Psyllid ID: psy5352


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
MVISSLVAGGIAGALAKTTIAPLDRTKINFQISNSPFSFGDAINFMIKSYKTEGITSLWRGNSATLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGALAKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITYPLDLARARMAVTVKAERRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPIALTRTRFVRRRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPIAVGISFATYDFIYEALTKFFLISHQPKIGRVNK
cHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccccc
cHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHccccHHHHHHccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHEEccccccHHHHHHHHHHHHHcccHEEEcccHHHHHHHccHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHccccHHHHHHHHHHHHEHHHHHHHHHHHHHHHccccccccccccc
MVISSLVAGGIAGALakttiapldrtkinfqisnspfsfgDAINFMIKSYKTegitslwrgnsaTLARIIphgalqftAHEQWKRILHvdntvdssKLLTTFEMVISSLVAGGIAGAlakttiapldrtkiNFQNLYNRFLAgslagvtsqsitypLDLARARMAVTVKAERRMQTSSITKKRADTILGVLRDIYREEGVRQGFFkglsmnwikgpialtRTRFVRRRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPIAVGISFATYDFIYEALTKFFLishqpkigrvnk
MVISSLVAGGIAgalakttiapldrtKINFQISNSPFSFGDAINFMIKSYKTEGITSLWRGNSATLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGALAKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITYPLDLARARMAVTVkaerrmqtssitkkradtilGVLRDIYREEGVRqgffkglsmnwikgpialtrtrfvrrrmqtssitkkradtilGVLRDIYREEGVRQGFFKGLSMNWIKGPIAVGISFATYDFIYEALTKFFlishqpkigrvnk
MVISSLVAGGIAGALAKTTIAPLDRTKINFQISNSPFSFGDAINFMIKSYKTEGITSLWRGNSATLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGALAKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITYPLDLARARMAVTVKAERRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPIALTRTRFVRRRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPIAVGISFATYDFIYEALTKFFLISHQPKIGRVNK
****SLVAGGIAGALAKTTIAPLDRTKINFQISNSPFSFGDAINFMIKSYKTEGITSLWRGNSATLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGALAKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITYPLDLARARMAVTVKAE*******ITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPIALTRTRFVRRRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPIAVGISFATYDFIYEALTKFFLISH*********
MVISSLVAGGIAGALAKTTIAPLDRTKINFQISNSPFSFGDAINFMIKSYKTEGITSLWRGNSATLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGALAKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITYPLDLARARMAVTVKAERRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPIALTRTRFVRRRMQ***********ILGVLRDIYREEGVRQGFFKGLSMNWIKGPIAVGISFATYDFIYEALTK***************
MVISSLVAGGIAGALAKTTIAPLDRTKINFQISNSPFSFGDAINFMIKSYKTEGITSLWRGNSATLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGALAKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITYPLDLARARMAVTVKAERRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPIALTRTRFVRRRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPIAVGISFATYDFIYEALTKFFLISHQPKIGRVNK
MVISSLVAGGIAGALAKTTIAPLDRTKINFQISNSPFSFGDAINFMIKSYKTEGITSLWRGNSATLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGALAKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITYPLDLARARMAVTVKAERRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPIALTRTRFVRRRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPIAVGISFATYDFIYEALTKFFLIS**********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVISSLVAGGIAGALAKTTIAPLDRTKINFQISNSPFSFGDAINFMIKSYKTEGITSLWRGNSATLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGALAKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITYPLDLARARMAVTVKAERRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPIALTRTRFVRRRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPIAVGISFATYDFIYEALTKFFLISHQPKIGRVNK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query305 2.2.26 [Sep-21-2011]
Q0P483321 Mitochondrial coenzyme A yes N/A 0.803 0.763 0.391 1e-49
Q5PQ27327 Mitochondrial coenzyme A N/A N/A 0.849 0.792 0.372 1e-46
Q05AQ3327 Mitochondrial coenzyme A yes N/A 0.806 0.752 0.378 2e-46
P0C546318 Mitochondrial coenzyme A yes N/A 0.809 0.776 0.399 3e-45
Q8R0Y8318 Mitochondrial coenzyme A yes N/A 0.809 0.776 0.399 3e-45
Q86VD7318 Mitochondrial coenzyme A yes N/A 0.809 0.776 0.392 6e-45
P16260332 Graves disease carrier pr no N/A 0.783 0.719 0.268 1e-25
Q54DU1297 Mitochondrial substrate c yes N/A 0.777 0.797 0.303 2e-25
Q8C0K5332 Graves disease carrier pr no N/A 0.773 0.710 0.265 3e-25
P16261322 Graves disease carrier pr no N/A 0.740 0.701 0.255 4e-21
>sp|Q0P483|S2542_DANRE Mitochondrial coenzyme A transporter SLC25A42 OS=Danio rerio GN=slc25a42 PE=2 SV=1 Back     alignment and function desciption
 Score =  197 bits (500), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 131/335 (39%), Positives = 171/335 (51%), Gaps = 90/335 (26%)

Query: 2   VISSLVAGGIAGALAKTTIAPLDRTKINFQISNSPFSFGDAINFMIKSYKTEGITSLWRG 61
           V++SLV+G  AGA+AKT +APLDRTKI FQ+S++ FS  +A   + ++Y  +G  SLWRG
Sbjct: 35  VLNSLVSGAFAGAVAKTAVAPLDRTKIIFQVSSNRFSAKEAYRLIYRTYLKDGFFSLWRG 94

Query: 62  NSATLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGALAKT 121
           NSAT+ R+IP+ A+QF AHEQ+K IL                        G   G   K 
Sbjct: 95  NSATMVRVIPYAAIQFCAHEQYKGIL------------------------GKYYGFQGK- 129

Query: 122 TIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITYPLDLARARMAVTVKAERRMQTSSITK 181
            + P+ R            LAGSLAG T+  ITYPLD+ RARMAVT             K
Sbjct: 130 ALPPVPR-----------LLAGSLAGTTAAIITYPLDMVRARMAVT------------PK 166

Query: 182 KRADTILGVLRDIYREEGVR---QGF---------FKGLSMNWIK-------------GP 216
           +    I+ V   I REEG++   +GF         + GLS    +              P
Sbjct: 167 EMYSNIMDVFVRISREEGLKTLYRGFTPTILGVVPYAGLSFFTYETLKKTHAEKTGRAHP 226

Query: 217 IALTRTRF-----------------VRRRMQTSSITKKRADTILGVLRDIYREEGVRQGF 259
               R  F                 VRRRMQT+ +T     T+LG +R+I  EEG+ +G 
Sbjct: 227 FPYERLVFGACAGLIGQSASYPLDVVRRRMQTAGVTGHTYSTVLGTMREIVAEEGIVRGL 286

Query: 260 FKGLSMNWIKGPIAVGISFATYDFIYEALTKFFLI 294
           +KGLSMNW+KGPIAVGISF T+D     L KF L+
Sbjct: 287 YKGLSMNWVKGPIAVGISFMTFDLTQILLRKFQLL 321





Danio rerio (taxid: 7955)
>sp|Q5PQ27|S2542_XENLA Mitochondrial coenzyme A transporter SLC25A42 OS=Xenopus laevis GN=slc25a42 PE=2 SV=1 Back     alignment and function description
>sp|Q05AQ3|S2542_XENTR Mitochondrial coenzyme A transporter SLC25A42 OS=Xenopus tropicalis GN=slc25a42 PE=2 SV=1 Back     alignment and function description
>sp|P0C546|S2542_RAT Mitochondrial coenzyme A transporter SLC25A42 OS=Rattus norvegicus GN=Slc25a42 PE=2 SV=1 Back     alignment and function description
>sp|Q8R0Y8|S2542_MOUSE Mitochondrial coenzyme A transporter SLC25A42 OS=Mus musculus GN=Slc25a42 PE=2 SV=1 Back     alignment and function description
>sp|Q86VD7|S2542_HUMAN Mitochondrial coenzyme A transporter SLC25A42 OS=Homo sapiens GN=SLC25A42 PE=2 SV=2 Back     alignment and function description
>sp|P16260|GDC_HUMAN Graves disease carrier protein OS=Homo sapiens GN=SLC25A16 PE=1 SV=3 Back     alignment and function description
>sp|Q54DU1|MCFP_DICDI Mitochondrial substrate carrier family protein P OS=Dictyostelium discoideum GN=mcfP PE=3 SV=1 Back     alignment and function description
>sp|Q8C0K5|GDC_MOUSE Graves disease carrier protein homolog OS=Mus musculus GN=Slc25a16 PE=2 SV=1 Back     alignment and function description
>sp|P16261|GDC_RAT Graves disease carrier protein (Fragment) OS=Rattus norvegicus GN=Slc25a16 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query305
350425074342 PREDICTED: solute carrier family 25 memb 0.826 0.736 0.464 2e-60
340709326338 PREDICTED: solute carrier family 25 memb 0.826 0.745 0.464 2e-59
383861097333 PREDICTED: solute carrier family 25 memb 0.826 0.756 0.464 4e-57
307207979348 Solute carrier family 25 member 42 [Harp 0.809 0.709 0.449 5e-56
322788185350 hypothetical protein SINV_08016 [Solenop 0.826 0.72 0.451 5e-56
332374950308 unknown [Dendroctonus ponderosae] 0.796 0.788 0.450 8e-56
110750141338 PREDICTED: solute carrier family 25 memb 0.836 0.754 0.444 1e-55
380023330338 PREDICTED: solute carrier family 25 memb 0.836 0.754 0.444 2e-55
157106907357 mitochondrial solute carrier protein, pu 0.813 0.694 0.445 2e-54
24648424365 alternative testis transcripts open read 0.813 0.679 0.420 3e-54
>gi|350425074|ref|XP_003494003.1| PREDICTED: solute carrier family 25 member 42-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 151/325 (46%), Positives = 183/325 (56%), Gaps = 73/325 (22%)

Query: 2   VISSLVAGGIAGALAKTTIAPLDRTKINFQISNSPFSFGDAINFMIKSYKTEGITSLWRG 61
           V +SLV+G IAGALAKTTIAPLDRTKINFQISN PFS   A+ F++ + KTEG+ SLWRG
Sbjct: 50  VWTSLVSGAIAGALAKTTIAPLDRTKINFQISNQPFSAKAAVRFLVNTLKTEGLLSLWRG 109

Query: 62  NSATLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGALAKT 121
           NSAT+ RI+P+ A+QFTAHEQWKRIL                         GI G+    
Sbjct: 110 NSATMVRIVPYSAVQFTAHEQWKRIL-------------------------GINGS---- 140

Query: 122 TIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITYPLDLARARMAVTVKAERRMQTSSITK 181
                +R K         FLAGSLAG+TSQ ITYPLDL RARMAVT KAE +       +
Sbjct: 141 -----EREKPGLN-----FLAGSLAGITSQGITYPLDLMRARMAVTQKAEYKTLRQIFVR 190

Query: 182 KRAD------------TILGV-------------LRDIYREEGVR-QGFFKGLSMNWIKG 215
              +            T+LGV             LR++     V   GF   L    I G
Sbjct: 191 IYVEEGILAYYRGFTATLLGVIPYAGCSFFTYDLLRNLLNVHTVAIPGFSTSLICGAIAG 250

Query: 216 PIALTRT---RFVRRRMQTSSI----TKKRADTILGVLRDIYREEGVRQGFFKGLSMNWI 268
            +A T +     VRRRMQTS+I      +   TI   +  IY+EEG+   F+KGLSMNW+
Sbjct: 251 MVAQTSSYPLDIVRRRMQTSAIHGPMNSQHYHTITSTVTKIYKEEGI-MAFYKGLSMNWV 309

Query: 269 KGPIAVGISFATYDFIYEALTKFFL 293
           KGPIAVGISFAT+D I +AL K  +
Sbjct: 310 KGPIAVGISFATHDLIRDALRKLII 334




Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709326|ref|XP_003393261.1| PREDICTED: solute carrier family 25 member 42-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383861097|ref|XP_003706023.1| PREDICTED: solute carrier family 25 member 42-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307207979|gb|EFN85538.1| Solute carrier family 25 member 42 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|322788185|gb|EFZ13967.1| hypothetical protein SINV_08016 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|332374950|gb|AEE62616.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|110750141|ref|XP_396993.3| PREDICTED: solute carrier family 25 member 42-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|380023330|ref|XP_003695476.1| PREDICTED: solute carrier family 25 member 42-like [Apis florea] Back     alignment and taxonomy information
>gi|157106907|ref|XP_001649538.1| mitochondrial solute carrier protein, putative [Aedes aegypti] gi|108868766|gb|EAT32991.1| AAEL014753-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|24648424|ref|NP_650891.1| alternative testis transcripts open reading frame A, isoform A [Drosophila melanogaster] gi|45553431|ref|NP_996244.1| alternative testis transcripts open reading frame A, isoform C [Drosophila melanogaster] gi|23175997|gb|AAF55774.2| alternative testis transcripts open reading frame A, isoform A [Drosophila melanogaster] gi|45446559|gb|AAS65181.1| alternative testis transcripts open reading frame A, isoform C [Drosophila melanogaster] gi|60677811|gb|AAX33412.1| RE52377p [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query305
FB|FBgn0067783365 att-ORFA "alternative testis t 0.386 0.323 0.527 2.9e-50
ZFIN|ZDB-GENE-060825-313326 slc25a42 "solute carrier famil 0.406 0.380 0.457 2.9e-44
UNIPROTKB|Q5PQ27327 slc25a42 "Mitochondrial coenzy 0.442 0.412 0.423 4.7e-44
UNIPROTKB|Q05AQ3327 slc25a42 "Mitochondrial coenzy 0.396 0.370 0.468 1.2e-43
RGD|1592346318 Slc25a42 "solute carrier famil 0.393 0.377 0.488 1.2e-43
UNIPROTKB|P0C546318 Slc25a42 "Mitochondrial coenzy 0.393 0.377 0.488 1.2e-43
MGI|MGI:1920345318 Slc25a42 "solute carrier famil 0.393 0.377 0.488 1.2e-43
UNIPROTKB|F1NH71300 SLC25A42 "Uncharacterized prot 0.406 0.413 0.465 1.8e-42
UNIPROTKB|Q86VD7318 SLC25A42 "Mitochondrial coenzy 0.396 0.380 0.476 1.8e-42
UNIPROTKB|E1B8B9318 SLC25A42 "Uncharacterized prot 0.396 0.380 0.468 1.8e-42
FB|FBgn0067783 att-ORFA "alternative testis transcripts open reading frame A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 330 (121.2 bits), Expect = 2.9e-50, Sum P(2) = 2.9e-50
 Identities = 67/127 (52%), Positives = 89/127 (70%)

Query:     2 VISSLVAGGIAGALAKTTIAPLDRTKINFQISNS-PFSFGDAINFMIKSYKTEGITSLWR 60
             V+ SL++G  AGALAKT IAPLDRTKINFQI N  PFSF  ++ ++  +Y  EG+ +LWR
Sbjct:    72 VVISLISGAAAGALAKTVIAPLDRTKINFQIRNDVPFSFRASLRYLQNTYANEGVLALWR 131

Query:    61 GNSATLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGALAK 120
             GNSAT+ARI+P+ A+QFTAHEQW+RILHVD    ++K            +AG +AG  ++
Sbjct:   132 GNSATMARIVPYAAIQFTAHEQWRRILHVDKDGTNTKG--------RRFLAGSLAGITSQ 183

Query:   121 TTIAPLD 127
             +   PLD
Sbjct:   184 SLTYPLD 190


GO:0016021 "integral to membrane" evidence=ISM
GO:0005740 "mitochondrial envelope" evidence=ISS
GO:0022857 "transmembrane transporter activity" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005743 "mitochondrial inner membrane" evidence=IEA
ZFIN|ZDB-GENE-060825-313 slc25a42 "solute carrier family 25, member 42" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5PQ27 slc25a42 "Mitochondrial coenzyme A transporter SLC25A42" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q05AQ3 slc25a42 "Mitochondrial coenzyme A transporter SLC25A42" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
RGD|1592346 Slc25a42 "solute carrier family 25, member 42" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P0C546 Slc25a42 "Mitochondrial coenzyme A transporter SLC25A42" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1920345 Slc25a42 "solute carrier family 25, member 42" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NH71 SLC25A42 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q86VD7 SLC25A42 "Mitochondrial coenzyme A transporter SLC25A42" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1B8B9 SLC25A42 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q54DU1MCFP_DICDINo assigned EC number0.30390.77700.7979yesN/A
Q05AQ3S2542_XENTRNo assigned EC number0.37820.80650.7522yesN/A
Q0P483S2542_DANRENo assigned EC number0.39100.80320.7632yesN/A
Q86VD7S2542_HUMANNo assigned EC number0.39290.80980.7767yesN/A
Q8R0Y8S2542_MOUSENo assigned EC number0.39930.80980.7767yesN/A
P0C546S2542_RATNo assigned EC number0.39930.80980.7767yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 3e-19
PTZ00169300 PTZ00169, PTZ00169, ADP/ATP transporter on adenyla 3e-15
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 1e-14
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 1e-11
PTZ00169300 PTZ00169, PTZ00169, ADP/ATP transporter on adenyla 1e-04
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
 Score = 80.8 bits (200), Expect = 3e-19
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 2  VISSLVAGGIAGALAKTTIAPLDRTKINFQI--SNSPFSFGDAINFMIKSYKTEGITSLW 59
           ++SL+AGGIAGA+A T   PLD  K   Q   +     +   ++   K YK EGI  L+
Sbjct: 5  FLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLY 64

Query: 60 RGNSATLARIIPHGALQFTAHEQWKRILH 88
          +G    L R+ P  A+ F  +E  K++L 
Sbjct: 65 KGLLPNLLRVAPAAAIYFGTYETLKKLLL 93


Length = 96

>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 305
KOG0764|consensus299 100.0
KOG0752|consensus320 100.0
KOG0753|consensus317 100.0
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 100.0
KOG0754|consensus294 100.0
KOG0760|consensus302 100.0
KOG0758|consensus297 100.0
KOG0757|consensus319 100.0
KOG0759|consensus286 100.0
PTZ00168259 mitochondrial carrier protein; Provisional 100.0
KOG0762|consensus311 100.0
KOG0751|consensus694 100.0
KOG0036|consensus463 100.0
KOG0769|consensus308 100.0
KOG0768|consensus323 100.0
KOG0761|consensus361 100.0
KOG0755|consensus320 100.0
KOG0756|consensus299 100.0
KOG0766|consensus297 100.0
KOG0765|consensus333 100.0
KOG0749|consensus298 100.0
KOG0770|consensus353 100.0
KOG0763|consensus301 100.0
KOG0750|consensus304 100.0
KOG0752|consensus320 100.0
KOG0767|consensus333 99.98
KOG0753|consensus317 99.96
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 99.96
KOG0764|consensus299 99.96
KOG0768|consensus323 99.96
KOG0762|consensus311 99.96
PTZ00168259 mitochondrial carrier protein; Provisional 99.95
KOG0760|consensus302 99.95
KOG0757|consensus319 99.95
KOG0758|consensus297 99.94
KOG0761|consensus361 99.94
KOG0759|consensus286 99.93
KOG0750|consensus304 99.92
KOG0754|consensus294 99.92
KOG0751|consensus694 99.9
KOG0765|consensus333 99.89
KOG0749|consensus298 99.89
KOG0756|consensus299 99.89
KOG0770|consensus353 99.89
KOG0763|consensus301 99.87
KOG0036|consensus463 99.86
KOG0755|consensus320 99.86
KOG1519|consensus297 99.84
KOG0766|consensus297 99.84
KOG0769|consensus308 99.81
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.75
KOG2745|consensus321 99.68
KOG0767|consensus333 99.68
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.62
KOG1519|consensus297 99.36
KOG2954|consensus427 99.27
KOG2745|consensus321 99.13
KOG2954|consensus427 98.63
>KOG0764|consensus Back     alignment and domain information
Probab=100.00  E-value=1.9e-50  Score=340.38  Aligned_cols=241  Identities=26%  Similarity=0.416  Sum_probs=211.2

Q ss_pred             HHHHHHHHHHHHHHhhccchHHHHHHHHhcCC----CCCCcccHHHHHHHHHHhhCcccccccchhhHHHHhHHHHHHHH
Q psy5352           3 ISSLVAGGIAGALAKTTIAPLDRTKINFQISN----SPFSFGDAINFMIKSYKTEGITSLWRGNSATLARIIPHGALQFT   78 (305)
Q Consensus         3 ~~~~~aG~~ag~~~~~v~~Pld~iktr~Q~~~----~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~i~f~   78 (305)
                      |+++++|.++|+++.+++||||++|+|+|++.    ....|+++.+++++|++.||++|||||++|++++..+.+++||.
T Consensus         6 ~~~~iaG~~aG~~stl~vhPlDl~K~R~qa~~g~~~~~~~y~g~~~~~~tI~r~eG~rGLY~Gl~P~v~G~~~sWgiYF~   85 (299)
T KOG0764|consen    6 WEPLIAGLSAGFASTLVVHPLDLVKIRFQASDGRTSLRPAYKGIFGALKTIFRSEGLRGLYRGLSPNVLGSAPSWGLYFF   85 (299)
T ss_pred             hhhhhhhhhhhhhhhhhccchhHhhhhhhhccCccccchhhccHHHHHHHHHHhhhHHHHhccCcHHHHhchhhHHHHHH
Confidence            57889999999999999999999999999982    35679999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCcccchhhHHHHHHhhhhccccchhhhhhccCcccccccchhhHHHHHHHHHHhhhHhhhcccHH
Q psy5352          79 AHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGALAKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITYPLD  158 (305)
Q Consensus        79 ~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~i~~Pld  158 (305)
                      +||.+|.++......                                      ...++..++.+++.||+++.++++|++
T Consensus        86 ~Y~~~K~~~~~~~~~--------------------------------------~~l~~~~~l~sa~~AGa~t~~lTNPIW  127 (299)
T KOG0764|consen   86 FYDFLKSFITEGFNS--------------------------------------GLLSVLANLSSAAEAGAATTILTNPIW  127 (299)
T ss_pred             HHHHHHHHHhcCCCc--------------------------------------ccchHHHHHHHHHhhhHHHHHhcCCeE
Confidence            999999999654330                                      235888999999999999999999999


Q ss_pred             HHHHhhhccchhhhccccccccccccccHHHHHHHHHHhcCcccccccccc-----------------------------
Q psy5352         159 LARARMAVTVKAERRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLS-----------------------------  209 (305)
Q Consensus       159 vvktr~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~g~l~~G~~-----------------------------  209 (305)
                      |+|||++++.....        ...|+++++++++++++||++| ||+|+.                             
T Consensus       128 VvKTRL~~Q~~~~~--------~~~Y~~~f~a~rki~k~EG~rg-LY~GlVP~L~GvshgAiQF~~YE~lK~~~~~~~~~  198 (299)
T KOG0764|consen  128 VVKTRLMLQSKNVQ--------STAYKGMFDALRKIYKEEGFRG-LYKGLVPGLLGVSHGAIQFPAYEELKLRKNRKQGR  198 (299)
T ss_pred             EEeehhhhhccccc--------ccccccHHHHHHHHHHHHhHHH-HHhhhhhHhhhhchhhhhhhhHHHHHHHHHHhcCC
Confidence            99999998854321        1456699999999999999999 999991                             


Q ss_pred             ---------ccc----ccccccc--c-hHHHHHHhhhcCcccccccCcHHHHHHHHHHhcCccccccccchhhhcccccc
Q psy5352         210 ---------MNW----IKGPIAL--T-RTRFVRRRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPIA  273 (305)
Q Consensus       210 ---------~~~----l~~~~a~--t-P~dvvk~r~q~~~~~~~~~~~~~~~~~~i~~~eG~~~~ly~G~~~~~~~~~~~  273 (305)
                               ..+    ++-++|.  + |.+|+|+|||.++. ..+|.++++|++++||+||++ |||||+.++++|.+|.
T Consensus       199 ~~d~~l~n~~~i~~as~SKv~Ast~TYP~qVlRtRLQ~~~~-~~~~~~~~~lIk~t~r~eG~~-GfYkG~~~nLvR~vPA  276 (299)
T KOG0764|consen  199 STDNHLSNLDYIALASLSKVFASTLTYPHQVLRTRLQDQSD-NPRYRGVFDLIKKTWRNEGFR-GFYKGLATNLVRTVPA  276 (299)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHhccc-CcccccHHHHHHHHHHHhchh-hHHHHhHHHHhhcccc
Confidence                     111    2222222  3 99999999999965 678999999999999999999 9999999999999999


Q ss_pred             hhhhHhhHHHHHHHHHHhh
Q psy5352         274 VGISFATYDFIYEALTKFF  292 (305)
Q Consensus       274 ~~~~~~~ye~~~~~l~~~~  292 (305)
                      +.++|.+||.++++|+...
T Consensus       277 ~~ITF~vyEnv~~~L~~~~  295 (299)
T KOG0764|consen  277 ACITFLVYENVKHFLVTHR  295 (299)
T ss_pred             ceeeeehHHHHHHHHhccc
Confidence            9999999999999998765



>KOG0752|consensus Back     alignment and domain information
>KOG0753|consensus Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0754|consensus Back     alignment and domain information
>KOG0760|consensus Back     alignment and domain information
>KOG0758|consensus Back     alignment and domain information
>KOG0757|consensus Back     alignment and domain information
>KOG0759|consensus Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0762|consensus Back     alignment and domain information
>KOG0751|consensus Back     alignment and domain information
>KOG0036|consensus Back     alignment and domain information
>KOG0769|consensus Back     alignment and domain information
>KOG0768|consensus Back     alignment and domain information
>KOG0761|consensus Back     alignment and domain information
>KOG0755|consensus Back     alignment and domain information
>KOG0756|consensus Back     alignment and domain information
>KOG0766|consensus Back     alignment and domain information
>KOG0765|consensus Back     alignment and domain information
>KOG0749|consensus Back     alignment and domain information
>KOG0770|consensus Back     alignment and domain information
>KOG0763|consensus Back     alignment and domain information
>KOG0750|consensus Back     alignment and domain information
>KOG0752|consensus Back     alignment and domain information
>KOG0767|consensus Back     alignment and domain information
>KOG0753|consensus Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0764|consensus Back     alignment and domain information
>KOG0768|consensus Back     alignment and domain information
>KOG0762|consensus Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0760|consensus Back     alignment and domain information
>KOG0757|consensus Back     alignment and domain information
>KOG0758|consensus Back     alignment and domain information
>KOG0761|consensus Back     alignment and domain information
>KOG0759|consensus Back     alignment and domain information
>KOG0750|consensus Back     alignment and domain information
>KOG0754|consensus Back     alignment and domain information
>KOG0751|consensus Back     alignment and domain information
>KOG0765|consensus Back     alignment and domain information
>KOG0749|consensus Back     alignment and domain information
>KOG0756|consensus Back     alignment and domain information
>KOG0770|consensus Back     alignment and domain information
>KOG0763|consensus Back     alignment and domain information
>KOG0036|consensus Back     alignment and domain information
>KOG0755|consensus Back     alignment and domain information
>KOG1519|consensus Back     alignment and domain information
>KOG0766|consensus Back     alignment and domain information
>KOG0769|consensus Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>KOG2745|consensus Back     alignment and domain information
>KOG0767|consensus Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>KOG1519|consensus Back     alignment and domain information
>KOG2954|consensus Back     alignment and domain information
>KOG2745|consensus Back     alignment and domain information
>KOG2954|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
1okc_A297 Structure Of Mitochondrial AdpATP CARRIER IN COMPLE 3e-14
2lck_A303 Structure Of The Mitochondrial Uncoupling Protein 2 1e-05
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH Carboxyatractyloside Length = 297 Back     alignment and structure

Iteration: 1

Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 83/341 (24%), Positives = 137/341 (40%), Gaps = 104/341 (30%) Query: 3 ISSLVAGGIAGALAKTTIAPLDRTKINFQISNS------PFSFGDAINFMIKSYKTEGIT 56 + +AGG+A A++KT +AP++R K+ Q+ ++ + I+ +++ K +G Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 67 Query: 57 SLWRGNSATLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAG 116 S WRGN A + R P AL F +++K+I GG+ Sbjct: 68 SFWRGNLANVIRYFPTQALNFAFKDKYKQIF-----------------------LGGV-- 102 Query: 117 ALAKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITYPLDLARARMAVTVKAERRMQT 176 DR K ++ +G AG TS YPLD AR R+A V Sbjct: 103 ----------DRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADV-------- 144 Query: 177 SSITKKRADTILG-VLRDIYREEGVRQGFFKGLSMNWIKGPIALTRTRF----------- 224 +R T LG + I++ +G+R G ++G +++ ++G I F Sbjct: 145 GKGAAQREFTGLGNCITKIFKSDGLR-GLYQGFNVS-VQGIIIYRAAYFGVYDTAKGMLP 202 Query: 225 ------------------------------VRRRMQTSSITKKRADTI----LGVLRDIY 250 VRRRM S +K AD + + R I Sbjct: 203 DPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQS-GRKGADIMYTGTVDCWRKIA 261 Query: 251 REEGVRQGFFKGLSMNWIKGPIAVGISFATYDFIYEALTKF 291 ++EG + FFKG N ++G +G +F +Y+ + KF Sbjct: 262 KDEGPK-AFFKGAWSNVLRG---MGGAFVL--VLYDEIKKF 296
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2 Determined By Nmr Molecular Fragment Replacement Length = 303 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 1e-63
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 1e-23
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 3e-14
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 4e-14
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 7e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
 Score =  201 bits (514), Expect = 1e-63
 Identities = 71/337 (21%), Positives = 120/337 (35%), Gaps = 96/337 (28%)

Query: 2   VISSLVAGGIAGALAKTTIAPLDRTKINFQISNSPFSFGDA------INFMIKSYKTEGI 55
            +   +AGG+A A++KT +AP++R K+  Q+ ++             I+ +++  K +G 
Sbjct: 7   FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGF 66

Query: 56  TSLWRGNSATLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIA 115
            S WRGN A + R  P  AL F   +++K+I                             
Sbjct: 67  LSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGV------------------------ 102

Query: 116 GALAKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITYPLDLARARMAVTVKAERRMQ 175
                      DR K  ++       +G  AG TS    YPLD AR R+A          
Sbjct: 103 -----------DRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAA--------D 143

Query: 176 TSSITKKRA-DTILGVLRDIYREEGVRQGFFKGLSMN----------------------- 211
                 +R    +   +  I++ +G+R G ++G +++                       
Sbjct: 144 VGKGAAQREFTGLGNCITKIFKSDGLR-GLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP 202

Query: 212 --------------WIKGPIALTRTR---FVRRRMQTSSITKKRA---DTILGVLRDIYR 251
                              +A   +     VRRRM   S  K         +   R I +
Sbjct: 203 DPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAK 262

Query: 252 EEGVRQGFFKGLSMNWIKGPIAVGISFATYDFIYEAL 288
           +EG +  FFKG   N ++G +        YD I + +
Sbjct: 263 DEGPK-AFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297


>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query305
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 100.0
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 100.0
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 99.97
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 99.97
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=1e-47  Score=344.81  Aligned_cols=239  Identities=23%  Similarity=0.370  Sum_probs=207.3

Q ss_pred             HHHHHHHHHHHHHhhccchHHHHHHHHhcCCC---------CCCcccHHHHHHHHHHhhCcccccccchhhHHHHhHHHH
Q psy5352           4 SSLVAGGIAGALAKTTIAPLDRTKINFQISNS---------PFSFGDAINFMIKSYKTEGITSLWRGNSATLARIIPHGA   74 (305)
Q Consensus         4 ~~~~aG~~ag~~~~~v~~Pld~iktr~Q~~~~---------~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~   74 (305)
                      .++++|++||+++.+++||||+||+|+|++..         ...|++.++++++++++||++|||||+.+++++.++..+
T Consensus         3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~   82 (303)
T 2lck_A            3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS   82 (303)
T ss_dssp             CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred             hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999865         246899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCcccchhhHHHHHHhhhhccccchhhhhhccCcccccccchhhHHHHHHHHHHhhhHhhhc
Q psy5352          75 LQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGALAKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSIT  154 (305)
Q Consensus        75 i~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~i~  154 (305)
                      ++|.+||.+|+.+.+...                                        ..+....+++|++||+++.+++
T Consensus        83 i~f~~ye~~k~~~~~~~~----------------------------------------~~~~~~~~~ag~~ag~~~~~~~  122 (303)
T 2lck_A           83 VRIGLYDSVKQFYTKGSE----------------------------------------HAGIGSRLLAGSTTGALAVAVA  122 (303)
T ss_dssp             HTTTHHHHHHHHHSCCCS----------------------------------------SCCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCCc----------------------------------------CCcHHHHHHHHHHHHHHHHHHc
Confidence            999999999998864311                                        1345677899999999999999


Q ss_pred             ccHHHHHHhhhccchhhhccccccccccccccHHHHHHHHHHhcCcccccccccc-------------------------
Q psy5352         155 YPLDLARARMAVTVKAERRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLS-------------------------  209 (305)
Q Consensus       155 ~Pldvvktr~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~g~l~~G~~-------------------------  209 (305)
                      +|+|++|+|+|++....        ....|.+.++++++++++||+++ ||||+.                         
T Consensus       123 ~Pld~vktrlq~~~~~~--------~~~~~~~~~~~~~~i~~~eG~~g-lyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~  193 (303)
T 2lck_A          123 QPTDVVKVRFQAQARAG--------GGRRYQSTVEAYKTIAREEGIRG-LWKGTSPNVARNAIVNCAELVTYDLIKDTLL  193 (303)
T ss_dssp             CHHHHHHHHHHHSCSCC--------CSSSCCCHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CcHHHHHHHHhcccccC--------CCCCCCCHHHHHHHHHHhcChhh-hhCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999975320        11234599999999999999999 999991                         


Q ss_pred             ----------cccccccccc-------chHHHHHHhhhcCcccccccCcHHHHHHHHHHhcCccccccccchhhhccccc
Q psy5352         210 ----------MNWIKGPIAL-------TRTRFVRRRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPI  272 (305)
Q Consensus       210 ----------~~~l~~~~a~-------tP~dvvk~r~q~~~~~~~~~~~~~~~~~~i~~~eG~~~~ly~G~~~~~~~~~~  272 (305)
                                ..++++++++       .|+|+||+|||.+..  ..|.+++||+++|+|+||++ +||||+.|+++|.+|
T Consensus       194 ~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~--~~y~~~~~~~~~i~~~eG~~-glyrG~~~~~~r~~p  270 (303)
T 2lck_A          194 KANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL--GQYHSAGHCALTMLRKEGPR-AFYKGFMPSFLRLGS  270 (303)
T ss_dssp             TTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS--SSCCSHHHHHHHHHHSSCTH-HHHSCCHHHHHHHHH
T ss_pred             hccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc--cccCCHHHHHHHHHHHcChH-HhhccHHHHHHHHHh
Confidence                      2344555555       299999999999853  46899999999999999999 999999999999999


Q ss_pred             chhhhHhhHHHHHHHHHHhhhc
Q psy5352         273 AVGISFATYDFIYEALTKFFLI  294 (305)
Q Consensus       273 ~~~~~~~~ye~~~~~l~~~~~~  294 (305)
                      .++++|.+||.+++.+.+.+..
T Consensus       271 ~~~i~f~~ye~~k~~l~~~~~~  292 (303)
T 2lck_A          271 WNVVMFVTYEQLKRALMAAYQS  292 (303)
T ss_dssp             HHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccC
Confidence            9999999999999988766654



>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 305
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 6e-21
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]
 Score = 88.6 bits (218), Expect = 6e-21
 Identities = 60/289 (20%), Positives = 106/289 (36%), Gaps = 18/289 (6%)

Query: 5   SLVAGGIAGALAKTTIAPLDRTKINFQISNSPFSFGDAINF------MIKSYKTEGITSL 58
             +AGG+A A++KT +AP++R K+  Q+ ++         +      +++  K +G  S 
Sbjct: 9   DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF 68

Query: 59  WRGNSATLARIIPHGALQFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGAL 118
           WRGN A + R  P  AL F   +++K+I               +     +L +GG AGA 
Sbjct: 69  WRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQF----WRYFAGNLASGGAAGAT 124

Query: 119 AKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITYPLDLA--RARMAVTVKAERRMQT 176
           +   + PLD  +        +  A          IT        R        + + +  
Sbjct: 125 SLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIII 184

Query: 177 SSITKKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPIALTRTRFVRRRMQTSSITK 236
                         +    +   +   +    ++  + G +       VRRRM   S  K
Sbjct: 185 YRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAG-LVSYPFDTVRRRMMMQSGRK 243

Query: 237 KRADT---ILGVLRDIYREEGVRQGFFKGLSMNWIKGPIAVGISFATYD 282
                    +   R I ++EG +  FFKG   N ++G +        YD
Sbjct: 244 GADIMYTGTVDCWRKIAKDEGPK-AFFKGAWSNVLRG-MGGAFVLVLYD 290


Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query305
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 100.0
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 99.94
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]
Probab=100.00  E-value=2.2e-43  Score=312.43  Aligned_cols=238  Identities=28%  Similarity=0.511  Sum_probs=199.8

Q ss_pred             hHHHHHHHHHHHHHHhhccchHHHHHHHHhcCCC------CCCcccHHHHHHHHHHhhCcccccccchhhHHHHhHHHHH
Q psy5352           2 VISSLVAGGIAGALAKTTIAPLDRTKINFQISNS------PFSFGDAINFMIKSYKTEGITSLWRGNSATLARIIPHGAL   75 (305)
Q Consensus         2 ~~~~~~aG~~ag~~~~~v~~Pld~iktr~Q~~~~------~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~i   75 (305)
                      +++++++|++||+++.+++||||+||+|+|+++.      ...|++.++++++++++||+++||+|+.+.+++..+..++
T Consensus         6 ~~~~~laG~~a~~i~~~~~~Pld~iK~r~Q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~l~~~~~~~~~   85 (292)
T d1okca_           6 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQAL   85 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhhhhhhhhccchhhhhhhcccch
Confidence            5789999999999999999999999999999754      3458899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCcccchhhHHHHHHhhhhccccchhhhhhccCcccccccchhhHHHHHHHHHHhhhHhhhcc
Q psy5352          76 QFTAHEQWKRILHVDNTVDSSKLLTTFEMVISSLVAGGIAGALAKTTIAPLDRTKINFQNLYNRFLAGSLAGVTSQSITY  155 (305)
Q Consensus        76 ~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~i~~  155 (305)
                      +|.+||.+++.+.......+.                                   ........+.+|.+|++++.++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~a~~~~~~~~~  130 (292)
T d1okca_          86 NFAFKDKYKQIFLGGVDRHKQ-----------------------------------FWRYFAGNLASGGAAGATSLCFVY  130 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCTTTC-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcccccccc-----------------------------------cchhhhhhhhhhhhhhhhHHhhhh
Confidence            999999999998865442211                                   233455678899999999999999


Q ss_pred             cHHHHHHhhhccchhhhccccccccccccccHHHHHHHHHHhcCcccccccccc--------------------------
Q psy5352         156 PLDLARARMAVTVKAERRMQTSSITKKRADTILGVLRDIYREEGVRQGFFKGLS--------------------------  209 (305)
Q Consensus       156 Pldvvktr~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~g~l~~G~~--------------------------  209 (305)
                      |+|++|+|+|++.....       ..+.+.+..+.+++++++||+++ ||+|+.                          
T Consensus       131 P~~~ik~r~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~G~~~-l~~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~  202 (292)
T d1okca_         131 PLDFARTRLAADVGKGA-------AQREFTGLGNCITKIFKSDGLRG-LYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD  202 (292)
T ss_dssp             HHHHHHHHHHHCCCSST-------TTCSCSSHHHHHHHHHHHHCHHH-HTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred             hhhhhheeeeccccccc-------cccccccHHHHHHHhhhccchhh-hhccccccccceehHhhhhhhhccchhhhccc
Confidence            99999999998743221       12234589999999999999999 999991                          


Q ss_pred             -------cccccccccc------c-hHHHHHHhhhcCccc---ccccCcHHHHHHHHHHhcCccccccccchhhhccccc
Q psy5352         210 -------MNWIKGPIAL------T-RTRFVRRRMQTSSIT---KKRADTILGVLRDIYREEGVRQGFFKGLSMNWIKGPI  272 (305)
Q Consensus       210 -------~~~l~~~~a~------t-P~dvvk~r~q~~~~~---~~~~~~~~~~~~~i~~~eG~~~~ly~G~~~~~~~~~~  272 (305)
                             .+++++.+++      + |+||||+|||.+...   ...|.+++||+++++|+||++ +||||+.||++|.+|
T Consensus       203 ~~~~~~~~~~~~~~~~~~~a~~~t~P~dvvktR~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~-~lyrG~~~~~~r~i~  281 (292)
T d1okca_         203 PKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPK-AFFKGAWSNVLRGMG  281 (292)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGG-GGGTTHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHhhccccHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhcCcC-cccccHHHHHHHHHH
Confidence                   2223333332      2 999999999998654   346889999999999999999 999999999999766


Q ss_pred             chhhhHhhHHHH
Q psy5352         273 AVGISFATYDFI  284 (305)
Q Consensus       273 ~~~~~~~~ye~~  284 (305)
                       .+++|.+||.+
T Consensus       282 -~~i~~~~ye~l  292 (292)
T d1okca_         282 -GAFVLVLYDEI  292 (292)
T ss_dssp             -HHHHHHHHHTC
T ss_pred             -HHhhhhHhhcC
Confidence             68999999963



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure