Psyllid ID: psy5386

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
MVQHTYLGRDTDMGSEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRSRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPGPSGLPPVQQVPLTIAKVIGLQNTGCHHFISHPGQA
cccccccccccccccccEEEEcccHHHHHHHHHHHHHccccEEEEEEEcccccEEEccHHHHHcccHHHHHHHHcccccccEEEEccccHHHHHHHHccEEEEEEEEEcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccEEEEccccccccccEEEEEccccHHHHHHHHHHHHHcccEEEEEEEEccccHHHHHHHHHHcccHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHcccEEccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccc
mvqhtylgrdtdmgseHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSlfidhpsrhpiviLKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQdlstrsrtappsqenesssaeppahsTALQQRleasppvielTTIKRrlssederntpsprpqtpspppdcpepsnlslkedrspsppdvddvssmqsgpsdmtlnsripsplsgepvpgpsglppvqqvpLTIAKVIGlqntgchhfishpgqa
mvqhtylgrdtdmGSEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMtqdlstrsrtappsqenesssaeppAHSTALQqrleasppvielttikrrlssederntpsprpqtpspppdcPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPGPSGLPPVQQVPLTIAKVIGLQNTGCHHFISHPGQA
MVQHTYLGRDTDMGSEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRSRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTpsprpqtpspppdcpepsnlsLKEDRspsppdvddvssMQSGPSDMTLNSRIPSPLSGEPVPGPSGLPPVQQVPLTIAKVIGLQNTGCHHFISHPGQA
************MGSEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKV****************************************************************************************************************************************QVPLTIAKVIGLQNTGCHHFI******
******************CLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLA***************************************************************************************************************************************************************
MVQHTYLGRDTDMGSEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMT*******************************QRLEASPPVIELTTIKRRL******************************************************TLNSRIPSPLSGEPVPGPSGLPPVQQVPLTIAKVIGLQNTGCHHFISHPGQA
*VQHTYLGRDTDMGSEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAE**************************************************************************************************************************************************************
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MVQHTYLGRDTDMGSEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRSRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPGPSGLPPVQQVPLTIAKVIGLQNTGCHHFISHPGQA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query287 2.2.26 [Sep-21-2011]
Q9W0K4 1067 Protein bric-a-brac 2 OS= no N/A 0.613 0.164 0.471 2e-41
P42282 813 Protein tramtrack, alpha no N/A 0.418 0.147 0.595 3e-41
P17789 643 Protein tramtrack, beta i no N/A 0.418 0.186 0.595 8e-41
Q9W0K7 977 Protein bric-a-brac 1 OS= no N/A 0.400 0.117 0.577 2e-37
Q9V5M6 963 Longitudinals lacking pro no N/A 0.393 0.117 0.570 5e-35
Q7KQZ4 787 Longitudinals lacking pro no N/A 0.393 0.143 0.570 5e-35
P42283 891 Longitudinals lacking pro no N/A 0.393 0.126 0.570 6e-35
Q867Z4 970 Longitudinals lacking pro no N/A 0.393 0.116 0.570 1e-34
P42284 549 Longitudinals lacking pro no N/A 0.393 0.205 0.570 1e-34
Q9V5M3 878 Longitudinals lacking pro no N/A 0.393 0.128 0.570 2e-34
>sp|Q9W0K4|BAB2_DROME Protein bric-a-brac 2 OS=Drosophila melanogaster GN=bab2 PE=1 SV=2 Back     alignment and function desciption
 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 128/193 (66%), Gaps = 17/193 (8%)

Query: 16  EHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFID 75
           + +CLRWNN+Q+NL  VF +LL  ES VDVTL+C EGHSI+AHK+VLSACS YFQ+LF D
Sbjct: 196 QQFCLRWNNYQSNLTNVFDELLQSESFVDVTLSC-EGHSIKAHKMVLSACSPYFQALFYD 254

Query: 76  HPSRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLS 135
           +P +HPI+I++DV +S+L+ L+EFMY+GE+NV   Q++ LLK AE+LK++GLAE++    
Sbjct: 255 NPCQHPIIIMRDVSWSDLKALVEFMYKGEINVCQDQINPLLKVAETLKIRGLAEVSAGRG 314

Query: 136 TRSRTA-PPSQENESSSAEPPAHSTA-LQQRLEASPP--------------VIELTTIKR 179
               +A P S  ++    E  A +TA LQQ  +A P               V++L   +R
Sbjct: 315 EGGASALPMSAFDDEDEEEELASATAILQQDGDADPDEEMKAKRPRLLPEGVLDLNQRQR 374

Query: 180 RLSSEDERNTPSP 192
           + S +    TPSP
Sbjct: 375 KRSRDGSYATPSP 387
Probably acts as a transcriptional regulator. Required for the specification of the tarsal segment. Also involved in antenna development.
Drosophila melanogaster (taxid: 7227)
>sp|P42282|TTKA_DROME Protein tramtrack, alpha isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=3 Back     alignment and function description
>sp|P17789|TTKB_DROME Protein tramtrack, beta isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=2 Back     alignment and function description
>sp|Q9W0K7|BAB1_DROME Protein bric-a-brac 1 OS=Drosophila melanogaster GN=bab1 PE=2 SV=2 Back     alignment and function description
>sp|Q9V5M6|LOLA5_DROME Longitudinals lacking protein, isoforms J/P/Q/S/Z OS=Drosophila melanogaster GN=lola PE=1 SV=4 Back     alignment and function description
>sp|Q7KQZ4|LOLA3_DROME Longitudinals lacking protein, isoforms A/B/D/L OS=Drosophila melanogaster GN=lola PE=1 SV=1 Back     alignment and function description
>sp|P42283|LOLA1_DROME Longitudinals lacking protein, isoform G OS=Drosophila melanogaster GN=lola PE=1 SV=2 Back     alignment and function description
>sp|Q867Z4|LOLA4_DROME Longitudinals lacking protein, isoforms F/I/K/T OS=Drosophila melanogaster GN=lola PE=1 SV=1 Back     alignment and function description
>sp|P42284|LOLA2_DROME Longitudinals lacking protein, isoforms H/M/V OS=Drosophila melanogaster GN=lola PE=1 SV=2 Back     alignment and function description
>sp|Q9V5M3|LOLA6_DROME Longitudinals lacking protein, isoforms N/O/W/X/Y OS=Drosophila melanogaster GN=lola PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
242012006262 B-cell CLL/lymphoma 6 member B protein, 0.860 0.942 0.561 6e-70
189241597 494 PREDICTED: similar to CG34346 CG34346-PC 0.857 0.497 0.559 1e-69
270000879 459 hypothetical protein TcasGA2_TC011137 [T 0.857 0.535 0.559 1e-69
328701595 637 PREDICTED: oocyte zinc finger protein Xl 0.745 0.335 0.563 7e-62
347964109 1296 AGAP000585-PA [Anopheles gambiae str. PE 0.418 0.092 0.883 4e-58
340728620256 PREDICTED: hypothetical protein LOC10064 0.414 0.464 0.873 1e-57
322793838346 hypothetical protein SINV_03906 [Solenop 0.355 0.294 0.866 2e-57
307211106375 Protein bric-a-brac 2 [Harpegnathos salt 0.414 0.317 0.873 3e-57
380021767370 PREDICTED: uncharacterized protein LOC10 0.358 0.278 0.873 4e-57
357626211 597 hypothetical protein KGM_16406 [Danaus p 0.320 0.154 0.882 1e-56
>gi|242012006|ref|XP_002426734.1| B-cell CLL/lymphoma 6 member B protein, putative [Pediculus humanus corporis] gi|212510905|gb|EEB13996.1| B-cell CLL/lymphoma 6 member B protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  270 bits (690), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 147/262 (56%), Positives = 171/262 (65%), Gaps = 15/262 (5%)

Query: 13  MGSEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSL 72
           MGSEHYCLRWNNHQ+NLLGVFSQLL DESLVDVTLAC+EGHSIRAHKVVLSACSSYFQ+L
Sbjct: 1   MGSEHYCLRWNNHQSNLLGVFSQLLQDESLVDVTLACAEGHSIRAHKVVLSACSSYFQTL 60

Query: 73  FIDHPSRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQ 132
           FIDHP+RHPIVILKDVCF EL+T+++FMY+GEVNVEYCQLS LLKTAESLKVKGL EMT 
Sbjct: 61  FIDHPNRHPIVILKDVCFEELKTIVDFMYKGEVNVEYCQLSALLKTAESLKVKGLTEMTN 120

Query: 133 DLSTRSRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSP 192
             ST S      ++ E  S E    S+           V E  T+ +RL++E   NT SP
Sbjct: 121 LSSTSSTEIIKKEKTEKDSDETETFSSKKNSEEGEITAVTE--TVNKRLTNE---NTKSP 175

Query: 193 RPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQS--GPSDMTLN--------SRIP 242
               P+      E     + E  +       D  +     GP++M+ +        S   
Sbjct: 176 SSCLPANKKLLVEQECEEIAETEANKTDSASDSCAKGGCPGPTEMSASGMALCQMPSSCS 235

Query: 243 SPLSGEPVPGPSGLPPVQQVPL 264
           SP   EP PG S LPPVQQVPL
Sbjct: 236 SPHVSEPFPGTSCLPPVQQVPL 257

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|189241597|ref|XP_971723.2| PREDICTED: similar to CG34346 CG34346-PC [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270000879|gb|EEZ97326.1| hypothetical protein TcasGA2_TC011137 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328701595|ref|XP_001948243.2| PREDICTED: oocyte zinc finger protein XlCOF8.4-like isoform 1 [Acyrthosiphon pisum] gi|328701597|ref|XP_003241654.1| PREDICTED: oocyte zinc finger protein XlCOF8.4-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|347964109|ref|XP_001688288.2| AGAP000585-PA [Anopheles gambiae str. PEST] gi|333466884|gb|EDO64312.2| AGAP000585-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|340728620|ref|XP_003402617.1| PREDICTED: hypothetical protein LOC100647444, partial [Bombus terrestris] Back     alignment and taxonomy information
>gi|322793838|gb|EFZ17178.1| hypothetical protein SINV_03906 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307211106|gb|EFN87337.1| Protein bric-a-brac 2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|380021767|ref|XP_003694728.1| PREDICTED: uncharacterized protein LOC100866459 [Apis florea] Back     alignment and taxonomy information
>gi|357626211|gb|EHJ76380.1| hypothetical protein KGM_16406 [Danaus plexippus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
FB|FBgn0264981 1089 mamo "maternal gene required f 0.463 0.122 0.776 1e-53
FB|FBgn0025525 1067 bab2 "bric a brac 2" [Drosophi 0.581 0.156 0.508 2e-39
FB|FBgn0003870 813 ttk "tramtrack" [Drosophila me 0.494 0.174 0.534 7.1e-37
FB|FBgn0004870 977 bab1 "bric a brac 1" [Drosophi 0.592 0.174 0.453 8.6e-37
FB|FBgn0263108 798 BtbVII "BTB-protein-VII" [Dros 0.418 0.150 0.619 1.7e-35
FB|FBgn0004652 955 fru "fruitless" [Drosophila me 0.442 0.132 0.526 5.7e-32
FB|FBgn0263102 1085 psq "pipsqueak" [Drosophila me 0.463 0.122 0.5 6.6e-32
FB|FBgn0005630 970 lola "longitudinals lacking" [ 0.393 0.116 0.570 7.3e-32
FB|FBgn0000210 880 br "broad" [Drosophila melanog 0.505 0.164 0.466 1.7e-31
FB|FBgn0029824 676 CG3726 [Drosophila melanogaste 0.592 0.251 0.445 3.6e-31
FB|FBgn0264981 mamo "maternal gene required for meiosis" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 529 (191.3 bits), Expect = 1.0e-53, Sum P(3) = 1.0e-53
 Identities = 104/134 (77%), Positives = 116/134 (86%)

Query:    13 MGSEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSL 72
             MGSEHYCLRWNN+Q+NLLGVFSQLL D SLVDVTL CSEG SIRAHKVVLSACSSYFQSL
Sbjct:     1 MGSEHYCLRWNNYQSNLLGVFSQLLQDGSLVDVTLVCSEGTSIRAHKVVLSACSSYFQSL 60

Query:    73 FIDHPSRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMT- 131
             F++HP  H IVILKDV F+EL+TL+EFMY+GEVNV+YCQLS LLKTAESLKVKGLAEMT 
Sbjct:    61 FLEHPEGHLIVILKDVRFAELQTLVEFMYKGEVNVQYCQLSALLKTAESLKVKGLAEMTN 120

Query:   132 QDLSTRSRTAPPSQ 145
             Q+ + R     P +
Sbjct:   121 QNTTLREPEREPDR 134
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005634 "nucleus" evidence=IDA
GO:0035041 "sperm chromatin decondensation" evidence=IMP
GO:0007143 "female meiosis" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0007276 "gamete generation" evidence=IMP
FB|FBgn0025525 bab2 "bric a brac 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0003870 ttk "tramtrack" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0004870 bab1 "bric a brac 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0263108 BtbVII "BTB-protein-VII" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0004652 fru "fruitless" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0263102 psq "pipsqueak" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0005630 lola "longitudinals lacking" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0000210 br "broad" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0029824 CG3726 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
pfam00651101 pfam00651, BTB, BTB/POZ domain 4e-27
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 3e-22
PHA03098 534 PHA03098, PHA03098, kelch-like protein; Provisiona 2e-07
PHA02713 557 PHA02713, PHA02713, hypothetical protein; Provisio 1e-05
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information 
 Score =  101 bits (253), Expect = 4e-27
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 33  FSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSE 92
            ++L  +  L DVTL         AHK VL+ACS YF++LF  +      + L+DV   +
Sbjct: 1   LNELRENGELCDVTLVV-GDKEFHAHKAVLAACSPYFKALFTGNKEVE--ITLEDVSPED 57

Query: 93  LRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQD 133
              L+EF+Y G++ +    +  LL  A+ L++  L +  ++
Sbjct: 58  FEALLEFIYTGKLEITEENVDDLLALADKLQIPALIDKCEE 98

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 287
PHA02713 557 hypothetical protein; Provisional 99.89
KOG4441|consensus 571 99.89
PHA02790 480 Kelch-like protein; Provisional 99.84
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.83
PHA03098 534 kelch-like protein; Provisional 99.78
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.69
KOG4350|consensus 620 99.69
KOG2075|consensus 521 99.54
KOG4591|consensus280 99.37
KOG4682|consensus 488 99.12
KOG0783|consensus 1267 98.85
KOG0783|consensus 1267 98.48
KOG2838|consensus401 98.11
KOG2716|consensus230 97.99
KOG3473|consensus112 97.87
KOG2838|consensus401 97.87
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 97.73
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 97.63
KOG1724|consensus162 97.58
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 97.5
KOG0511|consensus516 97.32
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 97.11
KOG0511|consensus 516 96.9
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 96.67
KOG1987|consensus297 96.13
KOG1665|consensus302 95.49
KOG2714|consensus 465 95.21
KOG2715|consensus210 93.62
KOG3840|consensus438 88.66
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 87.44
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information 
Probab=99.89  E-value=2e-23  Score=209.31  Aligned_cols=138  Identities=22%  Similarity=0.313  Sum_probs=119.5

Q ss_pred             eccccHHHHHHHHHHHHhCCCcccEEEEccC-CeEEEEecccccccCHHHHHhhcCC--CC-CCCEEEeCCCCHHHHHHH
Q psy5386          21 RWNNHQNNLLGVFSQLLHDESLVDVTLACSE-GHSIRAHKVVLSACSSYFQSLFIDH--PS-RHPIVILKDVCFSELRTL   96 (287)
Q Consensus        21 ~~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~-g~~f~aHk~VLaa~S~yFr~mf~~~--e~-~~~~I~L~dv~~~~f~~l   96 (287)
                      ....|...+++.|++||.++.+|||+|+ ++ |+.|+|||+||||+|+||++||.++  +. .+..|.|.++++++|+.|
T Consensus         4 ~~~~h~~~~l~~l~~lr~~~~l~DV~L~-v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~l   82 (557)
T PHA02713          4 DDIKHNRRVVSNISNLLDDDILCDVIIT-IGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNI   82 (557)
T ss_pred             chhhhhHHHHHHHHHHHhCCCCCCEEEE-eCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHH
Confidence            4568999999999999999999999998 55 8999999999999999999999986  33 367899999999999999


Q ss_pred             HHHhhcCccccchhhHHHHHHHHhhcCchhHHHHHHHHHhccCCCCC-----------------------CccccccCCC
Q psy5386          97 IEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRSRTAPP-----------------------SQENESSSAE  153 (287)
Q Consensus        97 L~fiYTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~~~~~~-----------------------~~~~~~~v~~  153 (287)
                      |+|+|||+  ++.+++++||.+|++||++.|++.|++||.......+                       ++++|.++.+
T Consensus        83 l~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~  160 (557)
T PHA02713         83 VQYLYNRH--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLIT  160 (557)
T ss_pred             HHHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhC
Confidence            99999997  6889999999999999999999999999987654332                       2256777777


Q ss_pred             CcccchHH
Q psy5386         154 PPAHSTAL  161 (287)
Q Consensus       154 ~~~~~~~~  161 (287)
                      .++|..+.
T Consensus       161 ~~ef~~L~  168 (557)
T PHA02713        161 TDAFKKTV  168 (557)
T ss_pred             ChhhhhCC
Confidence            77765433

>KOG4441|consensus Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4350|consensus Back     alignment and domain information
>KOG2075|consensus Back     alignment and domain information
>KOG4591|consensus Back     alignment and domain information
>KOG4682|consensus Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>KOG2838|consensus Back     alignment and domain information
>KOG2716|consensus Back     alignment and domain information
>KOG3473|consensus Back     alignment and domain information
>KOG2838|consensus Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG1724|consensus Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG0511|consensus Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0511|consensus Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>KOG1987|consensus Back     alignment and domain information
>KOG1665|consensus Back     alignment and domain information
>KOG2714|consensus Back     alignment and domain information
>KOG2715|consensus Back     alignment and domain information
>KOG3840|consensus Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
3e4u_A130 Crystal Structure Of The Wild-Type Human Bcl6 BtbPO 2e-06
1r28_A127 Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) B 2e-06
2z8h_A138 Structure Of Mouse Bach1 Btb Domain Length = 138 1e-04
2nn2_A133 Crystal Structure Of The Btb Domain From The LrfZBT 2e-04
2q81_A119 Crystal Structure Of The Miz-1 BtbPOZ DOMAIN Length 3e-04
3ga1_A129 Crystal Structure Of The Human Nac1 Poz Domain Leng 3e-04
2ihc_A124 Crystal Structure Of The Bric-A-Brac (Btb) Domain O 4e-04
3m52_A117 Crystal Structure Of The Btb Domain From The Miz-1Z 4e-04
3ohu_A125 Crystal Structure Of The Human Bach2 Poz Domain, Fo 5e-04
2if5_A120 Structure Of The Poz Domain Of Human Lrf, A Master 9e-04
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ DOMAIN Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 13  MGSEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSL 72
           +GS   C+++  H +++L   ++L   + L DV +  S     RAHK VL ACS  F S+
Sbjct: 3   LGSADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSR-EQFRAHKTVLMACSGLFYSI 61
Query: 73  FIDHPSRHPIVILKD-------VCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVK 125
           F D    +  VI  D        C      L++FMY   +N+    +  ++ TA  L+++
Sbjct: 62  FTDQLKCNLSVINLDPEINPEGFC-----ILLDFMYTSRLNLREGNIMAVMATAMYLQME 116
Query: 126 GLAE 129
            + +
Sbjct: 117 HVVD 120
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb Domain To 2.2 Angstrom Length = 127 Back     alignment and structure
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain Length = 138 Back     alignment and structure
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7 Transcriptional Regulator Length = 133 Back     alignment and structure
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN Length = 119 Back     alignment and structure
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain Length = 129 Back     alignment and structure
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human Bach1 Length = 124 Back     alignment and structure
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17 Transcription Regulator Length = 117 Back     alignment and structure
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I Length = 125 Back     alignment and structure
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master Regulator Of Oncogenesis Length = 120 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 1e-25
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 5e-25
2vpk_A116 Myoneurin; transcription regulation, transcription 2e-24
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 8e-24
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 2e-23
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 2e-23
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 4e-23
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 7e-23
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 4e-22
3b84_A119 Zinc finger and BTB domain-containing protein 48; 6e-22
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 1e-21
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 1e-21
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 2e-21
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 7e-21
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 1e-18
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 7e-18
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 2e-17
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 4e-17
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 5e-17
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 1e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
 Score = 97.3 bits (243), Expect = 1e-25
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 12  DMGSEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQS 71
            +GS  Y      H  N+L   +     + L DVTL   E    RAH+ VL+ACS YF  
Sbjct: 2   PLGSPMYVYESTVHCTNILLGLNDQRKKDILCDVTL-IVERKEFRAHRAVLAACSEYFWQ 60

Query: 72  LFIDHPSRHP-IVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEM 130
             +        + + ++V       L++F Y  ++ +    +  +++ AE L++  L + 
Sbjct: 61  ALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDS 120
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.95
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.95
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.95
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.95
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.95
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.94
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.94
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.94
2vpk_A116 Myoneurin; transcription regulation, transcription 99.94
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.94
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.94
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.94
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.93
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.91
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.91
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.9
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.9
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.9
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.89
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.85
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.56
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.4
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.38
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 99.21
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.87
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.81
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.81
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 98.41
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 98.4
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 97.56
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 95.78
3kvt_A115 Potassium channel protein SHAW; tetramerization do 95.66
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 95.15
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 94.45
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 93.95
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 87.78
2r9r_B 514 Paddle chimera voltage gated potassium channel KV; 82.02
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
Probab=99.95  E-value=5.5e-28  Score=198.80  Aligned_cols=126  Identities=26%  Similarity=0.389  Sum_probs=118.4

Q ss_pred             CcceeeeccccHHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCCCCCCCEEEeC-CCCHHHH
Q psy5386          15 SEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILK-DVCFSEL   93 (287)
Q Consensus        15 ~e~~~l~~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~I~L~-dv~~~~f   93 (287)
                      .+.+.+.++.|+..+++.|+++|+++.+|||+|+ ++|+.|+|||+||+++|+||++||.++......|.++ ++++++|
T Consensus         9 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~-v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~~~~~   87 (138)
T 2z8h_A            9 SAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVL-VEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGF   87 (138)
T ss_dssp             TCCCCCCCSSHHHHHHHHHHHHHHHTCSCCEEEE-ETTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSCHHHH
T ss_pred             CCeeEecCCchHHHHHHHHHHHHhhCCCcCeEEE-ECCEEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCCHHHH
Confidence            4678899999999999999999999999999998 7999999999999999999999999876666789995 8999999


Q ss_pred             HHHHHHhhcCccccchhhHHHHHHHHhhcCchhHHHHHHHHHhccCCC
Q psy5386          94 RTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRSRTA  141 (287)
Q Consensus        94 ~~lL~fiYTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~~~~  141 (287)
                      +.+|+|||||++.++.+++.+|+.+|++|+|+.|++.|++||......
T Consensus        88 ~~lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~  135 (138)
T 2z8h_A           88 EPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLD  135 (138)
T ss_dssp             HHHHHHHHHSCCCCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSC
T ss_pred             HHHHHHhcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999999999999999999876554
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 287
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 4e-23
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 3e-22
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.4 bits (221), Expect = 4e-23
 Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 3/116 (2%)

Query: 20  LRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSR 79
           +++  H +++L   ++L   + L DV +        RAHK VL ACS  F S+F D   R
Sbjct: 3   IQFTRHASDVLLNLNRLRSRDILTDVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKR 61

Query: 80  H--PIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQD 133
           +   I +  ++       L++FMY   +N+    +  ++ TA  L+++ + +  + 
Sbjct: 62  NLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRK 117
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.95
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.95
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 98.27
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 98.25
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 97.07
d3kvta_103 akv3.1 voltage-gated potassium channel {California 96.86
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 96.85
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 96.37
d1t1da_100 Shaker potassium channel {California sea hare (Apl 95.95
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 90.78
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 88.77
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.5e-29  Score=198.86  Aligned_cols=118  Identities=23%  Similarity=0.313  Sum_probs=111.8

Q ss_pred             cceeeeccccHHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCCCCCCCEEEeCCCCHHHHHH
Q psy5386          16 EHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSELRT   95 (287)
Q Consensus        16 e~~~l~~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~I~L~dv~~~~f~~   95 (287)
                      +.+++++++|++.+++.|+++|++|.+|||+|. ++|++|+|||+|||++|+||++||.++   ..+|.++++++++|+.
T Consensus         2 ~~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~-v~~~~~~aHk~vLaa~S~~F~~lf~~~---~~~i~~~~v~~~~f~~   77 (121)
T d1buoa_           2 GMIQLQNPSHPTGLLCKANQMRLAGTLCDVVIM-VDSQEFHAHRTVLACTSKMFEILFHRN---SQHYTLDFLSPKTFQQ   77 (121)
T ss_dssp             CCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEE-ESSCEEEECHHHHHHHCHHHHHHTTSC---CSEEEECSSCHHHHHH
T ss_pred             CeEEEcCCchHHHHHHHHHHHHhcCCcEeEEEE-ECCEEEEEEHHHhcccChhhhhhccCc---cceeecCCCCHHHHHH
Confidence            367889999999999999999999999999998 799999999999999999999999764   4689999999999999


Q ss_pred             HHHHhhcCccccchhhHHHHHHHHhhcCchhHHHHHHHHHhc
Q psy5386          96 LIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTR  137 (287)
Q Consensus        96 lL~fiYTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~  137 (287)
                      +|+|+|||++.++.+++.+++.+|++|+|+.|++.|.+||++
T Consensus        78 ll~~~Ytg~i~l~~~~v~~ll~~A~~l~~~~L~~~C~~~L~~  119 (121)
T d1buoa_          78 ILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET  119 (121)
T ss_dssp             HHHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHheEccccCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999963
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure