Psyllid ID: psy539

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70
Protein Sequence
MSQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL
Secondary Structure (PSIPRED)
cccccccccccEEEEccccccccccccccccEEEEEEEEccccccccHHHHHHHHcEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccEEEccccEEEEEcccccccccccEEEEEEEEEEEEccccccccHHHHHHHHHHHHHEHHHHHHHcc
Coil and Loop (DISEMBL)
msqstyidnvnsmtlardhhpgiadgsevhHEVEMGIIISQRCKKVNRYDALNCIAGYCLALdltevrhl
Flexible Loop (DISEMBL)
MSQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLaldltevrhl
Low Complexity Region (SEG)
MSQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL
Disordered region (IsUnstruct)
**************************SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTE****
Disordered Region (DISOPRED)
**QSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL
Disordered Region (DISEMBL)
MSQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL
Disordered Region (DISPRO)
****TYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRH*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	70	2.2.26 [Sep-21-2011]
Q86I22	218	Acylpyruvase FAHD1, mitoc	yes	N/A	0.585	0.188	0.414	3e-05
P34673	214	Uncharacterized protein Z	yes	N/A	0.857	0.280	0.316	5e-05
Q2HJ98	221	Acylpyruvase FAHD1, mitoc	yes	N/A	0.528	0.167	0.405	0.0002
Q6P587	224	Acylpyruvase FAHD1, mitoc	yes	N/A	0.528	0.165	0.405	0.0003
Q5RDW0	224	Acylpyruvase FAHD1, mitoc	yes	N/A	0.528	0.165	0.405	0.0003

>sp|Q86I22|FAHD1_DICDI Acylpyruvase FAHD1, mitochondrial OS=Dictyostelium discoideum GN=fahd1 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 32/41 (78%)

Query: 25 DGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
          + S++HHEVE+GI+I ++ + ++   A++ ++GY LALD+T
Sbjct: 56 ESSDIHHEVELGIVIGKKGRDIDLKSAMDYVSGYTLALDMT 96

Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.
Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 7EC: .EC: 1EC: .EC: 5

>sp|P34673|YO23_CAEEL Uncharacterized protein ZK688.3 OS=Caenorhabditis elegans GN=ZK688.3 PE=3 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 37/60 (61%)

Query: 6  YIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
          ++  VNS  +  +          +H EVE+G++IS++  ++++ DA++ I GY +ALD+T
Sbjct: 39 FVKTVNSFIVEGEPIVAPPGCQNLHQEVELGVVISKKASRISKSDAMDYIGGYTVALDMT 98

Caenorhabditis elegans (taxid: 6239)

>sp|Q2HJ98|FAHD1_BOVIN Acylpyruvase FAHD1, mitochondrial OS=Bos taurus GN=FAHD1 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 28/37 (75%)

Query: 29  VHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
           +HHE+E+ +++ +RC+ V+   A++ +AGY L LD+T
Sbjct: 65  LHHELELAVVMGKRCRAVSEAAAMDYVAGYALCLDMT 101

Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

>sp|Q6P587|FAHD1_HUMAN Acylpyruvase FAHD1, mitochondrial OS=Homo sapiens GN=FAHD1 PE=1 SV=2

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 27/37 (72%)

Query: 29  VHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
           +HHE+E+G+++ +RC+ V    A++ + GY L LD+T
Sbjct: 68  LHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMT 104

Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

>sp|Q5RDW0|FAHD1_PONAB Acylpyruvase FAHD1, mitochondrial OS=Pongo abelii GN=FAHD1 PE=2 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 27/37 (72%)

Query: 29  VHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
           +HHE+E+G+++ +RC+ V    A++ + GY L LD+T
Sbjct: 68  LHHELELGVVMGRRCRAVPEAAAMDYVGGYALCLDMT 104

Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
195569255	220	GD19399 [Drosophila simulans] gi|1941985	0.557	0.177	0.538	1e-05
195355570	220	GM15067 [Drosophila sechellia] gi|194129	0.557	0.177	0.538	1e-05
194744889	221	GF16499 [Drosophila ananassae] gi|190627	0.628	0.199	0.522	2e-05
195482984	220	GE11223 [Drosophila yakuba] gi|194186621	0.557	0.177	0.538	2e-05
195498410	220	GE25709 [Drosophila yakuba] gi|194182612	0.557	0.177	0.538	2e-05
18447150	228	AT31109p [Drosophila melanogaster]	0.557	0.171	0.538	2e-05
386766193	220	CG5793, isoform B [Drosophila melanogast	0.557	0.177	0.538	2e-05
194899572	220	GG24388 [Drosophila erecta] gi|190651036	0.557	0.177	0.538	2e-05
108743651	236	IP02096p [Drosophila melanogaster]	0.557	0.165	0.538	2e-05
195055211	221	GH17291 [Drosophila grimshawi] gi|193892	0.557	0.176	0.564	2e-05

>gi|195569255|ref|XP_002102626.1| GD19399 [Drosophila simulans] gi|194198553|gb|EDX12129.1| GD19399 [Drosophila simulans]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/39 (53%), Positives = 33/39 (84%)

Query: 27  SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
           ++V +EVE+G++I + CK V++ DA++ +AGYCLALDLT
Sbjct: 64  TKVAYEVELGVVIGKNCKNVSKADAMSYVAGYCLALDLT 102

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195355570|ref|XP_002044264.1| GM15067 [Drosophila sechellia] gi|194129565|gb|EDW51608.1| GM15067 [Drosophila sechellia]

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/39 (53%), Positives = 33/39 (84%)

Query: 27  SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
           ++V +EVE+G++I + CK V++ DA++ +AGYCLALDLT
Sbjct: 64  TKVAYEVELGVVIGKTCKNVSKADAMSYVAGYCLALDLT 102

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194744889|ref|XP_001954925.1| GF16499 [Drosophila ananassae] gi|190627962|gb|EDV43486.1| GF16499 [Drosophila ananassae]

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 34/44 (77%)

Query: 27  SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70
           S+V +EVE+G++I + CK V++  A++ +AGYCLALDLT   HL
Sbjct: 65  SKVAYEVELGVVIGKPCKNVSKARAMDYVAGYCLALDLTAQCHL 108

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195482984|ref|XP_002086831.1| GE11223 [Drosophila yakuba] gi|194186621|gb|EDX00233.1| GE11223 [Drosophila yakuba]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/39 (53%), Positives = 33/39 (84%)

Query: 27  SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
           ++V +EVE+G++I + CK V++ DA++ +AGYCLALDLT
Sbjct: 64  TKVAYEVELGVVIGKPCKNVSKTDAMSYVAGYCLALDLT 102

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195498410|ref|XP_002096511.1| GE25709 [Drosophila yakuba] gi|194182612|gb|EDW96223.1| GE25709 [Drosophila yakuba]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/39 (53%), Positives = 33/39 (84%)

Query: 27  SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
           ++V +EVE+G++I + CK V++ DA++ +AGYCLALDLT
Sbjct: 64  TKVAYEVELGVVIGKPCKNVSKTDAMSYVAGYCLALDLT 102

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|18447150|gb|AAL68166.1| AT31109p [Drosophila melanogaster]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/39 (53%), Positives = 33/39 (84%)

Query: 27  SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
           ++V +EVE+G++I + CK V++ DA++ +AGYCLALDLT
Sbjct: 72  TKVAYEVELGVVIGKPCKNVSKADAMSYVAGYCLALDLT 110

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386766193|ref|NP_001247226.1| CG5793, isoform B [Drosophila melanogaster] gi|442620262|ref|NP_650944.3| CG5793, isoform D [Drosophila melanogaster] gi|442620263|ref|NP_001247225.2| CG5793, isoform E [Drosophila melanogaster] gi|383292852|gb|AFH06544.1| CG5793, isoform B [Drosophila melanogaster] gi|440217707|gb|AAF55854.3| CG5793, isoform D [Drosophila melanogaster] gi|440217708|gb|AFH06543.2| CG5793, isoform E [Drosophila melanogaster]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/39 (53%), Positives = 33/39 (84%)

Query: 27  SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
           ++V +EVE+G++I + CK V++ DA++ +AGYCLALDLT
Sbjct: 64  TKVAYEVELGVVIGKPCKNVSKADAMSYVAGYCLALDLT 102

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194899572|ref|XP_001979333.1| GG24388 [Drosophila erecta] gi|190651036|gb|EDV48291.1| GG24388 [Drosophila erecta]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/39 (53%), Positives = 33/39 (84%)

Query: 27  SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
           ++V +EVE+G++I + CK V++ DA++ +AGYCLALDLT
Sbjct: 64  TKVAYEVELGVVIGKPCKNVSKADAMSYVAGYCLALDLT 102

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|108743651|gb|ABG02134.1| IP02096p [Drosophila melanogaster]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/39 (53%), Positives = 33/39 (84%)

Query: 27  SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
           ++V +EVE+G++I + CK V++ DA++ +AGYCLALDLT
Sbjct: 80  TKVAYEVELGVVIGKPCKNVSKADAMSYVAGYCLALDLT 118

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195055211|ref|XP_001994513.1| GH17291 [Drosophila grimshawi] gi|193892276|gb|EDV91142.1| GH17291 [Drosophila grimshawi]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 30/39 (76%)

Query: 27  SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
           ++V +EVE+G+II  RCK V+R  A+  + GYCLALDLT
Sbjct: 65  TKVAYEVELGVIIGSRCKNVSREQAMQHVGGYCLALDLT 103

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
FB|FBgn0038858	228	CG5793 [Drosophila melanogaste	0.557	0.171	0.538	1.2e-07
WB|WBGene00022798	214	fahd-1 [Caenorhabditis elegans	0.828	0.271	0.354	4.1e-06
DICTYBASE|DDB_G0275071	218	fahd1 "Fumarylacetoacetate (FA	0.585	0.188	0.414	7.3e-06
TAIR|locus:2089373	224	AT3G16700 [Arabidopsis thalian	0.785	0.245	0.387	1.3e-05
UNIPROTKB|F1NXZ7	183	FAHD1 "Uncharacterized protein	0.557	0.213	0.435	1.5e-05
UNIPROTKB|Q2HJ98	221	FAHD1 "Acylpyruvase FAHD1, mit	0.528	0.167	0.405	4.8e-05
UNIPROTKB|Q6P587	224	FAHD1 "Acylpyruvase FAHD1, mit	0.528	0.165	0.405	6.4e-05
UNIPROTKB|Q5RDW0	224	FAHD1 "Acylpyruvase FAHD1, mit	0.528	0.165	0.405	6.4e-05
TAIR|locus:2129815	222	AT4G15940 [Arabidopsis thalian	0.785	0.247	0.354	0.0001
RGD|1304560	221	Fahd1 "fumarylacetoacetate hyd	0.528	0.167	0.432	0.00029

FB|FBgn0038858 CG5793 [Drosophila melanogaster (taxid:7227)]

 Score = 123 (48.4 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 21/39 (53%), Positives = 33/39 (84%)

Query:    27 SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
             ++V +EVE+G++I + CK V++ DA++ +AGYCLALDLT
Sbjct:    72 TKVAYEVELGVVIGKPCKNVSKADAMSYVAGYCLALDLT 110

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

WB|WBGene00022798 fahd-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 109 (43.4 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 22/62 (35%), Positives = 42/62 (67%)

Query:     6 YIDNVNSMTLARDHHPGIAD-GSE-VHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALD 63
             ++  VNS  +  +  P +A  G + +H EVE+G++IS++  ++++ DA++ I GY +ALD
Sbjct:    39 FVKTVNSFIV--EGEPIVAPPGCQNLHQEVELGVVISKKASRISKSDAMDYIGGYTVALD 96

Query:    64 LT 65
             +T
Sbjct:    97 MT 98

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

DICTYBASE|DDB_G0275071 fahd1 "Fumarylacetoacetate (FAA) hydrolase domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 107 (42.7 bits), Expect = 7.3e-06, P = 7.3e-06
 Identities = 17/41 (41%), Positives = 32/41 (78%)

Query:    25 DGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
             + S++HHEVE+GI+I ++ + ++   A++ ++GY LALD+T
Sbjct:    56 ESSDIHHEVELGIVIGKKGRDIDLKSAMDYVSGYTLALDMT 96

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0047621 "acylpyruvate hydrolase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0034545 "fumarylpyruvate hydrolase activity" evidence=ISS

GO:0018773 "acetylpyruvate hydrolase activity" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2089373 AT3G16700 [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query:     4 STYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALD 63
             S+Y++N  ++ +    HP   D   +HHEVE+ ++I Q+ + V    A+N I GY LALD
Sbjct:    46 SSYLENGGTIEIP---HP--LDS--LHHEVELAVVIGQKARDVPERLAMNYIGGYALALD 98

Query:    64 LT 65
             +T
Sbjct:    99 MT 100

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0005507 "copper ion binding" evidence=IDA

UNIPROTKB|F1NXZ7 FAHD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 102 (41.0 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 17/39 (43%), Positives = 29/39 (74%)

Query:    27 SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
             S++HHEVE+G++I +R + V++  A+  + GY L LD+T
Sbjct:    24 SDLHHEVELGVVIGKRTQAVSQEAAMEHVGGYALCLDMT 62

GO:0003824 "catalytic activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|Q2HJ98 FAHD1 "Acylpyruvase FAHD1, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 100 (40.3 bits), Expect = 4.8e-05, P = 4.8e-05
 Identities = 15/37 (40%), Positives = 28/37 (75%)

Query:    29 VHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
             +HHE+E+ +++ +RC+ V+   A++ +AGY L LD+T
Sbjct:    65 LHHELELAVVMGKRCRAVSEAAAMDYVAGYALCLDMT 101

GO:0018773 "acetylpyruvate hydrolase activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0034545 "fumarylpyruvate hydrolase activity" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0047621 "acylpyruvate hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q6P587 FAHD1 "Acylpyruvase FAHD1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 99 (39.9 bits), Expect = 6.4e-05, P = 6.4e-05
 Identities = 15/37 (40%), Positives = 27/37 (72%)

Query:    29 VHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
             +HHE+E+G+++ +RC+ V    A++ + GY L LD+T
Sbjct:    68 LHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMT 104

GO:0046872 "metal ion binding" evidence=IEA

GO:0047621 "acylpyruvate hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0034545 "fumarylpyruvate hydrolase activity" evidence=IDA

GO:0018773 "acetylpyruvate hydrolase activity" evidence=IDA

UNIPROTKB|Q5RDW0 FAHD1 "Acylpyruvase FAHD1, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 99 (39.9 bits), Expect = 6.4e-05, P = 6.4e-05
 Identities = 15/37 (40%), Positives = 27/37 (72%)

Query:    29 VHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
             +HHE+E+G+++ +RC+ V    A++ + GY L LD+T
Sbjct:    68 LHHELELGVVMGRRCRAVPEAAAMDYVGGYALCLDMT 104

GO:0005739 "mitochondrion" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0018773 "acetylpyruvate hydrolase activity" evidence=ISS

GO:0034545 "fumarylpyruvate hydrolase activity" evidence=ISS

TAIR|locus:2129815 AT4G15940 [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00010, P = 0.00010
 Identities = 22/62 (35%), Positives = 38/62 (61%)

Query:     4 STYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALD 63
             S+Y++N  ++ +    HP   D   +HHEVE+ ++I Q+ + V    A++ I GY +ALD
Sbjct:    46 SSYLENGGTIEIP---HP--LDS--LHHEVELALVIGQKARDVPESIAMDYIGGYAVALD 98

Query:    64 LT 65
             +T
Sbjct:    99 MT 100

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0005507 "copper ion binding" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

RGD|1304560 Fahd1 "fumarylacetoacetate hydrolase domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 93 (37.8 bits), Expect = 0.00029, P = 0.00029
 Identities = 16/37 (43%), Positives = 27/37 (72%)

Query:    29 VHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
             +HHEVE+G+++ +R + V    A++ +AGY L LD+T
Sbjct:    65 LHHEVELGVLLGRRGEAVPEAAAMDYVAGYALCLDMT 101

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;ISS

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0018773 "acetylpyruvate hydrolase activity" evidence=ISO;ISS

GO:0034545 "fumarylpyruvate hydrolase activity" evidence=ISO;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0047621 "acylpyruvate hydrolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	70
COG0179	266	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxo	4e-12
pfam01557	207	pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA	2e-10
PRK10691	219	PRK10691, PRK10691, hypothetical protein; Provisio	2e-06
TIGR02303	245	TIGR02303, HpaG-C-term, 4-hydroxyphenylacetate deg	9e-05

>gnl|CDD|223257 COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 58.5 bits (142), Expect = 4e-12
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 23  IADGSE-VHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70
           +  GS+ + +E E+ ++I +R K V+  DAL+ IAGY +  D+T  R L
Sbjct: 105 LPPGSKGLDYEGELAVVIGKRGKDVSVEDALDYIAGYTIGNDVTA-RDL 152

Length = 266

>gnl|CDD|216570 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase family

 Score = 53.5 bits (129), Expect = 2e-10
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 24 ADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
               + +E E+ ++I +  + V   +AL+ +AGY LA D++
Sbjct: 49 RGSERLDYEAELAVVIGKDLRAVTPEEALDYVAGYTLANDVS 90

This family consists of fumarylacetoacetate (FAA) hydrolase, or fumarylacetoacetate hydrolase (FAH) and it also includes HHDD isomerase/OPET decarboxylase from E. coli strain W. FAA is the last enzyme in the tyrosine catabolic pathway, it hydrolyses fumarylacetoacetate into fumarate and acetoacetate which then join the citric acid cycle. Mutations in FAA cause type I tyrosinemia in humans this is an inherited disorder mainly affecting the liver leading to liver cirrhosis, hepatocellular carcinoma, renal tubular damages and neurologic crises amongst other symptoms. The enzymatic defect causes the toxic accumulation of phenylalanine/tyrosine catabolites. The E. coli W enzyme HHDD isomerase/OPET decarboxylase contains two copies of this domain and functions in fourth and fifth steps of the homoprotocatechuate pathway; here it decarboxylates OPET to HHDD and isomerises this to OHED. The final products of this pathway are pyruvic acid and succinic semialdehyde. This family also includes various hydratases and 4-oxalocrotonate decarboxylases which are involved in the bacterial meta-cleavage pathways for degradation of aromatic compounds. 2-hydroxypentadienoic acid hydratase, encoded by mhpD in E. coli, is involved in the phenylpropionic acid pathway of E. coli and catalyzes the conversion of 2-hydroxy pentadienoate to 4-hydroxy-2-keto-pentanoate and uses a Mn2+ co-factor. OHED hydratase encoded by hpcG in E. coli is involved in the homoprotocatechuic acid (HPC) catabolism. XylI in P. putida is a 4-Oxalocrotonate decarboxylase. Length = 207

>gnl|CDD|182650 PRK10691, PRK10691, hypothetical protein; Provisional

 Score = 42.8 bits (101), Expect = 2e-06
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 28  EVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
            VHHEVE+ ++I    ++         IAGY +ALDLT
Sbjct: 66  SVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDLT 103

Length = 219

>gnl|CDD|131356 TIGR02303, HpaG-C-term, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit

 Score = 37.9 bits (88), Expect = 9e-05
 Identities = 12/36 (33%), Positives = 23/36 (63%)

Query: 29  VHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDL 64
           +H+E E+ +++ +  K V R DA++ + GY +A D 
Sbjct: 93  MHYECELAVVVGKTAKNVKREDAMDYVLGYTIANDY 128

This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED). Length = 245

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	70
COG0179	266	MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-en	99.95
TIGR02303	245	HpaG-C-term 4-hydroxyphenylacetate degradation bif	99.95
PRK10691	219	hypothetical protein; Provisional	99.92
PRK15203	429	4-hydroxyphenylacetate degradation bifunctional is	99.92
KOG1535|consensus	217		99.91
PLN02856	424	fumarylacetoacetase	99.91
TIGR01266	415	fum_ac_acetase fumarylacetoacetase. This enzyme ca	99.91
PRK15203	429	4-hydroxyphenylacetate degradation bifunctional is	99.9
PRK12764	500	hypothetical protein; Provisional	99.87
TIGR02305	205	HpaG-N-term 4-hydroxyphenylacetate degradation bif	99.84
PF01557	218	FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase	99.8
KOG2843|consensus	420		99.47
TIGR03220	255	catechol_dmpE 2-oxopent-4-enoate hydratase. Member	98.63
COG3970	379	Fumarylacetoacetate (FAA) hydrolase family protein	98.38
TIGR02312	267	HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. T	97.73
PRK11342	262	mhpD 2-keto-4-pentenoate hydratase; Provisional	97.46
COG3802	333	GguC Uncharacterized protein conserved in bacteria	96.03
COG3971	264	2-keto-4-pentenoate hydratase [Secondary metabolit	95.26
TIGR03218	263	catechol_dmpH 4-oxalocrotonate decarboxylase. Memb	94.25

>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.95  E-value=1.7e-28  Score=168.89  Aligned_cols=70  Identities=24%  Similarity=0.303  Sum_probs=68.4

Q ss_pred             CCceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            1 MSQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         1 ~~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      +.|.+|+||++++++++++|.+|+.++++|||+||||||||+++++++++|++||+|||++||+|+||+|
T Consensus        84 ~~P~~F~K~~~a~~~~~~~i~~P~~s~~~dyE~ELavvIGk~~~~v~~e~A~d~I~GYti~nD~T~Rd~Q  153 (266)
T COG0179          84 EEPVFFLKPPTAVIGPNDPIPLPPGSKGLDYEGELAVVIGKRGKDVSVEDALDYIAGYTIGNDVTARDLQ  153 (266)
T ss_pred             CCCeeeccCcccccCCCCceECCCCCCCcceeEEEEEEECCcCCCCCHHHHHhhheEEeeeeecchhcch
Confidence            4688999999999999999999999999999999999999999999999999999999999999999998

>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit

Probab=99.95  E-value=7.4e-28  Score=163.65  Aligned_cols=69  Identities=23%  Similarity=0.339  Sum_probs=67.2

Q ss_pred             CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      .|.+|+||++++++++++|.+|+.+..+|||+||++||||.++++++++|++||+|||++||+|+||+|
T Consensus        66 ~P~~F~Kp~~s~~g~~~~i~~P~~~~~ld~E~EL~vvigk~~~~v~~~~A~~~I~Gytv~nD~T~Rd~q  134 (245)
T TIGR02303        66 EPLVFLKGNNTLTGHKGVTYRPKDVRFMHYECELAVVVGKTAKNVKREDAMDYVLGYTIANDYAIRDYL  134 (245)
T ss_pred             CCEEEEcCcceeeCCCCcEECCCCCCceeEEEEEEEEECCCCCCCCHHHHhhheeEEEEEeecchHHHH
Confidence            488999999999999999999999999999999999999999999999999999999999999999987

This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).

>PRK10691 hypothetical protein; Provisional

Probab=99.92  E-value=3.3e-25  Score=148.49  Aligned_cols=69  Identities=28%  Similarity=0.330  Sum_probs=66.9

Q ss_pred             CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      .|.+|+||++++++++++|.+|+.+.++|||+||++||||.++++++++|++||+||+++||+|+||+|
T Consensus        40 ~P~~F~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvigk~~~~v~~~~a~~~V~gyt~~nDvt~r~~q  108 (219)
T PRK10691         40 EPVLFIKPETALCDLRQPLAIPKDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDLTLRDLQ  108 (219)
T ss_pred             CCEEEECCcceeeCCCCcEECCCCCCCeeEEEEEEEEECCCCCCCCHHHHhhhheEEEEEEEeEhhhhh
Confidence            478999999999999999999999999999999999999999999999999999999999999999987

>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional

Probab=99.92  E-value=4.2e-25  Score=159.60  Aligned_cols=68  Identities=24%  Similarity=0.296  Sum_probs=65.2

Q ss_pred             CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      .|.+|+||++++++++++|.+|+. .++|||+||++||||+++++++++|++||+|||++||+|+||+|
T Consensus        34 ~P~~F~Kp~~al~g~~~~i~~P~~-~~~~~E~EL~vvIGk~~~~v~~~~A~~~V~Gyti~nD~t~rd~q  101 (429)
T PRK15203         34 TAVWFIKPRNTVIRCGEPIPFPQG-EKVLSGATVALIVGKTATKVREEDAAEYIAGYALANDVSLPEES  101 (429)
T ss_pred             CCEEEecCcceeeCCCCcEECCCC-CCceEEEEEEEEECCccCCCCHHHHhhheeEEEEEEEeechhhc
Confidence            378999999999999999999997 47999999999999999999999999999999999999999987

>KOG1535|consensus

Probab=99.91  E-value=6.4e-25  Score=146.34  Aligned_cols=68  Identities=24%  Similarity=0.393  Sum_probs=67.0

Q ss_pred             ceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            3 QSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         3 ~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      |.+|+||.+++++++++|.+|...+.+|||+||++||||.++++++.+|++||+||+++.|+||||+|
T Consensus        37 P~~FlKptss~v~~g~~i~~p~~~~~lh~EvEL~vVigK~~~~v~~~~amd~v~Gy~valDmtARd~q  104 (217)
T KOG1535|consen   37 PFFFLKPTSSIVGPGGPIVIPPGSKGLHHEVELAVVIGKKGSSVKKKDAMDYVGGYAVALDMTARDWQ  104 (217)
T ss_pred             CeEEeecchhhcCCCCceEcCCCcCccceeEEEEEEeccccccCChhhcccccccEEEEeeccchhhh
Confidence            78999999999999999999999999999999999999999999999999999999999999999998

>PLN02856 fumarylacetoacetase

Probab=99.91  E-value=1.2e-24  Score=157.39  Aligned_cols=68  Identities=16%  Similarity=0.155  Sum_probs=65.0

Q ss_pred             ceEEEcCCCCeecCCCcEecCCC---------------CCceeeceEEEEEECCC---CCCCCHHhHhhhcceEEEEEec
Q psy539            3 QSTYIDNVNSMTLARDHHPGIAD---------------GSEVHHEVEMGIIISQR---CKKVNRYDALNCIAGYCLALDL   64 (70)
Q Consensus         3 ~~~f~K~~~~~~~~~~~i~~P~~---------------~~~ld~E~ELavvig~~---~~~v~~~~A~~~I~Gy~~~nD~   64 (70)
                      |.+|.|++++++++|.+|.+|.+               ++.+|||+||++||||.   ++++++++|++||+||+++|||
T Consensus       162 Pv~y~gr~sSvv~sg~~I~rP~gq~~~~~~~~~p~f~~s~~lDyE~ELavVIGk~~~~g~~I~~~~A~d~IfGytl~ND~  241 (424)
T PLN02856        162 PIGYHGRASSVVPSGTDIRRPRGQLHPNDGSSRPYFGPSAKLDFELEMAAFVGPGNELGKPIPVNEAKDHIFGLVLMNDW  241 (424)
T ss_pred             CCEEcCCCceEEcCCCceeCCCCCccCCCCCCCCcccCcCceEEEEEEEEEECcCccccCCCCHHHHHhhheEEEEeeec
Confidence            77899999999999999999984               67899999999999997   8999999999999999999999


Q ss_pred             cccccC
Q psy539           65 TEVRHL   70 (70)
Q Consensus        65 s~Rd~Q   70 (70)
                      |+||+|
T Consensus       242 SARDiQ  247 (424)
T PLN02856        242 SARDIQ  247 (424)
T ss_pred             hhhhhh
Confidence            999998

>TIGR01266 fum_ac_acetase fumarylacetoacetase

Probab=99.91  E-value=1.3e-24  Score=156.80  Aligned_cols=68  Identities=15%  Similarity=0.103  Sum_probs=65.3

Q ss_pred             ceEEEcCCCCeecCCCcEecCCC--------------CCceeeceEEEEEECCC---CCCCCHHhHhhhcceEEEEEecc
Q psy539            3 QSTYIDNVNSMTLARDHHPGIAD--------------GSEVHHEVEMGIIISQR---CKKVNRYDALNCIAGYCLALDLT   65 (70)
Q Consensus         3 ~~~f~K~~~~~~~~~~~i~~P~~--------------~~~ld~E~ELavvig~~---~~~v~~~~A~~~I~Gy~~~nD~s   65 (70)
                      |.+|+|++++++++|.+|.+|.+              ++.+|||+||++||||.   ++++++++|++||+||+++||||
T Consensus       155 Pv~y~g~~sSvv~sg~~I~rP~gq~~~~~~~~p~f~ps~~lD~E~ELavvIGk~~~~g~~vs~e~A~~~IfGy~l~ND~S  234 (415)
T TIGR01266       155 PVGYHGRASSIVVSGTPLRRPMGQTLPDNAKPPVFGPCKLLDMELEMAFFVGPGNRLGEPIPISKAEEHIFGVVLMNDWS  234 (415)
T ss_pred             CcEeccCCceEEcCCCceeCCCccccCCcccCCcccccCceEEEEEEEEEECcCcccCCcCCHHHHHhhheEEEEeeEcc
Confidence            78999999999999999999985              78899999999999998   89999999999999999999999


Q ss_pred             ccccC
Q psy539           66 EVRHL   70 (70)
Q Consensus        66 ~Rd~Q   70 (70)
                      +||+|
T Consensus       235 ARDiQ  239 (415)
T TIGR01266       235 ARDIQ  239 (415)
T ss_pred             hhhhh
Confidence            99998

This enzyme catalyzes the final step in the breakdown of tyrosine or phenylalanine to fumarate and acetoacetate.

>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional

Probab=99.90  E-value=1e-23  Score=152.38  Aligned_cols=69  Identities=22%  Similarity=0.327  Sum_probs=67.0

Q ss_pred             CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      .|.+|+||++++++++++|.+|+.++.+|||+||++||||.++++++++|++||+||+++||+|+||+|
T Consensus       246 ~P~~F~K~~~s~~g~~~~i~~P~~~~~ld~E~ELavVigk~~~~v~~~ea~~~V~Gy~~~nD~t~rd~q  314 (429)
T PRK15203        246 EPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQARKVSEADAMDYVAGYTVCNDYAIRDYL  314 (429)
T ss_pred             CCEEEEcCcceeeCCCCCEECCCCCCceEEEEEEEEEECCCCCCCCHHHHhhheeEEEEEEeccchhhh
Confidence            378999999999999999999999999999999999999999999999999999999999999999987

>PRK12764 hypothetical protein; Provisional

Probab=99.87  E-value=4.1e-22  Score=146.32  Aligned_cols=69  Identities=20%  Similarity=0.214  Sum_probs=66.8

Q ss_pred             CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      .|.+|+||++++++++++|.+|.....++||+||++||||.++++++++|++||+||+++||+|+||+|
T Consensus        44 ~P~~f~K~~~sl~~~g~~I~~p~~~~~l~~E~ELavVIgr~~~~v~~eea~~~I~Gyt~~nDvt~rD~~  112 (500)
T PRK12764         44 QPSYFLKPSSSLALSGGTVERPAGTELLAFEGEIALVIGRPARRVSPEDAWSHVAAVTAANDLGVYDLR  112 (500)
T ss_pred             CCEEEEeccceEeCCCCeEECCCCCCceeEEEEEEEEECCcCCCCCHHHHHhhheEEEEecceeeehhh
Confidence            478999999999999999999998889999999999999999999999999999999999999999986

>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit

Probab=99.84  E-value=9.3e-21  Score=125.53  Aligned_cols=69  Identities=19%  Similarity=0.284  Sum_probs=65.5

Q ss_pred             CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      .|.+|+|+++++++++++|++|+....++||+|||+||||.++++++++|.+||+||+++||+|+|+.|
T Consensus        32 ~P~~f~k~~~~~~~~g~~i~~p~~~~~~~~E~ELa~vigr~~~~~~~~~a~~~v~g~~~~~dit~~~~~  100 (205)
T TIGR02305        32 TPVLYIKPRNTHNGCGQPIPLPAGVEKLRSGATLALVVGRTACRVREEEALDYVAGYALVNDVSLPEDS  100 (205)
T ss_pred             CCEEEEcCcceEeCCCCeEECCCCCCCccEEEEEEEEECCCCCCCCHHHHHHhhheeEEeeeeehhhhh
Confidence            478999999999999999999998889999999999999999999999999999999999999998753

This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).

>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I

Probab=99.80  E-value=7.5e-20  Score=121.20  Aligned_cols=69  Identities=22%  Similarity=0.269  Sum_probs=63.8

Q ss_pred             CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCC-CHHhHhhhcceEEEEEeccccccC
Q psy539            2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKV-NRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v-~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      .|.+|.|+++++.++|++|.+|..+..+++|+||+++||+.++++ ++++|++||+||+++||+|+|++|
T Consensus        31 ~p~~~~~~~~~~~~~g~~i~~p~~~~~~~~E~Ela~vig~~~~~~~~~~ea~~~i~g~~~~~d~~~r~~~  100 (218)
T PF01557_consen   31 EPVFFMKPPSSLVGSGAPIPLPRGSRRLDYEAELAFVIGRPLRNVYTPEEALDAIAGYTPANDVTARDLQ  100 (218)
T ss_dssp             SGEEEEEEGGGEEETTSEEEECTTSSSEEEEEEEEEEESS-BSSTH-HHHHGGGEEEEEEEEEEEEHHHH
T ss_pred             CCeEEecCCceeecCCCceecCccccccCcceEEEEEEecCCCCCCCHHHHHHHhhEEeeecccchhhhh
Confidence            356999999999999999999999999999999999999999999 999999999999999999999865

; InterPro: IPR002529 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the C-terminal domain of fumarylacetoacetase, as well as other domains that share a homologous sequence, including: 5-carboxymethyl-2-hydroxymuconate delta-isomerase (CHM isomerase; 5.3.3.10 from EC), which catalyses the conversion of 5-carboxymethyl-2-hydroxymuconate to 5-carboxy-2-oxohept-3-enedioate []. 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (OPET decarboxylase; 4.1.1.68 from EC), which catalyses the conversion of 5-oxopent-3-ene-1,2,5-tricarboxylate to 2-oxohept-3-enedioate and carbon dioxide. Bifunctional enzyme HpcE (OPET decarboxylase 4.1.1.68 from EC/HHDD isomerase 5.3.3.10 from EC), which is a duplication consisting of a tandem repeat of two FAH C-terminal-like domains. This enzyme is responsible for the degradation of 4-hydroxyphenylacetate, a product of tyrosine and phenylalanine metabolism also released by lignin catabolism []. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1SAW_B 3LZK_B 3S52_B 2WQT_Q 1SV6_C 2DFU_B 1WZO_D 3QDF_A 1GTT_B 1I7O_C ....

>KOG2843|consensus

Probab=99.47  E-value=4.7e-14  Score=99.28  Aligned_cols=68  Identities=15%  Similarity=0.131  Sum_probs=58.5

Q ss_pred             ceEEEcCCCCeecCCCcEecCCC--------------CCceeeceEEEEEECCC----CCCCCHHhHhhhcceEEEEEec
Q psy539            3 QSTYIDNVNSMTLARDHHPGIAD--------------GSEVHHEVEMGIIISQR----CKKVNRYDALNCIAGYCLALDL   64 (70)
Q Consensus         3 ~~~f~K~~~~~~~~~~~i~~P~~--------------~~~ld~E~ELavvig~~----~~~v~~~~A~~~I~Gy~~~nD~   64 (70)
                      |.-|....++++-+|.||..|-+              ++-+|||.|+|+.+|-.    +..++.++|+++|+|++++|||
T Consensus       156 PVGYHGRASSvVVSGTpirRP~GQtkpddae~PvfGacKLlDfELEMAFFvGgpgN~LGepipi~kA~~~iFG~vLMNDW  235 (420)
T KOG2843|consen  156 PVGYHGRASSVVVSGTPIRRPLGQTKPDDAEKPVFGACKLLDFELEMAFFVGGPGNQLGEPIPIDKAWKNIFGFVLMNDW  235 (420)
T ss_pred             cccccCceeeEEEcCCcccCcccCCCCCCCCCCcccchhhccceeeeeeEecCCccccCCccchhhhhhheeeEEEeccc
Confidence            44566778889989999988743              56789999999999955    4678999999999999999999


Q ss_pred             cccccC
Q psy539           65 TEVRHL   70 (70)
Q Consensus        65 s~Rd~Q   70 (70)
                      |+||+|
T Consensus       236 SARDIQ  241 (420)
T KOG2843|consen  236 SARDIQ  241 (420)
T ss_pred             chhhcc
Confidence            999998

>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase

Probab=98.63  E-value=9.9e-08  Score=65.18  Aligned_cols=60  Identities=13%  Similarity=0.070  Sum_probs=48.0

Q ss_pred             CCCeecCCCcEecCCCCCceeeceEEEEEECCCC--CCCCHHhHh---hhcceEEEEEeccccccC
Q psy539           10 VNSMTLARDHHPGIADGSEVHHEVEMGIIISQRC--KKVNRYDAL---NCIAGYCLALDLTEVRHL   70 (70)
Q Consensus        10 ~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~--~~v~~~~A~---~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      .+.+..++.++..+... ..++|+||+++|||.+  ++++++++.   ++|+++.-.+|.+.||+|
T Consensus        80 ~~~~~~~g~~i~~~~~~-~~~vE~Elafvlg~~l~~~~~t~~ev~~ai~~v~~~~El~D~r~~~~~  144 (255)
T TIGR03220        80 DGMVYNEGEPIPTDTLI-QPKAEGEIAFVLKKDLMGPGVTAADVLAATECVMPCFEIVDSRIRDWK  144 (255)
T ss_pred             ccccccCCCeeccccCc-cceeeeEEEEEECCCCCCCCCCHHHHHHHHhheeeeEEEcccccccCC
Confidence            34455678889888764 7999999999999996  589999765   566666777899999986

Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.

>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]

Probab=98.38  E-value=4.1e-07  Score=64.71  Aligned_cols=57  Identities=16%  Similarity=0.050  Sum_probs=51.2

Q ss_pred             ceEEEc-CCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEecccccc
Q psy539            3 QSTYID-NVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRH   69 (70)
Q Consensus         3 ~~~f~K-~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~   69 (70)
                      +-+|+| ++.+-+|+|+.|-+.+.+....-|.|+++++...++          |.|||++||+++||+
T Consensus       169 aEIFtKaqpmssVG~Ga~Igv~~~S~WnnPEPEvvl~~dS~G~----------I~GaTlgnDVnlRD~  226 (379)
T COG3970         169 AEIFTKAQPMSSVGHGAQIGVRPDSEWNNPEPEVVLAVDSSGK----------IVGATLGNDVNLRDF  226 (379)
T ss_pred             hhheecCCccccccccceeeeccccccCCCCCeEEEEEcCCCc----------EEeeeecCccccccc
Confidence            347899 567889999999998888889999999999998876          999999999999996

>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase

Probab=97.73  E-value=0.00018  Score=49.62  Aligned_cols=60  Identities=18%  Similarity=0.182  Sum_probs=47.9

Q ss_pred             CCCeecCCCcEecCCCCCceeeceEEEEEECCCC--CCCCHHhHhhhcceEEEEEeccccccC
Q psy539           10 VNSMTLARDHHPGIADGSEVHHEVEMGIIISQRC--KKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus        10 ~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~--~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      .+.+..++..++.+. -.+.-+|+||++++|+..  .+++.+++.++|.++..+.++..+.++
T Consensus        85 ~~~~~~~g~~~~~~~-~~~p~vE~Eiaf~l~~~l~~~~~t~~ev~~ai~~v~paiEi~dsr~~  146 (267)
T TIGR02312        85 DDMFFEDGSTIPADR-FIQPRVEVELAFVLKKDLEGPNVTIFDVLNATDYVVPALEIIDARIE  146 (267)
T ss_pred             CccccCCCCeecccc-ccccccceEEEEEECCCCCCCCCCHHHHHHHhheEEeeEEEeecccc
Confidence            345556677776643 235789999999999987  478999999999999999999887653

This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.

>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional

Probab=97.46  E-value=0.00042  Score=47.54  Aligned_cols=58  Identities=14%  Similarity=0.087  Sum_probs=46.0

Q ss_pred             CCeecCCCcEecCCCCCceeeceEEEEEECCCCC--CCCHHhHhhhcceEEEEEecccccc
Q psy539           11 NSMTLARDHHPGIADGSEVHHEVEMGIIISQRCK--KVNRYDALNCIAGYCLALDLTEVRH   69 (70)
Q Consensus        11 ~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~--~v~~~~A~~~I~Gy~~~nD~s~Rd~   69 (70)
                      +.+..++..+.++.. .....|+||++++|+...  +++++++.++|.++..+.++-.+.+
T Consensus        85 ~~~~~~g~~~~~~~~-~~~~iE~Eiaf~l~~dl~~~~~t~~ev~~ai~~v~paiEivdsr~  144 (262)
T PRK11342         85 DMCYGDNEIIPFSRV-LQPRIEAEIALVLNRDLPATDITFDELYNAIEWVLPALEVVGSRI  144 (262)
T ss_pred             hhhcCCCCeeccccc-CCcceeeEEEEEECCCCCCCCCCHHHHHHhhceEeeeEEecCCcc
Confidence            455566777766554 357889999999999875  6899999999999999988876544

>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.03  E-value=0.0089  Score=42.20  Aligned_cols=56  Identities=14%  Similarity=0.170  Sum_probs=45.2

Q ss_pred             ceEEEcCC-CCeecCCCcEecCCCCCceeeceEEE--EEECCCCCCCCHHhHhhhcceEEEEEeccc
Q psy539            3 QSTYIDNV-NSMTLARDHHPGIADGSEVHHEVEMG--IIISQRCKKVNRYDALNCIAGYCLALDLTE   66 (70)
Q Consensus         3 ~~~f~K~~-~~~~~~~~~i~~P~~~~~ld~E~ELa--vvig~~~~~v~~~~A~~~I~Gy~~~nD~s~   66 (70)
                      |-.|.|-. +.++.||.+++.|+.++.=--|.||+  -+||..+..        |=.||+++|.+|.
T Consensus       141 PEWFyKG~G~~~vapGa~l~sPaFAedggEEpEiaGiYlig~dg~p--------~RlGfal~NEfSD  199 (333)
T COG3802         141 PEWFYKGDGTVAVAPGAPLPSPAFAEDGGEEPEIAGIYLIGDDGTP--------YRLGFALANEFSD  199 (333)
T ss_pred             cceEEeCCCcEEecCCCCCCChhhhhccCCCceeeEEEEECCCCce--------eEEeeeecchhhh
Confidence            56788854 56779999999999987777788886  568887654        6689999999985

>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.26  E-value=0.016  Score=40.49  Aligned_cols=50  Identities=18%  Similarity=0.055  Sum_probs=39.6

Q ss_pred             eecCCCcEecCCCCCceeeceEEEEEECCCC--CCCCHHhHhhhcceEEEEEe
Q psy539           13 MTLARDHHPGIADGSEVHHEVEMGIIISQRC--KKVNRYDALNCIAGYCLALD   63 (70)
Q Consensus        13 ~~~~~~~i~~P~~~~~ld~E~ELavvig~~~--~~v~~~~A~~~I~Gy~~~nD   63 (70)
                      ....|.+|+.+.... ..+|+||+++++|+.  .++|..|+++||.-+..+..
T Consensus        88 ~f~eg~~ip~~r~~~-prvE~EiafvL~kdlpa~~~T~~d~l~a~~~v~palE  139 (264)
T COG3971          88 AFNEGADIPFSRFIQ-PRVEVEIAFVLKKDLPAPDCTVADVLNATDYVLPALE  139 (264)
T ss_pred             HhhcCCCCCcccccc-eeeeeeEEEEecCCCCCCCCCHHHHHHHHHhhhhhhh
Confidence            345677788777664 499999999999996  48999999999886665544

>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase

Probab=94.25  E-value=0.3  Score=33.62  Aligned_cols=52  Identities=10%  Similarity=-0.047  Sum_probs=39.4

Q ss_pred             eecCCCcEecCCCCCceeeceEEEEEECCCC--CCCCHHhHhhhcceEEEEEecc
Q psy539           13 MTLARDHHPGIADGSEVHHEVEMGIIISQRC--KKVNRYDALNCIAGYCLALDLT   65 (70)
Q Consensus        13 ~~~~~~~i~~P~~~~~ld~E~ELavvig~~~--~~v~~~~A~~~I~Gy~~~nD~s   65 (70)
                      +..++.++..... ...-.|+|+++++|+..  .+.+.+++.++|..+..+..+-
T Consensus        91 ~~~~g~~~~~~~~-~~p~vE~Eiaf~l~~~l~~~~~t~~ev~~ai~~v~paiEiv  144 (263)
T TIGR03218        91 SVPDGGEIKTSEL-IHPKVEAEIAFVTKAPLKGPGCHIGDVLAATDFVMPAVEVI  144 (263)
T ss_pred             cccCCCeeccccc-CcceeeeEEEEEECCCCCCCCCCHHHHHHhhcEEEeeEEec
Confidence            3345555555443 34689999999999986  5689999999999998887664

Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	70
1saw_A	225	X-Ray Structure Of Homo Sapiens Protein Flj36880 Le		2e-05

>pdb|1SAW|A Chain A, X-Ray Structure Of Homo Sapiens Protein Flj36880 Length = 225

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 27/37 (72%)
Query: 29  VHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
           +HHE+E+G+++ +RC+ V    A++ + GY L LD+T
Sbjct: 69  LHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMT 105

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	70
1saw_A	225	Hypothetical protein FLJ36880; structural genomics	2e-14
3s52_A	221	Putative fumarylacetoacetate hydrolase family Pro;	8e-14
3l53_A	224	Putative fumarylacetoacetate isomerase/hydrolase;	1e-13
1nkq_A	259	Hypothetical 28.8 kDa protein in PSD1-SKO1 interge	5e-13
1gtt_A	429	4-hydroxyphenylacetate degradation bifunctional is	5e-13
1gtt_A	429	4-hydroxyphenylacetate degradation bifunctional is	3e-12
1wzo_A	246	HPCE; structural genomics, riken structural genomi	7e-13
2dfu_A	264	Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;	6e-12
3rr6_A	265	Putative uncharacterized protein; structural genom	8e-12
3r6o_A	329	2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssg	5e-10
3lzk_A	359	Fumarylacetoacetate hydrolase family protein; stru	7e-07
2q18_X	293	2-keto-3-deoxy-D-arabinonate dehydratase; FAH-fami	5e-05
1hyo_A	421	Fumarylacetoacetate hydrolase; beta-sandwich roll;	8e-04

>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1 Length = 225

 Score = 63.8 bits (156), Expect = 2e-14
 Identities = 15/40 (37%), Positives = 27/40 (67%)

Query: 27  SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTE 66
             +HHE+E+G+++ +RC+ V    A++ + GY L LD+T 
Sbjct: 67  RNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTA 106

>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} PDB: 1nr9_A Length = 221

 Score = 61.8 bits (151), Expect = 8e-14
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 27  SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTE 66
             VHHE+E+ ++I    K+ +       IAGY +ALDLT 
Sbjct: 68  GSVHHEIELAVLIGTPLKQASEDRVARAIAGYGVALDLTL 107

>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1 Length = 259

 Score = 60.1 bits (146), Expect = 5e-13
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 23  IADGSEVHHEVEMGIIISQRCKKVNRY---DALNCIAGYCLALDLTE 66
           I  G +VHHE+E+ +I+S+    V +    +  + I+G  LALDLT 
Sbjct: 78  IPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTA 124

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Length = 429

 Score = 60.7 bits (148), Expect = 5e-13
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 25 DGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTE 66
           G +V     + +I+ +   KV   DA   IAGY LA D++ 
Sbjct: 56 QGEKVLSGATVALIVGKTATKVREEDAAEYIAGYALANDVSL 97

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Length = 429

 Score = 58.4 bits (142), Expect = 3e-12
 Identities = 11/40 (27%), Positives = 24/40 (60%)

Query: 27  SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTE 66
             +H+E E+ ++I ++ + V+  DA++ +AGY +  D   
Sbjct: 271 EYMHYEAELVVVIGKQARNVSEADAMDYVAGYTVCNDYAI 310

>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus} Length = 246

 Score = 59.5 bits (145), Expect = 7e-13
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 27  SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTE 66
             VH+EVE+ +++ +  K+V   DAL+ + GY +A DL  
Sbjct: 92  RFVHYEVELAVVVGRPMKRVRAKDALDYVLGYTIANDLVA 131

>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus} Length = 264

 Score = 57.2 bits (139), Expect = 6e-12
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 19  HHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTE 66
            +P   +  E+H+E E+ +++  R + V    AL+ + GY +A+D+T 
Sbjct: 103 PYPFFTE--ELHYEGELAVVVGDRMRHVPPEKALDHVLGYTVAVDITA 148

>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A Length = 265

 Score = 56.8 bits (138), Expect = 8e-12
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 27  SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTE 66
           +EVHHE E+ I+I + CK V    A   I GY +  D++ 
Sbjct: 113 TEVHHEGELAIVIGRPCKDVPAARAAENILGYTIGNDVSA 152

>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus} Length = 329

 Score = 52.4 bits (126), Expect = 5e-10
 Identities = 12/40 (30%), Positives = 24/40 (60%)

Query: 27  SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTE 66
             + +E+E+ ++I +   ++ R  A+  +AGY LA D+T 
Sbjct: 153 HALDYEIEIAVVIGKPGYRIERSQAIKHVAGYMLANDITA 192

>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti} Length = 359

 Score = 43.3 bits (102), Expect = 7e-07
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 23  IADGSE-VHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70
           +AD +  +  E E  +I+          +A   I    L  D++  R L
Sbjct: 150 MADDAWGIDMEGEAAVIVDDVPMGATLDEAKAAIRLVMLVNDVSL-RGL 197

>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A Length = 293

 Score = 38.1 bits (89), Expect = 5e-05
 Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 10/43 (23%)

Query: 24  ADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTE 66
           +D      E E+ +++    K          I GY +  D++ 
Sbjct: 135 SDSEWTLPEPELAVVLDSNGK----------ILGYTIMDDVSA 167

>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A Length = 421

 Score = 34.7 bits (79), Expect = 8e-04
 Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 3/51 (5%)

Query: 18  DHHPGIADGSEVHHEVEMGIIISQ---RCKKVNRYDALNCIAGYCLALDLT 65
              P       +  E+EM   +       + +    A   I G  L  D +
Sbjct: 187 SKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWS 237

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	70
3lzk_A	359	Fumarylacetoacetate hydrolase family protein; stru	99.94
4dbf_A	288	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxa	99.94
3rr6_A	265	Putative uncharacterized protein; structural genom	99.94
3l53_A	224	Putative fumarylacetoacetate isomerase/hydrolase;	99.93
3r6o_A	329	2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssg	99.93
3s52_A	221	Putative fumarylacetoacetate hydrolase family Pro;	99.92
1wzo_A	246	HPCE; structural genomics, riken structural genomi	99.91
2dfu_A	264	Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;	99.9
1saw_A	225	Hypothetical protein FLJ36880; structural genomics	99.89
1hyo_A	421	Fumarylacetoacetate hydrolase; beta-sandwich roll;	99.89
1gtt_A	429	4-hydroxyphenylacetate degradation bifunctional is	99.88
1gtt_A	429	4-hydroxyphenylacetate degradation bifunctional is	99.86
1nkq_A	259	Hypothetical 28.8 kDa protein in PSD1-SKO1 interge	99.86
2q18_X	293	2-keto-3-deoxy-D-arabinonate dehydratase; FAH-fami	99.79
2eb4_A	267	2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60	99.66
2wqt_A	270	2-keto-4-pentenoate hydratase; lyase, dodecahedral	99.49

>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti}

Probab=99.94  E-value=1.6e-27  Score=168.27  Aligned_cols=69  Identities=17%  Similarity=0.069  Sum_probs=67.3

Q ss_pred             CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      .|.+|+|+++++++++++|.+|..++.+|||+||||||||.++++++++|++||+|||++||||+||+|
T Consensus       130 ~P~~F~k~~ssv~g~~~~I~~P~~s~~lD~E~ELavVIGk~~~~v~~e~A~~~I~Gytl~ND~SaRD~Q  198 (359)
T 3lzk_A          130 DPLIYQGGSDSFLGPRDPILMADDAWGIDMEGEAAVIVDDVPMGATLDEAKAAIRLVMLVNDVSLRGLI  198 (359)
T ss_dssp             SCCEEEECCSSCBCTTSCEEESCTTSCEECCEEEEEEECCBCTTCCHHHHHHTEEEEEEEECCEETTTH
T ss_pred             ccEEEECCCceEECCCCCEECCCCCCCeeEEEEEEEEECCCCCCCCHHHHHhhhcEEEEEEeccHHHhh
Confidence            378999999999999999999999999999999999999999999999999999999999999999997

>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A

Probab=99.94  E-value=1.4e-27  Score=164.69  Aligned_cols=69  Identities=16%  Similarity=0.243  Sum_probs=67.2

Q ss_pred             CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      .|.+|+||++++++++++|.+|+.++++|||+||||||||.++++++++|++||+||+++||+|+||+|
T Consensus       106 ~P~~F~K~~~sv~g~~~~I~~P~~~~~~d~E~ELavVIGk~~~~v~~~~A~~~I~Gytv~nDvsaRd~Q  174 (288)
T 4dbf_A          106 PPTLFLKPPTAVTGPESPIRIPSFATKVEFEGELAVVIGKPCKNVKADDWKSVVLGFTIINDVSSRDLQ  174 (288)
T ss_dssp             CCEEEEECGGGEECTTCCEEECTTCCSEECCEEEEEEECSCBSSCCGGGGGGGEEEEEEEECCEEHHHH
T ss_pred             CCEEEEeCcceeeCCCCceECCCCCCceeEEEEEEEEECCCcCCCCHHHHhhheeEEEEEEEeEhHHhh
Confidence            478999999999999999999999999999999999999999999999999999999999999999987

>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A

Probab=99.94  E-value=4e-27  Score=160.79  Aligned_cols=69  Identities=29%  Similarity=0.364  Sum_probs=67.1

Q ss_pred             CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      .|.+|+||++++++++++|.+|..+.++|||+||||||||.++++++++|++||+||+++||+|+||+|
T Consensus        88 ~P~~F~K~~~s~~g~~~~I~~P~~~~~~d~E~ELavVIGk~~~~v~~~~A~~~V~Gyt~~nDvsaRd~q  156 (265)
T 3rr6_A           88 SPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELAIVIGRPCKDVPAARAAENILGYTIGNDVSARDHQ  156 (265)
T ss_dssp             CCCEEEECGGGEECTTSCEECCTTCSCEEECEEEEEEECSCBSSCCGGGTGGGEEEEEEEECCEEHHHH
T ss_pred             CCEEEEeCcceEeCCCCceECCCCCCceeEEEEEEEEECCcCCCCCHHHHHhheeEEEEEEEeEhHHhh
Confidence            478999999999999999999999999999999999999999999999999999999999999999987

>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus}

Probab=99.93  E-value=2.1e-26  Score=161.21  Aligned_cols=69  Identities=22%  Similarity=0.354  Sum_probs=66.8

Q ss_pred             CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      .|.+|+|+++++++++++|.+|..+..+|||+||||||||.++++++++|++||+||+++||+|+||+|
T Consensus       128 ~P~~F~K~~~s~~g~~~~I~~P~~~~~~d~E~ELavVIGk~~~~v~~e~A~~~I~Gytv~NDvSaRd~q  196 (329)
T 3r6o_A          128 DPVVFMKSPTSISGPRDAVIAPRTSHALDYEIEIAVVIGKPGYRIERSQAIKHVAGYMLANDITARDVA  196 (329)
T ss_dssp             CCEEEEECGGGEECTTCCEEECTTCSCEECCEEEEEEECSCBSSCCGGGGGGGEEEEEEEECCEEHHHH
T ss_pred             CCEEEEcccceEECCCCceECCCCCCCccEEEEEEEEECCCCCCCCHHHHHhhheEEEEEEEeEHHHHh
Confidence            478999999999999999999999999999999999999999999999999999999999999999975

>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A

Probab=99.92  E-value=3.4e-26  Score=152.33  Aligned_cols=69  Identities=28%  Similarity=0.335  Sum_probs=67.0

Q ss_pred             CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      .|.+|+||++++++++++|.+|..++++|||+|||+||||.++++++++|++||+||+++||+|+||+|
T Consensus        43 ~P~~F~K~~~~~~~~g~~i~~p~~~~~~d~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nDvs~Rd~q  111 (221)
T 3s52_A           43 EPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVLIGTPLKQASEDRVARAIAGYGVALDLTLRELQ  111 (221)
T ss_dssp             SCEEEEEEGGGEEETTSCBCCCSSSSCEEECEEEEEEECSCBSSCCHHHHHHHEEEEEEEECCEEHHHH
T ss_pred             ceEEEEcCCceEeCCCCeEECCCCCCCccEEEEEEEEECCCCCCCCHHHHHhhheEEEEEEEeEHHHHh
Confidence            478999999999999999999999999999999999999999999999999999999999999999987

>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus}

Probab=99.91  E-value=2.4e-24  Score=144.82  Aligned_cols=69  Identities=23%  Similarity=0.300  Sum_probs=66.9

Q ss_pred             CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      .|.+|+|+++++++++++|.+|..+..+|||+||++||||.++++++++|++||+||+++||+|+||+|
T Consensus        67 ~P~~f~k~~~~~~~~g~~i~~p~~~~~~~~E~ELavvig~~~~~v~~~~a~~~i~g~~~~nD~s~rd~q  135 (246)
T 1wzo_A           67 EPALFWKPNTSLLPHKGVVLYPKGARFVHYEVELAVVVGRPMKRVRAKDALDYVLGYTIANDLVARDYV  135 (246)
T ss_dssp             SCEEEEECGGGEECTTCCEEECTTCSCEECCEEEEEEECSCBSSCCHHHHGGGEEEEEEEECCEEGGGC
T ss_pred             CCEEEEECcccEeCCCCeEECCCCCCceeEEEEEEEEECCCCCCCCHHHHHhheeEEEEEEECchHHhc
Confidence            478999999999999999999998889999999999999999999999999999999999999999998

>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}

Probab=99.90  E-value=3.1e-24  Score=146.07  Aligned_cols=69  Identities=22%  Similarity=0.345  Sum_probs=66.6

Q ss_pred             CceEEEcCCCCeecCC---------CcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            2 SQSTYIDNVNSMTLAR---------DHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         2 ~~~~f~K~~~~~~~~~---------~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      .|.+|+|+++++++++         ++|.+|..++++|||+||++||||.++++++++|++||+||+++||+|+||+|
T Consensus        75 ~P~~f~k~~~s~~~~~~~~rp~g~~~~i~~p~~~~~~d~E~ELavvig~~~~~v~~~~a~~~I~gy~~~nDvt~Rd~q  152 (264)
T 2dfu_A           75 EPGLFLKGPNALARPGNPRDPWGTAEPVPYPFFTEELHYEGELAVVVGDRMRHVPPEKALDHVLGYTVAVDITARDVQ  152 (264)
T ss_dssp             SCCEEEECGGGEECCCBTTBHHHHSCCEEECSSCSCEECCEEEEEEECSCBSSCCHHHHGGGEEEEEEEECCEEHHHH
T ss_pred             CCEEEEeccceEEccCCcccccCCCcceecCCCCCceeEEEEEEEEECCCCCCCCHHHHHHHhhEeEEEEEeEhhhhh
Confidence            3789999999999999         99999999889999999999999999999999999999999999999999987

>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1

Probab=99.89  E-value=3.6e-24  Score=142.54  Aligned_cols=69  Identities=23%  Similarity=0.439  Sum_probs=66.6

Q ss_pred             CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      .|.+|.|+++++++++++|.+|..++.+|||+||++||||.++++++++|++||+||+++||+|+||+|
T Consensus        42 ~P~~f~k~~~~~~~~g~~i~~p~~~~~~~~E~ELavvig~~~~~v~~~~a~~~i~g~~~~nDvt~r~~q  110 (225)
T 1saw_A           42 EPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQ  110 (225)
T ss_dssp             CCCEEEEEGGGEEETTSCEECCTTCSCEEECEEEEEEESSCBCSCCTTTGGGSEEEEEEEECCEEHHHH
T ss_pred             CCEEEECCcceeeCCCCeEECCCCCCCccEEEEEEEEECCCCCCCCHHHHHHhheEEEecccccHHHHh
Confidence            378999999999999999999999889999999999999999999999999999999999999999987

>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A

Probab=99.89  E-value=5.5e-24  Score=152.66  Aligned_cols=68  Identities=15%  Similarity=0.109  Sum_probs=65.4

Q ss_pred             ceEEEcCCCCeecCCCcEecCCC--------------CCceeeceEEEEEECCC---CCCCCHHhHhhhcceEEEEEecc
Q psy539            3 QSTYIDNVNSMTLARDHHPGIAD--------------GSEVHHEVEMGIIISQR---CKKVNRYDALNCIAGYCLALDLT   65 (70)
Q Consensus         3 ~~~f~K~~~~~~~~~~~i~~P~~--------------~~~ld~E~ELavvig~~---~~~v~~~~A~~~I~Gy~~~nD~s   65 (70)
                      |.+|+|++++++++|++|.+|..              ++.+|||+||||||||.   ++++++++|++||+||+++||||
T Consensus       158 Pv~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~p~~~~s~~lD~E~ELavvIG~~~~~g~~v~~~~A~~~I~Gy~l~ND~S  237 (421)
T 1hyo_A          158 PVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWS  237 (421)
T ss_dssp             CCEEECCSTTEEETTCCEECCEEEECSCTTSCCEEEECSCEECBEEEEEEECSCCCTTCCCCHHHHGGGEEEEEEEECCE
T ss_pred             CEEEEcccceEEcCCCeEECCCCcccCccccccccccccCceEEEEEEEEECcccccCCCCCHHHHHHhhcEEEEEEecc
Confidence            78999999999999999999986              78999999999999999   78999999999999999999999


Q ss_pred             ccccC
Q psy539           66 EVRHL   70 (70)
Q Consensus        66 ~Rd~Q   70 (70)
                      +||+|
T Consensus       238 aRdiQ  242 (421)
T 1hyo_A          238 ARDIQ  242 (421)
T ss_dssp             EHHHH
T ss_pred             HHhhh
Confidence            99987

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A

Probab=99.88  E-value=6.5e-23  Score=146.65  Aligned_cols=68  Identities=24%  Similarity=0.275  Sum_probs=65.5

Q ss_pred             CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      .|.+|+|++++++++|++|.+|..++ +|||+||++||||.++++++++|++||+||+++||+|+||+|
T Consensus        34 ~P~~f~k~~~~~~~~g~~i~~p~~~~-~~~E~Elavvig~~~~~v~~~~a~~~i~gy~~~nD~s~Rd~~  101 (429)
T 1gtt_A           34 TAVWFIKPRNTVIGCGEPIPFPQGEK-VLSGATVALIVGKTATKVREEDAAEYIAGYALANDVSLPEES  101 (429)
T ss_dssp             SCEEEEECGGGEECTTCCEEECTTCC-EECCEEEEEEECSCBSSCCGGGGGGGEEEEEEEECCBSCCCC
T ss_pred             CCEEEEcCcceEEcCCCeeecCCCCC-ccEEEEEEEEECCCCCCCCHHHHHhHhhEEEEEEEeeehhhh
Confidence            37899999999999999999999888 999999999999999999999999999999999999999976

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A

Probab=99.86  E-value=1.9e-22  Score=144.21  Aligned_cols=69  Identities=19%  Similarity=0.284  Sum_probs=66.4

Q ss_pred             CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccc-cC
Q psy539            2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVR-HL   70 (70)
Q Consensus         2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd-~Q   70 (70)
                      .|.+|+|+++++++++++|.+|..+.++|||+||++||||.++++++++|++||+||+++||+|+|| +|
T Consensus       246 ~P~~f~k~~~~~~~~g~~i~~p~~~~~~~~E~Elavvig~~~~~v~~~~a~~~i~g~~~~nD~t~Rd~lq  315 (429)
T 1gtt_A          246 EPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQARNVSEADAMDYVAGYTVCNDYAIRDYLE  315 (429)
T ss_dssp             SCCEEEECGGGEECTTEEEEECTTCSCEECCEEEEEEECSCBSSCCTTTGGGGEEEEEEEECCEEGGGCC
T ss_pred             CCEEEEcCcceEeCCCCeEEcCCCCCCccEEEEEEEEECCCCCCCCHHHHHhhheEEEEEEEcccchhhh
Confidence            4789999999999999999999988999999999999999999999999999999999999999999 46

>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1

Probab=99.86  E-value=2.6e-22  Score=136.40  Aligned_cols=68  Identities=25%  Similarity=0.343  Sum_probs=63.9

Q ss_pred             CceEEEcCCCCeecC------------------------C-CcEecCCCCCceeeceEEEEEECCCCCCCCH---HhHhh
Q psy539            2 SQSTYIDNVNSMTLA------------------------R-DHHPGIADGSEVHHEVEMGIIISQRCKKVNR---YDALN   53 (70)
Q Consensus         2 ~~~~f~K~~~~~~~~------------------------~-~~i~~P~~~~~ld~E~ELavvig~~~~~v~~---~~A~~   53 (70)
                      .|.+|+||+++++++                        + ++|.+|..+ ++|||+||++||||.++++++   ++|++
T Consensus        33 ~P~~F~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~p~~~-~~d~E~ELavvIg~~~~~v~~~t~~ea~~  111 (259)
T 1nkq_A           33 QPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPRGV-KVHHEIELALIVSKHLSNVTKMKPEEVYD  111 (259)
T ss_dssp             CCCEEEECGGGEEBCTTCC------CCSCSCCCCCTTSCCBCCEEECTTC-CEEECEEEEEEECSCBCSCCCCCGGGTGG
T ss_pred             CCEEEeeChhhEecccccccccccccccccccccccccCCCCcEEcCCCC-cccEEEEEEEEECCCCCCCCcCCHHHHHh
Confidence            378999999999998                        4 999999987 699999999999999999987   99999


Q ss_pred             hcceEEEEEeccccccC
Q psy539           54 CIAGYCLALDLTEVRHL   70 (70)
Q Consensus        54 ~I~Gy~~~nD~s~Rd~Q   70 (70)
                      ||+||+++||+|+||+|
T Consensus       112 ~I~g~~~~nDvt~Rd~q  128 (259)
T 1nkq_A          112 SISGVALALDLTARNVQ  128 (259)
T ss_dssp             GEEEEEEEECCEEHHHH
T ss_pred             hhhEEEEEEeeeHHHhh
Confidence            99999999999999987

>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A

Probab=99.79  E-value=7e-20  Score=125.75  Aligned_cols=58  Identities=16%  Similarity=0.172  Sum_probs=54.4

Q ss_pred             ceEEEcC-CCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            3 QSTYIDN-VNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         3 ~~~f~K~-~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      |.+|+|+ ++++++++++|.+|..+..+|||+||||||||.++          |+||+++||+|+||+|
T Consensus       113 P~~F~k~~~~~~~g~~~~i~~p~~~~~~d~E~ELavvIg~~~~----------i~Gyt~~nDvs~Rd~q  171 (293)
T 2q18_X          113 PEIFFKATPNRCVGHGEAIAVRSDSEWTLPEPELAVVLDSNGK----------ILGYTIMDDVSARDLE  171 (293)
T ss_dssp             CEEEEEECGGGEECTTSCEEECTTCSCEECCEEEEEEECTTCC----------EEEEEEEEECEEHHHH
T ss_pred             CEEEECCCCCeEecCCCEEEcCCCCCCcceEEEEEEEECCCCc----------CceEEEEEEeEeehhh
Confidence            6799997 68999999999999999999999999999999874          9999999999999987

>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A

Probab=99.66  E-value=1.3e-16  Score=108.10  Aligned_cols=67  Identities=15%  Similarity=0.041  Sum_probs=60.7

Q ss_pred             ceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCC--CCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            3 QSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQR--CKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         3 ~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~--~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      |.++.++++++++++++|++|... +++||+||++||||.  ++++++++|++||+||+++||++.|++|
T Consensus        78 P~~~~l~~~~~~~~g~~i~~p~~~-~~~~E~ELa~vig~~l~~~~vt~~~a~~~v~g~~~~~ei~d~r~~  146 (267)
T 2eb4_A           78 PDYGALLDDMFFHDGSDIPTDRFI-VPRIEVELAFVLAKPLRGPNCTLFDVYNATDYVIPALELIDARCH  146 (267)
T ss_dssp             CEEEEEEGGGEECTTEEECGGGCS-SCEEEEEEEEEESSCBCCSSCCHHHHHHHEEEEEEEEEEECCSBC
T ss_pred             CcEEEEechheecCCCeecCCccC-cccEeeEEEEEECCCCCCCCCCHHHHHHhhceEEEEEEeeccccc
Confidence            677888899999999999999865 699999999999999  5899999999999999999999876653

>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A

Probab=99.49  E-value=3.7e-14  Score=96.22  Aligned_cols=64  Identities=8%  Similarity=-0.003  Sum_probs=56.6

Q ss_pred             ceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCC--CCCCHHhHhh---hcceEEEEEeccccccC
Q psy539            3 QSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRC--KKVNRYDALN---CIAGYCLALDLTEVRHL   70 (70)
Q Consensus         3 ~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~--~~v~~~~A~~---~I~Gy~~~nD~s~Rd~Q   70 (70)
                      |.+|.|   +++++|++|.+|.. .+++||+||++||||.+  +++++++|++   +|++|+..||.+.||+|
T Consensus        81 ~~lf~~---~~~~~g~~i~~p~~-~~~~~E~ELa~vig~~~~g~~vt~~~a~~ai~~v~~~~ei~D~~~~~~~  149 (270)
T 2wqt_A           81 GTLFAD---MCYGDNEIIPFSRV-LQPRIEAEIALVLNRDLPATDITFDELYNAIEWVLPALEVVGSRIRDWS  149 (270)
T ss_dssp             EEEEGG---GEEETTEEECGGGS-SSCEEEEEEEEEESSCBCCTTCCHHHHHTTEEEEEEEEEEECCSBGGGC
T ss_pred             EEEech---heeCCCCeeecCcc-CccceeeEEEEEECCCCCCCCCCHHHHHHhhCeEEEEEEEEcCcccccC
Confidence            445655   79999999999987 47999999999999994  8999999997   88899999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	70
d1hyoa2	298	d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolas	1e-04

>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 298

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (82), Expect = 1e-04
 Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 3/57 (5%)

Query: 12  SMTLARDHHPGIADGSEVHHEVEMGIIISQ---RCKKVNRYDALNCIAGYCLALDLT 65
            M       P       +  E+EM   +       + +    A   I G  L  D +
Sbjct: 61  QMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWS 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	70
d1nr9a_	221	Putative isomerase YcgM {Escherichia coli [TaxId:	99.94
d1sawa_	217	FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [Tax	99.94
d1hyoa2	298	Fumarylacetoacetate hydrolase, FAH, C-terminal dom	99.93
d1gtta2	216	4-hydroxyphenylacetate degradation bifunctional is	99.93
d1gtta1	213	4-hydroxyphenylacetate degradation bifunctional is	99.93
d1nkqa_	257	Hypothetical protein Ynl168c {Baker's yeast (Sacch	99.89
d1sv6a_	261	2-keto-4-pentenoate hydratase MhpD {Escherichia co	97.72

>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Putative isomerase YcgM
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=3.3e-28  Score=160.72  Aligned_cols=69  Identities=28%  Similarity=0.337  Sum_probs=67.0

Q ss_pred             CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      .|.+|+||++++++++++|++|..+..+|||+||++||||.++++++++|++||+||+++||+|+||+|
T Consensus        41 ~P~~F~K~~~al~g~~~~I~~p~~~~~ld~E~EL~vvigk~~~~i~~~~A~~~I~Gyti~ND~T~Rd~q  109 (221)
T d1nr9a_          41 EPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDLTLRDVQ  109 (221)
T ss_dssp             CCCEEEECGGGEEETTSCBCCCSSSSCEEECEEEEEEECSCBSSCCHHHHHHHEEEEEEEECCBCHHHH
T ss_pred             CCEEEEECchhhcCCCcccccccccceeeecccEEEEeccccceeeccccchhhheeeeeeeeeeehhh
Confidence            478999999999999999999999999999999999999999999999999999999999999999987

>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: FAHD1 (Flj36880, YISKL)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-27  Score=157.11  Aligned_cols=69  Identities=23%  Similarity=0.439  Sum_probs=66.9

Q ss_pred             CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      .|.+|+||++++++++++|.+|..++.+|||+||++||||.++++++++|++||+||+++||+|+||+|
T Consensus        34 ~P~~F~K~~~s~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gyti~nDvt~Rd~q  102 (217)
T d1sawa_          34 EPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQ  102 (217)
T ss_dssp             CCCEEEEEGGGEEETTSCEECCTTCSCEEECEEEEEEESSCBCSCCTTTGGGSEEEEEEEECCEEHHHH
T ss_pred             CCeEEecChhhccCCCCceeCCcccceeeeecceEEEeeeeeceeehhhHhhccccceeeeeechhHHH
Confidence            378999999999999999999999999999999999999999999999999999999999999999987

>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.9e-27  Score=161.96  Aligned_cols=68  Identities=15%  Similarity=0.107  Sum_probs=64.0

Q ss_pred             ceEEEcCCCCeecCCCcEecCC--------------CCCceeeceEEEEEECCC---CCCCCHHhHhhhcceEEEEEecc
Q psy539            3 QSTYIDNVNSMTLARDHHPGIA--------------DGSEVHHEVEMGIIISQR---CKKVNRYDALNCIAGYCLALDLT   65 (70)
Q Consensus         3 ~~~f~K~~~~~~~~~~~i~~P~--------------~~~~ld~E~ELavvig~~---~~~v~~~~A~~~I~Gy~~~nD~s   65 (70)
                      |.+|+|+++++++++++|.+|.              .++.+|||+||+|||||.   +|++++++|++||+|||++||||
T Consensus        38 Pv~f~~~~ssivg~g~~I~~P~g~~~~~~~~~p~~~~s~~lDyE~EL~vVIG~~~~~g~~i~~e~A~d~I~Gyti~NDvS  117 (298)
T d1hyoa2          38 PVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWS  117 (298)
T ss_dssp             CCEEECCSTTEEETTCCEECCEEEECSCTTSCCEEEECSCEECBEEEEEEECSCCCTTCCCCHHHHGGGEEEEEEEECCE
T ss_pred             CCEEcCCCCeEECCCCCEeCCCcceecCccCCCccCcccceeeeceEEEEEecccccCccCCHHHHHHHHHHHhhhhhhh
Confidence            7899999999999999999994              378899999999999975   78999999999999999999999


Q ss_pred             ccccC
Q psy539           66 EVRHL   70 (70)
Q Consensus        66 ~Rd~Q   70 (70)
                      +||+|
T Consensus       118 aRd~Q  122 (298)
T d1hyoa2         118 ARDIQ  122 (298)
T ss_dssp             EHHHH
T ss_pred             HHHHH
Confidence            99987

>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=4.8e-27  Score=154.18  Aligned_cols=69  Identities=20%  Similarity=0.315  Sum_probs=67.1

Q ss_pred             CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      .|.+|+||++++++++++|.+|..+..+|||+||++||||.+++++.++|.+||+||+++||+|+||+|
T Consensus        33 ~P~~F~Kp~ssl~g~~~~i~~P~~~~~ld~E~EL~vvigk~~~~i~~~~a~~~I~Gy~i~nD~t~rd~~  101 (216)
T d1gtta2          33 EPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQARNVSEADAMDYVAGYTVCNDYAIRDYL  101 (216)
T ss_dssp             SCCEEEECGGGEECTTEEEEECTTCSCEECCEEEEEEECSCBSSCCTTTGGGGEEEEEEEECCEEGGGC
T ss_pred             CCEEEEEecccccCCCcccccccccceEEeeceEEEEEeccceeecHHHhhhheeeeeccccccchhhh
Confidence            478999999999999999999999999999999999999999999999999999999999999999987

>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.9e-26  Score=151.65  Aligned_cols=67  Identities=24%  Similarity=0.282  Sum_probs=64.1

Q ss_pred             ceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539            3 QSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         3 ~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      |.+|+||++++++++++|.+|.. ..+|||+||+|||||.++++++++|++||+||+++||+|+||+|
T Consensus        35 P~~F~K~~~s~~g~g~~I~~P~~-~~~~~E~ELavVIgk~~~~i~~~~A~~~I~Gyti~nD~T~rd~~  101 (213)
T d1gtta1          35 AVWFIKPRNTVIGCGEPIPFPQG-EKVLSGATVALIVGKTATKVREEDAAEYIAGYALANDVSLPEES  101 (213)
T ss_dssp             CEEEEECGGGEECTTCCEEECTT-CCEECCEEEEEEECSCBSSCCGGGGGGGEEEEEEEECCBSCCCC
T ss_pred             CEEEEcchHHeeCCCCcEEEecc-ceeeeeeeEEEEeecccccchhhhhHHHHHHHHhhhccchHhhh
Confidence            67999999999999999999974 57999999999999999999999999999999999999999987

>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Hypothetical protein Ynl168c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.9e-24  Score=143.73  Aligned_cols=67  Identities=27%  Similarity=0.367  Sum_probs=58.9

Q ss_pred             ceEEEcCCCCeecCCCc-------------------------EecCCCCCceeeceEEEEEECCCCCCCC---HHhHhhh
Q psy539            3 QSTYIDNVNSMTLARDH-------------------------HPGIADGSEVHHEVEMGIIISQRCKKVN---RYDALNC   54 (70)
Q Consensus         3 ~~~f~K~~~~~~~~~~~-------------------------i~~P~~~~~ld~E~ELavvig~~~~~v~---~~~A~~~   54 (70)
                      |.+|+||+++++++++.                         +..|. +.++|||+||||||||.+++++   +++|++|
T Consensus        33 P~~F~Kp~ssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~p~-~~~ld~E~EL~vVIgk~~~~i~~~~~e~A~~~  111 (257)
T d1nkqa_          33 PFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPR-GVKVHHEIELALIVSKHLSNVTKMKPEEVYDS  111 (257)
T ss_dssp             CCEEEECGGGEEBCTTCC------CCSCSCCCCCTTSCCBCCEEECT-TCCEEECEEEEEEECSCBCSCCCCCGGGTGGG
T ss_pred             CEEEEechhheecCCcccccccccccccccccccccccCCCceeCCC-cccceeeEEEEEEEeeccccccchhHHHHHHH
Confidence            78999999999987654                         44454 4579999999999999999986   6999999


Q ss_pred             cceEEEEEeccccccC
Q psy539           55 IAGYCLALDLTEVRHL   70 (70)
Q Consensus        55 I~Gy~~~nD~s~Rd~Q   70 (70)
                      |+||+++||||+||+|
T Consensus       112 V~Gy~i~nD~s~Rd~q  127 (257)
T d1nkqa_         112 ISGVALALDLTARNVQ  127 (257)
T ss_dssp             EEEEEEEECCEEHHHH
T ss_pred             Hhhhhhccccccccch
Confidence            9999999999999987

>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: 2-keto-4-pentenoate hydratase MhpD
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=5.6e-05  Score=48.09  Aligned_cols=61  Identities=13%  Similarity=0.046  Sum_probs=50.7

Q ss_pred             CCCCeecCCCcEecCCCCCceeeceEEEEEECCCC--CCCCHHhHhhhcceEEEEEeccccccC
Q psy539            9 NVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRC--KKVNRYDALNCIAGYCLALDLTEVRHL   70 (70)
Q Consensus         9 ~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~--~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q   70 (70)
                      ..+.+..++..+.++... .+..|+|+++++++..  +..+.+++.++|.++..++++..+.++
T Consensus        83 ~~~~~~~~~~~i~~~~~~-~~~iE~Eiaf~i~~~~~~~~~~~~~v~~~i~~v~~~iEi~~~r~~  145 (261)
T d1sv6a_          83 FADMCYGDNEIIPFSRVL-QPRIEAEIALVLNRDLPATDITFDELYNAIEWVLPALEVVGSRIR  145 (261)
T ss_dssp             EGGGEEETTEEECTTSSS-SCEEEEEEEEEESSCBCCTTCCHHHHHTTEEEEEEEEEEECCSBT
T ss_pred             cCceEEeecccccccccc-ccceeeEEEEEecCccccccccHHHHHHHhhhcccchhcchhhhh
Confidence            455677778888877655 5889999999999995  568889999999999999999877653