCEEEEEEEE
Confidence            3567777532 233457899999999999999999986

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.46  E-value=2.5e-07  Score=62.74  Aligned_cols=63  Identities=10%  Similarity=0.061  Sum_probs=46.1

Q ss_pred             hhccceeeEEee-cCCCccEEEEecCCCC-cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFA-DDEDIPVYIWYDSYPT-HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~-~g~p~p~~~w~k~~~~-~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+..+.+.|.+ .|.|.|.+.|++++.. .+...   + ..     ...+++|.|.+++.+|+|.|+|.|.+.
T Consensus       134 ~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~---~-~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~N~  198 (214)
T 3jz7_A          134 EIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTP---W-LA-----EMTSPVISVKNASSEYSGTYSCTVQNR  198 (214)
T ss_dssp             BTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGG---G-GG-----GTTSSEEEECSCCGGGCEEEEEEEECS
T ss_pred             ecCCcEEEEecCCCCCCCCEEEEEECCCCCccCcc---c-ee-----ccCCCEEEEecCCHHHCEEEEEEEEcC
Confidence            456678899999 6999999999996432 11111   1 11     123669999999999999999999753

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.46  E-value=2e-07  Score=60.05  Aligned_cols=73  Identities=15%  Similarity=0.173  Sum_probs=47.0

Q ss_pred             HhhhccceeeEEeecCC-CccEEEEecCCCCcccccc--c----ceEEEecCCC--CCCeeeEEEcccCCCCCEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDE-DIPVYIWYDSYPTHEAEEY--K----GRISRVDKES--PFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~-p~p~~~w~k~~~~~~~~~~--~----~R~~~~~~~~--~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      .+..+..+.+-|.+.+. +.+.+.||++.......-+  .    +|+....+..  ...+.+|.|.+++.+|+|.|+|.+
T Consensus        19 ~v~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~   98 (136)
T 2d9c_A           19 SVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVK   98 (136)
T ss_dssp             EEETTSCEEECCEESCCCSCCCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCTTTCEEEEEEE
T ss_pred             EEcCCCCEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCHHHCEEEEEEE
Confidence            34567778888888765 5667899987632100000  0    2443322111  123688999999999999999998


Q ss_pred             EE
Q psy534           78 VF   79 (145)
Q Consensus        78 ~~   79 (145)
                      .+
T Consensus        99 ~~  100 (136)
T 2d9c_A           99 FR  100 (136)
T ss_dssp             EE
T ss_pred             Ee
Confidence            75

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.45  E-value=5.2e-07  Score=63.51  Aligned_cols=71  Identities=18%  Similarity=0.185  Sum_probs=50.4

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC--Cc--------------ccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP--TH--------------EAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~--~~--------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      ...+.++.+.|.+.+.+  .+.+.||++..  ..              ....+.+|+.+..+ ......+|.|.+++.+|
T Consensus       146 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~v~~~D  224 (256)
T 3ux9_B          146 VQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRD-NSKNTLYLQMNSLRAED  224 (256)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEE-TTTTEEEEEECSCCGGG
T ss_pred             EcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEec-CCCCEEEEEECCCChhh
Confidence            34567788889998876  78999998631  11              01234457765432 12346779999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|+|.+.+
T Consensus       225 sG~Y~C~~~~  234 (256)
T 3ux9_B          225 TAVYYCARYI  234 (256)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEEc
Confidence            9999999986

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=98.45  E-value=3.8e-07  Score=56.78  Aligned_cols=72  Identities=19%  Similarity=0.147  Sum_probs=48.7

Q ss_pred             HhhhccceeeEEeecCC-CccEEEEecCCCC-----cc------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEE
Q psy534            7 VKSIFQMLSVGDFADDE-DIPVYIWYDSYPT-----HE------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE   74 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~-p~p~~~w~k~~~~-----~~------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   74 (145)
                      .+..+..+.+-|.+.+. ....+.||+....     .+      ...+.+|+.+..+ ...+..+|.|.+++.+|+|.|+
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~~~~~DsG~Y~   90 (113)
T 1zox_A           12 SGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDN-QRDFIFTVTMEDLRMSDAGIYW   90 (113)
T ss_dssp             EEETTSCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEE-TTTTEEEEEECSCCGGGCEEEE
T ss_pred             EEeCCCcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEEC-CcCCEEEEEEccCCHHHCEEEE
Confidence            34566777788887643 2335788876521     00      1235678876532 3455789999999999999999


Q ss_pred             EEEEE
Q psy534           75 CKVVF   79 (145)
Q Consensus        75 C~~~~   79 (145)
                      |.+..
T Consensus        91 C~v~~   95 (113)
T 1zox_A           91 CGITK   95 (113)
T ss_dssp             EEECC
T ss_pred             EeeEc
Confidence            99863

>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule, IGV, immunoglobulin variable, IGC, immunoglobulin constant, signaling protein; 2.04A {Homo sapiens}

Probab=98.45  E-value=6.7e-07  Score=56.02  Aligned_cols=59  Identities=17%  Similarity=0.178  Sum_probs=41.0

Q ss_pred             eeeEEeecCCCccEEEEecCCC------CcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           14 LSVGDFADDEDIPVYIWYDSYP------THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        14 ~~~~~w~~g~p~p~~~w~k~~~------~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.|..+.  ....++++..      ...++.|++|+.+.     .++++|.|.|++.+|+|.|.|++..
T Consensus        29 ~~~i~W~~~~--~ia~~~~~~~~~~~~~~~~~~~f~~Rl~l~-----~~~~SL~I~nl~~~DsG~Y~c~i~~   93 (111)
T 2pkd_A           29 VKIIAWTSKT--SVAYVTPGDSETAPVVTVTHRNYYERIHAL-----GPNYNLVISDLRMEDAGDYKADINT   93 (111)
T ss_dssp             EEEEEEESSS--EEEEEECCCSSSCCEEEECSGGGTTCEEEC-----TTTCCEEECSCCGGGCEEEEEEEEE
T ss_pred             eeEEEEecCC--EEEEEECCCCCCcceeEEeCCCcCCcEEEe-----CCCEEEEECCCCHHHCEEEEEEEEe
Confidence            4456677432  3333333332      12356799999984     3489999999999999999999963

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=98.45  E-value=2.4e-07  Score=60.94  Aligned_cols=70  Identities=16%  Similarity=0.152  Sum_probs=50.3

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC---Cc--c------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP---TH--E------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~~--~------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      ++..+.++.+-|.+.+.+.+.+.||+...   ..  +      ...+.+|+.+..   .....+|.|.+++.+|+|.|+|
T Consensus        27 ~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~---~~~~~sL~I~~v~~~DsG~Y~C  103 (146)
T 2yc1_B           27 SVSPGERATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSG---SGTDFTLTISSLEPEDFAIYYC  103 (146)
T ss_dssp             EECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCSEEEE
T ss_pred             EEecCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEec---CCCEEEEEECCCCHHHCEEEEE
Confidence            45677888899998877777889998642   10  0      112456776532   2346789999999999999999


Q ss_pred             EEEE
Q psy534           76 KVVF   79 (145)
Q Consensus        76 ~~~~   79 (145)
                      .+.+
T Consensus       104 ~~~~  107 (146)
T 2yc1_B          104 QQYR  107 (146)
T ss_dssp             EECS
T ss_pred             EEec
Confidence            9863

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=98.45  E-value=1.9e-07  Score=58.80  Aligned_cols=74  Identities=14%  Similarity=0.091  Sum_probs=46.6

Q ss_pred             HhhhccceeeEEeecCC-CccEEEEecCCCC---cccc---cccceEEEecC--CCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDE-DIPVYIWYDSYPT---HEAE---EYKGRISRVDK--ESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~-p~p~~~w~k~~~~---~~~~---~~~~R~~~~~~--~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      .+..+..+.+-|.+.+. +.+.+.||++...   .+..   ....|+....+  .......+|.|.+++.+|+|.|+|.+
T Consensus        18 ~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~   97 (120)
T 2yz1_A           18 SVAAGDSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIRISNVTPEDAGTYYCVK   97 (120)
T ss_dssp             EECTTCCEEECCEESCCCSCCCEEEEESSSTTCEEEEEECEECTTTCCSEEECCBSSTTBCCEEECSCCGGGCEEEEEEE
T ss_pred             EEeCCCCEEEEeEECCCCCCcEEEEEcCCCCCcEEEEEcCCcccCcccceeeccccCCCeEEEEECCCCHHHCEEEEEEE
Confidence            34567788888988764 6678999987522   1100   00012222111  01133578999999999999999999


Q ss_pred             EEe
Q psy534           78 VFL   80 (145)
Q Consensus        78 ~~~   80 (145)
                      .+.
T Consensus        98 ~~~  100 (120)
T 2yz1_A           98 FQK  100 (120)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            753

>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A

Probab=98.44  E-value=8.9e-07  Score=56.07  Aligned_cols=71  Identities=17%  Similarity=0.174  Sum_probs=47.0

Q ss_pred             hhhccceeeEEeecCC--CccEEEEecCCC---C-------------cccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDE--DIPVYIWYDSYP---T-------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~--p~p~~~w~k~~~---~-------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|.+.+.  ....+.||+...   +             .....+++|+.+..+ ......+|.|.+++.+|
T Consensus        14 ~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~~~~~D   92 (123)
T 2p45_B           14 VQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRMTISRD-KGKNTVYLQMDSLKPED   92 (123)
T ss_dssp             EETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECTTTBTTEEEECC-TTSSEEEEEESSCCGGG
T ss_pred             EeCCCCEEEEEEecCccCcCcEEEEEEECCCCCcEEEEEEecCCCceEeCcccCCeEEEEEe-CCCCEEEEEECCCCHHH
Confidence            4456667777776643  245677776431   1             011235678887543 23457899999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|+|.+..
T Consensus        93 sg~Y~C~~~~  102 (123)
T 2p45_B           93 TATYYCAAGG  102 (123)
T ss_dssp             CEEEEEEESS
T ss_pred             CEEEEEEEEe
Confidence            9999998863

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.44  E-value=3.2e-06  Score=65.72  Aligned_cols=70  Identities=7%  Similarity=-0.030  Sum_probs=44.4

Q ss_pred             hccceeeEEeecCC-C-ccEEEEecCCCCcccccccceEEEecCCCC-CCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFADDE-D-IPVYIWYDSYPTHEAEEYKGRISRVDKESP-FGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~g~-p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~-~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+..+.+.|.+.|. | ...+.|++++.... ............+.. .....|.|..+..+|.|.|.|++.+.
T Consensus       311 ~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~-~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~  383 (512)
T 1zvo_C          311 LRDKATFTCFVVGSDLKDAHLTWEVAGKVPT-GGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHP  383 (512)
T ss_pred             cCCceEEEEEEeceECCCeEEEEEECCEecc-CceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeC
Confidence            46788899999986 4 23899999985422 111111011001000 11456999999999999999999764

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=98.44  E-value=7.4e-07  Score=57.12  Aligned_cols=72  Identities=17%  Similarity=0.163  Sum_probs=47.5

Q ss_pred             HhhhccceeeEEeecCCC-ccEEEEecCCC---Cc---------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEE
Q psy534            7 VKSIFQMLSVGDFADDED-IPVYIWYDSYP---TH---------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWY   73 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p-~p~~~w~k~~~---~~---------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   73 (145)
                      .+..+..+.+-|.+.+.. ...+.||+...   ..         ....+.+|+.+..+ ......+|.|.+++.+|+|.|
T Consensus        12 ~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~-~~~~~~sL~I~~~~~~Dsg~Y   90 (129)
T 3rrq_A           12 VVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQL-PNGRDFHMSVVRARRNDSGTY   90 (129)
T ss_dssp             EEETTSCEEEEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEEC-TTSSEEEEEESSCCGGGCEEE
T ss_pred             EEeCCCCEEEEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEc-CCCCEEEEEECCCChhHCEEE
Confidence            345677888888887653 45678886421   10         01224567776422 234578999999999999999


Q ss_pred             EEEEEE
Q psy534           74 ECKVVF   79 (145)
Q Consensus        74 ~C~~~~   79 (145)
                      +|.+.+
T Consensus        91 ~C~~~~   96 (129)
T 3rrq_A           91 LCGAIS   96 (129)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999975

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=98.44  E-value=5.2e-07  Score=57.36  Aligned_cols=72  Identities=22%  Similarity=0.296  Sum_probs=50.2

Q ss_pred             HhhhccceeeEEeecCC--CccEEEEecCCC---CcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDE--DIPVYIWYDSYP---THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~--p~p~~~w~k~~~---~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      .+..+..+.+-|.+.+.  +.+.+.||+...   ...-....+|+....+ ......+|.|.+++.+|+|.|+|.+..
T Consensus        11 ~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (121)
T 2i24_N           11 TKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVN-RGSKSFSLRINDLTVKDSGTYRCKPES   87 (121)
T ss_dssp             EEETTCCEEEEEEECSCCCCEEEEEEEEECTTCSCCEEECSBTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEecCCcEEEEeEccCCCCCCCEEEEEEeCCCCCceeeEecCCCeEEEec-CCCCEEEEEECCCChhhCEEEEEEEec
Confidence            45678899999998765  457899998752   1110112456654321 234578999999999999999999874

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=98.44  E-value=3e-07  Score=62.86  Aligned_cols=66  Identities=17%  Similarity=0.183  Sum_probs=47.9

Q ss_pred             hhccceeeEEee-cCCCccEEEEecCCCCcccc-----cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFA-DDEDIPVYIWYDSYPTHEAE-----EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~-~g~p~p~~~w~k~~~~~~~~-----~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.++.+.|-+ .|.|.|.+.|++++......     ....|....      .+++|.|.+++.+|+|.|.|.+.+.
T Consensus       121 ~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~a~N~  192 (217)
T 2vr9_A          121 AKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV------DGGNLLISNVEPIDEGNYKCIAQNL  192 (217)
T ss_dssp             CTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEE------TTTEEEESSCCSTTCEEEEEEEEET
T ss_pred             cCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEec------CCCcEEEeeCCHHHCeEEEEEEEcc
Confidence            345677888888 78899999999987532111     122344432      2568999999999999999999864

>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C

Probab=98.44  E-value=9.7e-07  Score=55.97  Aligned_cols=36  Identities=17%  Similarity=0.111  Sum_probs=28.4

Q ss_pred             cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           41 EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        41 ~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      .+.+|+.+..  ....+.+|.|.+++.+|+|.|+|.+.
T Consensus        59 ~~~~R~~~~~--~~~~~~sL~I~~v~~~DsG~Y~C~~~   94 (121)
T 2oi9_C           59 DIPDGYKASR--PSQENFSLTLESATPSQTSVYFCASG   94 (121)
T ss_dssp             SSCTTEEEEC--CSSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             ccCCCeEEEc--CCCCEEEEEECCCCHHHCEEEEEEEc
Confidence            4567877643  23346899999999999999999986

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=98.43  E-value=2.4e-07  Score=57.28  Aligned_cols=64  Identities=9%  Similarity=0.063  Sum_probs=46.4

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +...+.++.+.|...+.+ ..+.|||++...    ..+|..     ......+|.|.+++.+|+|.|+|.+.+.
T Consensus        15 ~v~~G~~VtL~C~~~~~~-~~~~w~k~g~~~----~~~~~~-----~~~~~~~l~I~~v~~~dsG~Y~C~~~n~   78 (105)
T 2vsd_A           15 GVSLGDTVTLRCHLPRMA-AWVQLWLNGTLR----FDKEKD-----KEQDAAEFSFAVTNLEDAGTYQCRYQVS   78 (105)
T ss_dssp             SCCTTCEEEEEEECCSSC-EEEEEEETTEEE----EEEEEC-----TTCSEEEEEEECCSGGGCEEEEEEEEEE
T ss_pred             CcCcCCCEEEEEEcCCCC-cEEEEEECCccc----eeeecc-----CCCCEEEEEECCCCHHHCeEEEEEEEcC
Confidence            345678889999887654 678899987431    112221     1234788999999999999999999864

>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B

Probab=98.43  E-value=3.6e-07  Score=57.62  Aligned_cols=71  Identities=18%  Similarity=0.209  Sum_probs=46.5

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC---C-------------cccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP---T-------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~---~-------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|.+.+.+  ...+.||+...   .             .....+++|+.+..+ ...++.+|.|.+++.+|
T Consensus        12 ~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~~~~~D   90 (120)
T 1n4x_H           12 KKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLD-TSTSTAFLQINNLKNED   90 (120)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEE-GGGTEEEEEECSCCGGG
T ss_pred             EcCCCeEEEEEEecCcccCCcEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEe-CCCCEEEEEECCCCHHH
Confidence            45566677777766432  34567776531   0             011345678876532 22457899999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|+|.+..
T Consensus        91 sG~Y~C~~~~  100 (120)
T 1n4x_H           91 TATYFCVRDR  100 (120)
T ss_dssp             CEEEEEEEES
T ss_pred             CEEEEEEEEc
Confidence            9999999973

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=98.43  E-value=5.2e-07  Score=56.25  Aligned_cols=75  Identities=17%  Similarity=0.124  Sum_probs=50.9

Q ss_pred             hHHHhhhccceeeEEeecC-CCccEEEEecCCCCc---ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            4 SFAVKSIFQMLSVGDFADD-EDIPVYIWYDSYPTH---EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         4 ~~~~~~~~~~~~~~~w~~g-~p~p~~~w~k~~~~~---~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      |-.++..+.++-+-|-+++ .|.|.++|.|-+...   +......+....+. ....-..|.|.+|..+|+|.|+|.|.+
T Consensus        22 S~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~-~n~s~fiL~f~~V~~sDsG~YrCsAn~  100 (122)
T 1xau_A           22 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEEN-RSVPVFVLHFKPIHLSDNGSYSCSTNF  100 (122)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECS-SSSCEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             ccEEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecceecc-CCceeEEEEEeeEEEcCCccEEEEeeC
Confidence            4445667888889999974 689999999976421   11112222233211 112356799999999999999999975

>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C

Probab=98.42  E-value=5.8e-07  Score=56.36  Aligned_cols=71  Identities=18%  Similarity=0.161  Sum_probs=46.8

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC---C-------------cccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP---T-------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~---~-------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|.+.+.+  ...+.||+...   +             .....+++|+.+..+ ...++.+|.|.+++.+|
T Consensus        12 ~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~~~~~D   90 (117)
T 2yc1_A           12 VQPGGSLRLSCTGSGFTFDNYAMHWLRQVPGEGLEWVSGISRSSGDIDYADSVKGRFTISRD-DAKKTLSLQMNSLRAED   90 (117)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECGGGTTTEEEEEE-TTTTEEEEEECSCCGGG
T ss_pred             EcCCCeEEEEEEecCcccCCCeEEEEEECCCCCcEEEEEEccCCCceeeCcccCCeEEEEEe-CCCCEEEEEECCCCHHH
Confidence            44566677777765432  34567776431   0             111335678887543 23457899999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|+|.+..
T Consensus        91 sg~Y~C~~~~  100 (117)
T 2yc1_A           91 TAVYYCARGG  100 (117)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEEe
Confidence            9999999864

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.42  E-value=8.5e-07  Score=62.01  Aligned_cols=69  Identities=16%  Similarity=0.129  Sum_probs=48.9

Q ss_pred             hhhccceeeEEeecCCCccEEEEec--CCCCcc---------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYD--SYPTHE---------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k--~~~~~~---------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      ...+..+.+.|-+.|.|.+.+.|||  ++....         .....+|+.+..   .....+|.|.+++.+|+|.|+|.
T Consensus       147 v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~  223 (247)
T 2ghw_B          147 LSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSG---SGTDFTLTISRLEPEDFAVYYCQ  223 (247)
T ss_dssp             ECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEC---SSSEEEEEECSCCGGGCEEEEEE
T ss_pred             ecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEec---CCCeEEEEECcCCHHHCEEEEEE
Confidence            3456778888999999888999998  332210         012345555432   23467899999999999999999


Q ss_pred             EEE
Q psy534           77 VVF   79 (145)
Q Consensus        77 ~~~   79 (145)
                      +.+
T Consensus       224 a~~  226 (247)
T 2ghw_B          224 QRS  226 (247)
T ss_dssp             ECS
T ss_pred             Ecc
Confidence            964

>3cx5_J Heavy chain (VH) of FV-fragment; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 1kb9_J* 1kyo_J* 1p84_J* 2ibz_X* 1ezv_X* 3cxh_J*

Probab=98.42  E-value=5e-07  Score=57.71  Aligned_cols=71  Identities=20%  Similarity=0.207  Sum_probs=46.2

Q ss_pred             hhhccceeeEEeecCCCc---cEEEEecCCC---------------CcccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDEDI---PVYIWYDSYP---------------THEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~---p~~~w~k~~~---------------~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|.+.+.+.   ..+.||+...               ......+++|+.+..+ ......+|.|.+++.+|
T Consensus        12 ~~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~~~~~D   90 (127)
T 3cx5_J           12 VQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRD-TSKNQFFLKLNSVTTED   90 (127)
T ss_dssp             ECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEE-TTTTEEEEEECSCCGGG
T ss_pred             EcCCCCEEEEEEEeCcccCCCcEEEEEEECCCCCcEEEEEEeCCCCeeECcccCCcEEEEEe-CCCCEEEEEECCCCHHH
Confidence            455667777777764322   5677776431               0011234567765432 23457899999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|+|.+..
T Consensus        91 sg~Y~C~~~~  100 (127)
T 3cx5_J           91 TATYYCARSE  100 (127)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEEe
Confidence            9999999864

>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D

Probab=98.42  E-value=1.1e-06  Score=55.72  Aligned_cols=71  Identities=17%  Similarity=0.182  Sum_probs=47.8

Q ss_pred             hhhccceeeEEeecCC--CccEEEEecCCC---C-------------cccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDE--DIPVYIWYDSYP---T-------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~--p~p~~~w~k~~~---~-------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|.+.+.  ....+.||+...   +             .....+++|+.+..+ ...+..+|.|.+++.+|
T Consensus        12 ~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~~~~~D   90 (123)
T 2wzp_D           12 VQAGGSLRLSCTASRRTGSNWCMGWFRQLAGKEPELVVALNFDYDMTYYADSVKGRFTVSRD-SGKNTVYLQMNSLKPED   90 (123)
T ss_dssp             EETTCCEEEEEEESSCCSSSEEEEEEECCSSSSCEEEEEEETTTTEEEECGGGTTTEEEEEE-TTEEEEEEEECSCCGGG
T ss_pred             EcCCCcEEEEEEecCCCccCcEEEEEEECCCCCCEEEEEEEcCCCceecCcccCCCEEEEEe-CCCCEEEEEECCCCHHH
Confidence            4566777777877643  245677877541   1             011235678876532 22346899999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|+|.+..
T Consensus        91 sg~Y~C~~~~  100 (123)
T 2wzp_D           91 TAIYYCAARS  100 (123)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEec
Confidence            9999999875

>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*

Probab=98.42  E-value=1.8e-06  Score=59.16  Aligned_cols=119  Identities=13%  Similarity=0.058  Sum_probs=68.7

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC---Cc--c------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP---TH--E------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~~--~------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      .+..+..+.+-|.+.+.....+.||+...   ..  +      ...+.+|+.+..+ ....+.+|.|.+++.+|+|.|+|
T Consensus        12 ~v~~G~~v~L~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~-~~~~~~sL~I~~~~~~Dsg~Y~C   90 (194)
T 1lp9_E           12 TLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLH-KSSSSFHLQKSSAQLSDSALYYC   90 (194)
T ss_dssp             EEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCB-GGGTBCCEEESSCCGGGCEEEEE
T ss_pred             EEecCCCEEEEEEeCCCCCceEEEEEeCCCCCeEEEEEEcCCCCcccCCCeEEEec-CCCCEEEEEEcccCcccCeeEEE
Confidence            34567777888887765556678887541   10  0      1234677776422 22346899999999999999999


Q ss_pred             EEEEecCCCCCCCCCcEEEEEEeEEe-cCCcEEEEcccCCCCCeeeEEEEecC
Q psy534           76 KVVFLNRSPNSHKNGTWFHLDVHGVF-NDGTELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus        76 ~~~~~~~~~~~~~~g~~~~l~c~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .+............|....|...... ...+.+.+.... +......|.+...
T Consensus        91 ~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~~~~-~~~~tL~Cl~~gf  142 (194)
T 1lp9_E           91 ALFLASSSFSKLVFGQGTSLSVVPNIQNPEPAVYQLKDP-RSQDSTLCLFTDF  142 (194)
T ss_dssp             EEEECSSSSCEEEECCCEEEEEECCCSSCCCEEEEEECT-TSSSCEEEEEESC
T ss_pred             EEecccCCcceeeeccCceEEecCcCCCCCCeeEecCCC-CCCcEEEEEeecc
Confidence            98742100111122334455554321 122344443322 2367899999874

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=98.42  E-value=5.5e-07  Score=56.30  Aligned_cols=71  Identities=14%  Similarity=0.187  Sum_probs=48.7

Q ss_pred             HhhhccceeeEEeecCC-CccEEEEecCCCC-------cc-----------ccc-ccceEEEecCCCCCCeeeEEEcccC
Q psy534            7 VKSIFQMLSVGDFADDE-DIPVYIWYDSYPT-------HE-----------AEE-YKGRISRVDKESPFGMASLNLTKIR   66 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~-p~p~~~w~k~~~~-------~~-----------~~~-~~~R~~~~~~~~~~~~~sL~I~~v~   66 (145)
                      .+..+..+.+-|.+.+. +...+.||+...-       .+           ..+ .++|+.+..+ ....+.+|.|.+++
T Consensus         9 ~~~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~~~   87 (115)
T 2atp_B            9 LVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILES-SDSRRPFLSIMNVK   87 (115)
T ss_dssp             EECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEES-TTSSSCEEEECSCC
T ss_pred             EEcCCCcEEEEEEecCCCCcccEEEEEeCCCCCCCccEEEEEEeCCCCeEecCCCccCcEEEEEe-CCCCEEEEEECCCC
Confidence            35567788888888754 4567888875410       00           111 2578776542 23456899999999


Q ss_pred             CCCCEEEEEEEE
Q psy534           67 ESDQGWYECKVV   78 (145)
Q Consensus        67 ~~D~G~Y~C~~~   78 (145)
                      .+|+|.|+|.+.
T Consensus        88 ~~DsG~Y~C~~~   99 (115)
T 2atp_B           88 PEDSDFYFCATV   99 (115)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             HHHCEEEEEeEc
Confidence            999999999986

>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A

Probab=98.42  E-value=8.7e-07  Score=55.70  Aligned_cols=72  Identities=15%  Similarity=0.113  Sum_probs=49.9

Q ss_pred             HhhhccceeeEEeecCCC-ccEEEEecCCC---Cc--c-------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEE
Q psy534            7 VKSIFQMLSVGDFADDED-IPVYIWYDSYP---TH--E-------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWY   73 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p-~p~~~w~k~~~---~~--~-------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   73 (145)
                      ++..+..+.+-|.+.+.. ...+.||+...   ..  +       .....+|+.+..+ ......+|.|.+++.+|+|.|
T Consensus        10 ~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~Rf~~~~~-~~~~~~~L~I~~~~~~Dsg~Y   88 (117)
T 3bp6_A           10 TVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQL-PNRHDFHMNILDTRRNDSGIY   88 (117)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEEC-TTSSEEEEEESSCCGGGCEEE
T ss_pred             EEeCCCCEEEEeEeecCCCCCEEEEEEeCCCCCceEEEEECCCCccccccCcEEEEEc-CCCCEEEEEECcCCHHHCEEE
Confidence            456678888889887543 56788987631   10  0       1123567776432 234578999999999999999


Q ss_pred             EEEEEE
Q psy534           74 ECKVVF   79 (145)
Q Consensus        74 ~C~~~~   79 (145)
                      +|.+..
T Consensus        89 ~C~~~~   94 (117)
T 3bp6_A           89 LCGAIS   94 (117)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999874

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.41  E-value=2.8e-07  Score=62.60  Aligned_cols=63  Identities=19%  Similarity=0.198  Sum_probs=47.4

Q ss_pred             hhccceeeEEee-cCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFA-DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~-~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+..+.+.|.+ .|.|.|.+.|++++.....  ...+...       .+++|.|.+++.+|+|.|.|.+.+.
T Consensus       124 ~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~--~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~a~N~  187 (212)
T 2v9r_A          124 AVGEPAVMECQPPRGHPEPTISWKKDGSPLDD--KDERITI-------RGGKLMITYTRKSDAGKYVCVGTNM  187 (212)
T ss_dssp             ETTSCEEEECBCCCEESCCEEEEEETTEEECT--TSTTEEE-------ETTEEEESSCCGGGCEEEEEEEEET
T ss_pred             cCCCcEEEEEecCCCCCCCEEEEEECCccCCC--CcceEEc-------cCCeEEEeeCCHhhCeeEEEEEecc
Confidence            345677888988 7899999999998754221  1223332       2568999999999999999999863

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=98.41  E-value=3.2e-07  Score=57.44  Aligned_cols=71  Identities=13%  Similarity=0.268  Sum_probs=45.3

Q ss_pred             hhhccceeeEEeecCC---CccEEEEecCCC---C--c----------ccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDE---DIPVYIWYDSYP---T--H----------EAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~---p~p~~~w~k~~~---~--~----------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|.+.+.   +...+.||+...   .  .          ..+.+.+|+.+..+ ......+|.|.+++.+|
T Consensus        10 ~~~G~~v~L~C~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~~~~~D   88 (116)
T 3bj9_1           10 SALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKD-VARNRGYLSISELQPED   88 (116)
T ss_dssp             EETTCCEEEEEEECSSSCGGGCCEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEE-GGGTEEEEEECSCCGGG
T ss_pred             EcCCCcEEEEEEeecCccCCCceEEEEEeCCCCCcEEEEEEecCCCceeCccCCCcEEEEec-CCCceEEEEECCCChhH
Confidence            4556677777777643   345677876431   1  0          11234567766432 11235599999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|+|.+..
T Consensus        89 sG~Y~C~~~~   98 (116)
T 3bj9_1           89 EAMYYCAMGA   98 (116)
T ss_dssp             CEEEEEEECC
T ss_pred             CEEEEEEEeC
Confidence            9999999863

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=98.41  E-value=1.9e-07  Score=63.23  Aligned_cols=67  Identities=15%  Similarity=0.136  Sum_probs=47.9

Q ss_pred             hhccceeeEEee-cCCCccEEEEecCCCCccccccc------ceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFA-DDEDIPVYIWYDSYPTHEAEEYK------GRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~-~g~p~p~~~w~k~~~~~~~~~~~------~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.++.+.|-+ .|.|.|.+.|++++.........      ++..+     .....+|.|.+++.+|+|.|.|.+.+.
T Consensus       120 ~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~n~  193 (209)
T 1nbq_A          120 TIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL-----NPTTGELVFDPLSASDTGEYSCEARNG  193 (209)
T ss_dssp             ETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCC-----CTTTCCEEESSCCGGGCCCEEEEEECS
T ss_pred             ecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEE-----cCCcceEEEEeccccCCeEEEEEEeCC
Confidence            446677888986 79999999999997542211110      11111     124688999999999999999999864

>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...

Probab=98.41  E-value=5.7e-07  Score=56.41  Aligned_cols=70  Identities=17%  Similarity=0.135  Sum_probs=47.2

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC---C------------cccccccceEEEecCCCCCCeeeEEEcccCCCCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP---T------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQ   70 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~---~------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   70 (145)
                      +..+..+.+-|.+.+.+  ...+.||+...   +            ...+.+++|+.+..+ ......+|.|.+++.+|+
T Consensus        12 ~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~~~~~Ds   90 (116)
T 1a2y_B           12 VAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKD-NSKSQVFLKMNSLHTDDT   90 (116)
T ss_dssp             ECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEE-GGGTEEEEEECSCCGGGC
T ss_pred             EeCCCcEEEEEEEcCCCcCCcEEEEEEeCCCCCcEEEEEEecCCCeeeCcccCCcEEEEEE-CCCCEEEEEECCCCHHHC
Confidence            45667777777776432  35677876531   1            012345678876532 224578999999999999


Q ss_pred             EEEEEEEE
Q psy534           71 GWYECKVV   78 (145)
Q Consensus        71 G~Y~C~~~   78 (145)
                      |.|+|.+.
T Consensus        91 g~Y~C~~~   98 (116)
T 1a2y_B           91 ARYYCARE   98 (116)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            99999986

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.40  E-value=5.2e-07  Score=61.04  Aligned_cols=66  Identities=14%  Similarity=0.108  Sum_probs=45.5

Q ss_pred             hccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ....+...|.+.|.|.|.+.|++++......   .+..  .+......+.|.|.+++.+|.|.|+|.|.+.
T Consensus       132 ~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~---~~~~--~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~  197 (218)
T 4frw_A          132 QGLTLAASCTAEGSPAPSVTWDTEVKGTTSS---RSFK--HSRSAAVTSEFHLVPSRSMNGQPLTCVVSHP  197 (218)
T ss_dssp             CCSEEEEEEEEEEBSCCEEEEEESSCCEEEE---EEEE--CSSSEEEEEEEEECCCGGGTTCEEEEEEECT
T ss_pred             eccccceeeeccCCcCceEEEEECCcccccC---ceEe--cCCcEEEEEEEEEeeCCHHhCeEEEEEEEeC
Confidence            4456677788889999999999997542211   1111  1101112567999999999999999999863

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.40  E-value=6.8e-07  Score=61.53  Aligned_cols=73  Identities=11%  Similarity=0.059  Sum_probs=51.8

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC---Cc-c-----cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP---TH-E-----AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~~-~-----~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      .+..+.++.+-|.+.+.+ +.+.||+...   .. +     ...+.+|+.+..+....++.+|.|.+++.+|+|.|+|.+
T Consensus        12 ~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   90 (207)
T 1ypz_E           12 SLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAA   90 (207)
T ss_dssp             EEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEEEEEE
Confidence            456778888899888654 4799998642   11 1     112567887754323355789999999999999999999


Q ss_pred             EEe
Q psy534           78 VFL   80 (145)
Q Consensus        78 ~~~   80 (145)
                      .+.
T Consensus        91 ~~~   93 (207)
T 1ypz_E           91 DTW   93 (207)
T ss_dssp             ECB
T ss_pred             ecC
Confidence            653

>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*

Probab=98.40  E-value=6.4e-07  Score=56.46  Aligned_cols=71  Identities=20%  Similarity=0.178  Sum_probs=46.5

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC---C-------------cccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP---T-------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~---~-------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|.+.+.+  ...+.||+...   +             .....+++|+.+..+ ......+|.|.+++.+|
T Consensus        12 ~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~~~~~D   90 (120)
T 3b9v_A           12 VQPGGSLRLSCAASGFNIKDTYIGWVRRAPGKGEEWVASIYPTNGYTRYADSVKGRFTISAD-TSKNTAYLQMNSLRAED   90 (120)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEEETTTTEEEECTTTTTTEEEEEE-GGGTEEEEEECSCCGGG
T ss_pred             EeCCccEEEEEEeeCccccccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCeEEEEEc-CCCCEEEEEECCCCHHH
Confidence            44566677777766432  45677776431   1             011235678876532 12456899999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|+|.+..
T Consensus        91 sg~Y~C~~~~  100 (120)
T 3b9v_A           91 TAVYYCARWG  100 (120)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEEEEc
Confidence            9999999874

>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B

Probab=98.40  E-value=5.9e-07  Score=56.75  Aligned_cols=72  Identities=15%  Similarity=0.182  Sum_probs=47.1

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC---C-------------cccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP---T-------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~---~-------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|.+.+.+  ...+.||+...   .             .....+++|+.+..+ ....+.+|.|.+++.+|
T Consensus        12 ~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~~~~~D   90 (121)
T 1j05_H           12 VEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITAD-TSSNTAYLQLTSLTSED   90 (121)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEE-GGGTEEEEEECSCCGGG
T ss_pred             EeCCCcEEEEEEecCcccCCcEEEEEEECCCCCcEEEEEEecCCCceeeCcccCCcEEEEEc-CCCCEEEEEECCCCHHH
Confidence            45566677777766432  35677776431   1             011335678876532 12457899999999999


Q ss_pred             CEEEEEEEEEe
Q psy534           70 QGWYECKVVFL   80 (145)
Q Consensus        70 ~G~Y~C~~~~~   80 (145)
                      +|.|+|.+...
T Consensus        91 sg~Y~C~~~~~  101 (121)
T 1j05_H           91 TAVYYCAPFGY  101 (121)
T ss_dssp             CEEEEEEEEBT
T ss_pred             CEEEEEEEEcC
Confidence            99999999753

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.40  E-value=5e-07  Score=63.75  Aligned_cols=69  Identities=19%  Similarity=0.123  Sum_probs=48.8

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC--Ccc---------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP--THE---------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~--~~~---------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      ...+.++.+.|-+.+.|.+.+.|||+..  ...         ...+.+|+....   .....+|.|.+++.+|+|.|+|.
T Consensus       150 v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~  226 (256)
T 3umt_A          150 ASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSR---SGSDYSLTISSLESEDFVDYYCL  226 (256)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEE---ETTEEEEEECSCCGGGCSEEEEE
T ss_pred             EECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEec---CCCEEEEEECCCChhHCEEEEEE
Confidence            4467788888999998888999998531  110         112345555422   13467799999999999999999


Q ss_pred             EEE
Q psy534           77 VVF   79 (145)
Q Consensus        77 ~~~   79 (145)
                      +.+
T Consensus       227 ~~~  229 (256)
T 3umt_A          227 QYA  229 (256)
T ss_dssp             ECS
T ss_pred             Eee
Confidence            964

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.39  E-value=3.6e-07  Score=69.88  Aligned_cols=65  Identities=23%  Similarity=0.230  Sum_probs=48.0

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccc-cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAE-EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~-~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|.+.  |.|.+.|+++++..... ...+|+..      ..+++|.|.+++.+|+|.|+|.|.+.
T Consensus       364 v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~~~~~~~~------~~~g~L~i~~v~~~D~G~Y~C~a~N~  429 (452)
T 3zyi_A          364 ISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISV------LNDGTLNFSHVLLSDTGVYTCMVTNV  429 (452)
T ss_dssp             CCTTSCCEECCBCC--TTSEEEEECTTSCEECSSCCCSSCEE------CTTSCEECSSCCTTCCEEEEEEEECS
T ss_pred             ccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccCCCCCCEEE------CCCCeEEEeecCHHHCEEEEEEEEcC
Confidence            34566777778776  99999999966543322 23346555      23688999999999999999999753

>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}

Probab=98.39  E-value=6.8e-07  Score=57.08  Aligned_cols=71  Identities=13%  Similarity=0.268  Sum_probs=45.8

Q ss_pred             hhhccceeeEEeecCC---CccEEEEecCCC---C--c----------ccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDE---DIPVYIWYDSYP---T--H----------EAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~---p~p~~~w~k~~~---~--~----------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|.+.+.   ....+.||+...   .  .          ....+.+|+.+..+ ......+|.|.+++.+|
T Consensus        12 v~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~-~~~~~~sL~I~~~~~~D   90 (126)
T 2h32_A           12 SALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKD-VARNRGYLSISELQPED   90 (126)
T ss_dssp             EETTCCEEEEEEECTTSCGGGCEEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEE-GGGTEEEEEECSCCGGG
T ss_pred             ECCCCCEEEEEEecCCCccccceEEEEEECCCCCCEEEEEEECCCCEEeCCCCCCCEEEEEe-CCCCeEEEEECCCChhH
Confidence            4456666777776643   245667776431   0  0          11234678876532 22457899999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|+|.+..
T Consensus        91 sG~Y~C~~~~  100 (126)
T 2h32_A           91 EAMYYCAMGA  100 (126)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEEEEc
Confidence            9999999864

>1sjv_A R9; camelids antibody, domain swapping, heavy chain antibody, AN; 1.94A {Lama glama} SCOP: b.1.1.1

Probab=98.39  E-value=9e-07  Score=55.26  Aligned_cols=71  Identities=18%  Similarity=0.246  Sum_probs=46.0

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC---C------------cccccccceEEEecCCCCCCeeeEEEcccCCCCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP---T------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQ   70 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~---~------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   70 (145)
                      +..+..+.+-|.+.+.+  ...+.||+...   .            ...+.+++|+.+..+ ...++.+|.|.+++.+|+
T Consensus        12 ~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~~~~~Ds   90 (114)
T 1sjv_A           12 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRD-NAKKTVYLEMNSLEPEDT   90 (114)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEEC-TTTCCEEEEECSCCGGGC
T ss_pred             EcCCCCEEEEEEEcCccccCCeEEEEEECCCCCCEEEEEEcCCCcceeCcccCCcEEEEEe-CCCCEEEEEECCCCHHHC
Confidence            45566777777766432  34567776431   1            012335678887543 234578999999999999


Q ss_pred             EEEEEEEEE
Q psy534           71 GWYECKVVF   79 (145)
Q Consensus        71 G~Y~C~~~~   79 (145)
                      |.|+|.+.+
T Consensus        91 G~Y~C~~~~   99 (114)
T 1sjv_A           91 AVYYCYTHY   99 (114)
T ss_dssp             SEEEEEECC
T ss_pred             EEEEEeEEc
Confidence            999999864

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=1.2e-06  Score=55.06  Aligned_cols=64  Identities=16%  Similarity=-0.018  Sum_probs=43.8

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccc-------eEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKG-------RISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~-------R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..+.++.+-|-..+  .|.+.|||++......+..+       |+.+..+   ....+|.|.+++.+|+|.|.|..
T Consensus        21 ~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~---g~~~~L~I~~v~~~D~G~Y~~~~   91 (112)
T 2e6q_A           21 YDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQK---GLQHRLILHAVKHQDSGALVGFS   91 (112)
T ss_dssp             ETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCB---TTEEEEEEESCCSTTCSEEEEEE
T ss_pred             cCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeC---CcEEEEEECCCCHHHCccEEEEE
Confidence            45667777888877  67789999986533221112       6665321   12458999999999999997744

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=98.38  E-value=6.3e-07  Score=56.27  Aligned_cols=36  Identities=31%  Similarity=0.384  Sum_probs=30.3

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC-----CcEEEEeCeeE
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY-----PDLLVVLGSFH  140 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g-----~~~~v~~~~~~  140 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|     ..+.|...++.
T Consensus        74 ~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~p~i  114 (122)
T 3s35_X           74 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFV  114 (122)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEECC
T ss_pred             EEEEECCCCcccCEEEEEEEccCCCceEEEEEEEEeccCeE
Confidence            3799999999999999999999998     56666665543

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.37  E-value=4e-07  Score=62.74  Aligned_cols=56  Identities=20%  Similarity=0.172  Sum_probs=45.0

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+..+.+.|.+.|.|.|.+.|++++.....               ....+|.|.+++.+|+|.|+|.+.+
T Consensus       131 ~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~---------------~~~~~L~i~~v~~~d~G~Y~C~a~n  186 (218)
T 3k0w_A          131 MPGSTLVLQCVAVGSPIPHYQWFKNELPLTH---------------ETKKLYMVPYVDLEHQGTYWCHVYN  186 (218)
T ss_dssp             CTTCCEEEECEEEBSSCCEEEEEETTEECTT---------------CCSSEEEESSCCGGGCEEEEEEEEC
T ss_pred             cCCCcEEEEEEecccCCCeEEEEECCEECCC---------------CCCCEEEEeecChhcCEEEEEEEEc
Confidence            3456788889999999999999998743110               1256899999999999999999985

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=98.37  E-value=5e-07  Score=59.19  Aligned_cols=69  Identities=17%  Similarity=0.166  Sum_probs=49.1

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC---Cc--c------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP---TH--E------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~~--~------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      .+..+..+.+-|.+.+.+...+.||+...   ..  +      ...+.+|+.+..   ...+.+|.|.+++.+|+|.|+|
T Consensus        11 ~v~~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~---~~~~~sL~I~~l~~~DsG~Y~C   87 (143)
T 3u6r_L           11 SLSPGERATLSCRASQSVNKYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSG---SGTDFTLTISNLEPEDFAVYYC   87 (143)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEECSCCGGGCEEEEE
T ss_pred             EEeCCCCEEEEEEECCCCceeeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEc---cCCEEEEEEccCcccCCEEEEE
Confidence            45677888888988876666788987531   10  0      122456776532   2357899999999999999999


Q ss_pred             EEE
Q psy534           76 KVV   78 (145)
Q Consensus        76 ~~~   78 (145)
                      .+.
T Consensus        88 ~~~   90 (143)
T 3u6r_L           88 QQR   90 (143)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            985

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=98.37  E-value=5.3e-06  Score=57.55  Aligned_cols=121  Identities=16%  Similarity=0.055  Sum_probs=70.6

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC---C--cc---c---ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP---T--HE---A---EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~--~~---~---~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      .+..+..+.+-|.+.+...+.+.||+...   .  .+   .   ....+|+.+..+ ......+|.|.+++.+|+|.|+|
T Consensus        14 ~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~-~~~~~~sL~I~~~~~~Dsg~Y~C   92 (210)
T 2eys_A           14 IILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLD-ADTKQSSLHITASQLSDSASYIC   92 (210)
T ss_dssp             EEETTCCEEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEE-TTTTEEEEEESSCCGGGCEEEEE
T ss_pred             EEecCCCEEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEc-CCCCEEEEEEccCCcccCceEEE
Confidence            45667888888988766556788987541   1  01   0   012567776432 23457899999999999999999


Q ss_pred             EEEEecCCCCCCCCCcEEEEEEeEE-ecCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534           76 KVVFLNRSPNSHKNGTWFHLDVHGV-FNDGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus        76 ~~~~~~~~~~~~~~g~~~~l~c~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+............|....|..... ....+.+.+.... +......|.+.....
T Consensus        93 ~~~~~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~~~~~~-~~~~tl~Cl~~gf~P  146 (210)
T 2eys_A           93 VVSDRGSTLGRLYFGRGTQLTVWPDIQNPDPAVYQLRDS-KSSDKSVCLFTDFDS  146 (210)
T ss_dssp             EEESCSSTTCCEEECCCEEEEEECCCSSCCCEEEEECCC-SSSSCEEEEEESCCT
T ss_pred             EEEccCCCcccceECCCEEEEEECCCCCCCCeEEecCCC-CCCceEEEEcccccC
Confidence            9874210001112233334444322 1122344443322 226789999987543

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=98.36  E-value=3.5e-07  Score=59.32  Aligned_cols=70  Identities=17%  Similarity=0.169  Sum_probs=47.8

Q ss_pred             HhhhccceeeEEeecCCC---ccEEEEecCCC---C--------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEE
Q psy534            7 VKSIFQMLSVGDFADDED---IPVYIWYDSYP---T--------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGW   72 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p---~p~~~w~k~~~---~--------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~   72 (145)
                      ++..+..+.+-|.+.+.+   .+.+.||+...   +        .....+.+|+.+..   ...+.+|.|.+++.+|+|.
T Consensus        16 ~v~~G~~vtL~C~~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~---~~~~~sL~I~~v~~~DsG~   92 (135)
T 1p4b_L           16 TTSPGETVTLTCRSSTGAVTTSNYASWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL---IGDKAALTITGAQTEDEAI   92 (135)
T ss_dssp             EECTTCEEEEEEEETTSSCCGGGCCEEEEEEGGGEEEEEEETTTEECTTCCTTEEEEE---ETTEEEEEEESCCGGGCEE
T ss_pred             EEcCCCCEEEEEEecCCCcCCCCEEEEEEECCCCCCEEEEEeCCccCCCCCCCEEEEc---CCCEEEEEECCCChhHCEE
Confidence            345667778888887554   56688887542   0        01123456777642   1347889999999999999


Q ss_pred             EEEEEEE
Q psy534           73 YECKVVF   79 (145)
Q Consensus        73 Y~C~~~~   79 (145)
                      |+|.+..
T Consensus        93 Y~C~~~~   99 (135)
T 1p4b_L           93 YFCALWY   99 (135)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            9999863

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.36  E-value=7.5e-07  Score=62.99  Aligned_cols=69  Identities=13%  Similarity=0.126  Sum_probs=48.4

Q ss_pred             hhhccceeeEEeecCCCccEEEEecC--CCCcc---------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDS--YPTHE---------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~--~~~~~---------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      ...+.++.+.|-+.|.|.+.+.|||.  +....         .....+|+....   .....+|.|.+++.+|+|.|+|.
T Consensus       151 v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~  227 (257)
T 1f3r_B          151 ASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG---SGTDYTLTISSLQPEDVATYFCY  227 (257)
T ss_dssp             CCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---EBTEEEEEECSCCGGGCSEEEEE
T ss_pred             EcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEec---CCCEEEEEECCCChhhCEEEEEE
Confidence            44567788899999998889999993  32210         011234554421   12367899999999999999999


Q ss_pred             EEE
Q psy534           77 VVF   79 (145)
Q Consensus        77 ~~~   79 (145)
                      +.+
T Consensus       228 a~n  230 (257)
T 1f3r_B          228 QYN  230 (257)
T ss_dssp             EES
T ss_pred             EeC
Confidence            975

>1yc7_A Anti-VSG immunoglobulin heavy chain variable domain caban33; antibody, camel antibody, immune system; 1.60A {Camelus dromedarius} PDB: 1yc8_A 1yzz_A

Probab=98.35  E-value=1.4e-06  Score=55.47  Aligned_cols=72  Identities=17%  Similarity=0.252  Sum_probs=47.7

Q ss_pred             HhhhccceeeEEeecCCC--ccEEEEecCCC---C------------cccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            7 VKSIFQMLSVGDFADDED--IPVYIWYDSYP---T------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p--~p~~~w~k~~~---~------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      .+..+..+.+-|.+.+.+  ...+.||+...   +            .....+++|+.+..+ ......+|.|.+++.+|
T Consensus        11 ~~~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~-~~~~~~~L~I~~~~~~D   89 (124)
T 1yc7_A           11 SVQAGGSLRLSCAVSGSTYSPCTTGWYRQAPGKEREWVSSISSPGTIYYQDSVKGRFTISRD-NAKNTVYLQMNSLQRED   89 (124)
T ss_dssp             EECTTCCEEEEEEEESCCSSCEEEEEEEECTTSCEEEEEEECSTTCEEECGGGTTTEEEEEE-TTTTEEEEEECSCCGGG
T ss_pred             EEecCCCEEEEEEEeCCCcCCCEEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEE-CCCCEEEEEECCCCHHH
Confidence            345566777777776432  45677776431   1            012345678877543 23457899999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|+|.+..
T Consensus        90 sg~Y~C~~~~   99 (124)
T 1yc7_A           90 TGMYYCQIQC   99 (124)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEEe
Confidence            9999999874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.35  E-value=9.4e-07  Score=65.19  Aligned_cols=70  Identities=11%  Similarity=0.049  Sum_probs=48.5

Q ss_pred             hccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecC--CCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDK--ESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~--~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+..+.+.|.+.|.|.|.+.|++++.... .....+......  +....+++|.|.+++.+|+|.|+|.|.+.
T Consensus       260 ~g~~v~l~C~~~g~P~p~i~W~~~g~~l~-~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~  331 (347)
T 2ifg_A          260 EMHHWCIPFSVDGQPAPSLRWLFNGSVLN-ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP  331 (347)
T ss_dssp             ESSSEEEEEEEEEESCCEEEEEETTEECC-CCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             cCceEEEEEEeeecCCCcEEEEeCCEECC-CCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecC
Confidence            35667888999999999999999875422 111111222110  11233788999999999999999999763

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.35  E-value=1.7e-06  Score=59.36  Aligned_cols=70  Identities=16%  Similarity=0.125  Sum_probs=46.3

Q ss_pred             hccceeeEEeecCCCccEEEEec----CCCCcccccccceEEEe--cCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYD----SYPTHEAEEYKGRISRV--DKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k----~~~~~~~~~~~~R~~~~--~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+..+.+.|.+.|.|.|.+.|++    ++.. +...-.......  .........+|.|.+++.+|+|.|+|.+.+.
T Consensus       132 ~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  207 (231)
T 3ojm_B          132 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSK-YGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNY  207 (231)
T ss_dssp             TTCCEEEECCEECSSCCEEEEEEECCBTTBS-BCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEET
T ss_pred             eCCcEEEEEEEecCCCCEEEEEECCCCCCcc-ccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEec
Confidence            45677888999999999999998    4432 211111111111  1111233577999999999999999999753

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.34  E-value=1e-06  Score=62.04  Aligned_cols=69  Identities=16%  Similarity=0.154  Sum_probs=48.6

Q ss_pred             hhhccceeeEEeecCCCcc----EEEEecCCC---Cc--------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEE
Q psy534            8 KSIFQMLSVGDFADDEDIP----VYIWYDSYP---TH--------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGW   72 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p----~~~w~k~~~---~~--------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~   72 (145)
                      ...+.++.+.|.+.+.+.+    .+.||++..   ..        ....+.+|+....   .....+|.|.+++.+|+|.
T Consensus       145 v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~DsG~  221 (253)
T 3uzq_A          145 VSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSG---SRTDFTLTINPVEADDVAT  221 (253)
T ss_dssp             ECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCEE
T ss_pred             EeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeC---CCCEEEEEECCCCHHHCEE
Confidence            4567788889999988876    899998531   11        0112345555422   1336789999999999999


Q ss_pred             EEEEEEE
Q psy534           73 YECKVVF   79 (145)
Q Consensus        73 Y~C~~~~   79 (145)
                      |+|.+.+
T Consensus       222 Y~C~~~n  228 (253)
T 3uzq_A          222 YFCQRSN  228 (253)
T ss_dssp             EEEEECS
T ss_pred             EEEEEcc
Confidence            9999974

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=98.34  E-value=6e-07  Score=54.95  Aligned_cols=25  Identities=32%  Similarity=0.278  Sum_probs=23.7

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+|.|.+++.+|+|.|+|.|.|..|
T Consensus        63 ~~L~I~~~~~~D~G~Y~C~a~N~~G   87 (100)
T 3knb_A           63 TTLIIMDVQKQDGGLYTLSLGNEFG   87 (100)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEEcCCCccCCEEEEEEEEECCC
Confidence            3799999999999999999999998

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.34  E-value=9.4e-07  Score=61.90  Aligned_cols=70  Identities=11%  Similarity=0.106  Sum_probs=49.2

Q ss_pred             hhccceeeEEeecCCC--ccEEEEecCC--CCc--c------------cccccceEEEecCCCCCCeeeEEEcccCCCCC
Q psy534            9 SIFQMLSVGDFADDED--IPVYIWYDSY--PTH--E------------AEEYKGRISRVDKESPFGMASLNLTKIRESDQ   70 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p--~p~~~w~k~~--~~~--~------------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   70 (145)
                      ..+.++.+.|.+.|.+  .+.+.||++.  ...  +            ...+.+|+.+..+ ......+|.|.+++.+|+
T Consensus       144 ~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~v~~~Ds  222 (250)
T 3esu_F          144 KPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTAD-KSSSTAYMQLSSLTSVDS  222 (250)
T ss_dssp             CTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEE-GGGTEEEEEECSCCGGGC
T ss_pred             cCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEec-CCCCeEEEEECCCCcccC
Confidence            4566788889998876  7899999873  211  0            1234467666422 112356899999999999


Q ss_pred             EEEEEEEEE
Q psy534           71 GWYECKVVF   79 (145)
Q Consensus        71 G~Y~C~~~~   79 (145)
                      |.|+|.+.+
T Consensus       223 G~Y~C~~~~  231 (250)
T 3esu_F          223 AVYFCARSG  231 (250)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEec
Confidence            999999985

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=98.33  E-value=6.3e-07  Score=60.03  Aligned_cols=66  Identities=11%  Similarity=0.219  Sum_probs=48.1

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCC-CCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRE-SDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~-~D~G~Y~C~~~~~   80 (145)
                      ..+.++.+.|.+.|.|.|.+.|++++.. +..  ..++.+...   ....+|.|.+++. +|+|.|+|.+.+.
T Consensus       116 ~~g~~~~l~C~~~~~p~p~v~W~~~~~~-~~~--~~~~~~~~~---~~~~~L~i~~~~~~~d~G~Y~C~a~n~  182 (197)
T 3lcy_A          116 AVGSTLRLHVMYIGRPVPAMTWFHGQKL-LQN--SENITIENT---EHYTHLVMKNVQRKTHAGKYKVQLSNV  182 (197)
T ss_dssp             ETTSCEEEEEEEEEESCCEEEEEETTEE-CCC--CSSEEEEEC---SSEEEEEESSCCHHHHCEEEEEEEECS
T ss_pred             cCCCeEEEEEEEeeeeCCeeEEeECCEE-CCC--CCceEEEEc---CCEEEEEEccccchhhCceEEEEEEcC
Confidence            3466788889999999999999998753 221  223333221   2348899999995 8999999999753

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=98.33  E-value=1.1e-06  Score=54.92  Aligned_cols=71  Identities=20%  Similarity=0.202  Sum_probs=45.8

Q ss_pred             hhhccceeeEEeecCC-CccEEEEecCCC---C--c---------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEE
Q psy534            8 KSIFQMLSVGDFADDE-DIPVYIWYDSYP---T--H---------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGW   72 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~-p~p~~~w~k~~~---~--~---------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~   72 (145)
                      +..+..+.+-|.+.+. +.+.+.||+...   .  .         ....+.+|+.+..+ ...++.+|.|.+++.+|+|.
T Consensus        12 ~~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~~~~~DsG~   90 (116)
T 1tvd_A           12 VASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHI-LTQKAFHLVISPVRTEDSAT   90 (116)
T ss_dssp             EETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEE-GGGTEEEEEESSCCGGGCEE
T ss_pred             EecCCeEEEEeEeEcCCCCcEEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEe-cCCCEEEEEEccCChHHCEE
Confidence            4456666677776543 445577776531   0  0         01224678776432 23457899999999999999


Q ss_pred             EEEEEEE
Q psy534           73 YECKVVF   79 (145)
Q Consensus        73 Y~C~~~~   79 (145)
                      |+|.+.+
T Consensus        91 Y~C~~~~   97 (116)
T 1tvd_A           91 YYCAFTL   97 (116)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            9999974

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=98.33  E-value=1.7e-06  Score=55.81  Aligned_cols=72  Identities=15%  Similarity=0.113  Sum_probs=49.7

Q ss_pred             HhhhccceeeEEeecCCC-ccEEEEecCCC---Cc--c-------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEE
Q psy534            7 VKSIFQMLSVGDFADDED-IPVYIWYDSYP---TH--E-------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWY   73 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p-~p~~~w~k~~~---~~--~-------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   73 (145)
                      ++..+..+.+-|.+.+.. ...+.||+...   ..  +       .....+|+.+..+ ......+|.|.+++.+|+|.|
T Consensus        20 ~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~-~~~~~~~L~I~~~~~~Dsg~Y   98 (134)
T 3bik_B           20 TVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQL-PNRHDFHMNILDTRRNDSGIY   98 (134)
T ss_dssp             EEETTSCEEEEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEEC-TTSSEEEEEECSCCGGGCEEE
T ss_pred             EEeCCCCEEEEEEeCCCCCCcEEEEEEcCCCCCceEEEEEcCCCCCcccCCCEEEEec-CCCCEEEEEECCCChHHCEEE
Confidence            456778888889887543 46788987631   10  0       1123567775322 234578999999999999999


Q ss_pred             EEEEEE
Q psy534           74 ECKVVF   79 (145)
Q Consensus        74 ~C~~~~   79 (145)
                      +|.+..
T Consensus        99 ~C~~~~  104 (134)
T 3bik_B           99 LCGAIS  104 (134)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999864

>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A

Probab=98.33  E-value=1.2e-06  Score=54.84  Aligned_cols=70  Identities=16%  Similarity=0.135  Sum_probs=45.1

Q ss_pred             HhhhccceeeEEeecCC-CccEEEEecCC--C---Cc-----------ccccc-cceEEEecCCCCCCeeeEEEcccCCC
Q psy534            7 VKSIFQMLSVGDFADDE-DIPVYIWYDSY--P---TH-----------EAEEY-KGRISRVDKESPFGMASLNLTKIRES   68 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~-p~p~~~w~k~~--~---~~-----------~~~~~-~~R~~~~~~~~~~~~~sL~I~~v~~~   68 (145)
                      .+..+..+.+-|.+.+. +...+.||+..  .   ..           ...++ ++|+....   ...+.+|.|.+++.+
T Consensus        11 ~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~rf~~~~---~~~~~~L~I~~~~~~   87 (114)
T 2hp4_A           11 TWNLGETVELKCQVLLSNPTSGASWLFQPRGAAASPTFLLYLNQNKPKAAEGLDTQRFSGKR---LGDTFVLTLSDFRRE   87 (114)
T ss_dssp             CCCTTCCEEEEEEECCSSCCSCEEEEEEESSSSCCCEEEEEESSSSCEECTTCCTTTEEEEE---ETTEEEEEESSCCGG
T ss_pred             EEcCCCCEEEEEEeecCCCCceEEEEEECCCCCCCcEEEEEEcCCCccccCCCCcccEEEEe---cCCEEEEEECCCCHH
Confidence            45567777788877633 34567787642  1   10           01122 45665432   134678999999999


Q ss_pred             CCEEEEEEEEE
Q psy534           69 DQGWYECKVVF   79 (145)
Q Consensus        69 D~G~Y~C~~~~   79 (145)
                      |+|.|+|.+..
T Consensus        88 Dsg~Y~C~~~~   98 (114)
T 2hp4_A           88 NEGYYFCSALS   98 (114)
T ss_dssp             GCEEEEEEEEE
T ss_pred             HCEEEEEEEec
Confidence            99999999864

>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A

Probab=98.32  E-value=1e-05  Score=55.83  Aligned_cols=116  Identities=17%  Similarity=0.137  Sum_probs=66.5

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC---Cc--------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP---TH--------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~~--------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      +..+..+.+-|.+.+.....+.||+...   ..        ....+.+|+.+..+ ......+|.|.+++.+|+|.|+|.
T Consensus        12 v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~-~~~~~~sL~I~~l~~~DsG~Y~Ca   90 (200)
T 3rgv_A           12 LSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYD-KGTTSFHLQKTSVQEIDSAVYYCA   90 (200)
T ss_dssp             EETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECB-TTTTBCCEEESSCCSTTCEEEEEE
T ss_pred             EeCCCCEEEEEEecCCCCcEEEEEEeCCCCCcEEEEEecCCCCcccCCceEEEEC-CCCCEEEEEEcCCcCccCCCEEEE
Confidence            3455666666666543334566776421   10        01235678876432 334578999999999999999999


Q ss_pred             EEEecCCCCCCCCCcEEEEEEeEE-ecCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534           77 VVFLNRSPNSHKNGTWFHLDVHGV-FNDGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus        77 ~~~~~~~~~~~~~g~~~~l~c~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +...    .....|....|..... ....+.+.+..-. +....+.|.+..-..
T Consensus        91 ~~~~----~~~~fG~GT~L~V~~~~~~~~P~V~~~~~~-~~~~tl~Cl~~gf~P  139 (200)
T 3rgv_A           91 ANSG----TYQRFGTGTKLQVVPNIQNPDPAVYQLRDS-KSSDKSVCLFTDFDS  139 (200)
T ss_dssp             EESS----SCCCCCCCEEEEEECCCSSCCCEEEEEEES-SSSSCEEEEEESCCT
T ss_pred             eccC----cccccCcCEEEEEeCCCCCCCCeEEEccCC-CCCceEEEEcccccC
Confidence            8521    1223344445554432 1122344333222 244789999988654

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.32  E-value=1.1e-06  Score=62.91  Aligned_cols=71  Identities=20%  Similarity=0.204  Sum_probs=49.2

Q ss_pred             hhccceeeEEeecCCC--ccEEEEecCCC--Cc--c------------cccccceEEEecCCCCCCeeeEEEcccCCCCC
Q psy534            9 SIFQMLSVGDFADDED--IPVYIWYDSYP--TH--E------------AEEYKGRISRVDKESPFGMASLNLTKIRESDQ   70 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p--~p~~~w~k~~~--~~--~------------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   70 (145)
                      ..+.++.+.|.+.|.+  .+.+.||++..  ..  +            .....+|+.+..+ ......+|.|.+++.+|+
T Consensus       147 ~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~v~~~Ds  225 (276)
T 3auv_A          147 QPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISAD-TSKNTAYLQMNSLRAEDT  225 (276)
T ss_dssp             CTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEE-GGGTEEEEEECSCCGGGC
T ss_pred             cCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEec-CCCcEEEEEECCCChhHC
Confidence            4566788889998876  58999999641  10  0            1123456665321 112356899999999999


Q ss_pred             EEEEEEEEEe
Q psy534           71 GWYECKVVFL   80 (145)
Q Consensus        71 G~Y~C~~~~~   80 (145)
                      |.|+|.+.+.
T Consensus       226 G~Y~C~a~n~  235 (276)
T 3auv_A          226 AVYYCARFVF  235 (276)
T ss_dssp             EEEEEEEECS
T ss_pred             EEEEEEEEcC
Confidence            9999999864

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=98.32  E-value=5.7e-07  Score=55.83  Aligned_cols=25  Identities=24%  Similarity=0.336  Sum_probs=23.6

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus        69 ~~L~I~~v~~~D~G~Y~C~a~N~~G   93 (107)
T 3knb_B           69 HGLLLTAALPTDAGVYVCRARNAAG   93 (107)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEEecCChhhCEEEEEEEEECCC
Confidence            3799999999999999999999998

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=98.31  E-value=1.5e-06  Score=57.80  Aligned_cols=57  Identities=9%  Similarity=0.098  Sum_probs=44.0

Q ss_pred             hhccceeeEEeecCCC-ccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDED-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.++.+.|-+.+.+ .+.+.|++++...         ...     .....|.|.+++.+|+|.|.|.+.+
T Consensus       101 ~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~---------~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n  158 (175)
T 1fnl_A          101 KEEDPIHLRCHSWKNTALHKVTYLQNGKDR---------KYF-----HHNSDFHIPKATLKDSGSYFCRGLV  158 (175)
T ss_dssp             ETTCCEEEEEEECTTCCCEEEEEEETTEEE---------EEE-----EECCCEEESSCCGGGCEEEEEEEEE
T ss_pred             cCCCCEEEEEEcCCCCCceEEEEEECCeEc---------cCC-----CCCCEEEEcccChhhCeEEEEEEEc
Confidence            3567788889888765 4599999987531         110     1268899999999999999999986

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=98.31  E-value=1.6e-06  Score=60.18  Aligned_cols=62  Identities=10%  Similarity=-0.032  Sum_probs=45.5

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+..+.+.|-..+.|.+.+.|+|++.... .   .+ ..     ....+.|.|.+++.+|+|.|+|.+.+.
T Consensus       118 ~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~-~---~~-~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~n~  179 (218)
T 1uct_A          118 MPGENISLTCSSAHIPFDRFSLAKEGELSL-P---QH-QS-----GEHPANFSLGPVDLNVSGIYRCYGWYN  179 (218)
T ss_dssp             CTTCCCEEEEECSSSCCSEEEEEETTCSSC-C---SE-EE-----CSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCCCCEEEEEeCCCCCCCEEEEEECCCccc-c---cc-cC-----CCccCEEEEccCCcccCEEEEEEEEcC
Confidence            355677888865667788999999985421 1   11 11     134788999999999999999999853

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.31  E-value=1.6e-06  Score=59.54  Aligned_cols=72  Identities=19%  Similarity=0.223  Sum_probs=45.3

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCCCcccccc-cceEEEecC-CCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYPTHEAEEY-KGRISRVDK-ESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~~~~~~~~-~~R~~~~~~-~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.++.+.|.+.|.|  .+.+.|++++........ ..+...... .......+|.|.+++.+|+|.|+|.+.+
T Consensus       117 v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N  192 (213)
T 2x1w_L          117 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS  192 (213)
T ss_dssp             EETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             EcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEec
Confidence            34677888999999754  457999998754211101 001100000 0011256799999999999999999975

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.31  E-value=1.2e-06  Score=60.83  Aligned_cols=71  Identities=15%  Similarity=0.174  Sum_probs=48.4

Q ss_pred             hhhccceeeEEeecCCCc--cEEEEecCC--CCc--------------ccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDEDI--PVYIWYDSY--PTH--------------EAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~--p~~~w~k~~--~~~--------------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      ...+.++.+.|.+.|.|.  +.+.||++.  ...              ....+.+|+.+..+ ......+|.|.+++.+|
T Consensus       131 v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~v~~~D  209 (240)
T 1moe_A          131 VEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITAD-TSSNTAYLQLTSLTSED  209 (240)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEE-TTTTEEEEEECSCCGGG
T ss_pred             EeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEc-ccCCEEEEEECcCCHHH
Confidence            345677888899998874  589999963  111              01123456655321 12346789999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|+|.+..
T Consensus       210 ~G~Y~C~a~~  219 (240)
T 1moe_A          210 TAVYYCAPFG  219 (240)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEEEEEEe
Confidence            9999999973

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X*

Probab=98.31  E-value=4.8e-07  Score=56.66  Aligned_cols=71  Identities=17%  Similarity=0.269  Sum_probs=42.6

Q ss_pred             HhhhccceeeEEeec--CCCccEEEEecCC-C----Cc---------ccccccceEEEecCCCCCCeeeEEEcccCCCCC
Q psy534            7 VKSIFQMLSVGDFAD--DEDIPVYIWYDSY-P----TH---------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQ   70 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~--g~p~p~~~w~k~~-~----~~---------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   70 (145)
                      .+..+..+.+-|.+.  +.....+.||+.. .    ..         ......+|+.+..+ ...++.+|.|.+++.+|+
T Consensus         7 ~~~~G~~vtL~C~~~~~~~~~~~v~W~r~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~-~~~~~~sL~I~~v~~~Ds   85 (116)
T 3bia_X            7 IGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGK-VQFGEVSLTISNTNRGDS   85 (116)
T ss_dssp             EEETTSCEEECCBCTTCCTTTCEEEEEESSCCSSSCTTEEEEECSSSEEEESSTTEEECSC-GGGTBCCEEECSCCGGGC
T ss_pred             EEeeCCcEEEEEEeeCCCCCeEEEEEeeecCCCCCCceEEEEECCcccccccCceEEEecc-CCCCEEEEEEccCChhHC
Confidence            344555666666654  2223346666554 1    00         01122346655332 345578999999999999


Q ss_pred             EEEEEEEE
Q psy534           71 GWYECKVV   78 (145)
Q Consensus        71 G~Y~C~~~   78 (145)
                      |.|+|.+.
T Consensus        86 g~Y~C~v~   93 (116)
T 3bia_X           86 GVYCCRIE   93 (116)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            99999986

>1kxt_B Immunoglobulin VHH fragment; alpha 8 beta 8, beta barrel, hydrolase, immune system; 2.00A {Camelus dromedarius} SCOP: b.1.1.1

Probab=98.31  E-value=1.5e-06  Score=55.44  Aligned_cols=71  Identities=20%  Similarity=0.236  Sum_probs=46.7

Q ss_pred             HhhhccceeeEEeecCC--CccEEEEecCCC---C------------cccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            7 VKSIFQMLSVGDFADDE--DIPVYIWYDSYP---T------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~--p~p~~~w~k~~~---~------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      .+..+..+.+-|.+.+.  ....+.||+...   .            .....+++|+.+..+ ....+.+|.|.+++.+|
T Consensus        11 ~~~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~-~~~~~~sL~I~~~~~~D   89 (127)
T 1kxt_B           11 SVQAGGSLRLSCAASGYTFSSYPMGWYRQAPGKECELSARIFSDGSANYADSVKGRFTISRD-NAANTAYLQMDSLKPED   89 (127)
T ss_dssp             ECCTTCCEEEEEEEC--CCSSSCEEEEEECTTSCEEEEEEECTTSCEEECTTTTTTEEEEEC-SSSSEEEEEECSCCGGG
T ss_pred             EEeCCCCEEEEeEecCCCccceEEEEEEECCCCCcEEEEEEecCCCeeeCcccCCeEEEEEe-CCCCEEEEEECcCCHHH
Confidence            34566677777777642  234577776431   0            112345678887543 33457899999999999


Q ss_pred             CEEEEEEEE
Q psy534           70 QGWYECKVV   78 (145)
Q Consensus        70 ~G~Y~C~~~   78 (145)
                      +|.|.|.+.
T Consensus        90 sg~Y~C~~~   98 (127)
T 1kxt_B           90 TAVYYCAAG   98 (127)
T ss_dssp             CEEEEEEEC
T ss_pred             CEEEEEEEE
Confidence            999999886

>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=98.31  E-value=1.1e-06  Score=55.40  Aligned_cols=37  Identities=24%  Similarity=0.535  Sum_probs=29.9

Q ss_pred             cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           41 EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        41 ~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      .+.+|+.+..+ ...+..+|.|.+++.+|+|.|+|.+.
T Consensus        59 ~~~~R~~~~~~-~~~~~~sL~I~~l~~~DsG~Y~C~v~   95 (117)
T 1xed_A           59 KYAGRANLTNF-PENGTFVVNIAQLSQDDSGRYKCGLG   95 (117)
T ss_dssp             TTTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEES
T ss_pred             eEcCCEEEEec-CCCCEEEEEECCCChHHCEEEEEEEE
Confidence            46778876543 44568899999999999999999885

>1i3u_A Antibody VHH LAMA domain; VHH fragment, immune system; HET: RR1; 1.95A {Lama glama} SCOP: b.1.1.1 PDB: 1i3v_A

Probab=98.31  E-value=1.4e-06  Score=55.58  Aligned_cols=72  Identities=18%  Similarity=0.284  Sum_probs=46.9

Q ss_pred             HhhhccceeeEEeecCCC--ccEEEEecCCC---C------------------cccccccceEEEecCCCCCCeeeEEEc
Q psy534            7 VKSIFQMLSVGDFADDED--IPVYIWYDSYP---T------------------HEAEEYKGRISRVDKESPFGMASLNLT   63 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p--~p~~~w~k~~~---~------------------~~~~~~~~R~~~~~~~~~~~~~sL~I~   63 (145)
                      .+..+..+.+-|.+.+.+  ...+.||+...   +                  .....+++|+.+..+ ......+|.|.
T Consensus        11 ~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Rf~~~~~-~~~~~~~L~I~   89 (127)
T 1i3u_A           11 LVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRD-NAKNTVNLQMN   89 (127)
T ss_dssp             ECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEE-GGGTEEEEEEC
T ss_pred             EEeCCCcEEEEEEecCCCcCCcEEEEEEECCCCCcEEEEEEEeccccCCCcceeeCcccCCeEEEEEc-CCCCEEEEEEC
Confidence            345566777777766432  45677776431   1                  011235678876532 12347899999


Q ss_pred             ccCCCCCEEEEEEEEE
Q psy534           64 KIRESDQGWYECKVVF   79 (145)
Q Consensus        64 ~v~~~D~G~Y~C~~~~   79 (145)
                      +++.+|+|.|.|.+..
T Consensus        90 ~~~~~Dsg~Y~C~~~~  105 (127)
T 1i3u_A           90 SLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             SCCGGGCEEEEEEEES
T ss_pred             CCChhhCEEEEEEEEc
Confidence            9999999999999874

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.31  E-value=2.3e-06  Score=59.24  Aligned_cols=70  Identities=16%  Similarity=0.151  Sum_probs=47.0

Q ss_pred             hhccceeeEEeecCCCccEEEEec----CCCCcccccccceEEEe---cCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYD----SYPTHEAEEYKGRISRV---DKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k----~~~~~~~~~~~~R~~~~---~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.++.+.|.+.|.|.|.+.|++    ++... ...-..+....   .........+|.|.+++.+|+|.|+|.+.+
T Consensus       127 ~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N  203 (241)
T 3grw_A          127 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKV-GPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATN  203 (241)
T ss_dssp             CTTCCEEEEEEEECSSCCEEEEEEECCSSSCSS-CTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             cCCCEEEEEEEEecCCCCEEEEEEcccCCCccc-CCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEec
Confidence            346678889999999999999999    55332 11111111110   001112367899999999999999999975

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.30  E-value=1.4e-06  Score=57.99  Aligned_cols=57  Identities=18%  Similarity=0.106  Sum_probs=45.2

Q ss_pred             hhccceeeEEeec-CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFAD-DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.++.+.|.+. +.|.+.+.|++++... .        .     ...+..|.|.+++.+|+|.|.|.+.+
T Consensus        98 ~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~-~--------~-----~~~~~~L~i~~v~~~d~G~Y~C~a~n  155 (176)
T 1f2q_A           98 MEGQPLFLRCHGWRNWDVYKVIYYKDGEAL-K--------Y-----WYENHNISITNATVEDSGTYYCTGKV  155 (176)
T ss_dssp             ETTSCEEEEEEEGGGCCEEEEEEEETTEEC-C--------S-----CCCSSEEEESSCCGGGCEEEEEEEEE
T ss_pred             eCCCCEEEEEEecCCCCceEEEEEECCEEE-e--------e-----ecCCCeEEECCCCcccCEEEEEEEEe
Confidence            3567788899995 7788899999987431 1        0     12367899999999999999999986

>2x1q_A Gelsolin nanobody; contractIle protein; 1.06A {Lama glama} PDB: 2x1p_A 2xa3_A 3k7u_A 3sn6_N* 3stb_A 2x1o_A 3k80_A 1ol0_A 1u0q_A 1qd0_A* 3ezj_B 3p0g_B* 1mvf_A 1t2j_A

Probab=98.30  E-value=1.2e-06  Score=55.89  Aligned_cols=71  Identities=17%  Similarity=0.193  Sum_probs=43.8

Q ss_pred             hhhccceeeEEeecCC--CccEEEEecCCC---C-------------cccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDE--DIPVYIWYDSYP---T-------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~--p~p~~~w~k~~~---~-------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|.+.+.  ....+.||+...   +             .....+++|+.+..+ ....+.+|.|.+++.+|
T Consensus        12 v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~L~I~~~~~~D   90 (127)
T 2x1q_A           12 VQPGGSLRLSCAASGRTFSNYRMGWFRQAPGKEREFVATISQSGAATAYADSVKGRFTFSRD-NAKNLLYLEMLSLEPED   90 (127)
T ss_dssp             ECTTCCEEEEEC------CCSEEEEEEECTTSCCEEEEEECTTSSCEEECTTTTTTEEEEEE-GGGTEEEEEECSCCGGG
T ss_pred             EcCCCCEEEEEEeCCcccCCcEEEEEEECCCCCCEEEEEEecCCCceeeCcccCCcEEEEEe-CCCCEEEEEEcCCCHHH
Confidence            4456666666766532  234566766431   1             011335678876532 12457899999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|.|.+..
T Consensus        91 sg~Y~C~~~~  100 (127)
T 2x1q_A           91 TAVYYCAASS  100 (127)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEEEEe
Confidence            9999999874

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=98.29  E-value=3.4e-06  Score=56.62  Aligned_cols=62  Identities=11%  Similarity=0.028  Sum_probs=45.0

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN   81 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   81 (145)
                      ..+.++.+.|.+.+.| +.+.|+|++.... ...  +..       .....|.|.+++.+|+|.|.|.+.+..
T Consensus       106 ~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~-~~~--~~~-------~~~~~L~i~~v~~~D~G~Y~C~a~n~~  167 (184)
T 2gi7_A          106 SSGGDVTLQCQTRYGF-DQFALYKEGDPAP-YKN--PER-------WYRASFPIITVTAAHSGTYRCYSFSSR  167 (184)
T ss_dssp             CCTTCEEEEEECSSCC-CEEEEEECCCCTT-SCC--CCE-------EEEESSSEEEETTCCSEEEEEEEECTT
T ss_pred             cCCCcEEEEEEcCCCC-cEEEEEECCCcCc-cee--cCC-------CceEEEEEccCCccCCeEEEEEEEeCC
Confidence            3566788889887665 6899999985422 111  111       227789999999999999999998753

>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A 1z2k_A

Probab=98.29  E-value=1.5e-06  Score=53.69  Aligned_cols=67  Identities=13%  Similarity=0.248  Sum_probs=52.0

Q ss_pred             HhhhccceeeEEeec---CCCc--cEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            7 VKSIFQMLSVGDFAD---DEDI--PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~---g~p~--p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      |.++.+....+.|..   +...  -++.|..+........|++|+.+.     ..+++|.|.+++++|+|.|.-++.
T Consensus        24 ps~l~tk~~sv~Wk~~~~t~~q~~kIl~W~~~~~~~~~~~fk~r~~fd-----~~n~AL~I~~vQ~eDSg~Y~LeVt   95 (112)
T 2ptt_B           24 PSNIQTKDVSVQWKKTEQGSHRKIEILNWYNDGPSWSNVSFSDIYGFD-----YGDFALSIKSAKLQDSGHYLLEIT   95 (112)
T ss_dssp             CSSCCCTTCEEEEEEECTTSSCEEEEEEESSSSCCBSSGGGGGTEEEC-----TTTCCEEESSCCGGGCEEEEEEEE
T ss_pred             cCCCCCCceeEEEEeecCCCCcceEEEEEeCCCccccceeeCCEEEEe-----cCCcEEEEEecCcccCceEEEEEe
Confidence            345667778899998   6656  678885554333446689999984     459999999999999999999885

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=98.29  E-value=3.1e-06  Score=56.89  Aligned_cols=59  Identities=10%  Similarity=0.105  Sum_probs=44.8

Q ss_pred             hhccceeeEEeecCCCcc-EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIP-VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p-~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.++.+.|-+.|.|.| .+.|++++........           ...+.+|.|.+++  |+|.|.|.+.+.
T Consensus       119 ~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~-----------~~~~~~L~i~~~~--d~G~Y~C~a~N~  178 (195)
T 2c5d_C          119 AANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPG-----------HGPQRSLHVPGLN--KTSSFSCEAHNA  178 (195)
T ss_dssp             CTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTT-----------SSCCEEEEECCCS--SCEEEEEEEEET
T ss_pred             cCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCC-----------cCCCCeEEEcccc--cCceEEEEEEcC
Confidence            346678889999999999 9999999854221110           0247889999997  899999999863

>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...

Probab=98.29  E-value=9.6e-06  Score=56.33  Aligned_cols=121  Identities=17%  Similarity=0.158  Sum_probs=68.4

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC---Cc-c------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP---TH-E------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~~-~------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      .+..+..+.+-|.+.+.....+.||+...   .. +      .....+|+.+..+ ......+|.|.+++.+|+|.|+|.
T Consensus        13 ~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~Rfs~~~~-~~~~~~sL~I~~lq~~DsG~Y~Ca   91 (208)
T 4ei6_A           13 SVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLN-KASLHVSLHIRDSQPSDSALYFCA   91 (208)
T ss_dssp             EEETTCCEECEEEECCTTEEEEEEEEECTTSCCEEEEECCSSEEEEETTEEEEEB-TTTTBC-CEECSCCGGGCEEEEEE
T ss_pred             EEECCCCEEEEEEEcCCCCceEEEEEeCCCCCcEEEEEECCCCcccCCcEEEEEc-CCCCEEEEEEEeCcccCCCcEEEE
Confidence            34567777888887765556778887531   10 0      0114677776422 334578999999999999999999


Q ss_pred             EEEecCCCCCCCCCcEEEEEEeEEe-cCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534           77 VVFLNRSPNSHKNGTWFHLDVHGVF-NDGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus        77 ~~~~~~~~~~~~~g~~~~l~c~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +............|....|...... ...+.+.+..-. +..+.+.|.+.+-..
T Consensus        92 ~~~~~~~~~~~~fG~GT~L~V~~~~~~~~PsVf~l~~~-~~~~tl~Cl~~~f~P  144 (208)
T 4ei6_A           92 ASEQNNYAQGLTFGLGTRVSVFPYIQNPDPAVYQLRDS-KSSDKSVCLFTDFDS  144 (208)
T ss_dssp             EEECCSSCCCCEECCCEEEEEECCCSSCCCEEEEEEBS-SCTTCEEEEEESCCT
T ss_pred             EecCCCccccccCCCCEEEEEeCcccCCCCEEEEcccC-CCCceEEEEeeccCC
Confidence            8631100001223444455444321 122344333222 234689999988654

>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus}

Probab=98.29  E-value=7.5e-07  Score=57.73  Aligned_cols=34  Identities=32%  Similarity=0.290  Sum_probs=27.6

Q ss_pred             cceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           43 KGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        43 ~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      .+|+.+..   ..++.+|.|.+++.+|+|.|+|.+..
T Consensus        64 ~~Rf~~~~---~~~~~~L~I~~~~~~Dsg~Y~C~~~~   97 (137)
T 3bdb_A           64 DSRFSMTV---NDQKFDLNIIGAREDDGGEYFCGEVE   97 (137)
T ss_dssp             CTTEEEEE---SSSBEEEEEESCCSTTCEEEEEEEEC
T ss_pred             CCcEEEEe---cCCEEEEEECCCCHHHCEEEEEEEcc
Confidence            57877643   24578999999999999999999863

>3nn8_A Engineered SCFV, heavy chain; beta barrel, antibody fragment, immunoglobulin, immune syste; 3.10A {Mus musculus}

Probab=98.29  E-value=1.2e-06  Score=55.56  Aligned_cols=39  Identities=18%  Similarity=0.181  Sum_probs=30.7

Q ss_pred             ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           40 EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        40 ~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+++|+.+..+ ....+.+|.|.+++.+|+|.|+|.+..
T Consensus        63 ~~~~~Rf~~~~~-~~~~~~sL~I~~~~~~Dsg~Y~C~~~~  101 (122)
T 3nn8_A           63 PSLKSRATLTVD-KTSSTVYLELRSLTSEDSSVYYCARRG  101 (122)
T ss_dssp             GGGTTCEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ccccCCEEEEEe-CCCCEEEEEECCCChhhCEEEEEEEEe
Confidence            456788887532 234578999999999999999999863

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=98.28  E-value=2.7e-06  Score=54.16  Aligned_cols=70  Identities=16%  Similarity=0.087  Sum_probs=44.7

Q ss_pred             hhccceeeEEeecCCC-ccEEEEecCCCC-----c------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            9 SIFQMLSVGDFADDED-IPVYIWYDSYPT-----H------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p-~p~~~w~k~~~~-----~------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      ..+..+.+-|.+.+.. ...+.||+...-     .      ....+.+|+.+..+ ...+..+|.|.+++.+|+|.|+|.
T Consensus        15 ~~G~svtL~C~~s~~~~~~~~~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~l~~~Dsg~Y~C~   93 (124)
T 2nms_A           15 LERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDN-QKNRTFTVTMEDLMKTDADTYWCG   93 (124)
T ss_dssp             ETTCCEEEEEEECTTCTTSEEEEEESSSSTTCEEEEECCSSSCCEEETTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             eCCCCEEEEeEEeCCcccccEEEEeCCCCCCceEEEEcCCcccceeCCCEEEEEc-CcCCEEEEEEeCCCHHHCEEEEEE
Confidence            4555666666655332 224666665320     0      11336788876432 345678999999999999999999


Q ss_pred             EEE
Q psy534           77 VVF   79 (145)
Q Consensus        77 ~~~   79 (145)
                      +..
T Consensus        94 ~~~   96 (124)
T 2nms_A           94 IEK   96 (124)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            863

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.28  E-value=1.9e-06  Score=58.07  Aligned_cols=62  Identities=11%  Similarity=0.075  Sum_probs=44.9

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN   81 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   81 (145)
                      ..+..+.+.|.+.+. .+.+.|+|++.... .    +...     ...+..|.|.+++.+|+|.|+|.+.+..
T Consensus       111 ~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~-~----~~~~-----~~~~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          111 ISGEKVTFYCRLDTA-TSMFLLLKEGRSSH-V----QRGY-----GKVQAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             ETTCEEEEEEECSSS-CSEEEEEEESSSCE-E----EEEE-----CSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             ccCCEEEEEEEcCCC-CCEEEEEECCcccc-c----cccC-----CCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence            456677888987764 46899999985421 1    1111     1347899999999999999999998653

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.28  E-value=1.4e-06  Score=61.48  Aligned_cols=69  Identities=17%  Similarity=0.132  Sum_probs=47.6

Q ss_pred             hhhccceeeEEeecCCCc-cEEEEecCC---CCcc--------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDI-PVYIWYDSY---PTHE--------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~-p~~~w~k~~---~~~~--------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      ...+.++.+.|-+.+.+. +.+.||+..   ....        ...+.+|+.....   ....+|.|.+++.+|+|.|+|
T Consensus       161 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~L~I~~v~~~DsG~Y~C  237 (256)
T 3juy_B          161 LSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGS---GTDFTLTITRVEPEDFALYYC  237 (256)
T ss_dssp             ECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE---TTEEEEEESSCCGGGCSEEEE
T ss_pred             EeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEcc---CCEEEEEECCCCHhHCEEEEE
Confidence            345677888899988776 899999842   1110        0113455554321   236779999999999999999


Q ss_pred             EEEE
Q psy534           76 KVVF   79 (145)
Q Consensus        76 ~~~~   79 (145)
                      .+.+
T Consensus       238 ~~~~  241 (256)
T 3juy_B          238 QVYG  241 (256)
T ss_dssp             EECC
T ss_pred             EEee
Confidence            9964

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.27  E-value=2.3e-06  Score=60.54  Aligned_cols=69  Identities=16%  Similarity=0.142  Sum_probs=47.5

Q ss_pred             hhhccceeeEEeecCCCcc-----EEEEecC--CCCcc---------cccccceEEEecCCCCCCeeeEEEcccCCCCCE
Q psy534            8 KSIFQMLSVGDFADDEDIP-----VYIWYDS--YPTHE---------AEEYKGRISRVDKESPFGMASLNLTKIRESDQG   71 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p-----~~~w~k~--~~~~~---------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G   71 (145)
                      ...+.++.+.|-+.|.|.+     .+.|||.  +....         .....+|+....   .....+|.|.+++.+|+|
T Consensus       133 v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~DsG  209 (256)
T 1nqb_A          133 VSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSG---SGTDFTLKISRVEAEDLG  209 (256)
T ss_dssp             ECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCE
T ss_pred             EecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEc---cCCEEEEEECCCChHHCE
Confidence            4566788889999988765     8999993  32210         011234554321   124678999999999999


Q ss_pred             EEEEEEEE
Q psy534           72 WYECKVVF   79 (145)
Q Consensus        72 ~Y~C~~~~   79 (145)
                      .|+|.+.+
T Consensus       210 ~Y~C~a~~  217 (256)
T 1nqb_A          210 VYYCFQGS  217 (256)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEcc
Confidence            99999964

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.27  E-value=2.4e-06  Score=56.19  Aligned_cols=57  Identities=9%  Similarity=0.072  Sum_probs=44.2

Q ss_pred             hccceeeEEeec-CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFAD-DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+.++.+.|.+. +.|.+.+.|++++...         ...     ..+..|.|.+++.+|+|.|.|.+.+.
T Consensus        99 ~g~~~~l~C~~~~~~p~~~~~W~~~g~~~---------~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~  156 (170)
T 3ry4_A           99 EGETIMLRCHSWKDKPLVKVTFFQNGKSQ---------KFS-----HLDPTFSIPQANHSHSGDYHCTGNIG  156 (170)
T ss_dssp             TTCCEEEEEEEGGGCCEEEEEEEETTEEE---------EEE-----SSCCEEEESSCCGGGCEEEEEEEEET
T ss_pred             cCCeEEEEEECCCCCCCceEEEEECCeEc---------ccc-----CCCCeEEEEeccccCCEEEEEEEEeC
Confidence            456788889985 6788999999987431         111     23678999999999999999999763

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=98.27  E-value=1.9e-06  Score=54.84  Aligned_cols=70  Identities=19%  Similarity=0.225  Sum_probs=46.9

Q ss_pred             HhhhccceeeEEeecCCC--ccEEEEecCCC---Cc--------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEE
Q psy534            7 VKSIFQMLSVGDFADDED--IPVYIWYDSYP---TH--------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWY   73 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p--~p~~~w~k~~~---~~--------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   73 (145)
                      .+..+..+.+-|.+.+.+  ...+.||+...   ..        ....+.+|+.+..   ...+.+|.|.+++.+|+|.|
T Consensus        11 ~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~---~~~~~sL~I~~l~~~DsG~Y   87 (123)
T 3t0v_A           11 SGTPGQKVTIFCSGSSSNVEDNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGSK---SGTSASLAISGLRSEDEADY   87 (123)
T ss_dssp             EECTTCCEEEEEECCTTTTTTSCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEECSCCGGGCEEE
T ss_pred             EEcCCCCEEEEEecCCCccCCCeEEEEEECCCCCCEEEEEECCcCCCCCcCCEEEEc---cCCEEEEEECCCCHHHCEEE
Confidence            345677778888877543  35677887531   10        0122456776532   24578999999999999999


Q ss_pred             EEEEEE
Q psy534           74 ECKVVF   79 (145)
Q Consensus        74 ~C~~~~   79 (145)
                      +|.+..
T Consensus        88 ~C~~~~   93 (123)
T 3t0v_A           88 YCLSWD   93 (123)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            999864

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.26  E-value=2.1e-06  Score=58.83  Aligned_cols=69  Identities=10%  Similarity=0.032  Sum_probs=45.6

Q ss_pred             hhccceeeEEee-cCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFA-DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~-~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+..+.+.|-+ .|.|.|.+.|++++...+.......... ..  ...-..|.|.+++.+|+|.|.|.+.+.
T Consensus       123 ~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~-~~--~~~~~~l~i~~v~~~d~G~Y~C~a~n~  192 (222)
T 4i0k_A          123 RPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMA-NE--RGLFDVHSVLRVVLGANGTYSCLVRNP  192 (222)
T ss_dssp             -CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEE-CT--TSCEEEEEEEEEECCTTCEEEEEEEET
T ss_pred             cCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEc-CC--CCeEEEEEEEEEEeCCCCEEEEEEECC
Confidence            456788899999 6889999999996544332221111111 10  111234789999999999999999764

>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}

Probab=98.26  E-value=2.2e-06  Score=54.54  Aligned_cols=70  Identities=13%  Similarity=0.043  Sum_probs=44.4

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC--------------CcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP--------------THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWY   73 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~--------------~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   73 (145)
                      +..+..+.+-|.+.......+.||+...              ......+.+|+.+..+  .....+|.|.+++.+|+|.|
T Consensus        17 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~Rf~~~~~--~~~~~sL~I~~~~~~Dsg~Y   94 (125)
T 3r8b_B           17 AVTGEKVTLSCKQTNSYFNNMYWYRQDTGHELRLIFMSHGIRNVEKGDIPDGYKASRP--SQENFSLILELATPSQTSVY   94 (125)
T ss_dssp             EETTCCEEEEEEEESCCCSEEEEEEECTTSCEEEEEEESSTTCCEECSSCTTCEEEEE--ETTEEEEEETTCCGGGCEEE
T ss_pred             EcCCCcEEEEEEECCCCCCeEEEEEECCCCCcEEEEEEcCCccccCCCCCCceEEEec--CCCEEEEEECCCChhhCEEE
Confidence            3455666666666544334566765421              1111235567765422  14578999999999999999


Q ss_pred             EEEEEE
Q psy534           74 ECKVVF   79 (145)
Q Consensus        74 ~C~~~~   79 (145)
                      +|.+..
T Consensus        95 ~C~~~~  100 (125)
T 3r8b_B           95 FCASGG  100 (125)
T ss_dssp             EEEEEE
T ss_pred             EEEEcC
Confidence            999863

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=1.5e-06  Score=52.57  Aligned_cols=26  Identities=42%  Similarity=0.629  Sum_probs=24.2

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +..|.|.+++.+|+|.|+|.|.|..|
T Consensus        61 ~~~L~i~~v~~~d~G~Y~C~a~n~~g   86 (100)
T 2edj_A           61 QGTLQIKNLRISDTGTYTCVATSSSG   86 (100)
T ss_dssp             TCCEEEESCCTTTCCEEEEEEECSSC
T ss_pred             CCEEEEccCCcccCEEEEEEEEcCCC
Confidence            34899999999999999999999998

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.26  E-value=1.8e-06  Score=60.43  Aligned_cols=71  Identities=18%  Similarity=0.218  Sum_probs=49.0

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC-Ccc---------------cccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP-THE---------------AEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~-~~~---------------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      ...+.++.+.|.+.+.+  .+.+.||++.. ...               ...+.+|+.+..+ ......+|.|.+++.+|
T Consensus       139 v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~v~~~D  217 (247)
T 1svz_A          139 KKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLD-TSTSTAFLQINNLKNED  217 (247)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEE-GGGTEEEEEECSCCGGG
T ss_pred             ecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEe-cCCCEEEEEECCCChhH
Confidence            44566788889998874  56899998641 100               1123566665321 12336799999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|+|.+.+
T Consensus       218 sG~Y~C~a~n  227 (247)
T 1svz_A          218 TATYFCVRDR  227 (247)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEec
Confidence            9999999986

>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC, H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A {Mus musculus} SCOP: b.1.1.1

Probab=98.26  E-value=1.7e-06  Score=56.52  Aligned_cols=72  Identities=15%  Similarity=0.152  Sum_probs=45.5

Q ss_pred             HhhhccceeeEEeecCCC-ccEEEEecCCC---C--c-------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEE
Q psy534            7 VKSIFQMLSVGDFADDED-IPVYIWYDSYP---T--H-------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWY   73 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p-~p~~~w~k~~~---~--~-------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   73 (145)
                      .+..+..+.+-|.+.+.. ...+.||+...   .  .       ......+|+.+..+ ......+|.|.+++.+|+|.|
T Consensus        11 ~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rfs~~~~-~~~~~~sL~I~~~~~~Dsg~Y   89 (142)
T 2ol3_A           11 SVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQ-KPKSSIGLIITATQIEDSAVY   89 (142)
T ss_dssp             EEETTCCEEECCBCCCCCSSCEEEEEEECTTCCEEEEEEEETTCSSCCEETTEEECCB-GGGTBCCEEECSCCTTTCEEE
T ss_pred             EEecCCCEEEEEEecCCcCCceEEEEEeCCCCCcEEEEEECCCCcccccCCCEEEEec-CCCCEEEEEECCCChhhCEEE
Confidence            345566667777765443 34677776431   0  0       01223567776321 234578899999999999999


Q ss_pred             EEEEEE
Q psy534           74 ECKVVF   79 (145)
Q Consensus        74 ~C~~~~   79 (145)
                      +|.+..
T Consensus        90 ~C~~~~   95 (142)
T 2ol3_A           90 FCAMRG   95 (142)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            999874

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.25  E-value=2.5e-06  Score=59.74  Aligned_cols=70  Identities=19%  Similarity=0.180  Sum_probs=48.4

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC-Ccc--------------cccccceEEEecCCCCCCeeeEEEcccCCCCC
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP-THE--------------AEEYKGRISRVDKESPFGMASLNLTKIRESDQ   70 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~-~~~--------------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   70 (145)
                      ...+.++.+.|.+.|.|  .+.+.||++.. ...              .+.+.+|+.+..+ ......+|.|.+++.+|+
T Consensus       134 v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~v~~~D~  212 (242)
T 2znx_A          134 VKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRD-TSKNQYYLDLNSVTTEDT  212 (242)
T ss_dssp             ECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEE-TTTTEEEEEECSCCGGGC
T ss_pred             ecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEec-CCCCEEEEEECCCCcCcC
Confidence            34567788889998876  57899998531 111              1123566665321 123467999999999999


Q ss_pred             EEEEEEEE
Q psy534           71 GWYECKVV   78 (145)
Q Consensus        71 G~Y~C~~~   78 (145)
                      |.|+|.+.
T Consensus       213 G~Y~C~a~  220 (242)
T 2znx_A          213 ATYYCANX  220 (242)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEecc
Confidence            99999996

>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha, immunoglobulin superfamily, transmembrane, phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo sapiens} PDB: 2jjt_C* 2vsc_A*

Probab=98.25  E-value=3.6e-07  Score=58.64  Aligned_cols=69  Identities=17%  Similarity=0.138  Sum_probs=45.8

Q ss_pred             hccceeeEEeecCCC-----ccEEEEecCCCCc-----------ccccccceEEEecCCCCCCeeeEEEcccCC-CCCEE
Q psy534           10 IFQMLSVGDFADDED-----IPVYIWYDSYPTH-----------EAEEYKGRISRVDKESPFGMASLNLTKIRE-SDQGW   72 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p-----~p~~~w~k~~~~~-----------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~-~D~G~   72 (145)
                      ++..+.+.|.....+     .-.+.|.+++...           ..++|. |..++.+++..++.+|+|.+++. +|+|.
T Consensus        15 ~n~~vtLpC~l~~~~~~~~~~m~V~W~~~~~~i~~~~G~~~~~~q~~~~~-~a~l~~~~l~~GnaSL~i~~v~~~sD~G~   93 (127)
T 2jjs_C           15 GNDTVVIPCFVTNMEAQNTTEVYVKWKFKGRDIYTFDGALNKSTVPTDFS-SAKIEVSQLLKGDASLKMDKSDAVSHTGN   93 (127)
T ss_dssp             TCSEEEECCBBSSCCCSSGGGEEEEEEETTEEEEEEEGGGTEEECCGGGT-TCBCCGGGGGGTBCCEEEEHHHHHTSCEE
T ss_pred             cCCCEEEEEEeCCcCCCCcceEEEEEEECCeEeEeeCCceeecccccccc-ceEechhhhccCcEEEEEcccccccCCcE
Confidence            445555666654321     2345666554221           123355 46677777888999999999998 69999


Q ss_pred             EEEEEEE
Q psy534           73 YECKVVF   79 (145)
Q Consensus        73 Y~C~~~~   79 (145)
                      |+|++..
T Consensus        94 YtC~v~~  100 (127)
T 2jjs_C           94 YTCEVTE  100 (127)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999974

>1rjc_A 1D2L19, camelid heavy chain antibody; beta sandwich, immunoglobulin fold, protein-protein hetero C alpha-beta orthogonal bundle, immune system-hydrolase compl; 1.40A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1ri8_A 1xfp_A 1jtt_A 2x6m_A 1zmy_A 1f2x_K

Probab=98.25  E-value=3.1e-06  Score=54.90  Aligned_cols=71  Identities=15%  Similarity=0.223  Sum_probs=45.3

Q ss_pred             hhhccceeeEEeecCC--CccEEEEecCCC---C-------------cccccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDE--DIPVYIWYDSYP---T-------------HEAEEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~--p~p~~~w~k~~~---~-------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      +..+..+.+-|.+.+.  ....+.||+...   +             .....+++|+.+..+ ....+.+|.|.+++.+|
T Consensus        12 v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~-~~~~~~sL~I~~~~~~D   90 (137)
T 1rjc_A           12 VQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLD-NAKNTLYLQMNSLKPED   90 (137)
T ss_dssp             ECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEE-C--CEEEEEECSCCGGG
T ss_pred             EecCCCEEEEEEecCCcCCCcEEEEEEECCCCCCEEEEEEECCCCceecCcccCCcEEEEEc-CCCCEEEEEECCCCHHH
Confidence            4556677777776542  245677776431   1             011235678876532 23457899999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|.|.+..
T Consensus        91 sg~Y~C~~~~  100 (137)
T 1rjc_A           91 TAMYYCAADT  100 (137)
T ss_dssp             CEEEEEEECC
T ss_pred             CEEEEEEEEc
Confidence            9999998863

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.25  E-value=2e-06  Score=51.88  Aligned_cols=25  Identities=44%  Similarity=0.704  Sum_probs=23.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus        64 ~~L~i~~v~~~D~G~Y~C~a~N~~g   88 (99)
T 2yr3_A           64 AELHIQDALPEDHGTYTCLAENALG   88 (99)
T ss_dssp             EEEEECSCCTTCCBCEEEEEECSSC
T ss_pred             EEEEECCCChhhCEEEEEEEEECCC
Confidence            4799999999999999999999998

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.25  E-value=3.7e-06  Score=59.35  Aligned_cols=69  Identities=10%  Similarity=0.038  Sum_probs=46.0

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCC-cc-------------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPT-HE-------------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE   74 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~-~~-------------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   74 (145)
                      ..+.++.+.|.+.+. .+.+.||+.... ..             ...+.+|+.....  .....+|.|.+++.+|+|.|+
T Consensus       150 ~~G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~L~I~~v~~~DsG~Y~  226 (256)
T 3tf7_C          150 VTGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRT--TQEDFFLTLESASPSQTSLYF  226 (256)
T ss_dssp             ETTCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECC--SSSBCEEEESSCCGGGCEEEE
T ss_pred             eCCCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeC--CCCeEEEEECCCCHHHCEEEE
Confidence            356677788888876 678999984311 00             0112345444321  234678999999999999999


Q ss_pred             EEEEEe
Q psy534           75 CKVVFL   80 (145)
Q Consensus        75 C~~~~~   80 (145)
                      |.+.+.
T Consensus       227 C~a~n~  232 (256)
T 3tf7_C          227 CASSDA  232 (256)
T ss_dssp             EEEEEE
T ss_pred             EEecCC
Confidence            999753

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.25  E-value=2.1e-06  Score=60.43  Aligned_cols=69  Identities=17%  Similarity=0.155  Sum_probs=47.8

Q ss_pred             hhhccceeeEEeecCCCcc-EEEEecCC--CC-c--------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIP-VYIWYDSY--PT-H--------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p-~~~w~k~~--~~-~--------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      ...+.++.+.|-+.+.+.+ .+.||++.  .. .        ....+.+|+....   .....+|.|.+++.+|+|.|+|
T Consensus       153 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~D~G~Y~C  229 (257)
T 3gkz_A          153 ASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSG---SGTSYSLTISSMEAEDAASYFC  229 (257)
T ss_dssp             ECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCEEEEE
T ss_pred             EeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEec---CCCEEEEEECCCChHHCEEEEE
Confidence            3467788888999988777 89999843  11 0        0112335555422   1246779999999999999999


Q ss_pred             EEEE
Q psy534           76 KVVF   79 (145)
Q Consensus        76 ~~~~   79 (145)
                      .+.+
T Consensus       230 ~~~~  233 (257)
T 3gkz_A          230 HQWS  233 (257)
T ss_dssp             EECS
T ss_pred             EEcc
Confidence            9963

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=98.24  E-value=2.1e-06  Score=58.84  Aligned_cols=57  Identities=9%  Similarity=0.069  Sum_probs=44.4

Q ss_pred             hhccceeeEEeecC-CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.++.+.|.+.+ .|.+.+.|++++...         ...     ..+.+|.|.+++.+|+|.|+|.+.+
T Consensus       101 ~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~---------~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~n  158 (204)
T 3sgj_C          101 KEEDPIHLRCHSWKNTALHKVTYLQNGKGR---------KYF-----HHNSDFYIPKATLKDSGSYFCRGLV  158 (204)
T ss_dssp             ETTCCEEEEEEEGGGCCCEEEEEEETTEEE---------EEE-----EECCCEEESSCCGGGCEEEEEEEEE
T ss_pred             eCCCcEEEEEEecCCCCCceEEEEECCcEe---------ecc-----cCCceEEECcCCcccCEEEEEEEEe
Confidence            35677888999974 477899999998531         111     1267899999999999999999986

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=98.24  E-value=1.4e-06  Score=52.97  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=23.5

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus        64 ~~L~i~~~~~~D~G~Y~C~a~N~~G   88 (103)
T 3qp3_A           64 LTLEILDCHTDDSGTYRAVCTNYKG   88 (103)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEEcCCCcccCEEEEEEEEeCCC
Confidence            3699999999999999999999998

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=98.24  E-value=2.6e-06  Score=52.86  Aligned_cols=58  Identities=9%  Similarity=0.041  Sum_probs=40.0

Q ss_pred             hhhccceeeEEeecCCCcc-----EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIP-----VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p-----~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.++.+.|...+.+.+     .+.|||++... .        ..     .....|.|.+|+.+|+|.|+|.+.+
T Consensus        19 v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l-~--------~~-----~~~~~l~i~~v~~~dsG~Y~C~~~~   81 (108)
T 4hwn_A           19 PQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIV-Q--------SR-----GLSSEFQIPTASEDHSGSYWCEAAT   81 (108)
T ss_dssp             CBTTCCEEEEEEC---------CCEEEEEETTEEE-E--------EE-----ESCCEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCc-c--------CC-----CcccEEEeCccCcccCeEEEEEEEe
Confidence            3457788899988766544     49999987431 1        00     1267899999999999999999974

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.23  E-value=2.6e-06  Score=52.87  Aligned_cols=25  Identities=32%  Similarity=0.387  Sum_probs=23.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus        63 ~~L~I~~v~~~D~G~Y~C~a~N~~g   87 (114)
T 2cqv_A           63 SKLTILAARQEHCGCYTLLVENKLG   87 (114)
T ss_dssp             EEEEETTCCTTTCEEEEEEEECSSC
T ss_pred             EEEEECCCChhcCEEEEEEEEECCC
Confidence            4799999999999999999999998

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.23  E-value=5e-07  Score=61.04  Aligned_cols=54  Identities=11%  Similarity=0.015  Sum_probs=41.4

Q ss_pred             hccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      .+..+.+.|-+   |.|.+.|+|++.....  .           .....+|.|.+++.+|+|.|+|.|.|
T Consensus       121 ~G~~v~l~C~~---p~p~i~W~k~g~~i~~--~-----------~~~~~~L~i~~v~~~D~G~Y~C~a~N  174 (186)
T 1jbj_A          121 GDGSVLLTCGL---TDKTIKWLKDGSIISP--L-----------NATKNTWNLGNNAKDPRGTYQCQGAK  174 (186)
T ss_dssp             SSCEEEEECSS---SCSCEEEEETTEECCC--S-----------SCCSSCCEEEETTSCCEEEEEEEESS
T ss_pred             CCCeEEEEeeC---CCCeEEEEECCEECcc--c-----------CCCcceEEECCCCcCcCEEEEEEEEc
Confidence            56667777766   8899999999854210  0           12378899999999999999999964

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=98.23  E-value=9.4e-07  Score=59.26  Aligned_cols=51  Identities=8%  Similarity=-0.027  Sum_probs=39.5

Q ss_pred             ceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           13 MLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        13 ~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+.+.|-+.|.|.|.+.|++++... .        .        ...+.|.+++.+|+|.|.|.|.+.
T Consensus       112 ~v~L~C~~~g~p~p~i~W~~~g~~l-~--------~--------~~~~~i~~~~~~d~G~Y~C~a~N~  162 (176)
T 1hng_A          112 NATLTCEVLEGTDVELKLYQGKEHL-R--------S--------LRQKTMSYQWTNLRAPFKCKAVNR  162 (176)
T ss_dssp             TTEEEEECSSCSSCEEEEEETTEEE-E--------E--------ESSSEEEEECSCCSSCEEEEEEET
T ss_pred             cEEEEEEecCCCCcEEEEEECCEEC-C--------C--------CCcEEEEEEEccCCeEEEEEEEec
Confidence            4778898999999999999987431 1        1        222566788999999999999864

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=98.22  E-value=3.2e-06  Score=54.71  Aligned_cols=69  Identities=17%  Similarity=0.231  Sum_probs=48.1

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecC-C--CC-cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDS-Y--PT-HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~-~--~~-~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ....+..+.+-|.+.+. .+.+.||+. .  .. ..-....+|+....   .....+|.|.+++.+|+|.|+|.+..
T Consensus        29 ~v~~G~svtL~C~~s~~-~~~v~Wyrq~~~g~~~~~l~~~~~rf~~~~---~~~~~~L~I~~~~~~Dsg~Y~C~~~~  101 (134)
T 3kg5_A           29 ARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQLKLEKGRMEESQ---NESLATLTIQGIRFEDNGIYFCQQKC  101 (134)
T ss_dssp             EEETTCCEEEEEECCCT-TCCCEEEEESSSSSCCEECCCCTTTEEEEE---CSSEEEEEECSCCTTTCEEEEEEEEC
T ss_pred             EEeCCCCEEEEEEECCC-CceEEEEEECCCCCCcEEEEEECCeEEEEc---cCCEEEEEECCCCcCcCEEEEEEEEc
Confidence            45677888899988765 467889987 3  11 10011245665432   23578999999999999999999864

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.22  E-value=2.7e-06  Score=60.50  Aligned_cols=71  Identities=11%  Similarity=0.104  Sum_probs=49.1

Q ss_pred             hhhccceeeEEeecCCCc--cEEEEecCCC---Cc-cc------------ccccceEEEecCCCCCCeeeEEEcccCCCC
Q psy534            8 KSIFQMLSVGDFADDEDI--PVYIWYDSYP---TH-EA------------EEYKGRISRVDKESPFGMASLNLTKIRESD   69 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~--p~~~w~k~~~---~~-~~------------~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D   69 (145)
                      ...+.++.+.|.+.+.+.  +.+.||++..   .. +.            ..+.+|+.+..+ ......+|.|.+++.+|
T Consensus       150 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~v~~~D  228 (264)
T 2gjj_A          150 VKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVD-TSSSTAFMQLNSLTSED  228 (264)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEE-TTTTEEEEEECSCCGGG
T ss_pred             EcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEc-CCCCEEEEEECcCCccc
Confidence            345667888899888764  7899998741   11 10            123456655321 22347899999999999


Q ss_pred             CEEEEEEEEE
Q psy534           70 QGWYECKVVF   79 (145)
Q Consensus        70 ~G~Y~C~~~~   79 (145)
                      +|.|+|.+.+
T Consensus       229 sG~Y~C~a~n  238 (264)
T 2gjj_A          229 SADYYCVRSG  238 (264)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEEEec
Confidence            9999999985

>1zvy_A Immunoglobulin heavy chain antibody variable DOMA; beta sandwich, immunoglobulin fold, protein protein heteroco alpha-beta orthogonal bundle, hydrolase-immune system compl; 1.63A {Camelus dromedarius} SCOP: b.1.1.1

Probab=98.22  E-value=3e-06  Score=54.89  Aligned_cols=72  Identities=19%  Similarity=0.307  Sum_probs=47.0

Q ss_pred             HhhhccceeeEEeecCC--CccEEEEecCCC---C-------------cccccccceEEEecCCCCCCeeeEEEcccCCC
Q psy534            7 VKSIFQMLSVGDFADDE--DIPVYIWYDSYP---T-------------HEAEEYKGRISRVDKESPFGMASLNLTKIRES   68 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~--p~p~~~w~k~~~---~-------------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~   68 (145)
                      .+..+..+.+-|.+.+.  ....+.||+...   +             .....+++|+.+..+ ......+|.|.+++.+
T Consensus        11 ~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~-~~~~~~sL~I~~~~~~   89 (136)
T 1zvy_A           11 SVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQD-KAKNMAYLRMDSVKSE   89 (136)
T ss_dssp             ECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEE-GGGTEEEEEECSCCGG
T ss_pred             EEeCCCCEEEEEEecCCCCCCcEEEEEEECCCCCCEEEEEEeCCCCceeeCcccCCcEEEEEc-CCCCEEEEEECCCChh
Confidence            34566777777777642  235677776531   1             011235678876432 2245789999999999


Q ss_pred             CCEEEEEEEEE
Q psy534           69 DQGWYECKVVF   79 (145)
Q Consensus        69 D~G~Y~C~~~~   79 (145)
                      |+|.|+|.+..
T Consensus        90 Dsg~Y~C~~~~  100 (136)
T 1zvy_A           90 DTAIYTCGATR  100 (136)
T ss_dssp             GCEEEEEEECS
T ss_pred             HCEEEEEEEEe
Confidence            99999998863

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.22  E-value=6.5e-07  Score=61.50  Aligned_cols=60  Identities=10%  Similarity=0.039  Sum_probs=41.1

Q ss_pred             ccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEccc-CCCCCEEEEEEEEE
Q psy534           11 FQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKI-RESDQGWYECKVVF   79 (145)
Q Consensus        11 ~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v-~~~D~G~Y~C~~~~   79 (145)
                      +.++.+.|-  |.|.|.+.|++++... ......+. +.     ..+++|.|.++ +.+|+|.|+|.+.+
T Consensus       128 G~~v~L~C~--g~p~p~i~W~k~~~~l-~~~~~~~~-~~-----~~~~~L~I~~v~~~~D~G~Y~C~A~N  188 (204)
T 1sy6_A          128 GTTVILTCP--QYPGSEILWQHNDKNI-GGDEDDKN-IG-----SDEDHLSLKEFSELEQSGYYVCYPRG  188 (204)
T ss_dssp             TTEEEEECS--CCCSSCEEEEETTEEE-SCCTTCTT-EE-----EETTEEEETTCCHHHHCEEEEEEETT
T ss_pred             CCcEEEEcC--CCCCCceEEEECCEEC-CCccCCce-Ee-----cCCCEEEEeeCCccccCEEEEEEecc
Confidence            444555665  8899999999997532 11111111 11     12789999999 99999999999964

>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens}

Probab=98.21  E-value=1.2e-05  Score=55.43  Aligned_cols=116  Identities=19%  Similarity=0.094  Sum_probs=66.7

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC---Cc--------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP---TH--------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~~--------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      +..+..+.+-|.+.+.....+.||+...   ..        ....+.+|+.+.. +......+|.|.+++.+|+|.|+|.
T Consensus        12 v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~-~~~~~~~sL~I~~l~~~DsG~Y~Ca   90 (199)
T 3gsn_A           12 VQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATL-NTKEGYSYLYIKGSQPEDSATYLCA   90 (199)
T ss_dssp             EETTCCCEEEEECCCTTCCCEEEEEECTTSCCEEEEEECSTTCCCEETTEECCC-BTTTTEEEEEBSSCCGGGCEEEEEE
T ss_pred             EeCCCCEEEEEEEcCCCCCEEEEEEECCCCCcEEEEEECCCCCccccCceEEEE-CCCCCEEEEEEccCcccCCccEEEE
Confidence            4556677777777654344677776431   10        0123467776532 1334578999999999999999999


Q ss_pred             EEEecCCCCCCCCCcEEEEEEeEE-ecCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534           77 VVFLNRSPNSHKNGTWFHLDVHGV-FNDGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus        77 ~~~~~~~~~~~~~g~~~~l~c~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +...    .....|....|..... ....+.+.+..-. +....+.|.+..-..
T Consensus        91 ~~~~----~~~~fG~GT~L~V~~~~~~~~P~V~~~~~~-~~~~tl~Cl~~gf~P  139 (199)
T 3gsn_A           91 RNTG----NQFYFGTGTSLTVIPNIQNPDPAVYQLRDS-KSSDKSVCLFTDFDS  139 (199)
T ss_dssp             EESS----SCEEECSCEEEEEECCCSSCCCEEEECCCS-SSSSSCCEEEETCCT
T ss_pred             Eccc----ccccCCCCEEEEEecccCCCCCEEEEcccC-CCCceEEEEeecccC
Confidence            8521    1122244444444432 1222344443322 234679999987654

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.19  E-value=5.7e-06  Score=56.30  Aligned_cols=59  Identities=10%  Similarity=-0.015  Sum_probs=45.3

Q ss_pred             hccceeeEEeecC----CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFADD----EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~g----~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+.++.+.|-+.|    .|.|.+.|++++.....    .+.        .....|.|..+..+|.|.|+|.|.+.
T Consensus       137 ~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~----~~~--------~~~~~L~i~~~~~~~~g~Y~C~a~n~  199 (214)
T 2zg1_A          137 SGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLD----PET--------TRSSELTLTPRPEDHGTNLTCQMKRQ  199 (214)
T ss_dssp             TTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSC----SSC--------CCSSEEEECCCTTCCSCEEEEEEECC
T ss_pred             CCCeEEEEEEeccCCCCCCCceEEEeCCCCccCC----CCc--------eeEEEEEEecccHHcCcEEEEEEEeC
Confidence            4667889999876    48899999999754211    111        23788999999999999999999863

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.19  E-value=9.2e-07  Score=60.33  Aligned_cols=70  Identities=19%  Similarity=0.105  Sum_probs=44.8

Q ss_pred             hccceeeEEeecC-CCcc-EEEEecCCCCcccccccceEEEec-CCCC-CCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFADD-EDIP-VYIWYDSYPTHEAEEYKGRISRVD-KESP-FGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~g-~p~p-~~~w~k~~~~~~~~~~~~R~~~~~-~~~~-~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+..+.+.|.+.| .|.+ .+.|++++... ............ .+.. ....+|.|.+++.+|+|.|.|.|.+.
T Consensus       126 ~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~-~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~  199 (213)
T 3d9a_L          126 TSGGASVVCFLNNFYPKDINVKWKIDGSER-QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHK  199 (213)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEEE-CTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECT
T ss_pred             CCCcEEEEEEEeeecCCceEEEEEcCCCcC-cceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEc
Confidence            4557889999987 6665 89999987532 211000011100 0000 01458999999999999999999864

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.19  E-value=2.9e-06  Score=61.22  Aligned_cols=69  Identities=14%  Similarity=0.227  Sum_probs=47.7

Q ss_pred             hhhccceeeEEeecCCCcc------EEEEecCCC---Cc-cc-------ccccceEEEecCCCCCCeeeEEEcccCCCCC
Q psy534            8 KSIFQMLSVGDFADDEDIP------VYIWYDSYP---TH-EA-------EEYKGRISRVDKESPFGMASLNLTKIRESDQ   70 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p------~~~w~k~~~---~~-~~-------~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   70 (145)
                      ...+.++.+.|-+.+.+.+      .+.||++..   .. +.       ..+.+|+....   .....+|.|.+++.+|+
T Consensus       171 v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~Ds  247 (291)
T 2gki_A          171 VSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSG---SGTDFTLTISSVQAEDL  247 (291)
T ss_dssp             EETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGC
T ss_pred             EcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEe---cCCEEEEEECCCCHHHC
Confidence            4456778888999888765      899998641   10 00       11234555421   12357899999999999


Q ss_pred             EEEEEEEEE
Q psy534           71 GWYECKVVF   79 (145)
Q Consensus        71 G~Y~C~~~~   79 (145)
                      |.|+|.+.+
T Consensus       248 G~Y~C~a~~  256 (291)
T 2gki_A          248 AVYYCKQSY  256 (291)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEcc
Confidence            999999975

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1

Probab=98.18  E-value=4.8e-06  Score=52.85  Aligned_cols=71  Identities=20%  Similarity=0.265  Sum_probs=45.9

Q ss_pred             hhhccceeeEEeecCC--CccEEEEecCCCC-----c------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEE
Q psy534            8 KSIFQMLSVGDFADDE--DIPVYIWYDSYPT-----H------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE   74 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~--p~p~~~w~k~~~~-----~------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   74 (145)
                      +..+..+.+-|.+...  ....+.||+....     .      ....+.+|+.+.. +...+..+|.|.+++.+|+|.|+
T Consensus        22 ~~~G~svtL~C~~s~~~~~~~~v~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~-~~~~~~~sL~I~~l~~~Dsg~Y~  100 (122)
T 1hkf_A           22 SVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWD-DPDAGFFTVTMTDLREEDSGHYW  100 (122)
T ss_dssp             ECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEE-ETTTTEEEEEECSCCGGGCEEEE
T ss_pred             EecCCCEEEEeEccCCCCcccEEEEEcCCCCCCceEEEEeCCeEeEeecCcEEEEE-cCcCCEEEEEEeCCCHHHCEEEE
Confidence            4455666666766532  2245667665310     0      1133568887643 23456889999999999999999


Q ss_pred             EEEEE
Q psy534           75 CKVVF   79 (145)
Q Consensus        75 C~~~~   79 (145)
                      |.+..
T Consensus       101 C~v~~  105 (122)
T 1hkf_A          101 CRIYR  105 (122)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            99863

>3k74_B Nanobody; immunoglobulin, antibiotic resista methotrexate resistance, NADP, one-carbon metabolism, oxidoreductase, trimethoprim resistance; 1.95A {Lama glama}

Probab=98.18  E-value=5.6e-06  Score=51.81  Aligned_cols=38  Identities=21%  Similarity=0.321  Sum_probs=29.4

Q ss_pred             ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           40 EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        40 ~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+++|+.+..+ ......+|.|.+++.+|+|.|+|.+.
T Consensus        60 ~~~~~Rf~~~~~-~~~~~~sL~I~~~~~~Dsg~Y~C~~~   97 (115)
T 3k74_B           60 ESVKGRFTISRD-NAKNTLYLQMNSLTSEDTAVYYCAKD   97 (115)
T ss_dssp             GGGTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEES
T ss_pred             ccccccEEEEEc-CCCCEEEEEECCCChHhCEEEEEEEE
Confidence            346788876432 23357899999999999999999875

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.18  E-value=2.9e-06  Score=51.14  Aligned_cols=24  Identities=29%  Similarity=0.533  Sum_probs=23.3

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|+|.|.|..|
T Consensus        63 ~L~i~~v~~~D~G~Y~C~a~n~~g   86 (100)
T 2kdg_A           63 SLIFEVVRASDAGAYACVAKNRAG   86 (100)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EEEECCCCcccCEEEEEEEEcCCC
Confidence            799999999999999999999998

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=98.18  E-value=2e-06  Score=52.60  Aligned_cols=27  Identities=41%  Similarity=0.601  Sum_probs=21.0

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+..|.|.+++.+|+|.|+|.|.|..|
T Consensus        62 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g   88 (108)
T 3kvq_A           62 GNRNLTIRRVRKEDEGLYTCQACSVLG   88 (108)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEC----
T ss_pred             CCcEEEEeecCcccCEEEEEEEEeCCC
Confidence            345899999999999999999999998

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=98.17  E-value=2.3e-06  Score=51.51  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=23.2

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|+|.|.|..|
T Consensus        63 ~L~i~~v~~~D~G~Y~C~a~N~~g   86 (99)
T 1g1c_A           63 ELVIRDVTGEDSASIMVKAINIAG   86 (99)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTE
T ss_pred             EEEECCCCcCCCEEEEEEEEECCC
Confidence            799999999999999999999998

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.17  E-value=3.3e-06  Score=60.53  Aligned_cols=68  Identities=16%  Similarity=0.181  Sum_probs=47.0

Q ss_pred             hhhccceeeEEeecCCCccEEEEecC--CCCcc---------cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDS--YPTHE---------AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~--~~~~~---------~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      ...+.++.+.|-+.+.| +.+.|||.  +....         .....+|+....   .....+|.|.+++.+|+|.|+|.
T Consensus       174 v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~v~~~DsG~Y~C~  249 (282)
T 1qok_A          174 ASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSG---SGTSYSLTISRMEAEDAATYYCQ  249 (282)
T ss_dssp             ECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEec---CCCEEEEEEccCChhHCEEEEEE
Confidence            44567788889999888 89999993  32210         001234554321   12467899999999999999999


Q ss_pred             EEE
Q psy534           77 VVF   79 (145)
Q Consensus        77 ~~~   79 (145)
                      +.+
T Consensus       250 a~~  252 (282)
T 1qok_A          250 QRS  252 (282)
T ss_dssp             ECS
T ss_pred             Eee
Confidence            963

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=98.17  E-value=1.6e-06  Score=51.90  Aligned_cols=25  Identities=20%  Similarity=0.290  Sum_probs=23.7

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus        58 ~~L~i~~~~~~D~G~Y~C~a~N~~G   82 (93)
T 1wit_A           58 TSIFFPSAKRADSGNYKLKVKNELG   82 (93)
T ss_dssp             EEEECTTBCGGGCEEEEEEEEETTE
T ss_pred             EEEEECCCChhcCEEEEEEEEcCCC
Confidence            4799999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	145
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	5e-05
d1ncna_	110	b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human	8e-05
d1dr9a1	105	b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (	4e-04
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	5e-04
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	0.001

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (88), Expect = 5e-05
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 25  IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV 77
           + +Y         +A EY+GR   + +    G  +L +  +R SD+G Y C  
Sbjct: 48  VHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFF 100

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 8e-05
 Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 5/71 (7%)

Query: 27  VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLNRSPNS 86
                         +Y GR S           +L L  ++  D+G Y+C +     +   
Sbjct: 43  EVYLGKEKFDSVHSKYMGRTSFDS-----DSWTLRLHNLQIKDKGLYQCIIHHKKPTGMI 97

Query: 87  HKNGTWFHLDV 97
             +     L V
Sbjct: 98  RIHQMNSELSV 108

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 4e-04
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 56  GMASLNLTKIRESDQGWYECKVVFLNRSPNSHKNGTWFHLDV 97
              S+ +  +R SD+G YEC V+   +     ++     L V
Sbjct: 63  NNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSV 104

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 5e-04
 Identities = 6/39 (15%), Positives = 12/39 (30%)

Query: 87  HKNGTWFHLDVHGVFNDGTELRISNIRSQDIGDYTCLAT 125
                            G  L + +++  D G+Y+C   
Sbjct: 42  VLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRA 80

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.9 bits (77), Expect = 0.001
 Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 4/86 (4%)

Query: 14 LSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDK-ESPFGMASLNLTKIRESDQGW 72
          L++ +F   +DI    W          + K +               L +  +   D G 
Sbjct: 15 LNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGT 74

Query: 73 YECKVVFLNRSPNSHKNGTWFHLDVH 98
          Y   V   N +   +K      L + 
Sbjct: 75 YNVTVYSTNGTRILNKA---LDLRIL 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	145
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.18
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.16
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.15
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.1
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.07
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.07
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.06
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.06
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.05
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.04
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.03
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.03
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.03
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.03
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.02
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.02
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.02
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.02
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.02
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.01
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.0
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.98
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.96
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.95
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.95
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.93
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.92
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.92
d2avga1	110	Cardiac myosin binding protein C, different domain	98.91
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.89
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.89
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.88
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.86
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.85
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.85
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.85
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.85
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.84
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.83
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.83
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.83
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.83
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.82
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.82
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	98.82
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.82
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.81
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.78
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.73
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.71
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.68
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.65
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.65
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.65
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.64
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.6
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.59
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.56
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.55
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.55
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.53
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.52
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.52
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.51
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.51
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.49
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.48
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.46
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.46
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.45
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.43
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.43
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.42
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.42
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.41
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.41
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.4
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.4
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.4
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.4
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	98.38
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.38
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.37
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.36
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.36
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	98.36
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.36
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.33
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.31
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.29
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.28
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.27
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.27
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.26
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.26
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.25
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.25
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.24
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	98.24
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.24
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.24
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.21
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.2
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.2
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.2
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.19
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.19
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.18
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.17
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	98.17
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.17
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.16
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.16
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	98.16
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.15
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.14
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	98.14
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.13
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.13
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.13
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.09
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.08
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.07
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.07
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.06
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.05
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.04
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.03
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.02
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.02
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.01
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.0
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	97.99
d1pd6a_	94	Cardiac myosin binding protein C, different domain	97.99
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.97
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.97
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.96
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	97.96
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	97.95
d2avga1	110	Cardiac myosin binding protein C, different domain	97.95
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.95
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.94
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.94
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.94
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	97.93
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.93
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.92
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.91
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	97.9
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.9
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.89
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.88
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.88
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.87
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.86
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.86
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.85
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.83
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.83
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.82
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	97.82
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	97.81
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.8
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.8
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.79
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.79
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.78
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.78
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	97.77
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.77
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	97.77
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.77
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.76
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.76
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.75
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.75
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.74
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.72
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.71
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.7
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	97.7
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.69
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.68
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.67
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	97.67
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.66
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.66
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.65
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.65
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.64
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.63
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.63
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.63
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.63
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.62
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.62
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.62
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.61
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.6
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.6
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.6
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.6
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.6
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.59
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.59
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.59
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.59
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.58
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.58
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.58
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.58
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.56
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.56
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.56
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.55
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.54
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.53
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.53
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.53
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.52
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.51
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.5
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.49
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.49
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.47
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.47
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.46
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.46
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.46
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.46
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.45
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.45
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.45
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.45
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.43
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.43
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.41
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	97.4
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.4
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.39
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.37
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.37
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.37
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.37
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.36
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.35
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.34
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.34
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	97.34
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.33
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.32
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.32
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.31
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.31
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.31
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.3
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	97.3
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.3
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.29
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.27
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.27
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.27
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.26
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.25
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.23
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	97.21
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.21
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.21
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.21
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.2
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.2
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.2
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.18
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.18
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.18
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.16
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.16
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.16
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	97.14
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.13
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.13
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.12
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.11
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.11
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.1
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.08
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.07
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.07
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.06
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.05
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.03
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.01
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.0
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	96.99
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	96.99
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	96.99
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	96.97
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.97
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	96.97
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.96
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	96.95
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	96.95
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	96.95
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	96.94
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	96.94
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	96.92
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	96.92
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	96.92
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	96.9
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	96.89
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.88
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	96.87
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	96.87
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	96.86
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	96.85
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.84
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	96.83
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	96.82
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	96.82
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	96.81
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	96.8
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	96.76
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	96.75
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	96.74
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	96.73
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.73
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	96.72
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	96.72
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.71
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	96.7
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	96.68
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	96.67
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	96.66
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.65
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	96.63
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	96.63
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	96.62
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	96.61
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	96.59
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.55
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	96.54
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	96.52
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	96.52
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.51
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.48
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	96.48
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	96.37
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.35
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	96.34
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.3
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	96.27
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	96.23
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	96.19
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	96.19
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.18
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	96.17
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	96.13
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	96.07
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.05
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	95.94
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	95.94
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	95.73
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	95.72
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	95.61
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	95.54
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	95.5
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	95.44
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	95.44
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	95.41
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	95.36
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	95.32
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	95.3
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	95.24
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	95.19
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	95.0
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	94.96
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	94.95
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	94.91
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	94.9
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	94.89
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	94.84
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.65
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	94.55
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	94.49
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	94.47
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	94.47
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.36
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	94.27
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	94.25
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	94.22
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	94.16
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	94.14
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	94.06
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	93.88
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	93.87
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	93.79
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	93.76
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	93.65
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	93.64
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	93.64
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	93.63
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	93.5
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	93.37
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	93.35
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	93.29
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	93.25
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	93.16
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	93.13
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	93.06
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	92.97
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	92.92
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	92.82
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	92.72
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	92.69
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	92.61
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	92.53
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	92.51
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	92.5
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	92.43
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	92.37
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	92.08
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	91.99
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	91.94
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	91.74
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	91.68
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	91.66
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	91.53
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	91.51
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	91.5
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	91.44
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	91.28
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	91.25
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	90.97
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	90.92
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	90.83
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	90.81
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	90.79
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	90.66
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	90.54
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	90.53
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	90.47
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	90.44
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	90.14
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	90.08
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	89.9
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	89.55
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	89.54
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	89.39
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	89.24
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	89.2
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	89.05
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	89.05
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	88.8
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	88.7
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	88.69
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	88.47
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	88.45
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	88.41
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	88.32
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	88.23
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	87.97
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	87.94
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	87.4
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	87.2
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	87.08
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	86.93
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	86.68
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	86.53
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	86.0
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	85.6
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	85.39
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	85.1
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	84.96
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	84.44
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	84.38
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	83.81
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	83.52
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	83.33
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	82.38
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	82.36
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	81.77
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	81.67
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	80.4

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.18  E-value=5.4e-12  Score=76.18  Aligned_cols=68  Identities=19%  Similarity=0.189  Sum_probs=50.2

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ....+..+.+.|-+.|.|.|.+.|++++...............     ....+|.|.+++.+|+|.|.|.+.+
T Consensus        16 ~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~N   83 (97)
T d3dara1          16 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR-----NQHWSLIMESVVPSDKGNYTCVVEN   83 (97)
T ss_dssp             EECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEE-----GGGTEEEECSCCGGGCEEEEEEEEE
T ss_pred             EECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEc-----CCcEEEEECCCCcccCEEEEEEEEE
Confidence            3456778889999999999999999998543222211112221     2367899999999999999999975

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=1.8e-11  Score=73.14  Aligned_cols=66  Identities=17%  Similarity=0.122  Sum_probs=51.0

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+..+.+.|.+.|.|.|.+.|++++.. +......+...      ..+++|.|.+++++|+|.|.|++.+.
T Consensus        13 v~~G~~~~l~C~v~g~p~p~v~W~~~~~~-i~~~~~~~~~~------~~~~~L~I~~~~~~D~G~Y~C~a~n~   78 (92)
T d1epfa2          13 FKEGEDAVIVCDVVSSLPPTIIWKHKGRD-VILKKDVRFIV------LSNNYLQIRGIKKTDEGTYRCEGRIL   78 (92)
T ss_dssp             CCTTSCEEECCEEECSSCCEEEEEETTEE-GGGGCCTTEEE------CTTSCEEETTCCGGGCEEEEEEEEEG
T ss_pred             EeCCCcEEEEEEEeecCCCeEEEEEcCcc-cccccceeeee------eeeeeEEECCCCHHhCEEEEEEEEEC
Confidence            45677888899999999999999999854 33333334443      23568999999999999999999764

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=2.3e-11  Score=73.64  Aligned_cols=70  Identities=17%  Similarity=0.143  Sum_probs=51.1

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ++.++.++.+.|-+.|.|.|.+.|++++...............    .....+|.|.+++.+|+|.|.|.+.+.
T Consensus        16 t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~N~   85 (100)
T d1qz1a3          16 TANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIF----SDDSSELTIRNVDKNDEAEYVCIAENK   85 (100)
T ss_dssp             ETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEE----CTTSCEEEECSCCGGGCEEEEEEEEET
T ss_pred             EEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEe----ecCceEEEeCCCCcccCEEEEEEEEEC
Confidence            4567889999999999999999999987542221111111121    134688999999999999999999763

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.10  E-value=2e-10  Score=68.46  Aligned_cols=67  Identities=12%  Similarity=-0.044  Sum_probs=50.5

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+-|-+.|.|.|.+.|++++.... ..-+.+....     ....+|.|.+++.+|+|.|.|.|.+.
T Consensus        14 v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~-~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~c~a~N~   80 (93)
T d1wiua_          14 IKAGFTHNLEVDFIGAPDPTATWTVGDSGAA-LAPELLVDAK-----SSTTSIFFPSAKRADSGNYKLKVKNE   80 (93)
T ss_dssp             ECSSBCCEEEEEEECCSSCEEEEECSSSSCB-CSTTSEEEEE-----TTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred             EeCCCeEEEEEEEEEecCCeEEEEeeeeece-eeeeeeeccc-----ccceeeccccccccccEEEEEEEEEC
Confidence            3567788899999999999999999986432 2212222221     34778999999999999999999763

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.07  E-value=1e-10  Score=69.55  Aligned_cols=61  Identities=20%  Similarity=0.294  Sum_probs=48.0

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|-+.|.|.|.+.|+|++.....     +  .     ...+++|.|.+++.+|+|.|.|.|.+.
T Consensus        17 ~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~-----~--~-----~~~~~~L~I~~v~~~D~G~Y~C~a~N~   77 (91)
T d1cs6a3          17 ALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS-----K--W-----LSSEPLLHIQNVDFEDEGTYECEAENI   77 (91)
T ss_dssp             EETTCCEEEECEEEEESCCEEEEEECCSCCSC-----C--C-----SBSSSEEEECSCCGGGCEEEEEEEEET
T ss_pred             EecCCcEEEEEEEEEccCCEEEEEecccccce-----E--e-----eeeeeEEEeCCCCccCCEEEEEEEEEC
Confidence            45677889999999999999999997643211     1  1     123778999999999999999999863

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.07  E-value=1.2e-10  Score=69.20  Aligned_cols=65  Identities=14%  Similarity=0.184  Sum_probs=49.9

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.++.+.|-+.|.|.|.+.|++++... ...-+.++..     .....+|.|.+++.+|+|.|.|.+.+
T Consensus        12 ~~G~~~~l~C~~~g~P~p~v~W~~~g~~l-~~~~~~~~~~-----~~~~~~L~i~~v~~~D~G~Y~C~a~N   76 (91)
T d1tnna_          12 YEGESARFSCDTDGEPVPTVTWLRKGQVL-STSARHQVTT-----TKYKSTFEISSVQASDEGNYSVVVEN   76 (91)
T ss_dssp             SSSSCCCEEEECCCSSCCCCEEESSSSTT-CSSSSCEEEE-----CSSEEEEECSSCCSCCCEEEEEECBC
T ss_pred             eCCCcEEEEEEEEEEeCCeEEEEEeeccc-ccccceeeee-----ecceeEEeecCCCHHHCEEEEEEEEE
Confidence            45678889999999999999999998543 2222223332     13478999999999999999999975

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.06  E-value=1e-10  Score=69.33  Aligned_cols=63  Identities=22%  Similarity=0.258  Sum_probs=49.8

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|-+.|.|.|.+.|++++.. +..  ..|+.+       .+.+|.|.+++.+|+|.|.|.+.+.
T Consensus        13 v~~G~~~~l~C~~~g~P~p~v~W~k~g~~-i~~--~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~   75 (89)
T d1cs6a4          13 ADIGSDLRWSCVASGKPRPAVRWLRDGQP-LAS--QNRIEV-------SGGELRFSKLVLEDSGMYQCVAENK   75 (89)
T ss_dssp             EETTCCEEEECEEEEESCCEEEEEETTEE-CCC--CSSEEE-------ETTEEEESSCCGGGCEEEEEEEEET
T ss_pred             ECCCCcEEEEEEEEEEcCCEEEEEEeecc-ccc--cceeee-------eeeeEEEEeecccCCEEEEEEEEeC
Confidence            34677888999999999999999999854 222  234444       2568999999999999999999863

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.06  E-value=2.2e-10  Score=68.89  Aligned_cols=67  Identities=12%  Similarity=0.020  Sum_probs=49.3

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.++.+.|-+.|.|.|.+.||+++... ...  .+......  ..+..+|.|.+++.+|+|.|.|.+.+.
T Consensus        17 ~~g~~v~l~c~v~g~P~p~v~W~k~~~~i-~~~--~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~c~a~N~   83 (98)
T d1g1ca_          17 GQGSDAHFRVRVVGKPDPECEWYKNGVKI-ERS--DRIYWYWP--EDNVCELVIRDVTGEDSASIMVKAINI   83 (98)
T ss_dssp             ETTSCEEEEEEEEEESCCEEEEEETTEEC-CCC--SSEEEEEE--ETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             cCCCcEEEEEEEEEecCCeEEEEeCceEE-eee--eeeEEEec--cceEEEEEeccCccccCEEEEEEEEEC
Confidence            45678889999999999999999998542 221  23222211  123568999999999999999999763

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=3.8e-10  Score=68.56  Aligned_cols=73  Identities=15%  Similarity=0.125  Sum_probs=50.9

Q ss_pred             HhhhccceeeEEeecCCC-ccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            7 VKSIFQMLSVGDFADDED-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +...+.++.+-|-+.|.| .|.+.|+|++..........+..... +.......|.|.+++.+|+|.|.|.|.+.
T Consensus        14 ~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~   87 (104)
T d2aw2a1          14 SILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKE-EKNISFFILHFEPVLPNDNGSYRCSANFQ   87 (104)
T ss_dssp             EEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEE-CSSCEEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             EEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEe-cCCceEEEEEEccccHHHCCeEEEEEEcC
Confidence            455788999999999998 58999999875432211111222211 12233567999999999999999999864

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.04  E-value=3.4e-10  Score=68.57  Aligned_cols=67  Identities=16%  Similarity=0.170  Sum_probs=50.0

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.++.+.|-+.|.|.|.+.|++++.. +...  .+..+..  ...+..+|.|.+++.+|+|.|.|.+.+.
T Consensus        21 ~~G~~~~l~C~~~g~P~p~v~W~k~~~~-i~~~--~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   87 (102)
T d1fhga_          21 VEGSAARFDCKVEGYPDPEVMWFKDDNP-VKES--RHFQIDY--DEEGNCSLTISEVCGDDDAKYTCKAVNS   87 (102)
T ss_dssp             ETTSCEEEEEEEEEESCCEEEEEETTEE-CCCS--SSEEEEE--CTTCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             ecCCcEEEEEEEEeccCCeEEEEeeecc-ccce--eeEeEEE--ecCceeeeEecCCCHHhCEEEEEEEEEC
Confidence            4577888899999999999999999854 2222  2233221  1234778999999999999999999863

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.4e-10  Score=68.79  Aligned_cols=64  Identities=13%  Similarity=0.219  Sum_probs=49.5

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +..+..+.+.|-+.|.|.|.+.|++++.....    +.....     ....+|.|.+++.+|+|.|.|.|.+.
T Consensus        13 ~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~----~~~~~~-----~~~~~L~I~~v~~~d~G~Y~C~a~N~   76 (90)
T d1vcaa2          13 AQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN----GKVTNE-----GTTSTLTMNPVSFGNEHSYLCTATCE   76 (90)
T ss_dssp             EETTSCEEEEEEEESCSSCEEEEEETTCCCCS----SEEEEE-----TTEEEEEESSCCGGGCSEEEEEEEET
T ss_pred             EECCCEEEEEEeccCCCCceEEEEecCcccee----eeeeee-----cCCcEEEEecccccccceEEEEEEeC
Confidence            35678889999999999999999987654221    122221     34788999999999999999999863

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.03  E-value=9.3e-11  Score=70.56  Aligned_cols=68  Identities=13%  Similarity=0.111  Sum_probs=50.5

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.++.+.|-+.|.|.|.+.|++++.. +......++....   .....+|.|.+++.+|+|.|.|.|.+
T Consensus        15 ~~~G~~v~l~C~~~g~P~~~v~W~k~g~~-i~~~~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N   82 (97)
T d1biha3          15 AKAGDVTMIYCMYGSNPMGYPNYFKNGKD-VNGNPEDRITRHN---RTSGKRLLFKTTLPEDEGVYTCEVDN   82 (97)
T ss_dssp             EETTSCEEEEEEEECSSCCCCEEEETTEE-CCCCTTSSEESCS---SSTTSEEEESSCCGGGCEEEEEEECC
T ss_pred             EecCCeEEEEEEEEEecCCEEEEEEeeee-ccccceeeeeeee---ecCCCEEEEEeccccccEEEEEEEEE
Confidence            45678889999999999999999999854 2222223332211   23357899999999999999999975

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=8.6e-10  Score=66.11  Aligned_cols=70  Identities=17%  Similarity=0.126  Sum_probs=50.1

Q ss_pred             hhhccceeeEEeecCCCc-cEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDI-PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~-p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|-+.|.|. |.+.|+++++..+.. ...|+.+...  .....+|.|.+++.+|+|.|+|.|.+.
T Consensus        12 v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~-~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~   82 (97)
T d1epfa1          12 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP-NQQRISVVWN--DDDSSTLTIYNANIDDAGIYKCVVTAE   82 (97)
T ss_dssp             EETTCCEEEEEEECCCSCCCEEEEECTTSCEECC-BSSSEEEEEE--ETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EccCCcEEEEEEEEeccCCCEEEEEEeeeeeeee-ccccEEEEee--cCcceEEEcccCchhhceEEEEEEEeC
Confidence            457888999999999874 799999965433222 1223333221  123678999999999999999999863

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=8.4e-10  Score=66.68  Aligned_cols=67  Identities=10%  Similarity=0.020  Sum_probs=50.6

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|-+.|.|.|.+.|++++... ...  .|+.+...   ....+|.|.+++.+|+|.|.|.+.+.
T Consensus        12 v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l-~~~--~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N~   78 (101)
T d2cqva1          12 VRAGESVELFGKVTGTQPITCTWMKFRKQI-QES--EHMKVENS---ENGSKLTILAARQEHCGCYTLLVENK   78 (101)
T ss_dssp             EETTCCEEEEEEEESSSSCEEEEEESSSBC-CCS--SSEEEEEC---SSEEEEEETTCCTTTCEEEEEEEECS
T ss_pred             EeCCCcEEEEEEEEecCCCEEEEEeCceee-ccC--CcEEEEEe---cceeEEEEeeCCcccCEEEEEEEEEC
Confidence            346778899999999999999999998643 222  33433221   33668999999999999999999753

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=6.8e-10  Score=64.95  Aligned_cols=56  Identities=16%  Similarity=0.121  Sum_probs=46.5

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      -.+.++.+.|-+.|.|.|.+.|++++....                ..+..|.|.+++.+|+|.|.|.|.+.
T Consensus        12 ~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~----------------~~~~~l~i~~v~~~DsG~Y~C~a~N~   67 (84)
T d2nxyb2          12 LQGQSLTLTLESPPGSSPSVQCRSPRGKNI----------------QGGKTLSVSQLELQDSGTWTCTVLQN   67 (84)
T ss_dssp             ETTCCEEEEEECCTTCCCEEEEECTTCCEE----------------EESSEEEESSCCGGGCEEEEEEEEET
T ss_pred             ECCCeEEEEEEeEcCCchheEEEeecccce----------------eeeeeeeeeecccccccEEEEEEEeC
Confidence            457788999999999999999999864311                12677999999999999999999763

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=2.4e-10  Score=69.13  Aligned_cols=65  Identities=14%  Similarity=0.185  Sum_probs=49.1

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCc---------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTH---------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~---------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.++.+.|.+.|.|.|.+.|++.+...         ....+..|..+       .+++|.|.+++.+|+|.|+|.+.+
T Consensus        14 ~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~tL~I~~v~~~D~G~Y~C~a~n   86 (102)
T d1f97a1          14 PENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF-------SSSGITFSSVTRKDNGEYTCMVSE   86 (102)
T ss_dssp             ETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE-------ETTEEEESCCCGGGCEEEEEEEEE
T ss_pred             eCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEe-------cCCEEEEeECCccCCEEEEEEEEE
Confidence            45778899999999999999999875431         11223334433       267899999999999999999975


Q ss_pred             e
Q psy534           80 L   80 (145)
Q Consensus        80 ~   80 (145)
                      .
T Consensus        87 ~   87 (102)
T d1f97a1          87 E   87 (102)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.02  E-value=1.9e-10  Score=70.21  Aligned_cols=67  Identities=16%  Similarity=0.016  Sum_probs=50.0

Q ss_pred             hhhccceeeEEee-cCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFA-DDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~-~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|-. .|.|.|.+.|+|++.... .....|....     ..+++|.|.+++.+|+|.|+|.+.+.
T Consensus        16 v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~-~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~N~   83 (105)
T d1cs6a2          16 ITEGWGVMFTCSPPPHYPALSYRWLLNEFPNF-IPADGRRFVS-----QTTGNLYIAKTEASDLGNYSCFATSH   83 (105)
T ss_dssp             EETTSCEEECCCCCSEESCCEEEEEESSTTCB-CCCCSSEEEC-----TTTCCEEESSCCGGGCEEEEEEEEEE
T ss_pred             EeCCCeEEEEEEccCCCCCCEEEEEEeecccc-ccccceeeee-----cCCCEEeecccccccCcEEEEEEEEC
Confidence            4557788888887 488999999999975432 2223344332     34778999999999999999999764

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.02  E-value=1.5e-10  Score=68.62  Aligned_cols=60  Identities=17%  Similarity=0.321  Sum_probs=48.2

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.++.+.|-+.|.|.|.+.|++++... .   .+|..+.       +.+|.|.+++.+|+|.|.|.+.+
T Consensus        16 ~~G~~~~l~C~~~g~P~p~v~W~~~~~~i-~---~~~~~~~-------~~~L~i~~v~~~d~G~Y~C~a~N   75 (89)
T d1biha4          16 KQGQDVTIPCKVTGLPAPNVVWSHNAKPL-S---GGRATVT-------DSGLVIKGVKNGDKGYYGCRATN   75 (89)
T ss_dssp             CTTSCEEEECEEEEESCCCCEEEETTEEC-C---SSSEEEE-------TTEEEESSCCSTTCEEEEEEEEE
T ss_pred             eCCCeEEEEEEEEEeCCCEEEEEeCCccC-c---cccEEEe-------eeeEEECCCChhhCEEEEEEEEE
Confidence            45778888999999999999999988542 2   2344442       45799999999999999999986

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.3e-10  Score=67.85  Aligned_cols=68  Identities=19%  Similarity=0.158  Sum_probs=49.4

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.++.+.|.+.|.|.|.+.|++++... ...-..+.....   ......|.|.+++++|+|.|+|.|.+
T Consensus         8 v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l-~~~~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N   75 (91)
T d1rhfa1           8 VSQGQPVKLNCSVEGMEEPDIQWVKDGAVV-QNLDQLYIPVSE---QHWIGFLSLKSVERSDAGRYWCQVED   75 (91)
T ss_dssp             EETTCCEEEEEEEESCSSCCEEEEETTEEC-CSSEEEEEEEET---TEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred             EcCCCeEEEEEEEEecCCceEEEEEeeccc-ccceeeeeeecc---cCceeeEEECCCCcccCEEEEEEEEE
Confidence            345778999999999999999999998542 222111222211   13357899999999999999999975

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.01  E-value=2.8e-10  Score=67.83  Aligned_cols=65  Identities=17%  Similarity=0.152  Sum_probs=48.1

Q ss_pred             hhccceeeEEeecCCCcc-EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIP-VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p-~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.++.+.|-+.|.|.| .+.|++++........  +....     ..+++|.|.+++.+|+|.|+|.|.+.
T Consensus        15 ~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~--~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~   80 (94)
T d1biha1          15 RENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH--NAALR-----KDEGSLVFLRPQASDEGHYQCFAETP   80 (94)
T ss_dssp             ETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTT--TEEEC-----TTSCCEEESSCCGGGCEEEEEEEEET
T ss_pred             eCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecc--eeeec-----ccceEEEEeccChhcCeEEEEEEEeC
Confidence            456788888999999866 6999999865322222  22221     23678999999999999999999864

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.00  E-value=2.9e-10  Score=68.23  Aligned_cols=67  Identities=12%  Similarity=0.030  Sum_probs=50.2

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|-+.|.|.|.+.|++++.. +..  ..|..+..   .....+|.|.+++.+|+|.|.|.|.+.
T Consensus        13 v~~G~~~~l~C~~~g~P~p~v~W~~~~~~-l~~--~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N~   79 (97)
T d1koaa1          13 VGEGQSANFYCRVIASSPPVVTWHKDDRE-LKQ--SVKYMKRY---NGNDYGLTINRVKGDDKGEYTVRAKNS   79 (97)
T ss_dssp             EETTSCEEEEEEEECSSCCEEEEEETTEE-CCS--BTTBBCCC---STTEEEEEESCCCSGGGSCEEEEEEET
T ss_pred             EeCCCcEEEEEEEEEcCCCEEEEEEeeec-cce--eeEEEEEe---cCCeeEEEeCCCceecCEEEEEEEEEC
Confidence            34577888999999999999999999854 222  22333221   134678999999999999999999763

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=3e-10  Score=68.89  Aligned_cols=66  Identities=14%  Similarity=0.130  Sum_probs=49.1

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccc---------cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAE---------EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~---------~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+.++.+.|.+.|.|.|.+.|++++......         .+.+|..+       .+++|.|.+++.+|+|.|.|.+.
T Consensus        16 v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~   88 (105)
T d1nbqa1          16 IPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF-------LPTGITFKSVTREDTGTYTCMVS   88 (105)
T ss_dssp             EETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEE-------ETTEEECSCCCTTSCSEEEEEEE
T ss_pred             EeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeee-------cCceEEEecccccceeeEEEEEE
Confidence            456788999999999999999999876432211         12222222       25689999999999999999998


Q ss_pred             Ee
Q psy534           79 FL   80 (145)
Q Consensus        79 ~~   80 (145)
                      +.
T Consensus        89 n~   90 (105)
T d1nbqa1          89 EE   90 (105)
T ss_dssp             ET
T ss_pred             EC
Confidence            64

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.5e-09  Score=63.38  Aligned_cols=60  Identities=10%  Similarity=0.006  Sum_probs=46.7

Q ss_pred             hhccceeeEEeec-CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFAD-DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.++.+.|-+. |.|.|.+.|++.+....     . ....     ...+.|.|.+++.+|+|.|.|.|.+
T Consensus        16 ~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~-----~-~~~~-----~~~~~L~i~~v~~~D~G~Y~C~Asn   76 (90)
T d1gsma1          16 ALGASRQLTCRLACADRGASVQWRGLDTSLG-----A-VQSD-----TGRSVLTVRNASLSAAGTRVCVGSC   76 (90)
T ss_dssp             ETTCCEEEEEEECCSSTTCEEEEESSTTTTC-----C-EEEE-----SSEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EeCCcEEEEEEecCCCCccEEEEEEeeeeee-----e-eecc-----CceeeEEcCccChhhCCcEEEEEEe
Confidence            4677888999876 88999999998775421     1 1111     3478899999999999999999975

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1e-09  Score=66.63  Aligned_cols=68  Identities=10%  Similarity=-0.029  Sum_probs=45.7

Q ss_pred             cceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ....+.|-+.|.|.|.+.|++++... ...-..++.............|.|.+++.+|+|.|+|.|.+.
T Consensus        17 ~~~~i~~~v~G~P~P~i~W~~~g~~l-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   84 (103)
T d1wwbx_          17 HHWCIPFTVKGNPKPALQWFYNGAIL-NESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNE   84 (103)
T ss_dssp             CEEEEEEEEECSSCCEEEEEETTEEE-CCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECS
T ss_pred             eeEEEEEEEEEeCCCEEEEEECCEEe-eeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEecc
Confidence            34456677789999999999998543 222111222211111223567999999999999999999763

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=8.4e-10  Score=64.99  Aligned_cols=62  Identities=15%  Similarity=0.083  Sum_probs=47.7

Q ss_pred             hhhccceeeEEeec-CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFAD-DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|.+. |.|.|.+.|+|++.....    ++...       .+++|.|.+++.+|+|.|.|.|.+.
T Consensus        14 v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~----~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~N~   76 (89)
T d1gl4b_          14 VRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP----SRAMD-------FNGILTIRNVQPSDAGTYVCTGSNM   76 (89)
T ss_dssp             ECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCC----TTEEE-------ETTEEEECSCCGGGCEEEEEEEECS
T ss_pred             EeCCCcEEEEEEccCCCCCCEEEEecCCceeec----cccEe-------eceEEEEecCCcccCEEEEEEEEEC
Confidence            34577889999997 788999999998754221    22222       2678999999999999999999753

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1e-09  Score=67.54  Aligned_cols=74  Identities=15%  Similarity=0.237  Sum_probs=49.7

Q ss_pred             HhhhccceeeEEeecCCC---ccEEEEecCCCCcccccccceEEEec---CCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            7 VKSIFQMLSVGDFADDED---IPVYIWYDSYPTHEAEEYKGRISRVD---KESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p---~p~~~w~k~~~~~~~~~~~~R~~~~~---~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +...+.++.+.|-+.|.|   .|.+.|+|++.......-..+..+..   ........+|.|.+++.+|+|.|+|.|.+.
T Consensus        11 ~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   90 (113)
T d2dava1          11 TVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYK   90 (113)
T ss_dssp             EEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECS
T ss_pred             EEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEEEeC
Confidence            345678899999999988   68999999864322111111222111   111223567999999999999999999753

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.6e-09  Score=65.80  Aligned_cols=64  Identities=13%  Similarity=0.082  Sum_probs=43.9

Q ss_pred             eeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           15 SVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        15 ~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+.|-+.|.|.|.+.|++++.. +...-..+.... .+.......|.|.+++.+|+|.|+|.|.|.
T Consensus        21 ~i~~~v~G~P~P~v~W~~n~~~-i~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   84 (105)
T d1wwca_          21 CIEFVVRGNPPPTLHWLHNGQP-LRESKIIHVEYY-QEGEISEGCLLFNKPTHYNNGNYTLIAKNP   84 (105)
T ss_dssp             EEEEEEECSSCCEEEEEETTEE-CCCSSSEEEEEE-ECSSEEEEEEEEESCCGGGCEEEEEEEEET
T ss_pred             EEEEEEEEeCCCeEEEEeCccc-cCCCcceeeeEE-eecccceEEEEEeecccccceEEEEEEEcC
Confidence            3556678999999999999854 222211222221 112233677999999999999999999764

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=4.6e-10  Score=66.96  Aligned_cols=63  Identities=16%  Similarity=0.173  Sum_probs=46.5

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+..+.+-|-++| |.|.+.|++++..... . ..+..+      ..+++|.|.+++++|+|.|.|.|.+.
T Consensus        10 ~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~-~-~~~~~~------~~~~~L~I~~v~~~DsG~Y~C~A~n~   72 (92)
T d1olza1          10 KHGGTAELKCSQKS-NLARVFWKFQNGVLKA-E-SPKYGL------MGRKNLLIFNLSEGDSGVYQCLSEER   72 (92)
T ss_dssp             ETTSCEEECCCCSC-TTCEEEEEESSSBCCC-C-SSSBCC------TTTTCEEECSCCGGGCEEEEEEEEEE
T ss_pred             eCCCEEEEEEEeec-cCCceeeecCccccee-e-eeeeec------ceeeEEEECCCCHHHCcEEEEEEEEc
Confidence            45677788898888 5678899988755322 1 223333      23678999999999999999999864

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.7e-09  Score=65.24  Aligned_cols=73  Identities=15%  Similarity=0.215  Sum_probs=49.7

Q ss_pred             hhhccceeeEEeecCCC---ccEEEEecCCCCcccccccceEEEec---CCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDED---IPVYIWYDSYPTHEAEEYKGRISRVD---KESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p---~p~~~w~k~~~~~~~~~~~~R~~~~~---~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+..+.+.|-+.|.|   .|.+.|++++...+...-..++....   .......++|.|.+++.+|+|.|.|.+.+.
T Consensus        16 v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   94 (110)
T d2avga1          16 VTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTK   94 (110)
T ss_dssp             EETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEEEEET
T ss_pred             EECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEEEEEC
Confidence            34577888999999988   68899999874332222222222211   111223577999999999999999999763

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=3.2e-09  Score=64.95  Aligned_cols=64  Identities=17%  Similarity=0.180  Sum_probs=44.8

Q ss_pred             hccceeeEEeecCCCccEEEEecCCC----------------CcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEE
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYP----------------THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWY   73 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~----------------~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   73 (145)
                      .+..+.+.|.........+.|+|+..                ....+.|++|+.+.      .+++|.|.+++.+|+|.|
T Consensus        13 ~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~------~ngSL~I~~v~~~D~G~Y   86 (107)
T d1l6za1          13 EDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY------SNGSLLFQMITMKDMGVY   86 (107)
T ss_dssp             TTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEEC------TTSCEEECSCCGGGCEEE
T ss_pred             CCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEc------ccccEEEcCCCchhCEEE
Confidence            44556666654333345667766432                11235688999984      488999999999999999


Q ss_pred             EEEEEE
Q psy534           74 ECKVVF   79 (145)
Q Consensus        74 ~C~~~~   79 (145)
                      .|++..
T Consensus        87 ~c~v~~   92 (107)
T d1l6za1          87 TLDMTD   92 (107)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999964

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.8e-09  Score=67.34  Aligned_cols=69  Identities=16%  Similarity=0.192  Sum_probs=48.4

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCccc--------------------------ccccceEEEecCCCCCCeeeEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEA--------------------------EEYKGRISRVDKESPFGMASLN   61 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~--------------------------~~~~~R~~~~~~~~~~~~~sL~   61 (145)
                      ...+.++.+-|.+.|.|.|.+.|++++.....                          .....|+++..   .....+|.
T Consensus        21 v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~L~   97 (130)
T d1gxea_          21 VVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVET---TKDRSIFT   97 (130)
T ss_dssp             ESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEE---ETTEEEEE
T ss_pred             EEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEE---CCCEEEEE
Confidence            44577888899999999999999986532100                          00112233211   12357899


Q ss_pred             EcccCCCCCEEEEEEEEE
Q psy534           62 LTKIRESDQGWYECKVVF   79 (145)
Q Consensus        62 I~~v~~~D~G~Y~C~~~~   79 (145)
                      |.+++.+|+|.|.|.|.|
T Consensus        98 I~~v~~~D~G~Y~C~a~N  115 (130)
T d1gxea_          98 VEGAEKEDEGVYTVTVKN  115 (130)
T ss_dssp             CSCCCTTTCEEEEEEEEC
T ss_pred             ECcCChhcCEEEEEEEEE
Confidence            999999999999999985

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.88  E-value=4.6e-10  Score=67.33  Aligned_cols=63  Identities=13%  Similarity=0.102  Sum_probs=47.3

Q ss_pred             ccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           11 FQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        11 ~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..++.+.|.+.|.|.|.+.|++++.. +......+...      .....|.|..++.+|+|.|.|.|.+.
T Consensus        22 ~~~v~l~C~~~g~P~p~v~W~~ng~~-i~~~~~~~~~~------~~~~~l~i~~~~~~d~G~Y~C~a~N~   84 (97)
T d1cs6a1          22 EEKVTLTCRARANPPATYRWKMNGTE-LKMGPDSRYRL------VAGDLVISNPVKAKDAGSYQCVATNA   84 (97)
T ss_dssp             CCEEEECCEEEEESCCEEEEEETTEE-CCCSTTSSEEE------ETTEEEEESCCHHHHCEEEEEEEEET
T ss_pred             CCeEEEEEEEEEeCCCEEEEEEeeee-ccCCCCceEEe------eeeeEEEEecccccCCEEEEEEEEEC
Confidence            45778889999999999999999854 32222333333      12567889999999999999999864

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.5e-09  Score=64.88  Aligned_cols=68  Identities=13%  Similarity=-0.006  Sum_probs=44.0

Q ss_pred             hhhccceeeEEeecCCCccEEEEec--CCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYD--SYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k--~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+-|.+.|.|.|.+.|++  .+.......  .+..+..   ....++|.|.+++++|+|.|+|.+.+.
T Consensus        13 v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~a~N~   82 (96)
T d2c9aa1          13 VNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLK--EIKVTSS---RRFIASFNVVNTTKRDAGKYRCMIRTE   82 (96)
T ss_dssp             ECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEE--EEEEEET---TEEEEEEEECSCCGGGCSEEEEEEEET
T ss_pred             EeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCC--ceeEEEe---ecCceEEEECCCCHHHCeEEEEEEEeC
Confidence            3467788999999999877554432  222212111  1111211   123578999999999999999999763

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.85  E-value=1.1e-09  Score=66.74  Aligned_cols=73  Identities=10%  Similarity=0.053  Sum_probs=47.4

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCCc---ccccccceEEEe----cCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTH---EAEEYKGRISRV----DKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~---~~~~~~~R~~~~----~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ++..+.++.+.|-+.|.|.|.+.|++++...   ....-..+....    ..........|.|.+++.+|+|.|.|.|.+
T Consensus        16 tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   95 (109)
T d2fdbp2          16 STVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGN   95 (109)
T ss_dssp             EECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEEEEEEE
Confidence            4567788999999999999999999875321   000000000100    001123367899999999999999999975

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=1.8e-09  Score=64.55  Aligned_cols=64  Identities=14%  Similarity=0.241  Sum_probs=47.5

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+..+.+.|.+.+. .+.+.|++++.. +.  ...+..+..     ...+|.|.+++++|+|.|.|+|.+.
T Consensus        15 v~~g~~v~l~C~~~~~-~~~v~W~~~~~~-l~--~~~~~~~~~-----~~~~L~I~~v~~~d~G~Y~C~a~N~   78 (96)
T d1l6za2          15 VKELDSVTLTCLSNDI-GANIQWLFNSQS-LQ--LTERMTLSQ-----NNSILRIDPIKREDAGEYQCEISNP   78 (96)
T ss_dssp             ECTTSCEEEEECCCCS-SCEEEEEETTEE-CC--CCTTEEEET-----TTTEEEECSCCGGGCEEEEEEEESS
T ss_pred             EeCCCeEEEEEccCCC-CCCEEEEEeeee-cc--cccceeccC-----CceEEEEeccchhhceEEEEEEEeC
Confidence            3567888999988764 578999999753 22  223444432     3678999999999999999999853

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.4e-09  Score=66.22  Aligned_cols=61  Identities=15%  Similarity=0.250  Sum_probs=43.5

Q ss_pred             ccceeeEE------eecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           11 FQMLSVGD------FADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        11 ~~~~~~~~------w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +....+.|      -..|+|.|.+.|++++.. +... ..+...       .+.+|.|.+++.+|+|.|+|.|.+.
T Consensus        14 g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~-l~~~-~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~n~   80 (103)
T d1iray2          14 AGDGGLVCPYMEFFKNENNELPKLQWYKDCKP-LLLD-NIHFSG-------VKDRLIVMNVAEKHRGNYTCHASYT   80 (103)
T ss_dssp             SSCEEEECTTGGGGCBTTTBCCCCEEEETTEE-CCCC-SSSEEE-------ETTEEEESSCCGGGCEEEEEEEEEE
T ss_pred             CCCEEEEcCCccccccCCCCCCEEEEEECCcc-ccCC-CcEEEe-------cCCEEEEcccccccCcEEEEEEEEC
Confidence            34556777      335899999999998854 2221 122222       2568999999999999999999753

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=8.5e-09  Score=61.85  Aligned_cols=70  Identities=14%  Similarity=0.177  Sum_probs=49.9

Q ss_pred             hhhccceeeEEeecCCCcc-EEEEecCCCCc---ccccccceEEEecCCCCCCeeeEEEcccC-CCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIP-VYIWYDSYPTH---EAEEYKGRISRVDKESPFGMASLNLTKIR-ESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p-~~~w~k~~~~~---~~~~~~~R~~~~~~~~~~~~~sL~I~~v~-~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|.+.|.|.| .+.||++....   .......|+.+...   .....|.|.++. .+|+|.|.|.|.+.
T Consensus        14 v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~~D~G~Y~C~A~N~   88 (101)
T d3b5ha1          14 INEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS---QGRSELHIENLNMEADPGQYRCNGTSS   88 (101)
T ss_dssp             ECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEE---TTEEEEEECSCCTTTSSEEEEEEEEET
T ss_pred             ECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeC---CCEEEEEEeccccccCCEEEEEEEEEC
Confidence            4578889999999999877 79999875321   11223344444321   336789999998 57999999999863

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.84  E-value=4.2e-09  Score=62.20  Aligned_cols=59  Identities=8%  Similarity=0.054  Sum_probs=45.5

Q ss_pred             hhhccceeeEEeec-CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFAD-DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|... +.|.+.+.|||++...         ...     ..+..|.|.+++.+|+|.|.|++.+.
T Consensus        14 v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~---------~~~-----~~~~~l~I~~v~~~dsG~Y~C~a~n~   73 (89)
T d1fnla2          14 FKEEDPIHLRCHSWKNTALHKVTYLQNGKDR---------KYF-----HHNSDFHIPKATLKDSGSYFCRGLVG   73 (89)
T ss_dssp             EETTCCEEEEEEECTTCCCEEEEEEETTEEE---------EEE-----EECCCEEESSCCGGGCEEEEEEEEET
T ss_pred             EccCCeEEEEEEecCCCCCcEEEEEEccccc---------cee-----ccccccEECccceeccceEEEEEEeC
Confidence            34678899999987 6677889999987431         111     12568999999999999999999763

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=2e-09  Score=64.21  Aligned_cols=61  Identities=13%  Similarity=0.031  Sum_probs=44.9

Q ss_pred             hhccceeeEEeecCCCc-cEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDI-PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~-p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+..+.+.|-+.|.|. +.+.|+|++.... .  ..|...      ..+.+|.|.+++.+|+|.|+|.+.
T Consensus        19 ~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~-~--~~~~~~------~~~~~L~I~~v~~~D~G~Y~C~a~   80 (93)
T d1n26a1          19 LPGDSVTLTCPGVEPEDNATVHWVLRKPAAG-S--HPSRWA------GMGRRLLLRSVQLHDSGNYSCYRA   80 (93)
T ss_dssp             CTTCCEEEECTTSCTTCCSEEEEEEECSSSS-C--CCEEEE------EESSEEEECSCCGGGCEEEEEESS
T ss_pred             eCCCcEEEEEEeecCCCCceEEEEEcccccc-c--eeeEEe------cCCCEEEECCCChhcCEEEEEEEC
Confidence            34677888898888764 5899999976432 1  223322      126789999999999999999874

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1e-08  Score=62.48  Aligned_cols=62  Identities=13%  Similarity=0.046  Sum_probs=42.5

Q ss_pred             EeecCCCccEEEEecCCCCcccccccceEEEecC--CCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           18 DFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDK--ESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        18 ~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~--~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      |-++|.|.|.+.|++++.. +......+......  +.......|.|.+++.+|+|.|.|.|.|.
T Consensus        22 ~~v~G~P~P~v~W~~ng~~-l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~   85 (107)
T d1he7a_          22 FSVDGQPAPSLRWLFNGSV-LNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP   85 (107)
T ss_dssp             EEECCSSCCEEEEEETTEE-CCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEET
T ss_pred             EEEEEecCCeEEEEEeeeE-ccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeC
Confidence            4678999999999999854 22222222222221  11223567999999999999999999764

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=9.5e-10  Score=66.01  Aligned_cols=71  Identities=14%  Similarity=0.154  Sum_probs=49.2

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCC-----------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPT-----------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~-----------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      +..+..+.+-|.+.......+.|++....           .....+.+|+.+..+....++.+|.|++++.+|+|.|+|.
T Consensus         6 ~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~   85 (97)
T d2nxyb1           6 GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICE   85 (97)
T ss_dssp             EETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEE
T ss_pred             EEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEEEE
Confidence            44566677777666555566778765431           1223467787765443445678999999999999999998


Q ss_pred             EE
Q psy534           77 VV   78 (145)
Q Consensus        77 ~~   78 (145)
                      +.
T Consensus        86 v~   87 (97)
T d2nxyb1          86 VE   87 (97)
T ss_dssp             ET
T ss_pred             Ee
Confidence            84

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=5.2e-10  Score=66.48  Aligned_cols=66  Identities=8%  Similarity=-0.037  Sum_probs=50.3

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCE-EEEEEEEEe
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQG-WYECKVVFL   80 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G-~Y~C~~~~~   80 (145)
                      ....+.++.+.|-+.|.|.|.+.|++++..... .. .+.      ......+|.|.+++.+|.| .|.|.|.|.
T Consensus        13 ~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~-~~-~~~------~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~   79 (92)
T d2ifga1          13 SVDVGDDVLLRCQVEGRGLEQAGWILTELEQSA-TV-MKS------GGLPSLGLTLANVTSDLNRKNVTCWAEND   79 (92)
T ss_dssp             CCBTTCCEEEEEEEECSSCCCCCEEESCCCSSE-EE-CCC------CCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred             EEeCCCEEEEeeeccCCCCcEEEEEECCceeee-ee-eee------eeccceeEEEccccccccceEEEEEEEcC
Confidence            346788999999999999999999999754221 11 111      1245788999999999999 699999864

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=6.6e-09  Score=61.84  Aligned_cols=64  Identities=11%  Similarity=0.063  Sum_probs=45.8

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+.++.+.|-. +.|.|.+.||+++.......  .+..+...   .+..+|.|.+++.+|+|.|.|.|.
T Consensus        19 ~~G~~v~l~c~v-~~p~~~v~W~k~g~~i~~~~--~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~c~a~   82 (94)
T d1pd6a_          19 SKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSG--SKYIFESI---GAKRTLTISQCSLADDAAYQCVVG   82 (94)
T ss_dssp             ETTSCEEEEEEC-SSSSSCCEEEESSSEECCCS--SSSEEEEE---TTEEEEEECSCSSSSCEEEEEEET
T ss_pred             CcCCeEEEEEEE-CCCCceEEEEEcCccceeee--eeEeeecc---CCeEEeecCCCCceecEEEEEEEe
Confidence            467778888876 55888999999986532222  12222211   346789999999999999999984

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.8e-09  Score=63.88  Aligned_cols=66  Identities=12%  Similarity=-0.015  Sum_probs=47.0

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+..+.+.|-. +.|.|.+.||+++.... .....++.+..+   .+..+|.|.+++.+|+|.|.|++.
T Consensus        12 v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~-~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~   77 (90)
T d1x44a1          12 AYCGERVELECEV-SEDDANVKWFKNGEEII-PGPKSRYRIRVE---GKKHILIIEGATKADAAEYSVMTT   77 (90)
T ss_dssp             EETTEEEEEEEEC-SSSSCCCEEEETTEECC-CSTTCSEEEEEE---TTEEEEEEEEECTTTCSEEEEEET
T ss_pred             EeCCCcEEEEEEE-CCCCceEEEEEeecccC-CCCCccEEEEEe---CCccEEEECccccccCEEEEEEEe
Confidence            3466778888877 56888899999985432 222233433221   246789999999999999999985

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=5.2e-09  Score=61.27  Aligned_cols=57  Identities=11%  Similarity=0.102  Sum_probs=42.6

Q ss_pred             hhccceeeEEeecCCCcc-EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDEDIP-VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p-~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.++.+.|.+.|.|.| .+.|||++.. +..              .....+.|.....+|+|.|+|.|.+.
T Consensus        14 ~~G~~~~l~C~~~g~P~P~~i~W~k~g~~-i~~--------------~~~~~~~l~~~~~~d~G~Y~C~A~N~   71 (85)
T d1rhfa2          14 PPNAPFQLSCEAVGPPEPVTIVWWRGTTK-IGG--------------PAPSPSVLNVTGVTQSTMFSCEAHNL   71 (85)
T ss_dssp             CTTCCEEEEEEEECSSSCCEEEEEETTEE-CSC--------------SEESSEEEEECCCSSCEEEEEEEEET
T ss_pred             cCCCEEEEEEEEecCCcceEEEEEECCEE-CCC--------------CCCcceEEecCCccccEEEEEEEEcC
Confidence            457788999999999998 8999999843 211              11334556666778999999999864

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.4e-09  Score=65.92  Aligned_cols=64  Identities=20%  Similarity=0.237  Sum_probs=46.8

Q ss_pred             hhccceeeEEeec-CCCccEEEEecCCCCcc-cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFAD-DEDIPVYIWYDSYPTHE-AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~-g~p~p~~~w~k~~~~~~-~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      +.+..+.+-|.+. +.|.+.++||+++.... ......|+..       .+.+|.|.+++.+|+|.|.|.+.+
T Consensus        15 ~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N   80 (101)
T d1iray1          15 SANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ-------HKEKLWFVPAKVEDSGHYYCVVRN   80 (101)
T ss_dssp             ETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEE-------ETTEEEETTCCGGGCEEEEEEEEE
T ss_pred             eCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEec-------cCCEEEeccceecCCEEEEEEEEC
Confidence            3455667778776 78999999999875322 2223334432       267899999999999999999975

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.81  E-value=7.4e-09  Score=60.95  Aligned_cols=59  Identities=8%  Similarity=0.057  Sum_probs=45.9

Q ss_pred             hhhccceeeEEeec-CCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFAD-DEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|-+. +.|.+.+.|||++...         ...     ..+..|.|.+++.+|+|.|.|++.+.
T Consensus        12 v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~---------~~~-----~~~~~l~i~~v~~~dsG~Y~C~a~n~   71 (88)
T d2fcba2          12 FQEGETIVLRCHSWKDKPLVKVTFFQNGKSK---------KFS-----RSDPNFSIPQANHSHSGDYHCTGNIG   71 (88)
T ss_dssp             ECTTCCEEEEEEEGGGCCCEEEEEEETTEEE---------EEE-----SSCCEEEETTCCGGGCEEEEEEEEET
T ss_pred             EecCCeEEEEEEecCCCCCcEEEEEeecccc---------ccc-----ccccccccCccCHHHCCeEEEEEEeC
Confidence            34678899999886 5677889999987431         111     23678999999999999999999864

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.2e-09  Score=64.86  Aligned_cols=72  Identities=14%  Similarity=0.090  Sum_probs=48.6

Q ss_pred             hhccceeeEEeec-CCCccEEEEecCCCCcccccccceEEEe-cCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFAD-DEDIPVYIWYDSYPTHEAEEYKGRISRV-DKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~~~~~R~~~~-~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+..+.+.|-+. |.|.|.+.|++++..........+.... ........+.|.|.+++.+|+|.|.|.|.|.
T Consensus        15 ~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~   88 (104)
T d1nbqa2          15 TIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNG   88 (104)
T ss_dssp             ETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECS
T ss_pred             ecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEEC
Confidence            4577888889885 8999999999998643221111110000 0011233678999999999999999999864

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=1.4e-08  Score=61.76  Aligned_cols=68  Identities=12%  Similarity=0.093  Sum_probs=47.8

Q ss_pred             hhhccceeeEEeec-CCCccEEEEecCCCCccccc-c------cceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFAD-DEDIPVYIWYDSYPTHEAEE-Y------KGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~-g~p~p~~~w~k~~~~~~~~~-~------~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.++.+.|-+. |.|.+.+.|++++....... .      ..+...     ....+.|.|.+++.+|+|.|.|.|.+
T Consensus        14 v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~I~~v~~~D~G~Y~C~a~N   88 (110)
T d1f97a2          14 VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI-----DPKSGDLIFDPVTAFDSGEYYCQAQN   88 (110)
T ss_dssp             EETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEE-----CTTTCCEEESSCCGGGCEEEEEEEEC
T ss_pred             EecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEE-----eecccceEECCCCccCCEEEEEEEEE
Confidence            35677889999876 89999999999874321111 0      011111     13367899999999999999999986


Q ss_pred             e
Q psy534           80 L   80 (145)
Q Consensus        80 ~   80 (145)
                      .
T Consensus        89 ~   89 (110)
T d1f97a2          89 G   89 (110)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=5.1e-09  Score=62.01  Aligned_cols=62  Identities=15%  Similarity=0.194  Sum_probs=41.3

Q ss_pred             ccceeeEEeecCCCccEEEEecCCCC---------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           11 FQMLSVGDFADDEDIPVYIWYDSYPT---------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        11 ~~~~~~~~w~~g~p~p~~~w~k~~~~---------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      +.++.+-|- -+.|.+.+.|++++..         .....+++|..+.     ..+++|.|++++++|+|.|.|++.
T Consensus        10 G~sVtl~c~-~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~sL~I~~l~~~DsG~Y~c~~~   80 (93)
T d1ccza1          10 YGNVTFHVP-SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLD-----TVSGSLTIYNLTSSDEDEYEMESP   80 (93)
T ss_dssp             TCCEEECCC-CSSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEEC-----TTTCCEEECSCCGGGCEEEEEECT
T ss_pred             CCCEEEEec-CCCCCcEEEEEEeccccceeeecceeeCCCccceEEEc-----CCeeEEEEEecChhhCEEEEEEEE
Confidence            444555553 2446666677665532         2234566676652     347899999999999999999874

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2e-08  Score=59.20  Aligned_cols=58  Identities=17%  Similarity=0.081  Sum_probs=44.8

Q ss_pred             hhccceeeEEeecC-CCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.++.+.|.+.+ .|...+.|||++... ..             ......|.|.+++.+|+|.|.|++.+.
T Consensus        13 ~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~-~~-------------~~~~~~l~i~~~~~~dsG~Y~C~a~n~   71 (89)
T d1f2qa2          13 MEGQPLFLRCHGWRNWDVYKVIYYKDGEAL-KY-------------WYENHNISITNATVEDSGTYYCTGKVW   71 (89)
T ss_dssp             ETTSCEEEEEEEGGGCCEEEEEEEETTEEC-CS-------------CCCSSEEEESSCCGGGCEEEEEEEEET
T ss_pred             eCCCEEEEEEEecCCCCCeEEEEEEeeecc-cc-------------ccccceEEEeeeeeecCcEEEEEEEeC
Confidence            46788999999975 467789999998431 10             122567999999999999999999753

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2.1e-09  Score=62.95  Aligned_cols=54  Identities=9%  Similarity=-0.097  Sum_probs=41.1

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|-+.|.|.|.+.|+|++....                   ..+.|.+++++|+|.|.|.|.+.
T Consensus        16 ~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~-------------------~~~~~~~v~~~d~G~Y~C~A~N~   69 (84)
T d2oz4a3          16 WPENSQQTPMCQAWGNPLPELKCLKDGTFPL-------------------PIGESVTVTRDLEGTYLCRARST   69 (84)
T ss_dssp             EETTCEECCCCCCEEESCCEEEEEETTTEEC-------------------CTTSCEECCGGGCEEEEEEEEET
T ss_pred             EeCCCEEEEEEEEeEcCccEEEEEEeeccce-------------------eeeeeeccccCCCCEEEEEEEcC
Confidence            3456778888988899999999999875321                   11234568899999999999863

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.6e-08  Score=62.51  Aligned_cols=41  Identities=37%  Similarity=0.528  Sum_probs=34.1

Q ss_pred             cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      .+++++|+.+..++...++.+|.|.+++.+|+|.|.|.+.+
T Consensus        69 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~  109 (124)
T d1eaja_          69 YPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKK  109 (124)
T ss_dssp             SSTTTTTEEECCSCGGGTBCCEEECSCCGGGCEEEEEEEEE
T ss_pred             CcccccceEEEccCCCCCEEEEEEcccEEccCEEEEEEEEE
Confidence            35678899887655556788999999999999999999864

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.65  E-value=6.3e-08  Score=60.04  Aligned_cols=70  Identities=23%  Similarity=0.272  Sum_probs=46.2

Q ss_pred             hccceeeEEeec---CCCccEEEEecCCC--------------CcccccccceEEEecCCCCCCeeeEEEcccCCCCCEE
Q psy534           10 IFQMLSVGDFAD---DEDIPVYIWYDSYP--------------THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGW   72 (145)
Q Consensus        10 ~~~~~~~~~w~~---g~p~p~~~w~k~~~--------------~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~   72 (145)
                      .+..+.+-|-+.   +.....+.|++...              ......+..|..+.......++.+|.|.+++.+|+|.
T Consensus        16 ~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~   95 (126)
T d1pkoa_          16 VGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGG   95 (126)
T ss_dssp             TTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGGGCEE
T ss_pred             cCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchhHCeE
Confidence            345556666543   22334566766532              1123456778887665555668999999999999999


Q ss_pred             EEEEEEE
Q psy534           73 YECKVVF   79 (145)
Q Consensus        73 Y~C~~~~   79 (145)
                      |.|++.+
T Consensus        96 Y~C~v~~  102 (126)
T d1pkoa_          96 YTCFFRD  102 (126)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999964

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2e-08  Score=60.88  Aligned_cols=73  Identities=8%  Similarity=-0.006  Sum_probs=48.8

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceE--EEecCCCCC----CeeeEEEcccCCCCCEE-EEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRI--SRVDKESPF----GMASLNLTKIRESDQGW-YECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~--~~~~~~~~~----~~~sL~I~~v~~~D~G~-Y~C~~~~~   80 (145)
                      ..++..+.+.|-+.|.|.|.+.|++++..........+.  .........    ....|.|.+++.+|.|. |.|.|.|.
T Consensus        14 v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~N~   93 (107)
T d1iray3          14 VDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNT   93 (107)
T ss_dssp             CCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEECS
T ss_pred             EeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEEeC
Confidence            467889999999999999999999887432111111111  111110111    14579999999999995 99999864

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.60  E-value=7.1e-09  Score=61.14  Aligned_cols=64  Identities=8%  Similarity=-0.160  Sum_probs=45.7

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+..+.+.|-. +.|.|.+.|++++... .+  ..|..+..+   ....+|.|.+++.+|+|.|.|.+.+
T Consensus        14 ~~G~~~~~~c~v-s~p~~~v~W~k~g~~i-~~--~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~c~a~n   77 (89)
T d1tiua_          14 FVGETAHFEIEL-SEPDVHGQWKLKGQPL-TA--SPDCEIIED---GKKHILILHNCQLGMTGEVSFQAAN   77 (89)
T ss_dssp             ETTSCCCEEEBC-SSSSCCCBCCSSSCCC-CS--SSSCEEEEC---SSCEEEECCSCCSCCCSEECCBCSS
T ss_pred             eCCCcEEEEEEE-CCCCcEEEEEEeeeec-cc--ceeEEEEee---ceeEEEEEcCCChhcCEEEEEEECc
Confidence            345666777765 6788999999998653 22  234444322   3467899999999999999998753

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.8e-08  Score=58.59  Aligned_cols=43  Identities=23%  Similarity=0.377  Sum_probs=34.8

Q ss_pred             CCCCcEEEEEEeE----------------EecCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534           87 HKNGTWFHLDVHG----------------VFNDGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus        87 ~~~g~~~~l~c~~----------------~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ...|+.++|.|..                ....+..|.|.+++.+|+|.|+|.|.|..|
T Consensus        11 v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~~~~l~i~~v~~~DsG~Y~C~a~N~~g   69 (84)
T d2nxyb2          11 LLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQK   69 (84)
T ss_dssp             EETTCCEEEEEECCTTCCCEEEEECTTCCEEEESSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EECCCeEEEEEEeEcCCchheEEEeecccceeeeeeeeeeecccccccEEEEEEEeCCC
Confidence            3568888888881                112335899999999999999999999998

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=3.1e-08  Score=60.95  Aligned_cols=40  Identities=25%  Similarity=0.426  Sum_probs=31.9

Q ss_pred             cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      .+.|++|+.+..+ ...++.+|.|.+++.+|+|.|+|.+.+
T Consensus        63 ~~~~~~R~~~~~~-~~~~~~sL~I~~v~~~DsG~Y~C~v~~  102 (119)
T d1neua_          63 VGTFKERIQWVGD-PSWKDGSIVIHNLDYSDNGTFTCDVKN  102 (119)
T ss_dssp             SSTTTTCEEECCB-GGGTBCCEEECSCCGGGCEEEEEEEEC
T ss_pred             CccceeEEEEEEE-CCCCEEEEEECCCChHHCEEEEEEEEE
Confidence            3568889887533 344578999999999999999999863

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.55  E-value=4.8e-08  Score=57.33  Aligned_cols=27  Identities=19%  Similarity=0.362  Sum_probs=24.4

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+..|.|.+++.+|+|.|+|.|.|..|
T Consensus        47 ~~~~l~i~~v~~~dsG~Y~C~a~n~~g   73 (88)
T d2fcba2          47 SDPNFSIPQANHSHSGDYHCTGNIGYT   73 (88)
T ss_dssp             SCCEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             cccccccCccCHHHCCeEEEEEEeCCC
Confidence            345899999999999999999999987

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.55  E-value=1.8e-08  Score=61.89  Aligned_cols=66  Identities=14%  Similarity=0.180  Sum_probs=48.2

Q ss_pred             hhccceeeEEee-cCCCccEEEEecCCCCccccc----ccceEEEecCCCCCCeeeEEEcccCCCCCE---EEEEEEEEe
Q psy534            9 SIFQMLSVGDFA-DDEDIPVYIWYDSYPTHEAEE----YKGRISRVDKESPFGMASLNLTKIRESDQG---WYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~-~g~p~p~~~w~k~~~~~~~~~----~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G---~Y~C~~~~~   80 (145)
                      -++.++.+.|-+ .|.|.|.+.|++++.......    ...++.+      ..+++|.|.+++.+|+|   .|.|.|.|.
T Consensus        15 ~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~------~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~   88 (111)
T d1biha2          15 IEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITA------GPDGNLYFTIVTKEDVSDIYKYVCTAKNA   88 (111)
T ss_dssp             BTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEE------CTTSCEEEEEECGGGCCSSEEEEEEEECT
T ss_pred             cCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeecc------ccccccEEeeeEeeccCCceEEEEEEEeC
Confidence            457888999986 799999999999865422111    1123333      23788999999999877   799999863

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.53  E-value=3.3e-08  Score=58.30  Aligned_cols=27  Identities=30%  Similarity=0.455  Sum_probs=24.9

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+..|.|.+++.+|+|.|+|.|.|.+|
T Consensus        53 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G   79 (91)
T d1cs6a3          53 SEPLLHIQNVDFEDEGTYECEAENIKG   79 (91)
T ss_dssp             SSSEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             eeeEEEeCCCCccCCEEEEEEEEECCC
Confidence            345899999999999999999999999

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2e-07  Score=56.54  Aligned_cols=59  Identities=24%  Similarity=0.318  Sum_probs=40.4

Q ss_pred             eEEeecCCCccEEEEecCCC--CcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           16 VGDFADDEDIPVYIWYDSYP--THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        16 ~~~w~~g~p~p~~~w~k~~~--~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      .+.|.+....+++.++.+..  ...+++|.+|+.+.     .++.+|.|++++.+|+|.|+|.+..
T Consensus        30 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~sL~I~~v~~~D~G~Y~C~V~~   90 (110)
T d1ncna_          30 VVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFD-----SDSWTLRLHNLQIKDKGLYQCIIHH   90 (110)
T ss_dssp             EEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEE-----TTTTEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEeeccccceEEEEeCCceecccCCcceEEEEecc-----CCeEEEEECCCChhHCEEEEEEEEe
Confidence            34444444445555544421  23456788888774     3488999999999999999999863

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=4.7e-08  Score=57.67  Aligned_cols=26  Identities=15%  Similarity=0.186  Sum_probs=24.1

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ...|.|.+++.+|+|.|+|+|+|..|
T Consensus        54 ~~~L~i~~v~~~D~G~Y~C~Asn~~g   79 (90)
T d1gsma1          54 RSVLTVRNASLSAAGTRVCVGSCGGR   79 (90)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             eeeEEcCccChhhCCcEEEEEEeCCC
Confidence            35799999999999999999999988

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=4.5e-08  Score=60.61  Aligned_cols=40  Identities=23%  Similarity=0.297  Sum_probs=32.7

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ....+++|+.+..+ ...++++|.|++|+++|+|.|+|++.
T Consensus        64 ~~~~~~~R~~~~~~-~~~~~~sL~I~~v~~~DsG~Y~C~v~  103 (121)
T d2g5ra1          64 VQEETRDRFHLLGD-PQTKNCTLSIRDARMSDAGRYFFRME  103 (121)
T ss_dssp             CCTTTTTTEEECSC-GGGTBCCEEECSCCGGGCEEEEEEEE
T ss_pred             eccccceEEEEeee-CcCCEEEEEECCCChHHCEEEEEEEE
Confidence            44567889987643 44568999999999999999999985

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.51  E-value=1.9e-07  Score=55.81  Aligned_cols=24  Identities=21%  Similarity=0.385  Sum_probs=22.2

Q ss_pred             CeeeEEEcccCCCCCEEEEEEEEE
Q psy534           56 GMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        56 ~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      .+++|.|.+++.+|+|.|.|++.+
T Consensus        58 ~ngSL~I~nl~~~DsG~Y~c~v~~   81 (98)
T d1hnga1          58 ANGDLKIKNLTRDDSGTYNVTVYS   81 (98)
T ss_dssp             TTSCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCccEEEeCCCHHHCEEEEEEEEe
Confidence            488999999999999999999974

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=8.9e-08  Score=58.31  Aligned_cols=40  Identities=18%  Similarity=0.380  Sum_probs=32.6

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ....+.+|+.+..+ ...++++|.|.+++.+|+|.|.|++.
T Consensus        60 ~~~~~~~r~~~~~~-~~~~~~sL~I~~v~~~DsG~Y~C~v~   99 (118)
T d1qfoa_          60 VDKRFRGRAELMGN-MDHKVCNLLLKDLKPEDSGTYNFRFE   99 (118)
T ss_dssp             SCTTTTTTEEECSC-GGGTBCCEEECSCCGGGCEEEEEEEE
T ss_pred             cccccCCCeEEEEe-CcCCEEEEEECCCChhHCEEEEEEEE
Confidence            44567889887543 44568999999999999999999985

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=7.2e-08  Score=56.60  Aligned_cols=26  Identities=19%  Similarity=0.243  Sum_probs=24.3

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ...|.|.+++.+|+|.|+|.|.|..|
T Consensus        53 ~~~L~I~~v~~~d~G~Y~C~a~N~~g   78 (90)
T d1vcaa2          53 TSTLTMNPVSFGNEHSYLCTATCESR   78 (90)
T ss_dssp             EEEEEESSCCGGGCSEEEEEEEETTE
T ss_pred             CcEEEEecccccccceEEEEEEeCCC
Confidence            34799999999999999999999998

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.46  E-value=6.6e-08  Score=56.28  Aligned_cols=55  Identities=13%  Similarity=0.114  Sum_probs=42.3

Q ss_pred             hhhccceeeEEeecCCCcc-EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIP-VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p-~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+.++.+.|.+.+.|.+ .+.|++++.. +               ......|.|.+++.+|+|.|+|++.
T Consensus        16 v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~-~---------------~~~~~~l~i~~v~~~dsG~Y~C~a~   71 (85)
T d2fcba1          16 VLQEDSVTLTCRGTHSPESDSIQWFHNGNL-I---------------PTHTQPSYRFKANNNDSGEYTCQTG   71 (85)
T ss_dssp             EETTCEEEEEEECSSCCCTTCCEEEETTEE-C---------------TTCCSSEEEEECCGGGCEEEEEECT
T ss_pred             EcCCCeEEEEEEEeeccceeEEEeeccccc-c---------------cccccceEEeeccccCCcEEEEECC
Confidence            3457788999999988766 4677887633 1               1236779999999999999999875

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=1.4e-07  Score=55.05  Aligned_cols=25  Identities=28%  Similarity=0.612  Sum_probs=24.0

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus        54 ~~L~i~~v~~~d~G~Y~C~a~N~~G   78 (89)
T d1gl4b_          54 GILTIRNVQPSDAGTYVCTGSNMFA   78 (89)
T ss_dssp             TEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             eEEEEecCCcccCEEEEEEEEECCC
Confidence            4899999999999999999999999

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=1.7e-07  Score=55.51  Aligned_cols=27  Identities=30%  Similarity=0.637  Sum_probs=24.8

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ....|.|.+++.+|+|.|+|.|.|.+|
T Consensus        54 ~~~~L~I~~v~~~d~G~Y~C~a~N~~g   80 (96)
T d1l6za2          54 NNSILRIDPIKREDAGEYQCEISNPVS   80 (96)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEESSSC
T ss_pred             CceEEEEeccchhhceEEEEEEEeCCC
Confidence            445899999999999999999999988

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.43  E-value=5.9e-08  Score=56.41  Aligned_cols=55  Identities=11%  Similarity=0.079  Sum_probs=41.8

Q ss_pred             hhhccceeeEEeecCCCccEEE-EecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYI-WYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~-w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+.++.+.|.+.|.|.+.+. ||+++..           +.     ....+|.|.+++.+|+|.|+|++.
T Consensus        17 v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~-----------~~-----~~~~~l~i~~~~~~d~G~Y~C~a~   72 (84)
T d1fnla1          17 VLEKDSVTLKCQGAYSPEDNSTQWFHNESL-----------IS-----SQASSYFIDAATVNDSGEYRCQTN   72 (84)
T ss_dssp             EETTCCEEEEEECCCBTTBCCCEEEETTEE-----------EE-----SSCSEEEESSCCGGGCEEEEEECS
T ss_pred             EeCCCeEEEEEEeccCCCCeEEEEeeecee-----------ee-----ecceeeEecCCcccCCEEEEEEcc
Confidence            4467788999999998887655 5666532           11     236789999999999999999985

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.43  E-value=1.6e-07  Score=54.43  Aligned_cols=28  Identities=18%  Similarity=0.362  Sum_probs=24.7

Q ss_pred             cCCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          102 NDGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       102 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..+..|.|.+++.+|+|.|+|.|.|..+
T Consensus        49 ~~~~~l~i~~~~~~d~G~Y~C~a~~s~~   76 (84)
T d1fnla1          49 SQASSYFIDAATVNDSGEYRCQTNLSTL   76 (84)
T ss_dssp             SSCSEEEESSCCGGGCEEEEEECSSSCC
T ss_pred             ecceeeEecCCcccCCEEEEEEccCCCc
Confidence            3456899999999999999999999876

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=8.5e-08  Score=55.43  Aligned_cols=48  Identities=27%  Similarity=0.350  Sum_probs=36.5

Q ss_pred             CCCcEEEEEEeE-----------------EecCCcEEEEcccCCCCCeeeEEEEecCCC---CcEEEE
Q psy534           88 KNGTWFHLDVHG-----------------VFNDGTELRISNIRSQDIGDYTCLATHVLY---PDLLVV  135 (145)
Q Consensus        88 ~~g~~~~l~c~~-----------------~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g---~~~~v~  135 (145)
                      ..|+.+.|.|..                 ....+..|.|.+++.+|+|.|.|.|.|..+   +.|.|.
T Consensus        14 ~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~~s~~S~~v~l~V~   81 (82)
T d1f2qa1          14 FKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVF   81 (82)
T ss_dssp             ETTCCEEEECCTTCC----CCEEEETTEECSCCSSEEEECSCCGGGCEEEEEECTTSSCCCCEEEEEE
T ss_pred             eCCCeEEEEEEEeeeeeecceeeeeeeeeeecccceeEECCCChhhCCcEEEEecCCCCcccEEEEEE
Confidence            458888888871                 112345899999999999999999999876   555554

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.42  E-value=1e-07  Score=56.05  Aligned_cols=25  Identities=20%  Similarity=0.335  Sum_probs=23.3

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus        51 ~~l~I~~v~~~dsG~Y~C~a~n~~~   75 (89)
T d1fnla2          51 SDFHIPKATLKDSGSYFCRGLVGSK   75 (89)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cccEECccceeccceEEEEEEeCCC
Confidence            4799999999999999999999887

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.41  E-value=1.3e-07  Score=56.23  Aligned_cols=27  Identities=26%  Similarity=0.382  Sum_probs=24.7

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+.+|.|.+++.+|+|.|+|.|.|.+|
T Consensus        59 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G   85 (97)
T d1biha3          59 SGKRLLFKTTLPEDEGVYTCEVDNGVG   85 (97)
T ss_dssp             TTSEEEESSCCGGGCEEEEEEECCSSS
T ss_pred             CCCEEEEEeccccccEEEEEEEEECCC
Confidence            345899999999999999999999998

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=5.5e-08  Score=56.27  Aligned_cols=55  Identities=13%  Similarity=0.018  Sum_probs=38.5

Q ss_pred             hhhccceeeEEeecCCCccEEEE-ecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIW-YDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w-~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+.++.+.|.+.|.|.+...| ++++.. +               ...+.+|.|.+++.+|+|.|.|++.
T Consensus        13 v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~l~i~~v~~~d~G~Y~C~a~   68 (82)
T d1f2qa1          13 IFKGENVTLTCNGNNFFEVSSTKWFHNGSL-S---------------EETNSSLNIVNAKFEDSGEYKCQHQ   68 (82)
T ss_dssp             EETTCCEEEECCTTCC----CCEEEETTEE-C---------------SCCSSEEEECSCCGGGCEEEEEECT
T ss_pred             EeCCCeEEEEEEEeeeeeecceeeeeeeee-e---------------ecccceeEECCCChhhCCcEEEEec
Confidence            34577889999999988876554 665532 1               1236789999999999999999875

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.2e-07  Score=55.62  Aligned_cols=26  Identities=23%  Similarity=0.419  Sum_probs=23.8

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ...|.|.+++.+|+|.|+|.|.|..|
T Consensus        48 ~~~l~i~~~~~~dsG~Y~C~a~n~~~   73 (89)
T d1f2qa2          48 NHNISITNATVEDSGTYYCTGKVWQL   73 (89)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cceEEEeeeeeecCcEEEEEEEeCCC
Confidence            35799999999999999999999876

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.40  E-value=2e-07  Score=55.59  Aligned_cols=26  Identities=31%  Similarity=0.570  Sum_probs=24.4

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ...|.|.+++.+|+|.|+|.|+|..|
T Consensus        62 ~~~L~I~~v~~~D~G~Y~C~a~N~~G   87 (100)
T d1qz1a3          62 SSELTIRNVDKNDEAEYVCIAENKAG   87 (100)
T ss_dssp             SCEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             ceEEEeCCCCcccCEEEEEEEEECCC
Confidence            45899999999999999999999998

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=1.9e-07  Score=56.51  Aligned_cols=25  Identities=24%  Similarity=0.395  Sum_probs=23.6

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|+|.+|
T Consensus        67 ~~l~I~~v~~~D~G~Y~C~a~N~~G   91 (110)
T d1f97a2          67 GDLIFDPVTAFDSGEYYCQAQNGYG   91 (110)
T ss_dssp             CCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             cceEECCCCccCCEEEEEEEEECCC
Confidence            4799999999999999999999998

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.3e-07  Score=57.03  Aligned_cols=38  Identities=34%  Similarity=0.362  Sum_probs=31.6

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.+++|+++..    .++.+|.|++++.+|+|.|.|.+..
T Consensus        49 ~~~~~~~r~~~~~----~g~~sL~I~~v~~~D~G~Y~C~V~~   86 (105)
T d1dr9a1          49 IWPEYKNRTIFDI----TNNLSIVILALRPSDEGTYECVVLK   86 (105)
T ss_dssp             ECHHHHTTEEEES----TTTTEEEECSCCGGGCEEEEEEEEE
T ss_pred             eecceeeeeeecc----CCcEEEEECcCChHHCeEEEEEEEe
Confidence            4566888988743    3578999999999999999999974

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=3.3e-07  Score=54.78  Aligned_cols=25  Identities=32%  Similarity=0.387  Sum_probs=23.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus        56 ~~L~I~~~~~~D~G~Y~C~a~N~~G   80 (101)
T d2cqva1          56 SKLTILAARQEHCGCYTLLVENKLG   80 (101)
T ss_dssp             EEEEETTCCTTTCEEEEEEEECSSC
T ss_pred             eEEEEeeCCcccCEEEEEEEEECCC
Confidence            4799999999999999999999999

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=8.8e-08  Score=59.33  Aligned_cols=25  Identities=16%  Similarity=0.239  Sum_probs=23.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|+|.+|
T Consensus        94 ~~L~I~~v~~~D~G~Y~C~a~N~~G  118 (130)
T d1gxea_          94 SIFTVEGAEKEDEGVYTVTVKNPVG  118 (130)
T ss_dssp             EEEECSCCCTTTCEEEEEEEECSSC
T ss_pred             EEEEECcCChhcCEEEEEEEEECCC
Confidence            4799999999999999999999999

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.37  E-value=2.9e-07  Score=53.84  Aligned_cols=25  Identities=32%  Similarity=0.449  Sum_probs=23.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus        54 ~~L~i~~v~~~d~G~Y~C~a~N~~G   78 (89)
T d1biha4          54 SGLVIKGVKNGDKGYYGCRATNEHG   78 (89)
T ss_dssp             TEEEESSCCSTTCEEEEEEEEETTE
T ss_pred             eeEEECCCChhhCEEEEEEEEECCC
Confidence            3799999999999999999999999

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.36  E-value=1.7e-07  Score=54.47  Aligned_cols=32  Identities=22%  Similarity=0.300  Sum_probs=26.6

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC---CcEEEE
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY---PDLLVV  135 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g---~~~~v~  135 (145)
                      ...|.|.+++.+|+|.|+|.|.|..+   +.++|.
T Consensus        50 ~~~l~i~~v~~~dsG~Y~C~a~ns~~S~~v~l~V~   84 (85)
T d2fcba1          50 TQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVL   84 (85)
T ss_dssp             CSSEEEEECCGGGCEEEEEECTTSBCCCCEEEEEE
T ss_pred             ccceEEeeccccCCcEEEEECCCCcccccEEEEEE
Confidence            35799999999999999999999876   555554

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=7.3e-08  Score=57.18  Aligned_cols=24  Identities=21%  Similarity=0.425  Sum_probs=23.3

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.++..+|+|.|+|.|.|..|
T Consensus        61 ~L~I~~v~~~D~G~Y~C~a~N~~G   84 (96)
T d2c9aa1          61 SFNVVNTTKRDAGKYRCMIRTEGG   84 (96)
T ss_dssp             EEEECSCCGGGCSEEEEEEEETTE
T ss_pred             EEEECCCCHHHCeEEEEEEEeCCC
Confidence            699999999999999999999998

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=98.36  E-value=1.2e-07  Score=56.50  Aligned_cols=25  Identities=24%  Similarity=0.453  Sum_probs=24.0

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+|.|.+++.+|+|.|+|.|.|..|
T Consensus        62 ~~L~I~~v~~~D~G~Y~C~a~N~~G   86 (97)
T d3dara1          62 WSLIMESVVPSDKGNYTCVVENEYG   86 (97)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEECCCCcccCEEEEEEEEECCC
Confidence            4899999999999999999999998

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=6.5e-07  Score=54.66  Aligned_cols=39  Identities=23%  Similarity=0.452  Sum_probs=29.6

Q ss_pred             cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      .+.+++|+.+..+ ...+..+|.|.+++.+|+|.|+|.+.
T Consensus        58 ~~~~~~R~~~~~~-~~~~~~~Lti~~l~~~Dsg~Y~Cav~   96 (113)
T d1smoa_          58 HPVQVGRIILEDY-HDHGLLRVRMVNLQVEDSGLYQCVIY   96 (113)
T ss_dssp             CCEEETTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             cceECCeEEEEEE-CCCCEEEEEEccCCcccCceEEEEEE
Confidence            3446678876432 34456889999999999999999874

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=3.4e-07  Score=54.68  Aligned_cols=25  Identities=24%  Similarity=0.522  Sum_probs=23.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+|.|.+++.+|+|.|+|.|.|..|
T Consensus        65 ~tL~I~~v~~~D~G~Y~C~a~n~~g   89 (102)
T d1f97a1          65 SGITFSSVTRKDNGEYTCMVSEEGG   89 (102)
T ss_dssp             TEEEESCCCGGGCEEEEEEEEETTS
T ss_pred             CEEEEeECCccCCEEEEEEEEECCC
Confidence            3799999999999999999999998

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.7e-07  Score=55.47  Aligned_cols=27  Identities=22%  Similarity=0.480  Sum_probs=24.2

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLYP  130 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~  130 (145)
                      +..|.|.+++.+|+|.|+|.|.|..+.
T Consensus        59 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~   85 (93)
T d1n26a1          59 GRRLLLRSVQLHDSGNYSCYRAGRPAG   85 (93)
T ss_dssp             SSEEEECSCCGGGCEEEEEESSSSCSC
T ss_pred             CCEEEECCCChhcCEEEEEEECCcccc
Confidence            458999999999999999999998763

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.29  E-value=4e-07  Score=53.28  Aligned_cols=25  Identities=36%  Similarity=0.522  Sum_probs=23.9

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus        53 ~~L~i~~v~~~D~G~Y~C~a~N~~G   77 (89)
T d1cs6a4          53 GELRFSKLVLEDSGMYQCVAENKHG   77 (89)
T ss_dssp             TEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             eeEEEEeecccCCEEEEEEEEeCCC
Confidence            4899999999999999999999998

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=6.7e-07  Score=54.64  Aligned_cols=38  Identities=24%  Similarity=0.518  Sum_probs=29.7

Q ss_pred             ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           40 EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        40 ~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+.+|..+.. +...++.+|.|.+++.+|+|.|+|.+.
T Consensus        57 ~~~~~r~~~~~-~~~~~~~sL~I~~l~~~DsG~Y~C~v~   94 (116)
T d1xeda_          57 SKYAGRANLTN-FPENGTFVVNIAQLSQDDSGRYKCGLG   94 (116)
T ss_dssp             TTTTTTEEEEE-ETTTTEEEEEECSCCGGGCEEEEEEES
T ss_pred             ceecCCccEee-eCCCCEEEEEEhhhCcCCCEEEEEEEE
Confidence            45667776543 245668999999999999999999874

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=8.3e-07  Score=53.37  Aligned_cols=65  Identities=6%  Similarity=0.035  Sum_probs=46.4

Q ss_pred             hhhccceeeEEeecC-CCcc--EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEec
Q psy534            8 KSIFQMLSVGDFADD-EDIP--VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFLN   81 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g-~p~p--~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~   81 (145)
                      ...+.++.+.|-+.| .|.|  .+.|++++.. +...     ..   .......+|.|..++.+|.|.|+|+|.+..
T Consensus        16 v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~-l~~~-----~~---~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~   83 (103)
T d1iama1          16 QPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKE-LKRE-----PA---VGEPAEVTTTVLVRRDHHGAQFSCRTELDL   83 (103)
T ss_dssp             ECTTSEEEEEEEEECCBCGGGEEEEEEETTEE-EEEE-----EC---CTTTEEEEEEEECCSSCSSCEEEEEEEEEC
T ss_pred             EeCCCEEEEEEEecCCCCCCceEEEEcccccc-cccc-----cc---ccccceEEEEEeeehhHCCCEEEEEEEeCC
Confidence            356788999999985 5655  6889999854 2111     11   012346789999999999999999998753

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.27  E-value=2.5e-07  Score=54.47  Aligned_cols=25  Identities=20%  Similarity=0.290  Sum_probs=23.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus        58 ~~L~I~~~~~~D~G~Y~c~a~N~~G   82 (93)
T d1wiua_          58 TSIFFPSAKRADSGNYKLKVKNELG   82 (93)
T ss_dssp             EEEECTTBCGGGCEEEEEEEEETTE
T ss_pred             eeeccccccccccEEEEEEEEECCC
Confidence            4799999999999999999999999

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=3.6e-07  Score=53.89  Aligned_cols=26  Identities=31%  Similarity=0.483  Sum_probs=24.1

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +.+|.|.+++.+|+|.|+|.|.|..|
T Consensus        49 ~~~L~I~~v~~~DsG~Y~C~A~n~~g   74 (92)
T d1olza1          49 RKNLLIFNLSEGDSGVYQCLSEERVK   74 (92)
T ss_dssp             TTCEEECSCCGGGCEEEEEEEEEECS
T ss_pred             eeEEEECCCCHHHCcEEEEEEEEcCC
Confidence            34899999999999999999999988

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.26  E-value=1.9e-07  Score=56.42  Aligned_cols=26  Identities=31%  Similarity=0.637  Sum_probs=24.1

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ...|.|.+++.+|+|.|+|.|+|..|
T Consensus        60 ~~~L~I~~v~~~D~G~Y~C~a~N~~g   85 (105)
T d1cs6a2          60 TGNLYIAKTEASDLGNYSCFATSHID   85 (105)
T ss_dssp             TCCEEESSCCGGGCEEEEEEEEEEET
T ss_pred             CCEEeecccccccCcEEEEEEEECCC
Confidence            34799999999999999999999988

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.25  E-value=2.1e-07  Score=56.10  Aligned_cols=25  Identities=40%  Similarity=0.652  Sum_probs=23.7

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.++..+|+|.|+|.|.|..|
T Consensus        74 ~~L~i~~~~~~D~G~Y~C~a~N~~G   98 (109)
T d2fdbp2          74 EVLYIRNVTFEDAGEYTCLAGNSIG   98 (109)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             EEEEECCCCHHHCeEEEEEEEECCC
Confidence            3799999999999999999999999

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=1.1e-06  Score=53.77  Aligned_cols=70  Identities=16%  Similarity=0.130  Sum_probs=45.3

Q ss_pred             hhhccceeeEEeecCC-CccEEEEecCCC---C---------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEE
Q psy534            8 KSIFQMLSVGDFADDE-DIPVYIWYDSYP---T---------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE   74 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~-p~p~~~w~k~~~---~---------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   74 (145)
                      ...+..+.+-|.+.+. ....+.||+...   +         .....+.+|+.+..+ ......+|.|.+++.+|+|.|+
T Consensus        11 v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~-~~~~~~~L~I~~~~~~Dsg~Yy   89 (114)
T d3bp5a1          11 VSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQL-PNRHDFHMNILDTRRNDSGIYL   89 (114)
T ss_dssp             EETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEEC-TTSSEEEEEESSCCGGGCEEEE
T ss_pred             ECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEe-CCCCEEEEEECccCcCCCeEEE
Confidence            4566777777876533 344567876431   1         012335567665322 2345688999999999999999


Q ss_pred             EEEE
Q psy534           75 CKVV   78 (145)
Q Consensus        75 C~~~   78 (145)
                      |.+.
T Consensus        90 Ca~~   93 (114)
T d3bp5a1          90 CGAI   93 (114)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9875

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.1e-07  Score=56.74  Aligned_cols=72  Identities=14%  Similarity=0.075  Sum_probs=47.3

Q ss_pred             hhhccceeeEEeecCC-CccEEEEecCCCCcccccccceEEEecC-CCCCCeeeEEEcccCCCC-CEEEEEEEEEe
Q psy534            8 KSIFQMLSVGDFADDE-DIPVYIWYDSYPTHEAEEYKGRISRVDK-ESPFGMASLNLTKIRESD-QGWYECKVVFL   80 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~-p~p~~~w~k~~~~~~~~~~~~R~~~~~~-~~~~~~~sL~I~~v~~~D-~G~Y~C~~~~~   80 (145)
                      ...+.++.+.|-+.|. |.+.+.|++++... ...-..+..+... +.......|.|.+++.+| +|.|.|.|.|.
T Consensus        18 ~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i-~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~   92 (115)
T d2crya1          18 ALHGEKGQIKCFIRSTPPPDRIAWSWKENVL-ESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNS   92 (115)
T ss_dssp             CCTTSCCCCCEEECCSSCCSEEEEESSSCEE-CSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECS
T ss_pred             EecCCEEEEEEEeecCCCeeEEEEeeeeeeE-eeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEEC
Confidence            3456788888999885 56689999988642 2222223332211 011123579999999999 69999999764

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.24  E-value=3e-07  Score=53.90  Aligned_cols=25  Identities=20%  Similarity=0.429  Sum_probs=23.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus        55 ~~L~i~~v~~~D~G~Y~C~a~N~~G   79 (91)
T d1tnna_          55 STFEISSVQASDEGNYSVVVENSEG   79 (91)
T ss_dssp             EEEECSSCCSCCCEEEEEECBCSSC
T ss_pred             eEEeecCCCHHHCEEEEEEEEECCC
Confidence            4799999999999999999999999

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.24  E-value=2.2e-06  Score=50.53  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=21.2

Q ss_pred             CCeeeEEEcccCCCCCEEEEEEEE
Q psy534           55 FGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        55 ~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ....+|.|++++.+|+|.|+|.+.
T Consensus        54 ~~~~sL~I~~~~~~Dsg~YyCa~~   77 (94)
T d2gj6d1          54 SQYVSLLIRDSQPSDSATYLCAVT   77 (94)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEeEEeeccccCcCccceeeEe
Confidence            346889999999999999999875

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=3e-07  Score=54.05  Aligned_cols=25  Identities=24%  Similarity=0.321  Sum_probs=23.2

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+|.|.+++.+|+|.|+|.|.|..+
T Consensus        60 ~sL~I~~l~~~DsG~Y~c~~~n~~~   84 (93)
T d1ccza1          60 GSLTIYNLTSSDEDEYEMESPNITD   84 (93)
T ss_dssp             CCEEECSCCGGGCEEEEEECTTCCS
T ss_pred             eEEEEEecChhhCEEEEEEEECCCc
Confidence            4799999999999999999999876

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=3.7e-07  Score=54.67  Aligned_cols=25  Identities=24%  Similarity=0.503  Sum_probs=23.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus        68 ~~L~I~~v~~~D~G~Y~C~a~n~~G   92 (105)
T d1nbqa1          68 TGITFKSVTREDTGTYTCMVSEEGG   92 (105)
T ss_dssp             TEEECSCCCTTSCSEEEEEEEETTS
T ss_pred             ceEEEecccccceeeEEEEEEECCC
Confidence            4799999999999999999999998

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.20  E-value=9.5e-07  Score=52.27  Aligned_cols=25  Identities=32%  Similarity=0.395  Sum_probs=23.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+|.|.+++.+|+|.|+|.|.|..|
T Consensus        60 ~~L~I~~~~~~D~G~Y~C~a~N~~G   84 (97)
T d1epfa1          60 STLTIYNANIDDAGIYKCVVTAEDG   84 (97)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             eEEEcccCchhhceEEEEEEEeCCC
Confidence            4799999999999999999999998

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.20  E-value=3.1e-07  Score=54.06  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=24.4

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..+|.|.++..+|+|.|+|.|.|..|
T Consensus        57 ~~~L~i~~v~~~D~G~Y~C~a~N~~G   82 (94)
T d1biha1          57 EGSLVFLRPQASDEGHYQCFAETPAG   82 (94)
T ss_dssp             SCCEEESSCCGGGCEEEEEEEEETTE
T ss_pred             ceEEEEeccChhcCeEEEEEEEeCCC
Confidence            35899999999999999999999998

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=9.9e-07  Score=53.32  Aligned_cols=69  Identities=20%  Similarity=0.289  Sum_probs=43.9

Q ss_pred             hhccceeeEEeecCC--CccEEEEecCCC-----------CcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            9 SIFQMLSVGDFADDE--DIPVYIWYDSYP-----------THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~--p~p~~~w~k~~~-----------~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      ..+..+.+-|-+...  ....+.||+...           ......+.+|..+.. +...+..+|.|.+++.+|+|.|+|
T Consensus         9 ~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-~~~~~~~~L~I~~l~~~DsG~Y~C   87 (108)
T d1hkfa_           9 VAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWD-DPDAGFFTVTMTDLREEDSGHYWC   87 (108)
T ss_dssp             CTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEE-ETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             cCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeee-eCCCCEEEEEEhhhCCCCCEEEEE
Confidence            355666667765422  233455765321           012234567776543 245668999999999999999999


Q ss_pred             EEE
Q psy534           76 KVV   78 (145)
Q Consensus        76 ~~~   78 (145)
                      .+.
T Consensus        88 ~v~   90 (108)
T d1hkfa_          88 RIY   90 (108)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            886

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=6.5e-07  Score=54.08  Aligned_cols=68  Identities=18%  Similarity=0.220  Sum_probs=43.8

Q ss_pred             hhccceeeEEeecC-C--CccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADD-E--DIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g-~--p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.++.+.|.+.| .  |.+.+.||+++........ ...   ..........|.|...+.+|.|.|+|+|.+.
T Consensus        15 ~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~-~~~---~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~   85 (106)
T d1zxqa1          15 AVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETF-GKA---APAPQEATATFNSTADREDGHRNFSCLAVLD   85 (106)
T ss_dssp             CTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEEC-CSS---TTCTTCEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             eCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeeccc-ceE---eecccceeEEEEEeeehhcCCcEEEEEEEec
Confidence            46788899999986 4  4558999999854221111 111   1111122455777777888888999999865

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.19  E-value=4.5e-07  Score=53.74  Aligned_cols=24  Identities=29%  Similarity=0.473  Sum_probs=23.2

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|+|.|.|..|
T Consensus        58 ~L~I~~~~~~D~G~Y~C~a~N~~G   81 (97)
T d1koaa1          58 GLTINRVKGDDKGEYTVRAKNSYG   81 (97)
T ss_dssp             EEEESCCCSGGGSCEEEEEEETTE
T ss_pred             EEEeCCCceecCEEEEEEEEECCC
Confidence            699999999999999999999998

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.18  E-value=1.9e-06  Score=52.06  Aligned_cols=68  Identities=13%  Similarity=0.123  Sum_probs=41.8

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC-----------CcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP-----------THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~-----------~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      .+++..+.+-|-..+.....+.||+...           .........|+....   .....+|.|++++.+|+|.|+|.
T Consensus        13 v~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~---~~~~~~L~I~~~~~~Dsa~YyCa   89 (106)
T d1i8ka_          13 VATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSG---TGTDFVFTIENTLSEDVGDYYCL   89 (106)
T ss_dssp             CCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE---ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             ECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeC---CCCeeeecccCCccccCEEEeEe
Confidence            4556667777755443334466775431           011223445555321   13478899999999999999997


Q ss_pred             EE
Q psy534           77 VV   78 (145)
Q Consensus        77 ~~   78 (145)
                      +.
T Consensus        90 ~~   91 (106)
T d1i8ka_          90 QS   91 (106)
T ss_dssp             EC
T ss_pred             cC
Confidence            53

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.17  E-value=1.8e-06  Score=52.90  Aligned_cols=37  Identities=22%  Similarity=0.249  Sum_probs=27.2

Q ss_pred             cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           41 EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        41 ~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+|+....+ ......+|.|.+++.+|+|.|+|.+.
T Consensus        60 ~~~~rf~~~~~-~~~~~~~L~I~~~~~~Dsg~YyCa~~   96 (116)
T d1tvda_          60 FTQGRFSVKHI-LTQKAFHLVISPVRTEDSATYYCAFT   96 (116)
T ss_dssp             GGTTTEEEEEE-GGGTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             ccceEEEEEec-CceeEEeeeecCccccccccceeeEe
Confidence            45567765322 22346789999999999999999875

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=98.17  E-value=7.1e-07  Score=53.34  Aligned_cols=25  Identities=36%  Similarity=0.494  Sum_probs=23.7

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus        65 ~~L~I~~~~~~D~G~Y~C~a~N~~G   89 (102)
T d1fhga_          65 CSLTISEVCGDDDAKYTCKAVNSLG   89 (102)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             eeeEecCCCHHhCEEEEEEEEECCc
Confidence            3699999999999999999999999

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.17  E-value=2.3e-06  Score=52.28  Aligned_cols=71  Identities=18%  Similarity=0.133  Sum_probs=45.2

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC---Cc--------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP---TH--------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~~--------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      +..+.++.+-|-+...+...+.||+...   ..        ......+|+.... .......+|.|.+++.+|+|.|+|.
T Consensus        12 ~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~sL~i~~~~~~Dsg~Y~Ca   90 (114)
T d2cdea1          12 ILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATL-DADTKQSSLHITASQLSDSASYICV   90 (114)
T ss_dssp             EETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECB-CSSSSEEEEEECSCCGGGCSEEEEE
T ss_pred             EeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceee-cCcccccccEEcccChhhCccccee
Confidence            4556677777776655555677776431   00        0112234554422 2344588999999999999999998


Q ss_pred             EEE
Q psy534           77 VVF   79 (145)
Q Consensus        77 ~~~   79 (145)
                      +..
T Consensus        91 ~~~   93 (114)
T d2cdea1          91 VSD   93 (114)
T ss_dssp             EEC
T ss_pred             eec
Confidence            874

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.6e-06  Score=51.44  Aligned_cols=25  Identities=36%  Similarity=0.563  Sum_probs=22.7

Q ss_pred             cEEEEcccC-CCCCeeeEEEEecCCC
Q psy534          105 TELRISNIR-SQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~-~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.++. .+|+|.|+|.|.|.+|
T Consensus        65 ~~L~I~~v~~~~D~G~Y~C~A~N~~G   90 (101)
T d3b5ha1          65 SELHIENLNMEADPGQYRCNGTSSKG   90 (101)
T ss_dssp             EEEEECSCCTTTSSEEEEEEEEETTE
T ss_pred             EEEEEeccccccCCEEEEEEEEECCC
Confidence            479999998 5799999999999999

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.16  E-value=2e-06  Score=52.03  Aligned_cols=69  Identities=20%  Similarity=0.239  Sum_probs=44.2

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC-----------CcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP-----------THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~-----------~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      +.+++..+.+-|-..+.....+.||+...           ........+|+....   ...+.+|.|++++.+|+|.|+|
T Consensus        12 tv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~---~~~~~~L~I~~~~~~Dsa~YyC   88 (107)
T d1ospl1          12 SVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSD---SGKDYTLSITSLQTEDVATYFC   88 (107)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEC---SSSSEEEEESSCCGGGCSEEEE
T ss_pred             EECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceec---CCCeEEeEEcccccccCCcEEE
Confidence            34566777777765544334567776531           111223445665532   2447899999999999999999


Q ss_pred             EEE
Q psy534           76 KVV   78 (145)
Q Consensus        76 ~~~   78 (145)
                      .+.
T Consensus        89 a~~   91 (107)
T d1ospl1          89 QQY   91 (107)
T ss_dssp             EEC
T ss_pred             eec
Confidence            764

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=5.8e-07  Score=52.52  Aligned_cols=24  Identities=21%  Similarity=0.302  Sum_probs=23.1

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|+|.|+|..|
T Consensus        55 ~L~I~~~~~~D~G~Y~C~a~N~~G   78 (91)
T d1rhfa1          55 FLSLKSVERSDAGRYWCQVEDGGE   78 (91)
T ss_dssp             EEEESSCCGGGCEEEEEEESSCTT
T ss_pred             eEEECCCCcccCEEEEEEEEECCC
Confidence            699999999999999999999998

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.15  E-value=7.7e-06  Score=49.72  Aligned_cols=71  Identities=20%  Similarity=0.244  Sum_probs=45.6

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC--C-c--------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP--T-H--------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~--~-~--------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      +..+..+.+-|...+.....+.||+...  . .        ....+.+|...... ......+|.|.+++.+|+|.|+|.
T Consensus        12 v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~Dsg~YyCa   90 (113)
T d2bnqd1          12 VPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLD-KSSGRSTLYIAASQPGDSATYLCA   90 (113)
T ss_dssp             EETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEE-TTTTEEEEEESSCCGGGCEEEEEE
T ss_pred             EcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeec-cCCCEEEeeeecCCCCCCcEEeEe
Confidence            4556677777877665556677876431  0 0        01123444443221 235578999999999999999998


Q ss_pred             EEE
Q psy534           77 VVF   79 (145)
Q Consensus        77 ~~~   79 (145)
                      +..
T Consensus        91 ~~~   93 (113)
T d2bnqd1          91 VRP   93 (113)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            864

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.4e-07  Score=57.22  Aligned_cols=38  Identities=21%  Similarity=0.240  Sum_probs=30.6

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC-----CcEEEEeCeeEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY-----PDLLVVLGSFHIHT  143 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g-----~~~~v~~~~~~~~~  143 (145)
                      .|.|.++..+|+|.|+|.|+|.+|     ..+.|...++...|
T Consensus        64 ~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~v~~~P~~~~P  106 (107)
T d1he7a_          64 CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNP  106 (107)
T ss_dssp             EEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCCSCTTSCCC
T ss_pred             EEEECcccHHHCcEEEEEEEeCCCEEEEEEEEEEEcCCCCcCc
Confidence            699999999999999999999999     55555555555444

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.14  E-value=1.4e-06  Score=51.60  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=23.3

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|+|.|.|..|
T Consensus        62 ~L~I~~~~~~D~G~Y~c~a~N~~G   85 (98)
T d1g1ca_          62 ELVIRDVTGEDSASIMVKAINIAG   85 (98)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTE
T ss_pred             EEEeccCccccCEEEEEEEEECCc
Confidence            799999999999999999999999

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=5e-07  Score=53.99  Aligned_cols=25  Identities=28%  Similarity=0.488  Sum_probs=23.7

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|+|.+|
T Consensus        66 ~~l~I~~v~~~D~G~Y~C~a~N~~G   90 (104)
T d1nbqa2          66 GELVFDPLSASDTGEYSCEARNGYG   90 (104)
T ss_dssp             CCEEESSCCGGGCCCEEEEEECSSS
T ss_pred             cceEECCCCcccCcEEEEEEEECCC
Confidence            4799999999999999999999998

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.13  E-value=1e-06  Score=51.70  Aligned_cols=27  Identities=26%  Similarity=0.460  Sum_probs=24.1

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCCCc
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLYPD  131 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~  131 (145)
                      ..|.|.+++.+|+|.|+|.|.|..+.+
T Consensus        56 ~~L~I~~~~~~D~G~Y~C~a~n~~~~~   82 (92)
T d1epfa2          56 NYLQIRGIKKTDEGTYRCEGRILARGE   82 (92)
T ss_dssp             SCEEETTCCGGGCEEEEEEEEEGGGTE
T ss_pred             eeEEECCCCHHhCEEEEEEEEECcCCE
Confidence            479999999999999999999987733

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=6.3e-07  Score=53.74  Aligned_cols=33  Identities=21%  Similarity=0.348  Sum_probs=28.0

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC-----CcEEEEe
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY-----PDLLVVL  136 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g-----~~~~v~~  136 (145)
                      +.+|.|.+++.+|+|.|+|.|.|..|     ..|.|+.
T Consensus        58 ~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L~V~~   95 (101)
T d1iray1          58 KEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVE   95 (101)
T ss_dssp             TTEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCEEEeccceecCCEEEEEEEECCCCeEEEEEEEEEEe
Confidence            34899999999999999999999998     5555543

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2e-06  Score=51.42  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=22.8

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|+|.|+|..|
T Consensus        66 ~L~I~~v~~~D~G~Y~C~A~N~~G   89 (104)
T d2aw2a1          66 ILHFEPVLPNDNGSYRCSANFQSN   89 (104)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEccccHHHCCeEEEEEEcCCC
Confidence            599999999999999999999988

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.7e-06  Score=50.48  Aligned_cols=30  Identities=23%  Similarity=0.249  Sum_probs=24.7

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC-CcEEE
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY-PDLLV  134 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g-~~~~v  134 (145)
                      ..|.|.+++.+|+|.|+|.|.|..+ .+++|
T Consensus        57 ~~L~I~~v~~~D~G~Y~C~a~n~~~~a~l~V   87 (90)
T d1x44a1          57 HILIIEGATKADAAEYSVMTTGGQSSAKLSV   87 (90)
T ss_dssp             EEEEEEEECTTTCSEEEEEETTEEEEEEEEE
T ss_pred             cEEEECccccccCEEEEEEEecceEEEEEEE
Confidence            3799999999999999999998655 44444

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.07  E-value=3.2e-06  Score=51.04  Aligned_cols=69  Identities=14%  Similarity=0.136  Sum_probs=42.9

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC---C--------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP---T--------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~--------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      +++.+.++.+-|-........+.||+...   +        ........|+....   ...+.+|.|++++.+|+|.|+|
T Consensus        11 ~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~L~I~~~~~~DsA~YyC   87 (106)
T d1a0ql1          11 SASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSG---SGRDYSFSISNLEPEDIATYYC   87 (106)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE---ETTEEEEEECSCCGGGCSEEEE
T ss_pred             EECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeec---CCCEeeeEehhhcccCCEeEEE
Confidence            35567777777765544444467776431   0        11122344554422   1346889999999999999999


Q ss_pred             EEE
Q psy534           76 KVV   78 (145)
Q Consensus        76 ~~~   78 (145)
                      .+.
T Consensus        88 a~~   90 (106)
T d1a0ql1          88 LQY   90 (106)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            763

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.07  E-value=3.9e-06  Score=51.30  Aligned_cols=72  Identities=11%  Similarity=0.092  Sum_probs=43.5

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC---C--------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP---T--------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~--------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      +...+..+.+-|-........+.||+...   +        ........|+.... +.......|.|.+++.+|+|.|+|
T Consensus        12 ~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~I~~~~~~Dsg~YyC   90 (115)
T d1lp9e1          12 TLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATL-HKSSSSFHLQKSSAQLSDSALYYC   90 (115)
T ss_dssp             EEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECC-BGGGTBCCEEESSCCGGGCEEEEE
T ss_pred             EECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeec-cCCCCeEEeeccccccccCccceE
Confidence            34566777777776644455677876531   0        00111233444321 122346779999999999999999


Q ss_pred             EEEE
Q psy534           76 KVVF   79 (145)
Q Consensus        76 ~~~~   79 (145)
                      .+..
T Consensus        91 a~~~   94 (115)
T d1lp9e1          91 ALFL   94 (115)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            7753

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.06  E-value=4.5e-06  Score=50.39  Aligned_cols=68  Identities=16%  Similarity=0.164  Sum_probs=41.0

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCC-----------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPT-----------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~-----------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      .+++.++.+-|-........+.||+...-           ........|+....   ...+.+|.|.+++.+|+|.|+|.
T Consensus        13 v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~---~~~~~~L~I~~~~~~Dsa~YyCa   89 (107)
T d1j1pl_          13 VTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG---SGTDFTLSINSVETEDFGMYFCQ   89 (107)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE---ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             ECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecc---cCCEEEEEEcccCcCCCEEEEEE
Confidence            45566666666554333344667655320           01122334555422   23478999999999999999996


Q ss_pred             EE
Q psy534           77 VV   78 (145)
Q Consensus        77 ~~   78 (145)
                      +.
T Consensus        90 ~~   91 (107)
T d1j1pl_          90 QA   91 (107)
T ss_dssp             EC
T ss_pred             cC
Confidence            53

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.8e-06  Score=51.45  Aligned_cols=30  Identities=30%  Similarity=0.334  Sum_probs=26.7

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC-----CcEEEE
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY-----PDLLVV  135 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g-----~~~~v~  135 (145)
                      .|.|.+++.+|+|.|+|.|.|..|     .+|.|.
T Consensus        69 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  103 (113)
T d2dava1          69 EMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH  103 (113)
T ss_dssp             EEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEE
T ss_pred             EEEEccCCHHHCeEEEEEEEeCCCEEEEEEEEEEE
Confidence            699999999999999999999999     566664

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.04  E-value=3.6e-06  Score=51.10  Aligned_cols=69  Identities=19%  Similarity=0.224  Sum_probs=44.0

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC---C--------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP---T--------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~--------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      +.+.+..+.+-|-........+.||+...   +        .......+|+....   ......|.|.+++.+|+|.|+|
T Consensus        12 ~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~---~~~~~~L~I~~~~~~DSa~YyC   88 (109)
T d1mqkl_          12 SASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG---SGTQFSLKINSLLPEDFGSYYC   88 (109)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCEEEEE
T ss_pred             EECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEec---cCCEEEEEEccccccCCeeEEE
Confidence            45567777778866544444577887531   1        01122334544321   2347889999999999999999


Q ss_pred             EEE
Q psy534           76 KVV   78 (145)
Q Consensus        76 ~~~   78 (145)
                      .+.
T Consensus        89 A~~   91 (109)
T d1mqkl_          89 QHH   91 (109)
T ss_dssp             EEC
T ss_pred             eee
Confidence            764

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.03  E-value=5.2e-06  Score=50.06  Aligned_cols=69  Identities=14%  Similarity=0.208  Sum_probs=44.1

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC---C--------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP---T--------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~--------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      ..+++..+.+-|-..+.....+.||+...   +        ........|+....   .....+|.|.+++.+|+|.|+|
T Consensus        12 ~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~l~~~DSa~YyC   88 (107)
T d1kcvl1          12 GMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSG---SATDFTLTISSVQADDDADYYC   88 (107)
T ss_dssp             EEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCEEEEE
T ss_pred             eECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeec---cCCeeecEEHhheecCCceEEE
Confidence            35567788888876654445688886532   0        00111234444321   2347889999999999999999


Q ss_pred             EEE
Q psy534           76 KVV   78 (145)
Q Consensus        76 ~~~   78 (145)
                      .+.
T Consensus        89 a~~   91 (107)
T d1kcvl1          89 GQS   91 (107)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            763

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=5.3e-06  Score=50.58  Aligned_cols=69  Identities=13%  Similarity=0.107  Sum_probs=41.1

Q ss_pred             HhhhccceeeEEeecC-CCccEEEEecCCC---C-------------c-ccccccceEEEecCCCCCCeeeEEEcccCCC
Q psy534            7 VKSIFQMLSVGDFADD-EDIPVYIWYDSYP---T-------------H-EAEEYKGRISRVDKESPFGMASLNLTKIRES   68 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g-~p~p~~~w~k~~~---~-------------~-~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~   68 (145)
                      +.+.+..+.+-|-..+ .....+.||+...   .             . .....+.|+....   .....+|.|++++.+
T Consensus        11 t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~---~~~~~~L~I~~l~~~   87 (114)
T d1akjd_          11 TWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKR---LGDTFVLTLSDFRRE   87 (114)
T ss_dssp             CCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEE---ETTEEEEEESSCCGG
T ss_pred             eccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEEC---CCCChhcEEccCCCC
Confidence            4556677777776553 2334466766431   0             0 0111234444322   133678999999999


Q ss_pred             CCEEEEEEEE
Q psy534           69 DQGWYECKVV   78 (145)
Q Consensus        69 D~G~Y~C~~~   78 (145)
                      |+|.|+|.+.
T Consensus        88 Dsg~YyCa~~   97 (114)
T d1akjd_          88 NEGYYFCSAL   97 (114)
T ss_dssp             GCEEEEEEEE
T ss_pred             CCEEEeEeEc
Confidence            9999999875

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.02  E-value=4.8e-06  Score=50.36  Aligned_cols=69  Identities=19%  Similarity=0.140  Sum_probs=42.4

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC--C---------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP--T---------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~--~---------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      +++.+..+.+-|-........+.||+...  .         ........|+....   ...+.+|.|++++.+|+|.|+|
T Consensus        12 ~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~l~~~Dsa~YyC   88 (107)
T d1c5cl1          12 SASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSR---SGSDYSLTISSLESEDFADYYC   88 (107)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE---ETTEEEEEESSCCGGGCSEEEE
T ss_pred             EECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecc---cCCEEEEEEhhhcccCCeEEEE
Confidence            35566777777766544444567776431  0         11122333443321   1337899999999999999999


Q ss_pred             EEE
Q psy534           76 KVV   78 (145)
Q Consensus        76 ~~~   78 (145)
                      .+.
T Consensus        89 a~~   91 (107)
T d1c5cl1          89 LQY   91 (107)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            753

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.01  E-value=7.6e-06  Score=49.26  Aligned_cols=68  Identities=19%  Similarity=0.227  Sum_probs=41.5

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC---C--------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP---T--------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~--------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      +.++..+.+-|-..+.....+.||+...   +        ........|+....+   ..+..|.|.+++.+|+|.|+|.
T Consensus        12 ~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~---~~~~~L~I~~~~~~Dsa~YyCa   88 (106)
T d1lk3l1          12 VSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGS---GTDFTLTIDPVEADDTAIYFCQ   88 (106)
T ss_dssp             ECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE---TTEEEEEESSCCGGGCEEEEEE
T ss_pred             ECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecC---CCEEEeEECCcChhhCCCcccc
Confidence            4456667777766544444567776532   1        011223445543221   3468899999999999999996


Q ss_pred             EE
Q psy534           77 VV   78 (145)
Q Consensus        77 ~~   78 (145)
                      ..
T Consensus        89 ~~   90 (106)
T d1lk3l1          89 QS   90 (106)
T ss_dssp             EC
T ss_pred             cc
Confidence            53

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.00  E-value=3.7e-06  Score=50.81  Aligned_cols=69  Identities=16%  Similarity=0.159  Sum_probs=43.2

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCC-----------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPT-----------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~-----------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      +.+++..+.+-|-........+.||+...-           ........|+....   ...+..|.|++++.+|+|.|+|
T Consensus        12 ~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~---~~~~~~L~I~~~~~~DsA~YyC   88 (107)
T d1mexl1          12 STSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSG---SGTDFTLTINNVQSEDLAEYFC   88 (107)
T ss_dssp             EECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE---ETTEEEEEESSCCGGGCSEEEE
T ss_pred             EECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecC---CCCeeeeeechhheecceeEEE
Confidence            356677777888655333345678865420           01122344554321   2347889999999999999999


Q ss_pred             EEE
Q psy534           76 KVV   78 (145)
Q Consensus        76 ~~~   78 (145)
                      .+.
T Consensus        89 a~~   91 (107)
T d1mexl1          89 QQY   91 (107)
T ss_dssp             EEC
T ss_pred             eEC
Confidence            753

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.99  E-value=8.4e-07  Score=54.72  Aligned_cols=40  Identities=38%  Similarity=0.568  Sum_probs=33.9

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC-----CcEEEEeCeeEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY-----PDLLVVLGSFHIHTG  144 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g-----~~~~v~~~~~~~~~~  144 (145)
                      .+|.|.+++.+|+|.|+|.+.+..+     .+|.|..+..-|+||
T Consensus        81 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~~~~p~  125 (126)
T d1pkoa_          81 VALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWINPG  125 (126)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECTTTTSSTT
T ss_pred             EEEEEEEEchhHCeEEEEEEEECCCEEEEEEEEEEeCCCEEeCCC
Confidence            4799999999999999999999876     677877765667776

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=4.3e-06  Score=49.14  Aligned_cols=30  Identities=27%  Similarity=0.382  Sum_probs=25.3

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC-CcEEE
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY-PDLLV  134 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g-~~~~v  134 (145)
                      ..|.|.++..+|+|.|+|.|.|..+ .++.|
T Consensus        62 ~~L~I~~~~~~D~G~Y~c~a~n~~~s~~l~V   92 (94)
T d1pd6a_          62 RTLTISQCSLADDAAYQCVVGGEKCSTELFV   92 (94)
T ss_dssp             EEEEECSCSSSSCEEEEEEETTEEECCEEEE
T ss_pred             EEeecCCCCceecEEEEEEEeeEEEEEEEEE
Confidence            4699999999999999999998765 55555

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=8.5e-06  Score=49.87  Aligned_cols=39  Identities=15%  Similarity=0.143  Sum_probs=27.6

Q ss_pred             cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           41 EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        41 ~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+|+.+..+ ......+|.|.+++.+|+|.|+|.+...
T Consensus        61 ~~~~~~~~~~~-~~~~~~~L~I~~l~~~DsavYyCa~~~~   99 (118)
T d1yjdc1          61 YSKTGFNCDGK-LGNESVTFYLQNLYVNQTDIYFCKIEVM   99 (118)
T ss_dssp             ECSSSCEEEEE-ECSSEEEEEEESCCGGGCEEEEEEEEEE
T ss_pred             ccCCcEEEEEE-CCCCeEEEEECCCCcccCeEEEEEEecc
Confidence            34455554321 2244678999999999999999987644

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=8.2e-06  Score=49.54  Aligned_cols=39  Identities=21%  Similarity=0.462  Sum_probs=30.2

Q ss_pred             cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      .+.+++|+.+.. +...+..+|.|.+++.+|+|.|+|...
T Consensus        54 ~~~~~gR~sis~-d~~~~~~~lti~~L~~eDsa~YyCa~~   92 (110)
T d1u9ka_          54 SEVHMGKFTLKH-DPSEAMLQVQMTDLQVTDSGLYRCVIY   92 (110)
T ss_dssp             EEEEETTEEEEE-EGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             chhhCcEEEEEE-ECCCCEEEEEECccccCCCEEEEEEEe
Confidence            345678888753 234456889999999999999999874

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.96  E-value=6.5e-06  Score=49.62  Aligned_cols=68  Identities=16%  Similarity=0.199  Sum_probs=41.6

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC---C--------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP---T--------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~--------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      .+++..+.+-|-..+.....+.||+...   +        ........|+....   ......|.|.+++.+|+|.|+|.
T Consensus        12 ~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~---~~~~~~L~I~~~~~~Dsa~YyCa   88 (106)
T d1op3k1          12 ASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSG---SGTEFTLTISGLQFDDFATYHCQ   88 (106)
T ss_dssp             ECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE---ETTEEEEEEESCCGGGCSEEEEE
T ss_pred             ECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeec---cCCEEEEEEccccccCCCcEeee
Confidence            4556667777765543344466776531   0        01122334554322   23467899999999999999997


Q ss_pred             EE
Q psy534           77 VV   78 (145)
Q Consensus        77 ~~   78 (145)
                      +.
T Consensus        89 ~~   90 (106)
T d1op3k1          89 HY   90 (106)
T ss_dssp             EE
T ss_pred             eC
Confidence            64

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=4.6e-06  Score=51.53  Aligned_cols=23  Identities=30%  Similarity=0.678  Sum_probs=20.6

Q ss_pred             CeeeEEEcccCCCCCEEEEEEEE
Q psy534           56 GMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        56 ~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+|.|.+++.+|+|.|+|.+.
T Consensus        80 ~~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          80 NKYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CEeEEEEcccccCCCEEEEeeEe
Confidence            35789999999999999999875

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.95  E-value=2.7e-06  Score=50.55  Aligned_cols=28  Identities=25%  Similarity=0.438  Sum_probs=24.9

Q ss_pred             cCCcEEEEcccCCCCCeeeEEEEecCCCC
Q psy534          102 NDGTELRISNIRSQDIGDYTCLATHVLYP  130 (145)
Q Consensus       102 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  130 (145)
                      .++ +|.|.+++.+|+|.|+|.+.+..|.
T Consensus        58 ~ng-SL~I~nl~~~DsG~Y~c~v~~~~g~   85 (98)
T d1hnga1          58 ANG-DLKIKNLTRDDSGTYNVTVYSTNGT   85 (98)
T ss_dssp             TTS-CEEESSCCGGGCEEEEEEEEETTCC
T ss_pred             CCc-cEEEeCCCHHHCEEEEEEEEeCCCC
Confidence            344 8999999999999999999998884

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.9e-06  Score=51.17  Aligned_cols=24  Identities=25%  Similarity=0.393  Sum_probs=23.3

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|+|.|+|..|
T Consensus        73 ~L~I~~v~~~D~G~Y~C~a~N~~G   96 (110)
T d2avga1          73 ELHITDAQPAFTGGYRCEVSTKDK   96 (110)
T ss_dssp             EEEEESCCTTCCEEEEEEEEETTE
T ss_pred             EEEEeccCHHHCcEEEEEEEECCC
Confidence            699999999999999999999998

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.95  E-value=1.5e-05  Score=48.49  Aligned_cols=24  Identities=25%  Similarity=0.253  Sum_probs=21.1

Q ss_pred             CCeeeEEEcccCCCCCEEEEEEEE
Q psy534           55 FGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        55 ~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ....+|.|++++.+|+|.|+|.+.
T Consensus        70 ~~~~~L~I~~~~~~Dsg~YyCa~~   93 (115)
T d1i9ea_          70 NSSFHLRKASVHWSDSAVYFCAVS   93 (115)
T ss_dssp             TTBCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEEecccccccccceeccccc
Confidence            346889999999999999999764

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.94  E-value=1.7e-05  Score=48.08  Aligned_cols=24  Identities=17%  Similarity=0.254  Sum_probs=21.4

Q ss_pred             CCeeeEEEcccCCCCCEEEEEEEE
Q psy534           55 FGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        55 ~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+.+|.|.+++.+|+|.|+|.+.
T Consensus        71 ~~~~~L~I~~~~~~Dsg~YyCa~~   94 (114)
T d2ak4d1          71 TSSFNFTITASQVVDSAVYFCALS   94 (114)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEEeecccccccCCCceEeCC
Confidence            457899999999999999999765

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.94  E-value=5.2e-06  Score=50.14  Aligned_cols=68  Identities=19%  Similarity=0.226  Sum_probs=41.8

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC--C---------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP--T---------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~--~---------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      +++.+..+.+-|-........+.||+...  .         ........|+....   .....+|.|++++.+|+|.|+|
T Consensus        12 ~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~---~~~~~~L~I~~~~~~Dsa~YyC   88 (107)
T d3cx5k1          12 AASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSG---SGTDYSLTISNLEPEDIATYFC   88 (107)
T ss_dssp             CBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEE---ETTEEEEECSCCCSCCCSEEEE
T ss_pred             EECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEc---cCCEEEEEEeEeeecCCCcEEe
Confidence            45667777777865544444567876532  0         01122223332211   1336899999999999999999


Q ss_pred             EE
Q psy534           76 KV   77 (145)
Q Consensus        76 ~~   77 (145)
                      ..
T Consensus        89 a~   90 (107)
T d3cx5k1          89 QH   90 (107)
T ss_dssp             EE
T ss_pred             ee
Confidence            65

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.94  E-value=1e-05  Score=48.92  Aligned_cols=68  Identities=16%  Similarity=0.237  Sum_probs=41.0

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC---C--------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP---T--------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~--------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      +..+..+.+-|-..+.....+.||+...   +        ........|+....   ...+.+|.|.+++.+|+|.|+|.
T Consensus        15 ~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~---~~~~~~L~I~~l~~~Dsa~YyCA   91 (109)
T d1bwwa_          15 ASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSG---SGTDYTFTISSLQPEDIATYYCQ   91 (109)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             ECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeC---CCCEeEEEEeeceeCcCceEEEe
Confidence            4556667777766544344466776432   0        01112334444321   13467899999999999999997


Q ss_pred             EE
Q psy534           77 VV   78 (145)
Q Consensus        77 ~~   78 (145)
                      +.
T Consensus        92 ~~   93 (109)
T d1bwwa_          92 QY   93 (109)
T ss_dssp             EC
T ss_pred             ec
Confidence            64

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=5.7e-07  Score=52.18  Aligned_cols=23  Identities=17%  Similarity=0.138  Sum_probs=20.4

Q ss_pred             EEEcccCCCCCeeeEEEEecCCC
Q psy534          107 LRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       107 L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      +.+.+++++|+|.|+|.|.|.+|
T Consensus        49 ~~~~~v~~~d~G~Y~C~A~N~~G   71 (84)
T d2oz4a3          49 GESVTVTRDLEGTYLCRARSTQG   71 (84)
T ss_dssp             TSCEECCGGGCEEEEEEEEETTE
T ss_pred             eeeeccccCCCCEEEEEEEcCCC
Confidence            35667889999999999999998

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.93  E-value=1.4e-05  Score=48.40  Aligned_cols=70  Identities=16%  Similarity=0.290  Sum_probs=42.0

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC---Cc--------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP---TH--------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~~--------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      .+.+..+.+-|-..+.....+.||+...   +.        ......+|+....+ ......+|.|++++.+|+|.|+|.
T Consensus        12 ~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~Dsa~YyCa   90 (111)
T d1bd2d1          12 VQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLN-KSAKHLSLHIVPSQPGDSAVYFCA   90 (111)
T ss_dssp             EETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEE-TTTTEEEEEESSCCGGGCEEEEEE
T ss_pred             EcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEE-ccCCEEEEEECCCcccccEEEEee
Confidence            3456666667755544444566765431   10        01122344443221 334589999999999999999997


Q ss_pred             EE
Q psy534           77 VV   78 (145)
Q Consensus        77 ~~   78 (145)
                      +.
T Consensus        91 ~~   92 (111)
T d1bd2d1          91 AM   92 (111)
T ss_dssp             EE
T ss_pred             cc
Confidence            65

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.92  E-value=1.2e-05  Score=48.49  Aligned_cols=69  Identities=17%  Similarity=0.219  Sum_probs=43.1

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCC-----------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPT-----------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~-----------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      +++.+..+.+-|-........+.||+...-           .......+|+....   ...+.+|.|.+++.+|+|.|+|
T Consensus        12 ~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~---~~~~~~L~I~~~~~~Dsa~YyC   88 (107)
T d1d5il1          12 YASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSG---SGQDYSLTISSLEYEDMGIYYC   88 (107)
T ss_dssp             EECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE---ETTEEEEEESSCCGGGCEEEEE
T ss_pred             EECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecc---cCCEEEccccccCCcCCEEEEe
Confidence            345677777778665444455678765320           01122334554322   1346889999999999999999


Q ss_pred             EEE
Q psy534           76 KVV   78 (145)
Q Consensus        76 ~~~   78 (145)
                      ...
T Consensus        89 a~~   91 (107)
T d1d5il1          89 LQY   91 (107)
T ss_dssp             EEC
T ss_pred             eec
Confidence            753

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.91  E-value=1.7e-06  Score=51.06  Aligned_cols=27  Identities=26%  Similarity=0.514  Sum_probs=23.9

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+..|.|..+..+|+|.|+|.|.|.+|
T Consensus        60 ~~~~l~i~~~~~~d~G~Y~C~a~N~~G   86 (97)
T d1cs6a1          60 AGDLVISNPVKAKDAGSYQCVATNARG   86 (97)
T ss_dssp             TTEEEEESCCHHHHCEEEEEEEEETTE
T ss_pred             eeeEEEEecccccCCEEEEEEEEECCC
Confidence            445788888999999999999999998

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=4.8e-06  Score=50.26  Aligned_cols=25  Identities=32%  Similarity=0.329  Sum_probs=22.2

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+|.|.+++.+|+|.|+|.+.+.-+
T Consensus        71 gSL~I~~v~~~D~G~Y~c~v~~~~~   95 (107)
T d1l6za1          71 GSLLFQMITMKDMGVYTLDMTDENY   95 (107)
T ss_dssp             SCEEECSCCGGGCEEEEEEEEETTE
T ss_pred             ccEEEcCCCchhCEEEEEEEEECCC
Confidence            4899999999999999999987643

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.90  E-value=6.3e-06  Score=50.22  Aligned_cols=25  Identities=20%  Similarity=0.424  Sum_probs=21.7

Q ss_pred             CCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           54 PFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        54 ~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      .....+|.|.+++.+|+|.|+|.+.
T Consensus        75 ~~~~~~L~I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          75 DSRRPFLSIMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             TSSSCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCeEEEeecccCCCCCcEEEEeEc
Confidence            3457789999999999999999874

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.89  E-value=1.1e-05  Score=49.03  Aligned_cols=72  Identities=19%  Similarity=0.335  Sum_probs=47.0

Q ss_pred             HhhhccceeeEEeecCC--CccEEEEecCCC---CcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDE--DIPVYIWYDSYP---THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~--p~p~~~w~k~~~---~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ++..+..+.+-|-..+.  +...+.||+...   +..-....+|....-+ ......+|.|.+++.+|+|.|+|.+..
T Consensus        11 ~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~l~~~Dsa~YyCa~~~   87 (113)
T d1vesa_          11 TKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVN-KGSKSFSLRISDLRVEDSGTYKCQAFY   87 (113)
T ss_dssp             EECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeE-CCCCceeeeecccccCCcceEeeeeec
Confidence            45677888999987643  445688997532   1111123445443211 223467899999999999999998854

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.88  E-value=2.3e-05  Score=47.36  Aligned_cols=24  Identities=29%  Similarity=0.317  Sum_probs=21.6

Q ss_pred             CCeeeEEEcccCCCCCEEEEEEEE
Q psy534           55 FGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        55 ~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ....+|.|.+++.+|+|.|+|.+.
T Consensus        66 ~~~~~L~I~~~~~~Dsa~YyCa~~   89 (110)
T d2esvd1          66 RKSSTLILPHATLRDTAVYYCIVV   89 (110)
T ss_dssp             CSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCeeeehhcccccCCceEEEEEEe
Confidence            457889999999999999999875

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.88  E-value=1.2e-05  Score=48.46  Aligned_cols=68  Identities=18%  Similarity=0.254  Sum_probs=40.2

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC---C--------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP---T--------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~--------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      ++.+..+.+-|-........+.||+...   +        ........|+....   .....+|.|.+++.+|+|.|+|.
T Consensus        13 ~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~l~~~DsA~YyCa   89 (107)
T d1tjgl1          13 ASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSG---SGTEFTLTISTLRPEDFATYYCQ   89 (107)
T ss_dssp             ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE---ETTEEEEEESSCCGGGCSEEEEE
T ss_pred             ECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEec---cCCEEEEEeccceeCcCceEEEE
Confidence            4456666667765533334556665431   0        00112233444321   23478899999999999999996


Q ss_pred             EE
Q psy534           77 VV   78 (145)
Q Consensus        77 ~~   78 (145)
                      ..
T Consensus        90 ~~   91 (107)
T d1tjgl1          90 QL   91 (107)
T ss_dssp             EC
T ss_pred             EC
Confidence            53

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.87  E-value=1.1e-05  Score=48.52  Aligned_cols=70  Identities=14%  Similarity=0.227  Sum_probs=42.1

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCC---Cc--------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYP---TH--------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~~--------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      +..+..+.+-|-..+.....+.||+...   +.        .......|...... ......+|.|.+++.+|+|.|+|.
T Consensus        11 ~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~Dsa~YyCa   89 (110)
T d1u3ha1          11 VWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFN-KREKKLSLHIADSQPGDSATYFCA   89 (110)
T ss_dssp             EETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEE-TGGGEEEEEESSCCTTSCSEEEEC
T ss_pred             EcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEEC-CCCCeeEeEeccCCCCCceeEeee
Confidence            4566777777766654455677876531   10        00111223332211 123467899999999999999997


Q ss_pred             EE
Q psy534           77 VV   78 (145)
Q Consensus        77 ~~   78 (145)
                      +.
T Consensus        90 ~~   91 (110)
T d1u3ha1          90 AS   91 (110)
T ss_dssp             CE
T ss_pred             ec
Confidence            75

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.86  E-value=1.5e-05  Score=48.09  Aligned_cols=69  Identities=17%  Similarity=0.207  Sum_probs=41.4

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCC-----------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPT-----------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~-----------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      +++.+..+.+-|-..+.....+.||+...-           ........+.....   .....+|.|.+++.+|+|.|+|
T Consensus        12 ~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~l~~~Dsa~YyC   88 (108)
T d1jhll_          12 VASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG---SGTDFTLTISSLEPEDFAMYIC   88 (108)
T ss_dssp             EECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---SSSEEEEEECSCCTTCCSEEEE
T ss_pred             EecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccC---CCCEEEeEeeeeEeccceEEEE
Confidence            455677777777665444445777765421           00111222332211   2346789999999999999999


Q ss_pred             EEE
Q psy534           76 KVV   78 (145)
Q Consensus        76 ~~~   78 (145)
                      ...
T Consensus        89 A~~   91 (108)
T d1jhll_          89 QQH   91 (108)
T ss_dssp             EEC
T ss_pred             eeC
Confidence            653

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.86  E-value=9.4e-06  Score=48.54  Aligned_cols=23  Identities=17%  Similarity=0.432  Sum_probs=20.6

Q ss_pred             CeeeEEEcccCCCCCEEEEEEEE
Q psy534           56 GMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        56 ~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ....|.|.+++.+|+|.|+|.+.
T Consensus        66 ~~~~L~I~~l~~~Dsa~YyCA~~   88 (103)
T d8faba1          66 TTVTLTISGVQAEDEADYYCQAW   88 (103)
T ss_dssp             TEEEEEETTCCGGGCEEEEEEEE
T ss_pred             CccCceEcCcchhHCceEEeeec
Confidence            46889999999999999999764

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.85  E-value=2.6e-05  Score=47.92  Aligned_cols=38  Identities=13%  Similarity=0.271  Sum_probs=27.3

Q ss_pred             ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           40 EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        40 ~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+.+|+.+.. +.......|.|.+++.+|+|.|+|...
T Consensus        62 ~~~~~r~~~s~-~~~~~~~~L~I~~l~~~Dsa~YyCA~~   99 (120)
T d1ypzf1          62 DKEYKKMEASK-NPSASTSILTIYSLEEEDEAIYYCSYG   99 (120)
T ss_dssp             ESSSSEEEEEE-CCTTTEEEEEECSCCGGGCSEEEEEEC
T ss_pred             ecccccccccc-ccccccccccccccccccceeEEEEEc
Confidence            34556765532 233446789999999999999999653

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.83  E-value=1.9e-05  Score=48.37  Aligned_cols=70  Identities=17%  Similarity=0.355  Sum_probs=42.2

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC---------------Cccccc-ccceEEEecCCCCCCeeeEEEcccCCCCC
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP---------------THEAEE-YKGRISRVDKESPFGMASLNLTKIRESDQ   70 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---------------~~~~~~-~~~R~~~~~~~~~~~~~sL~I~~v~~~D~   70 (145)
                      ++..+..+.+-|-..+.....+.||+...               ...... ...|+....  .......|.|.+++.+|+
T Consensus        12 ~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~~L~i~~~~~~Ds   89 (118)
T d2ij0c1          12 IVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINH--ASPTLSTLTVTSAHPEDS   89 (118)
T ss_dssp             EECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEE--CSSSEEEEEECSCCGGGC
T ss_pred             EEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeec--cccccccccccccccccC
Confidence            34556666777765554445666776431               111111 234444321  123457899999999999


Q ss_pred             EEEEEEEE
Q psy534           71 GWYECKVV   78 (145)
Q Consensus        71 G~Y~C~~~   78 (145)
                      |.|+|.+.
T Consensus        90 a~YyCa~~   97 (118)
T d2ij0c1          90 GFYVCSAL   97 (118)
T ss_dssp             EEEEEEEE
T ss_pred             ceEEEEEe
Confidence            99999875

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.83  E-value=2.8e-05  Score=47.25  Aligned_cols=23  Identities=26%  Similarity=0.229  Sum_probs=20.7

Q ss_pred             CeeeEEEcccCCCCCEEEEEEEE
Q psy534           56 GMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        56 ~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ....|.|.+++.+|+|.|+|.+.
T Consensus        71 ~~~~L~I~~~~~~Dsa~YyCa~~   93 (115)
T d1j8hd1          71 TSFHLTKPSAHMSDAAEYFCAVS   93 (115)
T ss_dssp             TBCCEEESSCCGGGCEEEEEEEE
T ss_pred             CEEEEeeccccccCCccceeeec
Confidence            35679999999999999999886

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.82  E-value=2.4e-05  Score=47.35  Aligned_cols=24  Identities=17%  Similarity=0.410  Sum_probs=21.0

Q ss_pred             CCeeeEEEcccCCCCCEEEEEEEE
Q psy534           55 FGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        55 ~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ....+|.|.+++.+|+|.|+|.+.
T Consensus        70 ~~~~~L~I~~~~~~Dsa~YyCa~~   93 (112)
T d1kgce1          70 GSVSTLKIQRTQQEDSAVYLCASS   93 (112)
T ss_dssp             SSCEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEECCCCcCCCEEEEEeee
Confidence            346789999999999999999774

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.7e-05  Score=45.63  Aligned_cols=24  Identities=8%  Similarity=0.052  Sum_probs=20.6

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+.|.....+|+|.|+|.|.|..|
T Consensus        50 ~~~l~~~~~~d~G~Y~C~A~N~~G   73 (85)
T d1rhfa2          50 PSVLNVTGVTQSTMFSCEAHNLKG   73 (85)
T ss_dssp             SEEEEECCCSSCEEEEEEEEETTE
T ss_pred             ceEEecCCccccEEEEEEEEcCCC
Confidence            456666777899999999999998

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=4.4e-06  Score=48.78  Aligned_cols=25  Identities=24%  Similarity=0.274  Sum_probs=23.2

Q ss_pred             cEEEEcccCCCCCe-eeEEEEecCCC
Q psy534          105 TELRISNIRSQDIG-DYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G-~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|.| .|+|.|.|.+|
T Consensus        56 ~~L~i~~~~~~d~G~~Y~C~a~N~~G   81 (92)
T d2ifga1          56 LGLTLANVTSDLNRKNVTCWAENDVG   81 (92)
T ss_dssp             EEEEEESCCSTTTTCCEEECCEETTE
T ss_pred             eeEEEccccccccceEEEEEEEcCCC
Confidence            47999999999999 69999999998

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.80  E-value=3.5e-05  Score=46.75  Aligned_cols=72  Identities=21%  Similarity=0.279  Sum_probs=44.9

Q ss_pred             HhhhccceeeEEeecCC--CccEEEEecCCC---CcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            7 VKSIFQMLSVGDFADDE--DIPVYIWYDSYP---THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~--p~p~~~w~k~~~---~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ++..+..+.+-|-..+.  ....+.||+...   +..-....+|+....+ ......+|.|++++.+|+|.|+|.+..
T Consensus        10 t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~-~~~~~~~L~I~~l~~~Dsa~YyCA~~~   86 (112)
T d1sq2n_          10 TKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVN-SGSKSFSLRINDLTVEDGGTYRCGLGV   86 (112)
T ss_dssp             EECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEECB
T ss_pred             EEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEe-cCCceeeeEecCCcCccCEEEeEEEec
Confidence            34566778888866532  345678997531   1111112344443211 223467899999999999999998753

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.80  E-value=4.1e-05  Score=46.38  Aligned_cols=36  Identities=22%  Similarity=0.211  Sum_probs=25.7

Q ss_pred             ccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           42 YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        42 ~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+|+.+..+ ......+|.|.+++.+|+|.|+|.+.
T Consensus        58 ~~~~~~~~~~-~~~~~~~L~I~~~~~~Dsa~YyCa~~   93 (115)
T d1fo0a_          58 TVGHYSLNFQ-KPKSSIGLIITATQIEDSAVYFCAMR   93 (115)
T ss_dssp             EETTEEEEEE-GGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCCceEEEEe-ccCCEEEEEECCCCccccccccceee
Confidence            3345544321 12346789999999999999999875

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=6.1e-06  Score=49.34  Aligned_cols=24  Identities=33%  Similarity=0.411  Sum_probs=22.9

Q ss_pred             EEEEcccCCCCCe-eeEEEEecCCC
Q psy534          106 ELRISNIRSQDIG-DYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G-~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|.| .|+|.|+|.+|
T Consensus        71 ~L~I~~v~~~D~g~~Y~C~A~N~~G   95 (107)
T d1iray3          71 VLNISEIESRFYKHPFTCFAKNTHG   95 (107)
T ss_dssp             EEEESSCCGGGGSSCEEEEEECSSC
T ss_pred             EEEEeecchHHCCcEEEEEEEeCCC
Confidence            7999999999999 59999999999

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.79  E-value=1.4e-05  Score=48.32  Aligned_cols=68  Identities=19%  Similarity=0.271  Sum_probs=39.9

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCC-----------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPT-----------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~-----------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      ..++.++.+-|-........+.||+...-           ........|+....   .....+|.|.+++.+|+|.|+|.
T Consensus        12 ~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~l~~~DsavYyCA   88 (109)
T d1w72l1          12 VAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSN---SGNMATLTISRVEAGDEADYYCQ   88 (109)
T ss_dssp             ECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE---ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             ECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeec---CCCccceEEeeeccCCCEEEEEE
Confidence            34566666666544322334566654310           11122334443322   13478899999999999999998


Q ss_pred             EE
Q psy534           77 VV   78 (145)
Q Consensus        77 ~~   78 (145)
                      +.
T Consensus        89 ~~   90 (109)
T d1w72l1          89 VW   90 (109)
T ss_dssp             EE
T ss_pred             ec
Confidence            75

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.78  E-value=0.00014  Score=43.80  Aligned_cols=24  Identities=25%  Similarity=0.281  Sum_probs=21.2

Q ss_pred             CCeeeEEEcccCCCCCEEEEEEEE
Q psy534           55 FGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        55 ~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ....+|.|.+++.+|+|.|+|.+.
T Consensus        68 ~~~~~L~i~~~~~~Dsa~YyCA~~   91 (112)
T d2cdeb1          68 TEHFPLTLESARPSHTSQYLCASS   91 (112)
T ss_dssp             SSBCCEEBSSCCTTTCSEEEEEEE
T ss_pred             CCceEeeeccccccccccEEEEEe
Confidence            346889999999999999999775

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=9.2e-06  Score=48.68  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=23.3

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|+|.|.|..|
T Consensus        58 ~~L~I~~v~~~D~G~Y~C~a~n~~~   82 (103)
T d1iray2          58 DRLIVMNVAEKHRGNYTCHASYTYL   82 (103)
T ss_dssp             TEEEESSCCGGGCEEEEEEEEEEET
T ss_pred             CEEEEcccccccCcEEEEEEEECcC
Confidence            4899999999999999999999876

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=3.1e-06  Score=50.68  Aligned_cols=24  Identities=29%  Similarity=0.358  Sum_probs=23.3

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|+|.|+|.+|
T Consensus        63 ~L~i~~~~~~D~G~Y~C~a~N~~G   86 (103)
T d1wwbx_          63 CLQLDNPTHMNNGDYTLIAKNEYG   86 (103)
T ss_dssp             EEEEESCCGGGCEEEEEEEECSSC
T ss_pred             EEEECCCCHHhCceEEEEEeccCC
Confidence            699999999999999999999999

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.77  E-value=1.8e-05  Score=47.89  Aligned_cols=25  Identities=20%  Similarity=0.462  Sum_probs=22.6

Q ss_pred             cEEEEcccCCCCCe---eeEEEEecCCC
Q psy534          105 TELRISNIRSQDIG---DYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G---~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|   .|+|.|+|.+|
T Consensus        63 ~~L~i~~v~~~D~gd~g~Y~C~A~N~~g   90 (111)
T d1biha2          63 GNLYFTIVTKEDVSDIYKYVCTAKNAAV   90 (111)
T ss_dssp             SCEEEEEECGGGCCSSEEEEEEEECTTC
T ss_pred             cccEEeeeEeeccCCceEEEEEEEeCCC
Confidence            48999999998887   59999999998

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=97.77  E-value=3.6e-06  Score=49.04  Aligned_cols=30  Identities=20%  Similarity=0.159  Sum_probs=25.4

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC-CcEEE
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY-PDLLV  134 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g-~~~~v  134 (145)
                      ..|.|.+++.+|+|.|+|.|.|..+ ..+.|
T Consensus        56 ~~L~I~~~~~~D~G~Y~c~a~n~~~sa~l~V   86 (89)
T d1tiua_          56 HILILHNCQLGMTGEVSFQAANAKSAANLKV   86 (89)
T ss_dssp             EEEECCSCCSCCCSEECCBCSSCBCCEEEEE
T ss_pred             EEEEEcCCChhcCEEEEEEECceEEEEEEEE
Confidence            4799999999999999999999776 55544

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.77  E-value=6.9e-05  Score=45.37  Aligned_cols=24  Identities=17%  Similarity=0.304  Sum_probs=20.8

Q ss_pred             CCeeeEEEcccCCCCCEEEEEEEE
Q psy534           55 FGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        55 ~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ....+|.|++++.+|+|.|+|.+.
T Consensus        69 ~~~~~L~I~~~~~~DSa~YyCa~~   92 (114)
T d1ogae1          69 KESFPLTVTSAQKNPTAFYLCASS   92 (114)
T ss_dssp             TTBCCEEECSCCSCCCEEEEEEEE
T ss_pred             CCeEEEEECcCCcCCceeEEEeec
Confidence            346789999999999999999664

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.76  E-value=5e-05  Score=45.88  Aligned_cols=25  Identities=16%  Similarity=0.381  Sum_probs=21.5

Q ss_pred             CCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           55 FGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        55 ~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ....+|.|.+++.+|+|.|+|.+..
T Consensus        69 ~~~~~L~I~~~~~~Dsa~YyCA~~~   93 (113)
T d2ntsp1          69 NSRSEMNVSTLELGDSALYLCASSL   93 (113)
T ss_dssp             TSCEEEEECSCCGGGCEEEEEEEES
T ss_pred             CCeeEEEECCCCcccceeeeeeeeC
Confidence            3467899999999999999997753

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.76  E-value=5.2e-05  Score=46.09  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=22.0

Q ss_pred             CCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           54 PFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        54 ~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      .....+|.|++++.+|+|.|+|.+.
T Consensus        67 ~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (115)
T d1ogad1          67 ARKDSSLHITAAQPGDTGLYLCAGA   91 (115)
T ss_dssp             TSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             ccceeeeeecCCCccceeeEccccc
Confidence            3458899999999999999999764

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.75  E-value=3.5e-05  Score=46.46  Aligned_cols=23  Identities=26%  Similarity=0.196  Sum_probs=20.7

Q ss_pred             CeeeEEEcccCCCCCEEEEEEEE
Q psy534           56 GMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        56 ~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+|.|.+++.+|+|.|+|.+.
T Consensus        72 ~~~~L~I~~~~~~Dsa~YyCa~~   94 (110)
T d2aq2a1          72 EQFSLILESATPSQTSVYFCASG   94 (110)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CEEEEEECCCCHhhCEEEEEeeC
Confidence            46889999999999999999775

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.75  E-value=4.3e-05  Score=46.54  Aligned_cols=40  Identities=18%  Similarity=0.241  Sum_probs=30.7

Q ss_pred             cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           37 HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        37 ~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..++.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        58 ~y~~s~kgRftiS~D-~s~n~~~L~~~sL~~eDtAvYYCAr   97 (117)
T d1c5db1          58 YYNSALKSRLSINRD-TSKSQVFLKMNSLQTEDTAIYFCTR   97 (117)
T ss_dssp             EECTTTSSSEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccccccccceEEecc-cccceeeccccccccCcceEEEEec
Confidence            345678899988643 2334577999999999999999953

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.74  E-value=1.8e-05  Score=47.94  Aligned_cols=68  Identities=18%  Similarity=0.273  Sum_probs=39.8

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCC---C--------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEE
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYP---T--------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE   74 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~---~--------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   74 (145)
                      .+++..+.+-|-..+..  ...+.||+...   .        .......+|+....   .....+|.|++++.+|+|.|+
T Consensus        12 v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~---~~~~~~L~I~~~~~~Dsa~Yy   88 (111)
T d1rzfl1          12 AAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSK---SGTSATLGITGLQTGDEADYY   88 (111)
T ss_dssp             ECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE---ETTEEEEEESSCCGGGCSEEE
T ss_pred             eCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeC---CCCEeeeEEeeeccccCcceE
Confidence            34555666666544321  23356664421   0        01122345554422   134689999999999999999


Q ss_pred             EEEE
Q psy534           75 CKVV   78 (145)
Q Consensus        75 C~~~   78 (145)
                      |.+.
T Consensus        89 CA~~   92 (111)
T d1rzfl1          89 CGTW   92 (111)
T ss_dssp             EEEE
T ss_pred             Eeec
Confidence            9775

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.72  E-value=2e-05  Score=48.45  Aligned_cols=69  Identities=13%  Similarity=0.120  Sum_probs=41.2

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC---C--------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP---T--------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~--------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      +++.+..+.+-|-..+.....+.||+...   +        ........|+....   ......|.|.+++.+|+|.|+|
T Consensus        12 ~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~---~~~~~~L~I~~~~~~DsavYyC   88 (119)
T d1f3rb2          12 SASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG---SGTDYTLTISSLQPEDVATYFC   88 (119)
T ss_dssp             CCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---EBTEEEEEECSCCGGGCSEEEE
T ss_pred             EECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccC---CCCEEEEEcccCccCCCeEEEe
Confidence            45566777777765544344567776532   0        00111233433211   1335789999999999999999


Q ss_pred             EEE
Q psy534           76 KVV   78 (145)
Q Consensus        76 ~~~   78 (145)
                      ...
T Consensus        89 a~~   91 (119)
T d1f3rb2          89 YQY   91 (119)
T ss_dssp             EEE
T ss_pred             ecc
Confidence            754

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.71  E-value=4.4e-05  Score=46.88  Aligned_cols=38  Identities=18%  Similarity=0.289  Sum_probs=28.7

Q ss_pred             cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      .+.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        62 ~~~~~gRft~s~d-~s~~~~~L~i~~l~~eDsAvYyCAr   99 (120)
T d2agjh1          62 NPSLQSRLTITKD-ASKKQVVLTLTNLDPVDTATYYCAR   99 (120)
T ss_dssp             CGGGCSSEEEECC-TTTTEEEEEEESCCGGGCEEEEEEE
T ss_pred             chhhccccceecc-cccceeeeeEEeeeeccceEEeeEe
Confidence            3446788876533 2334678999999999999999964

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.70  E-value=3.2e-05  Score=46.86  Aligned_cols=24  Identities=21%  Similarity=0.372  Sum_probs=21.0

Q ss_pred             CCeeeEEEcccCCCCCEEEEEEEE
Q psy534           55 FGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        55 ~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ....+|.|.+++.+|+|.|+|.+.
T Consensus        68 ~~~~~L~I~~~~~~Dsa~YyCa~~   91 (113)
T d1h5ba_          68 ARYSTLHIRDAQLEDSGTYFCAAE   91 (113)
T ss_dssp             SSEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CceeEEEECCCCHhHCEEEEEEec
Confidence            346789999999999999999875

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.1e-05  Score=48.14  Aligned_cols=25  Identities=12%  Similarity=0.166  Sum_probs=22.4

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|..+..+|.|.|+|+|+|.+|
T Consensus        60 s~l~i~~~~~dd~g~ytC~A~n~~g   84 (103)
T d1iama1          60 VTTTVLVRRDHHGAQFSCRTELDLR   84 (103)
T ss_dssp             EEEEEECCSSCSSCEEEEEEEEECG
T ss_pred             EEEEEeeehhHCCCEEEEEEEeCCC
Confidence            3688898899999999999999987

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.69  E-value=7.4e-05  Score=46.20  Aligned_cols=61  Identities=15%  Similarity=0.146  Sum_probs=38.1

Q ss_pred             EEeec---CCCccEEEE-ecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           17 GDFAD---DEDIPVYIW-YDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        17 ~~w~~---g~p~p~~~w-~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      +.|.|   |....-+.+ +.++.....+.+++|+.+.-+ .......|+|++++.+|++.|+|...
T Consensus        36 ~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d-~s~~t~~L~i~~l~~eDtAvYyCAr~  100 (126)
T d1etzb1          36 VGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKD-TSSNQVFLKITSVDTSDTATYHCARR  100 (126)
T ss_dssp             EEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecc-cCCcEEEcceecccccccceEEEEEe
Confidence            34765   443333333 222323334567889987543 22335779999999999999999753

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.68  E-value=6.6e-05  Score=45.43  Aligned_cols=33  Identities=21%  Similarity=0.327  Sum_probs=24.3

Q ss_pred             ccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           42 YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        42 ~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ...|+....   ......|.|++++.+|+|.|+|..
T Consensus        63 ~~~r~~~~~---s~~~~~L~Is~~~~~DsAvYyCa~   95 (112)
T d1mjul1          63 VPDRFSGSG---SGTAFTLRISRVEAEDVGVYYCLQ   95 (112)
T ss_dssp             SCTTEEEEE---CSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCcEEeec---CCCEEEEEECCccccCCceEEEEe
Confidence            445554422   234788999999999999999953

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=9.2e-06  Score=49.32  Aligned_cols=36  Identities=22%  Similarity=0.238  Sum_probs=28.0

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCC-C----CcEEEEeCeeE
Q psy534          105 TELRISNIRSQDIGDYTCLATHVL-Y----PDLLVVLGSFH  140 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~-g----~~~~v~~~~~~  140 (145)
                      .+|.|.+++.+|+|.|.|.+...- +    +.|.|+.+..+
T Consensus        74 ~sL~I~~l~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~~~~  114 (116)
T d1xeda_          74 FVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVLEHHHH  114 (116)
T ss_dssp             EEEEECSCCGGGCEEEEEEESCGGGCCEEEEEEEEECCCCC
T ss_pred             EEEEEhhhCcCCCEEEEEEEEcCCCCceEeEEEEEECCCcc
Confidence            379999999999999999886543 2    67777766544

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=8e-06  Score=48.79  Aligned_cols=24  Identities=25%  Similarity=0.258  Sum_probs=23.2

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|+|.|+|..|
T Consensus        63 ~L~i~~~~~~D~G~Y~C~a~N~~G   86 (105)
T d1wwca_          63 CLLFNKPTHYNNGNYTLIAKNPLG   86 (105)
T ss_dssp             EEEEESCCGGGCEEEEEEEEETTE
T ss_pred             EEEEeecccccceEEEEEEEcCCC
Confidence            699999999999999999999999

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.66  E-value=0.0001  Score=44.41  Aligned_cols=24  Identities=17%  Similarity=0.225  Sum_probs=21.3

Q ss_pred             CCeeeEEEcccCCCCCEEEEEEEE
Q psy534           55 FGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        55 ~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+.+|.|++++.+|+|.|+|.+.
T Consensus        72 ~~~~~L~I~~~~~~Dsa~YyCa~~   95 (111)
T d1j05a_          72 RTDFTLIIDPVEADDVATYYCQQT   95 (111)
T ss_dssp             SSEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCEEEEEEcccccccCccEEEeec
Confidence            457899999999999999999764

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.66  E-value=2.9e-05  Score=46.71  Aligned_cols=23  Identities=17%  Similarity=0.364  Sum_probs=20.4

Q ss_pred             CeeeEEEcccCCCCCEEEEEEEE
Q psy534           56 GMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        56 ~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ....|.|++++.+|+|.|+|.+.
T Consensus        70 ~~~~L~I~~~~~~Dsa~YyCa~~   92 (108)
T d2fx7l1          70 TDFTLTISRLEPEDFAVYYCQQY   92 (108)
T ss_dssp             TEEEEEESSCCGGGCSEEEEEEC
T ss_pred             CEEEEEehHheecccEEEeeecC
Confidence            46789999999999999999763

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.65  E-value=8.5e-05  Score=44.86  Aligned_cols=24  Identities=21%  Similarity=0.189  Sum_probs=21.0

Q ss_pred             CCeeeEEEcccCCCCCEEEEEEEE
Q psy534           55 FGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        55 ~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      .....|.|.+++.+|+|.|+|.+.
T Consensus        70 ~~~~~L~i~~~~~~Dsa~YyCa~~   93 (113)
T d1j8he1          70 KERFSLILESASTNQTSMYLCASS   93 (113)
T ss_dssp             TTBCEEEESSCCGGGCEEEEEEEE
T ss_pred             CcEeeeEeccCccCCcccEEeeEc
Confidence            346789999999999999999875

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.65  E-value=2.9e-05  Score=47.05  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=20.4

Q ss_pred             CeeeEEEcccCCCCCEEEEEEEE
Q psy534           56 GMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        56 ~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      .+.+|.|++++.+|+|.|+|.+.
T Consensus        73 ~~~~L~I~~~~~~DsA~YyCa~~   95 (111)
T d2gsia1          73 TDFTLNIHPVEEEDAATYYCSHI   95 (111)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CchhcccccccccCCceEEEEEC
Confidence            47889999999999999999653

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.64  E-value=3.7e-05  Score=46.43  Aligned_cols=70  Identities=17%  Similarity=0.293  Sum_probs=42.7

Q ss_pred             hhhccceeeEEeecCCCc--cEEEEecCCC-----------CcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEE
Q psy534            8 KSIFQMLSVGDFADDEDI--PVYIWYDSYP-----------THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE   74 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~--p~~~w~k~~~-----------~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   74 (145)
                      ++++..+.+-|-..+...  .-+.||+...           ......+.+|+....+ .......|.|++++.+|+|.|+
T Consensus        12 v~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~l~~~Dsa~Yy   90 (111)
T d1cd0a_          12 ESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSID-RSSNSASLTISGLKTEDEADYY   90 (111)
T ss_dssp             ECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE-TTTTEEEEEECSCCGGGCEEEE
T ss_pred             ECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeec-CCCCccccccccCCcccCcEEE
Confidence            456667777776554322  2356766432           0111234556554322 2344789999999999999999


Q ss_pred             EEEE
Q psy534           75 CKVV   78 (145)
Q Consensus        75 C~~~   78 (145)
                      |...
T Consensus        91 CA~~   94 (111)
T d1cd0a_          91 CQSY   94 (111)
T ss_dssp             EEEE
T ss_pred             Eeec
Confidence            9764

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.63  E-value=4.5e-05  Score=45.96  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=21.1

Q ss_pred             CCeeeEEEcccCCCCCEEEEEEEE
Q psy534           55 FGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        55 ~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      .....|.|++++.+|+|.|+|.+.
T Consensus        69 ~~~~~L~i~~~~~~Dsa~YyCA~~   92 (110)
T d1ac6a_          69 ATSFHLQKASVQESDSAVYYCALS   92 (110)
T ss_dssp             TTBCCEEEEEECGGGCEEEEEEEE
T ss_pred             CCEEeeeecCcCcCCCcccceeec
Confidence            347889999999999999999775

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.63  E-value=4.3e-05  Score=46.32  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=19.7

Q ss_pred             CeeeEEEcccCCCCCEEEEEEE
Q psy534           56 GMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        56 ~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      .+..|.|++++.+|+|.|+|..
T Consensus        74 ~~~~L~I~~~~~eDsAvYYC~~   95 (112)
T d1ncwl1          74 TDFTLKISRVEAEDLGVYYCWQ   95 (112)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEE
T ss_pred             CEEEEEECccccCcCEeEEEEc
Confidence            4688999999999999999954

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.63  E-value=0.00011  Score=44.99  Aligned_cols=37  Identities=22%  Similarity=0.340  Sum_probs=28.7

Q ss_pred             cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEE
Q psy534           39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECK   76 (145)
Q Consensus        39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   76 (145)
                      .+.+++|+.+..+ .......|+|.+++.+|++.|+|.
T Consensus        60 ~~~~kgRftiS~D-~s~nt~~L~i~~l~~eDtA~YYCA   96 (120)
T d1dn0b1          60 NPSLKSRVTISVD-TSKNQFSLKLSSVTAADTAVYYCA   96 (120)
T ss_dssp             CTTTTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             ccceeeeeEEecc-CchheecccccccccccccEEEEE
Confidence            4567899987643 233356799999999999999994

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.63  E-value=0.00011  Score=44.48  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=20.4

Q ss_pred             CCeeeEEEcccCCCCCEEEEEEE
Q psy534           55 FGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        55 ~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..+.+|.|.+++.+|+|.|+|..
T Consensus        74 ~~~~~L~I~~~~~~DsavYyCa~   96 (113)
T d1n4xl_          74 GTDFTLKISRVEAEDLGIYYCFQ   96 (113)
T ss_dssp             SSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCcccCccCCCCcccCEEEEEEE
Confidence            34789999999999999999954

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.62  E-value=0.00013  Score=44.54  Aligned_cols=40  Identities=20%  Similarity=0.347  Sum_probs=30.6

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+.+++|+.+..+ .......|+|.+++.+|++.|+|...
T Consensus        58 y~~~~kgR~tiS~D-~s~~~~~L~i~~L~~eDtA~YYCAr~   97 (119)
T d1kxvc_          58 YVDSVAGRFTISQG-NAKNTAYLQMDSLKPDDTAMYYCKPS   97 (119)
T ss_dssp             ECGGGBTTEEEEEC-SSTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             hhhhhhcceEEecc-cCCcceecccccCCcCCcceEeeeec
Confidence            34667899987543 23345689999999999999999654

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.62  E-value=1.3e-05  Score=47.35  Aligned_cols=36  Identities=25%  Similarity=0.276  Sum_probs=25.1

Q ss_pred             ccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           42 YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        42 ~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+|++...+ ......+|.|.+++.+|+|.|+|.+.
T Consensus        49 ~~~r~~~~~~-~~~~~~~L~I~~~~~~Dsa~YyCA~~   84 (96)
T d1ymmd1          49 HSGRLRVTLD-TSKKSSSLLITASRAADTASYFCATD   84 (96)
T ss_dssp             CSSSCCBCCB-GGGTBCCBCCSSCCSTTCSCCEEEEE
T ss_pred             ccccceeecc-CcceecccCcCCCCcccCEEEeEeEe
Confidence            4455543211 12335789999999999999999765

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.62  E-value=7.9e-05  Score=45.31  Aligned_cols=40  Identities=20%  Similarity=0.331  Sum_probs=30.6

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      .++.+++|+.+..+ .......|+|++++.+|++.|+|...
T Consensus        59 y~~~~kgR~tis~D-~s~~~~~L~i~~L~~eDtAvYyCAr~   98 (116)
T d7fabh1          59 LDPSLRGRVTMLVN-TSKNQFSLRLSSVTAADTAVYYCARN   98 (116)
T ss_dssp             ECGGGTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eccceeecceeecc-cchhhhhccccccccccceEEEeeee
Confidence            45668899987543 23336779999999999999999653

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.61  E-value=5.9e-05  Score=45.49  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.3

Q ss_pred             CeeeEEEcccCCCCCEEEEEEEE
Q psy534           56 GMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        56 ~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+|.|.+++.+|+|.|+|.+.
T Consensus        71 ~~~~L~i~~~~~~Dsa~YyCa~~   93 (111)
T d2esve1          71 TYSTLKVQPAELEDSGVYFCASS   93 (111)
T ss_dssp             SSEEEEESSCCGGGCEEEEEEEE
T ss_pred             CEEEEEECCcccCCCceEEEeee
Confidence            35789999999999999999764

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=6.2e-05  Score=44.39  Aligned_cols=65  Identities=8%  Similarity=-0.050  Sum_probs=40.5

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.++.+.|+... +...+.|+|++..........+..     .......+.|.+|+.+|+|.|+|...+
T Consensus        19 ~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~-----~~~~~a~F~l~~vt~~~~G~Y~C~y~~   83 (99)
T d1ucta1          19 PLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKF-----WNETDPEFVIDHMDANKAGRYQCQYRI   83 (99)
T ss_dssp             ETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC---------CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred             eCCCeEEEEEcCCC-CCcEEEEEECCCcCceeccccccC-----CCCceEEEEecCCCHHHCceEEEEEEC
Confidence            45778888897663 345788888764311111100100     012356789999999999999999864

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.60  E-value=7.6e-05  Score=45.69  Aligned_cols=60  Identities=13%  Similarity=0.252  Sum_probs=37.6

Q ss_pred             EEeec---CCCccEEEEec-C-CCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           17 GDFAD---DEDIPVYIWYD-S-YPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        17 ~~w~~---g~p~p~~~w~k-~-~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      +.|.|   |....-+.++. + ......+.+++|+.+..+ .......|+|++++.+|++.|+|..
T Consensus        34 ~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d-~s~~~~~L~i~~L~~eDsAvYYCA~   98 (119)
T d1qnzh_          34 IEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVE-KSSSTVYLEFSRLTSDDSAVYYCAI   98 (119)
T ss_dssp             EEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEE-TTTTEEEEEEEEECGGGCEEEEEEE
T ss_pred             cceeeecCCCcceEeeccCCcccccchhhhhcccceeecc-cccceeeeeecccCccceeEEEEEE
Confidence            45776   44333333322 2 222334567889887543 2233567999999999999999954

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.60  E-value=6.7e-05  Score=45.62  Aligned_cols=39  Identities=18%  Similarity=0.280  Sum_probs=29.6

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..+.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        59 y~~s~kgR~tis~D-~s~n~~~L~~~~l~~eDTAvYYCAr   97 (116)
T d1a2yb_          59 YNSALKSRLSISKD-NSKSQVFLKMNSLHTDDTARYYCAR   97 (116)
T ss_dssp             ECTTTGGGEEEEEE-GGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ecccccccceEecc-CCCceEEcceeeeeeccceEEEEEE
Confidence            34667899987543 2233567999999999999999964

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.60  E-value=4.9e-05  Score=45.93  Aligned_cols=69  Identities=20%  Similarity=0.265  Sum_probs=41.7

Q ss_pred             HhhhccceeeEEeecCC---CccEEEEecCCC---C--------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEE
Q psy534            7 VKSIFQMLSVGDFADDE---DIPVYIWYDSYP---T--------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGW   72 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~---p~p~~~w~k~~~---~--------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~   72 (145)
                      +.+++..+.+-|-..+.   ....+.||+...   .        .......+|+....   ...+.+|.|.+++.+|+|.
T Consensus        11 ~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~l~~~Dsa~   87 (112)
T d1lgva1          11 SGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSK---SGNSASLTISGLQAEDEAD   87 (112)
T ss_dssp             EECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE---ETTEEEEEECSCCGGGCEE
T ss_pred             EECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEEC---CCCEeeEEeCcCccccCEE
Confidence            34567777777766532   223466776431   0        01112233443321   1347889999999999999


Q ss_pred             EEEEEE
Q psy534           73 YECKVV   78 (145)
Q Consensus        73 Y~C~~~   78 (145)
                      |+|.+.
T Consensus        88 YyCa~~   93 (112)
T d1lgva1          88 YYCSSY   93 (112)
T ss_dssp             EEEEEE
T ss_pred             EEEeee
Confidence            999765

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.60  E-value=9.1e-05  Score=44.39  Aligned_cols=60  Identities=17%  Similarity=0.170  Sum_probs=38.3

Q ss_pred             EEeec---CCCccEEEEecCC-CCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           17 GDFAD---DEDIPVYIWYDSY-PTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        17 ~~w~~---g~p~p~~~w~k~~-~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      +.|.|   |....-+.+.... .....+.+++|+.+.-+ .......|+|.+++.+|++.|+|..
T Consensus        27 ~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd-~s~n~~~L~i~~l~~eDtAvYyCA~   90 (107)
T d1sjva_          27 MGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRD-NAKKTVYLEMNSLEPEDTAVYYCYT   90 (107)
T ss_dssp             EEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEEC-TTTCCEEEEECSCCGGGCSEEEEEE
T ss_pred             EEEEEeCCccceeeeeeeeeccccccccccccceEEecC-CceeEEEEeecCCCcccceeeeEec
Confidence            44776   3333333333332 22334667899887543 2333567999999999999999964

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.59  E-value=7.6e-05  Score=44.53  Aligned_cols=62  Identities=16%  Similarity=0.215  Sum_probs=33.8

Q ss_pred             eEEeec---CCCccEEEEec-C-CCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           16 VGDFAD---DEDIPVYIWYD-S-YPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        16 ~~~w~~---g~p~p~~~w~k-~-~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      -+.|+|   |....-+.++. + ......+.+++|+.+..+ .......|+|++++.+|++.|+|...
T Consensus        20 ~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D-~s~~t~~L~~~sL~~eDTAvYYCAr~   86 (103)
T d1oari_          20 WMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVD-KPSSTAYMQLSSLTSEDSAVYYCARM   86 (103)
T ss_dssp             EEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC-----CEEEEEECCC---CCSEEEEEEE
T ss_pred             ceeeEEeCCCCceEeeeeccccccccccccceeeceEEecc-ccccEEEeeeeeccccccEEEEeEEE
Confidence            456777   33333333322 1 223345678899987643 22335679999999999999999653

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.59  E-value=5e-05  Score=45.90  Aligned_cols=24  Identities=21%  Similarity=0.158  Sum_probs=20.8

Q ss_pred             CCeeeEEEcccCCCCCEEEEEEEE
Q psy534           55 FGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        55 ~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+.+|.|.+++.+|+|.|+|.+.
T Consensus        69 ~~~~~L~I~~~~~~DsavYyCA~~   92 (112)
T d2bnub1          69 TEDFPLRLLSAAPSQTSVYFCASS   92 (112)
T ss_dssp             SSBCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEECCCCHHHCEEEEEeec
Confidence            346789999999999999999764

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.59  E-value=0.0001  Score=45.26  Aligned_cols=40  Identities=20%  Similarity=0.308  Sum_probs=29.6

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+.+++|+.+..+ .......|+|++++.+|++.|+|...
T Consensus        61 y~~~~k~Rftis~D-~s~~~~~L~i~sl~~eDsAvYyCAr~  100 (123)
T d1r0ah1          61 YNPSLKSRLTVSKD-TSNNQAFLNMMTVETADTAIYYCAQS  100 (123)
T ss_dssp             ECTTTGGGEEEEEE-GGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccceeeEEEEcccc-ccceeEEcceeecccccceEEeeccc
Confidence            34567899987532 12234679999999999999999653

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.59  E-value=3.5e-05  Score=46.03  Aligned_cols=67  Identities=18%  Similarity=0.193  Sum_probs=39.0

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCCC-----------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYPT-----------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~~-----------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      ++..+.++.+-|-.... ...+.||+...-           ........++....   ...+.+|.|.+++.+|+|.|+|
T Consensus        11 ~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~---~~~~~~L~I~~~~~~Dsa~YyC   86 (104)
T d1yqvl1          11 SASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSG---SGTSYSLTISSMETEDAATYYC   86 (104)
T ss_dssp             EECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE---ETTEEEEEESSCCGGGCEEEEE
T ss_pred             EECCCCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEec---CCCEEEEEecccCcccCCeEEE
Confidence            34556667777754322 233567765420           01112233333221   1347889999999999999999


Q ss_pred             EE
Q psy534           76 KV   77 (145)
Q Consensus        76 ~~   77 (145)
                      ..
T Consensus        87 a~   88 (104)
T d1yqvl1          87 QQ   88 (104)
T ss_dssp             EE
T ss_pred             Ee
Confidence            65

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.58  E-value=6.5e-05  Score=46.07  Aligned_cols=39  Identities=21%  Similarity=0.361  Sum_probs=30.3

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..+.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        60 y~~~~kgR~tis~D-~s~~~~~L~i~sL~~eDtAvYYCAr   98 (121)
T d1ol0a_          60 YADSVRGRFTISRD-NSKNTLYLQMNSLRAEDTAVYYCAR   98 (121)
T ss_dssp             ECGGGTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cchheeeeeEEecc-ccceeEEeeeeecccccceEEEEEE
Confidence            45678899987643 2234567999999999999999964

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.58  E-value=4.6e-05  Score=46.06  Aligned_cols=36  Identities=22%  Similarity=0.214  Sum_probs=26.9

Q ss_pred             ccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           40 EEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        40 ~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      +.+++|+....   ...+..|.|++++.+|+|.|+|...
T Consensus        58 ~~~~~rf~~s~---~~~~~~L~I~~~~~~Dsa~YyCa~~   93 (110)
T d1oaql_          58 PGVPARFSGSL---IGNKAALTITGAQTEDEAIYFCALW   93 (110)
T ss_dssp             TTSCTTEEEEE---ETTEEEEEEESCCGGGCEEEEEEEE
T ss_pred             cccceeeeecc---cccceeeecCCCCccccEeEEEEcc
Confidence            34556665432   1347889999999999999999875

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.58  E-value=0.0001  Score=44.46  Aligned_cols=68  Identities=12%  Similarity=0.160  Sum_probs=42.5

Q ss_pred             hhhccceeeEEeecCCC-ccEEEEecCCC---Cc--------ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEE
Q psy534            8 KSIFQMLSVGDFADDED-IPVYIWYDSYP---TH--------EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYEC   75 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p-~p~~~w~k~~~---~~--------~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   75 (145)
                      +..+.++.+-|-+.+.. ...+.||+...   +.        ......+|+.+..   ......|.|++++.+|+|.|+|
T Consensus        10 ~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~~~~~Dsa~YyC   86 (112)
T d1kgcd1          10 SNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAE---DRKSSTLILHRATLRDAAVYYC   86 (112)
T ss_dssp             EETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECT---TSSEEEEEESSCCGGGCEEEEE
T ss_pred             ECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecc---cCCeeEEEEeecccccceeEee
Confidence            44566777778765432 33467877531   10        1122334555432   2457789999999999999999


Q ss_pred             EEE
Q psy534           76 KVV   78 (145)
Q Consensus        76 ~~~   78 (145)
                      .+.
T Consensus        87 a~~   89 (112)
T d1kgcd1          87 ILP   89 (112)
T ss_dssp             ECC
T ss_pred             eEe
Confidence            764

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.58  E-value=7.3e-05  Score=45.78  Aligned_cols=38  Identities=16%  Similarity=0.288  Sum_probs=29.2

Q ss_pred             cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ++.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        62 ~~s~kgRfTiSrD-~s~n~~~L~~~sL~~eDtAvYYCAr   99 (120)
T d1ai1h1          62 SPSIKSRSTISRD-TSLNKFFIQLISVTNEDTAMYYCSR   99 (120)
T ss_dssp             CHHHHTTEEEEEE-TTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             chhhcccceeccc-cccceeecceeeeeccceeEEEEEe
Confidence            4557899987543 2233577999999999999999964

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.57  E-value=7.4e-05  Score=45.44  Aligned_cols=39  Identities=18%  Similarity=0.290  Sum_probs=29.4

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..+.+++|+.+..+ .......|+|++++.+|++.|+|..
T Consensus        60 y~~~~~gRftis~D-~s~~t~~L~i~~l~~eDtAvYYCAr   98 (115)
T d1f3dh1          60 FNQKFKGKATLTVD-KSSSTAFMHLNSLTFEDSAVYYCAN   98 (115)
T ss_dssp             ECGGGBTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccceeeEEEEEeec-cCceeeEeeeeecCcCCcEEEEEec
Confidence            34668899987543 2233567999999999999999953

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=4.5e-05  Score=45.64  Aligned_cols=25  Identities=36%  Similarity=0.682  Sum_probs=21.6

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ...+|.|.+++.+|+|.|.|.+...
T Consensus        67 ~~~sL~I~~v~~~D~G~Y~C~V~~~   91 (110)
T d1ncna_          67 DSWTLRLHNLQIKDKGLYQCIIHHK   91 (110)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEEE
T ss_pred             CeEEEEECCCChhHCEEEEEEEEec
Confidence            3458999999999999999998644

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=3.7e-05  Score=45.75  Aligned_cols=26  Identities=23%  Similarity=0.422  Sum_probs=22.7

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..+|.|.+++.+|+|.|.|.+.+..+
T Consensus        64 ~~sL~I~~v~~~D~G~Y~C~V~~~~~   89 (105)
T d1dr9a1          64 NLSIVILALRPSDEGTYECVVLKYEK   89 (105)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEECCT
T ss_pred             cEEEEECcCChHHCeEEEEEEEeCCC
Confidence            35899999999999999999987654

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.56  E-value=8.7e-05  Score=45.18  Aligned_cols=40  Identities=25%  Similarity=0.507  Sum_probs=30.6

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+.+++|+.+..+ .......|+|++++.+|++.|+|...
T Consensus        60 y~~~~~gR~tiS~D-~s~~t~~L~i~~L~~eDtAvYYCA~~   99 (117)
T d1iqdb1          60 YAREFQGSVTMTAD-TSTNIAYMELSSLRSDDTAVYYCAVP   99 (117)
T ss_dssp             ECGGGTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             ecceeeeeeeeecc-cccceEEEeecccCcCcceEEEEeEc
Confidence            34678899987543 23335679999999999999999753

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.55  E-value=0.00017  Score=44.36  Aligned_cols=37  Identities=14%  Similarity=0.221  Sum_probs=26.7

Q ss_pred             ccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           42 YKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        42 ~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      .++|+....+ .......|.|.+++.+|+|.|+|....
T Consensus        65 ~~~rf~~~~~-~~~~~~~L~i~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          65 PSGKFEVDRI-PETSTSTLTIHNVEKQDIATYYCALWE  101 (123)
T ss_dssp             CTTSEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ccceeEEeee-ccccceeecccccccccCcEEEEeeeC
Confidence            3567765321 223467899999999999999998753

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.54  E-value=0.00012  Score=45.52  Aligned_cols=39  Identities=15%  Similarity=0.250  Sum_probs=29.2

Q ss_pred             cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      .+.+++|+.+.-+ .......|+|++++.+|++.|+|...
T Consensus        62 ~~~~k~Rftis~d-~s~~~~~L~i~~l~~eDtAvYYCAr~  100 (132)
T d1tjgh1          62 SPSLNTRLTITKD-TSKNQVVLVMTRVSPVDTATYFCAHR  100 (132)
T ss_dssp             CGGGTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeeeeecceeccc-ccccEEEcccccCCcccceEEEEEEe
Confidence            3557889887543 22235679999999999999999754

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.53  E-value=5.4e-05  Score=45.85  Aligned_cols=23  Identities=17%  Similarity=0.356  Sum_probs=20.4

Q ss_pred             CeeeEEEcccCCCCCEEEEEEEE
Q psy534           56 GMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        56 ~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+|.|.+++.+|+|.|+|.+.
T Consensus        72 ~~~~L~I~~~~~~Dsa~YyCa~~   94 (113)
T d1nfdb1          72 YHSEMNMSALELEDSAMYFCASS   94 (113)
T ss_dssp             SCEEEECCSCCGGGCEEECEEEE
T ss_pred             CeEEEEecccCcCCceeEEEEee
Confidence            36789999999999999999765

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.53  E-value=7.1e-05  Score=45.85  Aligned_cols=70  Identities=19%  Similarity=0.140  Sum_probs=41.9

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCC---CC--------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEE
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSY---PT--------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE   74 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~---~~--------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   74 (145)
                      .+.+..+.+-|-..+..  ...+.||+..   .+        .....+++|+....+ ......+|.|.+++.+|+|.|+
T Consensus        13 v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~-~~~~~~~L~i~~~~~~Dsa~Yy   91 (120)
T d1hxma1          13 VSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDID-IAKNLAVLKILAPSERDEGSYY   91 (120)
T ss_dssp             EETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEE-GGGTEEEEEESSCCGGGCEEEE
T ss_pred             ECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeecc-ccccceecccccccccCCceee
Confidence            34556666666655432  2345666532   11        112345566654321 2234688999999999999999


Q ss_pred             EEEE
Q psy534           75 CKVV   78 (145)
Q Consensus        75 C~~~   78 (145)
                      |...
T Consensus        92 CA~~   95 (120)
T d1hxma1          92 CACD   95 (120)
T ss_dssp             EEEE
T ss_pred             cCcc
Confidence            9764

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.53  E-value=0.00014  Score=45.22  Aligned_cols=40  Identities=20%  Similarity=0.325  Sum_probs=30.9

Q ss_pred             cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           37 HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        37 ~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ...+.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        59 ~Ya~s~kgRfTiSrD-~s~~t~yL~i~~L~~eDTAvYYCAr   98 (135)
T d1ieha_          59 YYADSVKGRFTISRD-NAKNTLYLQMNSLKSEDTAVYYCAK   98 (135)
T ss_dssp             EECSTTTTTEEEEEC-TTTCCEEEEEESCCSSSCEEEEEEE
T ss_pred             cccccceEeEEEecc-CCCceeEecEeeeCcccceeeEEEE
Confidence            345678999988643 2334567999999999999999965

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.52  E-value=7.8e-05  Score=45.42  Aligned_cols=40  Identities=23%  Similarity=0.408  Sum_probs=29.7

Q ss_pred             cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           37 HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        37 ~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ...+.+++|+.+..+ .......|+|++++.+|++.|+|..
T Consensus        59 ~ya~~~kgRftisrD-~s~~tvyL~~~~L~~eDtAvYYCAr   98 (118)
T d1nlbh1          59 TYADDFKGRFAFSLE-TSASTAYLQINSLKNEDTATYFCAR   98 (118)
T ss_dssp             EECGGGSSSEEEEEE-GGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             hhhhheeeeeEEEec-CCceeEEeeeeecccCcceEEEEee
Confidence            345667899987543 1233567999999999999999943

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.51  E-value=0.0001  Score=44.78  Aligned_cols=68  Identities=21%  Similarity=0.257  Sum_probs=42.4

Q ss_pred             hhhccceeeEEeecCCC--ccEEEEecCCCC-----------cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEE
Q psy534            8 KSIFQMLSVGDFADDED--IPVYIWYDSYPT-----------HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYE   74 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p--~p~~~w~k~~~~-----------~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   74 (145)
                      .+++..+.+-|-..+..  ...+.||+...-           .......+|+....   ...+..|.|.+++.+|++.|+
T Consensus        12 v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~v~~~DsA~Yy   88 (114)
T d2rhea_          12 GTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASK---SGTSASLAISGLESEDEADYY   88 (114)
T ss_dssp             ECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEE---ETTEEEEEESSCCGGGCEEEE
T ss_pred             eCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecC---CCCeeeeEecccCcccCceEE
Confidence            35566777777665332  345667765421           11123344554421   134789999999999999999


Q ss_pred             EEEE
Q psy534           75 CKVV   78 (145)
Q Consensus        75 C~~~   78 (145)
                      |...
T Consensus        89 CA~~   92 (114)
T d2rhea_          89 CAAW   92 (114)
T ss_dssp             EEEE
T ss_pred             Eeec
Confidence            9765

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.50  E-value=6.3e-05  Score=45.86  Aligned_cols=40  Identities=18%  Similarity=0.377  Sum_probs=29.7

Q ss_pred             cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           37 HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        37 ~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ...+.+++|+.+..+ .......|+|++++.+|++.|+|..
T Consensus        59 ~y~~~~kgR~tiS~D-~s~~t~~L~~~sL~~eDTAvYYCAr   98 (118)
T d2jelh1          59 NYNQKFKGKATMTVD-KSSSTAYMELARLTSEDSAIYYCAR   98 (118)
T ss_dssp             EECGGGBTTEEEEEE-GGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             hhhhhhcccEEEecc-cCcceEeecccccccCcceeeeEEE
Confidence            345667899987542 2233467999999999999999943

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.49  E-value=9.1e-05  Score=45.07  Aligned_cols=39  Identities=18%  Similarity=0.414  Sum_probs=29.7

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..+.+++|+.+..+ .......|+|++++.+|++.|+|..
T Consensus        60 ya~s~kgRfTiS~D-~s~~t~yLq~~~L~~eDTAvYYCAr   98 (117)
T d1jnhb1          60 YTQKFKGKATLTAD-RSSSIVYLQLNSLTSEDSAVYSCSR   98 (117)
T ss_dssp             ECTTTTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cccceeEEEEEecc-CccceeeecccccCCCcceEEEEee
Confidence            34567899987543 2233567999999999999999965

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.49  E-value=9.3e-05  Score=45.07  Aligned_cols=38  Identities=21%  Similarity=0.436  Sum_probs=29.2

Q ss_pred             cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      .+.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        60 ~~~~kgRftiS~D-~s~~t~~L~m~sL~~eDtAvYYCAr   97 (117)
T d1um5h1          60 NEKFRGKATLTSD-KSSNTAYLELSSLTSEDSAVYYCAR   97 (117)
T ss_dssp             CGGGTTCEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccceeeeEEEEec-cCceeEeecccccCCCcceEEEEee
Confidence            4567899987543 2233567999999999999999964

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.47  E-value=0.00022  Score=43.53  Aligned_cols=40  Identities=20%  Similarity=0.313  Sum_probs=30.8

Q ss_pred             cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           37 HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        37 ~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ...+.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        59 ~Y~~s~kgRftiSrD-~s~~t~yLq~~~L~~eDtAvYYCAr   98 (121)
T d2p49b1          59 LYADSVKGRFTISRD-KGKNTVYLQMDSLKPEDTATYYCAA   98 (121)
T ss_dssp             EECGGGTTTEEEECT-TSTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccccceeEeEEEeec-CCceEEEEEeeeccccceeEEeeec
Confidence            345678899988643 2334567999999999999999965

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.47  E-value=9e-05  Score=45.45  Aligned_cols=40  Identities=20%  Similarity=0.362  Sum_probs=29.3

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+.+++|+.+..+ .......|+|++++.+|++.|+|...
T Consensus        60 y~~~~kgR~tis~D-~s~~t~~L~i~~L~~eDtAvYYCAr~   99 (121)
T d1j05b_          60 YVPKFQGKATITAD-TSSNTAYLQLTSLTSEDTAVYYCAPF   99 (121)
T ss_dssp             ECGGGTTTEEEEEE-GGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cchhhccceEEEee-cCCceeeecccccCcCcceEEEeEee
Confidence            34568889987532 11234669999999999999999653

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.46  E-value=8.3e-05  Score=44.70  Aligned_cols=35  Identities=20%  Similarity=0.233  Sum_probs=26.1

Q ss_pred             cccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           41 EYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        41 ~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      .+.+|+....   .....+|.|.+++.+|+|.|+|.+.
T Consensus        55 ~~~~rf~~~~---~~~~~~L~I~~l~~~Dsa~YyCA~~   89 (108)
T d1nfde1          55 GIPERFSGST---SGTTATLTISGAQPEDEAAYYCLSS   89 (108)
T ss_dssp             TSCTTEEEEE---ETTEEEEEETTCCGGGCSEEEEEEE
T ss_pred             cccceeeecC---CCCEeeeeEcCccccCCceEEEEee
Confidence            3455665432   1346889999999999999999775

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.46  E-value=5.3e-05  Score=45.93  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=20.4

Q ss_pred             CCeeeEEEcccCCCCCEEEEEEE
Q psy534           55 FGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        55 ~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ....+|.|++++.+|+|.|+|..
T Consensus        74 ~~~~~L~I~~l~~~Dsa~YyCA~   96 (113)
T d1q9ra1          74 GTDFTLTITSVQAEDLAVYYCKQ   96 (113)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCeEeEEecccccCCCeEEEecc
Confidence            34678999999999999999975

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.46  E-value=8.6e-05  Score=45.15  Aligned_cols=40  Identities=18%  Similarity=0.296  Sum_probs=30.3

Q ss_pred             cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           37 HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        37 ~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ...+.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        59 ~ya~s~kgR~tiSrD-~s~nt~yL~m~~L~~eDTAvYYCAr   98 (117)
T d1jpth1          59 IYDPKFQDRATISAD-NSKNTAYLQMNSLRAEDTAVYYCAR   98 (117)
T ss_dssp             EECTTTTTTEEEEEE-GGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cccccceeeEEEEec-cccceEEecccccCCCCceEEEEee
Confidence            345668899987543 2233567999999999999999954

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.46  E-value=0.00012  Score=44.72  Aligned_cols=39  Identities=26%  Similarity=0.523  Sum_probs=30.1

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..+.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        60 ya~s~kgRftiSrD-~s~nt~yLqm~sL~~eDTAvYYCAr   98 (119)
T d1rz7h1          60 YAEKFRGRVTITAD-TSTDTGYLELSSLRSEDTAVYYCAA   98 (119)
T ss_dssp             ECTTTTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cccceeeeEEEecc-cCceEEEeeeeccCcccceEEEEee
Confidence            34567899987543 2344667999999999999999964

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=9.6e-05  Score=43.54  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=21.5

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+.|.+|+.+|+|.|.|...++..
T Consensus        63 ~F~l~~vt~~~~G~Y~C~y~~~~~   86 (99)
T d1ucta1          63 EFVIDHMDANKAGRYQCQYRIGHY   86 (99)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTT
T ss_pred             EEEecCCCHHHCceEEEEEECCCc
Confidence            589999999999999999888764

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.45  E-value=0.00011  Score=44.82  Aligned_cols=40  Identities=13%  Similarity=0.277  Sum_probs=30.1

Q ss_pred             cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           37 HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        37 ~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ...+.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        59 ~ya~~~~~R~t~s~D-~s~~~~~L~i~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          59 FYNHKFRAKTKLTAV-TSTTTAYMELSSLTSEDSAVYYCTR   98 (117)
T ss_dssp             EECTTTTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cccccceeeEEEEcc-cCccEeEeeecccCCCcceEEEEec
Confidence            345668889887543 2333567999999999999999964

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=3.1e-05  Score=46.41  Aligned_cols=25  Identities=16%  Similarity=0.226  Sum_probs=21.2

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecCC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHVL  128 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~~  128 (145)
                      ..+|.|.+|+.+|+|.|.|.+..+-
T Consensus        78 ~~sL~I~~v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          78 VCNLLLKDLKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEECC-
T ss_pred             EEEEEECCCChhHCEEEEEEEEeCC
Confidence            3479999999999999999997653

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.45  E-value=0.0001  Score=45.17  Aligned_cols=39  Identities=15%  Similarity=0.302  Sum_probs=29.7

Q ss_pred             cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      .+.+++|+.+..+ .......|+|++++.+|++.|+|...
T Consensus        61 ~~~~kgR~tis~d-~s~n~v~L~i~~l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          61 NQKFKDKATLTVD-RSSTTAYIELVRLTSNDSAVYYCARE   99 (120)
T ss_dssp             CGGGTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             hHHhhhcceeeec-cCcceEEccccccCCCcceEEEeeec
Confidence            4567889987543 22345679999999999999999754

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.43  E-value=0.00013  Score=44.92  Aligned_cols=38  Identities=24%  Similarity=0.481  Sum_probs=29.4

Q ss_pred             cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      .+.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        60 ~~s~kgR~tis~D-~s~~t~yLq~~sL~~eDtAvYYCAr   97 (124)
T d1zvya1          60 TDSVKGRFTISQD-KAKNMAYLRMDSVKSEDTAIYTCGA   97 (124)
T ss_dssp             CGGGTTTEEEEEE-GGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccccccccEEecc-cccceeeceeccccCCcceEEEEee
Confidence            4567899987543 2233577999999999999999965

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.43  E-value=0.00014  Score=43.70  Aligned_cols=39  Identities=21%  Similarity=0.386  Sum_probs=30.0

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..+.+++|+.+..+ .......|+|++++.+|++.|+|..
T Consensus        62 ya~~~kgR~tiS~D-~s~~t~~L~i~sL~~eDTAvYYCAr  100 (109)
T d2ck0h1          62 YADSVRDRFTISRD-DSQSMLYLQMNNLKTEDTGIYYCVR  100 (109)
T ss_dssp             ECTTTTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eccccccCceeccc-cccceeEecccCCCHhHCEEEEEEE
Confidence            35668899987643 2334577999999999999999964

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.41  E-value=0.00015  Score=44.43  Aligned_cols=41  Identities=20%  Similarity=0.415  Sum_probs=30.9

Q ss_pred             cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           37 HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        37 ~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+.+++|+.+..+ .......|+|.+++.+|++.|+|...
T Consensus        60 ~ya~s~kgR~tiS~D-~s~ntvyL~~~~L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          60 KYSQKFRGRVTFTRD-TSATTAYMGLSSLRPEDTAVYYCARD  100 (122)
T ss_dssp             EECGGGTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccccceeEeeEEecc-CCcceeeecccccCCCcceEEEEeec
Confidence            345668899987543 22335679999999999999999654

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=3.4e-05  Score=46.76  Aligned_cols=25  Identities=24%  Similarity=0.558  Sum_probs=23.0

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+|+|.+++.+|+|.|.|.+.+..+
T Consensus        88 ~sL~I~~v~~~D~G~Y~C~v~~~~~  112 (124)
T d1eaja_          88 ASINVTNLQLSDIGTYQCKVKKAPG  112 (124)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEEcccEEccCEEEEEEEEECCC
Confidence            4799999999999999999998876

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.40  E-value=0.00022  Score=43.34  Aligned_cols=39  Identities=21%  Similarity=0.398  Sum_probs=29.9

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..+.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        59 y~~s~kgR~tiSrD-~s~nt~~L~i~~l~~eDtA~YyCAr   97 (118)
T d1lo4h1          59 FSDSVKGRFTISRD-IVRNILTLQMSRLRSEDTAIYYCAR   97 (118)
T ss_dssp             ECTTTBTTBEEEEE-TTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             hccccceeEEEecc-ccceeeeeccccccCCcceEEEecc
Confidence            34668899987543 2233567999999999999999964

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.39  E-value=0.00019  Score=44.19  Aligned_cols=39  Identities=18%  Similarity=0.410  Sum_probs=30.3

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..+.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        59 y~~s~kgRfTiS~D-~s~nt~yL~m~~L~~eDTAvYYCAr   97 (126)
T d1lmka1          59 YNDKFKGKATFTAD-TSSNIAYMQLSSLTSEDSAVYYCAR   97 (126)
T ss_dssp             ECGGGTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             hhhhhccceEEEec-CCccEEEeeecccCCCcceEEEEee
Confidence            45668899987543 2344678999999999999999964

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.37  E-value=0.00013  Score=44.94  Aligned_cols=62  Identities=15%  Similarity=0.204  Sum_probs=39.1

Q ss_pred             eEEeecCCCccEEEE---ec-CCC-CcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           16 VGDFADDEDIPVYIW---YD-SYP-THEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        16 ~~~w~~g~p~p~~~w---~k-~~~-~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      -+.|.|..|--.+.|   +. +.. ....+.+++|+.+..+ .......|+|.+++.+|++.|+|...
T Consensus        33 ~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D-~s~n~vyL~l~sL~~eDtAvYYCAR~   99 (125)
T d1rihh1          33 WIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTAD-RSSNTAFMYLNSLTSEDSAVYYCARE   99 (125)
T ss_dssp             CEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCccccCCCCccceeeeecCCccccccccccceeeeEEecc-cCcceEeeeeeccCcccceEEEEeee
Confidence            456777443333333   22 221 2234668899887543 22345779999999999999999653

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.37  E-value=0.00013  Score=44.38  Aligned_cols=61  Identities=11%  Similarity=0.173  Sum_probs=39.0

Q ss_pred             eEEeecCCCccEEEEe----c-CCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           16 VGDFADDEDIPVYIWY----D-SYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        16 ~~~w~~g~p~p~~~w~----k-~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      -+.|.|..|--.+.|.    . .+.....+.+++|+.+..+ .......|+|++++.+|++.|+|..
T Consensus        33 ~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D-~s~~t~yL~i~~L~~eDtAvYYCAr   98 (118)
T d1ct8b1          33 YINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVD-TSSSTAYMQFSSLTTEDSAIYYCAR   98 (118)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEE-GGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEec-CccceEEecccccCCCcceEEEEee
Confidence            3457774433333332    2 2233455678899987543 2233567999999999999999954

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=0.00029  Score=42.60  Aligned_cols=24  Identities=33%  Similarity=0.642  Sum_probs=21.4

Q ss_pred             CeeeEEEcccCCCCCEEEEEEEEE
Q psy534           56 GMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        56 ~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+|.|.+++.+|+|.|.|.+..
T Consensus        73 ~~~~L~I~~l~~~Dsa~YyCa~~~   96 (117)
T d1dqta_          73 SRVNLTIQGLRAVDTGLYLCKVEL   96 (117)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CEEEEEhhcCccccCEeEEEEEec
Confidence            468899999999999999998864

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.37  E-value=0.00012  Score=44.65  Aligned_cols=39  Identities=21%  Similarity=0.316  Sum_probs=29.1

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..+.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        60 y~~s~kgRftiSrD-~s~nt~~L~~~sL~~eDTAvYYCAr   98 (119)
T d1eapb1          60 YNEKFKVKATLTAD-QSSSTAYMQLNSLTSEDSAVYFCKR   98 (119)
T ss_dssp             ECGGGTTTEEEEEE-GGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             hhhhhhcceEEEcc-cCcceEEeeeecccCCcceEEEEEE
Confidence            34567889987543 2223467999999999999999954

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.0004  Score=42.03  Aligned_cols=25  Identities=32%  Similarity=0.553  Sum_probs=21.9

Q ss_pred             CCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           55 FGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        55 ~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ....+|.|++++.+|+|.|+|.+..
T Consensus        72 ~~~~~L~I~~l~~~Dsa~YyCa~~~   96 (118)
T d1i8lc_          72 GNQVNLTIQGLRAMDTGLYICKVEL   96 (118)
T ss_dssp             SSEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCEEEEEeeccccCCCEEEEEeEec
Confidence            4478899999999999999998864

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.35  E-value=0.00024  Score=43.30  Aligned_cols=41  Identities=22%  Similarity=0.274  Sum_probs=31.0

Q ss_pred             cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           37 HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        37 ~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+.+++|+.+..+ .......|+|.+++.+|++.|+|...
T Consensus        59 ~y~~s~kgR~TiS~D-~s~nt~~L~~~sL~~eDTAvYYCAr~   99 (119)
T d1ncwh1          59 SHNPSLKSRISITRD-TSKNQFFLQLNSVTTEDTATYYCAGL   99 (119)
T ss_dssp             EECGGGTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             hhchhccccceEecc-cccceeeccccccccCCceEEEEeEe
Confidence            345678899988643 23345779999999999999999643

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.34  E-value=0.00021  Score=43.82  Aligned_cols=39  Identities=21%  Similarity=0.406  Sum_probs=30.3

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..+.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        60 y~~s~kgR~tiS~D-~s~~t~~L~~~sL~~eDTAvYYCAR   98 (124)
T d1yedb1          60 YNEKFKGKATLTAD-KSSSTAYMQLSSLKSEDSAVYFCTR   98 (124)
T ss_dssp             ECGGGBTTEEEEEE-TTTTEEEEEEESCCGGGCEEEEEEE
T ss_pred             cccccceeEEEEcc-CCcceEEecccccCCCcceEEEecc
Confidence            45668899987543 2334577999999999999999964

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.34  E-value=0.00026  Score=43.69  Aligned_cols=41  Identities=24%  Similarity=0.421  Sum_probs=31.7

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.+++|+.+..+ .......|+|.+++.+|++.|+|....
T Consensus        60 ya~s~kgR~tiS~D-~s~~t~yL~~~sL~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          60 YAPHLQGRVTITAD-KSTSTVYLELRNLRSDDTAVYFCAGVY  100 (128)
T ss_dssp             ECTTTTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cccceeEEEEEeec-CCCceEEeeeeeccccCceEEEEeEEe
Confidence            45678899988643 223456799999999999999997653

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.34  E-value=0.00016  Score=43.92  Aligned_cols=60  Identities=17%  Similarity=0.240  Sum_probs=38.8

Q ss_pred             EEeec---CCCccEEEEec-C-CCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           17 GDFAD---DEDIPVYIWYD-S-YPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        17 ~~w~~---g~p~p~~~w~k-~-~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      +.|.|   |....-+-+.. + ......+.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        34 ~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD-~s~~t~~L~~~sL~~eDTAvYYCAr   98 (117)
T d1b2wh1          34 INWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRD-KSKNTLYLQMNSLRPEDTAVYYCAR   98 (117)
T ss_dssp             ECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECC-TTTTEEEEEECSCCGGGCEEEECCE
T ss_pred             cccccCCCCCceeeeeccCCccccccccccceeeEEEEec-cccceEEeeeccccCCcceEEEEcc
Confidence            44777   44334443332 2 223345567899988643 2334577999999999999999954

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.33  E-value=0.00026  Score=42.76  Aligned_cols=39  Identities=23%  Similarity=0.349  Sum_probs=29.4

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..+.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        60 y~~s~kgRftiSrD-~s~nt~~L~~~~L~~eDtAvYYCA~   98 (114)
T d1indh1          60 YSASVKGRFTISRD-NAQNNLYLQLNSLRSEDTALYFCAS   98 (114)
T ss_dssp             ECTTTTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEC
T ss_pred             hhhhheeeEEEecc-CccceeeeeeeeeccCcccEEEECC
Confidence            34567899987543 2233567999999999999999953

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.32  E-value=0.00014  Score=44.62  Aligned_cols=62  Identities=19%  Similarity=0.258  Sum_probs=39.1

Q ss_pred             eEEeecCCCccEEEEe---c-CC-CCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           16 VGDFADDEDIPVYIWY---D-SY-PTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        16 ~~~w~~g~p~p~~~w~---k-~~-~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      -+.|.|..|-....|.   . +. ....++.+++|+.+..+ .......|+|.+++.+|++.|+|...
T Consensus        33 ~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD-~s~~t~yL~m~sL~~eDTAvYYCAr~   99 (122)
T d1bz7b1          33 GMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRD-NPKNTLFLQMTSLRSEDTAIYYCTRG   99 (122)
T ss_dssp             CEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEE-GGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ceEccccCCCcceeeeeecCcccccccccceeeeeEEEecc-CCccEeEeeeeeecccCceEEEeecC
Confidence            3567774433333332   2 22 22345668899987543 22235679999999999999999653

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.32  E-value=0.00014  Score=45.11  Aligned_cols=40  Identities=20%  Similarity=0.334  Sum_probs=30.7

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+.+++|+.+..+ .......|+|.+++.+|++.|+|...
T Consensus        62 ya~s~kgR~tiS~D-~s~nt~~Lq~~~L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          62 YAASVKGRFTISRD-DSKNTLYLQMNSLKTEDTAVYSCTTD  101 (131)
T ss_dssp             ECTTTTTTEEEEEE-GGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             hccceeEEEEEecc-cccceeecceeccccCCceEEEEecc
Confidence            45678899987543 22335779999999999999999764

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.31  E-value=0.00018  Score=43.58  Aligned_cols=40  Identities=20%  Similarity=0.367  Sum_probs=30.6

Q ss_pred             cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           37 HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        37 ~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ...+.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        59 ~ya~s~kgR~tiS~D-~s~~tvyL~~~sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          59 HYNEKFKNKATLTVD-TSSSTAYMQLSSLTSDDSAVYYCAN   98 (116)
T ss_dssp             EECGGGTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccccccceeeeEecc-cccceeEecccccCCCCceEEEEcc
Confidence            345678899987543 2344577999999999999999954

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.31  E-value=0.00014  Score=44.42  Aligned_cols=39  Identities=21%  Similarity=0.375  Sum_probs=29.8

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..+.+++|+.+..+ .......|+|++++.+|++.|+|..
T Consensus        62 Ya~s~kgR~tiSrD-~s~nt~yL~~~~L~~eDTAvYYCAr  100 (121)
T d1nfdf1          62 YADSVRGRFTISRD-DSRNSIYLQMNRLRVDDTAIYYCTR  100 (121)
T ss_dssp             ECGGGTTTBCCEEC-TTTSEEEEEEESCCGGGCEECEEEE
T ss_pred             cchheeeeeEEccc-cccceeeceecccCCCcceEEEEec
Confidence            34568889887543 2333567999999999999999964

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.31  E-value=0.00026  Score=43.06  Aligned_cols=40  Identities=18%  Similarity=0.287  Sum_probs=30.6

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+.+++|+.+..+ .......|+|.+++.+|++.|+|...
T Consensus        60 Y~~s~kgRftiSrD-~s~nt~~L~~~sL~~eDtAvYYCAr~   99 (118)
T d2fbjh1          60 YTPSLKDKFIISRD-NAKNSLYLQMSKVRSEDTALYYCARL   99 (118)
T ss_dssp             ECTTTTTTEEEEEC-SSSCEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccccceeeEEEeec-CccceeeccccccCCCcceEEEeeEe
Confidence            35668899987643 22335679999999999999999653

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.0006  Score=39.89  Aligned_cols=62  Identities=10%  Similarity=-0.024  Sum_probs=41.8

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.++.+.|+......-.+.|+|++..... .    ...     ......+.|.+++.+|+|.|+|....
T Consensus        16 V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~-~----~~~-----~~~~a~F~l~~v~~~~~G~Y~C~y~~   77 (96)
T d1ucta2          16 LMPGENISLTCSSAHIPFDRFSLAKEGELSLP-Q----HQS-----GEHPANFSLGPVDLNVSGIYRCYGWY   77 (96)
T ss_dssp             ECTTCCCEEEEECSSSCCSEEEEEETTCSSCC-S----EEE-----CSSSEEEECCSCCGGGCEEEEEEEEC
T ss_pred             cCCCCeEEEEEeCCCCCceEEEEEECCcccce-E----EcC-----CCcccEEEEeccccccCcEEEEEEEc
Confidence            34677888999864334457889998753111 1    111     12256789999999999999998863

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00066  Score=39.53  Aligned_cols=63  Identities=6%  Similarity=0.006  Sum_probs=40.8

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.++.+.|+.... ...+.|+|++.... ...  +    ..........+.|.+|+.+|+|.|+|....
T Consensus        16 ~~G~~VTL~C~~~~~-~~~f~L~k~g~~~~-~~~--~----~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (95)
T d1olla1          16 PKEKQVTICCQGNYG-AVEYQLHFEGSLFA-VDR--P----KPPERINKVKFYIPDMNSRMAGQYSCIYRV   78 (95)
T ss_dssp             ETTCCEEEEEECCTT-CCEEEEEETTEEEE-EEC--C----SSCTTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             cCCCcEEEEEecCCC-ccEEEEEECCCCcc-eeE--E----ccCCCccEEEEEEeeeecCCCceEEEEeCC
Confidence            467889999987633 45677888763210 000  0    000012256799999999999999998764

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.30  E-value=0.00023  Score=43.85  Aligned_cols=62  Identities=19%  Similarity=0.212  Sum_probs=40.1

Q ss_pred             eEEeecCCCccEEEE---ecC-C-CCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           16 VGDFADDEDIPVYIW---YDS-Y-PTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        16 ~~~w~~g~p~p~~~w---~k~-~-~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      -+.|.|..|-..+.|   ... . .....+.+++|+.+..+ .......|+|.+++.+|++.|+|...
T Consensus        33 ~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D-~s~~t~yL~~~~L~~eDTA~YYCAr~   99 (127)
T d2fb4h1          33 AMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRN-DSKNTLFLQMDSLRPEDTGVYFCARD   99 (127)
T ss_dssp             CEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ceeeeecCCCcceeeeeecccccccchhcccccceEEEecc-CCccEEEeeeeeeeecceeEEEEEEe
Confidence            345777444333334   222 2 22345668899987543 23345779999999999999999653

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.29  E-value=7.3e-05  Score=45.49  Aligned_cols=40  Identities=20%  Similarity=0.294  Sum_probs=29.2

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+.+++|+.+..+ .......|+|.+++.+|++.|+|...
T Consensus        59 y~~~~kgR~tis~D-~s~~tv~L~~~~L~~eDTAvYyCAr~   98 (116)
T d1fn4b1          59 YNSALKSRLSISRD-TSKNQVFLKMNSLQTDDTGTYYCTRD   98 (116)
T ss_dssp             ECHHHHTTBCCEEE-GGGTEEECCEESCCCCCCEEEEEEEE
T ss_pred             ccccccceEEEccc-cccchhhcceeccCCCCCEEEEEEee
Confidence            34567889887543 12235669999999999999999653

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.27  E-value=0.00018  Score=44.04  Aligned_cols=40  Identities=18%  Similarity=0.315  Sum_probs=29.9

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+.+++|+.+..+ .......|+|++++.+|++.|+|...
T Consensus        60 y~~s~kgR~tis~D-~s~nt~~L~i~~L~~eDtAvYYCAr~   99 (123)
T d1mqkh_          60 YPDTVKGRFTISRD-NAKNTLYLQMSSLKSEDTAMYYCVRH   99 (123)
T ss_dssp             CCTTTBTTEEEEEE-GGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cchhccEEEEEEec-CcccccccceeeeccCcccceeEEec
Confidence            34567899987543 12234679999999999999999653

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.27  E-value=0.00018  Score=43.07  Aligned_cols=23  Identities=39%  Similarity=0.648  Sum_probs=20.3

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+.+.
T Consensus        71 ~~L~I~~l~~~Dsa~YyCa~~~~   93 (107)
T d1c5cl1          71 YSLTISSLESEDFADYYCLQYAS   93 (107)
T ss_dssp             EEEEESSCCGGGCSEEEEEECSS
T ss_pred             EEEEEhhhcccCCeEEEEecCcC
Confidence            47999999999999999987654

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.27  E-value=0.00046  Score=42.19  Aligned_cols=38  Identities=21%  Similarity=0.386  Sum_probs=29.5

Q ss_pred             cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      .+.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        63 ~~s~kgRftiSrD-~s~nt~~L~~~sL~~eDTAvYYCar  100 (122)
T d1q9rb1          63 SPSVKGRFTISRD-NSQSILYLQMNTLRAEDSATYYCAR  100 (122)
T ss_dssp             CTTTBTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             chheeecceeeee-cccceeccceeeeccCcceEEEEEe
Confidence            4567899987543 2233567999999999999999975

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.26  E-value=0.00026  Score=43.53  Aligned_cols=40  Identities=23%  Similarity=0.321  Sum_probs=30.7

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+.+++|+.+..+ .......|+|.+++.+|++.|+|...
T Consensus        60 y~~s~kgR~tiS~D-~s~nt~~L~~~~L~~eDtavYYCAr~   99 (126)
T d1dfbh1          60 YADSVKGRFTISRD-NAKNSLYLQMNSLRAEDMALYYCVKG   99 (126)
T ss_dssp             ECGGGTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             hccccccceEEecc-CCCcEEEeeeeeeccCcceEEEEEec
Confidence            34668899988643 23345779999999999999999653

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=3.1e-05  Score=45.47  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=20.6

Q ss_pred             EEEEcccCCCCCeeeEEEEecC
Q psy534          106 ELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      +|.|.+++.+|+|.|+|.+.+.
T Consensus        68 sL~I~~l~~~DsG~Y~C~v~~~   89 (97)
T d2nxyb1          68 PLIIKNLKIEDSDTYICEVEDQ   89 (97)
T ss_dssp             CEEECSCCGGGCEEEEEEETTE
T ss_pred             EEEECCCChHHCEEEEEEEecC
Confidence            6999999999999999999875

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.23  E-value=0.00019  Score=42.87  Aligned_cols=23  Identities=39%  Similarity=0.671  Sum_probs=20.3

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+.+.
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~~   93 (106)
T d1i8ka_          71 FVFTIENTLSEDVGDYYCLQSFN   93 (106)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSS
T ss_pred             eeecccCCccccCEEEeEecCcc
Confidence            47999999999999999987654

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00011  Score=43.03  Aligned_cols=24  Identities=21%  Similarity=0.436  Sum_probs=21.1

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+.|.+|+.+|+|.|.|...++..
T Consensus        58 ~F~i~~v~~~~~G~Y~C~y~~~~~   81 (95)
T d1olla1          58 KFYIPDMNSRMAGQYSCIYRVGEL   81 (95)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEeeeecCCCceEEEEeCCCCC
Confidence            589999999999999999887643

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00015  Score=43.24  Aligned_cols=25  Identities=20%  Similarity=0.396  Sum_probs=21.3

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|.|.+..+-.
T Consensus        70 ~~L~I~~l~~~DsG~Y~C~v~~~~~   94 (108)
T d1hkfa_          70 FTVTMTDLREEDSGHYWCRIYRPSD   94 (108)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTTT
T ss_pred             EEEEEhhhCCCCCEEEEEEEecCCC
Confidence            3699999999999999999875543

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.21  E-value=0.00021  Score=44.09  Aligned_cols=39  Identities=21%  Similarity=0.247  Sum_probs=29.7

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..+.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        60 y~~s~kgR~tis~d-~s~nt~yL~l~~l~~eDtAvYyCAr   98 (127)
T d3cx5j1          60 YNPSLKDRLSITRD-TSKNQFFLKLNSVTTEDTATYYCAR   98 (127)
T ss_dssp             ECTTTTTTBCCEEE-TTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             hcccccccceeecc-cccceeecceeccccccceEEEeee
Confidence            45667889876543 2234577999999999999999965

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.21  E-value=0.00022  Score=43.95  Aligned_cols=40  Identities=28%  Similarity=0.424  Sum_probs=31.1

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+.+++|+.+..+ .......|+|++++.+|++.|+|...
T Consensus        60 y~~s~kgR~tiSrD-~s~~t~yL~~~sL~~eDTavYYCAR~   99 (127)
T d2fx7h1          60 YAPRFQGRITITAD-RSTSTAYLELNSLRPEDTAVYYCARE   99 (127)
T ss_dssp             ECGGGTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccceeeeeEEEecc-CccceEeeeecccCcccceEEEEeec
Confidence            45668899987643 23345779999999999999999764

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.20  E-value=0.00024  Score=42.42  Aligned_cols=24  Identities=25%  Similarity=0.549  Sum_probs=20.6

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ...|.|.+++.+|+|.|.|.+.+.
T Consensus        70 ~~~L~I~~~~~~Dsa~YyCa~~~~   93 (107)
T d1j1pl_          70 DFTLSINSVETEDFGMYFCQQANS   93 (107)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECSS
T ss_pred             EEEEEEcccCcCCCEEEEEEcCCC
Confidence            347999999999999999987654

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.20  E-value=0.0005  Score=41.87  Aligned_cols=39  Identities=28%  Similarity=0.461  Sum_probs=29.5

Q ss_pred             cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ++.+++|+.+..+ .......|+|.+++.+|++.|+|...
T Consensus        63 a~s~kgRftiS~D-~s~n~~~L~~~~L~~eDtAvYYCA~~  101 (120)
T d1dlfh_          63 AESVKGRFTISRD-DSKRRVYLQMNTLRAEDTGIYYCTGI  101 (120)
T ss_dssp             CTTTTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             chhceecceeecc-cccceeccceeeccCCCceEEEeeEe
Confidence            4567889987532 22335679999999999999999653

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.20  E-value=0.00016  Score=42.14  Aligned_cols=23  Identities=26%  Similarity=0.406  Sum_probs=20.5

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .+|.|.+++.+|+|.|.|.+...
T Consensus        57 ~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1          57 VSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             EEEEECSCCGGGCEEEEEEEESS
T ss_pred             EeEEeeccccCcCccceeeEecC
Confidence            47999999999999999988754

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.18  E-value=0.00033  Score=42.70  Aligned_cols=41  Identities=24%  Similarity=0.450  Sum_probs=31.1

Q ss_pred             cccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           37 HEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        37 ~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ...+.+++|+.+..+ .......|+|.+++.+|++.|+|...
T Consensus        59 ~y~~s~kgRftiS~D-~s~nt~~L~m~~L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          59 KYNEKFKGRATLTVD-TSTNTAYMELSSLRSEDTAFYFCARE   99 (120)
T ss_dssp             EECGGGBTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeccceeeeEEEEec-CcceEEeccccccCCCcceEEEEEEc
Confidence            345668899987543 23346789999999999999999653

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.18  E-value=0.00016  Score=44.66  Aligned_cols=39  Identities=21%  Similarity=0.405  Sum_probs=29.1

Q ss_pred             cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      .+.+++|+.+..+ .......|+|.+++.+|++.|+|...
T Consensus        66 ~~~~kgR~tis~d-~s~~~~~L~i~~l~~eDtAvYYCAr~  104 (127)
T d1i3ua_          66 ADSVKGRFAVSRD-NAKNTVNLQMNSLKPEDTAVYYCAAK  104 (127)
T ss_dssp             CTTTBTTEEEEEE-GGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             chhhccceeEecc-CCceEEEEeeecccccceeEEEEEEE
Confidence            3557788887532 22335679999999999999999764

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.18  E-value=0.00023  Score=44.06  Aligned_cols=39  Identities=23%  Similarity=0.461  Sum_probs=29.9

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..+.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        60 y~~s~kgR~tiS~D-~s~~t~yL~~~sL~~eDtA~YYCAr   98 (130)
T d1rzga1          60 YAQRFQGRVSITAD-ESTSTAYMELSSLRSEDTAVFYCAS   98 (130)
T ss_dssp             ECGGGBTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cccccccceEEecc-cccceEEeeeeecCCCccEEEEEEE
Confidence            34668899987543 2233567999999999999999965

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.16  E-value=0.00025  Score=42.64  Aligned_cols=28  Identities=25%  Similarity=0.427  Sum_probs=22.8

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecCCCC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHVLYP  130 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  130 (145)
                      +...|.|.+++.+|+|.|.|.+.+..+.
T Consensus        71 ~~~~L~I~~l~~~Dsa~YyCa~~~~~~~   98 (112)
T d1lgva1          71 NSASLTISGLQAEDEADYYCSSYDGSST   98 (112)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEECSSSS
T ss_pred             CEeeEEeCcCccccCEEEEEeeecCCCC
Confidence            3457999999999999999988765443

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.16  E-value=0.00021  Score=44.03  Aligned_cols=39  Identities=18%  Similarity=0.382  Sum_probs=29.5

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..+.+++|+.+..+ .......|+|++++.+|++.|+|.-
T Consensus        60 ya~s~kgR~tiS~D-~s~nt~yL~~~~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          60 FSAKFQDRVTFTAD-TSANTAYMELRSLRSADTAVYYCAR   98 (127)
T ss_dssp             ECTTTTTTEEEEEE-GGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cchhccccceEecc-cCceEEEEEEEccCCCCceEEEEEe
Confidence            45668899987643 1223467999999999999999954

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.16  E-value=0.00028  Score=41.77  Aligned_cols=24  Identities=33%  Similarity=0.511  Sum_probs=20.5

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ...|.|.+++.+|+|.|.|.+...
T Consensus        67 ~~~L~I~~l~~~Dsa~YyCA~~~~   90 (103)
T d8faba1          67 TVTLTISGVQAEDEADYYCQAWDN   90 (103)
T ss_dssp             EEEEEETTCCGGGCEEEEEEEEET
T ss_pred             ccCceEcCcchhHCceEEeeecCC
Confidence            357999999999999999987653

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=3.1e-05  Score=46.63  Aligned_cols=24  Identities=38%  Similarity=0.401  Sum_probs=22.6

Q ss_pred             EEEEcccCCCC-CeeeEEEEecCCC
Q psy534          106 ELRISNIRSQD-IGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d-~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+| +|.|+|.|.|.+|
T Consensus        70 ~L~I~~v~~~D~~G~Y~C~A~N~~G   94 (115)
T d2crya1          70 TLTISNIVRADFQTIYNCTAWNSFG   94 (115)
T ss_dssp             EEECTTCCHHHHHSCEEEEEECSSC
T ss_pred             EEEEeccchhcCCeEEEEEEEECCC
Confidence            69999999999 6999999999999

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.13  E-value=0.00017  Score=43.12  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=19.7

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~   92 (110)
T d1u3ha1          71 LSLHIADSQPGDSATYFCAASA   92 (110)
T ss_dssp             EEEEESSCCTTSCSEEEECCEE
T ss_pred             eEeEeccCCCCCceeEeeeecC
Confidence            4699999999999999998764

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.13  E-value=0.00032  Score=41.82  Aligned_cols=24  Identities=29%  Similarity=0.452  Sum_probs=20.4

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ...|.|.+++.+|+|.|.|.+...
T Consensus        70 ~~~L~I~~l~~~DSa~YyCa~~~~   93 (107)
T d1kcvl1          70 DFTLTISSVQADDDADYYCGQSYS   93 (107)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECSS
T ss_pred             eeecEEHhheecCCceEEEEecCC
Confidence            347999999999999999987643

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.12  E-value=0.00041  Score=41.55  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=20.1

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+.+.
T Consensus        71 ~~L~i~~l~~~Dsa~YyCA~~~~   93 (108)
T d1jhll_          71 FTLTISSLEPEDFAMYICQQHNE   93 (108)
T ss_dssp             EEEEECSCCTTCCSEEEEEECSS
T ss_pred             EEeEeeeeEeccceEEEEeeCCC
Confidence            47999999999999999976654

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.11  E-value=0.00041  Score=42.57  Aligned_cols=40  Identities=25%  Similarity=0.347  Sum_probs=30.7

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+.+++|+.+.-+ .......|+|.+++.+|++.|+|...
T Consensus        60 Y~~s~kgRftiSrD-~s~~t~~Lqm~sL~~eDTAvYYCAr~   99 (125)
T d1op3h1          60 YADAVKGRFTVSRD-DLEDFVYLQMHKMRVEDTAIYYCARK   99 (125)
T ss_dssp             ECTTTTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cccccccceEEecc-CccceEeeeeeccCCccceeEeEeec
Confidence            34667899987543 23346779999999999999999654

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.11  E-value=0.00037  Score=43.20  Aligned_cols=39  Identities=23%  Similarity=0.450  Sum_probs=29.9

Q ss_pred             cccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           39 AEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        39 ~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      .+.+++|+.+..+ .......|+|.+++.+|++.|+|...
T Consensus        60 ~~s~kgR~tis~D-~s~~t~~L~~~~L~~eDtA~YYCAr~   98 (133)
T d1rzfh1          60 AQKFRGRVTISAD-ESTRTVYLHLRGLRSDDTAVYYCASN   98 (133)
T ss_dssp             CGGGTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cccccccEEEEec-cCcceeEEeeccCCCCCCEEEEeeec
Confidence            4567899987543 23345779999999999999999654

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.10  E-value=0.00012  Score=44.04  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=20.7

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .+|.|.+++.+|+|.|.|.+.++-+
T Consensus        81 ~sL~I~~v~~~DsG~Y~C~v~~~~~  105 (119)
T d1neua_          81 GSIVIHNLDYSDNGTFTCDVKNPPD  105 (119)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEC---
T ss_pred             EEEEECCCChHHCEEEEEEEEECCC
Confidence            4799999999999999999988543

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.08  E-value=0.00038  Score=43.00  Aligned_cols=40  Identities=25%  Similarity=0.459  Sum_probs=30.2

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+.+++|+.+..+ .......|+|.+++.+|++.|+|...
T Consensus        59 y~~~~kgR~tis~D-~s~~tv~L~~~~L~~eDtAvYyCAr~   98 (130)
T d1rhhb1          59 YAQKFRGRVTFTAD-QATSTAYMELTNLRSDDTAVYYCARD   98 (130)
T ss_dssp             ECGGGTTTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cccceeeeeEEecc-CCccEEEEEeeccCCCCcEEEEEEee
Confidence            34567889887543 22335679999999999999999664

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.07  E-value=0.00036  Score=41.59  Aligned_cols=23  Identities=35%  Similarity=0.573  Sum_probs=20.3

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        70 ~~L~I~~~~~~DsA~YyCa~~~~   92 (106)
T d1a0ql1          70 YSFSISNLEPEDIATYYCLQYYN   92 (106)
T ss_dssp             EEEEECSCCGGGCSEEEEEECSS
T ss_pred             eeeEehhhcccCCEeEEEEEeCC
Confidence            47999999999999999987653

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.07  E-value=0.00025  Score=42.68  Aligned_cols=25  Identities=28%  Similarity=0.429  Sum_probs=21.1

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      ..|.|.+++.+|+|.|.|.+....+
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~~~~   95 (113)
T d1h5ba_          71 STLHIRDAQLEDSGTYFCAAEASSG   95 (113)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSS
T ss_pred             eEEEECCCCHhHCEEEEEEecCCCC
Confidence            3699999999999999998875443

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.06  E-value=0.00038  Score=42.67  Aligned_cols=39  Identities=18%  Similarity=0.395  Sum_probs=29.9

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..+.+++|+.+..+ .......|+|.+++.+|++.|+|..
T Consensus        60 ya~s~kgR~tiSrD-~s~~t~yL~~~~L~~eDTA~YYCAR   98 (124)
T d2b1hh1          60 YSPSFEGQVTMSAD-RSTNTAHLQWSSLKPSDTALYYCAR   98 (124)
T ss_dssp             ECTTTTTTCEEEEE-TTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             ccccceeeEEEeec-CCCcEEEEeeeccccccceEEEEee
Confidence            45668899987543 2234567999999999999999954

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.05  E-value=0.00052  Score=42.19  Aligned_cols=39  Identities=18%  Similarity=0.344  Sum_probs=28.9

Q ss_pred             ccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           38 EAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        38 ~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..+.+++|+.+..+ .......|+|++++.+|++.|+|..
T Consensus        59 y~~~~kgR~tis~D-~s~~~~~L~i~~l~~eDTAvYYCAr   97 (126)
T d1rjca1          59 YADSVQGRLTISLD-NAKNTLYLQMNSLKPEDTAMYYCAA   97 (126)
T ss_dssp             ECTTTTTTEEEEEE-C--CEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccccceeeEEEEec-CCceEEEEEEeccCcccCceeEEEe
Confidence            34567889987543 2233566999999999999999965

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.03  E-value=0.00033  Score=42.03  Aligned_cols=22  Identities=23%  Similarity=0.507  Sum_probs=19.7

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        73 ~~L~I~~~~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          73 STLKIQRTQQEDSAVYLCASSL   94 (112)
T ss_dssp             EEEEESSCCGGGCEEEEEEEES
T ss_pred             EEEEECCCCcCCCEEEEEeeeC
Confidence            4799999999999999998854

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.01  E-value=0.00059  Score=40.61  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=19.6

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        70 ~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          70 FTLTISGLQFDDFATYHCQHYA   91 (106)
T ss_dssp             EEEEEESCCGGGCSEEEEEEEC
T ss_pred             EEEEEccccccCCCcEeeeeCC
Confidence            4699999999999999998764

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.00  E-value=0.00051  Score=41.19  Aligned_cols=22  Identities=23%  Similarity=0.471  Sum_probs=19.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        72 ~~L~I~~~~~~Dsa~YyCA~~~   93 (113)
T d2ntsp1          72 SEMNVSTLELGDSALYLCASSL   93 (113)
T ss_dssp             EEEEECSCCGGGCEEEEEEEES
T ss_pred             eEEEECCCCcccceeeeeeeeC
Confidence            4799999999999999998764

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.99  E-value=0.00029  Score=43.01  Aligned_cols=36  Identities=19%  Similarity=0.296  Sum_probs=28.7

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC-----CCCcEEEEeCeeE
Q psy534          105 TELRISNIRSQDIGDYTCLATHV-----LYPDLLVVLGSFH  140 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~-----~g~~~~v~~~~~~  140 (145)
                      ..|.|.+++.+|+|.|.|.+...     .|.+|+|.+++.+
T Consensus        71 ~~L~I~~~~~~DsavYyCa~~~~~~~FG~GT~LtV~~~~~~  111 (119)
T d1f3rb2          71 YTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELKAAEQK  111 (119)
T ss_dssp             EEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCSSSCCC
T ss_pred             EEEEcccCccCCCeEEEeeccCCCCeECCCeEEEEeCCCcC
Confidence            47999999999999999986552     2488888777755

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00027  Score=42.02  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=18.6

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.+.....+|.|.|+|+|+|.++
T Consensus        64 ~l~~~~~~~d~g~~ytC~A~n~~~   87 (106)
T d1zxqa1          64 TFNSTADREDGHRNFSCLAVLDLM   87 (106)
T ss_dssp             EEEEECCGGGGGCEEEEEEEEECG
T ss_pred             EEEEeeehhcCCcEEEEEEEecCC
Confidence            456666666677899999999886

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.99  E-value=0.00037  Score=41.77  Aligned_cols=22  Identities=23%  Similarity=0.546  Sum_probs=19.5

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        73 ~~L~i~~~~~~Dsa~YyCa~~~   94 (111)
T d2esve1          73 STLKVQPAELEDSGVYFCASSQ   94 (111)
T ss_dssp             EEEEESSCCGGGCEEEEEEEES
T ss_pred             EEEEECCcccCCCceEEEeeeC
Confidence            4799999999999999998654

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.97  E-value=0.00043  Score=41.31  Aligned_cols=24  Identities=21%  Similarity=0.497  Sum_probs=20.6

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ...|.|.+++.+|+|.|.|.+...
T Consensus        70 ~~~L~I~~~~~~Dsa~YyCa~~~~   93 (107)
T d1ospl1          70 DYTLSITSLQTEDVATYFCQQYWS   93 (107)
T ss_dssp             SEEEEESSCCGGGCSEEEEEECSS
T ss_pred             eEEeEEcccccccCCcEEEeeccC
Confidence            357999999999999999987643

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.97  E-value=0.00045  Score=41.53  Aligned_cols=23  Identities=22%  Similarity=0.489  Sum_probs=20.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .+|.|.+++.+|+|.|.|.+...
T Consensus        72 ~sL~i~~~~~~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          72 SSLHITASQLSDSASYICVVSDR   94 (114)
T ss_dssp             EEEEECSCCGGGCSEEEEEEECS
T ss_pred             cccEEcccChhhCcccceeeecC
Confidence            47999999999999999999864

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.97  E-value=0.00033  Score=41.86  Aligned_cols=22  Identities=36%  Similarity=0.588  Sum_probs=19.5

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d3cx5k1          71 YSLTISNLEPEDIATYFCQHHI   92 (107)
T ss_dssp             EEEECSCCCSCCCSEEEEEECS
T ss_pred             EEEEEeEeeecCCCcEEeeeCC
Confidence            4799999999999999997654

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.96  E-value=0.00016  Score=43.71  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=19.6

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        73 ~~L~I~~~~~~Dsg~YyCa~~~   94 (115)
T d1i9ea_          73 FHLRKASVHWSDSAVYFCAVSG   94 (115)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEecccccccccceecccccC
Confidence            4799999999999999998764

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.95  E-value=0.00065  Score=40.46  Aligned_cols=23  Identities=35%  Similarity=0.580  Sum_probs=20.2

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~~   93 (107)
T d1d5il1          71 YSLTISSLEYEDMGIYYCLQYDE   93 (107)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSS
T ss_pred             EEccccccCCcCCEEEEeeeccC
Confidence            47999999999999999987654

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.95  E-value=0.00058  Score=40.59  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=19.3

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        70 ~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1lk3l1          70 FTLTIDPVEADDTAIYFCQQSW   91 (106)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             EEeEECCcChhhCCCccccccc
Confidence            4799999999999999997654

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.95  E-value=0.00047  Score=41.21  Aligned_cols=24  Identities=13%  Similarity=0.156  Sum_probs=20.4

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ...|.|.+++.+|+|.|.|.+...
T Consensus        73 ~~~L~I~~~~~~Dsa~YyCa~~~~   96 (110)
T d2aq2a1          73 QFSLILESATPSQTSVYFCASGGG   96 (110)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEEEECCCCHhhCEEEEEeeCCC
Confidence            347999999999999999987653

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.94  E-value=0.00036  Score=42.21  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.3

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~~   93 (115)
T d1ogad1          71 SSLHITAAQPGDTGLYLCAGAGS   93 (115)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECT
T ss_pred             eeeeecCCCccceeeEcccccCC
Confidence            47999999999999999987744

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.94  E-value=0.0006  Score=40.80  Aligned_cols=23  Identities=26%  Similarity=0.544  Sum_probs=20.2

Q ss_pred             CcEEEEcccCCCCCeeeEEEEec
Q psy534          104 GTELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ...|.|.+++.+|+|.|.|.+..
T Consensus        70 ~~~L~I~~~~~~DSa~YyCA~~~   92 (109)
T d1mqkl_          70 QFSLKINSLLPEDFGSYYCQHHY   92 (109)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECS
T ss_pred             EEEEEEccccccCCeeEEEeeeC
Confidence            34799999999999999998764

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.92  E-value=0.00061  Score=40.81  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=20.9

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ...|.|.+++.+|+|.|.|.+...
T Consensus        71 ~~~L~I~~~~~~Dsa~YyCA~~~~   94 (111)
T d1rzfl1          71 SATLGITGLQTGDEADYYCGTWDS   94 (111)
T ss_dssp             EEEEEESSCCGGGCSEEEEEEEET
T ss_pred             EeeeEEeeeccccCcceEEeecCC
Confidence            357999999999999999988654

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.92  E-value=0.00051  Score=40.94  Aligned_cols=23  Identities=35%  Similarity=0.644  Sum_probs=19.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+.+.
T Consensus        71 ~~L~I~~l~~~DsA~YyCa~~~~   93 (107)
T d1tjgl1          71 FTLTISTLRPEDFATYYCQQLHF   93 (107)
T ss_dssp             EEEEESSCCGGGCSEEEEEECSB
T ss_pred             EEEEeccceeCcCceEEEEECcC
Confidence            47999999999999999976543

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.92  E-value=0.00059  Score=41.23  Aligned_cols=23  Identities=39%  Similarity=0.606  Sum_probs=20.2

Q ss_pred             CcEEEEcccCCCCCeeeEEEEec
Q psy534          104 GTELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ...|.|.+++.+|++.|.|.+..
T Consensus        71 ~~~L~I~~v~~~DsA~YyCA~~~   93 (114)
T d2rhea_          71 SASLAISGLESEDEADYYCAAWN   93 (114)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             eeeeEecccCcccCceEEEeecC
Confidence            34799999999999999998764

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.90  E-value=0.00069  Score=40.07  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.4

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        69 ~~L~I~~~~~~Dsa~YyCa~~~   90 (104)
T d1yqvl1          69 YSLTISSMETEDAATYYCQQWG   90 (104)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             EEEEecccCcccCCeEEEEecC
Confidence            4799999999999999997654

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.89  E-value=0.00063  Score=40.56  Aligned_cols=22  Identities=32%  Similarity=0.667  Sum_probs=19.5

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..|.|.+++.+|++.|.|.+..
T Consensus        71 ~~L~I~~~~~~DsA~YyCa~~~   92 (107)
T d1mexl1          71 FTLTINNVQSEDLAEYFCQQYN   92 (107)
T ss_dssp             EEEEESSCCGGGCSEEEEEECS
T ss_pred             eeeeechhheecceeEEEeECC
Confidence            4799999999999999997654

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.88  E-value=0.00047  Score=41.48  Aligned_cols=23  Identities=13%  Similarity=0.291  Sum_probs=20.1

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.++..+|+|.|.|.+...
T Consensus        72 ~~L~I~~~~~~DSa~YyCa~~~~   94 (114)
T d1ogae1          72 FPLTVTSAQKNPTAFYLCASSSR   94 (114)
T ss_dssp             CCEEECSCCSCCCEEEEEEEESS
T ss_pred             EEEEECcCCcCCceeEEEeeccC
Confidence            36999999999999999987654

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00038  Score=41.76  Aligned_cols=22  Identities=27%  Similarity=0.614  Sum_probs=19.5

Q ss_pred             EEEEcccCCCCCeeeEEEEecC
Q psy534          106 ELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .|+|.+++.+|+|.|.|.+...
T Consensus        77 ~Lti~~l~~~Dsg~Y~Cav~~~   98 (113)
T d1smoa_          77 RVRMVNLQVEDSGLYQCVIYQP   98 (113)
T ss_dssp             EEEECSCCGGGCEEEEEEECCT
T ss_pred             EEEEccCCcccCceEEEEEECC
Confidence            5999999999999999987554

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00055  Score=41.19  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=20.2

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        77 ~~L~I~~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          77 FVLTLSDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEET
T ss_pred             hhcEEccCCCCCCEEEeEeEcCC
Confidence            47999999999999999987643

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.86  E-value=0.00079  Score=40.30  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=20.2

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        70 ~~L~I~~l~~~DsavYyCA~~~~   92 (109)
T d1w72l1          70 ATLTISRVEAGDEADYYCQVWDS   92 (109)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEET
T ss_pred             cceEEeeeccCCCEEEEEEecCC
Confidence            47899999999999999988654

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=96.85  E-value=0.0007  Score=40.29  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=20.0

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+.+.
T Consensus        72 ~~L~I~~~~~~Dsa~YyCa~~~~   94 (108)
T d2fx7l1          72 FTLTISRLEPEDFAVYYCQQYGQ   94 (108)
T ss_dssp             EEEEESSCCGGGCSEEEEEECSS
T ss_pred             EEEEehHheecccEEEeeecCCC
Confidence            47999999999999999987643

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.84  E-value=0.00042  Score=41.83  Aligned_cols=23  Identities=22%  Similarity=0.203  Sum_probs=20.1

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        73 ~~L~I~~~~~~Dsg~YyCa~~~~   95 (115)
T d1lp9e1          73 FHLQKSSAQLSDSALYYCALFLA   95 (115)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEEC
T ss_pred             EEeeccccccccCccceEEEEcC
Confidence            46999999999999999987654

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.83  E-value=0.00048  Score=41.49  Aligned_cols=23  Identities=30%  Similarity=0.475  Sum_probs=20.1

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        73 ~~L~I~~~~~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          73 FHMNILDTRRNDSGIYLCGAISL   95 (114)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECS
T ss_pred             EEEEECccCcCCCeEEEEEEEeC
Confidence            35999999999999999988654

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.82  E-value=0.00081  Score=40.29  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=21.1

Q ss_pred             cEEEEcccCCCCCeeeEEEEecCC
Q psy534          105 TELRISNIRSQDIGDYTCLATHVL  128 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~~  128 (145)
                      ..|.|.+++.+|+|.|.|.+....
T Consensus        72 ~~L~i~~~~~~Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          72 STLYIAASQPGDSATYLCAVRPTS   95 (113)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEESS
T ss_pred             EEeeeecCCCCCCcEEeEeEecCC
Confidence            479999999999999999987554

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0011  Score=38.47  Aligned_cols=59  Identities=12%  Similarity=0.054  Sum_probs=40.2

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+.++.+.|+... ....+.++|++.....    .+. .     ......+.|.+|+.+|+|.|+|...
T Consensus        16 ~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~----~~~-~-----~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2          16 ISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV----QRG-Y-----GKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             ETTCEEEEEEECSS-SCSEEEEEEESSSCEE----EEE-E-----CSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             cCCCcEEEEECCCC-CCCEEEEEECCCccce----eec-C-----CCceeEEEecccChhcCceEEEEeE
Confidence            45778889998763 3456888887643111    111 1     1236779999999999999999754

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.81  E-value=0.00098  Score=39.72  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=19.7

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        73 ~~L~I~~l~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          73 YTFTISSLQPEDIATYYCQQYQ   94 (109)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             eEEEEeeceeCcCceEEEeecC
Confidence            4799999999999999998765

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00024  Score=43.02  Aligned_cols=24  Identities=25%  Similarity=0.302  Sum_probs=21.2

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..+|.|.+|+.+|+|.|.|.+..+
T Consensus        82 ~~sL~I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          82 NCTLSIRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEEEECCCChHHCEEEEEEEEeC
Confidence            347999999999999999999754

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.76  E-value=0.00059  Score=40.78  Aligned_cols=22  Identities=18%  Similarity=0.431  Sum_probs=19.5

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        69 ~~L~I~~~~~~Dsa~YyCa~~~   90 (110)
T d2esvd1          69 STLILPHATLRDTAVYYCIVVR   90 (110)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEE
T ss_pred             eeehhcccccCCceEEEEEEeC
Confidence            4699999999999999998754

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.75  E-value=0.00041  Score=41.81  Aligned_cols=23  Identities=17%  Similarity=0.346  Sum_probs=20.5

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        73 ~~L~I~~~~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          73 FHLTKPSAHMSDAAEYFCAVSES   95 (115)
T ss_dssp             CCEEESSCCGGGCEEEEEEEESS
T ss_pred             EEEeeccccccCCccceeeecCC
Confidence            36999999999999999998764

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=96.74  E-value=0.0037  Score=36.50  Aligned_cols=64  Identities=13%  Similarity=0.083  Sum_probs=40.3

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.++.+.||..-. ...+.++|++..... .... ...     ......+.|..+...|+|.|+|....
T Consensus        17 V~~G~~VTL~C~~~~~-~~~f~L~k~g~~~~~-~~~~-~~~-----~~~~~~f~~~~~~~~~~G~Y~C~y~~   80 (99)
T d1nkra2          17 VLAGENVTLSCSSRSS-YDMYHLSREGEAHER-RLPA-GPK-----VNGTFQADFPLGPATHGGTYRCFGSF   80 (99)
T ss_dssp             ECTTCEEEEEEEESSC-CSEEEEEETTCSSCE-EEEC-EEE-----ETTEEEEEEEEEECCSCEEEEEEEEE
T ss_pred             ccCCCeEEEEECCCCC-ccEEEEEECCCcccc-EEEc-ccc-----CCccEEEEEeccccccCEEEEEEeec
Confidence            3567889999987633 346888888743110 0100 011     12245567888889999999997653

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.73  E-value=0.0011  Score=39.86  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=19.6

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|...+.
T Consensus        76 ~~L~I~~~~~eDsAvYYC~~~~~   98 (112)
T d1ncwl1          76 FTLKISRVEAEDLGVYYCWQGTH   98 (112)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSS
T ss_pred             EEEEECccccCcCEeEEEEcCCC
Confidence            47999999999999999965443

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00064  Score=41.08  Aligned_cols=23  Identities=30%  Similarity=0.579  Sum_probs=20.2

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        75 ~~L~I~~l~~~Dsa~YyCa~~~~   97 (118)
T d1i8lc_          75 VNLTIQGLRAMDTGLYICKVELM   97 (118)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEE
T ss_pred             EEEEeeccccCCCEEEEEeEecc
Confidence            47999999999999999987653

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.72  E-value=0.00073  Score=40.57  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=19.5

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        79 ~~L~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          79 PFLSIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             CEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEeecccCCCCCcEEEEeEcC
Confidence            4799999999999999998753

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.72  E-value=0.00082  Score=40.66  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=20.0

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        77 ~~L~i~~~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          77 STLTVTSAHPEDSGFYVCSALAG   99 (118)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECS
T ss_pred             ccccccccccccCceEEEEEecC
Confidence            36999999999999999988643

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.71  E-value=0.0004  Score=41.67  Aligned_cols=23  Identities=17%  Similarity=0.410  Sum_probs=20.1

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        71 ~~L~i~~~~~~Dsa~YyCA~~~~   93 (112)
T d2cdeb1          71 FPLTLESARPSHTSQYLCASSEN   93 (112)
T ss_dssp             CCEEBSSCCTTTCSEEEEEEECS
T ss_pred             eEeeeccccccccccEEEEEecC
Confidence            46999999999999999987654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.70  E-value=0.0019  Score=39.21  Aligned_cols=22  Identities=18%  Similarity=0.375  Sum_probs=19.5

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        82 ~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          82 YVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEE
T ss_pred             eEEEEcccccCCCEEEEeeEeC
Confidence            3699999999999999998763

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.68  E-value=0.0011  Score=39.68  Aligned_cols=25  Identities=20%  Similarity=0.295  Sum_probs=21.1

Q ss_pred             CCcEEEEcccCCCCCeeeEEEEecC
Q psy534          103 DGTELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       103 ~~~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      +...|.|.+++.+|+|.|.|.+...
T Consensus        71 ~~~~L~I~~~~~~Dsa~YyCa~~~~   95 (110)
T d1oaql_          71 NKAALTITGAQTEDEAIYFCALWYS   95 (110)
T ss_dssp             TEEEEEEESCCGGGCEEEEEEEEET
T ss_pred             cceeeecCCCCccccEeEEEEcccC
Confidence            3457999999999999999987653

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.67  E-value=0.00092  Score=39.91  Aligned_cols=22  Identities=27%  Similarity=0.354  Sum_probs=19.7

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        72 ~~L~I~~~~~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          72 LSLHIVPSQPGDSAVYFCAAME   93 (111)
T ss_dssp             EEEEESSCCGGGCEEEEEEEES
T ss_pred             EEEEECCCcccccEEEEeeccC
Confidence            4799999999999999998764

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=96.66  E-value=0.0069  Score=35.11  Aligned_cols=66  Identities=9%  Similarity=0.120  Sum_probs=40.5

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.++.+.|+..-. ...+.++|++..........+..     .......+.|.+|+.+|+|.|+|....
T Consensus        13 V~~G~~VTl~C~~~~~-~~~f~L~keg~~~~~~~~~~~~~-----~~~~~a~F~l~~v~~~~~G~Y~C~y~~   78 (96)
T d1nkra1          13 VKSEETVILQCWSDVM-FEHFLLHREGMFNDTLRLIGEHH-----DGVSKANFSISRMTQDLAGTYRCYGSV   78 (96)
T ss_dssp             EETTCCEEEEEEESSC-CSEEEEEEESSSCEEEEEECEEE-----TTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred             cCCCCcEEEEECCCCC-CCEEEEEECCCcCCceeeeeeec-----CCceEEEEEEcccCcccCeEEEEEEEc
Confidence            3467888999987633 34577777664311101110100     112246789999999999999997753

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.65  E-value=0.00094  Score=39.96  Aligned_cols=22  Identities=18%  Similarity=0.318  Sum_probs=19.5

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        72 ~~L~I~~~~~~DsavYyCA~~~   93 (112)
T d2bnub1          72 FPLRLLSAAPSQTSVYFCASSY   93 (112)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEC
T ss_pred             EEEEECCCCHHHCEEEEEeecC
Confidence            4799999999999999998764

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.63  E-value=0.00091  Score=40.01  Aligned_cols=68  Identities=13%  Similarity=0.093  Sum_probs=39.7

Q ss_pred             HhhhccceeeEEeecCCCccEEEEecCCC---C-----------cccc-cccceEEEecCCCCCCeeeEEEcccCCCCCE
Q psy534            7 VKSIFQMLSVGDFADDEDIPVYIWYDSYP---T-----------HEAE-EYKGRISRVDKESPFGMASLNLTKIRESDQG   71 (145)
Q Consensus         7 ~~~~~~~~~~~~w~~g~p~p~~~w~k~~~---~-----------~~~~-~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G   71 (145)
                      +...+.++.+-|-..+.....+.||+...   +           .... ...+|+...    ...+.+|.|..++.+|++
T Consensus        12 ~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~----~~~~~~l~l~~~~~~dsa   87 (112)
T d1fo0b_          12 LVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLAT----RVTDTELRLQVANMSQGR   87 (112)
T ss_dssp             ECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEE----EEETTEEEEEEESCCSCE
T ss_pred             EECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccc----cccccEEEEecCCccCCc
Confidence            34556677777766644445667776531   0           0000 012233321    112467889999999999


Q ss_pred             EEEEEEE
Q psy534           72 WYECKVV   78 (145)
Q Consensus        72 ~Y~C~~~   78 (145)
                      .|.|...
T Consensus        88 ~Y~Ca~~   94 (112)
T d1fo0b_          88 TLYCTCS   94 (112)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEe
Confidence            9999864

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.63  E-value=0.0014  Score=39.19  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=20.4

Q ss_pred             CcEEEEcccCCCCCeeeEEEEecC
Q psy534          104 GTELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       104 ~~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ...|.|.+++.+|++.|.|.+...
T Consensus        74 ~~~L~I~~~~~~DsA~YyCa~~~~   97 (111)
T d2gsia1          74 DFTLNIHPVEEEDAATYYCSHIRE   97 (111)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECSS
T ss_pred             chhcccccccccCCceEEEEECCC
Confidence            347999999999999999986654

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.62  E-value=0.0014  Score=39.32  Aligned_cols=23  Identities=30%  Similarity=0.629  Sum_probs=19.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.++..+|+|.|.|...+.
T Consensus        77 ~~L~I~~~~~~DsavYyCa~~~~   99 (113)
T d1n4xl_          77 FTLKISRVEAEDLGIYYCFQGSH   99 (113)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSS
T ss_pred             ccCccCCCCcccCEEEEEEECCC
Confidence            47999999999999999975543

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.61  E-value=0.00071  Score=40.44  Aligned_cols=23  Identities=30%  Similarity=0.618  Sum_probs=20.1

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+.+.
T Consensus        74 ~~L~i~~l~~~Dsa~YyCA~~~~   96 (111)
T d1cd0a_          74 ASLTISGLKTEDEADYYCQSYDA   96 (111)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEET
T ss_pred             cccccccCCcccCcEEEEeeccC
Confidence            47999999999999999987653

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.59  E-value=0.001  Score=39.87  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=20.3

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+.+.
T Consensus        75 ~~L~I~~~~~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          75 FTLIIDPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSS
T ss_pred             EEEEEcccccccCccEEEeecCC
Confidence            47999999999999999987654

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.55  E-value=0.0011  Score=39.59  Aligned_cols=22  Identities=14%  Similarity=0.329  Sum_probs=19.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        73 ~~L~i~~~~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          73 FSLILESASTNQTSMYLCASSS   94 (113)
T ss_dssp             CEEEESSCCGGGCEEEEEEEEC
T ss_pred             eeeEeccCccCCcccEEeeEcc
Confidence            4799999999999999998864

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.0011  Score=39.95  Aligned_cols=23  Identities=13%  Similarity=0.261  Sum_probs=19.9

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .+|.|.+++.+|+|.|.|.+...
T Consensus        77 ~~L~I~~l~~~DsavYyCa~~~~   99 (118)
T d1yjdc1          77 VTFYLQNLYVNQTDIYFCKIEVM   99 (118)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEEE
T ss_pred             EEEEECCCCcccCeEEEEEEecc
Confidence            36999999999999999987553

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=96.52  E-value=0.0019  Score=38.72  Aligned_cols=23  Identities=22%  Similarity=0.473  Sum_probs=20.1

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        77 ~~L~I~~l~~~Dsa~YyCA~~~~   99 (113)
T d1q9ra1          77 FTLTITSVQAEDLAVYYCKQSYN   99 (113)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSS
T ss_pred             EeEEecccccCCCeEEEecccCC
Confidence            47999999999999999987653

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.52  E-value=0.00082  Score=40.34  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=19.9

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        74 ~~L~I~~~~~~Dsa~YyCa~~~~   96 (113)
T d1nfdb1          74 SEMNMSALELEDSAMYFCASSLR   96 (113)
T ss_dssp             EEEECCSCCGGGCEEECEEEESS
T ss_pred             EEEEecccCcCCceeEEEEeecC
Confidence            47999999999999999987643

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.51  E-value=0.00086  Score=40.21  Aligned_cols=23  Identities=22%  Similarity=0.254  Sum_probs=20.2

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        73 ~~L~I~~~~~~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          73 IGLIITATQIEDSAVYFCAMRGD   95 (115)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECC
T ss_pred             EEEEECCCCccccccccceeecC
Confidence            46999999999999999987654

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.48  E-value=0.0012  Score=40.16  Aligned_cols=23  Identities=22%  Similarity=0.270  Sum_probs=19.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        79 ~~L~I~~l~~~Dsa~YyCA~~~~  101 (120)
T d1ypzf1          79 SILTIYSLEEEDEAIYYCSYGEG  101 (120)
T ss_dssp             EEEEECSCCGGGCSEEEEEECCT
T ss_pred             ccccccccccccceeEEEEEcCC
Confidence            36999999999999999987643

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=96.48  E-value=0.001  Score=39.96  Aligned_cols=22  Identities=45%  Similarity=0.755  Sum_probs=19.7

Q ss_pred             EEEEcccCCCCCeeeEEEEecC
Q psy534          106 ELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .|.|.+++.+|+|.|.|.+...
T Consensus        67 ~L~I~~l~~~Dsa~YyCa~~~~   88 (113)
T d1vesa_          67 SLRISDLRVEDSGTYKCQAFYS   88 (113)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEE
T ss_pred             eeeecccccCCcceEeeeeecc
Confidence            6999999999999999998653

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0018  Score=37.51  Aligned_cols=20  Identities=20%  Similarity=0.634  Sum_probs=17.7

Q ss_pred             cEEEEcccCCCCCeeeEEEE
Q psy534          105 TELRISNIRSQDIGDYTCLA  124 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a  124 (145)
                      ..+.|.+|+.+|+|.|+|..
T Consensus        54 a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2          54 AEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             EEEEEEECCGGGCEEEEEEC
T ss_pred             eEEEecccChhcCceEEEEe
Confidence            46889999999999999974

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.011  Score=34.21  Aligned_cols=67  Identities=9%  Similarity=0.076  Sum_probs=37.5

Q ss_pred             hhhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.++.+.|+..-. ...+..+|++.... ...   ..............+.|.+|+.+|+|.|+|....
T Consensus        15 v~~G~~VTL~C~~~~~-~~~f~L~k~g~~~~-~~~---~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   81 (98)
T d1ugna2          15 VNSGGNVTLQCDSQVA-FDGFILCKEGEDEH-PQC---LNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD   81 (98)
T ss_dssp             EETTCCEEEEEECSSC-CSEEEEEEC-------CE---EEC------CCEEEEEECCCCTTSCEEEEEEEEC
T ss_pred             cCCCCcEEEEeCCCCC-CCEEEEEECCCcCC-cEe---eeeEEcCCCceEEEEEeeecccCCCeEEEEeeEc
Confidence            3467788888986532 34566677654311 011   0000000012246789999999999999998753

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.34  E-value=0.0016  Score=38.79  Aligned_cols=23  Identities=17%  Similarity=0.304  Sum_probs=20.0

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.++..+|+|.|.|.+...
T Consensus        72 ~~L~i~~~~~~Dsa~YyCA~~~~   94 (110)
T d1ac6a_          72 FHLQKASVQESDSAVYYCALSGG   94 (110)
T ss_dssp             CCEEEEEECGGGCEEEEEEEEET
T ss_pred             EeeeecCcCcCCCcccceeecCC
Confidence            46999999999999999987654

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.0026  Score=38.12  Aligned_cols=22  Identities=32%  Similarity=0.563  Sum_probs=19.8

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        75 ~~L~I~~l~~~Dsa~YyCa~~~   96 (117)
T d1dqta_          75 VNLTIQGLRAVDTGLYLCKVEL   96 (117)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEhhcCccccCEeEEEEEec
Confidence            4799999999999999998764

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.27  E-value=0.002  Score=38.36  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=20.1

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        69 ~~L~I~~l~~~Dsa~YyCA~~~~   91 (108)
T d1nfde1          69 ATLTISGAQPEDEAAYYCLSSYG   91 (108)
T ss_dssp             EEEEETTCCGGGCSEEEEEEEET
T ss_pred             eeeeEcCccccCCceEEEEeecC
Confidence            47999999999999999987643

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0034  Score=36.37  Aligned_cols=25  Identities=20%  Similarity=0.430  Sum_probs=22.3

Q ss_pred             CCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           55 FGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        55 ~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+++|+|.++.++|+|.|.-.+..
T Consensus        60 ~~nGtLkIK~L~~~d~GtYkv~vYd   84 (101)
T d1hnfa1          60 FKNGTLKIKHLKTDDQDIYKVSIYD   84 (101)
T ss_dssp             CTTSCEEECSCCGGGCEEEEEEEEE
T ss_pred             ccCCcEEeeeeeecCCCcEEEEEEc
Confidence            3499999999999999999998864

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.19  E-value=0.0029  Score=37.80  Aligned_cols=22  Identities=23%  Similarity=0.643  Sum_probs=19.0

Q ss_pred             EEEEcccCCCCCeeeEEEEecC
Q psy534          106 ELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .|+|.+++.+|+|.|.|.....
T Consensus        73 ~lti~~L~~eDsa~YyCa~~~~   94 (110)
T d1u9ka_          73 QVQMTDLQVTDSGLYRCVIYHP   94 (110)
T ss_dssp             EEEECSCCGGGCEEEEEEEECT
T ss_pred             EEEECccccCCCEEEEEEEeCC
Confidence            5899999999999999987443

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.19  E-value=0.0018  Score=38.68  Aligned_cols=22  Identities=18%  Similarity=0.350  Sum_probs=19.2

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        69 ~~L~i~~~~~~Dsa~YyCa~~~   90 (112)
T d1kgcd1          69 STLILHRATLRDAAVYYCILPL   90 (112)
T ss_dssp             EEEEESSCCGGGCEEEEEECCC
T ss_pred             eEEEEeecccccceeEeeeEec
Confidence            3699999999999999998654

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0022  Score=37.28  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=19.3

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..+.|.+|+.+|+|.|+|.-..
T Consensus        57 a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1          57 GQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             TEEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEEEecCHHHCCeEEEEEeC
Confidence            4789999999999999998653

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.17  E-value=0.0084  Score=34.04  Aligned_cols=72  Identities=17%  Similarity=0.165  Sum_probs=43.3

Q ss_pred             hhhccceeeEEeec-CCCccEEEEecCCCCc-ccccccceEEEec-CCCCCCeeeEEEcccCCCCCEEEEEEEEE
Q psy534            8 KSIFQMLSVGDFAD-DEDIPVYIWYDSYPTH-EAEEYKGRISRVD-KESPFGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus         8 ~~~~~~~~~~~w~~-g~p~p~~~w~k~~~~~-~~~~~~~R~~~~~-~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      +.-+.|..+-|-.+ ..-.|.++|-|-++.. ...++.-..+... ......-..|.+..+-.+|.|.|+|.+.+
T Consensus        15 ~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf   89 (104)
T d1xaua_          15 AWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNF   89 (104)
T ss_dssp             ECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             EecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCC
Confidence            34455666667766 5567889997765431 1122211111111 11223356688889999999999999965

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.13  E-value=0.0036  Score=37.38  Aligned_cols=21  Identities=43%  Similarity=0.819  Sum_probs=18.4

Q ss_pred             cEEEEcccCCCCCeeeEEEEe
Q psy534          105 TELRISNIRSQDIGDYTCLAT  125 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~  125 (145)
                      ..|.|.+++.+|++.|.|...
T Consensus        76 ~~L~Is~~~~~DsAvYyCa~~   96 (112)
T d1mjul1          76 FTLRISRVEAEDVGVYYCLQH   96 (112)
T ss_dssp             EEEEESSCCGGGCEEEEEEEC
T ss_pred             EEEEECCccccCCceEEEEeC
Confidence            469999999999999999544

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=96.07  E-value=0.0058  Score=35.76  Aligned_cols=65  Identities=18%  Similarity=0.147  Sum_probs=36.9

Q ss_pred             hccceeeEEeecCC-C-ccEEEEecCCCCcccccccceEEEecCCCCCCeeeEE---EcccCCCCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFADDE-D-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLN---LTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~g~-p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~---I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+....++|.+.|. | ...+.|++++.... ..........     .++++..   ...+..+|.+.|.|++.+.
T Consensus        16 ~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~-~~~~~t~~~~-----~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   85 (100)
T d1muja1          16 LGQPNTLICFVDNIFPPVINITWLRNSKSVA-DGVYETSFFV-----NRDYSFHKLSYLTFIPSDDDIYDCKVEHW   85 (100)
T ss_dssp             TTSCEEEEEEEEEECSSCCEEEEEESSSBCC-SSEEECCCEE-----CTTSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred             cCCCEEEEEEEEeEECCCCEEEEEeCCeecc-CCceeeeeEE-----CCCCCEEEEEEeEEcCCCCCEEEEEEEEC
Confidence            45667899999974 4 56799999985422 2211111111     1222211   2234456777899999853

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0037  Score=36.46  Aligned_cols=22  Identities=14%  Similarity=0.188  Sum_probs=18.6

Q ss_pred             EEEEcccCCCCCeeeEEEEecC
Q psy534          106 ELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ...|.+|+.+|+|.|+|.-...
T Consensus        61 ~F~l~~v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2          61 IFSVGPVSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             EEEECCCCTTSCEEEEEEEECT
T ss_pred             EEEeeecccCCCeEEEEeeEcC
Confidence            5889999999999999976443

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=95.94  E-value=0.0047  Score=36.03  Aligned_cols=68  Identities=9%  Similarity=0.081  Sum_probs=36.7

Q ss_pred             hhccceeeEEeecCC-C-ccEEEEecCCCCcccccccceEEEecCCCCCC-eeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDE-D-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFG-MASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~-p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ....++.++|.+.|. | ...+.|++++............ ....|.... ...|.   |..++...|.|++.+.
T Consensus        15 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~-~~~~dgty~~~s~L~---v~~~~~~~ytC~V~H~   85 (98)
T d1hdmb1          15 NTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTA-QPNGDWTYQTLSHLA---LTPSYGDTYTCVVEHI   85 (98)
T ss_dssp             SSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCC-EECSSSCEEEEEEEE---ECCCTTCCEEEEEECT
T ss_pred             cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCce-EECCCCCEEEEEEeE---cCCCCCCEEEEEEEeC
Confidence            345567889999985 4 5678999988532211111111 111111111 12233   4456666899999763

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.016  Score=34.02  Aligned_cols=70  Identities=10%  Similarity=-0.036  Sum_probs=38.1

Q ss_pred             hhccceeeEEeec-CCCc--cEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCE-EEEEEEEEec
Q psy534            9 SIFQMLSVGDFAD-DEDI--PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQG-WYECKVVFLN   81 (145)
Q Consensus         9 ~~~~~~~~~~w~~-g~p~--p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G-~Y~C~~~~~~   81 (145)
                      ..+.++.+.|-+. +.|.  +.+.||+++.............  ..........|.+. ++++|.| .|+|+|.+..
T Consensus        14 ~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~--~~~~~~~~s~l~~~-~~~~D~g~~ltC~a~~~~   87 (109)
T d1vcaa1          14 EAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDAD--RKSLETKSLEVTFT-PVIEDIGKVLVCRAKLHI   87 (109)
T ss_dssp             ETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCS--SCCCEEEEEEEEEC-CCGGGTTCEEEEEEEECS
T ss_pred             cCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccc--cCCcceeeEEEEcc-CChHHCCcEEEEEEEcCc
Confidence            4577888999888 5674  3789999875321111100000  00000013445555 4455555 8999998754

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0063  Score=35.57  Aligned_cols=65  Identities=9%  Similarity=-0.053  Sum_probs=38.3

Q ss_pred             hhccceeeEEeecCC-C-ccEEEEecCCCCcccccccceEEEecCCCCCCeeeEE---EcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDE-D-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLN---LTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~-p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~---I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+....++|.+.|. | ...+.|.+++... ..........      .++++..   ...+..+|.+.|.|++.+.
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v-~~~~~~~~~~------~~dgty~~~s~l~v~~~~~~~ytC~V~H~   86 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSF------SKDWSFYLLYYTEFTPTEKDEYACRVNHV   86 (100)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEEC-TTCEECCCEE------CTTSCEEEEEEEEECCCSSCCEEEEEECT
T ss_pred             cCCCCEEEEEEECccCCCCcEEEEEECCEec-CCccccceec------CCCCcEEEEEEeEECCCCCCEEEEEEEeC
Confidence            445667889999985 4 4478999987532 2111111111      2233322   2345567788999999763

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.72  E-value=0.0052  Score=36.54  Aligned_cols=24  Identities=17%  Similarity=0.267  Sum_probs=21.0

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|.|.+....+
T Consensus        75 ~L~I~~~~~~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          75 NFTITASQVVDSAVYFCALSGFYN   98 (114)
T ss_dssp             EEEESSCCGGGCEEEEEEEECSBT
T ss_pred             EEeecccccccCCCceEeCCCCCC
Confidence            699999999999999998776543

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.027  Score=31.25  Aligned_cols=58  Identities=12%  Similarity=0.212  Sum_probs=36.2

Q ss_pred             hhhccceeeEEeecCC--CccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            8 KSIFQMLSVGDFADDE--DIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         8 ~~~~~~~~~~~w~~g~--p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      .+.+.++.+.|--...  +.....|.|++.. +.+.          ......-...|..  .+|+|.|.|.+.
T Consensus         9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkv-l~ed----------~~~~~~tey~V~~--~D~SGeY~CVFl   68 (80)
T d3b5ha2           9 EDLGSKILLTCSLNDSATEVTGHRWLKGGVV-LKED----------ALPGQKTEFKVDS--DDQWGEYSCVFL   68 (80)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEESSSEE-EECT----------TCCCSEEEEEECG--GGCCEEEEEEEE
T ss_pred             ccCCCCEEEEEECCCCCCceeeeEEeeCCEE-cccc----------CCCCCceEEEEec--CCCCceEEEEEc
Confidence            3456666777776543  4556789999853 2221          1112244566654  889999999964

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.54  E-value=0.0072  Score=35.13  Aligned_cols=67  Identities=10%  Similarity=0.035  Sum_probs=37.1

Q ss_pred             hhccceeeEEeecCC-C-ccEEEEecCCCCcccccccceEEEecCCCCCC-eeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDE-D-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFG-MASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~-p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.+..++|.+.|. | ...+.|++++........ ... ....+.... ...|   .+..+|.+.|.|++.+.
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~-~~~-~~~~dgtf~~~s~l---~v~~~~~~~ytC~V~H~   85 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEM-SDM-SFSKDWSFYILAHT---EFTPTETDTYACRVKHD   85 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEE-EEE-EECTTCCEEEEEEE---EECCCSSCCEEEEEECT
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEE-Cce-eECCCCCEEEEEEe---EecCcCCCEEEEEEEeC
Confidence            345667899999974 4 447899999854222111 111 111111111 2223   34556777899999753

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=95.50  E-value=0.012  Score=34.22  Aligned_cols=19  Identities=16%  Similarity=0.321  Sum_probs=15.9

Q ss_pred             EEEcccCCCCCeeeEEEEe
Q psy534          107 LRISNIRSQDIGDYTCLAT  125 (145)
Q Consensus       107 L~i~~v~~~d~G~Y~C~a~  125 (145)
                      ..|..+...|+|.|+|.-.
T Consensus        61 f~~~~~~~~~~G~Y~C~y~   79 (99)
T d1nkra2          61 ADFPLGPATHGGTYRCFGS   79 (99)
T ss_dssp             EEEEEEECCSCEEEEEEEE
T ss_pred             EEEeccccccCEEEEEEee
Confidence            5778888899999999754

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=95.44  E-value=0.01  Score=34.63  Aligned_cols=67  Identities=15%  Similarity=0.176  Sum_probs=35.2

Q ss_pred             hccceeeEEeecCC-C-ccEEEEecCCCCcccccccceEEEecCCCCCC-eeeEEEcccCCCCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFADDE-D-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFG-MASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~g~-p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ++.+..++|.+.|. | ...+.|++++.. +.............+.... ...|.+   ..++...|.|++.+.
T Consensus        18 ~~~~~tL~C~v~gF~P~~i~v~W~~ng~~-~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~   87 (101)
T d1fnga1          18 LGEPNILICFIDKFSPPVVNVTWLRNGRP-VTEGVSETVFLPRDDHLFRKFHYLTF---LPSTDDFYDCEVDHW   87 (101)
T ss_dssp             TTSCEEEEEEEEEEBSSCCEEEEEETTEE-ECSSEEECCCEECSSSCEEEEEEEEE---CCCTTCCEEEEEECT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCee-cCCCcEeCeEEECCCCcEEEEEEeEE---cCCCCCEEEEEEEEC
Confidence            44556789999975 5 447999998753 2221111001111111111 223333   445566899999753

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=95.44  E-value=0.019  Score=33.17  Aligned_cols=65  Identities=8%  Similarity=-0.023  Sum_probs=35.1

Q ss_pred             hccceeeEEeecCC-C-ccEEEEecCCCCcccccccceEEEecCCCCCCeeeE---EEcccCCCCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFADDE-D-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASL---NLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~g~-p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL---~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +.....++|.+.|. | ...+.|++++.........+- ...     .++++.   ....+..+|...|.|++.+.
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~-~~~-----~~dgtf~~~s~l~~~~~~~~~ytC~V~H~   86 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTG-LIQ-----NGDWTFQTLVMLETVPRSGEVYTCQVEHP   86 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECC-CEE-----CSSSCEEEEEEEECCCCTTCEEEEEEECT
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECe-EEe-----CCCcEEEEEEEeeEcCCCCCEEEEEEEEC
Confidence            44556789999974 4 457999998743211111111 111     122222   22355677888999999753

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=95.41  E-value=0.013  Score=34.39  Aligned_cols=67  Identities=13%  Similarity=0.086  Sum_probs=37.0

Q ss_pred             hhccceeeEEeecCC-C-ccEEEEecCCCCcccccccceEEEecCCCCCC-eeeEEEcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDE-D-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFG-MASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~-p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .++.+..++|++.|- | ...+.|.+++.. +.......... ..+.... ...|.   +..+|...|.|++.+.
T Consensus        16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~-~~~~~~~~~~~-~~dgty~~~S~L~---v~~~~~~~ytC~V~H~   85 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVP-VEGFGPTFVSA-VDGLSFQAFSYLN---FTPEPSDIFSCIVTHE   85 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEE-CSSCCCEEEEE-ETTTEEEEEEEEE---ECCCTTCCEEEEEEET
T ss_pred             hcCCCeEEEEEEeeEECCCCEEEEEECCee-cCCcEeceEEe-CCCCcEEEEEEEE---EecCCCCEEEEEEEeC
Confidence            356677899999984 5 456899998753 22222211111 1111111 22333   3455666799999764

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0069  Score=35.12  Aligned_cols=23  Identities=13%  Similarity=0.245  Sum_probs=19.3

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ....|.+++.+|+|+|+|.-...
T Consensus        56 a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          56 ANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             EEEECCSCCGGGCEEEEEEEECT
T ss_pred             cEEEEeccccccCcEEEEEEEcC
Confidence            46888999999999999986543

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.013  Score=33.81  Aligned_cols=66  Identities=11%  Similarity=0.148  Sum_probs=35.8

Q ss_pred             ceeeEEeecC-CCcc-EEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           13 MLSVGDFADD-EDIP-VYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        13 ~~~~~~w~~g-~p~p-~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...++|.+.| .|.. .+.|++++..........--.....+.  .-.......+..+|...|.|++.+.
T Consensus        17 ~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~--t~~~~s~l~v~~~~~~~ytC~V~H~   84 (94)
T d1de4a1          17 VTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDG--TYQGWITLAVPPGEEQRYTCQVEHP   84 (94)
T ss_dssp             CEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTS--CEEEEEEEEECTTCGGGEEEEEECT
T ss_pred             CEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCc--eEEEEEEEEECCCCCCEEEEEEEeC
Confidence            4578899998 4544 799999985432222221111111111  1111122345566777899999764

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=95.30  E-value=0.013  Score=34.94  Aligned_cols=24  Identities=33%  Similarity=0.409  Sum_probs=20.9

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|.|.+....+
T Consensus        77 ~L~I~~~~~~Dsg~YyCa~~~~~~  100 (116)
T d1tvda_          77 HLVISPVRTEDSATYYCAFTLPPP  100 (116)
T ss_dssp             EEEESSCCGGGCEEEEEEEECTTT
T ss_pred             eeeecCccccccccceeeEecCCC
Confidence            699999999999999998776544

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.049  Score=31.10  Aligned_cols=62  Identities=10%  Similarity=0.131  Sum_probs=35.3

Q ss_pred             ceeeEEeecC-CCccEEEEecCCCCcccccccceEEEecC-CCCCC-eeeEEEcccCCCCCEEEEEEEEEe
Q psy534           13 MLSVGDFADD-EDIPVYIWYDSYPTHEAEEYKGRISRVDK-ESPFG-MASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        13 ~~~~~~w~~g-~p~p~~~w~k~~~~~~~~~~~~R~~~~~~-~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      .+.++|.+.| .|.+.+.|++++........   .....+ +.... ...|.+   ...+...|.|.+.+.
T Consensus        18 ~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~---~~~~~~~~g~y~v~S~L~v---~~~~~~~~tC~V~h~   82 (95)
T d1dr9a2          18 IRRIICSTSGGFPEPHLSWLENGEELNAINT---TVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYG   82 (95)
T ss_dssp             EEEEEEEEEEESSCEEEEEEESSCEECCSEE---EEEECTTTCCEEEEEEEEE---ETTSCEEEEEEEEET
T ss_pred             EEEEEEEECcccCCCEEEEecCCcEecccce---eeEecCCCccEEEEEEEEc---cCCccceEEEEEEec
Confidence            3568899986 69999999998754221111   111111 01111 233444   345677999999753

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.012  Score=34.05  Aligned_cols=62  Identities=15%  Similarity=0.197  Sum_probs=38.0

Q ss_pred             hhccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEE
Q psy534            9 SIFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVV   78 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~   78 (145)
                      ..+.++.+.|+.. .+...+..||++....   ...+... .   ......+.|.+|+.+|+|.|+|...
T Consensus        16 ~~G~~VTL~C~~~-~~~~~f~L~keg~~~~---~~~~~~~-~---~~~~a~F~i~~v~~~~~G~Y~C~y~   77 (96)
T d1ugna1          16 TQGSPVTLRCQGG-QETQEYRLYREKKTAP---WITRIPQ-E---LVKKGQFPIPSITWEHTGRYRCYYG   77 (96)
T ss_dssp             ETTCCEEEEEECC-TTCCCEEEEESSSCCH---HHHTSCH-H---HHTTTEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCcEEEEEeCC-CCCCEEEEEECCCCcc---cEEEccC-C---CCCEEEEEEEecCHHHCCeEEEEEe
Confidence            4677888888764 2234566777664210   0000000 0   0125678999999999999999864

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=95.00  E-value=0.005  Score=35.73  Aligned_cols=21  Identities=24%  Similarity=0.532  Sum_probs=18.2

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .+.|.+|+.+|+|.|.|.-..
T Consensus        58 ~F~l~~v~~~~~G~Y~C~y~~   78 (96)
T d1nkra1          58 NFSISRMTQDLAGTYRCYGSV   78 (96)
T ss_dssp             EEEESSCCGGGCEEEEEEEEB
T ss_pred             EEEEcccCcccCeEEEEEEEc
Confidence            488999999999999997643

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=94.96  E-value=0.0074  Score=35.95  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=20.2

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        65 ~~L~I~~l~~~Dsa~YyCA~~~~   87 (112)
T d1sq2n_          65 FSLRINDLTVEDGGTYRCGLGVA   87 (112)
T ss_dssp             EEEEECSCCGGGCEEEEEEECBT
T ss_pred             eeeEecCCcCccCEEEeEEEecC
Confidence            37999999999999999987654

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=94.95  E-value=0.01  Score=35.73  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=19.7

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..|.|.+++.+|+|.|.|....
T Consensus        75 ~~L~i~~~~~~Dsa~YyCA~~~   96 (120)
T d1hxma1          75 AVLKILAPSERDEGSYYCACDT   96 (120)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEC
T ss_pred             eecccccccccCCceeecCccc
Confidence            4799999999999999998655

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=94.91  E-value=0.017  Score=33.53  Aligned_cols=66  Identities=14%  Similarity=0.095  Sum_probs=36.1

Q ss_pred             hhccceeeEEeecCC-C-ccEEEEecCCCCcccccccceEEEecCCCCCCeeeEE---EcccCCCCCEEEEEEEEEe
Q psy534            9 SIFQMLSVGDFADDE-D-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLN---LTKIRESDQGWYECKVVFL   80 (145)
Q Consensus         9 ~~~~~~~~~~w~~g~-p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~---I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+....++|.+.|- | ...+.|.+++..........-. . .    .++++..   ...+..+|...|.|++.+.
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~-~-~----~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   87 (99)
T d1uvqa1          17 TLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSF-L-S----KSDHSFFKISYLTFLPSADEIYDCKVEHW   87 (99)
T ss_dssp             CTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCC-E-E----CTTSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred             cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecce-E-E----CCCCCEEEEEEEEEcCCCCCEEEEEEEeC
Confidence            345667799999974 4 4568999987542211111111 1 1    1122211   1234456667899999753

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.90  E-value=0.014  Score=35.23  Aligned_cols=22  Identities=27%  Similarity=0.320  Sum_probs=18.7

Q ss_pred             EEEEcccCCCCCeeeEEEEecC
Q psy534          106 ELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .|.|.+++.+|++.|.|.....
T Consensus        80 ~L~i~~L~~eDsAvYYCA~~~~  101 (119)
T d1qnzh_          80 YLEFSRLTSDDSAVYYCAIHYG  101 (119)
T ss_dssp             EEEEEEECGGGCEEEEEEECSS
T ss_pred             eeeecccCccceeEEEEEEecC
Confidence            4899999999999999965443

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.89  E-value=0.0035  Score=36.34  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=21.3

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|+|.|.|.+....|
T Consensus        65 ~L~I~~~~~~Dsa~YyCA~~~~~g   88 (96)
T d1ymmd1          65 SLLITASRAADTASYFCATDTTSG   88 (96)
T ss_dssp             CBCCSSCCSTTCSCCEEEEEETTS
T ss_pred             ccCcCCCCcccCEEEeEeEecCCC
Confidence            699999999999999998876655

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=94.84  E-value=0.027  Score=34.54  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=25.1

Q ss_pred             EEEEcccCCCCCeeeEEEEecCC-------CCcEEEEeCe
Q psy534          106 ELRISNIRSQDIGDYTCLATHVL-------YPDLLVVLGS  138 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~-------g~~~~v~~~~  138 (145)
                      .|.|.+++.+|++.|+|......       |..|+|.+.+
T Consensus        80 yL~i~~L~~eDTAvYYCAr~~~~~~d~WGqGT~VTVsSas  119 (135)
T d1ieha_          80 YLQMNSLKSEDTAVYYCAKYSGGALDAWGQGTQVTVSSQS  119 (135)
T ss_dssp             EEEEESCCSSSCEEEEEEEBSSSSBCCCSCCEEEEECSSC
T ss_pred             EecEeeeCcccceeeEEEEecCCccceeCCCEEEEEECCC
Confidence            58999999999999999765432       2667776654

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.65  E-value=0.017  Score=34.77  Aligned_cols=23  Identities=35%  Similarity=0.577  Sum_probs=19.5

Q ss_pred             EEEEcccCCCCCeeeEEEEecCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVL  128 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~  128 (145)
                      .|.|.+++.+|++.|+|......
T Consensus        80 ~L~~~sL~~eDtAvYYCAr~~~~  102 (118)
T d2fbjh1          80 YLQMSKVRSEDTALYYCARLHYY  102 (118)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETT
T ss_pred             eccccccCCCcceEEEeeEecCC
Confidence            48999999999999999876643

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.55  E-value=0.014  Score=34.87  Aligned_cols=29  Identities=24%  Similarity=0.318  Sum_probs=21.8

Q ss_pred             EEEEcccCCCCCeeeEEEEec----CCCCcEEE
Q psy534          106 ELRISNIRSQDIGDYTCLATH----VLYPDLLV  134 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n----~~g~~~~v  134 (145)
                      .|.|.+++.+|++.|+|....    +.|..|+|
T Consensus        80 ~L~~~~L~~eDtAvYYCA~~~~dyWGqGT~VTV  112 (114)
T d1indh1          80 YLQLNSLRSEDTALYFCASHRFVHWGHGTLVTV  112 (114)
T ss_dssp             EEEECSCCGGGCEEEEEECGGGCSBCCCEEEEE
T ss_pred             eeeeeeeccCcccEEEECCCCCCccCCCEEEEE
Confidence            489999999999999996543    22355555

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.49  E-value=0.022  Score=34.48  Aligned_cols=21  Identities=29%  Similarity=0.605  Sum_probs=18.4

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.+++.+|++.|+|....
T Consensus        80 ~L~i~~L~~eDtAvYYCAr~~  100 (123)
T d1mqkh_          80 YLQMSSLKSEDTAMYYCVRHE  100 (123)
T ss_dssp             EEEECSCCGGGCEEEEEEEEE
T ss_pred             ccceeeeccCcccceeEEecC
Confidence            489999999999999997654

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.47  E-value=0.017  Score=34.68  Aligned_cols=23  Identities=26%  Similarity=0.431  Sum_probs=19.7

Q ss_pred             EEEEcccCCCCCeeeEEEEecCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVL  128 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~  128 (145)
                      .|.|.+++.+|++.|+|......
T Consensus        80 ~L~i~~L~~eDtAvYYCA~~~~~  102 (117)
T d1iqdb1          80 YMELSSLRSDDTAVYYCAVPDPD  102 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEECSSS
T ss_pred             EEeecccCcCcceEEEEeEcCCC
Confidence            48999999999999999876543

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.47  E-value=0.026  Score=33.11  Aligned_cols=24  Identities=21%  Similarity=0.329  Sum_probs=17.2

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|++.|.|......+
T Consensus        67 ~L~~~sL~~eDTAvYYCAr~~~~~   90 (103)
T d1oari_          67 YMQLSSLTSEDSAVYYCARMWYYG   90 (103)
T ss_dssp             EEEECCC---CCSEEEEEEEECSS
T ss_pred             EeeeeeccccccEEEEeEEECCCC
Confidence            589999999999999997655544

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.36  E-value=0.037  Score=33.17  Aligned_cols=18  Identities=28%  Similarity=0.689  Sum_probs=16.5

Q ss_pred             EEEEcccCCCCCeeeEEE
Q psy534          106 ELRISNIRSQDIGDYTCL  123 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~  123 (145)
                      .|.|.+++.+|++.|+|.
T Consensus        80 yL~~~~L~~eDtAvYYCA   97 (118)
T d1nlbh1          80 YLQINSLKNEDTATYFCA   97 (118)
T ss_dssp             EEEECSCCGGGCEEEEEE
T ss_pred             EeeeeecccCcceEEEEe
Confidence            489999999999999994

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.27  E-value=0.026  Score=31.96  Aligned_cols=66  Identities=12%  Similarity=0.076  Sum_probs=34.5

Q ss_pred             ccceeeEEeecCC-C-ccEEEEecCCCCcccccccceEEEecCCCCCC-eeeEEEcccCCCCCEEEEEEEEEe
Q psy534           11 FQMLSVGDFADDE-D-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFG-MASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        11 ~~~~~~~~w~~g~-p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++|.+.|. | ...+.|.+++.............. ..+.... ...|.|.   .+|...|.|++.+.
T Consensus        15 ~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~-~~~gt~~~~s~l~v~---~~~~~~ytC~V~H~   83 (89)
T d2mhaa1          15 EDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRP-AGDGTFQKWASVVVP---LGKEQYYTCHVYHQ   83 (89)
T ss_dssp             SSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEE-CSSSCEEEEEEEEEE---SSTTTTCEEEEECS
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEec-CCCCcEEEEEEEEec---CcCCCEEEEEEEEC
Confidence            3467899999985 4 346899998753221111111111 1111111 2334443   44555799999753

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.25  E-value=0.025  Score=33.93  Aligned_cols=21  Identities=24%  Similarity=0.547  Sum_probs=18.0

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.+.+++.+|++.|+|....
T Consensus        80 yL~m~~L~~eDTAvYYCAr~~  100 (117)
T d1jpth1          80 YLQMNSLRAEDTAVYYCARDT  100 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             EecccccCCCCceEEEEeecC
Confidence            488999999999999996543

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.22  E-value=0.021  Score=34.26  Aligned_cols=21  Identities=19%  Similarity=0.491  Sum_probs=18.3

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.+++.+|++.|+|....
T Consensus        79 ~L~~~sL~~eDtAvYYCAr~~   99 (117)
T d1c5db1          79 FLKMNSLQTEDTAIYFCTRED   99 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEECC
T ss_pred             eccccccccCcceEEEEeccC
Confidence            589999999999999996553

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.16  E-value=0.028  Score=33.84  Aligned_cols=22  Identities=18%  Similarity=0.430  Sum_probs=19.0

Q ss_pred             EEEEcccCCCCCeeeEEEEecC
Q psy534          106 ELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .|.|.+++.+|++.|.|.....
T Consensus        78 ~L~i~~L~~eDtA~YYCAr~~~   99 (119)
T d1kxvc_          78 YLQMDSLKPDDTAMYYCKPSLR   99 (119)
T ss_dssp             EEEECSCCGGGCEEEEEEEEES
T ss_pred             ecccccCCcCCcceEeeeeccc
Confidence            5899999999999999976543

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=94.14  E-value=0.029  Score=33.61  Aligned_cols=22  Identities=27%  Similarity=0.570  Sum_probs=18.6

Q ss_pred             EEEEcccCCCCCeeeEEEEecC
Q psy534          106 ELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .|.|.+++.+|++.|.|.....
T Consensus        79 ~L~i~~L~~eDtAvYyCAr~~~  100 (116)
T d7fabh1          79 SLRLSSVTAADTAVYYCARNLI  100 (116)
T ss_dssp             EEEECSCCGGGCEEEEEEEECS
T ss_pred             hccccccccccceEEEeeeecC
Confidence            5899999999999999975433

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.06  E-value=0.028  Score=34.16  Aligned_cols=21  Identities=19%  Similarity=0.382  Sum_probs=18.1

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.+++.+|++.|+|....
T Consensus        80 yL~l~sL~~eDtAvYYCAR~~  100 (125)
T d1rihh1          80 FMYLNSLTSEDSAVYYCARES  100 (125)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             eeeeeccCcccceEEEEeeeC
Confidence            488999999999999997543

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.88  E-value=0.038  Score=33.49  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=18.1

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.+++.+|++.|+|....
T Consensus        80 ~Lqm~sL~~eDTAvYYCAr~~  100 (125)
T d1op3h1          80 YLQMHKMRVEDTAIYYCARKG  100 (125)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             eeeeeccCCccceeEeEeecc
Confidence            488999999999999997543

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=93.87  E-value=0.042  Score=31.59  Aligned_cols=65  Identities=11%  Similarity=0.042  Sum_probs=33.7

Q ss_pred             hccceeeEEeecCC-C-ccEEEEecCCCCcccccccceEEEecCCCCCCeeeE---EEcccCCCCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFADDE-D-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASL---NLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~g~-p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL---~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +..+..++|-+.|. | ...+.|.+++............ ..     .++++.   ....+..++...|.|++.+.
T Consensus        15 ~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~-~~-----~~dgty~~~s~l~v~~~~~~~ytC~V~H~   84 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPL-IR-----NGDWTFQILVMLEMTPQRGDVYTCHVEHP   84 (97)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCC-EE-----CSSSCEEEEEEEECCSCTTCCEEEEEECT
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEecee-ec-----CCCceEEEEEEeccCCCCCCEEEEEEEeC
Confidence            34556789999874 4 4678999987432211111111 11     112221   12244566777999999753

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.79  E-value=0.032  Score=33.62  Aligned_cols=21  Identities=19%  Similarity=0.390  Sum_probs=18.2

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.+++.+|++.|.|....
T Consensus        80 ~L~i~~l~~eDtA~YYCAr~~  100 (120)
T d1pg7x1          80 YIELVRLTSNDSAVYYCARED  100 (120)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             EccccccCCCcceEEEeeecC
Confidence            489999999999999997543

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=93.76  E-value=0.08  Score=30.97  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=19.0

Q ss_pred             cEEEEcccCCCCCeeeEEEEec
Q psy534          105 TELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      ..|.|..+..+|++.|.|.+..
T Consensus        74 ~~l~l~~~~~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          74 TELRLQVANMSQGRTLYCTCSA   95 (112)
T ss_dssp             TEEEEEEESCCSCEEEEEEEES
T ss_pred             cEEEEecCCccCCccEEEEEec
Confidence            4799999999999999998643

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.65  E-value=0.033  Score=33.49  Aligned_cols=21  Identities=38%  Similarity=0.607  Sum_probs=18.3

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.+++.+|++.|+|....
T Consensus        80 yLqm~sL~~eDTAvYYCAr~~  100 (119)
T d1rz7h1          80 YLELSSLRSEDTAVYYCAADP  100 (119)
T ss_dssp             EEEECSCCGGGCEEEEEEECT
T ss_pred             EeeeeccCcccceEEEEeecC
Confidence            488999999999999997654

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=93.64  E-value=0.023  Score=33.52  Aligned_cols=21  Identities=19%  Similarity=0.453  Sum_probs=18.3

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.+++.+|++.|.|....
T Consensus        72 ~L~i~~l~~eDtAvYyCA~~~   92 (107)
T d1sjva_          72 YLEMNSLEPEDTAVYYCYTHY   92 (107)
T ss_dssp             EEEECSCCGGGCSEEEEEECC
T ss_pred             EEeecCCCcccceeeeEeccC
Confidence            589999999999999996543

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=93.64  E-value=0.022  Score=34.32  Aligned_cols=21  Identities=38%  Similarity=0.615  Sum_probs=18.6

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.++..+|+|.|.|.+..
T Consensus        81 ~L~i~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          81 TLTIHNVEKQDIATYYCALWE  101 (123)
T ss_dssp             EEEECSCCGGGCEEEEEEEEE
T ss_pred             eecccccccccCcEEEEeeeC
Confidence            699999999999999998643

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=93.63  E-value=0.026  Score=32.47  Aligned_cols=64  Identities=14%  Similarity=0.216  Sum_probs=35.0

Q ss_pred             cceeeEEeecC-CCcc-EEEEecCCCCcccccccceEEEecCCCCCC-eeeEEEcccCCCCCEEEEEEEEEe
Q psy534           12 QMLSVGDFADD-EDIP-VYIWYDSYPTHEAEEYKGRISRVDKESPFG-MASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        12 ~~~~~~~w~~g-~p~p-~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.++|.+.| .|.. .+.|++++..... ...... ....+.... ...|.|.   .+|...|.|++.+.
T Consensus        17 ~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~-~~~~~~-~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~   83 (96)
T d2h26a1          17 GRLQLVCHVSGFYPKPVWVMWMRGEQEQQG-TQLGDI-LPNANWTWYLRATLDVA---DGEAAGLSCRVKHS   83 (96)
T ss_dssp             TEEEEEEEEEEEBSSCEEEEEEETTEECTT-CEECCC-EECTTSCEEEEEEEEEE---GGGCTTEEEEEEEG
T ss_pred             CeEEEEEEEEEEECCCcEEEEEECcccCCC-ceeCcc-EeCCCCcEEEEEEEEEe---CccCCEEEEEEEeC
Confidence            46789999997 4655 7899998743211 111111 111111111 2334443   45666899999864

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=93.50  E-value=0.041  Score=32.90  Aligned_cols=21  Identities=19%  Similarity=0.529  Sum_probs=18.5

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.+++.+|++.|+|.-..
T Consensus        79 ~L~~~~l~~eDTAvYYCAr~~   99 (116)
T d1a2yb_          79 FLKMNSLHTDDTARYYCARER   99 (116)
T ss_dssp             EEEECSCCGGGCEEEEEEEES
T ss_pred             EcceeeeeeccceEEEEEEeC
Confidence            589999999999999997554

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=93.37  E-value=0.038  Score=33.27  Aligned_cols=20  Identities=25%  Similarity=0.567  Sum_probs=17.4

Q ss_pred             EEEEcccCCCCCeeeEEEEe
Q psy534          106 ELRISNIRSQDIGDYTCLAT  125 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~  125 (145)
                      .|.|.+++.+|++.|.|...
T Consensus        79 ~L~i~~l~~eDtA~YYCAr~   98 (120)
T d1dn0b1          79 SLKLSSVTAADTAVYYCARP   98 (120)
T ss_dssp             EEEECSCCGGGCEEEEEEEC
T ss_pred             cccccccccccccEEEEEee
Confidence            48999999999999999533

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.35  E-value=0.043  Score=33.48  Aligned_cols=21  Identities=29%  Similarity=0.578  Sum_probs=18.2

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.+++.+|++.|.|....
T Consensus        79 ~L~~~~L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          79 YMELTNLRSDDTAVYYCARDF   99 (130)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEeeccCCCCcEEEEEEeec
Confidence            488999999999999997653

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.29  E-value=0.043  Score=33.31  Aligned_cols=21  Identities=24%  Similarity=0.504  Sum_probs=18.2

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.+++.+|++.|+|....
T Consensus        80 yL~~~sL~~eDTavYYCAR~~  100 (127)
T d2fx7h1          80 YLELNSLRPEDTAVYYCAREG  100 (127)
T ss_dssp             EEEECSCCGGGCEEEEEEEEE
T ss_pred             eeeecccCcccceEEEEeecc
Confidence            488999999999999997554

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.25  E-value=0.027  Score=32.05  Aligned_cols=63  Identities=11%  Similarity=0.081  Sum_probs=35.0

Q ss_pred             ccceeeEEeecCC-Cc-cEEEEecCCCCcccccccceEEEecCCCCCC-eeeEEEcccCCCCCEEEEEEEEE
Q psy534           11 FQMLSVGDFADDE-DI-PVYIWYDSYPTHEAEEYKGRISRVDKESPFG-MASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        11 ~~~~~~~~w~~g~-p~-p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ...+.++|.+.|. |. ..+.|++++.. ...+. ... ....+.... ...|.|   ..+|-..|.|++.+
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~-~~~~~-~~~-~~~~dgty~~~S~l~v---~~~~~~~ytC~V~H   80 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLA-SGSGN-CST-GPNGDGSFHAWSLLEV---KRGDEHHYQCQVEH   80 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEE-CCCCE-EEE-EECSSSCEEEEEEEEE---ETTCGGGEEEEEEC
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEe-CCccC-ccc-eecCCCCEeEEEEEEE---CCCCCCEEEEEEEe
Confidence            3467899999984 54 47899998853 22221 111 111111111 223433   45666789999975

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=93.16  E-value=0.066  Score=32.45  Aligned_cols=21  Identities=24%  Similarity=0.550  Sum_probs=18.4

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.+++.+|++.|.|....
T Consensus        79 ~L~i~~l~~eDTAvYYCAr~~   99 (126)
T d1rjca1          79 YLQMNSLKPEDTAMYYCAADT   99 (126)
T ss_dssp             EEEECSCCGGGCEEEEEEECC
T ss_pred             EEEEeccCcccCceeEEEeec
Confidence            489999999999999997654

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.13  E-value=0.039  Score=33.49  Aligned_cols=19  Identities=26%  Similarity=0.529  Sum_probs=17.1

Q ss_pred             EEEEcccCCCCCeeeEEEE
Q psy534          106 ELRISNIRSQDIGDYTCLA  124 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a  124 (145)
                      .|.|.+++.+|.+.|+|..
T Consensus        79 yL~m~~L~~eDTAvYYCAr   97 (126)
T d1lmka1          79 YMQLSSLTSEDSAVYYCAR   97 (126)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             EeeecccCCCcceEEEEee
Confidence            5889999999999999964

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.06  E-value=0.038  Score=33.11  Aligned_cols=21  Identities=29%  Similarity=0.501  Sum_probs=18.1

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.+++.+|++.|+|....
T Consensus        79 ~L~m~sL~~eDtAvYYCAr~~   99 (117)
T d1um5h1          79 YLELSSLTSEDSAVYYCARSS   99 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEEEE
T ss_pred             eecccccCCCcceEEEEeecc
Confidence            489999999999999997543

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.97  E-value=0.049  Score=32.51  Aligned_cols=20  Identities=15%  Similarity=0.368  Sum_probs=17.6

Q ss_pred             EEEEcccCCCCCeeeEEEEe
Q psy534          106 ELRISNIRSQDIGDYTCLAT  125 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~  125 (145)
                      .|.|.+++.+|++.|+|...
T Consensus        80 ~L~i~~l~~eDtAvYYCAr~   99 (115)
T d1f3dh1          80 FMHLNSLTFEDSAVYYCAND   99 (115)
T ss_dssp             EEEECSCCGGGCEEEEEEEC
T ss_pred             EeeeeecCcCCcEEEEEecc
Confidence            48999999999999999643

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.076  Score=30.24  Aligned_cols=65  Identities=12%  Similarity=0.147  Sum_probs=34.0

Q ss_pred             cceeeEEeecCC-C-ccEEEEecCCCCcccccccceEEEecCCCCCC-eeeEEEcccCCCCCEEEEEEEEEe
Q psy534           12 QMLSVGDFADDE-D-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFG-MASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        12 ~~~~~~~w~~g~-p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ..+.++|.+.|. | ...++|.+++..... ....-......+.... ...|   .+..++...|.|++.+.
T Consensus        16 ~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~-~~~~~~~~~~~~~~~~~~s~l---~v~~~~~~~ytC~V~H~   83 (95)
T d1k5na1          16 HEATLRCWALGFYPAEITLTWQRDGEDQTQ-DTELVETRPAGDRTFQKWAAV---VVPSGEEQRYTCHVQHE   83 (95)
T ss_dssp             TEEEEEEEEEEEBSSCCEEEEEETTEECGG-GCEECCCEECSSSCEEEEEEE---EEETTCGGGEEEEEECT
T ss_pred             CCEEEEEEEEeEeCCCCEEEEEECCEEcCC-CceeccEEcCCCCeEEEEEEE---EEEcCCCCEEEEEEEEC
Confidence            457899999975 4 446899998753221 1111011111111111 2223   34455566899999753

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.82  E-value=0.15  Score=28.75  Aligned_cols=66  Identities=15%  Similarity=0.142  Sum_probs=36.1

Q ss_pred             ccceeeEEeecC-CCc-cEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           11 FQMLSVGDFADD-EDI-PVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        11 ~~~~~~~~w~~g-~p~-p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      +..+.++|.+.| .|. ..+.|.+++.. +.......... ..+.  .-.......+..+|...|.|++.+.
T Consensus        15 ~~~~tL~C~~~gFyP~~i~v~W~~ng~~-~~~~~~~~~~~-~~~~--t~~~~s~l~~~~~~~~~ytC~V~H~   82 (94)
T d1t7va1          15 GEKKKLKCLAYDFYPGKIDVHWTRAGEV-QEPELRGDVLH-NGNG--TYQSWVVVAVPPQDTAPYSCHVQHS   82 (94)
T ss_dssp             TSCEEEEEEEEEEBSSCEEEEEEETTEE-CCCSEEEEEEE-TTTT--EEEEEEEEEECTTCCSCEEEEEEET
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEE-CCCcEEeeeec-CCCC--eEEEEEEeEeCCCCCCEEEEEEEEC
Confidence            456789999998 465 46899998753 22111111111 1100  1111223344566677899999764

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.72  E-value=0.091  Score=30.08  Aligned_cols=38  Identities=21%  Similarity=0.342  Sum_probs=27.1

Q ss_pred             CCcEEEEEEeE-------------E--ecCCcEEEEcccCC-CCCeeeEEEEec
Q psy534           89 NGTWFHLDVHG-------------V--FNDGTELRISNIRS-QDIGDYTCLATH  126 (145)
Q Consensus        89 ~g~~~~l~c~~-------------~--~~~~~~L~i~~v~~-~d~G~Y~C~a~n  126 (145)
                      +|..|.|+|+.             .  -..+..|.+.+.+. +++|.|.|....
T Consensus        13 SGTtV~LTCP~~~~~~I~Wkkn~~~i~g~~~~~L~L~~FSE~e~SGyY~C~~~~   66 (100)
T d1jbja2          13 SGTSVELTCPLDSDENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPA   66 (100)
T ss_dssp             ETTEEEEECSSCCCTTCEEEETTEEECSCCCSEEEEESCCTTTSCEEEEEECSS
T ss_pred             eCCEEEEECCCCCCCceEEeeccccCCCCCCcEEEEccccccccCcceEEecCC
Confidence            48899999981             1  12344688888764 799999996443

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.69  E-value=0.057  Score=31.32  Aligned_cols=66  Identities=9%  Similarity=0.146  Sum_probs=34.2

Q ss_pred             cceeeEEeecC-CCcc-EEEEecCCCCcccccccceEEEecCCCC-CCeeeEEEcccCCCCCEEEEEEEEE
Q psy534           12 QMLSVGDFADD-EDIP-VYIWYDSYPTHEAEEYKGRISRVDKESP-FGMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        12 ~~~~~~~w~~g-~p~p-~~~w~k~~~~~~~~~~~~R~~~~~~~~~-~~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.++|.+.| .|.. .+.|++++.... .....-.....+ .. .....|.|..-.-.....|.|++.+
T Consensus        22 ~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~-~~~~~~~~~~~~-~~y~~~S~L~v~~~~w~~~~~ytC~V~H   90 (104)
T d1o0va1          22 PTIQLLCLVSGYTPGTIQITWLEDGQVMD-VDLSTASTTQEG-ELASTQSELTLSQKHWLSDRTYTCQVTY   90 (104)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECC-GGGEEEEEEEET-TEEEEEEEEEEEHHHHHTTCCEEEEEEE
T ss_pred             CeEEEEEEEEEEECCCcEEEEEECCEEcc-CCceeeeEeCCC-CeEEEEEEEEECHHHcCCCCEEEEEEEE
Confidence            34668999997 5655 589999875422 121111111111 00 0123355543322235679999975

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=92.61  E-value=0.068  Score=32.00  Aligned_cols=20  Identities=20%  Similarity=0.414  Sum_probs=17.6

Q ss_pred             EEEEcccCCCCCeeeEEEEe
Q psy534          106 ELRISNIRSQDIGDYTCLAT  125 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~  125 (145)
                      .|.|.+++.+|++.|+|...
T Consensus        80 yL~i~~L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          80 YMQFSSLTTEDSAIYYCARY   99 (118)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EecccccCCCcceEEEEeee
Confidence            58899999999999999654

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=92.53  E-value=0.064  Score=32.41  Aligned_cols=22  Identities=41%  Similarity=0.631  Sum_probs=18.8

Q ss_pred             EEEEcccCCCCCeeeEEEEecC
Q psy534          106 ELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .|.|.+++.+|++.|+|.....
T Consensus        79 yLq~~sL~~eDtAvYYCAr~~~  100 (124)
T d1zvya1          79 YLRMDSVKSEDTAIYTCGATRK  100 (124)
T ss_dssp             EEEECSCCGGGCEEEEEEECSS
T ss_pred             eceeccccCCcceEEEEeeccc
Confidence            5889999999999999976543

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=92.51  E-value=0.069  Score=32.16  Aligned_cols=21  Identities=29%  Similarity=0.504  Sum_probs=18.1

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.+++.+|++.|.|....
T Consensus        80 yL~m~sL~~eDTAvYYCAr~~  100 (122)
T d1bz7b1          80 FLQMTSLRSEDTAIYYCTRGG  100 (122)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             EeeeeeecccCceEEEeecCC
Confidence            588999999999999997544

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.50  E-value=0.078  Score=31.96  Aligned_cols=20  Identities=25%  Similarity=0.486  Sum_probs=17.5

Q ss_pred             EEEEcccCCCCCeeeEEEEe
Q psy534          106 ELRISNIRSQDIGDYTCLAT  125 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~  125 (145)
                      .|.|.+++.+|++.|+|...
T Consensus        80 ~L~~~sL~~eDTAvYYCAR~   99 (124)
T d1yedb1          80 YMQLSSLKSEDSAVYFCTRW   99 (124)
T ss_dssp             EEEEESCCGGGCEEEEEEEC
T ss_pred             EecccccCCCcceEEEeccc
Confidence            48899999999999999754

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=92.43  E-value=0.069  Score=32.04  Aligned_cols=21  Identities=29%  Similarity=0.536  Sum_probs=18.0

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.+.+++.+|.+.|+|....
T Consensus        80 ~L~m~~L~~eDTAvYYCAr~~  100 (120)
T d1ad9b1          80 YMELSSLRSEDTAFYFCAREK  100 (120)
T ss_dssp             EEEECSCCGGGCEEEEEEEEB
T ss_pred             eccccccCCCcceEEEEEEcC
Confidence            488899999999999997543

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.37  E-value=0.069  Score=32.02  Aligned_cols=19  Identities=21%  Similarity=0.485  Sum_probs=17.1

Q ss_pred             EEEEcccCCCCCeeeEEEE
Q psy534          106 ELRISNIRSQDIGDYTCLA  124 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a  124 (145)
                      .|.|.+++.+|++.|+|..
T Consensus        80 ~L~~~sL~~eDTAvYYCAr   98 (119)
T d1eapb1          80 YMQLNSLTSEDSAVYFCKR   98 (119)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             EeeeecccCCcceEEEEEE
Confidence            5899999999999999964

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.08  E-value=0.047  Score=31.81  Aligned_cols=27  Identities=7%  Similarity=0.218  Sum_probs=20.3

Q ss_pred             hccceeeEEeecC-CCcc-EEEEecCCCC
Q psy534           10 IFQMLSVGDFADD-EDIP-VYIWYDSYPT   36 (145)
Q Consensus        10 ~~~~~~~~~w~~g-~p~p-~~~w~k~~~~   36 (145)
                      ....+.++|.+.| .|.. .+.|++++..
T Consensus        19 ~~~~~tl~C~~~~f~P~~i~v~W~~~g~~   47 (108)
T d1ow0a2          19 LNELVTLTCLARGFSPKDVLVRWLQGSQE   47 (108)
T ss_dssp             SSSEEEEEEEEEEESSSCCEEEEEETTEE
T ss_pred             cCCceEEEEEEEEeECCCEEEEEEECCeE
Confidence            4567889999997 4544 7999998753

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.99  E-value=0.078  Score=30.50  Aligned_cols=30  Identities=17%  Similarity=0.327  Sum_probs=26.3

Q ss_pred             cCCcEEEEcccCCCCCeeeEEEEecCCCCcE
Q psy534          102 NDGTELRISNIRSQDIGDYTCLATHVLYPDL  132 (145)
Q Consensus       102 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  132 (145)
                      .+| +|+|..+.++|+|.|.-.+-+.-|.++
T Consensus        61 ~nG-tLkIK~L~~~d~GtYkv~vYd~~Gk~v   90 (101)
T d1hnfa1          61 KNG-TLKIKHLKTDDQDIYKVSIYDTKGKNV   90 (101)
T ss_dssp             TTS-CEEECSCCGGGCEEEEEEEEETTSCEE
T ss_pred             cCC-cEEeeeeeecCCCcEEEEEEcCCCcEe
Confidence            455 999999999999999999999988443

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.94  E-value=0.07  Score=31.85  Aligned_cols=22  Identities=23%  Similarity=0.561  Sum_probs=18.3

Q ss_pred             EEEEcccCCCCCeeeEEEEecC
Q psy534          106 ELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .|.+.+++.+|++.|.|.....
T Consensus        79 ~L~~~~L~~eDTAvYyCAr~~~  100 (116)
T d1fn4b1          79 FLKMNSLQTDDTGTYYCTRDLY  100 (116)
T ss_dssp             ECCEESCCCCCCEEEEEEEECS
T ss_pred             hcceeccCCCCCEEEEEEeecC
Confidence            4788999999999999965443

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.74  E-value=0.058  Score=32.29  Aligned_cols=19  Identities=21%  Similarity=0.464  Sum_probs=17.0

Q ss_pred             EEEEcccCCCCCeeeEEEE
Q psy534          106 ELRISNIRSQDIGDYTCLA  124 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a  124 (145)
                      .|.|.+++.+|++.|+|..
T Consensus        80 ~L~~~sL~~eDTAvYYCAr   98 (118)
T d2jelh1          80 YMELARLTSEDSAIYYCAR   98 (118)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             eecccccccCcceeeeEEE
Confidence            5899999999999999954

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.68  E-value=0.055  Score=32.36  Aligned_cols=19  Identities=26%  Similarity=0.508  Sum_probs=17.0

Q ss_pred             EEEEcccCCCCCeeeEEEE
Q psy534          106 ELRISNIRSQDIGDYTCLA  124 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a  124 (145)
                      .|.|.+++.+|++.|+|..
T Consensus        80 ~L~i~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          80 YMELSSLTSEDSAVYYCTR   98 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             EeeecccCCCcceEEEEec
Confidence            5899999999999999964

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=91.66  E-value=0.052  Score=32.65  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=18.9

Q ss_pred             EEEEcccCCCCCeeeEEEEecC
Q psy534          106 ELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .|.|.+++.+|++.|.|.....
T Consensus        81 ~L~i~~l~~eDsAvYyCAr~~~  102 (120)
T d2agjh1          81 VLTLTNLDPVDTATYYCARTSG  102 (120)
T ss_dssp             EEEEESCCGGGCEEEEEEEECS
T ss_pred             eeeEEeeeeccceEEeeEecCC
Confidence            6999999999999999975543

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.53  E-value=0.11  Score=30.98  Aligned_cols=22  Identities=23%  Similarity=0.471  Sum_probs=18.5

Q ss_pred             EEEEcccCCCCCeeeEEEEecC
Q psy534          106 ELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .|.|.+++.+|++.|+|.....
T Consensus        80 yLq~~~L~~eDTAvYYCAr~~~  101 (117)
T d1jnhb1          80 YLQLNSLTSEDSAVYSCSRGRS  101 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEE
T ss_pred             eecccccCCCcceEEEEeecCC
Confidence            4889999999999999975443

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.51  E-value=0.13  Score=29.35  Aligned_cols=51  Identities=18%  Similarity=0.207  Sum_probs=32.2

Q ss_pred             hccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCC-CCCEEEEEEE
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRE-SDQGWYECKV   77 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~-~D~G~Y~C~~   77 (145)
                      .++.|.+.|-..+.  ..+.|-++.... . .             ..+..|.+.+... +|+|.|.|..
T Consensus        13 SGTtV~LTCP~~~~--~~I~Wkkn~~~i-~-g-------------~~~~~L~L~~FSE~e~SGyY~C~~   64 (100)
T d1jbja2          13 SGTSVELTCPLDSD--ENLKWEKNGQEL-P-Q-------------KHDKHLVLQDFSEVEDSGYYVCYT   64 (100)
T ss_dssp             ETTEEEEECSSCCC--TTCEEEETTEEE-C-S-------------CCCSEEEEESCCTTTSCEEEEEEC
T ss_pred             eCCEEEEECCCCCC--CceEEeeccccC-C-C-------------CCCcEEEEccccccccCcceEEec
Confidence            46677888875543  248897776321 0 1             1133567777665 8999999954

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=91.50  E-value=0.12  Score=31.12  Aligned_cols=20  Identities=25%  Similarity=0.471  Sum_probs=17.3

Q ss_pred             EEEEcccCCCCCeeeEEEEe
Q psy534          106 ELRISNIRSQDIGDYTCLAT  125 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~  125 (145)
                      .|.|.+++.+|++.|+|...
T Consensus        80 yL~~~~L~~eDTA~YYCAR~   99 (124)
T d2b1hh1          80 HLQWSSLKPSDTALYYCARL   99 (124)
T ss_dssp             EEEESSCCGGGCEEEEEEEE
T ss_pred             EEeeeccccccceEEEEeec
Confidence            58899999999999999643

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=91.44  E-value=0.1  Score=29.55  Aligned_cols=26  Identities=12%  Similarity=-0.077  Sum_probs=18.8

Q ss_pred             ccceeeEEeecCC-C-ccEEEEecCCCC
Q psy534           11 FQMLSVGDFADDE-D-IPVYIWYDSYPT   36 (145)
Q Consensus        11 ~~~~~~~~w~~g~-p-~p~~~w~k~~~~   36 (145)
                      ...+.++|.+.|. | ...+.|++++..
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~   42 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVS   42 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeE
Confidence            3456789999974 4 447899998753

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=91.28  E-value=0.11  Score=31.43  Aligned_cols=21  Identities=24%  Similarity=0.626  Sum_probs=18.1

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.+++.+|++.|.|....
T Consensus        80 ~L~~~~L~~eDtavYYCAr~~  100 (126)
T d1dfbh1          80 YLQMNSLRAEDMALYYCVKGR  100 (126)
T ss_dssp             EEEECSCCGGGCEEEEEEEEE
T ss_pred             EeeeeeeccCcceEEEEEecc
Confidence            588999999999999997543

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=91.25  E-value=0.074  Score=32.49  Aligned_cols=21  Identities=19%  Similarity=0.419  Sum_probs=18.4

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.+++.+|++.|.|....
T Consensus        81 ~L~i~~l~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          81 VLVMTRVSPVDTATYFCAHRR  101 (132)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             EcccccCCcccceEEEEEEec
Confidence            589999999999999997553

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.97  E-value=0.072  Score=31.75  Aligned_cols=20  Identities=25%  Similarity=0.496  Sum_probs=17.4

Q ss_pred             EEEEcccCCCCCeeeEEEEe
Q psy534          106 ELRISNIRSQDIGDYTCLAT  125 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~  125 (145)
                      .|.+.+++.+|.+.|+|...
T Consensus        80 yL~~~sL~~eDtAvYYCAr~   99 (116)
T d1mjuh1          80 YMQLSSLTSDDSAVYYCANK   99 (116)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EecccccCCCCceEEEEccc
Confidence            58889999999999999643

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=90.92  E-value=0.083  Score=31.72  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=18.2

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.+++.+|++.|+|....
T Consensus        82 yL~~~~L~~eDTAvYYCAr~~  102 (121)
T d1nfdf1          82 YLQMNRLRVDDTAIYYCTRAG  102 (121)
T ss_dssp             EEEEESCCGGGCEECEEEEEE
T ss_pred             eceecccCCCcceEEEEeccC
Confidence            488999999999999997554

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.83  E-value=0.091  Score=31.82  Aligned_cols=18  Identities=28%  Similarity=0.582  Sum_probs=16.6

Q ss_pred             EEEEcccCCCCCeeeEEE
Q psy534          106 ELRISNIRSQDIGDYTCL  123 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~  123 (145)
                      .|.|.+++.+|++.|+|.
T Consensus        80 yL~~~~L~~eDtAvYYCA   97 (127)
T d1n0xh1          80 YMELRSLRSADTAVYYCA   97 (127)
T ss_dssp             EEEECSCCGGGCEEEEEE
T ss_pred             EEEEEccCCCCceEEEEE
Confidence            488999999999999996

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=90.81  E-value=0.082  Score=31.99  Aligned_cols=20  Identities=25%  Similarity=0.589  Sum_probs=17.8

Q ss_pred             EEEEcccCCCCCeeeEEEEe
Q psy534          106 ELRISNIRSQDIGDYTCLAT  125 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~  125 (145)
                      .|.|.+++.+|++.|.|...
T Consensus        81 ~L~i~~l~~eDtAvYyCAr~  100 (126)
T d1etzb1          81 FLKITSVDTSDTATYHCARR  100 (126)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EcceecccccccceEEEEEe
Confidence            59999999999999999743

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=90.79  E-value=0.063  Score=32.07  Aligned_cols=20  Identities=25%  Similarity=0.549  Sum_probs=17.4

Q ss_pred             EEEEcccCCCCCeeeEEEEe
Q psy534          106 ELRISNIRSQDIGDYTCLAT  125 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~  125 (145)
                      .|.|.+++.+|++.|+|...
T Consensus        80 ~L~~~sL~~eDTAvYYCAr~   99 (117)
T d1b2wh1          80 YLQMNSLRPEDTAVYYCARG   99 (117)
T ss_dssp             EEEECSCCGGGCEEEECCEE
T ss_pred             EeeeccccCCcceEEEEccc
Confidence            48899999999999999643

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.66  E-value=0.31  Score=29.48  Aligned_cols=20  Identities=25%  Similarity=0.571  Sum_probs=17.4

Q ss_pred             EEEEcccCCCCCeeeEEEEe
Q psy534          106 ELRISNIRSQDIGDYTCLAT  125 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~  125 (145)
                      .|.|.+++.+|++.|+|...
T Consensus        80 yL~~~sL~~eDtA~YYCAr~   99 (130)
T d1rzga1          80 YMELSSLRSEDTAVFYCASP   99 (130)
T ss_dssp             EEEECSCCGGGCEEEEEEEC
T ss_pred             EeeeeecCCCccEEEEEEEe
Confidence            38889999999999999754

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.54  E-value=0.11  Score=30.14  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=15.5

Q ss_pred             EEEcccCCCCCe-eeEEEEecCCC
Q psy534          107 LRISNIRSQDIG-DYTCLATHVLY  129 (145)
Q Consensus       107 L~i~~v~~~d~G-~Y~C~a~n~~g  129 (145)
                      |.+. ++++|.| .|+|+|++.++
T Consensus        66 l~~~-~~~~D~g~~ltC~a~~~~~   88 (109)
T d1vcaa1          66 VTFT-PVIEDIGKVLVCRAKLHID   88 (109)
T ss_dssp             EEEC-CCGGGTTCEEEEEEEECSC
T ss_pred             EEcc-CChHHCCcEEEEEEEcCcC
Confidence            4444 4555655 69999999875

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.53  E-value=0.15  Score=29.23  Aligned_cols=67  Identities=12%  Similarity=0.059  Sum_probs=34.0

Q ss_pred             cceeeEEeecCC-Cc-cEEEEecCCCCcccccccceEEEecCCCCC-CeeeEEEcccCCCCCEEEEEEEEE
Q psy534           12 QMLSVGDFADDE-DI-PVYIWYDSYPTHEAEEYKGRISRVDKESPF-GMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        12 ~~~~~~~w~~g~-p~-p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.++|.+.|. |. ..+.|++++.. +.............+... -...|.|..-.-.....|.|++.+
T Consensus        21 ~~~tl~C~v~~f~P~~i~v~W~~~g~~-~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H   90 (102)
T d1q0xl2          21 AKATLVCTITDFYPGVVTVDWKVDGTP-VTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTH   90 (102)
T ss_dssp             TEEEEEEEEEEEBSSCCEEEEEETTEE-ECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEE
T ss_pred             CeEEEEEEEeeeeCCCCEEEEEECCEE-CCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEE
Confidence            456789999865 43 47999998743 222211100011111111 123344443322346789999975

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.47  E-value=0.12  Score=31.27  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=18.1

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.+++.+|++.|+|....
T Consensus        80 yL~~~sL~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          80 YLELRNLRSDDTAVYFCAGVY  100 (128)
T ss_dssp             EEEECSCCGGGCEEEEEEEEE
T ss_pred             EeeeeeccccCceEEEEeEEe
Confidence            488899999999999998643

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.44  E-value=0.83  Score=25.88  Aligned_cols=68  Identities=12%  Similarity=0.057  Sum_probs=33.3

Q ss_pred             hccceeeEEeecC-CCc-cE-EEEecCCCCcccccccceEEEecCCCCC-CeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           10 IFQMLSVGDFADD-EDI-PV-YIWYDSYPTHEAEEYKGRISRVDKESPF-GMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        10 ~~~~~~~~~w~~g-~p~-p~-~~w~k~~~~~~~~~~~~R~~~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...++.++|.+.| .|. .+ +.|.+++.. ... ....... ..+... ....|.|..-.-.....|.|++.+.
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~-~~~-~~~~~~~-~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~   89 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKD-ITT-VNFPPAL-ASGGRYTMSNQLTLPAVECPEGESVKCSVQHD   89 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSS-CEE-EECCCEE-CSSSCEEEEEEEEECGGGSCTTCEEEEEEEET
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCc-Cce-eEeeeEe-cCCCCEEEEEEEEEeHHHccCCCEEEEEEEEC
Confidence            3467789999998 454 34 556666533 111 1111111 110001 1233445444333356799999863

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.14  E-value=0.28  Score=27.95  Aligned_cols=23  Identities=9%  Similarity=0.270  Sum_probs=20.0

Q ss_pred             eeeEEEcccCCCCCEEEEEEEEE
Q psy534           57 MASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        57 ~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..-+.|.+++..|.|.|.|++..
T Consensus        58 k~Gf~I~~~~~~~~g~y~C~a~~   80 (95)
T d1fltx_          58 RKGFIISNATYKEIGLLTCEATV   80 (95)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeCCCcccCeEEEEEEEE
Confidence            45588999999999999999964

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=90.08  E-value=0.32  Score=28.89  Aligned_cols=24  Identities=29%  Similarity=0.511  Sum_probs=19.6

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.|.+++.+|++.|.|.-....+
T Consensus        79 ~L~i~~l~~eDtA~YyCAr~~~~~  102 (118)
T d1lo4h1          79 TLQMSRLRSEDTAIYYCARGTSFV  102 (118)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTT
T ss_pred             eeccccccCCcceEEEecccCCCC
Confidence            589999999999999997654433

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.90  E-value=0.29  Score=27.51  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=19.9

Q ss_pred             EEEEcccCCCCCeeeEEEEecCCC
Q psy534          106 ELRISNIRSQDIGDYTCLATHVLY  129 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~~g  129 (145)
                      .|.+..+-.+|.|.|+|.|.-..+
T Consensus        69 vLhF~pvl~sDnGsYrCSanf~s~   92 (104)
T d1xaua_          69 VLHFKPIHLSDNGSYSCSTNFNSQ   92 (104)
T ss_dssp             EEEETTCCGGGCEEEEEEEEETTE
T ss_pred             EEEeeeeeecCCCceEEecCCChh
Confidence            467778899999999999976654

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.55  E-value=0.091  Score=29.40  Aligned_cols=36  Identities=31%  Similarity=0.465  Sum_probs=23.6

Q ss_pred             CCCcEEEEEEeE---------------EecCCcEEEEcccCCCCCeeeEEE
Q psy534           88 KNGTWFHLDVHG---------------VFNDGTELRISNIRSQDIGDYTCL  123 (145)
Q Consensus        88 ~~g~~~~l~c~~---------------~~~~~~~L~i~~v~~~d~G~Y~C~  123 (145)
                      ..+..+.|.|..               ....|..|++.--...|+|+|+|.
T Consensus        19 ~~~~~V~L~C~t~eE~~I~W~kd~~se~~~~GntltV~VkE~~~aGnYTCh   69 (87)
T d3d85d1          19 APGEMVVLTCDTPEEDGITWTLDQSSEVLGSGKTLTIQVKEFGDAGQYTCH   69 (87)
T ss_dssp             CCCEEEEEECSSSCCSSCEEEETTCCCCCEESSEEEEEECSGGGCEEEEEE
T ss_pred             CCccEEEEecCCCcccccEEeeCCccccccCCCEEEEEEEeccCCcceeEe
Confidence            446777888861               113455677754445689999996

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=89.54  E-value=0.31  Score=29.00  Aligned_cols=26  Identities=12%  Similarity=-0.044  Sum_probs=18.8

Q ss_pred             hccceeeEEeecCC-C-ccEEEEecCCC
Q psy534           10 IFQMLSVGDFADDE-D-IPVYIWYDSYP   35 (145)
Q Consensus        10 ~~~~~~~~~w~~g~-p-~p~~~w~k~~~   35 (145)
                      ....+.++|.+.|. | ...+.|++++.
T Consensus        19 ~~~~~tL~C~v~gf~P~~i~v~W~~~g~   46 (127)
T d1ogae2          19 HTQKATLVCLATGFYPDHVELSWWVNGK   46 (127)
T ss_dssp             HHSEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred             cCCcEEEEEEEEeccCCCeEEEEEECCE
Confidence            34557899999874 4 34689999874

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.39  E-value=0.43  Score=26.16  Aligned_cols=19  Identities=16%  Similarity=0.614  Sum_probs=13.5

Q ss_pred             EEEcccCCCCCeeeEEEEecC
Q psy534          107 LRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       107 L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      ++|..  .+++|.|.|+..+.
T Consensus        52 y~V~~--~D~SGeY~CVFl~~   70 (80)
T d3b5ha2          52 FKVDS--DDQWGEYSCVFLPE   70 (80)
T ss_dssp             EEECG--GGCCEEEEEEEEST
T ss_pred             EEEec--CCCCceEEEEEcCC
Confidence            45543  67899999996543

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=89.24  E-value=0.2  Score=30.46  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=18.0

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.+.+++.+|++.|+|....
T Consensus        79 ~L~~~~L~~eDtA~YYCAr~~   99 (133)
T d1rzfh1          79 YLHLRGLRSDDTAVYYCASNS   99 (133)
T ss_dssp             EEEECSCCGGGCEEEEEEEEE
T ss_pred             EEeeccCCCCCCEEEEeeecc
Confidence            488899999999999996543

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.20  E-value=0.25  Score=27.76  Aligned_cols=60  Identities=15%  Similarity=0.147  Sum_probs=34.9

Q ss_pred             hccceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCC-CCCEEEEEEEE
Q psy534           10 IFQMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRE-SDQGWYECKVV   78 (145)
Q Consensus        10 ~~~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~-~D~G~Y~C~~~   78 (145)
                      .++.|.+.|-..  +...+.|-+++.....++-.+-. .      .....|.+.+... +++|.|.|.+.
T Consensus         9 SGTtV~LTCP~~--~~~~i~W~~n~~~~~~~~~~~~~-~------~~~~~l~L~dfSe~e~sGyY~C~~~   69 (91)
T d1xiwa_           9 SGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNI-G------SDEDHLSLKEFSELEQSGYYVCYPR   69 (91)
T ss_dssp             ETTEEEEECSSC--TTSCEEEEETTEEESSSCSCTTE-E------EETTEEEETTCCHHHHCEEEEEEET
T ss_pred             eCCEEEEECCCC--CCCceeeeeccccccCCCccccc-c------cccceEEecccCccccCceEEEEcC
Confidence            467778888533  33458998876321111110000 0      1134577788776 89999999873

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=89.05  E-value=0.11  Score=31.36  Aligned_cols=20  Identities=20%  Similarity=0.587  Sum_probs=17.7

Q ss_pred             EEEEcccCCCCCeeeEEEEe
Q psy534          106 ELRISNIRSQDIGDYTCLAT  125 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~  125 (145)
                      .|.|.+++.+|++.|.|...
T Consensus        80 yL~l~~l~~eDtAvYyCAr~   99 (127)
T d3cx5j1          80 FLKLNSVTTEDTATYYCARS   99 (127)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             ecceeccccccceEEEeeee
Confidence            58999999999999999743

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.05  E-value=0.13  Score=30.87  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=18.3

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.+++.+|++.|+|....
T Consensus        80 ~L~i~~L~~eDtAvYYCAr~~  100 (121)
T d1j05b_          80 YLQLTSLTSEDTAVYYCAPFG  100 (121)
T ss_dssp             EEEECSCCGGGCEEEEEEEEB
T ss_pred             eecccccCcCcceEEEeEeec
Confidence            589999999999999997543

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=88.80  E-value=0.12  Score=30.95  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=18.8

Q ss_pred             EEEEcccCCCCCeeeEEEEecC
Q psy534          106 ELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .|.|.+++.+|++.|+|.....
T Consensus        80 ~L~i~sL~~eDtAvYYCAr~~~  101 (121)
T d1ol0a_          80 YLQMNSLRAEDTAVYYCAREPR  101 (121)
T ss_dssp             EEEECSCCGGGCEEEEEEECCS
T ss_pred             EeeeeecccccceEEEEEEecC
Confidence            5899999999999999975543

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.70  E-value=0.15  Score=29.51  Aligned_cols=68  Identities=13%  Similarity=0.153  Sum_probs=34.1

Q ss_pred             cceeeEEeecC-CC-ccEEEEecCCCCcccccccceEEEecCCCCC-CeeeEEEcccCCCCCEEEEEEEEE
Q psy534           12 QMLSVGDFADD-ED-IPVYIWYDSYPTHEAEEYKGRISRVDKESPF-GMASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        12 ~~~~~~~w~~g-~p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.++|.+.| .| ...+.|++++.......+.........+... -...|.|..-.-.+...|.|++.+
T Consensus        20 ~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H   90 (105)
T d1fp5a2          20 DKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVH   90 (105)
T ss_dssp             CCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEEC
T ss_pred             CcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEE
Confidence            35678999986 34 4579999987532211111100011110011 133455543332345679999985

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.69  E-value=0.093  Score=29.62  Aligned_cols=21  Identities=19%  Similarity=0.502  Sum_probs=17.0

Q ss_pred             EEEEcccCC-CCCeeeEEEEec
Q psy534          106 ELRISNIRS-QDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~-~d~G~Y~C~a~n  126 (145)
                      .|.+.+.+. +++|.|.|.+..
T Consensus        49 ~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_          49 HLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EEEETTCCHHHHCEEEEEEETT
T ss_pred             eEEecccCccccCceEEEEcCC
Confidence            688888765 789999998854

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.47  E-value=0.11  Score=29.87  Aligned_cols=25  Identities=8%  Similarity=0.044  Sum_probs=18.3

Q ss_pred             cceeeEEeecCC-C-ccEEEEecCCCC
Q psy534           12 QMLSVGDFADDE-D-IPVYIWYDSYPT   36 (145)
Q Consensus        12 ~~~~~~~w~~g~-p-~p~~~w~k~~~~   36 (145)
                      ..+.++|.+.|. | ...+.|++++..
T Consensus        21 ~~~tL~C~v~~f~P~~i~v~W~~~g~~   47 (102)
T d1rzfl2          21 NKATLVCLISDFYPGAVTVAWKADSSP   47 (102)
T ss_dssp             TCEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             CcEEEEEEEEeeCCCCeEEEEEECCEE
Confidence            447899999973 4 346899988743

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=88.45  E-value=0.14  Score=30.73  Aligned_cols=21  Identities=24%  Similarity=0.490  Sum_probs=18.1

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.+++.+|++.|+|....
T Consensus        81 yL~~~~L~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          81 YMGLSSLRPEDTAVYYCARDP  101 (122)
T ss_dssp             EEEECSCCGGGCEEEEEEEET
T ss_pred             eecccccCCCcceEEEEeecC
Confidence            488999999999999997653

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=88.41  E-value=0.16  Score=30.47  Aligned_cols=20  Identities=20%  Similarity=0.419  Sum_probs=17.8

Q ss_pred             EEEEcccCCCCCeeeEEEEe
Q psy534          106 ELRISNIRSQDIGDYTCLAT  125 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~  125 (145)
                      .|.|.+++.+|++.|.|...
T Consensus        81 ~L~i~sl~~eDsAvYyCAr~  100 (123)
T d1r0ah1          81 FLNMMTVETADTAIYYCAQS  100 (123)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EcceeecccccceEEeeccc
Confidence            59999999999999999743

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.32  E-value=0.24  Score=28.22  Aligned_cols=23  Identities=39%  Similarity=0.417  Sum_probs=20.4

Q ss_pred             cEEEEcccCCCCCeeeEEEEecC
Q psy534          105 TELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       105 ~~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .-..|+++...++|.|.|.|...
T Consensus        59 ~Gf~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          59 KGFIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             TEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEeCCCcccCeEEEEEEEEC
Confidence            36899999999999999999765

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.23  E-value=0.93  Score=24.85  Aligned_cols=50  Identities=16%  Similarity=0.234  Sum_probs=32.4

Q ss_pred             cceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           12 QMLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        12 ~~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      ..|.+.|   +.....++|++++.. +        ..+.    ..+.+|-+-.....--|.|.|..
T Consensus        18 g~V~L~C---n~~~k~i~W~kdg~~-i--------~~~~----~~~ktlnLG~~~~DPRG~Y~C~~   67 (81)
T d1sy6a1          18 GSVLLTC---DAEAKNITWFKDGKM-I--------GFLT----EDKKKWNLGSNAKDPRGMYQCKG   67 (81)
T ss_dssp             SEEEEEE---CSCSSEEEEEETTEE-E--------EEEE----SSCCCEEEEEGGGCCEEEEEEES
T ss_pred             CeEEEEe---CCCCcEEEEecCCeE-e--------eccc----CCcceeecCCcccCCCcceEcCC
Confidence            3456666   344558999998743 1        1110    12566777777788899999965

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=87.97  E-value=0.81  Score=26.17  Aligned_cols=26  Identities=4%  Similarity=-0.149  Sum_probs=18.8

Q ss_pred             ccceeeEEeecCC-Cc-cEEEEecCCCC
Q psy534           11 FQMLSVGDFADDE-DI-PVYIWYDSYPT   36 (145)
Q Consensus        11 ~~~~~~~~w~~g~-p~-p~~~w~k~~~~   36 (145)
                      ...+.++|.+.|. |. ..+.|++++..
T Consensus        24 ~~~~~l~Clv~~f~P~~i~v~W~~~g~~   51 (107)
T d1hxmb2          24 QKAGTYLCLLEKFFPDVIKIHWEEKKSN   51 (107)
T ss_dssp             SSCEEEEEEEEEESSCCEEEEEEESSSC
T ss_pred             CCcEEEEEEEeEEeCCceEEEEEECCeE
Confidence            4556889999963 43 46899988754

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=87.94  E-value=0.29  Score=27.87  Aligned_cols=68  Identities=15%  Similarity=0.109  Sum_probs=34.9

Q ss_pred             ccceeeEEeecCC-C-ccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEE---cccCCCCCEEEEEEEEEe
Q psy534           11 FQMLSVGDFADDE-D-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNL---TKIRESDQGWYECKVVFL   80 (145)
Q Consensus        11 ~~~~~~~~w~~g~-p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I---~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++|.+.|- | ...+.|++++.........+. ... .....++++..+   ..+..+|-..|.|.+.+.
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~-~~~-~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~   86 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSK-QHH-DPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKGI   86 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCS-CCC-CCEECSSSCEEEEEEEEECTTCGGGEEEEEEEG
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeee-EEc-ceeeCCCCEEEEEEEEEECCCCCCEEEEEEEeC
Confidence            3467889999975 4 346889998753211111110 000 000122333222   134455667899999764

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.40  E-value=0.38  Score=27.42  Aligned_cols=65  Identities=6%  Similarity=0.028  Sum_probs=33.7

Q ss_pred             ccceeeEEeecC-CC-ccEEEEecCCCCcccccccceEEEecCCCCC-CeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           11 FQMLSVGDFADD-ED-IPVYIWYDSYPTHEAEEYKGRISRVDKESPF-GMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        11 ~~~~~~~~w~~g-~p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...+.++|.+.| .| ...+.|.+++.......+..   ...+ ... ....|.|..-.- +.|.|.|++.+.
T Consensus        20 ~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~---~~~~-g~~s~~S~L~v~~~~w-~~~~ytC~V~H~   87 (101)
T d1kcvh2          20 ASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSA---VLQS-GLYTLSSNTTVASGTW-PSASVTCLVAHP   87 (101)
T ss_dssp             CSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCC---EEET-TEEEEEEEEEEETTTT-TTSCCEEEEEEG
T ss_pred             CCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeee---ecCC-CCEEEEEEEEEchhhc-CCCeEEEEEEeC
Confidence            457789999997 44 34689977764311111111   1111 000 023344442222 367899999764

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=87.20  E-value=0.24  Score=29.63  Aligned_cols=20  Identities=25%  Similarity=0.607  Sum_probs=17.8

Q ss_pred             EEEEcccCCCCCeeeEEEEe
Q psy534          106 ELRISNIRSQDIGDYTCLAT  125 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~  125 (145)
                      .|.|.+++.+|++.|+|...
T Consensus        80 yLq~~~L~~eDtAvYYCAr~   99 (121)
T d2p49b1          80 YLQMDSLKPEDTATYYCAAG   99 (121)
T ss_dssp             EEEECSCCGGGCEEEEEEES
T ss_pred             EEEeeeccccceeEEeeecc
Confidence            48899999999999999764

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=87.08  E-value=0.23  Score=29.69  Aligned_cols=21  Identities=14%  Similarity=0.401  Sum_probs=18.2

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.+++.+|++.|.|....
T Consensus        81 ~L~~~sL~~eDtAvYYCAr~~  101 (120)
T d1ai1h1          81 FIQLISVTNEDTAMYYCSREN  101 (120)
T ss_dssp             EEEESSCCGGGCEEEEEEEEE
T ss_pred             ecceeeeeccceeEEEEEecC
Confidence            589999999999999997543

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=86.93  E-value=0.6  Score=25.83  Aligned_cols=60  Identities=12%  Similarity=0.002  Sum_probs=31.3

Q ss_pred             ceeeEEeecCC-C-ccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEEEEe
Q psy534           13 MLSVGDFADDE-D-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKVVFL   80 (145)
Q Consensus        13 ~~~~~~w~~g~-p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~   80 (145)
                      ...++|+++|- | ...+.|.+++.. ....   .......+.  .-..+.+..+...|  .|.|++.+.
T Consensus        15 ~~tl~Cl~~gF~P~~i~v~W~~~g~~-~~~~---~~~~~~~~g--tys~~s~~~~~~~~--~yTC~V~H~   76 (86)
T d1hxma2          15 GTNVACLVKEFYPKDIRINLVSSKKI-TEFD---PAIVISPSG--KYNAVKLGKYEDSN--SVTCSVQHD   76 (86)
T ss_dssp             TTEEEEEEESCBSSCCEEEEECSSEE-EECC---CEEEECTTS--SEEEEEEEEETTTT--TCEEEEEET
T ss_pred             CCEEEEEEeeEECCCCEEEEEECCEE-ccCc---EEeeeccCC--cEEEEEEEecCCCC--EEEEEEEEC
Confidence            35688999975 4 346789888743 2111   111111101  11123334455555  599999753

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=86.68  E-value=0.19  Score=30.09  Aligned_cols=22  Identities=27%  Similarity=0.593  Sum_probs=18.8

Q ss_pred             EEEEcccCCCCCeeeEEEEecC
Q psy534          106 ELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .|.|.+++.+|++.|+|.....
T Consensus        82 ~L~~~sL~~eDTAvYYCar~~~  103 (122)
T d1q9rb1          82 YLQMNTLRAEDSATYYCARDHD  103 (122)
T ss_dssp             EEEECSCCGGGCEEEEEEECCC
T ss_pred             ccceeeeccCcceEEEEEecCC
Confidence            5889999999999999986543

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=86.53  E-value=0.24  Score=29.56  Aligned_cols=21  Identities=29%  Similarity=0.599  Sum_probs=18.2

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.+++.+|++.|.|....
T Consensus        82 ~L~~~~L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          82 YLQMNTLRAEDTGIYYCTGIY  102 (120)
T ss_dssp             EEEECSCCGGGCEEEEEEEEB
T ss_pred             ccceeeccCCCceEEEeeEec
Confidence            588999999999999997544

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.00  E-value=0.4  Score=27.23  Aligned_cols=26  Identities=8%  Similarity=-0.065  Sum_probs=19.2

Q ss_pred             ccceeeEEeecCC-C-ccEEEEecCCCC
Q psy534           11 FQMLSVGDFADDE-D-IPVYIWYDSYPT   36 (145)
Q Consensus        11 ~~~~~~~~w~~g~-p-~p~~~w~k~~~~   36 (145)
                      ...+.++|.+.|. | ...+.|++++..
T Consensus        19 ~~~~tL~Clv~gf~P~~i~v~W~~~g~~   46 (102)
T d1l6xa2          19 KNQVSLTCLVKGFYPSDIAVEWESNGQP   46 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEE
Confidence            4557799999974 4 357999998753

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=85.60  E-value=0.25  Score=29.79  Aligned_cols=22  Identities=23%  Similarity=0.582  Sum_probs=19.0

Q ss_pred             EEEEcccCCCCCeeeEEEEecC
Q psy534          106 ELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .|+|.+++.+|++.|.|.....
T Consensus        85 ~L~i~~l~~eDtAvYYCAr~~~  106 (127)
T d1i3ua_          85 NLQMNSLKPEDTAVYYCAAKTT  106 (127)
T ss_dssp             EEEECSCCGGGCEEEEEEEESC
T ss_pred             EEeeecccccceeEEEEEEEee
Confidence            5899999999999999986543

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.39  E-value=0.25  Score=28.47  Aligned_cols=26  Identities=15%  Similarity=-0.110  Sum_probs=18.6

Q ss_pred             ccceeeEEeecCC-Cc-cEEEEecCCCC
Q psy534           11 FQMLSVGDFADDE-DI-PVYIWYDSYPT   36 (145)
Q Consensus        11 ~~~~~~~~w~~g~-p~-p~~~w~k~~~~   36 (145)
                      ...+.++|.+.|. |. ..+.|.+++..
T Consensus        20 ~~~~tL~Cl~~~f~P~~i~v~W~~ng~~   47 (107)
T d1mjul2          20 SGGASVVCFLNNFYPKDINVKWKIDGSE   47 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEE
Confidence            3456789999864 43 47999988743

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=85.10  E-value=0.28  Score=29.23  Aligned_cols=22  Identities=18%  Similarity=0.422  Sum_probs=18.7

Q ss_pred             EEEEcccCCCCCeeeEEEEecC
Q psy534          106 ELRISNIRSQDIGDYTCLATHV  127 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n~  127 (145)
                      .|.|.+++.+|++.|+|.....
T Consensus        80 ~L~~~sL~~eDTAvYYCAr~~~  101 (119)
T d1ncwh1          80 FLQLNSVTTEDTATYYCAGLLW  101 (119)
T ss_dssp             EEEECSCCGGGCEEEEEEEEET
T ss_pred             eccccccccCCceEEEEeEecc
Confidence            5899999999999999975543

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=84.96  E-value=0.2  Score=29.45  Aligned_cols=20  Identities=30%  Similarity=0.718  Sum_probs=17.6

Q ss_pred             EEEEcccCCCCCeeeEEEEe
Q psy534          106 ELRISNIRSQDIGDYTCLAT  125 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~  125 (145)
                      .|.|.+++.+|++.|.|.-.
T Consensus        82 ~L~i~sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          82 YLQMNNLKTEDTGIYYCVRG  101 (109)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EecccCCCHhHCEEEEEEEc
Confidence            58999999999999999643

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=84.44  E-value=0.46  Score=27.00  Aligned_cols=26  Identities=12%  Similarity=0.025  Sum_probs=18.8

Q ss_pred             ccceeeEEeecCC-C-ccEEEEecCCCC
Q psy534           11 FQMLSVGDFADDE-D-IPVYIWYDSYPT   36 (145)
Q Consensus        11 ~~~~~~~~w~~g~-p-~p~~~w~k~~~~   36 (145)
                      ...+.++|.+.|. | ...+.|.+++..
T Consensus        19 ~~~~tl~C~v~gf~P~~i~v~W~~~g~~   46 (102)
T d1igtb4          19 KKQVTLTCMVTDFMPEDIYVEWTNNGKT   46 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEECCEE
Confidence            4456789999873 4 457999998743

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=84.38  E-value=0.11  Score=29.96  Aligned_cols=26  Identities=12%  Similarity=0.052  Sum_probs=19.1

Q ss_pred             ccceeeEEeecC-CCc-cEEEEecCCCC
Q psy534           11 FQMLSVGDFADD-EDI-PVYIWYDSYPT   36 (145)
Q Consensus        11 ~~~~~~~~w~~g-~p~-p~~~w~k~~~~   36 (145)
                      ...+.++|.+.| .|. ..+.|++++..
T Consensus        20 ~~~~~l~C~~~gf~P~~i~v~W~~~g~~   47 (104)
T d1nfde2          20 TNKATLVCLVNDFYPGSATVTWKANGAT   47 (104)
T ss_dssp             TTEECCCEEEEEEBSSCCEEEEEETTEE
T ss_pred             CCcEEEEEEEEEeeCCCCEEEEEECCEE
Confidence            345678999987 454 47999998754

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=83.81  E-value=0.33  Score=29.23  Aligned_cols=21  Identities=29%  Similarity=0.585  Sum_probs=18.3

Q ss_pred             EEEEcccCCCCCeeeEEEEec
Q psy534          106 ELRISNIRSQDIGDYTCLATH  126 (145)
Q Consensus       106 ~L~i~~v~~~d~G~Y~C~a~n  126 (145)
                      .|.|.+++.+|++.|+|....
T Consensus        80 yL~~~~L~~eDTA~YYCAr~~  100 (127)
T d2fb4h1          80 FLQMDSLRPEDTGVYFCARDG  100 (127)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             EeeeeeeeecceeEEEEEEec
Confidence            588999999999999997654

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.52  E-value=1.8  Score=24.57  Aligned_cols=27  Identities=19%  Similarity=0.167  Sum_probs=19.5

Q ss_pred             hccceeeEEeecCC-Cc-cEEEEecCCCC
Q psy534           10 IFQMLSVGDFADDE-DI-PVYIWYDSYPT   36 (145)
Q Consensus        10 ~~~~~~~~~w~~g~-p~-p~~~w~k~~~~   36 (145)
                      ....+.+.|.+.|. |. ..+.|.+++..
T Consensus        20 ~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~   48 (105)
T d1dn0b2          20 DTSSVAVGCLAQDFLPDSITFSWKYKNNS   48 (105)
T ss_dssp             -CCSEEEEEEEEEEBSSCCEEEEEETTSC
T ss_pred             CCCceEEEEEEecccCCcEEEEEEECCcc
Confidence            35667889999974 53 56899988754

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.33  E-value=0.54  Score=26.66  Aligned_cols=66  Identities=12%  Similarity=0.105  Sum_probs=33.8

Q ss_pred             cceeeEEeecCC-C-ccEEEEecCCCCcccccccceEEEecCCCCCC-eeeEEEcccCCCCCEEEEEEEEE
Q psy534           12 QMLSVGDFADDE-D-IPVYIWYDSYPTHEAEEYKGRISRVDKESPFG-MASLNLTKIRESDQGWYECKVVF   79 (145)
Q Consensus        12 ~~~~~~~w~~g~-p-~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~   79 (145)
                      ..+.++|.+.|. | ...+.|.+++... .......... ..+.... ...|.|..-.-.+...|.|++.+
T Consensus        20 ~~~~L~C~v~~f~P~~i~v~W~~~g~~~-~~~~~~~~~~-~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H   88 (102)
T d1i1ca2          20 SQVSITCMVKGFYPPDIYTEWKMNGQPQ-ENYKNTPPTM-DTDGSYFLYSKLNVKKETWQQGNTFTCSVLH   88 (102)
T ss_dssp             SEEEEEEEEEEEBSSCCEEEEEETTEEC-SSEEECCCEE-CTTSCEEEEEEEEEEHHHHHTTCCEEEEEEC
T ss_pred             CeEEEEEEEEEEECCCCEEEEEECCeec-cCcEEcccEe-CCCCCEEEEEEEEECHHHhCCCCEEEEEEEe
Confidence            446789999864 4 3579999987532 1111111111 1111111 23344543332445579999975

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.38  E-value=0.59  Score=26.74  Aligned_cols=26  Identities=12%  Similarity=-0.066  Sum_probs=19.1

Q ss_pred             ccceeeEEeecCC-Cc-cEEEEecCCCC
Q psy534           11 FQMLSVGDFADDE-DI-PVYIWYDSYPT   36 (145)
Q Consensus        11 ~~~~~~~~w~~g~-p~-p~~~w~k~~~~   36 (145)
                      ...+.++|.+.|. |. ..+.|.+++..
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~   47 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVDNAL   47 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEECCEE
Confidence            3567889999874 54 47999998753

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.36  E-value=0.9  Score=25.17  Aligned_cols=49  Identities=12%  Similarity=0.112  Sum_probs=29.4

Q ss_pred             ceeeEEeecCCCccEEEEecCCCCcccccccceEEEecCCCCCCeeeEEEcccCCCCCEEEEEEE
Q psy534           13 MLSVGDFADDEDIPVYIWYDSYPTHEAEEYKGRISRVDKESPFGMASLNLTKIRESDQGWYECKV   77 (145)
Q Consensus        13 ~~~~~~w~~g~p~p~~~w~k~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   77 (145)
                      .|.+.|   +.....++|++++..... .            .....+|-+-+....--|.|.|..
T Consensus        24 sV~L~C---n~~~k~i~W~kdg~~i~~-~------------~~~~ktlnLG~~~~DPRGiY~C~g   72 (86)
T d1jbja1          24 SVLLTC---GLTDKTIKWLKDGSIISP-L------------NATKNTWNLGNNAKDPRGTYQCQG   72 (86)
T ss_dssp             EEEEEC---SSSCSCEEEEETTEECCC-S------------SCCSSCCEEEETTSCCEEEEEEEE
T ss_pred             eEEEEe---CCCCcEEEEecCCceecc-c------------ccccceeecCCcccCCCcceEcCC
Confidence            344555   223457899998743110 0            011355667777788899999976

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.77  E-value=0.45  Score=27.02  Aligned_cols=25  Identities=12%  Similarity=0.003  Sum_probs=18.2

Q ss_pred             cceeeEEeecCC-C-ccEEEEecCCCC
Q psy534           12 QMLSVGDFADDE-D-IPVYIWYDSYPT   36 (145)
Q Consensus        12 ~~~~~~~w~~g~-p-~p~~~w~k~~~~   36 (145)
                      ..+.++|.+.|. | ...+.|++++..
T Consensus        19 ~~~tL~C~v~~f~P~~i~v~W~~~g~~   45 (101)
T d1cqka_          19 DLVSLTCMITDFFPEDITVEWQWNGQP   45 (101)
T ss_dssp             SEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             CcEEEEEEEEEeECCCcEEEEEECCEE
Confidence            346789999873 4 457899998753

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.67  E-value=1.4  Score=24.82  Aligned_cols=24  Identities=8%  Similarity=0.116  Sum_probs=16.4

Q ss_pred             ccceeeEEeecCC-C-ccEEEEecCC
Q psy534           11 FQMLSVGDFADDE-D-IPVYIWYDSY   34 (145)
Q Consensus        11 ~~~~~~~~w~~g~-p-~p~~~w~k~~   34 (145)
                      ...+.++|.+.|. | ...+.|.+++
T Consensus        20 ~~~~~l~Cl~~gf~P~~i~v~W~~~~   45 (102)
T d1mjuh2          20 GSSVTLGCLVKGYFPEPVTLTWNSGS   45 (102)
T ss_dssp             --CEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CCcEEEEEEEeeeeCCCeEEEECcCC
Confidence            4568899999974 4 3478996665

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.40  E-value=1.5  Score=24.64  Aligned_cols=26  Identities=8%  Similarity=-0.015  Sum_probs=18.3

Q ss_pred             ccceeeEEeecCC-Cc---cEEEEecCCCC
Q psy534           11 FQMLSVGDFADDE-DI---PVYIWYDSYPT   36 (145)
Q Consensus        11 ~~~~~~~~w~~g~-p~---p~~~w~k~~~~   36 (145)
                      .....++|.+.|- |.   ..+.|++++..
T Consensus        16 ~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~   45 (103)
T d1fp5a1          16 RKSPTITCLVVDLAPSKGTVNLTWSRASGK   45 (103)
T ss_dssp             TCCCEEEEEEEESSCCSSCCEEEEEETTCC
T ss_pred             CCCeEEEEEEEeeECCCceEEEEEcCCCce
Confidence            4567899999873 43   36778888754