Psyllid ID: psy5351

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-----
Protein Sequence
MVEVWFQNRRTKWRKKHAAEMATAKRKQDQVEESEEEEEDDYRHSDNAAKRLRRELAAHCGVQNM
Secondary Structure (PSIPRED)
cEEEHHcHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MVEVWFQNRRTKWRKKHAAEMATAKRkqdqveeseeeeeddyrhsDNAAKRLRRELAAHCGVQNM
Flexible Loop (DISEMBL)
mvevwfqnrrtkwrkkhaaematakrkqdqveeseeeeeddyrhsdnaAKRLRRELAahcgvqnm
Low Complexity Region (SEG)
MVEVWFQNRRTKWRKKHAAEMATAKRKQDQVeeseeeeeDDYRHSDNAAKRLRRELAAHCGVQNM
Disordered region (IsUnstruct)
*****************************************************************
Disordered Region (DISOPRED)
MVEVWF*NRRT******************************************************
Disordered Region (DISEMBL)
MVEVWFQNR*************************************NAAKRLRRELAAHCGVQNM
Disordered Region (DISPRO)
MVEVWFQNRRTKWRKKHAA*************************SDNAAKRLRRELAAHCG****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVEVWFQNRRTKWRKKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLAAHCGVQNM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	65	2.2.26 [Sep-21-2011]
Q60554	364	Homeobox protein Nkx-6.1	N/A	N/A	0.615	0.109	0.755	3e-12
P78426	367	Homeobox protein Nkx-6.1	yes	N/A	0.615	0.108	0.755	5e-12
O35762	365	Homeobox protein Nkx-6.1	yes	N/A	0.615	0.109	0.733	6e-12
Q99MA9	365	Homeobox protein Nkx-6.1	yes	N/A	0.615	0.109	0.733	2e-11
Q9C056	277	Homeobox protein Nkx-6.2	no	N/A	0.630	0.148	0.595	4e-10

>sp|Q60554|NKX61_MESAU Homeobox protein Nkx-6.1 OS=Mesocricetus auratus GN=NKX6-1 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/45 (75%), Positives = 36/45 (80%), Gaps = 5/45 (11%)

Query: 2   VEVWFQNRRTKWRKKHAAEMATAKRKQDQVEE-----SEEEEEDD 41
           V+VWFQNRRTKWRKKHAAEMATAK+KQD   E     SE EEEDD
Sbjct: 280 VKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGTSENEEEDD 324

Together with NKX2-2 and IRX3 acts to restrict the generation of motor neurons to the appropriate region of the neural tube. Belongs to the class II proteins of neuronal progenitor factors, which are induced by SHH signals (By similarity). Transcription factor which binds to specific A/T-rich DNA sequences in the promoter regions of a number of genes. Involved in transcriptional regulation in islet beta cells. Binds to the insulin promoter and is involved in regulation of the insulin gene.
Mesocricetus auratus (taxid: 10036)

>sp|P78426|NKX61_HUMAN Homeobox protein Nkx-6.1 OS=Homo sapiens GN=NKX6-1 PE=2 SV=2

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/45 (75%), Positives = 36/45 (80%), Gaps = 5/45 (11%)

Query: 2   VEVWFQNRRTKWRKKHAAEMATAKRKQDQVEE-----SEEEEEDD 41
           V+VWFQNRRTKWRKKHAAEMATAK+KQD   E     SE EEEDD
Sbjct: 280 VKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGASENEEEDD 324

Transcription factor which binds to specific A/T-rich DNA sequences in the promoter regions of a number of genes. Involved in transcriptional regulation in islet beta cells. Binds to the insulin promoter and is involved in regulation of the insulin gene. Together with NKX2-2 and IRX3 acts to restrict the generation of motor neurons to the appropriate region of the neural tube. Belongs to the class II proteins of neuronal progenitor factors, which are induced by SHH signals.

Homo sapiens (taxid: 9606)

>sp|O35762|NKX61_RAT Homeobox protein Nkx-6.1 OS=Rattus norvegicus GN=Nkx6-1 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/45 (73%), Positives = 36/45 (80%), Gaps = 5/45 (11%)

Query: 2   VEVWFQNRRTKWRKKHAAEMATAKRKQDQVEE-----SEEEEEDD 41
           V+VWFQNRRTKWRKKHAAEMATAK+KQD   E     SE EE+DD
Sbjct: 281 VKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGTSENEEDDD 325

Transcription factor which binds to specific A/T-rich DNA sequences in the promoter regions of a number of genes. Involved in transcriptional regulation in islet beta cells. Binds to the insulin promoter and is involved in regulation of the insulin gene. Together with NKX2-2 and IRX3 acts to restrict the generation of motor neurons to the appropriate region of the neural tube. Belongs to the class II proteins of neuronal progenitor factors, which are induced by SHH signals.

Rattus norvegicus (taxid: 10116)

>sp|Q99MA9|NKX61_MOUSE Homeobox protein Nkx-6.1 OS=Mus musculus GN=Nkx6-1 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/45 (73%), Positives = 36/45 (80%), Gaps = 5/45 (11%)

Query: 2   VEVWFQNRRTKWRKKHAAEMATAKRKQDQVEE-----SEEEEEDD 41
           V+VWFQNRRTKWRKKHAAEMATAK+KQD   E     SE EE+DD
Sbjct: 281 VKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGTSENEEDDD 325

Transcription factor which binds to specific A/T-rich DNA sequences in the promoter regions of a number of genes. Involved in transcriptional regulation in islet beta cells. Binds to the insulin promoter and is involved in regulation of the insulin gene. Together with NKX2-2 and IRX3 acts to restrict the generation of motor neurons to the appropriate region of the neural tube. Belongs to the class II proteins of neuronal progenitor factors, which are induced by SHH signals.

Mus musculus (taxid: 10090)

>sp|Q9C056|NKX62_HUMAN Homeobox protein Nkx-6.2 OS=Homo sapiens GN=NKX6-2 PE=2 SV=2

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/47 (59%), Positives = 37/47 (78%), Gaps = 6/47 (12%)

Query: 2   VEVWFQNRRTKWRKKHAAEMATAKRKQD------QVEESEEEEEDDY 42
           V+VWFQNRRTKWRK+HA EMA+AK+KQD      +V  S+ E++D+Y
Sbjct: 192 VKVWFQNRRTKWRKRHAVEMASAKKKQDSDAEKLKVGGSDAEDDDEY 238

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
328717132	266	PREDICTED: homeobox protein Nkx-6.2-like	0.861	0.210	0.724	4e-14
328777543	362	PREDICTED: homeobox protein Nkx-6.2-like	0.846	0.151	0.655	3e-12
383855980	365	PREDICTED: homeobox protein Nkx-6.2-like	0.846	0.150	0.655	3e-12
403263402	366	PREDICTED: homeobox protein Nkx-6.1 [Sai	0.615	0.109	0.755	7e-11
296196110	366	PREDICTED: homeobox protein Nkx-6.1 [Cal	0.615	0.109	0.755	8e-11
332819286	367	PREDICTED: LOW QUALITY PROTEIN: homeobox	0.615	0.108	0.777	1e-10
6016212	364	RecName: Full=Homeobox protein Nkx-6.1;	0.615	0.109	0.755	1e-10
395542187	379	PREDICTED: homeobox protein Nkx-6.1 [Sar	0.615	0.105	0.755	2e-10
345482709	428	PREDICTED: homeobox protein Nkx-6.2-like	0.892	0.135	0.512	2e-10
301755616	461	PREDICTED: LOW QUALITY PROTEIN: homeobox	0.615	0.086	0.755	2e-10

>gi|328717132|ref|XP_001943169.2| PREDICTED: homeobox protein Nkx-6.2-like [Acyrthosiphon pisum]

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 50/58 (86%), Gaps = 2/58 (3%)

Query: 2   VEVWFQNRRTKWRKKHAAEMATAKRKQDQVEESEEEEEDDYRHSDNAAKRLRRELAAH 59
           V+VWFQNRRTKWRKKHAAEMATAKRKQ+  E ++E +ED+    D+AAKRL+RELAAH
Sbjct: 192 VKVWFQNRRTKWRKKHAAEMATAKRKQE--EAADESDEDEDMRDDSAAKRLKRELAAH 247

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777543|ref|XP_001121097.2| PREDICTED: homeobox protein Nkx-6.2-like [Apis mellifera]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 46/61 (75%), Gaps = 6/61 (9%)

Query: 2   VEVWFQNRRTKWRKKHAAEMATAKRKQDQVEESEEEEEDDYR------HSDNAAKRLRRE 55
           V+VWFQNRRTKWRKKHAAEMATAKR+Q++VE    E ED         +S+ AAKRLRRE
Sbjct: 296 VKVWFQNRRTKWRKKHAAEMATAKRRQEEVEGVVAEGEDGCSDAEAEGNSETAAKRLRRE 355

Query: 56  L 56
           L
Sbjct: 356 L 356

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855980|ref|XP_003703488.1| PREDICTED: homeobox protein Nkx-6.2-like [Megachile rotundata]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 46/61 (75%), Gaps = 6/61 (9%)

Query: 2   VEVWFQNRRTKWRKKHAAEMATAKRKQDQVEESEEEEEDDYR------HSDNAAKRLRRE 55
           V+VWFQNRRTKWRKKHAAEMATAKR+Q++VE    E ED         +S+ AAKRLRRE
Sbjct: 299 VKVWFQNRRTKWRKKHAAEMATAKRRQEEVEGVVAEGEDGCSDTETDGNSETAAKRLRRE 358

Query: 56  L 56
           L
Sbjct: 359 L 359

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|403263402|ref|XP_003924023.1| PREDICTED: homeobox protein Nkx-6.1 [Saimiri boliviensis boliviensis]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/45 (75%), Positives = 36/45 (80%), Gaps = 5/45 (11%)

Query: 2   VEVWFQNRRTKWRKKHAAEMATAKRKQDQVEE-----SEEEEEDD 41
           V+VWFQNRRTKWRKKHAAEMATAK+KQD   E     SE EEEDD
Sbjct: 280 VKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGASENEEEDD 324

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|296196110|ref|XP_002745710.1| PREDICTED: homeobox protein Nkx-6.1 [Callithrix jacchus]

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/45 (75%), Positives = 36/45 (80%), Gaps = 5/45 (11%)

Query: 2   VEVWFQNRRTKWRKKHAAEMATAKRKQDQVEE-----SEEEEEDD 41
           V+VWFQNRRTKWRKKHAAEMATAK+KQD   E     SE EEEDD
Sbjct: 280 VKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGASENEEEDD 324

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332819286|ref|XP_003310328.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Nkx-6.1 [Pan troglodytes]

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/45 (77%), Positives = 36/45 (80%), Gaps = 5/45 (11%)

Query: 2   VEVWFQNRRTKWRKKHAAEMATAKRKQDQVEE-----SEEEEEDD 41
           V+VWFQNRRTKWRKKHAAEMATAKRKQD   E     SE EEEDD
Sbjct: 280 VKVWFQNRRTKWRKKHAAEMATAKRKQDSETERLKGASENEEEDD 324

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|6016212|sp|Q60554.1|NKX61_MESAU RecName: Full=Homeobox protein Nkx-6.1; AltName: Full=Homeobox protein NK-6 homolog A gi|587467|emb|CAA57166.1| NKx6.1 [Mesocricetus auratus]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/45 (75%), Positives = 36/45 (80%), Gaps = 5/45 (11%)

Query: 2   VEVWFQNRRTKWRKKHAAEMATAKRKQDQVEE-----SEEEEEDD 41
           V+VWFQNRRTKWRKKHAAEMATAK+KQD   E     SE EEEDD
Sbjct: 280 VKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGTSENEEEDD 324

Source: Mesocricetus auratus

Species: Mesocricetus auratus

Genus: Mesocricetus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395542187|ref|XP_003773016.1| PREDICTED: homeobox protein Nkx-6.1 [Sarcophilus harrisii]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/45 (75%), Positives = 36/45 (80%), Gaps = 5/45 (11%)

Query: 2   VEVWFQNRRTKWRKKHAAEMATAKRKQDQVEE-----SEEEEEDD 41
           V+VWFQNRRTKWRKKHAAEMATAK+KQD   E     SE EEEDD
Sbjct: 295 VKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGASENEEEDD 339

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345482709|ref|XP_001608197.2| PREDICTED: homeobox protein Nkx-6.2-like [Nasonia vitripennis]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 46/80 (57%), Gaps = 22/80 (27%)

Query: 2   VEVWFQNRRTKWRKKHAAEMATAKRKQDQVEESEEEEEDDYRHSD--------------- 46
           V+VWFQNRRTKWRKKHAAEMATAKR+Q++VE    E ED    +D               
Sbjct: 345 VKVWFQNRRTKWRKKHAAEMATAKRRQEEVEGVVGEAEDGCSDADADGSEPDKSQQHQPS 404

Query: 47  -------NAAKRLRRELAAH 59
                   AAKRLRREL  H
Sbjct: 405 STGTTPETAAKRLRRELEHH 424

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301755616|ref|XP_002913657.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Nkx-6.1-like [Ailuropoda melanoleuca]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/45 (75%), Positives = 36/45 (80%), Gaps = 5/45 (11%)

Query: 2   VEVWFQNRRTKWRKKHAAEMATAKRKQDQVEE-----SEEEEEDD 41
           V+VWFQNRRTKWRKKHAAEMATAK+KQD   E     SE EEEDD
Sbjct: 279 VKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGASENEEEDD 323

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
UNIPROTKB|F8VWZ9	61	NKX6-1 "Homeobox protein Nkx-6	0.784	0.836	0.568	1.2e-10
UNIPROTKB|E2RRG1	288	NKX6-1 "Uncharacterized protei	0.784	0.177	0.568	3.1e-10
UNIPROTKB|Q60554	364	NKX6-1 "Homeobox protein Nkx-6	0.784	0.140	0.568	5.8e-10
UNIPROTKB|E1BNQ7	366	NKX6-1 "Uncharacterized protei	0.784	0.139	0.568	5.9e-10
UNIPROTKB|P78426	367	NKX6-1 "Homeobox protein Nkx-6	0.784	0.138	0.568	5.9e-10
MGI|MGI:1206039	365	Nkx6-1 "NK6 homeobox 1" [Mus m	0.784	0.139	0.568	7.5e-10
RGD|69318	365	Nkx6-1 "NK6 homeobox 1" [Rattu	0.784	0.139	0.568	7.5e-10
FB|FBgn0040318	605	HGTX "HGTX" [Drosophila melano	0.707	0.076	0.630	8.8e-10
UNIPROTKB|F1MZR4	151	LOC516179 "Uncharacterized pro	0.430	0.185	0.857	1.8e-09
RGD|1307280	277	Nkx6-2 "NK6 homeobox 2" [Rattu	0.430	0.101	0.857	4.7e-09

UNIPROTKB|F8VWZ9 NKX6-1 "Homeobox protein Nkx-6.1" [Homo sapiens (taxid:9606)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 29/51 (56%), Positives = 34/51 (66%)

Query:     2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQVXXXXXXXXDDYRHSDNAAKRL 52
             V+VWFQNRRTKWRKKHAAEMATAK+KQD          ++    D+  K L
Sbjct:     6 VKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGASENEEEDDDYNKPL 56

GO:0003323 "type B pancreatic cell development" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0021912 "regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification" evidence=IEA

GO:0021913 "regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification" evidence=IEA

GO:0032024 "positive regulation of insulin secretion" evidence=IEA

GO:0035094 "response to nicotine" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045666 "positive regulation of neuron differentiation" evidence=IEA

GO:0045686 "negative regulation of glial cell differentiation" evidence=IEA

GO:0045687 "positive regulation of glial cell differentiation" evidence=IEA

GO:0048709 "oligodendrocyte differentiation" evidence=IEA

GO:0071345 "cellular response to cytokine stimulus" evidence=IEA

GO:0071375 "cellular response to peptide hormone stimulus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2RRG1 NKX6-1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 149 (57.5 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 29/51 (56%), Positives = 34/51 (66%)

Query:     2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQVXXXXXXXXDDYRHSDNAAKRL 52
             V+VWFQNRRTKWRKKHAAEMATAK+KQD          ++    D+  K L
Sbjct:   204 VKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGASENEEEDDDYNKPL 254

GO:0005634 "nucleus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0000976 "transcription regulatory region sequence-specific DNA binding" evidence=IEA

UNIPROTKB|Q60554 NKX6-1 "Homeobox protein Nkx-6.1" [Mesocricetus auratus (taxid:10036)]

 Score = 149 (57.5 bits), Expect = 5.8e-10, P = 5.8e-10
 Identities = 29/51 (56%), Positives = 34/51 (66%)

Query:     2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQVXXXXXXXXDDYRHSDNAAKRL 52
             V+VWFQNRRTKWRKKHAAEMATAK+KQD          ++    D+  K L
Sbjct:   280 VKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGTSENEEEDDDYNKPL 330

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0031016 "pancreas development" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0051594 "detection of glucose" evidence=IDA

GO:0072560 "type B pancreatic cell maturation" evidence=IMP

GO:2000078 "positive regulation of type B pancreatic cell development" evidence=IMP

UNIPROTKB|E1BNQ7 NKX6-1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 149 (57.5 bits), Expect = 5.9e-10, P = 5.9e-10
 Identities = 29/51 (56%), Positives = 34/51 (66%)

Query:     2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQVXXXXXXXXDDYRHSDNAAKRL 52
             V+VWFQNRRTKWRKKHAAEMATAK+KQD          ++    D+  K L
Sbjct:   278 VKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGASENEEEDDDYNKPL 328

GO:0005634 "nucleus" evidence=IEA

GO:0048709 "oligodendrocyte differentiation" evidence=IEA

GO:0045687 "positive regulation of glial cell differentiation" evidence=IEA

GO:0045686 "negative regulation of glial cell differentiation" evidence=IEA

GO:0045666 "positive regulation of neuron differentiation" evidence=IEA

GO:0031018 "endocrine pancreas development" evidence=IEA

GO:0021913 "regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification" evidence=IEA

GO:0021912 "regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0000976 "transcription regulatory region sequence-specific DNA binding" evidence=IEA

UNIPROTKB|P78426 NKX6-1 "Homeobox protein Nkx-6.1" [Homo sapiens (taxid:9606)]

 Score = 149 (57.5 bits), Expect = 5.9e-10, P = 5.9e-10
 Identities = 29/51 (56%), Positives = 34/51 (66%)

Query:     2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQVXXXXXXXXDDYRHSDNAAKRL 52
             V+VWFQNRRTKWRKKHAAEMATAK+KQD          ++    D+  K L
Sbjct:   280 VKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGASENEEEDDDYNKPL 330

GO:0000976 "transcription regulatory region sequence-specific DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0021912 "regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification" evidence=IEA

GO:0021913 "regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification" evidence=IEA

GO:0032024 "positive regulation of insulin secretion" evidence=IEA

GO:0035094 "response to nicotine" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0045666 "positive regulation of neuron differentiation" evidence=IEA

GO:0045686 "negative regulation of glial cell differentiation" evidence=IEA

GO:0045687 "positive regulation of glial cell differentiation" evidence=IEA

GO:0048709 "oligodendrocyte differentiation" evidence=IEA

GO:0071345 "cellular response to cytokine stimulus" evidence=IEA

GO:0071375 "cellular response to peptide hormone stimulus" evidence=IEA

GO:0009887 "organ morphogenesis" evidence=TAS

GO:0031018 "endocrine pancreas development" evidence=TAS

GO:2000078 "positive regulation of type B pancreatic cell development" evidence=ISS

GO:0072560 "type B pancreatic cell maturation" evidence=ISS

GO:0051594 "detection of glucose" evidence=ISS

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0031016 "pancreas development" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:1206039 Nkx6-1 "NK6 homeobox 1" [Mus musculus (taxid:10090)]

 Score = 148 (57.2 bits), Expect = 7.5e-10, P = 7.5e-10
 Identities = 29/51 (56%), Positives = 34/51 (66%)

Query:     2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQVXXXXXXXXDDYRHSDNAAKRL 52
             V+VWFQNRRTKWRKKHAAEMATAK+KQD          ++    D+  K L
Sbjct:   281 VKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGTSENEEDDDDYNKPL 331

GO:0000976 "transcription regulatory region sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO;TAS

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO;IMP

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO

GO:0007224 "smoothened signaling pathway" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008283 "cell proliferation" evidence=ISO

GO:0021912 "regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification" evidence=IGI

GO:0021913 "regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification" evidence=IMP

GO:0022008 "neurogenesis" evidence=ISO

GO:0030154 "cell differentiation" evidence=IGI;IMP

GO:0031018 "endocrine pancreas development" evidence=IGI;IMP

GO:0032024 "positive regulation of insulin secretion" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0044424 "intracellular part" evidence=IDA

GO:0045666 "positive regulation of neuron differentiation" evidence=IDA

GO:0045686 "negative regulation of glial cell differentiation" evidence=IGI

GO:0045687 "positive regulation of glial cell differentiation" evidence=IGI

GO:0048709 "oligodendrocyte differentiation" evidence=IGI

RGD|69318 Nkx6-1 "NK6 homeobox 1" [Rattus norvegicus (taxid:10116)]

 Score = 148 (57.2 bits), Expect = 7.5e-10, P = 7.5e-10
 Identities = 29/51 (56%), Positives = 34/51 (66%)

Query:     2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQVXXXXXXXXDDYRHSDNAAKRL 52
             V+VWFQNRRTKWRKKHAAEMATAK+KQD          ++    D+  K L
Sbjct:   281 VKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGTSENEEDDDDYNKPL 331

GO:0000976 "transcription regulatory region sequence-specific DNA binding" evidence=IEA

GO:0003323 "type B pancreatic cell development" evidence=IEP

GO:0003682 "chromatin binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IMP

GO:0007224 "smoothened signaling pathway" evidence=IEA;ISO

GO:0008283 "cell proliferation" evidence=IMP

GO:0021912 "regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification" evidence=IEA;ISO

GO:0021913 "regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification" evidence=IEA;ISO

GO:0022008 "neurogenesis" evidence=IMP

GO:0030154 "cell differentiation" evidence=ISO

GO:0031018 "endocrine pancreas development" evidence=ISO

GO:0032024 "positive regulation of insulin secretion" evidence=IMP

GO:0035094 "response to nicotine" evidence=IEP

GO:0042493 "response to drug" evidence=IEP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0044424 "intracellular part" evidence=ISO

GO:0045666 "positive regulation of neuron differentiation" evidence=IEA;ISO

GO:0045686 "negative regulation of glial cell differentiation" evidence=IEA;ISO

GO:0045687 "positive regulation of glial cell differentiation" evidence=IEA;ISO

GO:0048709 "oligodendrocyte differentiation" evidence=IEA;ISO

GO:0071345 "cellular response to cytokine stimulus" evidence=IEP

GO:0071375 "cellular response to peptide hormone stimulus" evidence=IEP

GO:0005730 "nucleolus" evidence=ISO

FB|FBgn0040318 HGTX "HGTX" [Drosophila melanogaster (taxid:7227)]

 Score = 151 (58.2 bits), Expect = 8.8e-10, P = 8.8e-10
 Identities = 29/46 (63%), Positives = 33/46 (71%)

Query:     2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQVXXXXXXXXDDYRHSDN 47
             V+VWFQNRRTKWRK+HAAEMATAKRKQD +         +   SDN
Sbjct:   528 VKVWFQNRRTKWRKRHAAEMATAKRKQDDMGGDNDGDCSETMDSDN 573

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007399 "nervous system development" evidence=IMP

GO:0000976 "transcription regulatory region sequence-specific DNA binding" evidence=IEA

GO:0007417 "central nervous system development" evidence=IGI

GO:0010629 "negative regulation of gene expression" evidence=IGI;IMP

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0070491 "repressing transcription factor binding" evidence=IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0030182 "neuron differentiation" evidence=IMP

UNIPROTKB|F1MZR4 LOC516179 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 24/28 (85%), Positives = 28/28 (100%)

Query:     2 VEVWFQNRRTKWRKKHAAEMATAKRKQD 29
             V+VWFQNRRTKWRK+HAAEMA+AK+KQD
Sbjct:    68 VKVWFQNRRTKWRKRHAAEMASAKKKQD 95

GO:0005634 "nucleus" evidence=IEA

GO:0050885 "neuromuscular process controlling balance" evidence=IEA

GO:0045687 "positive regulation of glial cell differentiation" evidence=IEA

GO:0045686 "negative regulation of glial cell differentiation" evidence=IEA

GO:0031018 "endocrine pancreas development" evidence=IEA

GO:0022010 "central nervous system myelination" evidence=IEA

GO:0021913 "regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification" evidence=IEA

GO:0021912 "regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification" evidence=IEA

GO:0010455 "positive regulation of cell fate commitment" evidence=IEA

GO:0010454 "negative regulation of cell fate commitment" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000976 "transcription regulatory region sequence-specific DNA binding" evidence=IEA

RGD|1307280 Nkx6-2 "NK6 homeobox 2" [Rattus norvegicus (taxid:10116)]

 Score = 138 (53.6 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 24/28 (85%), Positives = 28/28 (100%)

Query:     2 VEVWFQNRRTKWRKKHAAEMATAKRKQD 29
             V+VWFQNRRTKWRK+HAAEMA+AK+KQD
Sbjct:   192 VKVWFQNRRTKWRKRHAAEMASAKKKQD 219

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0000976 "transcription regulatory region sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0010454 "negative regulation of cell fate commitment" evidence=IEA;ISO

GO:0010455 "positive regulation of cell fate commitment" evidence=IEA;ISO

GO:0021912 "regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification" evidence=IEA;ISO

GO:0021913 "regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification" evidence=IEA;ISO

GO:0022010 "central nervous system myelination" evidence=IEA;ISO

GO:0030154 "cell differentiation" evidence=ISO

GO:0031018 "endocrine pancreas development" evidence=IEA;ISO

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0045686 "negative regulation of glial cell differentiation" evidence=IEA;ISO

GO:0045687 "positive regulation of glial cell differentiation" evidence=IEA;ISO

GO:0048709 "oligodendrocyte differentiation" evidence=ISO

GO:0050885 "neuromuscular process controlling balance" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P78426	NKX61_HUMAN	No assigned EC number	0.7555	0.6153	0.1089	yes	N/A
Q99MA9	NKX61_MOUSE	No assigned EC number	0.7333	0.6153	0.1095	yes	N/A
O35762	NKX61_RAT	No assigned EC number	0.7333	0.6153	0.1095	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	65
pfam00046	57	pfam00046, Homeobox, Homeobox domain	0.003

>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain

 Score = 31.7 bits (73), Expect = 0.003
 Identities = 10/14 (71%), Positives = 13/14 (92%)

Query: 2  VEVWFQNRRTKWRK 15
          V+VWFQNRR KW++
Sbjct: 44 VKVWFQNRRAKWKR 57

Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	65
KOG0847|consensus	288		99.4
KOG0489|consensus	261		99.3
KOG0487|consensus	308		99.14
KOG0484|consensus	125		99.12
KOG0488|consensus	309		99.09
KOG0843|consensus	197		98.93
KOG4577|consensus	383		98.93
KOG0850|consensus	245		98.93
KOG0492|consensus	246		98.91
KOG0842|consensus	307		98.9
KOG0848|consensus	317		98.87
KOG0485|consensus	268		98.79
KOG0494|consensus	332		98.79
KOG0491|consensus	194		98.76
KOG0844|consensus	408		98.67
KOG0483|consensus	198		98.5
KOG2251|consensus	228		98.48
COG5576	156	Homeodomain-containing transcription factor [Trans	98.47
KOG0490|consensus	235		98.33
KOG0493|consensus	342		97.97
KOG0486|consensus	351		97.61
KOG0849|consensus	354		96.84
KOG3802|consensus	398		96.83
KOG0490|consensus	235		95.88
KOG1168|consensus	385		95.54
KOG0775|consensus	304		89.37
KOG1146|consensus	1406		88.14

>KOG0847|consensus

Probab=99.40  E-value=8.5e-14  Score=96.43  Aligned_cols=59  Identities=54%  Similarity=0.877  Sum_probs=47.7

Q ss_pred             ceeecCchhHHHHHHHHhhHHHhhhhccccC------CCCCccccccc---CCchHHHHHhHHhhhcc
Q psy5351           2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQVE------ESEEEEEDDYR---HSDNAAKRLRRELAAHC   60 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~~~~~~~~~~~~~~------~~~~~~d~~~~---~s~~~~~~~r~e~~~~~   60 (65)
                      |+|||||||.||||....+..+++..+++..      ..++++||||+   +++++.++++..|.+|-
T Consensus       211 vkVWFQNRRTKWRKkhAaEmasakkkqds~ae~~~gg~~~eeeDDeYNkPLDPnSDDEKIt~LLkKHk  278 (288)
T KOG0847|consen  211 VKVWFQNRRTKWRKKHAAEMASAKKKQDSGAERGAGGAPSEEEDDEYNKPLDPNSDDEKITLLLKKHK  278 (288)
T ss_pred             HHHHHhcchhhhhhhhccchhhccccCCCcccccccCCCccccccccCCCCCCCcchHHHHHHHHhcc
Confidence            8999999999999999988888876555543      45667888888   56888889999887763

>KOG0489|consensus

Probab=99.30  E-value=3.6e-13  Score=93.14  Aligned_cols=22  Identities=45%  Similarity=1.097  Sum_probs=19.2

Q ss_pred             ceeecCchhHHHHHHHHhhHHH
Q psy5351           2 VEVWFQNRRTKWRKKHAAEMAT   23 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~~~~~   23 (65)
                      ||||||||||||||..+.....
T Consensus       203 IKIWFQNRRMK~Kk~~k~~~~~  224 (261)
T KOG0489|consen  203 IKIWFQNRRMKWKKENKAKSSQ  224 (261)
T ss_pred             HHHHHHHHHHHHHHhhcccccc
Confidence            8999999999999999865544

>KOG0487|consensus

Probab=99.14  E-value=1.1e-11  Score=88.13  Aligned_cols=18  Identities=50%  Similarity=0.887  Sum_probs=16.7

Q ss_pred             ceeecCchhHHHHHHHHh
Q psy5351           2 VEVWFQNRRTKWRKKHAA   19 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~   19 (65)
                      |||||||||||.||..+.
T Consensus       279 VKIWFQNRRMK~KK~~re  296 (308)
T KOG0487|consen  279 VKIWFQNRRMKEKKVNRE  296 (308)
T ss_pred             eeeeehhhhhHHhhhhhh
Confidence            999999999999999874

>KOG0484|consensus

Probab=99.12  E-value=2.2e-11  Score=76.32  Aligned_cols=24  Identities=54%  Similarity=0.951  Sum_probs=20.6

Q ss_pred             ceeecCchhHHHHHHHHhhHHHhh
Q psy5351           2 VEVWFQNRRTKWRKKHAAEMATAK   25 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~~~~~~~   25 (65)
                      |||||||||||+|||++.....+.
T Consensus        61 VQVWFQNRRAKfRKQEr~a~~~~~   84 (125)
T KOG0484|consen   61 VQVWFQNRRAKFRKQERAAIAKMA   84 (125)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHhh
Confidence            899999999999999997655544

>KOG0488|consensus

Probab=99.09  E-value=1.8e-11  Score=86.87  Aligned_cols=21  Identities=52%  Similarity=1.051  Sum_probs=18.1

Q ss_pred             ceeecCchhHHHHHHHHhhHH
Q psy5351           2 VEVWFQNRRTKWRKKHAAEMA   22 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~~~~   22 (65)
                      ||+|||||||||||+...+..
T Consensus       216 VKtWfQNRRtKWKrq~a~g~~  236 (309)
T KOG0488|consen  216 VKTWFQNRRTKWKRQTAEGGE  236 (309)
T ss_pred             HHHHHhhhhHHHHHHHHhhhc
Confidence            899999999999999886333

>KOG0843|consensus

Probab=98.93  E-value=3.2e-10  Score=76.31  Aligned_cols=19  Identities=53%  Similarity=1.011  Sum_probs=17.2

Q ss_pred             ceeecCchhHHHHHHHHhh
Q psy5351           2 VEVWFQNRRTKWRKKHAAE   20 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~~   20 (65)
                      |||||||||.|+||.+...
T Consensus       146 VkvWFQNRRtk~kr~~~e~  164 (197)
T KOG0843|consen  146 VKVWFQNRRTKHKRMQQED  164 (197)
T ss_pred             hhhhhhhhhHHHHHHHHHh
Confidence            8999999999999988764

>KOG4577|consensus

Probab=98.93  E-value=3.1e-10  Score=81.24  Aligned_cols=21  Identities=43%  Similarity=0.737  Sum_probs=18.8

Q ss_pred             CceeecCchhHHHHHHHHhhH
Q psy5351           1 MVEVWFQNRRTKWRKKHAAEM   21 (65)
Q Consensus         1 vVKvWFQNRR~K~kK~~k~~~   21 (65)
                      ||||||||||||.||+.|...
T Consensus       210 VVQVWFQNRRAKEKRLKKDAG  230 (383)
T KOG4577|consen  210 VVQVWFQNRRAKEKRLKKDAG  230 (383)
T ss_pred             ehhhhhhhhhHHHHhhhhhcc
Confidence            899999999999999998533

>KOG0850|consensus

Probab=98.93  E-value=2.7e-10  Score=78.80  Aligned_cols=17  Identities=53%  Similarity=1.118  Sum_probs=16.6

Q ss_pred             ceeecCchhHHHHHHHH
Q psy5351           2 VEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k   18 (65)
                      |||||||||.|+||+.+
T Consensus       166 VKIWFQNrRSK~KKl~k  182 (245)
T KOG0850|consen  166 VKIWFQNRRSKFKKLKK  182 (245)
T ss_pred             hhhhhhhhHHHHHHHHh
Confidence            89999999999999998

>KOG0492|consensus

Probab=98.91  E-value=4.7e-10  Score=77.13  Aligned_cols=25  Identities=44%  Similarity=0.783  Sum_probs=22.2

Q ss_pred             ceeecCchhHHHHHHHHhhHHHhhh
Q psy5351           2 VEVWFQNRRTKWRKKHAAEMATAKR   26 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~~~~~~~~   26 (65)
                      |||||||||+|-||++..+..+.+-
T Consensus       188 VKIWFQNRRAKaKRlQeae~Ek~km  212 (246)
T KOG0492|consen  188 VKIWFQNRRAKAKRLQEAELEKLKM  212 (246)
T ss_pred             eehhhhhhhHHHHHHHHHHHHHhhh
Confidence            8999999999999999987777663

>KOG0842|consensus

Probab=98.90  E-value=4.6e-10  Score=79.99  Aligned_cols=29  Identities=31%  Similarity=0.526  Sum_probs=23.1

Q ss_pred             ceeecCchhHHHHHHHHhhHHHhhhhccc
Q psy5351           2 VEVWFQNRRTKWRKKHAAEMATAKRKQDQ   30 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~~~~~~~~~~~~   30 (65)
                      |||||||||.|-||+++............
T Consensus       197 VKIWFQNrRYK~KR~~~dk~~~~~~~~~~  225 (307)
T KOG0842|consen  197 VKIWFQNRRYKTKRQQKDKALEALLLASS  225 (307)
T ss_pred             eeeeeecchhhhhhhhhhhhhhcccCCCC
Confidence            99999999999999999766665544443

>KOG0848|consensus

Probab=98.87  E-value=7.6e-10  Score=78.34  Aligned_cols=20  Identities=50%  Similarity=0.876  Sum_probs=18.3

Q ss_pred             ceeecCchhHHHHHHHHhhH
Q psy5351           2 VEVWFQNRRTKWRKKHAAEM   21 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~~~   21 (65)
                      |||||||||||.||+.|...
T Consensus       243 VKIWFQNRRAKERK~nKKk~  262 (317)
T KOG0848|consen  243 VKIWFQNRRAKERKDNKKKR  262 (317)
T ss_pred             hhHhhhhhhHHHHHHHHHHH
Confidence            89999999999999998764

>KOG0485|consensus

Probab=98.79  E-value=1.6e-09  Score=75.05  Aligned_cols=23  Identities=52%  Similarity=1.168  Sum_probs=19.3

Q ss_pred             ceeecCchhHHHHHHHHhhHHHh
Q psy5351           2 VEVWFQNRRTKWRKKHAAEMATA   24 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~~~~~~   24 (65)
                      |||||||||-||||+-.......
T Consensus       148 VKIWFQNRRnKwKRq~aad~ea~  170 (268)
T KOG0485|consen  148 VKIWFQNRRNKWKRQYAADLEAA  170 (268)
T ss_pred             hhhhhhhhhHHHHHHHhhhhhhh
Confidence            89999999999999987655443

>KOG0494|consensus

Probab=98.79  E-value=1.1e-09  Score=77.44  Aligned_cols=18  Identities=61%  Similarity=1.307  Sum_probs=16.6

Q ss_pred             ceeecCchhHHHHHHHHh
Q psy5351           2 VEVWFQNRRTKWRKKHAA   19 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~   19 (65)
                      ||||||||||||||.++.
T Consensus       185 IqVWfQNRRAKWRk~Ek~  202 (332)
T KOG0494|consen  185 IQVWFQNRRAKWRKTEKR  202 (332)
T ss_pred             hhHHhhhhhHHhhhhhhh
Confidence            799999999999999884

>KOG0491|consensus

Probab=98.76  E-value=1.3e-09  Score=72.85  Aligned_cols=18  Identities=50%  Similarity=0.948  Sum_probs=16.8

Q ss_pred             ceeecCchhHHHHHHHHh
Q psy5351           2 VEVWFQNRRTKWRKKHAA   19 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~   19 (65)
                      ||+||||||||+||+.+.
T Consensus       144 VKTWFQNrRMK~Kk~~r~  161 (194)
T KOG0491|consen  144 VKTWFQNRRMKHKKQQRN  161 (194)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            899999999999999884

>KOG0844|consensus

Probab=98.67  E-value=4.9e-09  Score=75.67  Aligned_cols=17  Identities=47%  Similarity=0.950  Sum_probs=15.7

Q ss_pred             ceeecCchhHHHHHHHH
Q psy5351           2 VEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k   18 (65)
                      |||||||||||-|||.-
T Consensus       225 IKVWFQNRRMKDKRQRl  241 (408)
T KOG0844|consen  225 IKVWFQNRRMKDKRQRL  241 (408)
T ss_pred             eehhhhhchhhhhhhhh
Confidence            89999999999999864

>KOG0483|consensus

Probab=98.50  E-value=1.2e-08  Score=69.04  Aligned_cols=17  Identities=59%  Similarity=1.320  Sum_probs=15.1

Q ss_pred             ceeecCchhHHHHHHHH
Q psy5351           2 VEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k   18 (65)
                      |+||||||||+||..+-
T Consensus        94 VavWFQNRRARwK~kql  110 (198)
T KOG0483|consen   94 VAVWFQNRRARWKTKQL  110 (198)
T ss_pred             HHHHHhhccccccchhh
Confidence            88999999999998654

>KOG2251|consensus

Probab=98.48  E-value=4.2e-08  Score=67.55  Aligned_cols=20  Identities=45%  Similarity=0.948  Sum_probs=18.2

Q ss_pred             CceeecCchhHHHHHHHHhh
Q psy5351           1 MVEVWFQNRRTKWRKKHAAE   20 (65)
Q Consensus         1 vVKvWFQNRR~K~kK~~k~~   20 (65)
                      .|||||.|||+|+|++++..
T Consensus        80 rVqVWFKNRRAK~r~qq~qq   99 (228)
T KOG2251|consen   80 RVQVWFKNRRAKCRRQQQQQ   99 (228)
T ss_pred             hhhhhhccccchhhHhhhhh
Confidence            49999999999999999864

>COG5576 Homeodomain-containing transcription factor [Transcription]

Probab=98.47  E-value=3.7e-08  Score=64.41  Aligned_cols=22  Identities=41%  Similarity=0.862  Sum_probs=18.7

Q ss_pred             ceeecCchhHHHHHHHHhhHHH
Q psy5351           2 VEVWFQNRRTKWRKKHAAEMAT   23 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~~~~~   23 (65)
                      |||||||||++.|+....+...
T Consensus        95 VqIWFQNkR~~~k~~~~~~~~~  116 (156)
T COG5576          95 VQIWFQNKRAKEKKKRSGKVEQ  116 (156)
T ss_pred             hhhhhchHHHHHHHhcccchhc
Confidence            8999999999999998764444

>KOG0490|consensus

Probab=98.33  E-value=1.2e-07  Score=62.39  Aligned_cols=18  Identities=61%  Similarity=0.951  Sum_probs=16.5

Q ss_pred             CceeecCchhHHHHHHHH
Q psy5351           1 MVEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         1 vVKvWFQNRR~K~kK~~k   18 (65)
                      .|||||||||+||+++.+
T Consensus       103 rVqvwFqnrrak~r~~~~  120 (235)
T KOG0490|consen  103 RVQVWFQNRRAKDRKEER  120 (235)
T ss_pred             eeehhhhhhcHhhhhhhc
Confidence            389999999999999986

>KOG0493|consensus

Probab=97.97  E-value=1.5e-06  Score=61.84  Aligned_cols=22  Identities=32%  Similarity=0.741  Sum_probs=17.6

Q ss_pred             ceeecCchhHHHHHHHHhhHHH
Q psy5351           2 VEVWFQNRRTKWRKKHAAEMAT   23 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~~~~~   23 (65)
                      |||||||.|+|+||-.-..+..
T Consensus       290 IKIWFQNKRAKiKKsTgskn~l  311 (342)
T KOG0493|consen  290 IKIWFQNKRAKIKKSTGSKNRL  311 (342)
T ss_pred             hhHHhhhhhhhhhhccCCCCch
Confidence            7999999999999976544333

>KOG0486|consensus

Probab=97.61  E-value=1.8e-05  Score=57.29  Aligned_cols=20  Identities=55%  Similarity=1.197  Sum_probs=17.7

Q ss_pred             ceeecCchhHHHHHHHHhhH
Q psy5351           2 VEVWFQNRRTKWRKKHAAEM   21 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~~~   21 (65)
                      |.|||.|||+||||.++-..
T Consensus       156 vrvwfknrrakwrkrErN~~  175 (351)
T KOG0486|consen  156 VRVWFKNRRAKWRKRERNQQ  175 (351)
T ss_pred             hhhhcccchhhhhhhhhhHH
Confidence            78999999999999988655

>KOG0849|consensus

Probab=96.84  E-value=0.0002  Score=51.73  Aligned_cols=17  Identities=71%  Similarity=1.525  Sum_probs=15.8

Q ss_pred             ceeecCchhHHHHHHHH
Q psy5351           2 VEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k   18 (65)
                      |+|||+|||+||+|+..
T Consensus       220 iqvwf~nrra~~rr~~~  236 (354)
T KOG0849|consen  220 VQVWFQNRRAKWRRQHR  236 (354)
T ss_pred             HHHHHhhhhhhhhhccc
Confidence            78999999999999984

>KOG3802|consensus

Probab=96.83  E-value=0.00024  Score=52.50  Aligned_cols=18  Identities=44%  Similarity=0.796  Sum_probs=16.9

Q ss_pred             CceeecCchhHHHHHHHH
Q psy5351           1 MVEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         1 vVKvWFQNRR~K~kK~~k   18 (65)
                      ||.|||=|||-|.||...
T Consensus       337 VVRVWFCNRRQkeKR~~~  354 (398)
T KOG3802|consen  337 VVRVWFCNRRQKEKRITP  354 (398)
T ss_pred             eEEEEeeccccccccCCC
Confidence            899999999999999876

>KOG0490|consensus

Probab=95.88  E-value=0.0029  Score=41.44  Aligned_cols=18  Identities=56%  Similarity=1.082  Sum_probs=16.1

Q ss_pred             CceeecCchhHHHHHHHH
Q psy5351           1 MVEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         1 vVKvWFQNRR~K~kK~~k   18 (65)
                      ||+|||||+|++.++...
T Consensus       196 ~~q~~~~~~~~~~~~~~~  213 (235)
T KOG0490|consen  196 VIQVWFQNRRAKLRKHKR  213 (235)
T ss_pred             hhhhhcccHHHHHHhhcc
Confidence            589999999999999765

>KOG1168|consensus

Probab=95.54  E-value=0.0057  Score=44.47  Aligned_cols=19  Identities=37%  Similarity=0.758  Sum_probs=16.8

Q ss_pred             CceeecCchhHHHHHHHHh
Q psy5351           1 MVEVWFQNRRTKWRKKHAA   19 (65)
Q Consensus         1 vVKvWFQNRR~K~kK~~k~   19 (65)
                      ||.|||=|.|.|+||....
T Consensus       352 VVRVWFCNQRQKQKRm~~S  370 (385)
T KOG1168|consen  352 VVRVWFCNQRQKQKRMKRS  370 (385)
T ss_pred             eEEEEeeccHHHHHHhhhh
Confidence            7999999999999997653

>KOG0775|consensus

Probab=89.37  E-value=0.11  Score=37.39  Aligned_cols=13  Identities=54%  Similarity=1.107  Sum_probs=10.5

Q ss_pred             cee--ecCchhHHHH
Q psy5351           2 VEV--WFQNRRTKWR   14 (65)
Q Consensus         2 VKv--WFQNRR~K~k   14 (65)
                      +||  ||.|||..-|
T Consensus       218 tQVsNWFKNRRQRDR  232 (304)
T KOG0775|consen  218 TQVSNWFKNRRQRDR  232 (304)
T ss_pred             hhhhhhhhhhhhhhh
Confidence            455  9999998777

>KOG1146|consensus

Probab=88.14  E-value=0.14  Score=43.02  Aligned_cols=18  Identities=44%  Similarity=0.870  Sum_probs=16.5

Q ss_pred             CceeecCchhHHHHHHHH
Q psy5351           1 MVEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         1 vVKvWFQNRR~K~kK~~k   18 (65)
                      ||+|||||=|.|-+|+..
T Consensus       946 ~i~vw~qna~~~s~k~~~  963 (1406)
T KOG1146|consen  946 VIQVWFQNARAKSKKAKL  963 (1406)
T ss_pred             hhHHhhhhhhhhhhhhhh
Confidence            799999999999999866

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	65
2nzz_A	37	Penetratin conjugated GAS (374-394) peptide; confo	99.36
2cue_A	80	Paired box protein PAX6; homeobox domain, transcri	98.97
2ecb_A	89	Zinc fingers and homeoboxes protein 1; homeobox do	98.88
1puf_A	77	HOX-1.7, homeobox protein HOX-A9; homeodomian, pro	98.87
1uhs_A	72	HOP, homeodomain only protein; structural genomics	98.85
2hi3_A	73	Homeodomain-only protein; transcription; NMR {Mus	98.84
2dms_A	80	Homeobox protein OTX2; homeobox domain, three heli	98.83
1ahd_P	68	Antennapedia protein mutant; DNA binding protein/D	98.83
1nk2_P	77	Homeobox protein VND; homeodomain, DNA-binding pro	98.83
1yz8_P	68	Pituitary homeobox 2; DNA binding protein, transcr	98.82
3a01_A	93	Homeodomain-containing protein; homeodomain, prote	98.82
2dmq_A	80	LIM/homeobox protein LHX9; homeobox domain, three	98.81
1zq3_P	68	PRD-4, homeotic bicoid protein; protein-DNA comple	98.81
2l9r_A	69	Homeobox protein NKX-3.1; structural genomics, nor	98.78
1ftt_A	68	TTF-1 HD, thyroid transcription factor 1 homeodoma	98.77
2da5_A	75	Zinc fingers and homeoboxes protein 3; homeobox do	98.76
2da4_A	80	Hypothetical protein DKFZP686K21156; homeobox doma	98.76
2dmp_A	89	Zinc fingers and homeoboxes protein 2; homeobox do	98.75
1b72_B	87	Protein (PBX1); homeodomain, DNA, complex, DNA-bin	98.72
2cuf_A	95	FLJ21616 protein; homeobox domain, hepatocyte tran	98.72
2m0c_A	75	Homeobox protein aristaless-like 4; structural gen	98.69
2ly9_A	74	Zinc fingers and homeoboxes protein 1; structural	98.69
2l7z_A	73	Homeobox protein HOX-A13; gene regulation; NMR {Ho	98.67
2ecc_A	76	Homeobox and leucine zipper protein homez; homeobo	98.67
3nar_A	96	ZHX1, zinc fingers and homeoboxes protein 1; corep	98.66
2k40_A	67	Homeobox expressed in ES cells 1; thermostable hom	98.62
2dn0_A	76	Zinc fingers and homeoboxes protein 3; triple home	98.61
1puf_B	73	PRE-B-cell leukemia transcription factor-1; homeod	98.61
2da6_A	102	Hepatocyte nuclear factor 1-beta; homeobox domain,	98.59
2xsd_C	164	POU domain, class 3, transcription factor 1; trans	98.56
1le8_B	83	Mating-type protein alpha-2; matalpha2, isothermal	98.51
2dmn_A	83	Homeobox protein TGIF2LX; TGFB-induced factor 2-li	98.44
3k2a_A	67	Homeobox protein MEIS2; homeobox domain, DNA-bindi	98.37
1lfb_A	99	Liver transcription factor (LFB1); transcription r	98.32
2d5v_A	164	Hepatocyte nuclear factor 6; transcription factor,	98.25
2da7_A	71	Zinc finger homeobox protein 1B; homeobox domain,	98.24
2lk2_A	89	Homeobox protein TGIF1; NESG, structural genomics,	97.96

>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A

Probab=99.36  E-value=4.4e-14  Score=72.59  Aligned_cols=18  Identities=50%  Similarity=1.208  Sum_probs=16.9

Q ss_pred             ceeecCchhHHHHHHHHh
Q psy5351           2 VEVWFQNRRTKWRKKHAA   19 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~   19 (65)
                      |+||||||||||||....
T Consensus         3 VkIWFQNRRaK~Kk~~~~   20 (37)
T 2nzz_A            3 IKIWFQNRRMKWKKRVFN   20 (37)
T ss_dssp             TTTTTTCSHHHHTSSHHH
T ss_pred             ceeccHHHHHHHHHHhHH
Confidence            899999999999999885

>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=98.97  E-value=6.3e-11  Score=67.95  Aligned_cols=21  Identities=43%  Similarity=1.050  Sum_probs=18.3

Q ss_pred             ceeecCchhHHHHHHHHhhHH
Q psy5351           2 VEVWFQNRRTKWRKKHAAEMA   22 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~~~~   22 (65)
                      |+|||||||||+||+.+....
T Consensus        51 V~vWFqNRR~k~kk~~~~~~~   71 (80)
T 2cue_A           51 IQVWFSNRRAKWRREEKLRNQ   71 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhhhc
Confidence            899999999999999886443

>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=98.88  E-value=3.2e-11  Score=71.56  Aligned_cols=17  Identities=18%  Similarity=0.609  Sum_probs=15.5

Q ss_pred             ceeecCchhHHHHHHHH
Q psy5351           2 VEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k   18 (65)
                      ||||||||||||+|..+
T Consensus        55 VkvWFqNRR~k~rk~~~   71 (89)
T 2ecb_A           55 IDAWFTEKKKSKALKEE   71 (89)
T ss_dssp             HHHHHHHHHHHHHSCCS
T ss_pred             CeecccccchHHHHHHH
Confidence            89999999999999765

>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A

Probab=98.87  E-value=2.1e-10  Score=65.35  Aligned_cols=18  Identities=50%  Similarity=0.938  Sum_probs=16.6

Q ss_pred             ceeecCchhHHHHHHHHh
Q psy5351           2 VEVWFQNRRTKWRKKHAA   19 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~   19 (65)
                      |+|||||||||+||..+.
T Consensus        57 V~vWFqNRR~k~kk~~k~   74 (77)
T 1puf_A           57 VKIWFQNRRMKMKKINKD   74 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            899999999999999874

>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.85  E-value=1.8e-10  Score=64.79  Aligned_cols=17  Identities=29%  Similarity=0.986  Sum_probs=15.8

Q ss_pred             ceeecCchhHHHHHHHH
Q psy5351           2 VEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k   18 (65)
                      |+|||||||||+||+.+
T Consensus        46 V~~WFqNRR~k~rk~~~   62 (72)
T 1uhs_A           46 TQKWFKQRLAEWRRSEG   62 (72)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             hhHHhHHHHHHHhhhcc
Confidence            89999999999999874

>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.84  E-value=2.2e-10  Score=64.66  Aligned_cols=17  Identities=29%  Similarity=0.986  Sum_probs=15.8

Q ss_pred             ceeecCchhHHHHHHHH
Q psy5351           2 VEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k   18 (65)
                      |+|||||||||+||+.+
T Consensus        47 V~~WFqNRR~k~rk~~~   63 (73)
T 2hi3_A           47 TQKWFKQRLAEWRRSEG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            89999999999999875

>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.83  E-value=7.3e-11  Score=67.61  Aligned_cols=18  Identities=50%  Similarity=1.030  Sum_probs=16.4

Q ss_pred             ceeecCchhHHHHHHHHh
Q psy5351           2 VEVWFQNRRTKWRKKHAA   19 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~   19 (65)
                      |+|||||||||+||+.+.
T Consensus        51 V~~WFqNRR~k~rk~~~~   68 (80)
T 2dms_A           51 VQVWFKNRRAKCRQQQQQ   68 (80)
T ss_dssp             HHHHHHHHHTHHHHTTCS
T ss_pred             hhhhhHHHhHHhhHHHHc
Confidence            899999999999998763

>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A

Probab=98.83  E-value=1.9e-10  Score=64.23  Aligned_cols=18  Identities=50%  Similarity=1.291  Sum_probs=16.3

Q ss_pred             ceeecCchhHHHHHHHHh
Q psy5351           2 VEVWFQNRRTKWRKKHAA   19 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~   19 (65)
                      |+|||||||||+||+.+.
T Consensus        46 V~vWFqNRR~k~kk~~~~   63 (68)
T 1ahd_P           46 IKIWFQNRRMKWKKENKT   63 (68)
T ss_dssp             HHHHHHHHHHHHHHHSCC
T ss_pred             hhHHhHHHHhHHhHhccc
Confidence            899999999999998763

>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A

Probab=98.83  E-value=3.4e-10  Score=64.46  Aligned_cols=18  Identities=39%  Similarity=0.822  Sum_probs=16.3

Q ss_pred             ceeecCchhHHHHHHHHh
Q psy5351           2 VEVWFQNRRTKWRKKHAA   19 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~   19 (65)
                      |+|||||||+|+||....
T Consensus        53 V~~WFqNRR~k~kr~~~~   70 (77)
T 1nk2_P           53 VKIWFQNHRYKTKRAQNE   70 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHhhcchhhhhcc
Confidence            899999999999998764

>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P

Probab=98.82  E-value=2.7e-10  Score=63.45  Aligned_cols=18  Identities=61%  Similarity=1.291  Sum_probs=16.4

Q ss_pred             ceeecCchhHHHHHHHHh
Q psy5351           2 VEVWFQNRRTKWRKKHAA   19 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~   19 (65)
                      |+|||||||+|+||..+.
T Consensus        47 V~~WFqNrR~k~rk~~~~   64 (68)
T 1yz8_P           47 VRVWFKNRRAKWRKREEF   64 (68)
T ss_dssp             HHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhHHHHHHhhc
Confidence            899999999999998764

>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}

Probab=98.82  E-value=3.1e-10  Score=66.94  Aligned_cols=18  Identities=67%  Similarity=1.343  Sum_probs=16.4

Q ss_pred             ceeecCchhHHHHHHHHh
Q psy5351           2 VEVWFQNRRTKWRKKHAA   19 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~   19 (65)
                      |+|||||||+|+||+...
T Consensus        61 V~vWFqNRR~k~kr~~~~   78 (93)
T 3a01_A           61 VKTWFQNRRTKWRRQTAE   78 (93)
T ss_dssp             HHHHHHHHHHHHHHHHTC
T ss_pred             cccccHhhhhhhhhhhHH
Confidence            899999999999998764

>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=1.9e-10  Score=65.69  Aligned_cols=18  Identities=44%  Similarity=0.977  Sum_probs=16.2

Q ss_pred             CceeecCchhHHHHHHHH
Q psy5351           1 MVEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         1 vVKvWFQNRR~K~kK~~k   18 (65)
                      .|+|||||||+|+||+..
T Consensus        50 qV~~WFqNrR~k~kk~~~   67 (80)
T 2dmq_A           50 VLQVWFQNARAKFRRNLL   67 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HhhHccHHHHHHHHHHHH
Confidence            389999999999999875

>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1

Probab=98.81  E-value=3.8e-10  Score=62.92  Aligned_cols=18  Identities=33%  Similarity=0.864  Sum_probs=16.4

Q ss_pred             ceeecCchhHHHHHHHHh
Q psy5351           2 VEVWFQNRRTKWRKKHAA   19 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~   19 (65)
                      |+|||||||+|+|++.+.
T Consensus        46 V~~WFqNRR~k~kk~~~~   63 (68)
T 1zq3_P           46 VKIWFKNRRRRHKIQSDQ   63 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             hhHhhHHHHHHHHHHhcc
Confidence            899999999999999763

>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.78  E-value=8.5e-11  Score=66.74  Aligned_cols=17  Identities=53%  Similarity=1.003  Sum_probs=15.3

Q ss_pred             ceeecCchhHHHHHHHH
Q psy5351           2 VEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k   18 (65)
                      |||||||||+|+||+..
T Consensus        48 VqvWFqNRRak~kr~~~   64 (69)
T 2l9r_A           48 VKIWFQNRRYKTKRKQL   64 (69)
T ss_dssp             HHHHHHHHHHHSCCSSS
T ss_pred             eeecchhhhhhhhhhhh
Confidence            89999999999998754

>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1

Probab=98.77  E-value=3.4e-10  Score=63.11  Aligned_cols=18  Identities=39%  Similarity=0.859  Sum_probs=16.3

Q ss_pred             ceeecCchhHHHHHHHHh
Q psy5351           2 VEVWFQNRRTKWRKKHAA   19 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~   19 (65)
                      |+|||||||+|+|++.+.
T Consensus        46 V~~WFqNRR~k~kr~~~~   63 (68)
T 1ftt_A           46 VKIWFQNHRYKMKRQAKD   63 (68)
T ss_dssp             HHHHHHHHHHHHHHTTSC
T ss_pred             hHHHhHHHhhhhhhhhhH
Confidence            899999999999998763

>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.76  E-value=2.7e-10  Score=64.77  Aligned_cols=17  Identities=29%  Similarity=0.771  Sum_probs=15.8

Q ss_pred             ceeecCchhHHHHHHHH
Q psy5351           2 VEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k   18 (65)
                      |+|||||||||+||+.+
T Consensus        51 V~~WFqNRR~k~kk~~~   67 (75)
T 2da5_A           51 IDSWFSERRKKVNAEET   67 (75)
T ss_dssp             HHHHHHHHTTHHHHSSC
T ss_pred             hhHhhHHHHHHHHHhhh
Confidence            89999999999999875

>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.76  E-value=5.9e-10  Score=63.77  Aligned_cols=17  Identities=41%  Similarity=0.796  Sum_probs=15.1

Q ss_pred             CceeecCchhHHHHHHH
Q psy5351           1 MVEVWFQNRRTKWRKKH   17 (65)
Q Consensus         1 vVKvWFQNRR~K~kK~~   17 (65)
                      .|+|||||||+|+||..
T Consensus        55 qV~vWFqNrR~k~rk~~   71 (80)
T 2da4_A           55 IVRTWIGNRRRKYRLMG   71 (80)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HhhHhHHHHHHHHhhcc
Confidence            38999999999999964

>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.75  E-value=1.8e-10  Score=67.63  Aligned_cols=18  Identities=28%  Similarity=0.628  Sum_probs=16.2

Q ss_pred             ceeecCchhHHHHHHHHh
Q psy5351           2 VEVWFQNRRTKWRKKHAA   19 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~   19 (65)
                      |+|||||||+|+|++.+.
T Consensus        57 V~vWFqNRR~k~r~~~~~   74 (89)
T 2dmp_A           57 IDSWFSERRKLRDSMEQA   74 (89)
T ss_dssp             HHHHHHHHHHHHHTSCSC
T ss_pred             ccHhhHhHHHHHHHHhHh
Confidence            899999999999998763

>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P

Probab=98.72  E-value=1.3e-09  Score=63.05  Aligned_cols=21  Identities=29%  Similarity=0.615  Sum_probs=17.6

Q ss_pred             ceeecCchhHHHHHHHHhhHH
Q psy5351           2 VEVWFQNRRTKWRKKHAAEMA   22 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~~~~   22 (65)
                      |+|||||||+|+||.......
T Consensus        48 V~~WFqNrR~r~kk~~~~~~~   68 (87)
T 1b72_B           48 VSNWFGNKRIRYKKNIGKFQE   68 (87)
T ss_dssp             HHHHHHHHHHHHHHCGGGGHH
T ss_pred             HHHHHHHHHHHhhhccccccc
Confidence            899999999999998765433

>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=98.72  E-value=1.1e-09  Score=64.56  Aligned_cols=18  Identities=33%  Similarity=0.711  Sum_probs=16.5

Q ss_pred             ceeecCchhHHHHHHHHh
Q psy5351           2 VEVWFQNRRTKWRKKHAA   19 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~   19 (65)
                      |+|||||||+|+|++.+.
T Consensus        66 V~~WFqNRR~k~kr~~~~   83 (95)
T 2cuf_A           66 VYNWFANRRKEIKRRANI   83 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            899999999999999874

>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.69  E-value=3.3e-10  Score=63.64  Aligned_cols=18  Identities=67%  Similarity=1.326  Sum_probs=16.1

Q ss_pred             ceeecCchhHHHHHHHHh
Q psy5351           2 VEVWFQNRRTKWRKKHAA   19 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~   19 (65)
                      |+|||||||+|+||..+.
T Consensus        53 V~~WFqNrR~k~kk~~r~   70 (75)
T 2m0c_A           53 VQVWFQNRRAKWRKRERF   70 (75)
T ss_dssp             HHHHHHHHHHHHTCCCCC
T ss_pred             HHHHhHHHHHHHHHHHhh
Confidence            899999999999998663

>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.69  E-value=4.5e-10  Score=63.23  Aligned_cols=17  Identities=24%  Similarity=0.671  Sum_probs=15.6

Q ss_pred             ceeecCchhHHHHHHHH
Q psy5351           2 VEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k   18 (65)
                      |||||||||+|+||+..
T Consensus        50 V~~WFqNrR~k~kk~~~   66 (74)
T 2ly9_A           50 IKKWFSDTRYNQRNSKS   66 (74)
T ss_dssp             HHHHHHHHHHHTTTTTC
T ss_pred             eeeCChhHhHHHHhhCc
Confidence            89999999999999864

>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*

Probab=98.67  E-value=7.3e-10  Score=62.59  Aligned_cols=17  Identities=53%  Similarity=0.865  Sum_probs=15.5

Q ss_pred             ceeecCchhHHHHHHHH
Q psy5351           2 VEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k   18 (65)
                      |+|||||||+|+||...
T Consensus        51 V~vWFqNRR~k~kk~~~   67 (73)
T 2l7z_A           51 VTIWFQNRRVKEKKVIN   67 (73)
T ss_dssp             HHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHhHHHHHHhc
Confidence            89999999999999754

>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=98.67  E-value=1.2e-09  Score=63.26  Aligned_cols=18  Identities=17%  Similarity=0.427  Sum_probs=15.6

Q ss_pred             CceeecCchhHHHHHHHH
Q psy5351           1 MVEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         1 vVKvWFQNRR~K~kK~~k   18 (65)
                      .|||||||||||+|+..-
T Consensus        46 qIkvWFqNrR~k~Kk~~l   63 (76)
T 2ecc_A           46 EIIQWFGDTRYALKHGQL   63 (76)
T ss_dssp             HHHHHHHHHHHHHHHTCC
T ss_pred             HhhHHhHhhHHHHHHHHH
Confidence            389999999999999743

>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}

Probab=98.66  E-value=8.3e-10  Score=65.28  Aligned_cols=17  Identities=24%  Similarity=0.812  Sum_probs=15.3

Q ss_pred             ceeecCchhHHHHHHHH
Q psy5351           2 VEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k   18 (65)
                      |||||||||+|+||+.-
T Consensus        69 V~vWFqNRR~k~kk~~l   85 (96)
T 3nar_A           69 IVSWFGDTRYAWKNGNL   85 (96)
T ss_dssp             HHHHHHHHHHHHTTTCC
T ss_pred             eeecchhhhhHhhhhcc
Confidence            89999999999999753

>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}

Probab=98.62  E-value=1e-09  Score=60.85  Aligned_cols=17  Identities=47%  Similarity=1.156  Sum_probs=15.4

Q ss_pred             ceeecCchhHHHHHHHH
Q psy5351           2 VEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k   18 (65)
                      |+|||||||+|+|+..+
T Consensus        45 V~~WFqNrR~k~kr~~~   61 (67)
T 2k40_A           45 IQIWFQNRRAKLKRSHR   61 (67)
T ss_dssp             HHHHHHHHHHHHHCSCC
T ss_pred             hhHhhHhHHHHHhHhch
Confidence            89999999999998765

>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.61  E-value=5.3e-10  Score=63.49  Aligned_cols=17  Identities=35%  Similarity=0.731  Sum_probs=15.6

Q ss_pred             ceeecCchhHHHHHHHH
Q psy5351           2 VEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k   18 (65)
                      |+|||||||+|+||+.+
T Consensus        52 V~~WFqNrR~k~kk~~~   68 (76)
T 2dn0_A           52 VRKWFSDRRYHCRNLKG   68 (76)
T ss_dssp             HHHHHHHHHHHSSSCCS
T ss_pred             hhHHhHHHhHHHHHhcc
Confidence            89999999999999765

>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*

Probab=98.61  E-value=2.3e-09  Score=60.21  Aligned_cols=18  Identities=33%  Similarity=0.807  Sum_probs=16.0

Q ss_pred             ceeecCchhHHHHHHHHh
Q psy5351           2 VEVWFQNRRTKWRKKHAA   19 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~   19 (65)
                      |+|||||||+|+|+....
T Consensus        48 V~~WFqNrR~r~kk~~~~   65 (73)
T 1puf_B           48 VSNWFGNKRIRYKKNIGK   65 (73)
T ss_dssp             HHHHHHHHHHHHHHCTTT
T ss_pred             HHHHHHHHHhhccccccc
Confidence            899999999999998653

>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.59  E-value=4.7e-09  Score=63.78  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=18.9

Q ss_pred             CceeecCchhHHHHHHHHhhHHH
Q psy5351           1 MVEVWFQNRRTKWRKKHAAEMAT   23 (65)
Q Consensus         1 vVKvWFQNRR~K~kK~~k~~~~~   23 (65)
                      +|+|||||||+|+|+..+.....
T Consensus        70 ~V~~WFqNRR~k~kr~~~~~~~~   92 (102)
T 2da6_A           70 RVYNWFANRRKEEAFRQKLAMDA   92 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             ceeeeecchHHHHHHhhHhhhcc
Confidence            38999999999999998765443

>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}

Probab=98.56  E-value=1.7e-09  Score=69.55  Aligned_cols=19  Identities=47%  Similarity=0.809  Sum_probs=16.2

Q ss_pred             CceeecCchhHHHHHHHHh
Q psy5351           1 MVEVWFQNRRTKWRKKHAA   19 (65)
Q Consensus         1 vVKvWFQNRR~K~kK~~k~   19 (65)
                      +|+|||||||+|+||+.+.
T Consensus       142 qV~vWFqNRR~k~kr~~~~  160 (164)
T 2xsd_C          142 VVRVWFCNRRQKEKRMTPA  160 (164)
T ss_dssp             HHHHHHHHHHHHHTBSCC-
T ss_pred             hhhhhhHHhhHHHhhccCC
Confidence            4899999999999998753

>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*

Probab=98.51  E-value=3.8e-09  Score=60.95  Aligned_cols=17  Identities=24%  Similarity=0.480  Sum_probs=15.3

Q ss_pred             ceeecCchhHHHHHHHH
Q psy5351           2 VEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k   18 (65)
                      |+|||||||+|+|+...
T Consensus        49 V~~WFqNrR~r~kk~~~   65 (83)
T 1le8_B           49 IKNWVAARRAKEKTITI   65 (83)
T ss_dssp             HHHHHHHHHHHHTTSCC
T ss_pred             cccccHHHHcccccccc
Confidence            89999999999999754

>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}

Probab=98.44  E-value=1.3e-08  Score=58.77  Aligned_cols=17  Identities=24%  Similarity=0.475  Sum_probs=15.3

Q ss_pred             ceeecCchhHHHHHHHH
Q psy5351           2 VEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k   18 (65)
                      |+|||||||+|+++...
T Consensus        54 V~~WFqNrR~r~k~~~~   70 (83)
T 2dmn_A           54 ISNWFINARRRILPDML   70 (83)
T ss_dssp             HHHHHHHHHHHTHHHHT
T ss_pred             hhHHhhhhHhhhcHHHH
Confidence            89999999999998754

>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1

Probab=98.37  E-value=2e-08  Score=56.06  Aligned_cols=17  Identities=29%  Similarity=0.526  Sum_probs=14.7

Q ss_pred             ceeecCchhHHHHHHHH
Q psy5351           2 VEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k   18 (65)
                      |++||||||+|+||...
T Consensus        45 V~~WFqNrR~r~kk~~~   61 (67)
T 3k2a_A           45 VNNWFINARRRIVQPMI   61 (67)
T ss_dssp             HHHHHHHHHHHHHSCC-
T ss_pred             hhhhhHHHHHHHhHHHH
Confidence            88999999999998754

>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A

Probab=98.32  E-value=1e-08  Score=61.60  Aligned_cols=18  Identities=39%  Similarity=0.610  Sum_probs=14.4

Q ss_pred             ceeecCchhHHHHHHHHh
Q psy5351           2 VEVWFQNRRTKWRKKHAA   19 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~   19 (65)
                      |+|||||||||.++..+.
T Consensus        74 V~vWFqNRR~k~k~k~~~   91 (99)
T 1lfb_A           74 VYNWFANRRKEEAFRHKL   91 (99)
T ss_dssp             HHHHHHHHHHTTSCCC--
T ss_pred             eeeccHHHHHHHHHhchh
Confidence            899999999998876654

>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A

Probab=98.25  E-value=2.1e-08  Score=63.75  Aligned_cols=18  Identities=28%  Similarity=0.327  Sum_probs=14.3

Q ss_pred             ceeecCchhHHHHHHHHh
Q psy5351           2 VEVWFQNRRTKWRKKHAA   19 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k~   19 (65)
                      |+|||||||||+|+....
T Consensus       141 V~~WFqNrR~r~k~~~~~  158 (164)
T 2d5v_A          141 VSNFFMNARRRSLDKWLE  158 (164)
T ss_dssp             HHHHHHHHHHTSSCC---
T ss_pred             hhhcChhhhccccccCCC
Confidence            899999999999988654

>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.24  E-value=5.7e-08  Score=55.85  Aligned_cols=12  Identities=33%  Similarity=0.922  Sum_probs=10.7

Q ss_pred             CceeecCchhHH
Q psy5351           1 MVEVWFQNRRTK   12 (65)
Q Consensus         1 vVKvWFQNRR~K   12 (65)
                      ||||||||||+.
T Consensus        48 VVrVWFqNrRa~   59 (71)
T 2da7_A           48 FVKEWFEQRKVY   59 (71)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHhhcccc
Confidence            799999999973

>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}

Probab=97.96  E-value=8.1e-07  Score=52.72  Aligned_cols=17  Identities=29%  Similarity=0.440  Sum_probs=15.2

Q ss_pred             ceeecCchhHHHHHHHH
Q psy5351           2 VEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~k   18 (65)
                      |++||||||+++++...
T Consensus        52 V~~WF~NrR~R~kk~~~   68 (89)
T 2lk2_A           52 VCNWFINARRRLLPDML   68 (89)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHH
Confidence            78999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	65
d9anta_	56	a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila	0.002
d1b72a_	88	a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo	0.004

>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 56

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Antennapedia Homeodomain
species: Drosophila melanogaster [TaxId: 7227]

 Score = 30.1 bits (68), Expect = 0.002
 Identities = 9/16 (56%), Positives = 15/16 (93%)

Query: 2  VEVWFQNRRTKWRKKH 17
          +++WFQNRR KW+K++
Sbjct: 41 IKIWFQNRRMKWKKEN 56

>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein hox-b1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.4 bits (68), Expect = 0.004
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 2  VEVWFQNRRTKWRKKH 17
          V++WFQNRR K +K+ 
Sbjct: 71 VKIWFQNRRMKQKKRE 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	65
d1pufa_	77	Homeobox protein hox-a9 {Mouse (Mus musculus) [Tax	98.9
d1uhsa_	72	Homeodomain-only protein, Hop {Mouse (Mus musculus	98.89
d1zq3p1	67	Homeotic bicoid protein {Fruit fly (Drosophila mel	98.88
d2cufa1	82	Homeobox-containing protein 1, HMBOX1 (Flj21616) {	98.81
d2cuea1	68	Paired box protein pax6 {Human (Homo sapiens) [Tax	98.7
d1ftta_	68	Thyroid transcription factor 1 homeodomain {Rat (R	98.65
d1vnda_	77	VND/NK-2 protein {Fruit fly (Drosophila melanogast	98.51
d2ecba1	76	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	98.31
d2ecca1	76	Homeobox-leucine zipper protein Homez {Human (Homo	98.31
d1pufb_	73	pbx1 {Human (Homo sapiens) [TaxId: 9606]}	98.05

>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein hox-a9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=4.7e-11  Score=67.84  Aligned_cols=19  Identities=47%  Similarity=0.872  Sum_probs=17.0

Q ss_pred             CceeecCchhHHHHHHHHh
Q psy5351           1 MVEVWFQNRRTKWRKKHAA   19 (65)
Q Consensus         1 vVKvWFQNRR~K~kK~~k~   19 (65)
                      +|+|||||||+|+|++.+.
T Consensus        56 qV~iWFqNrR~k~kr~~~~   74 (77)
T d1pufa_          56 QVKIWFQNRRMKMKKINKD   74 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhHHHHHHHHHH
Confidence            4899999999999998774

>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeodomain-only protein, Hop
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=6e-11  Score=66.71  Aligned_cols=18  Identities=28%  Similarity=0.912  Sum_probs=15.9

Q ss_pred             CceeecCchhHHHHHHHH
Q psy5351           1 MVEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         1 vVKvWFQNRR~K~kK~~k   18 (65)
                      +|+|||||||||+||+..
T Consensus        45 ~VqvWFqNrRak~rk~~~   62 (72)
T d1uhsa_          45 QTQKWFKQRLAEWRRSEG   62 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhccC
Confidence            489999999999999864

>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeotic bicoid protein
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.88  E-value=7.9e-11  Score=65.16  Aligned_cols=18  Identities=33%  Similarity=0.850  Sum_probs=16.1

Q ss_pred             CceeecCchhHHHHHHHH
Q psy5351           1 MVEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         1 vVKvWFQNRR~K~kK~~k   18 (65)
                      .|+|||||||+|+||+..
T Consensus        44 ~V~iWFqNrR~k~kk~~~   61 (67)
T d1zq3p1          44 QVKIWFKNRRRRHKIQSD   61 (67)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             ceeeccccHHHhHhhhhh
Confidence            389999999999999865

>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox-containing protein 1, HMBOX1 (Flj21616)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.4e-10  Score=66.16  Aligned_cols=19  Identities=32%  Similarity=0.649  Sum_probs=16.7

Q ss_pred             CceeecCchhHHHHHHHHh
Q psy5351           1 MVEVWFQNRRTKWRKKHAA   19 (65)
Q Consensus         1 vVKvWFQNRR~K~kK~~k~   19 (65)
                      +|+|||||||+|+||+...
T Consensus        58 ~V~vWFqNRR~k~kk~~~~   76 (82)
T d2cufa1          58 KVYNWFANRRKEIKRRANI   76 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhhHHHHHHhhhH
Confidence            4899999999999998763

>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Paired box protein pax6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=7.3e-10  Score=61.31  Aligned_cols=20  Identities=45%  Similarity=1.114  Sum_probs=17.4

Q ss_pred             CceeecCchhHHHHHHHHhh
Q psy5351           1 MVEVWFQNRRTKWRKKHAAE   20 (65)
Q Consensus         1 vVKvWFQNRR~K~kK~~k~~   20 (65)
                      +|+|||||||+|+|++.+..
T Consensus        44 ~V~~WFqNrR~k~kr~~~~~   63 (68)
T d2cuea1          44 RIQVWFSNRRAKWRREEKLR   63 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             heeecCcchhHHHHhhhhhh
Confidence            48999999999999987753

>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Thyroid transcription factor 1 homeodomain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.65  E-value=5e-10  Score=62.06  Aligned_cols=18  Identities=39%  Similarity=0.846  Sum_probs=15.9

Q ss_pred             CceeecCchhHHHHHHHH
Q psy5351           1 MVEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         1 vVKvWFQNRR~K~kK~~k   18 (65)
                      +|+|||||||+|+|+..+
T Consensus        45 ~V~~WFqNrR~k~kk~~~   62 (68)
T d1ftta_          45 QVKIWFQNHRYKMKRQAK   62 (68)
T ss_dssp             HHHHHHHHHHHHHHHTTS
T ss_pred             ceeeecccHHHHHhhccc
Confidence            489999999999998754

>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: VND/NK-2 protein
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.51  E-value=4.7e-10  Score=63.45  Aligned_cols=18  Identities=39%  Similarity=0.804  Sum_probs=15.4

Q ss_pred             CceeecCchhHHHHHHHH
Q psy5351           1 MVEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         1 vVKvWFQNRR~K~kK~~k   18 (65)
                      +|+|||||||+|.||...
T Consensus        52 qV~~WFqNrR~k~kr~~~   69 (77)
T d1vnda_          52 QVKIWFQNHRYKTKRAQN   69 (77)
T ss_dssp             HHHHHHHHSSSSCSSSCC
T ss_pred             hhhhcchhHHHHHHHHhh
Confidence            489999999999998654

>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Zinc fingers and homeoboxes protein 1, ZHX1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=9.2e-09  Score=57.62  Aligned_cols=18  Identities=17%  Similarity=0.538  Sum_probs=15.0

Q ss_pred             CceeecCchhHHHHHHHH
Q psy5351           1 MVEVWFQNRRTKWRKKHA   18 (65)
Q Consensus         1 vVKvWFQNRR~K~kK~~k   18 (65)
                      .|+|||||||++.++..+
T Consensus        47 ~V~~WFqNrR~r~k~~~~   64 (76)
T d2ecba1          47 EIDAWFTEKKKSKALKEE   64 (76)
T ss_dssp             HHHHHHHHHHHHHHSCCS
T ss_pred             HHHHhHHHHHHHHHHHhH
Confidence            389999999998877654

>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox-leucine zipper protein Homez
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2.2e-08  Score=55.92  Aligned_cols=17  Identities=18%  Similarity=0.476  Sum_probs=14.8

Q ss_pred             CceeecCchhHHHHHHH
Q psy5351           1 MVEVWFQNRRTKWRKKH   17 (65)
Q Consensus         1 vVKvWFQNRR~K~kK~~   17 (65)
                      .|++||||||+|+|+..
T Consensus        46 qV~~WF~NrR~k~k~~~   62 (76)
T d2ecca1          46 EIIQWFGDTRYALKHGQ   62 (76)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhch
Confidence            38999999999999853

>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: pbx1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.7e-07  Score=51.83  Aligned_cols=16  Identities=38%  Similarity=0.906  Sum_probs=14.3

Q ss_pred             ceeecCchhHHHHHHH
Q psy5351           2 VEVWFQNRRTKWRKKH   17 (65)
Q Consensus         2 VKvWFQNRR~K~kK~~   17 (65)
                      |++||||||++.|+..
T Consensus        48 v~~WF~N~R~r~k~~~   63 (73)
T d1pufb_          48 VSNWFGNKRIRYKKNI   63 (73)
T ss_dssp             HHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHhcccc
Confidence            8899999999999764