Psyllid ID: psy5413

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
SLVSFREYSDSHRQTKIAREVLTLPTPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHccccccEEEEcccccHHHHHccccccccccEEEEEEEEEEEEccccccccHHHHHHHcccccccccccccEEEEEccccccccEEccHHHHHHHHHHHHHccccEEEccccccHHHHHccccEEEEEccccccccccccccccHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccHHHHHHHHHcccccccHccccHHHHHcccccccccccEEEEEccccccccccccEEEEcccHHHccccHHHHHHHHccccccHHHcccHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHcccccEEEEEcccccEEEEEccHHHHHcccEEEEEEccccccccccccccHHHHHHHcccccccccccEEEEEEEccEcccccEcccHHHHHHHHHHHHHHccEEEEEEccHHHHHHHHcccEEEEEccccccccccEEEEEcHHHHHH
Coil and Loop (DISEMBL)
slvsfreysdshrqtkiarevltlptpalvestplsrswsdngnlsipamycwllpvplrlgkvnirtvdirsdtiskptMEMKNYMfncevgddvyledptcKELQEKAAKLAGKeaaifvpsgtmGNLIAIMThcdrrdseiivgdcshimlweqggasqtsVYSQIGRVLMrgvtnqkdgtfdLDEMEAkfstadnihcastslvcventhnycggtvlpMQWLRELKARCqehnipvhmdgarlplaEVCASVDTVMFCLskglgapvgsilagpeefiqk
Flexible Loop (DISEMBL)
slvsfreysdshrqtkiarevltlptpalvestplsrswsdnGNLSIPAMYCWLLPVPLrlgkvnirtvdirsdtiskptmeMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAaifvpsgtmGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEVCASVDTVMFCLSKGlgapvgsilagpeefiqk
Low Complexity Region (SEG)
SLVSFREYSDSHRQTKIAREVLTLPTPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCkelqekaaklagkeaaIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK
Disordered region (IsUnstruct)
********************VLTL***ALV*******SWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEVCASVDTVMFCLSKGLGAPVGSILA********
Disordered Region (DISOPRED)
*LVS****S***************************************************LGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ*
Disordered Region (DISEMBL)
**************TKIAREVLTLPTPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK
Disordered Region (DISPRO)
SLVSFREYSDSHRQTKIAREVLTLPTPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SLVSFREYSDSHRQTKIAREVLTLPTPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
Q21890	413	Uncharacterized protein R	yes	N/A	0.736	0.508	0.449	9e-54
O07051	338	L-allo-threonine aldolase	N/A	N/A	0.733	0.618	0.441	3e-49
P75823	333	Low specificity L-threoni	N/A	N/A	0.722	0.618	0.424	5e-45
P58319	333	Low specificity L-threoni	N/A	N/A	0.722	0.618	0.420	2e-44
O13940	376	Probable low-specificity	yes	N/A	0.726	0.550	0.391	2e-38
P37303	387	Low specificity L-threoni	yes	N/A	0.726	0.534	0.340	1e-28
O13427	374	Low-specificity L-threoni	N/A	N/A	0.726	0.553	0.333	3e-28
Q9UW18	389	Alanine racemase TOXG OS=	N/A	N/A	0.726	0.532	0.311	5e-28
O74267	382	Low-specificity L-threoni	yes	N/A	0.726	0.541	0.340	9e-28
A1JJH3	466	Tryptophanase OS=Yersinia	no	N/A	0.214	0.130	0.382	0.0001

>sp|Q21890|YF64_CAEEL Uncharacterized protein R102.4 OS=Caenorhabditis elegans GN=R102.4 PE=2 SV=3

 Score =  210 bits (534), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 102/227 (44%), Positives = 146/227 (64%), Gaps = 17/227 (7%)

Query: 68  TVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTM 127
           ++D+RSDT++ P++EM+  M    VGDDVY ED T   L+++ A+L GKEA +FV SGTM
Sbjct: 66  SIDLRSDTVTVPSVEMRRAMAEAIVGDDVYGEDTTTNRLEQRCAELFGKEAGLFVTSGTM 125

Query: 128 GNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDL 187
           GNL+AIM HC +R  EIIVG  +HI  WEQG       Y+Q   +    +  + DGT DL
Sbjct: 126 GNLLAIMAHC-QRGEEIIVGRYNHIHRWEQGN------YAQFAGISATTLEVKPDGTMDL 178

Query: 188 DEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGAR 247
           +++E      D  H  ++ L+C+ENTHNY GG  LP++W+R +K   +  ++ VHMDGAR
Sbjct: 179 NDIEQAIRVKD-CHMPASKLICIENTHNYTGGKALPIEWMRSVKQLAERRDLKVHMDGAR 237

Query: 248 L---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
           +          ++++ +  DTV  C SKGLGAPVGSI+ GP++FI +
Sbjct: 238 IYNAAVASNCSVSKIASFADTVQMCFSKGLGAPVGSIVVGPKDFIDR 284

Caenorhabditis elegans (taxid: 6239)

>sp|O07051|LTAA_AERJA L-allo-threonine aldolase OS=Aeromonas jandaei GN=ltaA PE=1 SV=1

 Score =  195 bits (495), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 101/229 (44%), Positives = 143/229 (62%), Gaps = 20/229 (8%)

Query: 66  IRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSG 125
           +R +D+RSDT+++PT  M+  M + EVGDDVY EDP    L+   A L GKEAA+FVPSG
Sbjct: 1   MRYIDLRSDTVTQPTDAMRQCMLHAEVGDDVYGEDPGVNALEAYGADLLGKEAALFVPSG 60

Query: 126 TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTF 185
           TM NL+A+M+HC R +  ++ G  +HI  +E  G+      + +G V ++ V  Q DG+ 
Sbjct: 61  TMSNLLAVMSHCQRGEGAVL-GSAAHIYRYEAQGS------AVLGSVALQPVPMQADGSL 113

Query: 186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDG 245
            L ++ A  +  D++H   T LVC+ENTHN   G VLP+ +LRE++    EH + +H+DG
Sbjct: 114 ALADVRAAIAP-DDVHFTPTRLVCLENTHN---GKVLPLPYLREMRELVDEHGLQLHLDG 169

Query: 246 ARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
           ARL          + E+ A  D+V  CLSKGLGAPVGS+L G   FI +
Sbjct: 170 ARLFNAVVASGHTVRELVAPFDSVSICLSKGLGAPVGSLLVGSHAFIAR 218

Stereospecifically catalyzes the interconversion of L-allo-threonine and glycine.

Aeromonas jandaei (taxid: 650)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: 9

>sp|P75823|LTAE_ECOLI Low specificity L-threonine aldolase OS=Escherichia coli (strain K12) GN=ltaE PE=1 SV=1

 Score =  181 bits (459), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 96/226 (42%), Positives = 141/226 (62%), Gaps = 20/226 (8%)

Query: 69  VDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMG 128
           +D+RSDT+++P+  M   M    VGDDVY +DPT   LQ+ AA+L+GKEAAIF+P+GT  
Sbjct: 2   IDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAAELSGKEAAIFLPTGTQA 61

Query: 129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLD 188
           NL+A+++HC+R + E IVG  +H  L+E GGA      + +G +  + +    DGT  LD
Sbjct: 62  NLVALLSHCERGE-EYIVGQAAHNYLFEAGGA------AVLGSIQPQPIDAAADGTLPLD 114

Query: 189 EMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248
           ++  K    D+IH A T L+ +ENTHN   G VLP ++L+E     +E N+ +H+DGAR+
Sbjct: 115 KVAMKIKP-DDIHFARTKLLSLENTHN---GKVLPREYLKEAWEFTRERNLALHVDGARI 170

Query: 249 ---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
                     L E+    D+   CLSKGLG PVGS+L G  ++I++
Sbjct: 171 FNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKR 216

Catalyzes the cleavage of L-allo-threonine and L-threonine to glycine and acetaldehyde. L-threo-phenylserine and L-erythro-phenylserine are also good substrates.

Escherichia coli (strain K12) (taxid: 83333)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: 8

>sp|P58319|LTAE_ECO57 Low specificity L-threonine aldolase OS=Escherichia coli O157:H7 GN=ltaE PE=3 SV=1

 Score =  179 bits (455), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 95/226 (42%), Positives = 141/226 (62%), Gaps = 20/226 (8%)

Query: 69  VDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMG 128
           +D+RSDT+++P+  M   M    VGDDVY +DPT   LQ+ AA+L+GKEAAIF+P+GT  
Sbjct: 2   IDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAAELSGKEAAIFLPTGTQA 61

Query: 129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLD 188
           NL+A+++HC+R + E IVG  +H  L+E GGA      + +G +  + +    DGT  LD
Sbjct: 62  NLVALLSHCERGE-EYIVGQAAHNYLFEAGGA------AVLGSIQPQPIDAAADGTLPLD 114

Query: 189 EMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248
           ++  K    D+IH A T L+ +ENTHN   G VLP ++L++     +E N+ +H+DGAR+
Sbjct: 115 KVAMKIKP-DDIHFARTKLLSLENTHN---GKVLPREYLKDAWEFTRERNLALHVDGARI 170

Query: 249 ---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
                     L E+    D+   CLSKGLG PVGS+L G  ++I++
Sbjct: 171 FNAVVAYGSELKELTQYCDSFTICLSKGLGTPVGSLLVGNRDYIKR 216

Catalyzes the cleavage of L-allo-threonine and L-threonine to glycine and acetaldehyde. L-threo-phenylserine and L-erythro-phenylserine are also good substrates.

Escherichia coli O157:H7 (taxid: 83334)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: 8

>sp|O13940|GLY1_SCHPO Probable low-specificity L-threonine aldolase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gly1 PE=3 SV=1

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/225 (39%), Positives = 127/225 (56%), Gaps = 18/225 (8%)

Query: 70  DIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGN 129
           D RSDT++ PT EM+  M+    GD VY ED   ++L+   AKL GKEAA+FV SGT GN
Sbjct: 30  DFRSDTLTVPTDEMRRIMYEASDGDCVYEEDEDTRKLEVYVAKLTGKEAALFVTSGTQGN 89

Query: 130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDE 189
            + I +H  +    II  D +HI  WE G      +++Q    ++R ++ + +     +E
Sbjct: 90  QLCIRSHLHQPPHSIICDDRAHIYNWEAGA---IGLFTQ---AIVRPISPKNNVYITAEE 143

Query: 190 MEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL- 248
           +E K    ++IH + T L+C+ENT     G V+P+  +  +    + H IP+H DGARL 
Sbjct: 144 IENKLILGNDIHFSPTGLICLENT---IKGAVVPLDEVARISGLAKAHKIPLHCDGARLW 200

Query: 249 --------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
                    + E C+  D+V  CLSKGL APVGSI+ GP +FI K
Sbjct: 201 DAAVASNVSIKEYCSYFDSVSLCLSKGLAAPVGSIIVGPRDFIAK 245

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: 8

>sp|P37303|GLY1_YEAST Low specificity L-threonine aldolase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GLY1 PE=1 SV=2

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 120/226 (53%), Gaps = 19/226 (8%)

Query: 70  DIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGN 129
           D+RSDT + PT EM        +GD VY ED     L++  A++AGKEA +F  SGT+ N
Sbjct: 16  DLRSDTFTTPTAEMMEAALEASIGDAVYGEDVDTVRLEQTVARMAGKEAGLFCVSGTLSN 75

Query: 130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDE 189
            IAI TH  +    I+    +H+   E  G +  S      + ++  V         L++
Sbjct: 76  QIAIRTHLMQPPYSILCDYRAHVYTHEAAGLAILS------QAMVVPVVPSNGDYLTLED 129

Query: 190 MEAKFSTAD-NIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248
           +++ +   D +IH A T L+ +ENT +   G V P++ L  +KA C E+ + +H DGAR+
Sbjct: 130 IKSHYVPDDGDIHGAPTRLISLENTLH---GIVYPLEELVRIKAWCMENGLKLHCDGARI 186

Query: 249 ---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
                    PL +     D++  CLSK +GAP+GS+L G  +F++K
Sbjct: 187 WNAAAQSGVPLKQYGEIFDSISICLSKSMGAPIGSVLVGNLKFVKK 232

Catalyzes the cleavage of L-allo-threonine and L-threonine to glycine and acetaldehyde.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: 8

>sp|O13427|GLY1_CANAX Low-specificity L-threonine aldolase OS=Candida albicans GN=GLY1 PE=3 SV=1

 Score =  125 bits (314), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 21/228 (9%)

Query: 70  DIRSDTISKPTMEM-KNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMG 128
           + RSDT + PT  M ++   N   GD VY ED T   L+ K  ++ GK AA+F  SGTM 
Sbjct: 14  EFRSDTFTVPTRAMVEDGFMNATFGDSVYQEDETTLRLESKMCEITGKPAALFCVSGTMS 73

Query: 129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLD 188
           N I +  +  +    I+    +H+ L E GG +  S      + ++  V          +
Sbjct: 74  NQIGLRANLVQPPYSILCDYRAHVFLHEAGGLATLS------QAMVHPVRPSNGNYLTFE 127

Query: 189 EMEAKFSTAD--NIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246
           ++    +  D  +IH A T ++ +ENT     G ++P++ +R++   C+E++I +H+DGA
Sbjct: 128 DVLGNVTYDDDGDIHAAPTKVISLENT---LHGIIIPIEEIRKISEFCRENDIRLHLDGA 184

Query: 247 RL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
           RL          + E C+  D+V  CLSK LGAP+GS+L G E+FI+K
Sbjct: 185 RLWNASVATGISIKEYCSYFDSVSLCLSKSLGAPIGSVLVGDEKFIRK 232

Candida albicans (taxid: 5476)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: 8

>sp|Q9UW18|TOXG_COCCA Alanine racemase TOXG OS=Cochliobolus carbonum GN=TOXG PE=3 SV=1

 Score =  124 bits (312), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 18/225 (8%)

Query: 70  DIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGN 129
           D RSD I++P++ M + +    +GDDV+ ED T    +   A+++G+E  +FV +GTM N
Sbjct: 39  DFRSDVITRPSLRMLSAVLKTTLGDDVFREDLTTAHFEAHVAEISGREEGMFVITGTMAN 98

Query: 130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDE 189
            + +      R   I++   SH + +E GG+S  S        +++ V         +++
Sbjct: 99  QLCLHALVSTRPCGILLSSESHAIHYEAGGSSMLS------GAMLQPVQPSNGKYLRVED 152

Query: 190 MEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL- 248
           +E      D++H   TS+V +ENT    GG V+P+  LR ++   +++N+  H+DGARL 
Sbjct: 153 LEEHAILTDDVHKCPTSIVSMENT---AGGAVVPVHELRRIRDWAKQNNVRTHLDGARLF 209

Query: 249 --------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
                    L E C+ +D V    SK LGAP+G+++ G ++ IQ+
Sbjct: 210 EAVATGAGTLKEYCSLIDLVSVDFSKNLGAPMGAMILGDKKLIQQ 254

Essential role in the production of the major forms of HC-toxin, all of which contain D-alanine. The absence of this enzyme reduces pathogenicity of the fungus on maize. Synthesizes D-alanine from L-alanine.

Cochliobolus carbonum (taxid: 5017)

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|O74267|GLY1_ASHGO Low-specificity L-threonine aldolase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=GLY1 PE=3 SV=3

 Score =  124 bits (310), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 118/226 (52%), Gaps = 19/226 (8%)

Query: 70  DIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGN 129
           D RSDT + PT EM        +GD VY ED    +L++  AKLAG EA +F  SGT+ N
Sbjct: 17  DFRSDTFTTPTREMIEAALTATIGDAVYQEDIDTLKLEQHVAKLAGMEAGMFCVSGTLSN 76

Query: 130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDE 189
            IA+ TH  +    I+    +H+   E  G +  S      + ++  V         L++
Sbjct: 77  QIALRTHLTQPPYSILCDYRAHVYTHEAAGLAILS------QAMVTPVIPSNGNYLTLED 130

Query: 190 MEAKFSTAD-NIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248
           ++  +   D +IH A T ++ +ENT     G + P++ L  +KA C E+++ +H DGAR+
Sbjct: 131 IKKHYIPDDGDIHGAPTKVISLENT---LHGIIHPLEELVRIKAWCMENDLRLHCDGARI 187

Query: 249 ---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
                    PL +     D++  CLSK +GAP+GSIL G  +FI+K
Sbjct: 188 WNASAESGVPLKQYGELFDSISICLSKSMGAPMGSILVGSHKFIKK 233

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: 8

>sp|A1JJH3|TNAA_YERE8 Tryptophanase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=tnaA PE=3 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 7/68 (10%)

Query: 183 GTFDLDEMEAKFST--ADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIP 240
           G FDLD+++A  +   ADN+    T++ C     N  GG  + M  +RE+    Q+HNIP
Sbjct: 164 GDFDLDQLKATIAEYGADNVVSIITTVTC-----NSSGGQPISMSNMREVYRIAQQHNIP 218

Query: 241 VHMDGARL 248
           V +D AR 
Sbjct: 219 VVIDSARF 226

Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) (taxid: 393305)

EC: 4

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
157111289	386	l-allo-threonine aldolase [Aedes aegypti	0.750	0.554	0.526	8e-64
328720750	393	PREDICTED: l-allo-threonine aldolase-lik	0.743	0.539	0.530	3e-62
158291946	386	AGAP003688-PA [Anopheles gambiae str. PE	0.750	0.554	0.539	4e-62
332373700	378	unknown [Dendroctonus ponderosae]	0.750	0.566	0.524	2e-61
260798574	360	hypothetical protein BRAFLDRAFT_260210 [	0.729	0.577	0.535	3e-61
427789843	371	Putative threonine aldolase [Rhipicephal	0.747	0.574	0.519	8e-61
312377094	240	hypothetical protein AND_11716 [Anophele	0.750	0.891	0.526	1e-60
170052611	386	L-allo-threonine aldolase [Culex quinque	0.743	0.549	0.526	1e-60
91084465	380	PREDICTED: similar to l-allo-threonine a	0.764	0.573	0.516	2e-60
357612191	370	hypothetical protein KGM_00088 [Danaus p	0.736	0.567	0.513	5e-60

>gi|157111289|ref|XP_001651472.1| l-allo-threonine aldolase [Aedes aegypti] gi|108878466|gb|EAT42691.1| AAEL005819-PA [Aedes aegypti]

 Score =  249 bits (637), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 121/230 (52%), Positives = 159/230 (69%), Gaps = 16/230 (6%)

Query: 65  NIRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPS 124
           ++R VD RSDT+S PT  M+  M+   VGDDVY EDPT  EL+ +AA L GKEAA+FVPS
Sbjct: 15  SVRVVDFRSDTVSVPTATMRKAMYEAAVGDDVYGEDPTVNELERRAAALLGKEAALFVPS 74

Query: 125 GTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGT 184
           GTMGNL+A+M HC+RR SE IVGD +H+ L+EQGG+      +Q+  VL+  + N+ DGT
Sbjct: 75  GTMGNLLAVMVHCNRRGSEAIVGDMAHVFLYEQGGS------AQLAGVLLNNIKNKPDGT 128

Query: 185 FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD 244
           F LDE+  KF   D IH  +T LV +ENTHN CGG VLP+QW+ +L   C+E +I +HMD
Sbjct: 129 FCLDELRNKFRGFD-IHEPNTELVLIENTHNMCGGKVLPLQWMEDLSNICKEKSIKLHMD 187

Query: 245 GAR---------LPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
           GAR         +P++ V   VD+V FCLSK L  PVGS+L G ++FI++
Sbjct: 188 GARVFNAAEHLKVPVSRVVRDVDSVCFCLSKSLACPVGSMLVGSKDFIKQ 237

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720750|ref|XP_003247119.1| PREDICTED: l-allo-threonine aldolase-like isoform 2 [Acyrthosiphon pisum] gi|328720752|ref|XP_003247120.1| PREDICTED: l-allo-threonine aldolase-like isoform 3 [Acyrthosiphon pisum] gi|328720754|ref|XP_001948416.2| PREDICTED: l-allo-threonine aldolase-like isoform 1 [Acyrthosiphon pisum]

 Score =  244 bits (623), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 121/228 (53%), Positives = 156/228 (68%), Gaps = 16/228 (7%)

Query: 68  TVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTM 127
            +D+RSDT++KP + M+  MF+ EVGDD Y EDPT   L+EKA+KL  KEAAIF+PSG M
Sbjct: 23  VIDLRSDTVTKPDVHMRQAMFDAEVGDDGYGEDPTINLLEEKASKLFEKEAAIFLPSGLM 82

Query: 128 GNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDL 187
           GNLIA+M H  +R  E+IVG  SHI+LWEQGGA      SQI  + MR V N  DGT D+
Sbjct: 83  GNLIAMMVHSKQRGGEVIVGHKSHILLWEQGGA------SQIAGLQMREVKNLDDGTLDM 136

Query: 188 DEMEAKFSTA-DNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246
            E+  K      + H   T+LVC+ENTHNYCGGT+LP++W+ +L    +E NIP+HMDGA
Sbjct: 137 TELLGKIRPEFPDPHEPYTTLVCIENTHNYCGGTILPVEWIDQLGKLTKEKNIPLHMDGA 196

Query: 247 R---------LPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
           R         +P++ +    D+V FCLSKGLGAP+GSIL G + FI+K
Sbjct: 197 RVFNAAVGLGVPVSRIVKHCDSVTFCLSKGLGAPIGSILIGEKLFIEK 244

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158291946|ref|XP_313472.4| AGAP003688-PA [Anopheles gambiae str. PEST] gi|157017532|gb|EAA08948.4| AGAP003688-PA [Anopheles gambiae str. PEST]

 Score =  244 bits (622), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 124/230 (53%), Positives = 156/230 (67%), Gaps = 16/230 (6%)

Query: 65  NIRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPS 124
           ++R VD RSDTIS PT  M+  MF   VGDDVY EDPT ++L++++A L GKEAA+FVPS
Sbjct: 16  HVRVVDFRSDTISVPTPSMRQAMFTAVVGDDVYGEDPTVRQLEQRSAALFGKEAALFVPS 75

Query: 125 GTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGT 184
           GTM NL+A+M HC RR +E IVGD +H  L+EQGGA      +QI  VL+  + N  DGT
Sbjct: 76  GTMANLLAMMVHCSRRGTEAIVGDIAHGFLYEQGGA------AQIAGVLLNTIKNNPDGT 129

Query: 185 FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD 244
           F L+E+  KF   D +H  +T LV VENTHN CGG VLP+ WL +L A C+E    VHMD
Sbjct: 130 FCLNELVRKFRGFD-VHEPNTVLVMVENTHNICGGKVLPLDWLEKLAAICREKGAKVHMD 188

Query: 245 GAR---------LPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
           GAR         LP++ +   VD+V FCLSKGL  PVGSIL G +EFI++
Sbjct: 189 GARVFNAASYLNLPVSRIVRDVDSVCFCLSKGLACPVGSILLGTKEFIKE 238

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373700|gb|AEE61991.1| unknown [Dendroctonus ponderosae]

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 120/229 (52%), Positives = 152/229 (66%), Gaps = 15/229 (6%)

Query: 66  IRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSG 125
           IR VD+RSDT+S+PT EM+  M+   VGDDVY EDPT  EL+ +AA+L  KE A+FV SG
Sbjct: 15  IRIVDLRSDTVSRPTPEMREAMYRAAVGDDVYGEDPTVAELETRAAELLDKEQAVFVASG 74

Query: 126 TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTF 185
           TM NLIAIM HC++R SEII GD  H   +EQGG       +QI  V    + N +DGTF
Sbjct: 75  TMANLIAIMVHCNQRGSEIISGDHGHTFKFEQGGT------AQIAGVHTAVIKNNEDGTF 128

Query: 186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDG 245
            +D++  K     + H   +SL+ VENTHN CGG VLP++WL +++   QEHN+PVHMDG
Sbjct: 129 SIDDLRKKIRKNPDFHEPISSLIIVENTHNLCGGKVLPLEWLEKVQNVAQEHNLPVHMDG 188

Query: 246 ARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
           AR+         P + +   VD+V FCLSKGLG PVG+ILAG  EFI K
Sbjct: 189 ARMMNAAVYLKVPPSRIVKDVDSVCFCLSKGLGCPVGAILAGTSEFIAK 237

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260798574|ref|XP_002594275.1| hypothetical protein BRAFLDRAFT_260210 [Branchiostoma floridae] gi|229279508|gb|EEN50286.1| hypothetical protein BRAFLDRAFT_260210 [Branchiostoma floridae]

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 155/224 (69%), Gaps = 16/224 (7%)

Query: 71  IRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNL 130
           +RSDTI+KPT  M+  M   EVGDDVY EDPT   LQEKAAKL G EAA+FVP+GTMGN 
Sbjct: 1   MRSDTITKPTPAMRRAMAEAEVGDDVYGEDPTVNALQEKAAKLFGMEAALFVPTGTMGNF 60

Query: 131 IAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEM 190
            +IM HC  R SE+++GDC+HI ++EQGG+      +Q+G +  R V N+ DGTFDLDE+
Sbjct: 61  CSIMAHCWERGSEMLLGDCAHIFIYEQGGS------AQLGGIHPRTVRNKPDGTFDLDEV 114

Query: 191 EAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-- 248
           E+K  T+D  H   T L+CVENT N CGG VLP+ +L+EL+     H +PVHMDGARL  
Sbjct: 115 ESKVRTSDP-HLPITRLICVENTQNICGGRVLPLSFLKELRELANRHKLPVHMDGARLMN 173

Query: 249 -------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
                  P +++    D+V  CLSKGLGAPVGS++ G ++FI +
Sbjct: 174 AAVSLNVPPSDILQYCDSVSVCLSKGLGAPVGSVIGGKKDFIAR 217

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|427789843|gb|JAA60373.1| Putative threonine aldolase [Rhipicephalus pulchellus]

 Score =  239 bits (611), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 120/231 (51%), Positives = 157/231 (67%), Gaps = 18/231 (7%)

Query: 65  NIRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPS 124
           N R VD+RSDT++KPT EM+  M + EVGDDV+ EDPT  EL+   A+L GKEAA+FVP+
Sbjct: 3   NPRVVDLRSDTLTKPTPEMRQAMRDAEVGDDVFKEDPTVNELERVVAELLGKEAALFVPT 62

Query: 125 GTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQ-TSVYSQIGRVLMRGVTNQKDG 183
           GTMGNL A+M HCD+R  EI+VGD SHI L+EQGG +Q  +V+S         V  QKDG
Sbjct: 63  GTMGNLAAVMAHCDQRGQEILVGDASHIFLFEQGGVAQLAAVHSW-------AVPTQKDG 115

Query: 184 TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHM 243
              L+++E +    D  HC  T+L+C+ENTHN CGGTVLP+ +L E     + H IP+H+
Sbjct: 116 RLLLEDLEFRMRPRD-YHCPKTALLCLENTHNVCGGTVLPVDYLEEAGRFAKTHKIPLHV 174

Query: 244 DGAR---------LPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
           DGAR         LP+ ++    DTVM CLSKGL  P+GS++AGP++FI K
Sbjct: 175 DGARIMNAATYLGLPVKDLLRPCDTVMMCLSKGLACPIGSLVAGPKDFIYK 225

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312377094|gb|EFR24010.1| hypothetical protein AND_11716 [Anopheles darlingi]

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 121/230 (52%), Positives = 151/230 (65%), Gaps = 16/230 (6%)

Query: 65  NIRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPS 124
           N+R VD RSDT+S PT  M+  +F   VGDDVY EDPT ++L++++A L GKEAA+FVPS
Sbjct: 18  NVRVVDFRSDTLSVPTPSMRQAIFEAVVGDDVYGEDPTVRKLEQRSAALFGKEAALFVPS 77

Query: 125 GTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGT 184
           GTM NL+AIM HC RR +E +VGD +H  L+EQGGA      +QI  VL+  + N  DGT
Sbjct: 78  GTMANLLAIMVHCSRRGTEAVVGDMAHGFLYEQGGA------AQIAGVLLSTIRNNPDGT 131

Query: 185 FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD 244
           F L+E+  KF   D +H   T LV VENTHN CGG VLP+ WL  L   C E    VHMD
Sbjct: 132 FCLNELSKKFRGFD-VHEPDTVLVMVENTHNMCGGKVLPLDWLENLYKMCTEKGAKVHMD 190

Query: 245 GAR---------LPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
           GAR         LP++ +   VD+V FCLSKGL  PVGS+L G  EFI++
Sbjct: 191 GARVFNAAAHLNLPVSRIVRDVDSVCFCLSKGLACPVGSVLVGSAEFIKE 240

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170052611|ref|XP_001862301.1| L-allo-threonine aldolase [Culex quinquefasciatus] gi|167873456|gb|EDS36839.1| L-allo-threonine aldolase [Culex quinquefasciatus]

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 120/228 (52%), Positives = 156/228 (68%), Gaps = 16/228 (7%)

Query: 67  RTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGT 126
           R VD RSDT+S PT  M+  ++   VGDDVY EDPT KEL+ ++A+L GKEAA+FVP+GT
Sbjct: 17  RVVDFRSDTVSVPTPSMRKAIYEATVGDDVYGEDPTVKELERRSAELFGKEAALFVPTGT 76

Query: 127 MGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFD 186
           MGNL+A+M HC RR SE IVGD +H+ L+EQGGA      +Q+  VL+  + N+ DGTF 
Sbjct: 77  MGNLLAVMVHCCRRGSEAIVGDAAHVFLYEQGGA------AQLAGVLLHTIKNKPDGTFC 130

Query: 187 LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246
           L E+   F   D +H   T+LV VENTHN CGG VLP+QWL +L   C+ ++  VHMDGA
Sbjct: 131 LKELPNMFRGFD-VHEPITNLVLVENTHNMCGGKVLPLQWLEDLAQICKRNSAKVHMDGA 189

Query: 247 R---------LPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
           R         +P++ V   VD+V FCLSKGL  PVGSIL G ++FI++
Sbjct: 190 RVFNAAEYLGVPVSRVVRDVDSVCFCLSKGLACPVGSILLGTKDFIKQ 237

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91084465|ref|XP_970449.1| PREDICTED: similar to l-allo-threonine aldolase [Tribolium castaneum] gi|270008687|gb|EFA05135.1| hypothetical protein TcasGA2_TC015250 [Tribolium castaneum]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 122/236 (51%), Positives = 153/236 (64%), Gaps = 18/236 (7%)

Query: 62  GKVN---IRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA 118
           G++N   +  VD+RSDTISKPT EM+  M    VGDDV+ EDPT  EL+ ++A+L GKE 
Sbjct: 7   GEINTSAVHVVDLRSDTISKPTPEMREAMATAVVGDDVFGEDPTVAELERRSAELLGKED 66

Query: 119 AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT 178
           A+FV SGTM NLIAIM HC +R SEII GD  H   +EQGG       +QI  V    + 
Sbjct: 67  AVFVASGTMANLIAIMVHCSQRGSEIISGDNGHTFRFEQGGP------AQIAGVQASLIR 120

Query: 179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN 238
           N  DGTF LDE+  +     + H   T+LV +ENTHN CGG VLP+ W+ ++K   +E+N
Sbjct: 121 NNSDGTFSLDELRDRIRKNPDCHEPYTTLVIIENTHNMCGGKVLPLDWIEKVKNISKEYN 180

Query: 239 IPVHMDGAR---------LPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
           IPVHMDGAR         +P+  V   VDTV FCLSKGLGAP+GSILAG + F+ K
Sbjct: 181 IPVHMDGARVMNAAVYLKVPVERVVRDVDTVCFCLSKGLGAPIGSILAGSKTFVDK 236

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357612191|gb|EHJ67858.1| hypothetical protein KGM_00088 [Danaus plexippus]

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 116/226 (51%), Positives = 150/226 (66%), Gaps = 16/226 (7%)

Query: 69  VDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMG 128
           VD+RSDT++KPT  MK+ M N  +GDDV+ EDPT   L+ K A L GK+AA+FVPSGTM 
Sbjct: 5   VDLRSDTVTKPTEAMKHAMVNSALGDDVFGEDPTVNALESKVATLLGKQAALFVPSGTMA 64

Query: 129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLD 188
           NLIAIM HC +R +E IVG+ SHI  +EQGGA      + +  VL+  + N+ DGTFDL+
Sbjct: 65  NLIAIMVHCSKRGAEAIVGNLSHIYKYEQGGA------AHVAGVLLSTIQNKPDGTFDLE 118

Query: 189 EMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248
           E+E +F  +D IH   TS+V +ENTHN CGG V+P++W+ +L A C    +P+H+DGARL
Sbjct: 119 ELEKRFQGSD-IHSPITSMVAIENTHNVCGGKVVPLEWMEQLSAVCVRRGVPLHLDGARL 177

Query: 249 ---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
                    P A V A  D+V  C SKGL AP GS L G   FIQ+
Sbjct: 178 VNAATYLQVPPARVAACCDSVAICFSKGLSAPAGSALVGSYSFIQQ 223

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
ZFIN|ZDB-GENE-040704-14	413	tha1 "threonine aldolase 1" [D	0.747	0.515	0.467	1.6e-45
TAIR|locus:2100860	355	THA2 "threonine aldolase 2" [A	0.750	0.602	0.421	2.1e-45
WB|WBGene00011291	413	R102.4 [Caenorhabditis elegans	0.736	0.508	0.440	5e-44
FB|FBgn0039094	383	CG10184 [Drosophila melanogast	0.736	0.548	0.446	1.7e-43
TAIR|locus:2025645	358	THA1 "threonine aldolase 1" [A	0.750	0.597	0.417	4e-42
TIGR_CMR|CHY_0904	344	CHY_0904 "low-specificity L-th	0.729	0.604	0.426	1.6e-40
TIGR_CMR|GSU_3162	348	GSU_3162 "L-allo-threonine ald	0.715	0.586	0.397	4.3e-38
UNIPROTKB|F1MVX8	397	LOC507443 "Uncharacterized pro	0.768	0.551	0.387	1.1e-37
UNIPROTKB|F1PI34	391	LOC491550 "Uncharacterized pro	0.754	0.549	0.372	5.7e-36
UNIPROTKB|P75823	333	ltaE "LtaE" [Escherichia coli	0.722	0.618	0.380	7.2e-36

ZFIN|ZDB-GENE-040704-14 tha1 "threonine aldolase 1" [Danio rerio (taxid:7955)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 108/231 (46%), Positives = 141/231 (61%)

Query:    66 IRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCXXXXXXXXXXXXXXXXIFVPSG 125
             IRTVD+RSDT++KP   M+  M   EVGDDV+ EDPT                 ++VPSG
Sbjct:    43 IRTVDLRSDTVTKPGAAMRRAMAEAEVGDDVFGEDPTVNELQKIAAEMFGMKAALYVPSG 102

Query:   126 TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTS-VYSQIGRVLMRGVTNQKDGT 184
             TM NLIA+M HC  R  E+I GD SHI ++EQGG++Q + V+S   R L  G     DGT
Sbjct:   103 TMSNLIAVMVHCRERGDEMIAGDLSHIHIYEQGGSAQLAGVHSATLRTL--G-----DGT 155

Query:   185 FDLDEMEAKFSTA-DNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHM 243
             FDLD++ +K      + H   + LVCVENTHN  GG VLP+ +L+EL++   +  + VHM
Sbjct:   156 FDLDQLISKIRHGYPDPHYPRSRLVCVENTHNIQGGRVLPLAFLQELRSVADQFGLAVHM 215

Query:   244 DGARLPLAEVCASVD---------TVMFCLSKGLGAPVGSILAGPEEFIQK 285
             DGAR+  A V   V          +V  CLSKGLGAPVGS+L G ++FIQ+
Sbjct:   216 DGARVMNAAVALGVQPSAILQHCHSVSVCLSKGLGAPVGSMLGGSKDFIQR 266

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2100860 THA2 "threonine aldolase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 97/230 (42%), Positives = 141/230 (61%)

Query:    66 IRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCXXXXXXXXXXXXXXXXIFVPSG 125
             IRTVD+RSDT++KPT  M++ M N EV DDV   DPT                 +FVPSG
Sbjct:     7 IRTVDLRSDTVTKPTESMRSAMANAEVDDDVLGNDPTALRLEKEVAEIAGKEAAMFVPSG 66

Query:   126 TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTF 185
             TMGNLI+++ HCD R SE+I+GD SHI ++E GG S       +G V  R V N++DGT 
Sbjct:    67 TMGNLISVLVHCDERGSEVILGDDSHIHIYENGGVSS------LGGVHPRTVKNEEDGTM 120

Query:   186 DLDEMEAKF-STADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD 244
             ++  +EA   S   ++H   T L+C+ENT   CGG  LP++++ ++    ++H + +H+D
Sbjct:   121 EIGAIEAAVRSPKGDLHHPVTKLICLENTQANCGGRCLPIEYIDKVGELAKKHGLKLHID 180

Query:   245 GARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
             GAR+         P+  +  + D+V  CLSKG+GAPVGS++ G ++FI K
Sbjct:   181 GARIFNASVALGVPVKRIVQAADSVSICLSKGIGAPVGSVIVGSKKFITK 230

GO:0003824 "catalytic activity" evidence=IEA

GO:0004793 "threonine aldolase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006567 "threonine catabolic process" evidence=RCA;IMP

WB|WBGene00011291 R102.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 100/227 (44%), Positives = 135/227 (59%)

Query:    68 TVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCXXXXXXXXXXXXXXXXIFVPSGTM 127
             ++D+RSDT++ P++EM+  M    VGDDVY ED T                 +FV SGTM
Sbjct:    66 SIDLRSDTVTVPSVEMRRAMAEAIVGDDVYGEDTTTNRLEQRCAELFGKEAGLFVTSGTM 125

Query:   128 GNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDL 187
             GNL+AIM HC R + EIIVG  +HI  WEQG       Y+Q   +    +  + DGT DL
Sbjct:   126 GNLLAIMAHCQRGE-EIIVGRYNHIHRWEQGN------YAQFAGISATTLEVKPDGTMDL 178

Query:   188 DEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGAR 247
             +++E      D  H  ++ L+C+ENTHNY GG  LP++W+R +K   +  ++ VHMDGAR
Sbjct:   179 NDIEQAIRVKD-CHMPASKLICIENTHNYTGGKALPIEWMRSVKQLAERRDLKVHMDGAR 237

Query:   248 LPLAEV---C-----AS-VDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
             +  A V   C     AS  DTV  C SKGLGAPVGSI+ GP++FI +
Sbjct:   238 IYNAAVASNCSVSKIASFADTVQMCFSKGLGAPVGSIVVGPKDFIDR 284

GO:0008152 "metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

FB|FBgn0039094 CG10184 [Drosophila melanogaster (taxid:7227)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 104/233 (44%), Positives = 135/233 (57%)

Query:    69 VDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCXXXXXXXXXXXXXXXXIFVPSGTMG 128
             VD+RSDT+S+PT +M+  M    VGDDVY EDPT                 +FVPSGTMG
Sbjct:     7 VDLRSDTVSQPTDKMRARMATAVVGDDVYGEDPTVNELEARTAAIFGKEAGLFVPSGTMG 66

Query:   129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLD 188
             NL+AIM HC RR +E +VGD SHI L+EQGGAS       +  V +  + N++DGTF L 
Sbjct:    67 NLLAIMVHCHRRGTEALVGDLSHIFLYEQGGASH------LAGVQLATLKNEQDGTFSLQ 120

Query:   189 EMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN-------IPV 241
             ++  +    D  H   TSLV VE THN CGG V+P+ +L EL A  ++         I +
Sbjct:   121 DLRRRIRHED-CHEPITSLVVVEQTHNICGGKVVPLAFLDELAALVRQPGVGTGNARIAL 179

Query:   242 HMDGARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
             HMDGAR+          +  +C   D+V  CLSKGL APVGS+L G + FI +
Sbjct:   180 HMDGARVFNAATALGVGVERICRDFDSVSICLSKGLSAPVGSVLVGSKAFISE 232

GO:0004793 "threonine aldolase activity" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

TAIR|locus:2025645 THA1 "threonine aldolase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 96/230 (41%), Positives = 136/230 (59%)

Query:    66 IRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCXXXXXXXXXXXXXXXXIFVPSG 125
             +R+VD+RSDT+++PT  M+  M N EV DDV   DPT                 +FVPSG
Sbjct:     3 MRSVDLRSDTVTRPTDAMREAMCNAEVDDDVLGYDPTARRLEEEMAKMMGKEAALFVPSG 62

Query:   126 TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTF 185
             TMGNLI++M HCD R SE+I+GD  HI ++E GG S       IG V  + V N++DGT 
Sbjct:    63 TMGNLISVMVHCDVRGSEVILGDNCHIHVYENGGIST------IGGVHPKTVKNEEDGTM 116

Query:   186 DLDEMEAKF-STADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD 244
             DL+ +EA       +    ST L+C+ENTH   GG  L +++  ++    + H + +H+D
Sbjct:   117 DLEAIEAAIRDPKGSTFYPSTRLICLENTHANSGGRCLSVEYTEKVGEIAKRHGVKLHID 176

Query:   245 GARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
             GARL         P+ ++  + D+V  CLSKGLGAPVGS++ G + FI+K
Sbjct:   177 GARLFNASIALGVPVHKLVKAADSVQVCLSKGLGAPVGSVIVGSQSFIEK 226

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0004793 "threonine aldolase activity" evidence=IDA

GO:0006567 "threonine catabolic process" evidence=RCA;IMP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TIGR_CMR|CHY_0904 CHY_0904 "low-specificity L-threonine aldolase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 98/230 (42%), Positives = 138/230 (60%)

Query:    66 IRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCXXXXXXXXXXXXXXXXIFVPSG 125
             ++ +D+RSDT++ PT +M+  MF+ EVGDDVY +DPT                 +FVPSG
Sbjct:     1 MKFIDLRSDTVTTPTPKMREAMFSAEVGDDVYGDDPTVRELEELAAQRIGKEAALFVPSG 60

Query:   126 TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGV-TNQKDGT 184
             TMGN +A+MTH  R D E+I+G+  HI  +E G  +  S     G V +RG+ TN   G 
Sbjct:    61 TMGNQLALMTHTQRGD-EVILGEDCHIFKYEVGAPAVLS-----G-VQLRGLKTN--GGM 111

Query:   185 FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD 244
              DL+E++A     D IH   TSL+C+EN   Y  G V+P+ +L +++   + H + +H+D
Sbjct:   112 MDLEEVKAAIRPND-IHMPRTSLICLENA--YSSGEVVPLHYLEKIREIAESHGLKIHLD 168

Query:   245 GARLPLA---------EVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
             GAR+  A         E+    D+VMFCLSKGL APVGSILAG  EF++K
Sbjct:   169 GARIFNAAIYLGVDAREIARYADSVMFCLSKGLSAPVGSILAGSREFVEK 218

GO:0004793 "threonine aldolase activity" evidence=ISS

GO:0006567 "threonine catabolic process" evidence=ISS

TIGR_CMR|GSU_3162 GSU_3162 "L-allo-threonine aldolase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 89/224 (39%), Positives = 125/224 (55%)

Query:    69 VDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCXXXXXXXXXXXXXXXXIFVPSGTMG 128
             +D+RSDT+++P+  M+  M   EVGDDVY EDPT                 +F  SGT  
Sbjct:     4 IDLRSDTVTRPSPAMRAAMAGAEVGDDVYGEDPTVNRLEELGAATLGTEAALFTASGTQA 63

Query:   129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLD 188
             NL+A++ HC RR  E I G  +H   +E GGA+       +G +  + +  + DGT DL 
Sbjct:    64 NLLALLAHC-RRGDEYIAGQTAHCYRYEGGGAAA------LGGIQPQPLEVEPDGTLDLS 116

Query:   189 EMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248
              + A     D++H A T L+C+ENTH    G VLP+ +L   +  C E ++ +HMDGAR+
Sbjct:   117 AVAAAIKP-DDLHFARTRLLCLENTH---AGRVLPLDYLARARRLCNEQSLGLHMDGARI 172

Query:   249 ---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFI 283
                      P+ E+   VD+V  CLSKGLGAPVGS+L G  EF+
Sbjct:   173 FNAAVKLGVPVREIAGHVDSVSVCLSKGLGAPVGSLLCGGREFV 216

GO:0006567 "threonine catabolic process" evidence=ISS

GO:0008732 "L-allo-threonine aldolase activity" evidence=ISS

UNIPROTKB|F1MVX8 LOC507443 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 91/235 (38%), Positives = 131/235 (55%)

Query:    61 LGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCXXXXXXXXXXXXXXXXI 120
             L  V    VD+RSDT++KP   M+  M    VGDD Y EDPT                 +
Sbjct:    30 LAGVPTYVVDLRSDTVTKPGPAMRRAMAEAVVGDDDYGEDPTVRELQATAAELLGVERTL 89

Query:   121 FVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ 180
             FVP+ TM NLI++M HC RR S++++G   H+ ++EQGG +Q      I  V    + + 
Sbjct:    90 FVPTNTMANLISVMCHCRRRGSQLLLGHECHLHVYEQGGVAQ------IAGVHSHPLPDL 143

Query:   181 KDGTFDLDEMEAKFSTA-DNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNI 239
               GT DL E+E   +    + +     L+C+ENTH+  GG VLPM++LR++    Q + +
Sbjct:   144 PHGTLDLAELERLVTRGLGSPYHPVCELICLENTHSSSGGRVLPMEYLRQVHLLAQRYGV 203

Query:   240 PVHMDGARLPLAEVCASV---------DTVMFCLSKGLGAPVGSILAGPEEFIQK 285
              VH+DGARL  A V   V         D+V  C SKGLGAPVG+++ GP++FI++
Sbjct:   204 RVHLDGARLMNAAVALGVPPACIVEHCDSVSLCFSKGLGAPVGALVGGPKDFIEE 258

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

UNIPROTKB|F1PI34 LOC491550 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 86/231 (37%), Positives = 128/231 (55%)

Query:    64 VNIRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCXXXXXXXXXXXXXXXXIFVP 123
             V +  VD+RSDT++KP   M+  M    VGDD Y EDPT                 +FVP
Sbjct:    27 VPVHQVDLRSDTVTKPGPAMRRAMAEAVVGDDDYGEDPTVRELQEKAAKLLGVERTLFVP 86

Query:   124 SGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDG 183
             + TM NLI++M HC RR S++++G   H+ ++EQGG +Q      I  V    + +   G
Sbjct:    87 TNTMANLISVMGHCQRRGSQLLLGQECHLHVYEQGGVAQ------IAGVHSHPLPDLPHG 140

Query:   184 TFDLDEMEAKFSTA-DNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVH 242
             T DL ++E   +    + +     L+C+ENTH+  GG VLP+ +L ++    + + + VH
Sbjct:   141 TLDLADLERMVTRGLGSPYHPVCELICLENTHSSSGGRVLPIDYLHQVHRLARSYGVRVH 200

Query:   243 MDGARLPLAEVCASV---------DTVMFCLSKGLGAPVGSILAGPEEFIQ 284
             +DGARL  A V   V         D+V  C SKGLGAPVG+++ GP++FI+
Sbjct:   201 LDGARLMNAAVALRVSPARIVEHCDSVSLCFSKGLGAPVGALVGGPKDFIE 251

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

UNIPROTKB|P75823 ltaE "LtaE" [Escherichia coli K-12 (taxid:83333)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 86/226 (38%), Positives = 128/226 (56%)

Query:    69 VDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCXXXXXXXXXXXXXXXXIFVPSGTMG 128
             +D+RSDT+++P+  M   M    VGDDVY +DPT                 IF+P+GT  
Sbjct:     2 IDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAAELSGKEAAIFLPTGTQA 61

Query:   129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLD 188
             NL+A+++HC+R + E IVG  +H  L+E GGA+       +G +  + +    DGT  LD
Sbjct:    62 NLVALLSHCERGE-EYIVGQAAHNYLFEAGGAAV------LGSIQPQPIDAAADGTLPLD 114

Query:   189 EMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248
             ++  K    D+IH A T L+ +ENTHN   G VLP ++L+E     +E N+ +H+DGAR+
Sbjct:   115 KVAMKIKP-DDIHFARTKLLSLENTHN---GKVLPREYLKEAWEFTRERNLALHVDGARI 170

Query:   249 ---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
                       L E+    D+   CLSKGLG PVGS+L G  ++I++
Sbjct:   171 FNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKR 216

GO:0042802 "identical protein binding" evidence=IPI

GO:0030170 "pyridoxal phosphate binding" evidence=IEA;IDA

GO:0008732 "L-allo-threonine aldolase activity" evidence=IDA

GO:0050179 "phenylserine aldolase activity" evidence=IDA

GO:0006545 "glycine biosynthetic process" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.1.2	LOW CONFIDENCE prediction!
4th Layer	4.1.2.5	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	285
PLN02721	353	PLN02721, PLN02721, threonine aldolase	1e-91
pfam01212	288	pfam01212, Beta_elim_lyase, Beta-eliminating lyase	5e-88
cd06502	338	cd06502, TA_like, Low-specificity threonine aldola	5e-73
COG2008	342	COG2008, GLY1, Threonine aldolase [Amino acid tran	5e-71
PRK10534	333	PRK10534, PRK10534, L-threonine aldolase; Provisio	9e-66
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	1e-14
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	7e-08
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	2e-06
cd06454	349	cd06454, KBL_like, KBL_like; this family belongs t	4e-05
PRK13238	460	PRK13238, tnaA, tryptophanase/L-cysteine desulfhyd	5e-05
pfam00266	370	pfam00266, Aminotran_5, Aminotransferase class-V	7e-05
cd06450	345	cd06450, DOPA_deC_like, DOPA decarboxylase family	0.001
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	0.001
cd00617	431	cd00617, Tnase_like, Tryptophanase family (Tnase)	0.002
TIGR01979	403	TIGR01979, sufS, cysteine desulfurases, SufSfamily	0.002
TIGR02617	467	TIGR02617, tnaA_trp_ase, tryptophanase, leader pep	0.003

>gnl|CDD|178323 PLN02721, PLN02721, threonine aldolase

 Score =  275 bits (704), Expect = 1e-91
 Identities = 110/228 (48%), Positives = 146/228 (64%), Gaps = 15/228 (6%)

Query: 67  RTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGT 126
           R VD+RSDT++KPT  M+  M N EV DDV   DPT   L+E+ AK+ GKEAA+FVPSGT
Sbjct: 6   RVVDLRSDTVTKPTDAMRAAMANAEVDDDVLGYDPTALRLEEEMAKIFGKEAALFVPSGT 65

Query: 127 MGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFD 186
           MGNLI+++ HCD R SE+I+GD SHI L+E GG       S +G V  R V N +DGT D
Sbjct: 66  MGNLISVLVHCDVRGSEVILGDNSHIHLYENGGI------STLGGVHPRTVKNNEDGTMD 119

Query: 187 LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246
           LD +EA      + H  +T L+C+ENTH  CGG  L +++  ++    + H + +H+DGA
Sbjct: 120 LDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGA 179

Query: 247 RLPLAEVCASV---------DTVMFCLSKGLGAPVGSILAGPEEFIQK 285
           R+  A V   V         D+V  CLSKGLGAPVGS++ G + FI+K
Sbjct: 180 RIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVGSVIVGSKSFIRK 227

Length = 353

>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase

 Score =  263 bits (675), Expect = 5e-88
 Identities = 98/225 (43%), Positives = 139/225 (61%), Gaps = 16/225 (7%)

Query: 70  DIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGN 129
           D+RSDT++ PT  M+  M    VGD+VY  DPT   L+++ A+L GKEAA+FVPSGTM N
Sbjct: 1   DLRSDTVTGPTPAMREAMAAAMVGDEVYGGDPTVNRLEDRVAELFGKEAALFVPSGTMAN 60

Query: 130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDE 189
            +A+M HC RR  E+I G+ +HI   E GG       +++G      +   + G  DL++
Sbjct: 61  QLALMAHC-RRGDEVICGEPAHIYFDETGGH------AELGGAQPVPLPGAEAGKLDLED 113

Query: 190 MEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL- 248
           +EA      +IH   T L+ +ENTHN  GG V+ ++ LRE++A  +EH IP+H+DGARL 
Sbjct: 114 LEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSLEELREIRAIAREHGIPLHLDGARLA 173

Query: 249 --------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
                    + E+ +  D+V   LSKGLGAPVGS+LAG ++FI  
Sbjct: 174 NAAVALGVIVKEITSYADSVSMSLSKGLGAPVGSVLAGSDDFIAY 218

Length = 288

>gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA)

 Score =  226 bits (579), Expect = 5e-73
 Identities = 90/225 (40%), Positives = 127/225 (56%), Gaps = 19/225 (8%)

Query: 70  DIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGN 129
           D RSDT++ PT EM   M    VGDDVY EDPT  +L+ +AA+L GKEAA+FVPSGT  N
Sbjct: 1   DFRSDTVTGPTPEMLEAMAAANVGDDVYGEDPTTAKLEARAAELFGKEAALFVPSGTAAN 60

Query: 130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDE 189
            +A+  H       +I  + +HI   E G        S +  + + G    ++G    ++
Sbjct: 61  QLALAAHTQPGG-SVICHETAHIYTDEAGAP---EFLSGVKLLPVPG----ENGKLTPED 112

Query: 190 MEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL- 248
           +EA     D+IH    SLV +ENT    GGTV P+  L+ + A  +E+ +P+H+DGARL 
Sbjct: 113 LEAAIRPRDDIHFPPPSLVSLENTTE--GGTVYPLDELKAISALAKENGLPLHLDGARLA 170

Query: 249 --------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
                    L    + VD+V FCLSKG GAPVG+++ G  +FI +
Sbjct: 171 NAAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNRDFIAR 215

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. Length = 338

>gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism]

 Score =  222 bits (567), Expect = 5e-71
 Identities = 88/228 (38%), Positives = 126/228 (55%), Gaps = 19/228 (8%)

Query: 68  TVDIRSDTISKPTMEMKNYMFNCE-VGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGT 126
            +D RSD ++ PT EM+  +     VGDDVY EDPT   L+++ A+L GKEAA+FVPSGT
Sbjct: 1   MIDFRSDNVAGPTPEMREALAAANAVGDDVYGEDPTTNALEQRIAELFGKEAALFVPSGT 60

Query: 127 MGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFD 186
             N +A+  HC +    +I  + +HI   E G       +    ++    +    DG   
Sbjct: 61  QANQLALAAHC-QPGESVICHETAHIYTDECGAP---EFFGGGQKLP---IVPGADGKLT 113

Query: 187 LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246
            +++EA     D  H A T L  +ENT    GGTV P+  L  + A C+EH +P+HMDGA
Sbjct: 114 PEDVEAAIRPDDIHH-APTPLAVLENTATE-GGTVYPLDELEAISAVCKEHGLPLHMDGA 171

Query: 247 RL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
           RL          L  + + VD+V FCL+KG GAPVG+I+ G  +F ++
Sbjct: 172 RLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNRDFAKR 219

Length = 342

>gnl|CDD|236710 PRK10534, PRK10534, L-threonine aldolase; Provisional

 Score =  208 bits (530), Expect = 9e-66
 Identities = 95/226 (42%), Positives = 142/226 (62%), Gaps = 20/226 (8%)

Query: 69  VDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMG 128
           +D+RSDT+++P+  M   M    VGDDVY +DPT   LQ+ AA+L+GKEAA+F+P+GT  
Sbjct: 2   IDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAAELSGKEAALFLPTGTQA 61

Query: 129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLD 188
           NL+A+++HC+R + E IVG  +H  L+E GGA      + +G +  + +    DGT  LD
Sbjct: 62  NLVALLSHCERGE-EYIVGQAAHNYLYEAGGA------AVLGSIQPQPIDAAADGTLPLD 114

Query: 189 EMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248
           ++ AK    D+IH A T L+ +ENTHN   G VLP ++L++     +E N+ +H+DGAR+
Sbjct: 115 KVAAKIK-PDDIHFARTRLLSLENTHN---GKVLPREYLKQAWEFTRERNLALHVDGARI 170

Query: 249 ---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
                     L E+    D+   CLSKGLG PVGS+L G  ++I++
Sbjct: 171 FNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKR 216

Length = 333

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 32/187 (17%)

Query: 104 KELQEKAAKLA--GKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLW---EQG 158
           +EL+EK A+L   G + A+FVPSGT  N  A++      D  I+  +      W   E  
Sbjct: 3   EELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELA 62

Query: 159 GASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCG 218
           GA           V +  V +   G  D+  +E      +     + +L+ +       G
Sbjct: 63  GA---------KPVPVP-VDDAGYGGLDVAILE------ELKAKPNVALIVITPNTTSGG 106

Query: 219 GTVLPMQWLRELKARCQEHNIPVHMDGARL----PLAEVCASV---DTVMFCLSKGLGAP 271
             V      +E++   +E+ I + +D A      P   V       D V F L K LG  
Sbjct: 107 VLVPL----KEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGGE 162

Query: 272 VGSILAG 278
            G ++  
Sbjct: 163 GGGVVIV 169

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 38/197 (19%)

Query: 105 ELQEKAAKLAGKEAA---IFVPSGTMG-NLIA-IMTHCDRRDSEIIVGDCSH---IMLWE 156
             +E  A+    +++   +F    T   NL+A  +    +   EI+V D  H   I+ W+
Sbjct: 70  AAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQ 129

Query: 157 QGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVC---VENT 213
           +          + G  + R +    DG  DLD +E   +         T LV    V N 
Sbjct: 130 ELAK-------RTGAKV-RVIPLDDDGLLDLDALEKLITP-------KTKLVALSHVSNV 174

Query: 214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGAR----LPLAEVCASVDTVMFCLSKGLG 269
                GTV P   ++E+     EH   V +D A+    LP+       D + F   K L 
Sbjct: 175 T----GTVNP---VKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLL 227

Query: 270 APVGS-ILAGPEEFIQK 285
            P G  +L   +E +++
Sbjct: 228 GPTGIGVLYVRKELLEE 244

Length = 405

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 46/202 (22%), Positives = 71/202 (35%), Gaps = 44/202 (21%)

Query: 104 KELQEKAAKLAG--------KEAAIFVPSGTMGNLIAIMT--HCDRRDSEIIVGD---CS 150
            EL+E  AK  G        +EAA+   SG   N+ A++     +     I+V      S
Sbjct: 44  PELREALAKFLGRSPVLKLDREAAVVFGSGAGANIEALIFLLRLNP-GDAILVPAPTYPS 102

Query: 151 HIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCV 210
           +I ++           +    V    + +  D   D D +EA    A         +V  
Sbjct: 103 YIRIFR---------LAGGEVVRYP-LYSSNDFHLDFDALEAALKEA----TEGNKVVLH 148

Query: 211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPV-----HMDGAR--LPLAEVCASVDT---- 259
            + HN  G TV  ++ L +L    +EHNI +     +       L      A +      
Sbjct: 149 TSPHNPTG-TVATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSLDAVATRALLAEGPNL 207

Query: 260 -VMFCLSKGLGAP---VGSILA 277
            V+   SK  G     VG IL 
Sbjct: 208 LVVGSFSKAFGLAGWRVGYILG 229

Length = 357

>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 42/200 (21%), Positives = 78/200 (39%), Gaps = 40/200 (20%)

Query: 100 DPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGD-CSHIMLWE-- 156
               +EL+E+ A+  GKEAA+   SG   N   + T   + D  +I+ D  +H  + +  
Sbjct: 45  SDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTLAGKGD--LIISDSLNHASIIDGI 102

Query: 157 QGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNY 216
           +   ++  ++            N      D++++E      +        L+  E  ++ 
Sbjct: 103 RLSGAKKRIFKH----------N------DMEDLEKLL--REARRPYGKKLIVTEGVYSM 144

Query: 217 CGGTVLPMQWLRELKARCQEHNIPVHMD-----------GARLPLAE-VCASVDTVMFCL 264
             G + P   L EL    +++   + +D           G  +     +   VD +M  L
Sbjct: 145 D-GDIAP---LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTL 200

Query: 265 SKGLGAPVGSILAGPEEFIQ 284
            K  GA VG  +AG +E I 
Sbjct: 201 GKAFGA-VGGYIAGSKELID 219

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. Length = 349

>gnl|CDD|237314 PRK13238, tnaA, tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 183 GTFDLDEMEAKFST--ADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIP 240
           G FDL+++EA      A+N+       + +  T+N  GG  + M  LR +    +++ IP
Sbjct: 159 GNFDLEKLEALIEEVGAENV-----PFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIP 213

Query: 241 VHMDGARLPLAE 252
           V +D AR   AE
Sbjct: 214 VVIDAAR--FAE 223

Length = 460

>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 36/151 (23%), Positives = 55/151 (36%), Gaps = 35/151 (23%)

Query: 108 EKAAKLAGKEAA---IFVPSGTMG-NLIAI--MTHCDRRDSEIIVGDCSH---IMLWEQG 158
           EK A+     +    IF    T   NL+AI         D EI+V +  H   ++ W++ 
Sbjct: 50  EKVAEFINAPSDEEIIFTSGTTEAINLVAISLGRSLKPGD-EILVTEMEHHANLVPWQEL 108

Query: 159 GASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVC---VENTHN 215
                          +R +    +G  DLD +E   +         T LV    V N   
Sbjct: 109 AKRTG--------ATVRVIPVDPNGLLDLDALEKLLTP-------RTKLVAITHVSNVT- 152

Query: 216 YCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246
              GTV P++   E+     E+   V +D A
Sbjct: 153 ---GTVNPVE---EIGKLAHEYGALVVVDAA 177

This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370

>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 41/187 (21%), Positives = 70/187 (37%), Gaps = 37/187 (19%)

Query: 81  MEMKNYMFNCEVGDDVYLEDPTCKELQEK----AAKL--AGKEAA--IFVPSGTMGNLIA 132
           +EM     N    D  + E P   E++ +     AKL     E A  +F   G+  NL+A
Sbjct: 16  LEMLTSAKNAI--DFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLA 73

Query: 133 IMTHCDR-------------RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN 179
           ++   DR                 I+  D +H+   E+  A           V +R V  
Sbjct: 74  LLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVS-VEKAAA--------YLDVKVRLVPV 124

Query: 180 QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNI 239
            +DG  D + +EA              +V    T +   G + P   L E+    +++++
Sbjct: 125 DEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDT--GAIDP---LEEIADLAEKYDL 179

Query: 240 PVHMDGA 246
            +H+D A
Sbjct: 180 WLHVDAA 186

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 44/211 (20%), Positives = 78/211 (36%), Gaps = 38/211 (18%)

Query: 97  YLEDPTCKELQEKAAKLAGK--------EAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGD 148
           Y  DP   EL+E  A+  G+        E  +          + +    +  D E++V D
Sbjct: 32  YYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGD-EVLVPD 90

Query: 149 CSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLV 208
            ++            +     G  +   V   ++G F LD    + +         T L+
Sbjct: 91  PTYPGY--------EAAARLAGAEV-VPVPLDEEGGFLLDLELLEAAKTPK-----TKLL 136

Query: 209 CVENTHNYCGGTVLPMQWLRELKARCQEHNIPV---------HMDGARLPLAEVCASVDT 259
            + N +N  G  VL  + L EL    ++H I +           DG   P   +  + + 
Sbjct: 137 YLNNPNNPTG-AVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYER 195

Query: 260 VMFC--LSKGLGAP---VGSILAGPEEFIQK 285
           V+     SK  G P   +G ++A PEE +++
Sbjct: 196 VIVLRSFSKTFGLPGLRIGYLIAPPEELLER 226

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|99741 cd00617, Tnase_like, Tryptophanase family (Tnase)

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 183 GTFDLDEMEAKFS--TADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIP 240
           G  D+ ++E       A+NI       + +  T+N  GG  + M  LRE++    ++ IP
Sbjct: 134 GNIDVAKLEKLIDEVGAENI-----PYIVLTITNNTAGGQPVSMANLREVRELAHKYGIP 188

Query: 241 VHMDGAR 247
           V +D AR
Sbjct: 189 VVLDAAR 195

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. Length = 431

>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 36/193 (18%)

Query: 108 EKAAKLAGKEAA---IFVPSGTMG-NLIAI---MTHCDRRDSEIIVGDCSH---IMLWEQ 157
           EK AK     +    +F    T   NL+A     ++  +   EI++ +  H   I+ W+ 
Sbjct: 69  EKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSN-LKAGDEIVISEMEHHANIVPWQL 127

Query: 158 GGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYC 217
              ++ +     G  L + +    DGT DLD++E   +         T LV + +  N  
Sbjct: 128 --LAERT-----GATL-KFIPLDDDGTLDLDDLEKLLT-------EKTKLVAITHVSNVL 172

Query: 218 GGTVLPMQWLRELKARCQEHNIPVHMDGAR----LPLAEVCASVDTVMFCLSKGLGAPVG 273
            GTV P++   E+     +    V +DGA+    +P+       D  +F   K  G P G
Sbjct: 173 -GTVNPVE---EIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYG-PTG 227

Query: 274 -SILAGPEEFIQK 285
             +L G EE +++
Sbjct: 228 IGVLYGKEELLEQ 240

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403

>gnl|CDD|131666 TIGR02617, tnaA_trp_ase, tryptophanase, leader peptide-associated

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 41/181 (22%), Positives = 69/181 (38%), Gaps = 21/181 (11%)

Query: 80  TMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDR 139
           T  M+  M     GD+ Y    +   L E    + G +  I    G     I I     +
Sbjct: 56  TQSMQAAMM---RGDEAYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKK 112

Query: 140 RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK----------DGTFDLDE 189
           R+ E  + D S ++ +       T  +SQI     R V  ++           G FDL+ 
Sbjct: 113 REQEKGL-DRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEG 171

Query: 190 MEAKFST--ADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGAR 247
           +E        +N+     ++ C     N  GG  + +  L+ +    ++++IPV MD AR
Sbjct: 172 LERGIEEVGPNNVPYIVATITC-----NSAGGQPVSLANLKAVYEIAKKYDIPVVMDSAR 226

Query: 248 L 248
            
Sbjct: 227 F 227

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream [Energy metabolism, Amino acids and amines]. Length = 467

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
KOG1368|consensus	384		100.0
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.98
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.98
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.96
PLN02721	353	threonine aldolase	99.95
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.94
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.94
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.93
PRK10534	333	L-threonine aldolase; Provisional	99.92
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.92
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.91
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.91
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.9
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.9
KOG0257|consensus	420		99.9
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.9
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.9
KOG1401|consensus	433		99.9
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.9
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.9
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.89
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.89
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.89
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.89
PRK07482	461	hypothetical protein; Provisional	99.89
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.89
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.89
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.89
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.88
PRK08960	387	hypothetical protein; Provisional	99.88
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.88
PRK07179	407	hypothetical protein; Provisional	99.88
PRK05965	459	hypothetical protein; Provisional	99.88
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.88
PRK06207	405	aspartate aminotransferase; Provisional	99.88
PRK07681	399	aspartate aminotransferase; Provisional	99.88
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.88
PLN00175	413	aminotransferase family protein; Provisional	99.88
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.88
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.88
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.88
PLN02242	418	methionine gamma-lyase	99.88
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.88
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.88
PRK08068	389	transaminase; Reviewed	99.88
PRK06767	386	methionine gamma-lyase; Provisional	99.88
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.88
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.87
PRK06062	451	hypothetical protein; Provisional	99.87
PLN02624	474	ornithine-delta-aminotransferase	99.87
PRK06225	380	aspartate aminotransferase; Provisional	99.87
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.87
PRK12403	460	putative aminotransferase; Provisional	99.87
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.87
PRK05942	394	aspartate aminotransferase; Provisional	99.87
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.87
PLN02656	409	tyrosine transaminase	99.87
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.87
PLN00144	382	acetylornithine transaminase	99.87
PLN02822	481	serine palmitoyltransferase	99.87
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.87
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.87
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.87
PRK07483	443	hypothetical protein; Provisional	99.87
PRK12414	384	putative aminotransferase; Provisional	99.87
PRK07046	453	aminotransferase; Validated	99.87
PLN02187	462	rooty/superroot1	99.87
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.87
PRK13392	410	5-aminolevulinate synthase; Provisional	99.87
PRK13237	460	tyrosine phenol-lyase; Provisional	99.87
PRK07324	373	transaminase; Validated	99.87
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.87
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.87
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.87
PRK09064	407	5-aminolevulinate synthase; Validated	99.87
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.87
PRK06290	410	aspartate aminotransferase; Provisional	99.87
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.86
PRK08361	391	aspartate aminotransferase; Provisional	99.86
PTZ00433	412	tyrosine aminotransferase; Provisional	99.86
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.86
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.86
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.86
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.86
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.86
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.86
PRK07337	388	aminotransferase; Validated	99.86
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.86
PRK07481	449	hypothetical protein; Provisional	99.86
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.86
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.86
PRK08363	398	alanine aminotransferase; Validated	99.86
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.86
PRK07682	378	hypothetical protein; Validated	99.86
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.86
PRK07678	451	aminotransferase; Validated	99.86
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.86
PRK08636	403	aspartate aminotransferase; Provisional	99.86
PRK13393	406	5-aminolevulinate synthase; Provisional	99.86
PRK06348	384	aspartate aminotransferase; Provisional	99.86
PRK06108	382	aspartate aminotransferase; Provisional	99.86
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.86
PRK07503	403	methionine gamma-lyase; Provisional	99.86
PRK07480	456	putative aminotransferase; Validated	99.86
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.86
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.86
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.86
PRK06541	460	hypothetical protein; Provisional	99.86
PRK09028	394	cystathionine beta-lyase; Provisional	99.86
PRK05764	393	aspartate aminotransferase; Provisional	99.86
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.86
PRK09265	404	aminotransferase AlaT; Validated	99.86
PRK08912	387	hypothetical protein; Provisional	99.86
PRK07683	387	aminotransferase A; Validated	99.86
PRK06105	460	aminotransferase; Provisional	99.85
PLN02955	476	8-amino-7-oxononanoate synthase	99.85
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.85
PLN02368	407	alanine transaminase	99.85
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.85
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.85
PRK09105	370	putative aminotransferase; Provisional	99.85
KOG1549|consensus	428		99.85
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.85
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.85
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.85
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.85
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.85
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.85
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.85
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.85
PRK07777	387	aminotransferase; Validated	99.85
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.85
PRK07550	386	hypothetical protein; Provisional	99.85
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.85
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.85
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.85
KOG0259|consensus	447		99.85
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.85
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.85
PRK06234	400	methionine gamma-lyase; Provisional	99.85
PRK07050	394	cystathionine beta-lyase; Provisional	99.85
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.85
PRK05957	389	aspartate aminotransferase; Provisional	99.85
PRK08574	385	cystathionine gamma-synthase; Provisional	99.85
PLN02651	364	cysteine desulfurase	99.85
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.85
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.85
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.85
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.85
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.85
PRK09082	386	methionine aminotransferase; Validated	99.85
PRK07568	397	aspartate aminotransferase; Provisional	99.84
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.84
PRK09148	405	aminotransferase; Validated	99.84
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.84
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.84
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.84
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.84
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.84
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.84
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.84
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.84
PRK07036	466	hypothetical protein; Provisional	99.84
PLN02483	489	serine palmitoyltransferase	99.84
PRK08249	398	cystathionine gamma-synthase; Provisional	99.84
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.84
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.84
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.84
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.84
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.84
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.84
PRK14012	404	cysteine desulfurase; Provisional	99.84
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.84
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.84
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.84
PTZ00377	481	alanine aminotransferase; Provisional	99.84
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.84
PRK06836	394	aspartate aminotransferase; Provisional	99.84
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.84
PRK02627	396	acetylornithine aminotransferase; Provisional	99.84
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.83
PRK09275	527	aspartate aminotransferase; Provisional	99.83
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.83
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.83
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.83
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.83
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.83
PRK08175	395	aminotransferase; Validated	99.83
PRK08861	388	cystathionine gamma-synthase; Provisional	99.83
PRK02948	381	cysteine desulfurase; Provisional	99.83
PRK08114	395	cystathionine beta-lyase; Provisional	99.83
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.83
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.83
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.83
PRK05939	397	hypothetical protein; Provisional	99.83
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.83
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.83
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.83
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.83
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.83
PRK06917	447	hypothetical protein; Provisional	99.83
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.83
PRK05839	374	hypothetical protein; Provisional	99.83
PRK07811	388	cystathionine gamma-synthase; Provisional	99.83
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.83
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.83
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.83
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.83
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.83
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.82
KOG1404|consensus	442		99.82
PRK08297	443	L-lysine aminotransferase; Provisional	99.82
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.82
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.82
PLN02231	534	alanine transaminase	99.82
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.82
PRK06855	433	aminotransferase; Validated	99.82
PRK06460	376	hypothetical protein; Provisional	99.82
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.82
PRK06148	1013	hypothetical protein; Provisional	99.82
PRK03321	352	putative aminotransferase; Provisional	99.82
PRK05968	389	hypothetical protein; Provisional	99.82
PRK08045	386	cystathionine gamma-synthase; Provisional	99.82
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.82
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.81
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.81
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.81
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.81
PRK06107	402	aspartate aminotransferase; Provisional	99.81
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.81
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.81
PLN02409	401	serine--glyoxylate aminotransaminase	99.81
PRK07671	377	cystathionine beta-lyase; Provisional	99.81
KOG1402|consensus	427		99.81
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.81
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.81
PRK05967	395	cystathionine beta-lyase; Provisional	99.81
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.81
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.81
PRK08776	405	cystathionine gamma-synthase; Provisional	99.81
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.81
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.81
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.81
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.81
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.81
PRK06149	972	hypothetical protein; Provisional	99.81
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.81
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.8
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.8
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.8
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.8
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.8
PRK04311	464	selenocysteine synthase; Provisional	99.8
PRK07505	402	hypothetical protein; Provisional	99.8
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.8
PRK04260	375	acetylornithine aminotransferase; Provisional	99.8
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.8
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.8
PLN02590	539	probable tyrosine decarboxylase	99.8
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.8
PRK08064	390	cystathionine beta-lyase; Provisional	99.8
PTZ00376	404	aspartate aminotransferase; Provisional	99.8
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.8
PRK07049	427	methionine gamma-lyase; Validated	99.8
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.8
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.8
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.79
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.79
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.79
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.79
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.79
PRK08354	311	putative aminotransferase; Provisional	99.79
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.79
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.79
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.79
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.79
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.78
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.78
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.78
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.78
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.78
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.78
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.77
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.77
PLN02880	490	tyrosine decarboxylase	99.77
PLN02509	464	cystathionine beta-lyase	99.77
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.77
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.77
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.77
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.77
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.77
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.77
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.77
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.76
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.76
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.76
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.76
PLN02672	1082	methionine S-methyltransferase	99.76
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.76
PRK02769	380	histidine decarboxylase; Provisional	99.76
PLN03032	374	serine decarboxylase; Provisional	99.75
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.75
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.75
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.75
PLN02397	423	aspartate transaminase	99.75
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.74
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.74
PRK07908	349	hypothetical protein; Provisional	99.74
PRK07582	366	cystathionine gamma-lyase; Validated	99.74
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.74
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.74
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.74
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.74
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.73
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.73
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.73
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.73
KOG0053|consensus	409		99.72
PRK08637	388	hypothetical protein; Provisional	99.72
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.72
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.71
PLN02271	586	serine hydroxymethyltransferase	99.7
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.7
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.7
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.69
KOG1360|consensus	570		99.69
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.69
KOG1359|consensus	417		99.69
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.69
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.69
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.69
PLN02263	470	serine decarboxylase	99.68
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.67
PRK06434	384	cystathionine gamma-lyase; Validated	99.67
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.67
KOG0628|consensus	511		99.67
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.67
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.66
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.65
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.63
PRK05367	954	glycine dehydrogenase; Provisional	99.63
PRK12566	954	glycine dehydrogenase; Provisional	99.62
KOG0256|consensus	471		99.62
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.61
KOG1403|consensus	452		99.59
PRK15029	755	arginine decarboxylase; Provisional	99.58
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.54
PLN02724	805	Molybdenum cofactor sulfurase	99.53
KOG1357|consensus	519		99.52
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	99.5
PRK03080	378	phosphoserine aminotransferase; Provisional	99.49
PRK13578	720	ornithine decarboxylase; Provisional	99.46
KOG2862|consensus	385		99.44
KOG0634|consensus	472		99.43
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.43
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	99.42
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	99.38
KOG0633|consensus	375		99.37
PRK15400	714	lysine decarboxylase CadA; Provisional	99.36
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.36
COG4100	416	Cystathionine beta-lyase family protein involved i	99.32
KOG1358|consensus	467		99.31
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.3
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.3
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.29
KOG0258|consensus	475		99.29
KOG0629|consensus	510		99.28
KOG2467|consensus	477		99.26
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.25
PRK05367	954	glycine dehydrogenase; Provisional	99.17
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.11
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.09
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.07
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.02
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	98.95
KOG2040|consensus	1001		98.94
COG3844	407	Kynureninase [Amino acid transport and metabolism]	98.92
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	98.73
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	98.66
PLN02452	365	phosphoserine transaminase	98.65
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	98.57
PRK12566	954	glycine dehydrogenase; Provisional	98.5
KOG1383|consensus	491		98.43
PRK12462	364	phosphoserine aminotransferase; Provisional	98.4
KOG1405|consensus	484		98.37
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	98.18
KOG1411|consensus	427		97.79
KOG1412|consensus	410		97.28
KOG3846|consensus	465		97.01
KOG3843|consensus	432		96.9
KOG2040|consensus	1001		96.41
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	96.15
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	95.88
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	93.92
smart00642	166	Aamy Alpha-amylase domain.	81.46

>KOG1368|consensus

Probab=100.00  E-value=2e-36  Score=250.98  Aligned_cols=215  Identities=54%  Similarity=0.941  Sum_probs=202.7

Q ss_pred             CCeeeeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeE
Q psy5413          65 NIRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEI  144 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~v  144 (285)
                      -....||+++..+.|..+|+++|.++..++..|+.+|...+||+..|+++|+|.++|+.||+.+|+++++..+.++|.++
T Consensus        20 ~~~~vDLRSDTvT~PTdeMr~am~eA~vgDdVyGeD~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~Hc~~rg~ei   99 (384)
T KOG1368|consen   20 THRSVDLRSDTVTVPTDEMRRAMAEASVGDDVYGEDPTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVHCHQRGSEI   99 (384)
T ss_pred             eeeccccccccccCChHHHHHHHhhcccCcccccCCccHHHHHHHHHHHhCccceeeecccccccHHHHHHHhcCCCceE
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             EecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccc-cccCCceEEEEEecccCCCCeeeCC
Q psy5413         145 IVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTAD-NIHCASTSLVCVENTHNYCGGTVLP  223 (285)
Q Consensus       145 i~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~-~~~~~~~~~v~i~~~~n~~gG~~~~  223 (285)
                      |+.+..|++.++.++++      ...|+.+.++...+++.+|++++|++|.... +.|.+.|++|.+|++++.+||.++|
T Consensus       100 i~gd~~HI~~~E~gg~s------~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlP  173 (384)
T KOG1368|consen  100 IVGDRAHIHRYEQGGIS------QLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLP  173 (384)
T ss_pred             EeccchheeehhccChh------hhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEee
Confidence            99999999999999998      7789999999998999999999999998544 7788999999999999999899999


Q ss_pred             HHHHHHHHHHHHHcCCeEEEeCccC---------ChhhhcccCCeEEEecccccCcceeEEeecCcccccC
Q psy5413         224 MQWLRELKARCQEHNIPVHMDGARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK  285 (285)
Q Consensus       224 ~~~l~~i~~la~~~gi~li~Dea~~---------~~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~~  285 (285)
                      .|++.++.++|++||+.|++|+++.         +...+++.+|.+..|+||+||+|.|.+++++++||++
T Consensus       174 le~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPVGSViVG~k~FI~k  244 (384)
T KOG1368|consen  174 LEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPVGSVIVGSKDFIDK  244 (384)
T ss_pred             HHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCcccEEEccHHHHHH
Confidence            9999999999999999999999977         6667788999999999999999999999999999874

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.98  E-value=4.1e-32  Score=234.88  Aligned_cols=204  Identities=43%  Similarity=0.668  Sum_probs=178.9

Q ss_pred             eeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCC
Q psy5413          70 DIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDC  149 (285)
Q Consensus        70 ~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~  149 (285)
                      ||.|++   ++|+|++++.+...++..|+.++...+|++.+++++|.+.++|+.+|+.||.+++++++ ++++.|++.+.
T Consensus         1 Df~SD~---~~~~m~~a~~~a~~gd~~Yg~D~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~-~~~~~vi~~~~   76 (290)
T PF01212_consen    1 DFRSDT---PTPAMLEAMAAANVGDDAYGEDPTTARLEERIAELFGKEAALFVPSGTMANQLALRAHL-RPGESVICADT   76 (290)
T ss_dssp             EES-SS---S-HHEEHHHHHTTSB-CCTTSSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHH-HTTEEEEEETT
T ss_pred             CCCccC---CCHHHHHHHHccccCCcccCCChhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHH-hcCCceecccc
Confidence            788988   89999999988877877999999999999999999999999999999999999999998 69999999999


Q ss_pred             cceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHH
Q psy5413         150 SHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRE  229 (285)
Q Consensus       150 ~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~  229 (285)
                      +|...++.+++.      ...|.+++.++..+++.+|+++|++.++.... |..++++|+++++++..||.+++.++|++
T Consensus        77 aHi~~~E~ga~~------~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~-h~~~~~~v~le~t~~~~GG~~~s~~el~a  149 (290)
T PF01212_consen   77 AHIHFDETGAIE------ELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGA-HHPQPAVVSLENTTELAGGTVYSLEELRA  149 (290)
T ss_dssp             EHHHHSSTTHHH------HHTTCEEEEEBECTGTBB-HHHHHHHHHHHTG-TSGGEEEEEEESSBTTTTSB---HHHHHH
T ss_pred             ceeeeeccchhh------HhcCcEEEECCCcccCCCCHHHHHHHhhhccc-cCCCccEEEEEecCcCCCCeeCCHHHHHH
Confidence            999999988886      56799999999855499999999999988555 67799999999999999999999999999


Q ss_pred             HHHHHHHcCCeEEEeCccC---------ChhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         230 LKARCQEHNIPVHMDGARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       230 i~~la~~~gi~li~Dea~~---------~~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      |.++||+||+.|++|++|.         .+.++..++|++++|++|.+++|.|+++++++++|+
T Consensus       150 i~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~~Gavl~~~~~~i~  213 (290)
T PF01212_consen  150 ISELAREHGLPLHMDGARLANAAAALGVSLAEIAAGADSVSFGGTKNGGAPGGAVLAGNKEFIA  213 (290)
T ss_dssp             HHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SSSEEEEEESHHHHH
T ss_pred             HHHHHHhCceEEEEehhhHHHhhhcccccHHHHhhhCCEEEEEEEcccccccceEEEechHHHH
Confidence            9999999999999999986         556677899999999999999999999999998764

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.98  E-value=2.8e-31  Score=227.73  Aligned_cols=208  Identities=43%  Similarity=0.705  Sum_probs=180.2

Q ss_pred             eeeeccCCcCCCcHHHHHHHHhcc-cCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEe
Q psy5413          68 TVDIRSDTISKPTMEMKNYMFNCE-VGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIV  146 (285)
Q Consensus        68 ~~~~~~~~~~~~~~~v~~a~~~~~-~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~  146 (285)
                      +++|+|+++.+++|+|+++|.+.. .++..|+.++...++++++++++|.+.++|+.|||+||..++.+.+ ++++.||+
T Consensus         1 ~~~f~SDn~~g~~~~m~eam~~a~~~~~~~YG~D~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~-~~~~~vi~   79 (342)
T COG2008           1 MIDFRSDNVAGPTPEMREALAAANAVGDDVYGEDPTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHC-QPGESVIC   79 (342)
T ss_pred             CCccccCccCCCCHHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhc-CCCCeEEE
Confidence            368999999999999999999887 5688999999999999999999999889999999999999999998 69999999


Q ss_pred             cCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHH
Q psy5413         147 GDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW  226 (285)
Q Consensus       147 ~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~  226 (285)
                      ...+|.+.++.+++.      ...+...+.+...+++.+++++|+..|.. ++.|...+.++++++..+.. |+++|.++
T Consensus        80 ~~~aHi~~~E~Ga~~------~~~~~~~~~~~~g~~Gklt~e~v~~~i~~-~d~~~~~~~~~~~e~~~te~-GtVy~l~e  151 (342)
T COG2008          80 HETAHIYTDECGAPE------FFGGGQKLPIVPGADGKLTPEDVEAAIRP-DDIHHAPTPLAVLENTATEG-GTVYPLDE  151 (342)
T ss_pred             eccccceecccCcHH------HHcCCceeccCCCCCCCcCHHHHHHhhcC-CCcccCCCceEEEeeccCCC-ceecCHHH
Confidence            999999999999987      33334444444447889999999999987 45444566666666655544 99999999


Q ss_pred             HHHHHHHHHHcCCeEEEeCccC---------ChhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         227 LRELKARCQEHNIPVHMDGARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       227 l~~i~~la~~~gi~li~Dea~~---------~~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      |++|.++||+||++|++|++|.         .......++|++++|++|+++.|.|+++++++++++
T Consensus       152 l~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~~~~~  218 (342)
T COG2008         152 LEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNRDFAK  218 (342)
T ss_pred             HHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcceeeeEEEcCHHHHH
Confidence            9999999999999999999977         344566899999999999999999999999999875

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.96  E-value=5.8e-28  Score=211.25  Aligned_cols=217  Identities=19%  Similarity=0.270  Sum_probs=170.1

Q ss_pred             ccccccccccccccCCCCCccceeeccCCccccccccCCeeeeecc----CCcCCCcHHHHHHHHhcccC----CCCccC
Q psy5413          28 ALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRS----DTISKPTMEMKNYMFNCEVG----DDVYLE   99 (285)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~a~~~~~~~----~~~y~~   99 (285)
                      ..+.+..+.+.|+..                      |++|+||.+    .+.+|+||.+.+++.+|...    .+.|. 
T Consensus        26 ~~~~~G~G~~v~D~~----------------------G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~~-   82 (404)
T COG4992          26 VVIVRGEGAYVWDQQ----------------------GREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLFY-   82 (404)
T ss_pred             eeEEeccccEEECCC----------------------CCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcccccC-
Confidence            555667888888755                      555666543    34578999999999988763    34555 


Q ss_pred             ChhHHHHHHHHHhHcC-CCcEEEcCChHHHHHHHHHHccccCC---C-eEE-ecCCcceeeeccccccc--ccccccccc
Q psy5413         100 DPTCKELQEKAAKLAG-KEAAIFVPSGTMGNLIAIMTHCDRRD---S-EII-VGDCSHIMLWEQGGASQ--TSVYSQIGR  171 (285)
Q Consensus       100 ~~~~~~l~~~la~~~g-~~~~~~~~~Gs~a~~~al~~~~~~~g---~-~vi-~~~~~h~~~~~~~~~~~--~~~~~~~~g  171 (285)
                      ++...+|.+.|++..+ .+.++|+|||+|||++|+|++....+   + +|| +.+.+|+-+..  ++++  ++.|++.++
T Consensus        83 ~~~~~~la~~L~~~s~~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~g--alS~t~~~ky~~~F~  160 (404)
T COG4992          83 NEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLG--ALSATGQPKYRKGFG  160 (404)
T ss_pred             ChHHHHHHHHHHhhCccccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccce--eeeccCChhhccCCC
Confidence            5669999999999996 88999999999999999999874333   2 344 36777877643  4444  567776666


Q ss_pred             eeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC---
Q psy5413         172 VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL---  248 (285)
Q Consensus       172 ~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~---  248 (285)
                      +.+-.+..-+.+  |+++++++|++       +|++|++|+.|+.+|-.+.++++|++++++|++||+++|+||+|+   
T Consensus       161 Pl~~g~~~vpfn--Di~al~~ai~~-------~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~G  231 (404)
T COG4992         161 PLLPGFRHVPFN--DIEALEAAIDE-------DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLG  231 (404)
T ss_pred             CCCCCceecCCC--CHHHHHHHhcc-------CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCC
Confidence            555544444455  99999999998       899999999999996666778999999999999999999999988   


Q ss_pred             --ChhhhcccCCeE--EEecccccCc--ceeEEeec
Q psy5413         249 --PLAEVCASVDTV--MFCLSKGLGA--PVGSILAG  278 (285)
Q Consensus       249 --~~~~~~~~~dv~--~~s~sK~l~~--p~gg~~~~  278 (285)
                        +-....+++++.  ++++.|.|||  |+|+++++
T Consensus       232 RTGk~fA~e~~gV~PDI~tlaK~LgGG~PigA~la~  267 (404)
T COG4992         232 RTGKLFAYEHYGVEPDILTLAKALGGGFPIGAMLAT  267 (404)
T ss_pred             ccchHHHHHHhCCCCCEEEeeccccCCccceeeEEc
Confidence              344566777777  8888999998  99999887

>PLN02721 threonine aldolase

Probab=99.95  E-value=1.7e-26  Score=206.80  Aligned_cols=212  Identities=50%  Similarity=0.863  Sum_probs=168.0

Q ss_pred             eeeeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEe
Q psy5413          67 RTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIV  146 (285)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~  146 (285)
                      ++++|.++.+..+++.+.+++.+...+...++.++...+|++.+++++|.+..+++++|++++..++.+++..+||+|++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~   85 (353)
T PLN02721          6 RVVDLRSDTVTKPTDAMRAAMANAEVDDDVLGYDPTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVHCDVRGSEVIL   85 (353)
T ss_pred             hhhhhhcccccCCCHHHHHHHHhccCCCcccCCCHHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHHccCCCCeEEE
Confidence            46789999989999999999986533333444567789999999999999888999999999998888866338999999


Q ss_pred             cCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHH
Q psy5413         147 GDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW  226 (285)
Q Consensus       147 ~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~  226 (285)
                      ++++|...+..+...      ...|.+++.++.++++.+|+++++++|++....+.+++++|++++++|..||.++|.++
T Consensus        86 ~~~~~~~~~~~~~~~------~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~  159 (353)
T PLN02721         86 GDNSHIHLYENGGIS------TLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEY  159 (353)
T ss_pred             cCccceehhcccchh------hhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHH
Confidence            999887665533233      35588888888767778999999999974322222478999999965443399999999


Q ss_pred             HHHHHHHHHHcCCeEEEeCccC---------ChhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         227 LRELKARCQEHNIPVHMDGARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       227 l~~i~~la~~~gi~li~Dea~~---------~~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      +++|.++|++||+++|+||+|.         .......++|.++.++||++++|.|+++++++++++
T Consensus       160 l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~  226 (353)
T PLN02721        160 TDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVGSVIVGSKSFIR  226 (353)
T ss_pred             HHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCceeeEEecCHHHHH
Confidence            9999999999999999999965         122233578888999999999988887888887764

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.94  E-value=1.2e-25  Score=200.14  Aligned_cols=205  Identities=43%  Similarity=0.697  Sum_probs=164.4

Q ss_pred             eeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCC
Q psy5413          70 DIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDC  149 (285)
Q Consensus        70 ~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~  149 (285)
                      ||+++++.+++|.+++++.+.......|+..+...++++.+++++|.+..+++++|++++..++.+++ ++|++|+++++
T Consensus         1 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l~-~~gd~v~~~~~   79 (338)
T cd06502           1 DFRSDTVTGPTPEMLEAMAAANVGDDVYGEDPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAHT-QPGGSVICHET   79 (338)
T ss_pred             CcccccCCCCCHHHHHHHHhcccCCcccCCCHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHhc-CCCCeEEEecC
Confidence            68899999999999999987655444676778899999999999996667999999999999999876 68999999999


Q ss_pred             cceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHH
Q psy5413         150 SHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRE  229 (285)
Q Consensus       150 ~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~  229 (285)
                      +|.+........      ...|.+++.++.+ .+.+|++++++++++..+.+..++++|++++|+|+  |.+++.+++++
T Consensus        80 ~~~~~~~~~~~~------~~~g~~~~~v~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~--g~~~~~~~l~~  150 (338)
T cd06502          80 AHIYTDEAGAPE------FLSGVKLLPVPGE-NGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG--GTVYPLDELKA  150 (338)
T ss_pred             cceeeecCCcHH------HHcCceEEeecCC-CCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC--ccccCHHHHHH
Confidence            987765432222      2358888888874 46789999999997532223346899999999997  55669999999


Q ss_pred             HHHHHHHcCCeEEEeCccC---------ChhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         230 LKARCQEHNIPVHMDGARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       230 i~~la~~~gi~li~Dea~~---------~~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      |+++|++||+++|+||+|.         .......++|+++.|+||++++|.|+++++++++++
T Consensus       151 i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g~~~~~~~~~~~  214 (338)
T cd06502         151 ISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNRDFIA  214 (338)
T ss_pred             HHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCccceEEECCHHHHH
Confidence            9999999999999999874         112223578999999999999887877778877654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.94  E-value=1.2e-25  Score=203.19  Aligned_cols=201  Identities=19%  Similarity=0.181  Sum_probs=163.2

Q ss_pred             CeeeeeccCCcCCCcH-HHHHHHHhcccCCC-CccCChhHHHHHHHHHhHcCC--------Cc-EEEcCChHHHHHHHHH
Q psy5413          66 IRTVDIRSDTISKPTM-EMKNYMFNCEVGDD-VYLEDPTCKELQEKAAKLAGK--------EA-AIFVPSGTMGNLIAIM  134 (285)
Q Consensus        66 ~~~~~~~~~~~~~~~~-~v~~a~~~~~~~~~-~y~~~~~~~~l~~~la~~~g~--------~~-~~~~~~Gs~a~~~al~  134 (285)
                      ..+++|..+.++.+.| .+.+++.+...... .|.+..+..+||+.+++++..        +. ++.++++++|+..++.
T Consensus        28 ~~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~  107 (393)
T COG0436          28 EDVIDLSIGEPDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFL  107 (393)
T ss_pred             CCEEEeCCCCCCCCCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHH
Confidence            3689999999988665 68888887766532 676788899999999988632        23 6899999999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC---CCCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ---KDGTFDLDEMEAKFSTADNIHCASTSLVCVE  211 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~  211 (285)
                      +++ .+||+|+++++++........+.         |.+++.++..   .++.+|+++|++++++       +||+|+++
T Consensus       108 a~~-~pGDeVlip~P~Y~~y~~~~~~~---------gg~~v~v~l~~~~~~f~~d~~~l~~~i~~-------ktk~i~ln  170 (393)
T COG0436         108 ALL-NPGDEVLIPDPGYPSYEAAVKLA---------GGKPVPVPLDEEENGFKPDLEDLEAAITP-------KTKAIILN  170 (393)
T ss_pred             Hhc-CCCCEEEEeCCCCcCHHHHHHhc---------CCEEEEEeCCcCccCCcCCHHHHHhhcCc-------cceEEEEe
Confidence            988 59999999999887665544444         8888888853   3788999999999998       89999999


Q ss_pred             cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhcccCC--eEEEecccccCc--ceeEEee
Q psy5413         212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVCASVD--TVMFCLSKGLGA--PVGSILA  277 (285)
Q Consensus       212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~~~~d--v~~~s~sK~l~~--p~gg~~~  277 (285)
                      +|+||| |.++++++|++|+++|++||+++|+||+|..+          ..+....|  +.+.|+||.+++  ++.|+++
T Consensus       171 ~P~NPT-Gav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v  249 (393)
T COG0436         171 SPNNPT-GAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVV  249 (393)
T ss_pred             CCCCCc-CcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEee
Confidence            999999 99999999999999999999999999998721          11112123  448999998776  8889999


Q ss_pred             cC-ccccc
Q psy5413         278 GP-EEFIQ  284 (285)
Q Consensus       278 ~~-~~~i~  284 (285)
                      ++ +++++
T Consensus       250 ~~~~~l~~  257 (393)
T COG0436         250 GPPEELIA  257 (393)
T ss_pred             cChHHHHH
Confidence            87 66553

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.93  E-value=4.9e-26  Score=203.37  Aligned_cols=233  Identities=18%  Similarity=0.155  Sum_probs=174.4

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC--CC--CccCChh
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG--DD--VYLEDPT  102 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~--~~--~y~~~~~  102 (285)
                      |..+.++.+.++|+..++.++++++.||+..                  .++++|++.+|+.+|+..  +.  .+.++..
T Consensus        27 ~~~i~~aeG~yl~d~~G~r~lDg~sg~W~~~------------------~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~P   88 (449)
T COG0161          27 PRVIVRAEGVYLTDIDGRRYLDGMSGLWCVN------------------HGHGRPEIAEAIKKQLDKLPHVMFGGFTHEP   88 (449)
T ss_pred             ceeeeecceeEEEeCCCCEEEecccHHHHhh------------------cCcCCHHHHHHHHHHHHhCCchhhcccCCch
Confidence            7778899999999999999999999999962                  378999999999998874  22  2223444


Q ss_pred             HHHHHHHHHhHcC---CCcEEEcCChHHHHHHHHHHccccC------CCeEEe--cCCcceeeeccccccc-cccccccc
Q psy5413         103 CKELQEKAAKLAG---KEAAIFVPSGTMGNLIAIMTHCDRR------DSEIIV--GDCSHIMLWEQGGASQ-TSVYSQIG  170 (285)
Q Consensus       103 ~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~al~~~~~~~------g~~vi~--~~~~h~~~~~~~~~~~-~~~~~~~~  170 (285)
                      ..+|.++|+++..   .++++|++|||+|++.|+|++.+++      .+..++  ...||+.+..+..+.. ...++..+
T Consensus        89 a~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~  168 (449)
T COG0161          89 AIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFY  168 (449)
T ss_pred             HHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhc
Confidence            9999999999986   6788999999999999999987532      233343  5899998854333321 12222222


Q ss_pred             ceee---eeeecCC--------CCC----CCHHHHHHHhcccccccCCceEEEEEecccCC-CCeeeCCHHHHHHHHHHH
Q psy5413         171 RVLM---RGVTNQK--------DGT----FDLDEMEAKFSTADNIHCASTSLVCVENTHNY-CGGTVLPMQWLRELKARC  234 (285)
Q Consensus       171 g~~~---~~~~~~~--------~~~----~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~-~gG~~~~~~~l~~i~~la  234 (285)
                      ...+   ..++.+.        .+.    -.+++|++.|.++   +.++++++++|++.+. +|..++|+.++++++++|
T Consensus       169 ~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~---g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC  245 (449)
T COG0161         169 DPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEH---GPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREIC  245 (449)
T ss_pred             cccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhc---CcccEEEEEecccccccCCcccCChHHHHHHHHHH
Confidence            2221   1222211        111    2366788888773   2268999999996666 767778899999999999


Q ss_pred             HHcCCeEEEeCc-----cCChhhhcccCCeE--EEecccccCc---ceeEEeecCc
Q psy5413         235 QEHNIPVHMDGA-----RLPLAEVCASVDTV--MFCLSKGLGA---PVGSILAGPE  280 (285)
Q Consensus       235 ~~~gi~li~Dea-----~~~~~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~  280 (285)
                      ++|||++|+||+     |++..+.++++++.  ++|++|+|++   |+++++++++
T Consensus       246 ~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~  301 (449)
T COG0161         246 DKYGILLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDR  301 (449)
T ss_pred             HHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeeeecccccccchhhHhHhhhHH
Confidence            999999999999     44777888888888  8999999988   9999888764

>PRK10534 L-threonine aldolase; Provisional

Probab=99.92  E-value=2.2e-24  Score=191.82  Aligned_cols=206  Identities=46%  Similarity=0.812  Sum_probs=159.7

Q ss_pred             eeeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEec
Q psy5413          68 TVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVG  147 (285)
Q Consensus        68 ~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~  147 (285)
                      ++||++++...++|.+++++.+...+...|++++...+|++.+++++|.+..+++.+|++++..++.+.+ .+|++|+++
T Consensus         1 ~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Y~~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~~-~~gd~vi~~   79 (333)
T PRK10534          1 MIDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSHC-ERGEEYIVG   79 (333)
T ss_pred             CcccccccCCCCCHHHHHHHHhccCCCcccCCCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHhc-CCCCeeEEe
Confidence            3688877767799999999988766677888889999999999999999999999999999999998876 589998888


Q ss_pred             CCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHH
Q psy5413         148 DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWL  227 (285)
Q Consensus       148 ~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l  227 (285)
                      .++|.+.+...+..      ...+.+.+.++.++++.+|+++|+++++++. .+..++++|++++|+|   |.+++.+++
T Consensus        80 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~-~~~~~~~lv~l~np~~---G~v~~~~~l  149 (333)
T PRK10534         80 QAAHNYLYEAGGAA------VLGSIQPQPIDAAADGTLPLDKVAAKIKPDD-IHFARTRLLSLENTHN---GKVLPREYL  149 (333)
T ss_pred             chhhhhHhcCCchH------HhcCceEEeecCCCCCCCCHHHHHHhhcccC-cCcccceEEEEecCCC---CeecCHHHH
Confidence            77775433322111      1123566777766678899999999986511 1112578999997664   999999999


Q ss_pred             HHHHHHHHHcCCeEEEeCccCC---------hhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         228 RELKARCQEHNIPVHMDGARLP---------LAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       228 ~~i~~la~~~gi~li~Dea~~~---------~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      ++|+++|++||++|++||+|.-         ........|.++.++||.++++.|+++++++++++
T Consensus       150 ~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~~G~~~~~~~~~i~  215 (333)
T PRK10534        150 KQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIK  215 (333)
T ss_pred             HHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCcccceEEcCHHHHH
Confidence            9999999999999999998661         11112345777779999999888878888888764

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.92  E-value=1.5e-23  Score=188.43  Aligned_cols=236  Identities=17%  Similarity=0.127  Sum_probs=166.7

Q ss_pred             CCCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeecc----CCcCCCcHHHHHHHHhcccC----CCC
Q psy5413          25 PTPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRS----DTISKPTMEMKNYMFNCEVG----DDV   96 (285)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~a~~~~~~~----~~~   96 (285)
                      +-|..+.++.+.++|+..                      |+.|+||.+    -+.++.||.|.+|+++|+..    +..
T Consensus        37 ~~p~~~~ra~G~~l~Dvd----------------------G~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~   94 (447)
T COG0160          37 RFPLVIVRAEGAYLYDVD----------------------GNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTR   94 (447)
T ss_pred             cCcceEEecccCEEEeCC----------------------CCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcccCC
Confidence            456666666666666633                      677788876    35677999999999987763    334


Q ss_pred             ccCChhHHHHHHHHHhHcC---CCcEEEcCChHHHHHHHHHHccccCCCe-EEe-cCCcceeeecccccccc-ccccc--
Q psy5413          97 YLEDPTCKELQEKAAKLAG---KEAAIFVPSGTMGNLIAIMTHCDRRDSE-IIV-GDCSHIMLWEQGGASQT-SVYSQ--  168 (285)
Q Consensus        97 y~~~~~~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi~-~~~~h~~~~~~~~~~~~-~~~~~--  168 (285)
                      |...+...++.++|.+.+.   .+.++|++||++||++|++++....|.. ||. ...||+.+.....++.. ..+..  
T Consensus        95 ~~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~  174 (447)
T COG0160          95 DLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGF  174 (447)
T ss_pred             cccchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCC
Confidence            4444668888999988864   3567999999999999999998666653 443 67889988665544431 22211  


Q ss_pred             -ccceeeeeeecCCCC------------CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHH
Q psy5413         169 -IGRVLMRGVTNQKDG------------TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQ  235 (285)
Q Consensus       169 -~~g~~~~~~~~~~~~------------~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~  235 (285)
                       .....+..+|.+..+            ....+.++..+.. ...+..+++++++|+.++.+|-.+.|.++++++.++|+
T Consensus       175 ~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~-~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~  253 (447)
T COG0160         175 GPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFD-LEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCR  253 (447)
T ss_pred             CCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHh-hcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHH
Confidence             122224445442211            1134456665644 44456689999999999999777788899999999999


Q ss_pred             HcCCeEEEeCccC-----ChhhhcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413         236 EHNIPVHMDGARL-----PLAEVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       236 ~~gi~li~Dea~~-----~~~~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      +||+++|+||+|+     +-....++.++.  +.|++|.+++  |+++++ +++++++
T Consensus       254 ~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~ig~G~Pl~avv-~r~ei~~  310 (447)
T COG0160         254 EHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGGGLPLSAVV-GRAEIMD  310 (447)
T ss_pred             HcCCEEEEeccccCCCccccchhhhhcCCCCCEEEecccccCCCceeEEe-ccHHhcc
Confidence            9999999999988     434555677777  8888899988  877654 5566543

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.91  E-value=1.7e-23  Score=186.49  Aligned_cols=204  Identities=22%  Similarity=0.311  Sum_probs=166.7

Q ss_pred             CeeeeeccCCcCC-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeE
Q psy5413          66 IRTVDIRSDTISK-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEI  144 (285)
Q Consensus        66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~v  144 (285)
                      .-++||.+++.+. +++++.+||..   ++..|+.+|.+.+|++.+++++|.+.++++.+|..+..++++.++.++|+++
T Consensus        41 dV~IDLrSDTgT~apS~~m~aAM~~---GDD~Y~gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~~~~~~~g~e~  117 (467)
T TIGR02617        41 DVFIDLLTDSGTGAVTQSMQAAMMR---GDEAYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEK  117 (467)
T ss_pred             CeEEECccCCCCCCCCHHHHHHHHc---CCcccccCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHHhhcccccccc
Confidence            4679999999996 99999999986   7789999999999999999999999999999999999999999885578887


Q ss_pred             EecCC----cceeeecc-cccccccccccccceeeeeee----------cCCCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413         145 IVGDC----SHIMLWEQ-GGASQTSVYSQIGRVLMRGVT----------NQKDGTFDLDEMEAKFSTADNIHCASTSLVC  209 (285)
Q Consensus       145 i~~~~----~h~~~~~~-~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~  209 (285)
                      ++...    .|.+.+.. ++.+      ...|+..+.++          .+.++.+|+++|+++|+++.   .+++..+.
T Consensus       118 g~~~~~~~v~hn~~fett~g~a------~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g---~~~i~~v~  188 (467)
T TIGR02617       118 GLDRSKMVAFSNYFFDTTQGHS------QINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVG---PNNVPYIV  188 (467)
T ss_pred             cccccccccceEEEEecchHHH------HHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcC---CCCceeee
Confidence            76554    45444442 3333      34577766543          23467899999999998631   12566777


Q ss_pred             EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-----------------Chhhh----cccCCeEEEeccccc
Q psy5413         210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-----------------PLAEV----CASVDTVMFCLSKGL  268 (285)
Q Consensus       210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-----------------~~~~~----~~~~dv~~~s~sK~l  268 (285)
                      ++-++|..||+++|.++++++.++|++||+.+++|+++.                 ++..+    ..++|.+++|++|.+
T Consensus       189 ~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKgl  268 (467)
T TIGR02617       189 ATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDA  268 (467)
T ss_pred             eeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCC
Confidence            777788889999999999999999999999999999854                 22233    378999999999999


Q ss_pred             CcceeEEeecCcc
Q psy5413         269 GAPVGSILAGPEE  281 (285)
Q Consensus       269 ~~p~gg~~~~~~~  281 (285)
                      +.|+||+++++++
T Consensus       269 gApvGg~Lag~d~  281 (467)
T TIGR02617       269 MVPMGGLLCFKDD  281 (467)
T ss_pred             CCcccceEEecch
Confidence            9999999999876

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.91  E-value=1.4e-23  Score=193.08  Aligned_cols=207  Identities=17%  Similarity=0.277  Sum_probs=159.7

Q ss_pred             cCCeeeeeccCCc--CCCcH----HHHHHHHhccc-CCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHc
Q psy5413          64 VNIRTVDIRSDTI--SKPTM----EMKNYMFNCEV-GDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        64 ~~~~~~~~~~~~~--~~~~~----~v~~a~~~~~~-~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~  136 (285)
                      .|.++++|..+.+  +..+|    .+.+++.+++. +...|+..+...+|++.++++++.+.++++++|++|+..++.++
T Consensus        34 ~g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~g~~~Y~~~~g~~~Lreaia~~~~~~~vv~t~ggt~A~~~~~~al  113 (460)
T PRK13238         34 AGYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMRGDEAYAGSRSYYRLEDAVKDIFGYPYTIPTHQGRAAEQILFPVL  113 (460)
T ss_pred             cCCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHhCCcccCCCCCHHHHHHHHHHHhCCCcEEECCCHHHHHHHHHHHh
Confidence            4667888888776  34333    46776665553 56789988899999999999999999999999999999999988


Q ss_pred             cccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC----------CCCCCHHHHHHHhcccccccCCceE
Q psy5413         137 CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK----------DGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       137 ~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                      + ++|| |+++++.+..+....         ...|.+++.++.++          .+.+|+++|+++|++.   ..++++
T Consensus       114 l-~pGD-Vii~~p~~~~~~~~i---------~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~---~~~~tk  179 (460)
T PRK13238        114 I-KKGD-VVPSNYHFDTTRAHI---------ELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEV---GAENVP  179 (460)
T ss_pred             C-CCCC-EEccCCcccchHHHH---------HHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhc---CCCcee
Confidence            7 6999 777766433322211         23477777777632          2459999999999852   113799


Q ss_pred             EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC--hh---------------hh----cccCCeEEEecc
Q psy5413         207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP--LA---------------EV----CASVDTVMFCLS  265 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~--~~---------------~~----~~~~dv~~~s~s  265 (285)
                      +|++++|+|++||.+++.+++++|+++|++||++||+|++|..  ..               .+    ....|++++|..
T Consensus       180 ~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~  259 (460)
T PRK13238        180 FIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAK  259 (460)
T ss_pred             EEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecc
Confidence            9999999999988999999999999999999999999998741  10               01    145899999999


Q ss_pred             cccCcceeEEeecC-ccccc
Q psy5413         266 KGLGAPVGSILAGP-EEFIQ  284 (285)
Q Consensus       266 K~l~~p~gg~~~~~-~~~i~  284 (285)
                      |.+.+|.||+++.+ +++++
T Consensus       260 K~g~~~~GG~i~~~d~~l~~  279 (460)
T PRK13238        260 KDAMVNIGGLLCFRDEDLFT  279 (460)
T ss_pred             cCCCCcceeEEEcChHHHHH
Confidence            99888999999987 45543

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.90  E-value=4.2e-23  Score=182.56  Aligned_cols=231  Identities=18%  Similarity=0.115  Sum_probs=169.6

Q ss_pred             CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCCCcc-CChhHH
Q psy5413          26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYL-EDPTCK  104 (285)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~-~~~~~~  104 (285)
                      .|..+.+..+.+.|+..++.+++-...|..-.                  .+|.+|.|.+|+++++.....|+ +.+...
T Consensus        35 ~P~fi~~g~Ga~l~DvDGn~YIDy~~~~Gp~i------------------lGH~~p~V~~Av~~~l~~G~~fg~Pte~Ei   96 (432)
T COG0001          35 YPIFIERGKGAYLTDVDGNEYIDYVLGWGPLI------------------LGHAHPAVVEAVQEQLERGLSFGAPTELEV   96 (432)
T ss_pred             CCeeEEeccCCeEEeCCCCEeeehhccCcccc------------------cCCCCHHHHHHHHHHHHhcCCCCCCCHHHH
Confidence            46677777778888877777777666665532                  37899999999999998777776 666778


Q ss_pred             HHHHHHHhHcCC-CcEEEcCChHHHHHHHHHHccccCCCeEE--ecCCcceeeeccccccc-c------cccc---cccc
Q psy5413         105 ELQEKAAKLAGK-EAAIFVPSGTMGNLIAIMTHCDRRDSEII--VGDCSHIMLWEQGGASQ-T------SVYS---QIGR  171 (285)
Q Consensus       105 ~l~~~la~~~g~-~~~~~~~~Gs~a~~~al~~~~~~~g~~vi--~~~~~h~~~~~~~~~~~-~------~~~~---~~~g  171 (285)
                      ++.+.+.++++. +.+-|++|||+|.+.|+++++...|+..|  ....||+..+....-+. .      +...   ....
T Consensus        97 ~~Aell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a  176 (432)
T COG0001          97 ELAELLIERVPSIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVA  176 (432)
T ss_pred             HHHHHHHHhcCcccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhh
Confidence            899999999887 88899999999999999999876775433  36788887765332110 0      0000   0011


Q ss_pred             eeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC--
Q psy5413         172 VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP--  249 (285)
Q Consensus       172 ~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~--  249 (285)
                      ..++.+|.     .|++.+++++++    .++++++|++|++.+..|....++++|++|+++|++||++||.||+.++  
T Consensus       177 ~~ti~~~y-----ND~~al~~~~~~----~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR  247 (432)
T COG0001         177 KHTLVLPY-----NDLEALEEAFEE----YGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFR  247 (432)
T ss_pred             ccEEEecC-----CCHHHHHHHHHH----cCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcc
Confidence            11222222     399999999988    4668999999997666634456689999999999999999999999773  


Q ss_pred             --hhhhcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413         250 --LAEVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       250 --~~~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                        +......+.+.  +.+++|.+||  |.| .+.+++|+++
T Consensus       248 ~~~gGaq~~~gi~PDlttlGKiIGGGlP~g-a~gGr~eiM~  287 (432)
T COG0001         248 VALGGAQGYYGVEPDLTTLGKIIGGGLPIG-AFGGRAEIME  287 (432)
T ss_pred             cCCcccccccCcCcchhhhhhhhcCCccee-eeccHHHHHh
Confidence              34445556666  7888899988  766 5667888876

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.90  E-value=9.6e-23  Score=182.32  Aligned_cols=221  Identities=16%  Similarity=0.111  Sum_probs=155.5

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccC----CcCCCcHHHHHHHHhcccCC----CCcc
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSD----TISKPTMEMKNYMFNCEVGD----DVYL   98 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~----~~y~   98 (285)
                      |..+.++.+.+.|+..                      |++++||.++    +.+++||++.+++.+++...    ..| 
T Consensus         7 ~~~~~~~~G~~l~D~d----------------------G~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~-   63 (364)
T PRK04013          7 RLRLVRGEGIYVWDSQ----------------------GRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGPMF-   63 (364)
T ss_pred             CccEEEeecCEEEECC----------------------CCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCccCCc-
Confidence            4455566777777754                      4555665443    45789999999999887642    123 


Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCC-CeEEe-cCCcceeeecccccccccccccccceeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRD-SEIIV-GDCSHIMLWEQGGASQTSVYSQIGRVLMRG  176 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g-~~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~  176 (285)
                      .++...+++++++++.+.+.++|++|||+|++.|++++...+| ++|+. ...||+.+.....+...+.+...++..+..
T Consensus        64 ~~~~~~~la~~l~~~~~~~~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~  143 (364)
T PRK04013         64 EHEEKEEMLEELSKWVNYEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPG  143 (364)
T ss_pred             CCHHHHHHHHHHHhhcCCCEEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCC
Confidence            3566899999999999888899999999999999999886667 45554 567888764433222112222222211111


Q ss_pred             eecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----hh
Q psy5413         177 VTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----AE  252 (285)
Q Consensus       177 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----~~  252 (285)
                      +...+.  .|++.+++.+.+       ++++|++|+.++..|....|.+++++++++|++||+++|+||+++++    ..
T Consensus       144 ~~~~~~--~d~~~l~~~i~~-------~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~  214 (364)
T PRK04013        144 FKHIPF--NDVEAAKEAITK-------ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFL  214 (364)
T ss_pred             cEEecC--CCHHHHHHHhcC-------CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchh
Confidence            111011  278899998876       89999999999987666778899999999999999999999998843    22


Q ss_pred             hcccCCeE--EEecccccCc--ceeEEeecC
Q psy5413         253 VCASVDTV--MFCLSKGLGA--PVGSILAGP  279 (285)
Q Consensus       253 ~~~~~dv~--~~s~sK~l~~--p~gg~~~~~  279 (285)
                      ..+.+++.  +.+++|.+++  |+++++...
T Consensus       215 a~~~~gv~PDiv~~gK~lggG~P~~a~~~~~  245 (364)
T PRK04013        215 AIEHYKVEPDIVTMGKGIGNGVPVSLTLTNF  245 (364)
T ss_pred             HHHhcCCCCCEEEecccccCCceeEEEEecc
Confidence            23344554  6777899987  888877653

>KOG0257|consensus

Probab=99.90  E-value=5.2e-23  Score=179.12  Aligned_cols=195  Identities=17%  Similarity=0.132  Sum_probs=144.2

Q ss_pred             eccCCcCCCcH-HHHHHHHhcccC--CCCcc----CChhHHHHHHHHHhHcCC-----CcEEEcCChHHHHHHHHHHccc
Q psy5413          71 IRSDTISKPTM-EMKNYMFNCEVG--DDVYL----EDPTCKELQEKAAKLAGK-----EAAIFVPSGTMGNLIAIMTHCD  138 (285)
Q Consensus        71 ~~~~~~~~~~~-~v~~a~~~~~~~--~~~y~----~~~~~~~l~~~la~~~g~-----~~~~~~~~Gs~a~~~al~~~~~  138 (285)
                      |..+-++.+.| -+.+++++.+.+  ...|+    ..+....|++.+++++|.     +.+++++++.+|+..++..++ 
T Consensus        36 LgqGfp~~~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~-  114 (420)
T KOG0257|consen   36 LGQGFPDFPPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLL-  114 (420)
T ss_pred             ccCCCCCCCCcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHc-
Confidence            55555666555 677777766654  23444    444445555555554443     336888889999999999988 


Q ss_pred             cCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--------CCCCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413         139 RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--------KDGTFDLDEMEAKFSTADNIHCASTSLVCV  210 (285)
Q Consensus       139 ~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i  210 (285)
                      .+||+||+.++++.+......++         |...+.++..        +++.+|.++++.++++       +|++|++
T Consensus       115 ~~GDeVii~eP~fd~Y~~~~~ma---------G~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~-------kTk~Ii~  178 (420)
T KOG0257|consen  115 NPGDEVIVFEPFFDCYIPQVVMA---------GGTPVFVPLKPKEGNVSSSDWTLDPEELESKITE-------KTKAIIL  178 (420)
T ss_pred             CCCCEEEEecCcchhhhhHHhhc---------CCcceeeccccccccccCccccCChHHHHhhccC-------CccEEEE
Confidence            59999999988876665544454         5555544432        4677999999999999       8999999


Q ss_pred             ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc-----ccCCeEEEecccccCc--ceeEEe
Q psy5413         211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC-----ASVDTVMFCLSKGLGA--PVGSIL  276 (285)
Q Consensus       211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~-----~~~dv~~~s~sK~l~~--p~gg~~  276 (285)
                      ++|+||+ |.++++++|++|+++|++||+++|.||+|.-+.       ...     ...-+-+.|++|.++.  ++.|++
T Consensus       179 ntPhNPt-GkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~  257 (420)
T KOG0257|consen  179 NTPHNPT-GKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWA  257 (420)
T ss_pred             eCCCCCc-CcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeee
Confidence            9999999 999999999999999999999999999977111       111     1122448999999877  888889


Q ss_pred             ecCcccc
Q psy5413         277 AGPEEFI  283 (285)
Q Consensus       277 ~~~~~~i  283 (285)
                      +++++++
T Consensus       258 igp~~L~  264 (420)
T KOG0257|consen  258 IGPKHLY  264 (420)
T ss_pred             echHHhh
Confidence            8877665

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.90  E-value=8.1e-23  Score=185.92  Aligned_cols=228  Identities=18%  Similarity=0.184  Sum_probs=151.7

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC---CCccCChhH
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD---DVYLEDPTC  103 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~---~~y~~~~~~  103 (285)
                      |..+.++.+.+.|+..++.+++.+..++.                  .+.++.||++.+++.+++...   ..+...+..
T Consensus        23 p~~~~~~~G~~l~d~~G~~~lD~~~g~~~------------------~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~   84 (396)
T PRK04073         23 PIVISEAEGVWVKDPEGNRYMDMLSAYSA------------------VNQGHRHPKIIQALKDQADKVTLTSRAFHSDQL   84 (396)
T ss_pred             CceEEeeeecEEEECCCCEEEEcCCCHHh------------------ccCCCCCHHHHHHHHHHHhhccccccccCCHHH
Confidence            55666777777777554444443333332                  134779999999999887631   112245668


Q ss_pred             HHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcccc--------CC-CeEEe-cCCcceeeeccccccccccccccccee
Q psy5413         104 KELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDR--------RD-SEIIV-GDCSHIMLWEQGGASQTSVYSQIGRVL  173 (285)
Q Consensus       104 ~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~--------~g-~~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~~  173 (285)
                      .+|+++++++.+.+.++|++||++|++.|++++...        +| ++|+. ...+|+.+.....+...+.+...++..
T Consensus        85 ~~l~~~l~~~~~~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~  164 (396)
T PRK04073         85 GPWYEKVAKLTGKDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPM  164 (396)
T ss_pred             HHHHHHHHhcCCCCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCC
Confidence            899999999998888999999999999999998532        34 34544 567888775433222111121111111


Q ss_pred             ---eeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh
Q psy5413         174 ---MRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL  250 (285)
Q Consensus       174 ---~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~  250 (285)
                         +..++.     .|++++++.+++       ++++|++++++|++|....+.+++++|.++|++||+++|+||+|+++
T Consensus       165 ~~~~~~~~~-----~d~~~l~~~i~~-------~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~  232 (396)
T PRK04073        165 LPGIKKIPY-----GDLEALKAAITP-------NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGL  232 (396)
T ss_pred             CCCceEeCC-----CCHHHHHHhccc-------CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCC
Confidence               122222     288999999876       78999999999999444445678999999999999999999998843


Q ss_pred             h-----hhcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413         251 A-----EVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       251 ~-----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      .     ...+..++.  +.+++|.+++  .+.|++++++++++
T Consensus       233 g~~g~~~~~~~~~~~pdi~~~sK~lg~gg~~ig~~~~~~~i~~  275 (396)
T PRK04073        233 GRTGKLFACDWDNVTPDMYILGKALGGGVFPISCVAANRDILG  275 (396)
T ss_pred             CcCcHHHHhhhcCCCCCEEEecccccCCCCcceEEEEcHHHHh
Confidence            2     111222221  4567899877  23456667776654

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.90  E-value=1.4e-22  Score=184.28  Aligned_cols=223  Identities=19%  Similarity=0.197  Sum_probs=152.8

Q ss_pred             CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeecc----CCcCCCcHHHHHHHHhcccCC---CCcc
Q psy5413          26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRS----DTISKPTMEMKNYMFNCEVGD---DVYL   98 (285)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~a~~~~~~~~---~~y~   98 (285)
                      .|..+.++.+.+.|+..                      |++++||.+    .+.++.+|+|.+++.+++...   ....
T Consensus        17 ~~~~~~~~~G~~l~d~d----------------------G~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~   74 (397)
T TIGR03246        17 APFIPVRGEGSRVWDQQ----------------------GKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNGY   74 (397)
T ss_pred             CCceEEEeecCEEEeCC----------------------CCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccccCcc
Confidence            35666677777777743                      556677765    356779999999999887631   1112


Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcccc------CCC-eEE-ecCCcceeeeccccccccccccccc
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDR------RDS-EII-VGDCSHIMLWEQGGASQTSVYSQIG  170 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~------~g~-~vi-~~~~~h~~~~~~~~~~~~~~~~~~~  170 (285)
                      .++...+|+++|+++.+.+.++|++||++|++.|++++...      +++ .|+ ....||+.+.....++..+.+...+
T Consensus        75 ~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~  154 (397)
T TIGR03246        75 TNEPVLRLAKKLVDATFADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGF  154 (397)
T ss_pred             CCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCC
Confidence            35668899999999998888999999999999999998532      233 344 4678898875332222111111111


Q ss_pred             ---ceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCcc
Q psy5413         171 ---RVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGAR  247 (285)
Q Consensus       171 ---g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~  247 (285)
                         ...+..++.     .|++++++.+.+       ++++|++|++++++|....|.++|++|+++|++||+++|+||+|
T Consensus       155 ~~~~~~~~~~~~-----~d~~~l~~~l~~-------~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~  222 (397)
T TIGR03246       155 APLPGGIKHAPY-----NDLAAAKALISD-------KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQ  222 (397)
T ss_pred             CCCCCceEEeCC-----CCHHHHHHHhcc-------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh
Confidence               112222332     389999999976       79999999998887334458999999999999999999999998


Q ss_pred             CChh-----hhcccCCeE--EEecccccCc--ceeEEeecCcccc
Q psy5413         248 LPLA-----EVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFI  283 (285)
Q Consensus       248 ~~~~-----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i  283 (285)
                      +++.     ......++.  +.+++|.+++  |.|+++ ++++++
T Consensus       223 tG~Gr~G~~~a~~~~gv~pDi~t~~K~lggG~pigav~-~~~~i~  266 (397)
T TIGR03246       223 TGVGRTGELYAYMHYGVTPDILTSAKALGGGFPIGAML-TTTEIA  266 (397)
T ss_pred             hcCCccccchhhhhcCCCCCEEEeehhhhCCcceeEEE-EcHHHH
Confidence            7441     122222322  5688899965  666655 455554

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>KOG1401|consensus

Probab=99.90  E-value=9.4e-23  Score=176.71  Aligned_cols=227  Identities=18%  Similarity=0.187  Sum_probs=168.6

Q ss_pred             CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC--CC--CccCCh
Q psy5413          26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG--DD--VYLEDP  101 (285)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~--~~--~y~~~~  101 (285)
                      .|..+.+.++..+|+..++.+++.++.||...                  +++.+|++.+++.++...  |.  .|...+
T Consensus        38 ~pv~~~~gkg~kl~D~~g~EyiD~~ssw~~~~------------------~Ghanpev~ral~~q~~k~~hs~~~~~t~e   99 (433)
T KOG1401|consen   38 YPVVIESGKGSKLFDPDGKEYIDFTSSWAVTI------------------LGHANPEVARALAEQAKKLGHSSNGYFTLE   99 (433)
T ss_pred             CceeeecceeeeeecCCcceeeeeccceeccc------------------cCCCCHHHHHHHHHHHhhheeccCccccHH
Confidence            34777777888899999999999999999852                  277899999999887763  33  333344


Q ss_pred             hHHHHHHHHHhHc---CCCcEEEcCChHHHHHHHHHHccccCCC--------eEEecCCcceeeeccccccccccccccc
Q psy5413         102 TCKELQEKAAKLA---GKEAAIFVPSGTMGNLIAIMTHCDRRDS--------EIIVGDCSHIMLWEQGGASQTSVYSQIG  170 (285)
Q Consensus       102 ~~~~l~~~la~~~---g~~~~~~~~~Gs~a~~~al~~~~~~~g~--------~vi~~~~~h~~~~~~~~~~~~~~~~~~~  170 (285)
                       ..++++.+.+..   ..++++|+||||+|++.|++++++..+.        .|-+.+.||+.+..+........|.-.+
T Consensus       100 -av~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~  178 (433)
T KOG1401|consen  100 -AVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPF  178 (433)
T ss_pred             -HHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCC
Confidence             888999999998   5678899999999999999998743321        2334688898774433222122232212


Q ss_pred             ce---eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCcc
Q psy5413         171 RV---LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGAR  247 (285)
Q Consensus       171 g~---~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~  247 (285)
                      +.   .++..+     ..|.+++++.++.    |.+.+++||+|+.++.+|...++++++..|+.+|+++|++||.||++
T Consensus       179 ~p~~p~v~~~~-----ynd~t~l~k~~~~----h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~  249 (433)
T KOG1401|consen  179 DPIAPDVVTAE-----YNDSTALEKLFES----HKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQ  249 (433)
T ss_pred             CCCCCceeecc-----cCCHHHHHHHHHh----CCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhh
Confidence            11   111111     2389999999988    56679999999999999778889999999999999999999999998


Q ss_pred             CCh-----hhhcccCCeE--EEecccccCc--ceeEEeecCc
Q psy5413         248 LPL-----AEVCASVDTV--MFCLSKGLGA--PVGSILAGPE  280 (285)
Q Consensus       248 ~~~-----~~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~  280 (285)
                      +++     ..+.+++.+.  +.|+.|.|++  |+|+++++++
T Consensus       250 tG~gR~g~~~a~e~~~~~PDI~t~aK~L~gGlPigA~~v~~k  291 (433)
T KOG1401|consen  250 TGLGRLGYGWAQEYFGVTPDITTVAKPLGGGLPIGATGVRDK  291 (433)
T ss_pred             hCccccchHHHHHHhCcCCcceeehhhccCCceeEEEeehHH
Confidence            843     3333444444  7777899988  9999888764

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.90  E-value=1.5e-22  Score=183.51  Aligned_cols=194  Identities=14%  Similarity=0.229  Sum_probs=155.2

Q ss_pred             CCCcHHHHHHHHhcccCCC---------CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEec
Q psy5413          77 SKPTMEMKNYMFNCEVGDD---------VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVG  147 (285)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~---------~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~  147 (285)
                      +...+++.+++.+...+..         .+...+...++++.+++++|.+.+++++||++|+..++.+++ ++|++|+++
T Consensus        30 ~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~~~al~~l~-~~gd~Vlv~  108 (387)
T PRK09331         30 GILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDEARVTHGAREGKFAVMHSLC-KKGDYVVLD  108 (387)
T ss_pred             CCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhc-CCCCEEEEC
Confidence            4467799999887664311         112456789999999999999999999999999999999987 689999999


Q ss_pred             CCcceeeecccccccccccccccceeeeeeec--CCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHH
Q psy5413         148 DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN--QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQ  225 (285)
Q Consensus       148 ~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~  225 (285)
                      ...|.+.....         ...|.+++.++.  ++++.+|++++++++++..+.+.+++++|+++++++++ |.+.|  
T Consensus       109 ~~~h~s~~~~~---------~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~t-G~~~~--  176 (387)
T PRK09331        109 GLAHYTSYVAA---------ERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNY-GNLAD--  176 (387)
T ss_pred             CCchHHHHHHH---------HHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCC-ccccc--
Confidence            98887775432         244888888887  56777999999999975211122468999999999998 89999  


Q ss_pred             HHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCc-ceeEEeecCccccc
Q psy5413         226 WLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGA-PVGSILAGPEEFIQ  284 (285)
Q Consensus       226 ~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~-p~gg~~~~~~~~i~  284 (285)
                       +++|+++|++||+++|+|++|+ +   ......++|+++.|+||++++ +.+|++++++++++
T Consensus       177 -l~~I~~la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~  239 (387)
T PRK09331        177 -AKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAPSGVLATTEEYAD  239 (387)
T ss_pred             -HHHHHHHHHHcCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHh
Confidence             9999999999999999999998 2   333345789999999999987 55778888887665

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.90  E-value=8.7e-23  Score=181.64  Aligned_cols=199  Identities=24%  Similarity=0.271  Sum_probs=162.9

Q ss_pred             CCeeeeeccCCcCC--CcHHHHHHHHhcccC--------CCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK--PTMEMKNYMFNCEVG--------DDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~  134 (285)
                      ++++++|.++++-+  .||++++++.+.+..        ...+++.+.+.+||+.||+++|.+.+++++||-.||..++.
T Consensus        38 ~~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~al~f~SGy~AN~~~i~  117 (388)
T COG0156          38 GRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEAALLFSSGFVANLGLLS  117 (388)
T ss_pred             CceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEEcccchhHHHHHH
Confidence            57899999888777  788888887766542        12567888899999999999999999999999999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      +++ +++|.|+.+...|.+......++         +.+++.++.     .|+++||+.+++...... +.++|+++.+.
T Consensus       118 ~l~-~~~dli~~D~lnHASiidG~rls---------~a~~~~f~H-----nD~~~Le~~l~~~~~~~~-~~~~IvtegVf  181 (388)
T COG0156         118 ALL-KKGDLIFSDELNHASIIDGIRLS---------RAEVRRFKH-----NDLDHLEALLEEARENGA-RRKLIVTEGVF  181 (388)
T ss_pred             Hhc-CCCcEEEEechhhhhHHHHHHhC---------CCcEEEecC-----CCHHHHHHHHHhhhccCC-CceEEEEeccc
Confidence            988 57887888888898876655555         667666665     599999999987432222 56899999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC---------Chhhhc----ccCCeEEEecccccCcceeEEeecCcc
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL---------PLAEVC----ASVDTVMFCLSKGLGAPVGSILAGPEE  281 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~---------~~~~~~----~~~dv~~~s~sK~l~~p~gg~~~~~~~  281 (285)
                      +.. |.+.|   |++|++++++||.++++||+|+         ++....    ...|+++.|++|.||. .||+++++++
T Consensus       182 SMd-GdiAp---L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs-~Gg~v~g~~~  256 (388)
T COG0156         182 SMD-GDIAP---LPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGS-SGGYIAGSAA  256 (388)
T ss_pred             cCC-CCcCC---HHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcc-cCceeeCcHH
Confidence            999 99999   9999999999999999999988         222111    3347889999999996 8999999987


Q ss_pred             ccc
Q psy5413         282 FIQ  284 (285)
Q Consensus       282 ~i~  284 (285)
                      +++
T Consensus       257 ~~d  259 (388)
T COG0156         257 LID  259 (388)
T ss_pred             HHH
Confidence            764

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.89  E-value=1.9e-22  Score=185.84  Aligned_cols=211  Identities=17%  Similarity=0.132  Sum_probs=146.7

Q ss_pred             cCCeeeeeccC----CcCCCcHHHHHHHHhcccCCCCc-cCChhHHHHHHHHHhHc-CCCcEEEcCChHHHHHHHHHHcc
Q psy5413          64 VNIRTVDIRSD----TISKPTMEMKNYMFNCEVGDDVY-LEDPTCKELQEKAAKLA-GKEAAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        64 ~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~~y-~~~~~~~~l~~~la~~~-g~~~~~~~~~Gs~a~~~al~~~~  137 (285)
                      .|++++||.++    +.++.+|+|.+++.+++.....+ ..++...+|.+.|++.. +.+.++|++|||+|++.|++++.
T Consensus        97 dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~AlklAR  176 (474)
T PLN02482         97 DGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLAR  176 (474)
T ss_pred             CCCEEEEecccccccccCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHH
Confidence            47888888654    45679999999999888743333 25566788999998886 46778999999999999999998


Q ss_pred             ccCCCe-EEe-cCCcceeeeccccccccc--ccc--cccce------eeeeeecCCCCCCCHHHHHHHhcccccccCCce
Q psy5413         138 DRRDSE-IIV-GDCSHIMLWEQGGASQTS--VYS--QIGRV------LMRGVTNQKDGTFDLDEMEAKFSTADNIHCAST  205 (285)
Q Consensus       138 ~~~g~~-vi~-~~~~h~~~~~~~~~~~~~--~~~--~~~g~------~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~  205 (285)
                      ..+|+. |+. ...||+.+..........  .+.  ...+.      .++.++.     .|++++++.+++    +.+++
T Consensus       177 ~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----nd~~~l~~~l~~----~~~~i  247 (474)
T PLN02482        177 AYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY-----NDLEAVKKLFEA----NKGEI  247 (474)
T ss_pred             HhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC-----CChHHHHHHHHh----CCCce
Confidence            766764 333 577898653322111000  000  00011      1112222     388999999875    34589


Q ss_pred             EEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----hhhcccCCeE--EEecccccCc--ceeEEee
Q psy5413         206 SLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----AEVCASVDTV--MFCLSKGLGA--PVGSILA  277 (285)
Q Consensus       206 ~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----~~~~~~~dv~--~~s~sK~l~~--p~gg~~~  277 (285)
                      ++|++|++++..|....+++++++|+++|++||+++|+||+++++    ....+++++.  +.+++|++++  |+|++ +
T Consensus       248 AavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~g~~ga~~~~gv~PDi~t~gK~lggG~Pigav-~  326 (474)
T PLN02482        248 AAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAYGGAQEYFGITPDLTTLGKVIGGGLPVGAY-G  326 (474)
T ss_pred             EEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCeecCcchHhHHhCCCCCEEEecchhhCCCceEEE-E
Confidence            999999999887444555899999999999999999999998843    2223333433  5677899987  88887 5


Q ss_pred             cCccccc
Q psy5413         278 GPEEFIQ  284 (285)
Q Consensus       278 ~~~~~i~  284 (285)
                      +++++++
T Consensus       327 g~~ei~~  333 (474)
T PLN02482        327 GRREIME  333 (474)
T ss_pred             EcHHHHH
Confidence            6666653

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.89  E-value=2.6e-22  Score=188.31  Aligned_cols=196  Identities=11%  Similarity=0.054  Sum_probs=152.6

Q ss_pred             cCCeeeeeccCCcC---C-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc------CC--CcEEEcCChHHHHHH
Q psy5413          64 VNIRTVDIRSDTIS---K-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA------GK--EAAIFVPSGTMGNLI  131 (285)
Q Consensus        64 ~~~~~~~~~~~~~~---~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~------g~--~~~~~~~~Gs~a~~~  131 (285)
                      .|+.+++|..+++.   . .++.+.+++.+.......|....+..+|++.+++++      +.  +.+++++|+++++..
T Consensus       144 ~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~  223 (517)
T PRK13355        144 AGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINL  223 (517)
T ss_pred             cCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHH
Confidence            56789999998884   2 466888888776655556887777899999999997      32  346888888999999


Q ss_pred             HHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413         132 AIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVC  209 (285)
Q Consensus       132 al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~  209 (285)
                      ++.+++ ++||+|+++.++|.......         ...|.+++.++.++  ++.+|++++++++++       ++++|+
T Consensus       224 ~~~~l~-~~Gd~Vli~~P~y~~y~~~~---------~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~-------~~k~i~  286 (517)
T PRK13355        224 SMSALL-DDGDEVLIPSPDYPLWTACV---------NLAGGTAVHYRCDEQSEWYPDIDDIRSKITS-------RTKAIV  286 (517)
T ss_pred             HHHHhC-CCCCEEEEcCCCCcCHHHHH---------HHCCCEEEEeecCcccCCCCCHHHHHHhcCc-------CceEEE
Confidence            999887 69999999988875543322         23478888887643  467899999999977       789999


Q ss_pred             EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcccCCeE-EEecccccC--cceeEEe
Q psy5413         210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVCASVDTV-MFCLSKGLG--APVGSIL  276 (285)
Q Consensus       210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~~~dv~-~~s~sK~l~--~p~gg~~  276 (285)
                      +++|+||| |.+++.+++++|+++|++||++||+||+|..+.          .+....-++ +.|+||.++  |.+.|++
T Consensus       287 i~nP~NPT-G~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~  365 (517)
T PRK13355        287 IINPNNPT-GALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWM  365 (517)
T ss_pred             EECCCCCC-CcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccceEEE
Confidence            99999999 999999999999999999999999999977221          111121233 589999864  4677787


Q ss_pred             e
Q psy5413         277 A  277 (285)
Q Consensus       277 ~  277 (285)
                      +
T Consensus       366 i  366 (517)
T PRK13355        366 I  366 (517)
T ss_pred             E
Confidence            7

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.89  E-value=2.6e-22  Score=182.62  Aligned_cols=201  Identities=19%  Similarity=0.281  Sum_probs=150.7

Q ss_pred             eeeeeccCCcCCCcHHHHHHHHhcc-cCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEE
Q psy5413          67 RTVDIRSDTISKPTMEMKNYMFNCE-VGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEII  145 (285)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~a~~~~~-~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi  145 (285)
                      .++||.+++.+   ..|.+++.+.+ .++..|+.++...+|++.+++++|.+.++.+++|++|+..++.+++ ++||+| 
T Consensus        21 v~iDlltds~t---~ams~~~~~a~~~gd~~Y~~~~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~la~~al~-~pGD~V-   95 (431)
T cd00617          21 VYIDLLTDSGT---GAMSDYQWAAMMLGDEAYAGSKSFYDLEDAVQDLFGFKHIIPTHQGRGAENILFSILL-KPGRTV-   95 (431)
T ss_pred             cCCCCCCCCCc---HHHHHHHHHHHHhCCCccCCCCCHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHHhC-CCCCEE-
Confidence            33455544433   44544444433 3556799889999999999999999999999999999999999887 699976 


Q ss_pred             ecCCcceeeecccccccccccccccceeeeeeecC----------CCCCCCHHHHHHHhcccccccCCceEEEEEecccC
Q psy5413         146 VGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ----------KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHN  215 (285)
Q Consensus       146 ~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n  215 (285)
                      ++++ |+..+.. .+       ...|.+.+.++.+          ..+.+|+++|+++|++.   ...++++|+++.|+|
T Consensus        96 ~~~~-~f~~~~~-~i-------~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~---~~~~~~~I~v~~p~N  163 (431)
T cd00617          96 PSNM-HFDTTRG-HI-------EANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEV---GAENIPYIVLTITNN  163 (431)
T ss_pred             ccCC-cccchHH-HH-------HhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcc---cCCCccEEEEECCcC
Confidence            4443 3332211 11       2337777766653          23559999999999862   123589999999999


Q ss_pred             CCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC-----------------hhh----hcccCCeEEEecccccCcceeE
Q psy5413         216 YCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP-----------------LAE----VCASVDTVMFCLSKGLGAPVGS  274 (285)
Q Consensus       216 ~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~-----------------~~~----~~~~~dv~~~s~sK~l~~p~gg  274 (285)
                      ++||.+++.++|++|+++|++||++||.|+++..                 +..    .....|.+++|++|.++.+.||
T Consensus       164 ~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~GG  243 (431)
T cd00617         164 TAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIGG  243 (431)
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccce
Confidence            9889999999999999999999999999999651                 111    1246889999999998889999


Q ss_pred             EeecCc-cccc
Q psy5413         275 ILAGPE-EFIQ  284 (285)
Q Consensus       275 ~~~~~~-~~i~  284 (285)
                      ++++++ ++++
T Consensus       244 ~i~~~d~~l~~  254 (431)
T cd00617         244 FLALRDDELYE  254 (431)
T ss_pred             EEEeCcHHHHH
Confidence            999876 4654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.89  E-value=2.8e-22  Score=180.14  Aligned_cols=202  Identities=17%  Similarity=0.236  Sum_probs=160.0

Q ss_pred             CeeeeeccCCcCCCcHHHHHH-HHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeE
Q psy5413          66 IRTVDIRSDTISKPTMEMKNY-MFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEI  144 (285)
Q Consensus        66 ~~~~~~~~~~~~~~~~~v~~a-~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~v  144 (285)
                      .-+|||.+++.+   +.|.++ |.....++..|+.++.+.+|++.+++++|.+.++++++|+.|+..+..+.+ ++||+|
T Consensus        38 ~v~iDLltDsgT---~aMs~~q~a~~~~GDe~yag~~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~~l~l-~pGDeV  113 (450)
T TIGR02618        38 DVYIDLLTDSGT---NAMSDKQWAGLMMGDEAYAGSRNFYHLERTVRELYGFKYVVPTHQGRGAENLLSQIAI-KPGDYV  113 (450)
T ss_pred             ceEEEcccCCCc---HHHHHHHHHHhhhcchhhcCCCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHhCC-CCcCEE
Confidence            467899998876   888888 777777888899999999999999999999999999999999887665555 689966


Q ss_pred             EecCCcceeeecccccccccccccccceeeeeeec----------CCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         145 IVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN----------QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       145 i~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                        +.++|..+.... +       ...|..++.++.          +.++.+|+++|+++|++.   +..++++|.++.++
T Consensus       114 --psn~~f~Tt~ah-I-------e~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~---~~~~~~lV~~e~t~  180 (450)
T TIGR02618       114 --PGNMYFTTTRYH-Q-------EKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEV---GADKIPYICLAVTV  180 (450)
T ss_pred             --CCceeHHHHHHH-H-------HhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccc---cCcccCceEEEEec
Confidence              456654443320 1       122555555532          345789999999999863   22356789999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-----------------Ch----hhhcccCCeEEEecccccCccee
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-----------------PL----AEVCASVDTVMFCLSKGLGAPVG  273 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-----------------~~----~~~~~~~dv~~~s~sK~l~~p~g  273 (285)
                      |..||.+++.++++++.++|++||++||.|.+|.                 ++    ..+..++|.+++|..|..++|+|
T Consensus       181 N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~G  260 (450)
T TIGR02618       181 NLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIG  260 (450)
T ss_pred             ccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCc
Confidence            9888999999999999999999999999999976                 11    23346899999999999999999


Q ss_pred             EEee-cCccccc
Q psy5413         274 SILA-GPEEFIQ  284 (285)
Q Consensus       274 g~~~-~~~~~i~  284 (285)
                      |+++ +++++++
T Consensus       261 G~l~~~d~~l~~  272 (450)
T TIGR02618       261 GFLCMNDDEMFQ  272 (450)
T ss_pred             eEEEeCCHHHHH
Confidence            9999 6777654

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK07482 hypothetical protein; Provisional

Probab=99.89  E-value=2.2e-22  Score=185.70  Aligned_cols=232  Identities=15%  Similarity=0.064  Sum_probs=155.6

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC---Cc--cCCh
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD---VY--LEDP  101 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~---~y--~~~~  101 (285)
                      |..+.++.+.+.|+..++.+++.++.|+..                  +.++.+|+|.+|+.+++....   .+  ..++
T Consensus        33 p~~i~~a~G~~l~D~dG~~ylD~~sg~~~~------------------~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~   94 (461)
T PRK07482         33 GRIVEGGEGIRITDAQGRRYIDAFAGLYCV------------------NVGYGRTEVAEAIAEQAKELAYYHTYVGHGTE   94 (461)
T ss_pred             CeeEEeeeeeEEEECCCCEEEEcccchhhh------------------cCCCCCHHHHHHHHHHHHhcCccccccccCCH
Confidence            566777888888886655555555444432                  347899999999998876421   11  2456


Q ss_pred             hHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCC-eEEe-cCCcceeeecccccccccccccccc
Q psy5413         102 TCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDS-EIIV-GDCSHIMLWEQGGASQTSVYSQIGR  171 (285)
Q Consensus       102 ~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g  171 (285)
                      ...+|.++|++...  .++++|++|||+|++.|++++...      +++ +||. ...||+.+.....++..+.|...++
T Consensus        95 ~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~  174 (461)
T PRK07482         95 ASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFD  174 (461)
T ss_pred             HHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccC
Confidence            68899999999873  567899999999999999998632      233 3443 5788987643332221122222222


Q ss_pred             ee---eeeeecCCCC-------------CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHH
Q psy5413         172 VL---MRGVTNQKDG-------------TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQ  235 (285)
Q Consensus       172 ~~---~~~~~~~~~~-------------~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~  235 (285)
                      ..   +..++.+...             ..+++++++.+...   +.+++++|++|++++..|..+.|.+++++|+++|+
T Consensus       175 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~  251 (461)
T PRK07482        175 LPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAE---GPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLK  251 (461)
T ss_pred             CCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhc---CCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHH
Confidence            11   1122221110             01467788877531   23479999999999887555578899999999999


Q ss_pred             HcCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecC
Q psy5413         236 EHNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGP  279 (285)
Q Consensus       236 ~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~  279 (285)
                      +||+++|+||+++++     ....++.++.  +.+++|++++   |+++++.++
T Consensus       252 ~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~  305 (461)
T PRK07482        252 KYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGE  305 (461)
T ss_pred             HhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEEEccccccCccccceeeecH
Confidence            999999999998844     2344555555  6777899976   788877654

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.89  E-value=6.2e-22  Score=179.75  Aligned_cols=222  Identities=17%  Similarity=0.181  Sum_probs=152.1

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeecc----CCcCCCcHHHHHHHHhcccCC---CCccC
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRS----DTISKPTMEMKNYMFNCEVGD---DVYLE   99 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~a~~~~~~~~---~~y~~   99 (285)
                      |..+.++.+.+.|+..                      |++++||.+    .+.++.+|++.+++.+++...   .....
T Consensus        14 ~~~~~~~~G~~~~d~d----------------------G~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~   71 (389)
T PRK01278         14 DLAFERGEGVWLIDED----------------------GERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNLYR   71 (389)
T ss_pred             CceEEeeecCEEEECC----------------------CCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCccccccC
Confidence            5566677777777643                      556677665    355779999999999887531   11124


Q ss_pred             ChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccc---cCCC----eEEe-cCCcceeeecccccccccccccccc
Q psy5413         100 DPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCD---RRDS----EIIV-GDCSHIMLWEQGGASQTSVYSQIGR  171 (285)
Q Consensus       100 ~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~---~~g~----~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g  171 (285)
                      ++...+++++++++.+.+.++|++||++|++.+++++..   .+|+    +|++ ...||+++.........+.+...++
T Consensus        72 ~~~~~~la~~l~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~  151 (389)
T PRK01278         72 IPEQERLAERLVENSFADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFG  151 (389)
T ss_pred             ChHHHHHHHHHHhhCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCC
Confidence            667889999999998878899999999999999998742   2343    5655 5677877654332221111110000


Q ss_pred             e---eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413         172 V---LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL  248 (285)
Q Consensus       172 ~---~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~  248 (285)
                      .   .+..++     ..|++++++.+++       ++++|++++++|++|..+++.+++++|+++|++||+++|+||+|+
T Consensus       152 ~~~~~~~~~~-----~~d~~~l~~~l~~-------~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~  219 (389)
T PRK01278        152 PLVPGFDQVP-----FGDIEALKAAITP-------NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQC  219 (389)
T ss_pred             CCCCCceEeC-----CCCHHHHHHhhCC-------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence            0   001111     2489999999976       799999999999885589999999999999999999999999988


Q ss_pred             Chhh-----hcccCCeE--EEecccccCc--ceeEEeecCcccc
Q psy5413         249 PLAE-----VCASVDTV--MFCLSKGLGA--PVGSILAGPEEFI  283 (285)
Q Consensus       249 ~~~~-----~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i  283 (285)
                      ++..     ..+..++.  +.+++|.+++  |.|+ ++++++++
T Consensus       220 g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G~~ig~-~~~~~~~~  262 (389)
T PRK01278        220 GMGRTGKLFAHEWAGVTPDIMAVAKGIGGGFPLGA-CLATEEAA  262 (389)
T ss_pred             CCCcCCcceeecccCCCCCEEEEehhccCCcceEE-EEEcHHHH
Confidence            4421     11122222  5688999976  5555 45555554

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.89  E-value=4.2e-22  Score=182.57  Aligned_cols=210  Identities=14%  Similarity=0.086  Sum_probs=144.3

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCCC-CccCChhHHHHHHHHHhHc-CCCcEEEcCChHHHHHHHHHHccc
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGDD-VYLEDPTCKELQEKAAKLA-GKEAAIFVPSGTMGNLIAIMTHCD  138 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~-~y~~~~~~~~l~~~la~~~-g~~~~~~~~~Gs~a~~~al~~~~~  138 (285)
                      |++++||.++    +.++.||+|.+|+.+++.... ....++...++.++|++.. +.+.++|++|||+|++.|++++..
T Consensus        52 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~  131 (428)
T PRK12389         52 GNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVLYGTPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARA  131 (428)
T ss_pred             CCEEEEccccccccccCCCCHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHHH
Confidence            4555555433    347799999999998876422 2235677889999998876 456789999999999999999986


Q ss_pred             cCCCe-EEe-cCCcceeeeccccccccccccc----ccc------eeeeeeecCCCCCCCHHHHHHHhcccccccCCceE
Q psy5413         139 RRDSE-IIV-GDCSHIMLWEQGGASQTSVYSQ----IGR------VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       139 ~~g~~-vi~-~~~~h~~~~~~~~~~~~~~~~~----~~g------~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                      .+|+. |+. ...||+.+...........+..    ..+      ..+..++.     .|++.+++.+++    +.++++
T Consensus       132 ~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~----~~~~va  202 (428)
T PRK12389        132 YTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPF-----NDIEALKEALDK----WGDEVA  202 (428)
T ss_pred             hhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCC-----CCHHHHHHHHHh----cCCcEE
Confidence            66654 333 5778987643222210000000    001      11122222     378999998875    334799


Q ss_pred             EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----hhcccCCeE--EEecccccCc--ceeEEeec
Q psy5413         207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----EVCASVDTV--MFCLSKGLGA--PVGSILAG  278 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~  278 (285)
                      +|++|++++..|....|.+++++|+++|++||+++|+||+++++.    ...++.++.  +.+++|++++  |+|+++ +
T Consensus       203 avi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~~gv~PDivt~gK~lggG~Pi~av~-~  281 (428)
T PRK12389        203 AVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLGVEPDLTALGKIIGGGLPIGAYG-G  281 (428)
T ss_pred             EEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcchhhHHhCCCCCeeeechhhcCCCceeEEe-E
Confidence            999999999874456678999999999999999999999998551    122334444  5788899987  888875 5


Q ss_pred             Cccccc
Q psy5413         279 PEEFIQ  284 (285)
Q Consensus       279 ~~~~i~  284 (285)
                      ++++++
T Consensus       282 ~~~i~~  287 (428)
T PRK12389        282 RKDIME  287 (428)
T ss_pred             HHHHHh
Confidence            555543

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.89  E-value=3.9e-22  Score=181.25  Aligned_cols=200  Identities=18%  Similarity=0.173  Sum_probs=151.9

Q ss_pred             CCeeeeeccCCc-CC-CcHHHHHHHHhcccCC-CCc-------cCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTI-SK-PTMEMKNYMFNCEVGD-DVY-------LEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~-~~-~~~~v~~a~~~~~~~~-~~y-------~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~  134 (285)
                      |+++++|.++++ +. .+|++++++.+..... ..|       +..+.+.++|+.+++++|.+.+++++||++|+..++.
T Consensus        37 g~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~~~~ii~~~~~~a~~~~~~  116 (393)
T TIGR01822        37 GREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLGTEDTILYASCFDANGGLFE  116 (393)
T ss_pred             CceEEEeeCCCccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHH
Confidence            678899998886 44 4789998887665431 122       2345679999999999999988888999999999988


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      +++ ++||+|++++++|.+......+.         +...+.++     .+|++++++++++... ...++++|++++++
T Consensus       117 ~l~-~~gd~vi~~~~~~~s~~~~~~~~---------~~~~~~~~-----~~d~~~l~~~i~~~~~-~~~~~~~v~~~~v~  180 (393)
T TIGR01822       117 TLL-GAEDAIISDALNHASIIDGVRLC---------KAKRYRYA-----NNDMADLEAQLKEARA-AGARHRLIATDGVF  180 (393)
T ss_pred             HhC-CCCCEEEEeccccHHHHHHHHhc---------CCceEEeC-----CCCHHHHHHHHHhhhh-cCCCceEEEEeCCc
Confidence            876 69999999999887654322222         33332222     3699999999975211 12268899999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh-----------hhcccCCeEEEecccccCcceeEEeecCccc
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA-----------EVCASVDTVMFCLSKGLGAPVGSILAGPEEF  282 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~-----------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~  282 (285)
                      |++ |.+.|   +++|+++|++||+++|+||+|. +..           ....+.|+++.|+||+++++++|++++++++
T Consensus       181 ~~t-G~~~~---l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~r~G~~~~~~~~  256 (393)
T TIGR01822       181 SMD-GVIAP---LDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGASGGFTTARKEV  256 (393)
T ss_pred             cCC-CCcCC---HHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCCCcEEEEeCHHH
Confidence            999 89999   9999999999999999999985 211           1123568889999999998889999988876


Q ss_pred             cc
Q psy5413         283 IQ  284 (285)
Q Consensus       283 i~  284 (285)
                      ++
T Consensus       257 ~~  258 (393)
T TIGR01822       257 VE  258 (393)
T ss_pred             HH
Confidence            54

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.88  E-value=5.3e-22  Score=182.71  Aligned_cols=225  Identities=18%  Similarity=0.187  Sum_probs=154.0

Q ss_pred             Ccccccccc-ccccccCCCCCccceeeccCCccccccccCCeeeeeccC----CcCCCcHHHHHHHHhcccCC---CCcc
Q psy5413          27 PALVESTPL-SRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSD----TISKPTMEMKNYMFNCEVGD---DVYL   98 (285)
Q Consensus        27 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~---~~y~   98 (285)
                      |..+.++.+ .++|+..                      |++++||.++    +.++++|+|.+|+.+++...   ..+.
T Consensus        64 ~~~~~~~~G~~~l~D~d----------------------G~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~~~~~~  121 (459)
T PRK11522         64 GAVEWQAGGLNTLVDTQ----------------------GQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL  121 (459)
T ss_pred             CeeEEeccCeEEEEECC----------------------CCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCccccccc
Confidence            445556666 6777654                      4555555443    44779999999999887632   2234


Q ss_pred             CChhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHccccCC---C-eEEe-cCCcceeeecccccccccccccccc
Q psy5413          99 EDPTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDRRD---S-EIIV-GDCSHIMLWEQGGASQTSVYSQIGR  171 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~~g---~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g  171 (285)
                      .++...+|.++|+++..  .+.++|++|||+|++.|++++....+   + .|+. ...||+.+...........|...++
T Consensus       122 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~  201 (459)
T PRK11522        122 LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFM  201 (459)
T ss_pred             CCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCC
Confidence            56778899999999864  45689999999999999999875443   3 3443 5788987754333321122221111


Q ss_pred             ee---eeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413         172 VL---MRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL  248 (285)
Q Consensus       172 ~~---~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~  248 (285)
                      ..   +..+|.     .|++++++.++.. ..+++++++|++|++++..|..+.|+++|++++++|++||+++|+||+++
T Consensus       202 ~~~~~~~~~~~-----~d~~~l~~~l~~~-~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~t  275 (459)
T PRK11522        202 PLLPGFRHVPF-----GNIEAMRTALSEC-KKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQT  275 (459)
T ss_pred             CCCCCCcccCC-----CCHHHHHHHHHHh-hccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEecccee
Confidence            11   112222     2788888888642 12345799999999999885556778999999999999999999999987


Q ss_pred             Ch-----hhhcccCCeE--EEecccccCc---ceeEEeecC
Q psy5413         249 PL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGP  279 (285)
Q Consensus       249 ~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~  279 (285)
                      ++     ....++.++.  +.+++|.+++   |+|++++++
T Consensus       276 G~GRtG~~~a~e~~gv~PDivt~gK~lggG~~Pigav~~~~  316 (459)
T PRK11522        276 GMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATE  316 (459)
T ss_pred             cCCccchhhhhhccCCCCCEEEechhhhCCCccceeEEEcH
Confidence            43     2233444444  5688899986   888888764

>PRK08960 hypothetical protein; Provisional

Probab=99.88  E-value=1e-21  Score=178.18  Aligned_cols=202  Identities=15%  Similarity=0.063  Sum_probs=157.1

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~~~al~  134 (285)
                      ++++++|..+.+.. +++.+.+++.+.... ...|.......++++.++++++        .+.+++++|+++|+..++.
T Consensus        31 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~  110 (387)
T PRK08960         31 GHDVIHLEIGEPDFTTAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASS  110 (387)
T ss_pred             CCCeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHH
Confidence            56789999888875 577899998876653 3467766778899999999863        2446899999999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      +++ .+||+|+++++.|.......         ...|.+++.++.+.+  +.+|++++++++++       +++++++++
T Consensus       111 ~~~-~~gd~vlv~~p~y~~~~~~~---------~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-------~~~~i~i~~  173 (387)
T PRK08960        111 LLV-DPGKHWLLADPGYPCNRHFL---------RLVEGAAQLVPVGPDSRYQLTPALVERHWNA-------DTVGALVAS  173 (387)
T ss_pred             Hhc-CCCCEEEEcCCCCcchHHHH---------HhcCCeEEEEecCcccCCCCCHHHHHHHhCc-------cceEEEEEC
Confidence            887 69999999988876543322         233677777776433  46899999999887       678999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------hhc-ccCCe-EEEecccccCc--ceeEEeecCccc
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------EVC-ASVDT-VMFCLSKGLGA--PVGSILAGPEEF  282 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~-~~~dv-~~~s~sK~l~~--p~gg~~~~~~~~  282 (285)
                      |+||| |.+++.+++++|+++|++||+++|+||+|..+.      .+. ...++ ++.|+||.++.  .+.|++++++++
T Consensus       174 p~NPt-G~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~  252 (387)
T PRK08960        174 PANPT-GTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFGMTGWRLGWLVAPPAA  252 (387)
T ss_pred             CCCCC-CcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccCCEEEEeecccccCCcccEEEEEEcCHHH
Confidence            99999 999999999999999999999999999987321      111 12244 48999998864  678899888877


Q ss_pred             cc
Q psy5413         283 IQ  284 (285)
Q Consensus       283 i~  284 (285)
                      ++
T Consensus       253 ~~  254 (387)
T PRK08960        253 VP  254 (387)
T ss_pred             HH
Confidence            64

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.88  E-value=8e-22  Score=179.86  Aligned_cols=223  Identities=18%  Similarity=0.210  Sum_probs=150.1

Q ss_pred             CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeecc----CCcCCCcHHHHHHHHhcccCC---CCcc
Q psy5413          26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRS----DTISKPTMEMKNYMFNCEVGD---DVYL   98 (285)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~a~~~~~~~~---~~y~   98 (285)
                      .|..+.++.+.+.|+..                      |++++||.+    .+.++.||+|.+|+.+++...   ....
T Consensus        21 ~~~~~~~~~G~~~~d~d----------------------G~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~   78 (406)
T PRK12381         21 APFIPVRGEGSRLWDQQ----------------------GKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGNGY   78 (406)
T ss_pred             CCceEEEeecCEEEeCC----------------------CCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccccCcc
Confidence            35566677778888754                      445566654    355789999999999887531   1112


Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcccc------CC-CeEE-ecCCcceeeeccccccccccccccc
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDR------RD-SEII-VGDCSHIMLWEQGGASQTSVYSQIG  170 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~------~g-~~vi-~~~~~h~~~~~~~~~~~~~~~~~~~  170 (285)
                      .++...+++++++++.+.+.++|++||++|++.|++++...      ++ ..|+ ....||+.+.....+...+.+...+
T Consensus        79 ~~~~~~~la~~l~~~~~~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~  158 (406)
T PRK12381         79 TNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDF  158 (406)
T ss_pred             CCHHHHHHHHHHHhhCCCCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCC
Confidence            35668899999999988888999999999999999997533      13 3344 3678898875332222112222111


Q ss_pred             cee---eeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeee-CCHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413         171 RVL---MRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTV-LPMQWLRELKARCQEHNIPVHMDGA  246 (285)
Q Consensus       171 g~~---~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~-~~~~~l~~i~~la~~~gi~li~Dea  246 (285)
                      +..   +..++     ..|++++++.+++       ++++|++|+.++.. |.. .|.+++++|+++|++||+++|+||+
T Consensus       159 ~~~~~~~~~~~-----~~d~~~l~~~l~~-------~~aaviiEPv~~~g-g~~~~~~~~l~~l~~l~~~~~~llI~DEv  225 (406)
T PRK12381        159 APLPPDIRHAA-----YNDLNSASALIDD-------QTCAVIVEPIQGEG-GVIPADKAFLQGLRELCDRHNALLIFDEV  225 (406)
T ss_pred             CCCCCCeeEeC-----CCCHHHHHHhccC-------CeeEEEEeCCcCCC-CCcCCCHHHHHHHHHHHHHcCCEEEEcch
Confidence            111   11222     2488999999976       79999999776654 554 4799999999999999999999999


Q ss_pred             cCChh-----hhcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413         247 RLPLA-----EVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       247 ~~~~~-----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      |+++.     ...+..++.  +.+++|++++  |+|++ +.++++++
T Consensus       226 ~tG~gr~G~~~~~~~~~v~pDi~t~sK~l~gG~~ig~~-~~~~~~~~  271 (406)
T PRK12381        226 QTGVGRTGELYAYMHYGVTPDVLTTAKALGGGFPIGAM-LTTEKCAS  271 (406)
T ss_pred             hhCCCCCcchhhhHhhCCCCCEEEehhhhhCCCceEEE-EEcHHHHh
Confidence            87431     111222222  5788999966  65554 45565543

>PRK07179 hypothetical protein; Provisional

Probab=99.88  E-value=6.4e-22  Score=180.71  Aligned_cols=193  Identities=17%  Similarity=0.279  Sum_probs=148.9

Q ss_pred             CCeeeeeccCCcCC--CcHHHHHHHHhcccC-------CCCcc-CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK--PTMEMKNYMFNCEVG-------DDVYL-EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~-------~~~y~-~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~  134 (285)
                      |..+++|.+.++-.  .+|++++++.++...       ...+. ..+...+|++.+++++|.+.++++++|++|++.+++
T Consensus        53 g~~~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~sG~~An~~~l~  132 (407)
T PRK07179         53 GPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFESCLLCQSGWAANVGLLQ  132 (407)
T ss_pred             CCcEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH
Confidence            56788988765554  689999998887642       11222 335689999999999999999999999999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      ++. .+|+.++++...|.+.......         .+.+++.++     ..|+++++++++++      ++++|++++++
T Consensus       133 ~l~-~~g~~v~~~~~~h~s~~~~~~~---------~g~~~~~~~-----~~d~~~l~~~l~~~------~~~lV~v~~v~  191 (407)
T PRK07179        133 TIA-DPNTPVYIDFFAHMSLWEGVRA---------AGAQAHPFR-----HNDVDHLRRQIERH------GPGIIVVDSVY  191 (407)
T ss_pred             HhC-CCCCEEEEECCcCHHHHHHHHH---------CCCeEEEec-----CCCHHHHHHHHHhc------CCeEEEECCCC
Confidence            987 5889898888888666432222         255554443     25999999999752      47899999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Ch--------h-h--hcccCCeEEEecccccCcceeEEeecCccc
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PL--------A-E--VCASVDTVMFCLSKGLGAPVGSILAGPEEF  282 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~--------~-~--~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~  282 (285)
                      |++ |.+.|   +++|+++|++||+++|+||+|+ +.        . .  ....+|+++.|+||++++ ++|++++++++
T Consensus       192 n~t-G~i~p---l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~-~~G~l~~~~~~  266 (407)
T PRK07179        192 STT-GTIAP---LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAG-RAGIITCPREL  266 (407)
T ss_pred             CCC-Ccccc---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhc-cCeEEEeCHHH
Confidence            999 99999   9999999999999999999987 11        1 1  112458889999999987 47778877766


Q ss_pred             c
Q psy5413         283 I  283 (285)
Q Consensus       283 i  283 (285)
                      +
T Consensus       267 ~  267 (407)
T PRK07179        267 A  267 (407)
T ss_pred             H
Confidence            4

>PRK05965 hypothetical protein; Provisional

Probab=99.88  E-value=6.8e-22  Score=182.36  Aligned_cols=234  Identities=15%  Similarity=0.144  Sum_probs=156.1

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC----Cc-cCCh
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD----VY-LEDP  101 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~----~y-~~~~  101 (285)
                      |..+.++.+.+.|+..++.+++.+..|+..                  +.++.||+|.+|+.+++....    .+ ..++
T Consensus        29 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~   90 (459)
T PRK05965         29 VTVLASAKGATLTDASGHQLLDAFAGLWCV------------------NVGYGQESIVEAAAEQMRELPYATGYFHFGSE   90 (459)
T ss_pred             CceEEeeeEeEEEECCCCEEEECcccHHhc------------------cCCCCCHHHHHHHHHHHHhcCCcccccccCCH
Confidence            556777788888876666555555444432                  337899999999998876421    22 2356


Q ss_pred             hHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCC-eEE-ecCCcceeeecccccccccccccccc
Q psy5413         102 TCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDS-EII-VGDCSHIMLWEQGGASQTSVYSQIGR  171 (285)
Q Consensus       102 ~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~-~vi-~~~~~h~~~~~~~~~~~~~~~~~~~g  171 (285)
                      ...+|.++|++.+.  .+.++|++|||+|++.|++++...      +++ +|| ....||+.+.....+...+.+...++
T Consensus        91 ~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~  170 (459)
T PRK05965         91 PAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFD  170 (459)
T ss_pred             HHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccC
Confidence            67899999999873  567899999999999999998643      233 344 36788987743222221122222222


Q ss_pred             e---eeeeeecCC--C--CCCC--------HHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH
Q psy5413         172 V---LMRGVTNQK--D--GTFD--------LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE  236 (285)
Q Consensus       172 ~---~~~~~~~~~--~--~~~d--------~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~  236 (285)
                      .   .+..++.+.  .  ...|        ++++++.|+..   +.+++++|++|++++..|..+.|.+++++|+++|++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~---~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~  247 (459)
T PRK05965        171 LPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAEL---GADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRE  247 (459)
T ss_pred             CCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhc---CCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHH
Confidence            1   112222211  0  0113        35677777641   224899999999999885667788999999999999


Q ss_pred             cCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecCccc
Q psy5413         237 HNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPEEF  282 (285)
Q Consensus       237 ~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~  282 (285)
                      ||+++|+||+++++     ....++.++.  +.+++|++++   |+++++.. +++
T Consensus       248 ~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~-~~i  302 (459)
T PRK05965        248 LGILFVADEVITGFGRTGPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMS-DHV  302 (459)
T ss_pred             cCCEEEEechhccCccCchhhhHhhcCCCCCeEEechhhccCCcceeEEEEc-HHH
Confidence            99999999998843     3344555665  7777899987   78877654 444

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.88  E-value=9.8e-22  Score=179.85  Aligned_cols=212  Identities=17%  Similarity=0.194  Sum_probs=146.9

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccC---CCCccCChhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHH
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVG---DDVYLEDPTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMT  135 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~---~~~y~~~~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~  135 (285)
                      |++++||.++    +.+++||+|.+|+.+++..   ...|..++...++.++|++++.  .+.++|++|||+|++.|+++
T Consensus        74 G~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~Alkl  153 (442)
T TIGR03372        74 GNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKL  153 (442)
T ss_pred             CCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHH
Confidence            6777777666    6688999999999988763   2233456778899999999874  35679999999999999999


Q ss_pred             ccccC---CC-eEEe-cCCcceeeecccccccccccccccce---eeeeeecCCCCCCCHHHHHHHhcccccccCCceEE
Q psy5413         136 HCDRR---DS-EIIV-GDCSHIMLWEQGGASQTSVYSQIGRV---LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       136 ~~~~~---g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                      +....   |+ .||. ...||+.+.....++..+.+...++.   .+..+|.     .|.+++++.++.. ..+++++++
T Consensus       154 Ar~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~-----~d~~~~~~~l~~~-~~~~~~vAa  227 (442)
T TIGR03372       154 AKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAF-----GDIEAMLKALNEC-KKTGDDVAA  227 (442)
T ss_pred             HHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCC-----CCHHHHHHHHHHH-hcCCCcEEE
Confidence            87542   44 3443 57789887543333211122111111   1223332     2677887777531 123458999


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEee
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILA  277 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~  277 (285)
                      |++|+.++..|-...|+++|++++++|++||+++|+||+++++     ....++.++.  +.+++|.+++   |+|+++.
T Consensus       228 vIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lg~G~~Pigavv~  307 (442)
T TIGR03372       228 IILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLAKALGGGVMPIGATIA  307 (442)
T ss_pred             EEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeeeehhhhcCCcccceEEEe
Confidence            9999999988555667999999999999999999999998743     2233344443  5668899986   7888775


Q ss_pred             cCcccc
Q psy5413         278 GPEEFI  283 (285)
Q Consensus       278 ~~~~~i  283 (285)
                      + ++++
T Consensus       308 ~-~~i~  312 (442)
T TIGR03372       308 T-EAVF  312 (442)
T ss_pred             c-HHHH
Confidence            4 5544

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.88  E-value=9.4e-22  Score=179.40  Aligned_cols=202  Identities=17%  Similarity=0.155  Sum_probs=153.8

Q ss_pred             CCeeeeeccCCcC--CCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc----CC-----CcEEEcCChHHHHHH
Q psy5413          65 NIRTVDIRSDTIS--KPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA----GK-----EAAIFVPSGTMGNLI  131 (285)
Q Consensus        65 ~~~~~~~~~~~~~--~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~----g~-----~~~~~~~~Gs~a~~~  131 (285)
                      ....++|..+++.  .+++.+.+++.+....  ...|....+..+|++.+++++    |.     +.+++++|+++++..
T Consensus        38 ~~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~  117 (405)
T PRK06207         38 PGRPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFL  117 (405)
T ss_pred             CCCceecCCcCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHH
Confidence            4567888877765  3667888888766543  245665556777888877765    53     457899999999999


Q ss_pred             HHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC-----CCCCCCHHHHHHHhcccccccCCceE
Q psy5413         132 AIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-----KDGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       132 al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                      ++.+++ .+||+|++..++|.....   ..      ...|.+++.++.+     +++.+|+++|++++++       +++
T Consensus       118 ~~~~l~-~~Gd~Vlv~~P~y~~~~~---~~------~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~-------~~k  180 (405)
T PRK06207        118 AVAATV-ARGDKVAIVQPDYFANRK---LV------EFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKA-------GVR  180 (405)
T ss_pred             HHHHhc-CCCCEEEEeCCCchhHHH---HH------HHcCCEEEEEeccccCcccCCCcCHHHHHHhhhh-------cCe
Confidence            999887 699999998888754433   22      3447888877763     2466899999999977       689


Q ss_pred             EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc---ccCC--eEEEecccccC--cce
Q psy5413         207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC---ASVD--TVMFCLSKGLG--APV  272 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~---~~~d--v~~~s~sK~l~--~p~  272 (285)
                      +|++++|+||| |.+++.+++++|+++|++||++||+||+|..+.       .+.   ...+  +++.|+||.++  |.+
T Consensus       181 ~v~l~~P~NPT-G~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlR  259 (405)
T PRK06207        181 VFLFSNPNNPA-GVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYR  259 (405)
T ss_pred             EEEECCCCCCC-CcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccc
Confidence            99999999999 999999999999999999999999999987321       111   1122  44999999987  477


Q ss_pred             eEEeecCccccc
Q psy5413         273 GSILAGPEEFIQ  284 (285)
Q Consensus       273 gg~~~~~~~~i~  284 (285)
                      .|++++++++++
T Consensus       260 iG~ii~~~~l~~  271 (405)
T PRK06207        260 LGVAFGSPAIID  271 (405)
T ss_pred             eEEEEcCHHHHH
Confidence            889998887764

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.88  E-value=1.8e-21  Score=177.27  Aligned_cols=202  Identities=15%  Similarity=0.127  Sum_probs=153.5

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccCCCCcc-CChhHHHHHHHHHhHcC--------C-CcEEEcCChHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVGDDVYL-EDPTCKELQEKAAKLAG--------K-EAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~-~~~~~~~l~~~la~~~g--------~-~~~~~~~~Gs~a~~~al  133 (285)
                      ++.+++|..+.+.. +.+.+.+++.+.......|+ +.....+|++.++++++        . +.+++++|+++++..++
T Consensus        31 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~  110 (399)
T PRK07681         31 GHKMIDLSIGNPDMPPADFVREEMVHTANQKESYGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLP  110 (399)
T ss_pred             CCCeEEeCCCCCCCCCCHHHHHHHHHHHhccccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHH
Confidence            45789999888765 56688888876543323333 23567889999998863        1 34678888899999999


Q ss_pred             HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413         134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLVCVE  211 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~i~  211 (285)
                      .+++ ++||.|++++++|......   .      ...|.+++.++.+++  +.+|++++++++.+       ++++|+++
T Consensus       111 ~~~~-~~Gd~Vlv~~P~y~~~~~~---~------~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~-------~~k~v~l~  173 (399)
T PRK07681        111 MVYA-NPGDIILVPDPGYTAYETG---I------QMAGATSYYMPLKKENDFLPDLELIPEEIAD-------KAKMMILN  173 (399)
T ss_pred             HHhC-CCCCEEEECCCCccchHHH---H------HhcCCEEEEEecCCCCCCcCCHHHHHHhccc-------cceEEEEe
Confidence            8887 5999999998887544332   2      345889999887543  45799999998876       78999999


Q ss_pred             cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hh---cccCC--eEEEecccccCc--ceeEEee
Q psy5413         212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EV---CASVD--TVMFCLSKGLGA--PVGSILA  277 (285)
Q Consensus       212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~---~~~~d--v~~~s~sK~l~~--p~gg~~~  277 (285)
                      +|+||| |.+++.+++++|+++|++||++||+||+|..+.       .+   ....+  +++.|+||.++.  .+.|+++
T Consensus       174 ~P~NPT-G~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i  252 (399)
T PRK07681        174 FPGNPV-PAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMI  252 (399)
T ss_pred             CCCCCc-CcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEe
Confidence            999999 999999999999999999999999999987221       11   11222  448999998864  6778888


Q ss_pred             cCccccc
Q psy5413         278 GPEEFIQ  284 (285)
Q Consensus       278 ~~~~~i~  284 (285)
                      .++++++
T Consensus       253 ~~~~l~~  259 (399)
T PRK07681        253 GNEEIVR  259 (399)
T ss_pred             cCHHHHH
Confidence            8887764

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.88  E-value=1.8e-21  Score=174.96  Aligned_cols=193  Identities=17%  Similarity=0.273  Sum_probs=150.7

Q ss_pred             CCcHHHHHHHHhcccC--CC-------CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecC
Q psy5413          78 KPTMEMKNYMFNCEVG--DD-------VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGD  148 (285)
Q Consensus        78 ~~~~~v~~a~~~~~~~--~~-------~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~  148 (285)
                      ...+++++++.+...+  ..       ....++...++++.+++++|.+.+++++||++++..++.+++ ++|++|+++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~~-~~gd~Vl~~~   90 (361)
T cd06452          12 RLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLC-EKGDWVVVDG   90 (361)
T ss_pred             CCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhc-CCCCEEEEcC
Confidence            3578889998876632  11       112346789999999999999888999999999999999887 6899999988


Q ss_pred             CcceeeecccccccccccccccceeeeeeecCCCC--CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHH
Q psy5413         149 CSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDG--TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW  226 (285)
Q Consensus       149 ~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~  226 (285)
                      ..|.+....   .      ...|.+++.++.++++  .+|++++++++++..+....++++|++++|+|++ |.+.+   
T Consensus        91 ~~~~~~~~~---~------~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~t-G~~~~---  157 (361)
T cd06452          91 LAHYTSYVA---A------ERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNY-GNLHD---  157 (361)
T ss_pred             CcchHHHHH---H------HhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCC-eeecc---
Confidence            887666432   2      3458899888876543  7899999999864211111268999999999999 89988   


Q ss_pred             HHHHHHHHHHcCCeEEEeCccC----ChhhhcccCCeEEEecccccCc-ceeEEeecCccccc
Q psy5413         227 LRELKARCQEHNIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGA-PVGSILAGPEEFIQ  284 (285)
Q Consensus       227 l~~i~~la~~~gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~-p~gg~~~~~~~~i~  284 (285)
                      +++|+++|+++|+++|+|++|.    .......+.|+++.|+||++++ +++|+++.++++++
T Consensus       158 ~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~  220 (361)
T cd06452         158 AKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWAD  220 (361)
T ss_pred             HHHHHHHHHHcCCeEEEECCcccCCcCCCHHHcCCCEEEecCCccccCCCCeEEEEECHHHHH
Confidence            9999999999999999999988    2223334689999999999976 45778888777654

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PLN00175 aminotransferase family protein; Provisional

Probab=99.88  E-value=8.5e-22  Score=180.03  Aligned_cols=201  Identities=15%  Similarity=0.102  Sum_probs=155.8

Q ss_pred             CeeeeeccCCcCCC-cHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcC----C----C-cEEEcCChHHHHHHHHH
Q psy5413          66 IRTVDIRSDTISKP-TMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAG----K----E-AAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        66 ~~~~~~~~~~~~~~-~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g----~----~-~~~~~~~Gs~a~~~al~  134 (285)
                      ..+++|..+.+..+ .+.+.+++.+.... ...|+...+..+|++.++++++    .    + .+++++|+++|+..++.
T Consensus        54 ~~~i~l~~G~P~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~  133 (413)
T PLN00175         54 HGAINLGQGFPNFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATIL  133 (413)
T ss_pred             CCeEecCCCCCCCCCCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHH
Confidence            46799999988875 55788887766553 4567777778889999988763    2    2 36788888999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      +++ .+||+|++++++|......   .      ...|.+++.++.. +++.+|+++|++.+.+       ++++|++++|
T Consensus       134 ~l~-~~gd~Vlv~~P~y~~~~~~---~------~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~-------~~k~i~i~~p  196 (413)
T PLN00175        134 GLI-NPGDEVILFAPFYDSYEAT---L------SMAGAKIKTVTLRPPDFAVPEDELKAAFTS-------KTRAILINTP  196 (413)
T ss_pred             HhC-CCCCEEEEeCCCchhHHHH---H------HHcCCEEEEEECCcccCCCCHHHHHHhcCc-------CceEEEecCC
Confidence            877 6999999988877544321   1      2448888888874 3467899999999977       7899999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---------hhcc--cCCeEEEecccccCc--ceeEEeecCc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---------EVCA--SVDTVMFCLSKGLGA--PVGSILAGPE  280 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~~--~~dv~~~s~sK~l~~--p~gg~~~~~~  280 (285)
                      +||| |.+++.+++++|+++|++||+++|+||+|..+.         .+..  ...+++.|+||.++.  .+.|++++++
T Consensus       197 ~NPt-G~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~  275 (413)
T PLN00175        197 HNPT-GKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP  275 (413)
T ss_pred             CCCC-CcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCH
Confidence            9999 899999999999999999999999999987221         1111  112448999999874  6778888888


Q ss_pred             cccc
Q psy5413         281 EFIQ  284 (285)
Q Consensus       281 ~~i~  284 (285)
                      ++++
T Consensus       276 ~l~~  279 (413)
T PLN00175        276 HLTW  279 (413)
T ss_pred             HHHH
Confidence            7654

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.88  E-value=2.1e-21  Score=178.23  Aligned_cols=196  Identities=13%  Similarity=0.085  Sum_probs=151.0

Q ss_pred             CCeeeeeccCCcC-----CCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcCC--------CcEEEcCChHHHH
Q psy5413          65 NIRTVDIRSDTIS-----KPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAGK--------EAAIFVPSGTMGN  129 (285)
Q Consensus        65 ~~~~~~~~~~~~~-----~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~--------~~~~~~~~Gs~a~  129 (285)
                      ++++++|..+.+.     ...+++.+++.+.+..  ...|.......++++.++++++.        +.+++++|+++|+
T Consensus        51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al  130 (430)
T PLN00145         51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAI  130 (430)
T ss_pred             CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHH
Confidence            5688999998875     2466888888876543  34677666789999999999743        4468999999999


Q ss_pred             HHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeec--CCCCCCCHHHHHHHhcccccccCCceEE
Q psy5413         130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN--QKDGTFDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       130 ~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                      ..++.++. .+||+|+++.++|.......         ...|.+++.++.  ..++.+|++++++.+++       ++++
T Consensus       131 ~l~~~~l~-~~Gd~Vlv~~P~y~~y~~~~---------~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~  193 (430)
T PLN00145        131 EIIMSVLA-QPGANILLPRPGYPLYEARA---------VFSGLEVRHFDLLPERGWEVDLEGVEALADE-------NTVA  193 (430)
T ss_pred             HHHHHHhc-CCCCEEEEcCCCCccHHHHH---------HHcCCEEEEeeCCcccCCcCCHHHHHHHhCc-------CceE
Confidence            99999987 69999999988765433222         233666666654  23567899999999987       7899


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------h---hcccCCeE-EEecccccCc--ceeE
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------E---VCASVDTV-MFCLSKGLGA--PVGS  274 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~---~~~~~dv~-~~s~sK~l~~--p~gg  274 (285)
                      +++++|+||| |.+++.+++++|+++|++||+++|+||+|..+.       .   +.....++ +.|+||.++.  .+.|
T Consensus       194 i~i~~P~NPt-G~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG  272 (430)
T PLN00145        194 MVIINPNNPC-GSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLG  272 (430)
T ss_pred             EEEeCCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeEE
Confidence            9999999999 999999999999999999999999999987221       1   11222344 9999998555  6777


Q ss_pred             Eeec
Q psy5413         275 ILAG  278 (285)
Q Consensus       275 ~~~~  278 (285)
                      +++.
T Consensus       273 ~iv~  276 (430)
T PLN00145        273 WIAT  276 (430)
T ss_pred             EEEE
Confidence            7764

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.88  E-value=1.4e-21  Score=177.22  Aligned_cols=225  Identities=17%  Similarity=0.144  Sum_probs=149.5

Q ss_pred             CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeec----cCCcCCCcHHHHHHHHhcccCC---CCcc
Q psy5413          26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIR----SDTISKPTMEMKNYMFNCEVGD---DVYL   98 (285)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~a~~~~~~~~---~~y~   98 (285)
                      .|..+.++.+.+.|+..                      |++++||.    +.+.++.+|++.+++.+++...   ....
T Consensus        18 ~~~~~~~~~G~~~~d~d----------------------G~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~   75 (395)
T PRK03715         18 PDIVFTHGKGSWLYDHN----------------------GKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSPAF   75 (395)
T ss_pred             CCceEEeeecCEEEECC----------------------CCEEEECCcChhhccCCCCCHHHHHHHHHHHHhcccccccc
Confidence            34556677777777643                      45667765    3456778999999999876521   1111


Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcccc-----CC-CeEE-ecCCcceeeecccccccccccccccc
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDR-----RD-SEII-VGDCSHIMLWEQGGASQTSVYSQIGR  171 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~-----~g-~~vi-~~~~~h~~~~~~~~~~~~~~~~~~~g  171 (285)
                      .++...+|.+.+++..+.+.++|++||++|++.|++++...     ++ ++|| ....+|+.+.....++....+...+.
T Consensus        76 ~~~~~~~la~~l~~~~~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~  155 (395)
T PRK03715         76 YNEPMAKLAGLLTQHSCFDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFA  155 (395)
T ss_pred             cCHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCC
Confidence            34556677777777666678899999999999999998632     23 2344 46788988754333331111111111


Q ss_pred             eeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-
Q psy5413         172 VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-  250 (285)
Q Consensus       172 ~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-  250 (285)
                      .....++..  ...|++++++.+.+       ++++|++|++++.+|....|++++++|+++|++||+++|+||+++++ 
T Consensus       156 ~~~~~~~~~--~~~d~~~l~~~l~~-------~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~G  226 (395)
T PRK03715        156 PQVPGFPKA--ELNDIASVEKLITD-------KTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCG  226 (395)
T ss_pred             CCCCCceee--CCchHHHHHHHcCC-------CceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence            111111111  12488999999875       78999999999988444567999999999999999999999998843 


Q ss_pred             ----hhhcccCCeE--EEecccccCc--ceeEEeecCccc
Q psy5413         251 ----AEVCASVDTV--MFCLSKGLGA--PVGSILAGPEEF  282 (285)
Q Consensus       251 ----~~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~  282 (285)
                          ....++.++.  +.+++|.+++  |.|+++.. +++
T Consensus       227 RtG~~~a~~~~gv~PDi~t~gK~lg~G~p~~av~~~-~~i  265 (395)
T PRK03715        227 RTGTLFAYELSGIEPDIMTLGKGIGGGVPLAALLAK-AEV  265 (395)
T ss_pred             CCcchhhHhhcCCCCceeeehhhhhCCcceEEEEEc-ccc
Confidence                2222333333  5677899988  88877654 443

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.88  E-value=1.7e-21  Score=177.36  Aligned_cols=202  Identities=15%  Similarity=0.112  Sum_probs=154.4

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc----CC-----C-cEEEcCChHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA----GK-----E-AAIFVPSGTMGNLIAI  133 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~----g~-----~-~~~~~~~Gs~a~~~al  133 (285)
                      |+++++|..+.+.. +.+.+.+++.+...+...|....+..+|++.+++++    |.     + .+++++|+++++..++
T Consensus        28 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~  107 (396)
T PRK09147         28 DLPPISLSIGEPKHPTPAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFA  107 (396)
T ss_pred             CCCeEecCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHH
Confidence            67889999877765 466888888766544456765566778999998875    53     2 3577888899999999


Q ss_pred             HHccccC---CCeEEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEE
Q psy5413         134 MTHCDRR---DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLV  208 (285)
Q Consensus       134 ~~~~~~~---g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v  208 (285)
                      ++++ .+   |+.|+++.+++......   .      ...|.+++.+|.+++  +.+|++++++.+.+       ++++|
T Consensus       108 ~~l~-~~~~~gd~vlv~~P~y~~~~~~---~------~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~-------~~k~i  170 (396)
T PRK09147        108 QTVI-DRDGPGPLVVCPNPFYQIYEGA---A------LLAGAEPYFLNCDPANNFAPDFDAVPAEVWA-------RTQLL  170 (396)
T ss_pred             HHHc-CCCCCCCEEEEcCCCccchHHH---H------HhcCCEEEEeccCccccCccCHHHHHHHHhh-------ccEEE
Confidence            9887 57   78899988876544332   2      345889999987533  46899999988866       78999


Q ss_pred             EEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh--h-------h--c--c---cCC--eEEEecccccCc
Q psy5413         209 CVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA--E-------V--C--A---SVD--TVMFCLSKGLGA  270 (285)
Q Consensus       209 ~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~--~-------~--~--~---~~d--v~~~s~sK~l~~  270 (285)
                      ++++|+||| |.+++.+++++|+++|++||++||+||+|..+.  .       .  .  .   ..+  +++.|+||.++.
T Consensus       171 ~l~nP~NPT-G~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~  249 (396)
T PRK09147        171 FVCSPGNPT-GAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNV  249 (396)
T ss_pred             EEcCCCCCc-CccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCC
Confidence            999999999 999999999999999999999999999987321  0       1  0  0   112  449999996544


Q ss_pred             --ceeEEeecCccccc
Q psy5413         271 --PVGSILAGPEEFIQ  284 (285)
Q Consensus       271 --p~gg~~~~~~~~i~  284 (285)
                        .+.|++++++++++
T Consensus       250 ~GlRiG~~~~~~~l~~  265 (396)
T PRK09147        250 PGLRSGFVAGDAALLK  265 (396)
T ss_pred             ccceeeeecCCHHHHH
Confidence              77889999887764

>PLN02242 methionine gamma-lyase

Probab=99.88  E-value=1.4e-21  Score=178.10  Aligned_cols=193  Identities=20%  Similarity=0.238  Sum_probs=145.8

Q ss_pred             ccCCcCCCcHHHHHHHHhccc----CCCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEE
Q psy5413          72 RSDTISKPTMEMKNYMFNCEV----GDDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEII  145 (285)
Q Consensus        72 ~~~~~~~~~~~v~~a~~~~~~----~~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi  145 (285)
                      .+..+..+.++..+++.....    +...|+  .+|...+|++.+++++|.+.+++++||++|+..++.+++ ++||+|+
T Consensus        41 ~s~t~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~Pt~~~LE~~lA~l~g~~~~l~~~sG~~Ai~~al~al~-~~GD~Vl  119 (418)
T PLN02242         41 ASATFTVMEPDTMRRMFSGELGPDRDFYIYSRHFNPTVLNLGRQMAALEGTEAAYCTASGMSAISSVLLQLC-SSGGHVV  119 (418)
T ss_pred             cCCceecCCHHHHHHHhcccccccCCCccccCCCChhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHh-CCCCEEE
Confidence            344445567777777664432    123465  688999999999999999999999999999999999887 6999999


Q ss_pred             ecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHH
Q psy5413         146 VGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQ  225 (285)
Q Consensus       146 ~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~  225 (285)
                      ++++.|..+.....    .......|.+++.++.     .|+++++++|++.      ++++|++++|+||+ |.+.+  
T Consensus       120 ~~~~~Y~~~~~~~~----~~~~~~~G~~~~~~d~-----~d~e~l~~~i~~~------~tklV~lesp~NPt-G~v~d--  181 (418)
T PLN02242        120 ASNTLYGGTHALLA----HFLPRKCNITTTFVDI-----TDLEAVKKAVVPG------KTKVLYFESISNPT-LTVAD--  181 (418)
T ss_pred             EcCCcHHHHHHHHH----HhhhhccCceEEEcCC-----CCHHHHHHhcCcC------CCEEEEEecCCCCC-CcccC--
Confidence            88876543322100    0000224666655544     2899999999761      48999999999999 89998  


Q ss_pred             HHHHHHHHHHHcCCeEEEeCccCChh--hhcccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413         226 WLRELKARCQEHNIPVHMDGARLPLA--EVCASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ  284 (285)
Q Consensus       226 ~l~~i~~la~~~gi~li~Dea~~~~~--~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~  284 (285)
                       +++|+++|++||+++|+|++|..+.  ....++|+++.|++|++++   .+||++++++++++
T Consensus       182 -l~~I~~la~~~gi~livDea~~~~~~~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~  244 (418)
T PLN02242        182 -IPELARIAHEKGVTVVVDNTFAPMVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAELVN  244 (418)
T ss_pred             -HHHHHHHHHHhCCEEEEECCCCccCCCHHHcCCcEEEEeCccccCCCCCceEEEEEcCHHHHH
Confidence             9999999999999999999997321  1223689999999999977   45899998887654

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.88  E-value=2.1e-21  Score=176.19  Aligned_cols=202  Identities=14%  Similarity=0.113  Sum_probs=154.1

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc----C--C--C-cEEEcCChHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA----G--K--E-AAIFVPSGTMGNLIA  132 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~----g--~--~-~~~~~~~Gs~a~~~a  132 (285)
                      ++.+++|..+.+.. +++.+.+++.+....  ...|.......+|++.+++++    |  .  + .+++++|+++++..+
T Consensus        29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~  108 (388)
T PRK07366         29 GKELIDLSLGSSDLPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHL  108 (388)
T ss_pred             CCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHH
Confidence            56778998776665 477889998876542  235766667888999999986    3  2  3 356778889999999


Q ss_pred             HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413         133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLVCV  210 (285)
Q Consensus       133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~i  210 (285)
                      +.+++ .+||.|+++++++.....   ..      ...|.+++.++..++  +.+|++++++.+..       ++++|++
T Consensus       109 ~~~l~-~~gd~Vlv~~P~y~~~~~---~~------~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-------~~k~i~l  171 (388)
T PRK07366        109 PLAVL-NPGDFALLLDPGYPSHAG---GV------YLAGGQIYPMPLRAENDFLPVFADIPTEVLA-------QARLMVL  171 (388)
T ss_pred             HHHhC-CCCCEEEEcCCCCcchHH---HH------HhcCCEEEEEECCCccCCCCCHHHHHHhhcc-------cceEEEE
Confidence            99877 599999999888754433   22      345888888887543  45788899888766       6899999


Q ss_pred             ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh--------hhc---ccCC--eEEEecccccCc--ceeEE
Q psy5413         211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA--------EVC---ASVD--TVMFCLSKGLGA--PVGSI  275 (285)
Q Consensus       211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~--------~~~---~~~d--v~~~s~sK~l~~--p~gg~  275 (285)
                      ++|+||| |.+++.+++++|+++|++||++||+||+|..+.        .+.   ...+  +++.||||.++.  .+.|+
T Consensus       172 ~~p~NPT-G~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~  250 (388)
T PRK07366        172 SYPHNPT-TAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGF  250 (388)
T ss_pred             eCCCCCC-CccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhhee
Confidence            9999999 999999999999999999999999999987221        111   1123  348999999864  78889


Q ss_pred             eecCccccc
Q psy5413         276 LAGPEEFIQ  284 (285)
Q Consensus       276 ~~~~~~~i~  284 (285)
                      +++++++++
T Consensus       251 ~v~~~~li~  259 (388)
T PRK07366        251 AIGNAQLIQ  259 (388)
T ss_pred             hcCCHHHHH
Confidence            999888764

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.88  E-value=1.2e-21  Score=178.73  Aligned_cols=198  Identities=17%  Similarity=0.165  Sum_probs=147.7

Q ss_pred             CCeeeeeccCCcCC--CcHHHHHHHHhcccCCC--------CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK--PTMEMKNYMFNCEVGDD--------VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~~~--------~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~  134 (285)
                      ++++++|.++++-+  .+|++++++.++.....        .++..+...+|++.+++++|.+..+++++|++|++.+++
T Consensus        44 ~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~~~l~~~sG~~an~~ai~  123 (402)
T TIGR01821        44 AKDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKESALVFTSGYVANDATLA  123 (402)
T ss_pred             CeeEEEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCCeEEEECchHHHHHHHHH
Confidence            36789999877766  78999999987765311        334567789999999999998888999999999999999


Q ss_pred             Hccc-cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         135 THCD-RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       135 ~~~~-~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      ++.. ++++.|+++..+|.+.......         .+..+..++.     .|++++++.++..   ...++++|+++++
T Consensus       124 ~l~~~~~~~~v~~~~~~h~s~~~~~~~---------~g~~~~~~~~-----~d~~~l~~~l~~~---~~~~~~~v~~e~~  186 (402)
T TIGR01821       124 TLAKIIPGCVIFSDELNHASMIEGIRH---------SGAEKFIFRH-----NDVAHLEKLLQSV---DPNRPKIIAFESV  186 (402)
T ss_pred             HhhCCCCCCEEEEcchHhHHHHHHHHH---------cCCeEEEECC-----CCHHHHHHHHHhc---cCCCCeEEEEcCC
Confidence            8763 2566666666678655332212         2444444432     3788888888641   1126899999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh-----h------hcccCCeEEEecccccCcceeEEeecCcc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA-----E------VCASVDTVMFCLSKGLGAPVGSILAGPEE  281 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~-----~------~~~~~dv~~~s~sK~l~~p~gg~~~~~~~  281 (285)
                      +|++ |.+.|   +++|+++|++||+++|+||+|+ +..     .      ..+..|+++.+++|.+++ .||+++++++
T Consensus       187 ~~~~-G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~-~GG~i~~~~~  261 (402)
T TIGR01821       187 YSMD-GDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGV-VGGYIAASRK  261 (402)
T ss_pred             CCCC-CCccC---HHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhcc-CCceeecCHH
Confidence            9999 89999   9999999999999999999987 221     1      112357778899999987 5678888877


Q ss_pred             ccc
Q psy5413         282 FIQ  284 (285)
Q Consensus       282 ~i~  284 (285)
                      +++
T Consensus       262 ~~~  264 (402)
T TIGR01821       262 LID  264 (402)
T ss_pred             HHH
Confidence            653

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK08068 transaminase; Reviewed

Probab=99.88  E-value=2.7e-21  Score=175.63  Aligned_cols=202  Identities=17%  Similarity=0.155  Sum_probs=155.7

Q ss_pred             CCeeeeeccCCcCCC-cHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc----CC----C-cEEEcCChHHHHHHH
Q psy5413          65 NIRTVDIRSDTISKP-TMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA----GK----E-AAIFVPSGTMGNLIA  132 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~----g~----~-~~~~~~~Gs~a~~~a  132 (285)
                      +..+++|..+++..+ .+.+.+++.+....  ...|.+.+...+|++.+++++    |.    + .+++++||++++..+
T Consensus        31 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~  110 (389)
T PRK08068         31 GHDVINLGQGNPDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVEL  110 (389)
T ss_pred             CCCeEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHH
Confidence            346789998887775 46788888765543  245766677889999999986    42    3 457888899999999


Q ss_pred             HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413         133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCV  210 (285)
Q Consensus       133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i  210 (285)
                      +.+++ ++|+.|++++++|.......         ...|.+++.++.++  ++.+|++++++.+.+       ++++|++
T Consensus       111 ~~~~~-~~gd~vlv~~P~y~~~~~~~---------~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~-------~~~~v~l  173 (389)
T PRK08068        111 PQCLM-NPGDTILVPDPGYPDYLSGV---------ALARAQFETMPLIAENNFLPDYTKIPEEVAE-------KAKLMYL  173 (389)
T ss_pred             HHHhC-CCCCEEEEcCCCCcchHHHH---------HhcCCEEEEeecccccCCCCCHHHHHHhccc-------cceEEEE
Confidence            88877 58999999988876554322         24488888888753  346799999999876       7899999


Q ss_pred             ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc---cc--CCeEEEecccccCc--ceeEEe
Q psy5413         211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC---AS--VDTVMFCLSKGLGA--PVGSIL  276 (285)
Q Consensus       211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~---~~--~dv~~~s~sK~l~~--p~gg~~  276 (285)
                      ++|+||| |.+++.+++++|+++|++||+++|+||+|..+.       ...   ..  ..+++.|+||.++.  .+.|++
T Consensus       174 ~~P~NPT-G~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~  252 (389)
T PRK08068        174 NYPNNPT-GAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFA  252 (389)
T ss_pred             ECCCCCC-CCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeE
Confidence            9999999 999999999999999999999999999986211       111   11  12558999999864  677888


Q ss_pred             ecCccccc
Q psy5413         277 AGPEEFIQ  284 (285)
Q Consensus       277 ~~~~~~i~  284 (285)
                      ++++++++
T Consensus       253 ~~~~~l~~  260 (389)
T PRK08068        253 VGNESVIE  260 (389)
T ss_pred             ecCHHHHH
Confidence            88887764

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.88  E-value=1.5e-21  Score=176.72  Aligned_cols=187  Identities=17%  Similarity=0.137  Sum_probs=140.3

Q ss_pred             cCCCcHHHHHHHHhcccCCCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCccee
Q psy5413          76 ISKPTMEMKNYMFNCEVGDDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIM  153 (285)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~  153 (285)
                      +..+..+..+++.+...+...|+  .+|...+|++.+++++|.+.+++++||++|+..++.+++ ++||+|+++++.|..
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~G~~~al~~~sG~~Ai~~~l~al~-~~Gd~Vv~~~~~y~~  112 (386)
T PRK06767         34 FTFETAQQGEASFAGVDPSYIYSRLGNPTVKLFEERMAVLEGGEEALAFGSGMAAISATLIGFL-KAGDHIICSNGLYGC  112 (386)
T ss_pred             eecCCHHHHHHhhccCcCCccccCCCCcchHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEcCCcHHH
Confidence            34455555555443322333444  578899999999999999999999999999999988876 699999998877654


Q ss_pred             eecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHH
Q psy5413         154 LWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR  233 (285)
Q Consensus       154 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~l  233 (285)
                      +.......     ....+..+..++.     .|++++++++++       ++++|++++|+||+ |.+.|   +++|.++
T Consensus       113 ~~~~~~~~-----~~~~gi~~~~~~~-----~d~~~l~~~i~~-------~tklV~lesp~Npt-G~v~d---l~~I~~l  171 (386)
T PRK06767        113 TYGFLEVL-----EEKFMITHSFCDM-----ETEADIENKIRP-------NTKLIFVETPINPT-MKLID---LKQVIRV  171 (386)
T ss_pred             HHHHHHHH-----HhhcCeEEEEeCC-----CCHHHHHHhhCc-------CceEEEEeCCCCCC-ceecC---HHHHHHH
Confidence            43211110     0223444433332     388999999977       78999999999999 99999   9999999


Q ss_pred             HHHcCCeEEEeCccCCh---hhhcccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413         234 CQEHNIPVHMDGARLPL---AEVCASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ  284 (285)
Q Consensus       234 a~~~gi~li~Dea~~~~---~~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~  284 (285)
                      |+++|+++|+|+++...   ..+..++|+++.|++|++++   ++||++++++++++
T Consensus       172 a~~~g~~vivD~a~a~~~~~~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~  228 (386)
T PRK06767        172 AKRNGLLVIVDNTFCSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALA  228 (386)
T ss_pred             HHHcCCEEEEECCCcccccCCchhcCCcEEEecCcceecCCCCceeEEEEeChHHHH
Confidence            99999999999998721   22345789999999999987   45889988877654

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=2.5e-21  Score=175.02  Aligned_cols=202  Identities=20%  Similarity=0.206  Sum_probs=159.5

Q ss_pred             CeeeeeccCCcCCCcHHHHHHHHhcccC-----C-CCcc----CChhHHHHHHHHHhHcCCCc---EEEcCChHHHHHHH
Q psy5413          66 IRTVDIRSDTISKPTMEMKNYMFNCEVG-----D-DVYL----EDPTCKELQEKAAKLAGKEA---AIFVPSGTMGNLIA  132 (285)
Q Consensus        66 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~-----~-~~y~----~~~~~~~l~~~la~~~g~~~---~~~~~~Gs~a~~~a  132 (285)
                      +.++.|.+......+..|.+++.+....     + ..+.    ....+++.|+.+++++|.+.   ++|+.+.|+++..+
T Consensus        21 ~~~vylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~v  100 (405)
T COG0520          21 KPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLV  100 (405)
T ss_pred             CCeEEecCcccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHH
Confidence            3456666666566677999998865431     1 1121    12347899999999999763   68999999999999


Q ss_pred             HHHcc--ccCCCeEEecCCcceeee-cccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413         133 IMTHC--DRRDSEIIVGDCSHIMLW-EQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVC  209 (285)
Q Consensus       133 l~~~~--~~~g~~vi~~~~~h~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~  209 (285)
                      ..++.  .++||+||+++.-|.+.. .+..++      +..|.+++.+|.++++.+++++++..+++       +|++|.
T Consensus       101 a~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~------~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~-------~Tklva  167 (405)
T COG0520         101 ARGLGRSLKPGDEIVVSDLEHHSNIVPWQELA------KRTGAKVRVIPLDDDGLLDLDALEKLITP-------KTKLVA  167 (405)
T ss_pred             HHHhhhhhcCCCEEEEccCcchhhHHHHHHHH------HhcCcEEEEEecCCCCCcCHHHHHHhcCC-------CceEEE
Confidence            99874  368999999876664332 222333      45689999999878899999999999988       899999


Q ss_pred             EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----ChhhhcccCCeEEEecccccCcc-eeEEeecCccccc
Q psy5413         210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGAP-VGSILAGPEEFIQ  284 (285)
Q Consensus       210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~p-~gg~~~~~~~~i~  284 (285)
                      +++++|.+ |.+.|   +++|+++||++|+++++|.+|+    .+..-..++|++.+|.||||+|| -.|++..++++++
T Consensus       168 is~vSn~t-G~~~p---v~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~  243 (405)
T COG0520         168 LSHVSNVT-GTVNP---VKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLE  243 (405)
T ss_pred             EECccccc-cccch---HHHHHHHHHHcCCEEEEECccccCccCCCchhcCCCEEEEcccccccCCCceEEEEEchHHHh
Confidence            99999999 99999   9999999999999999999988    23333469999999999999998 4488889888775

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.87  E-value=2.1e-21  Score=175.02  Aligned_cols=185  Identities=21%  Similarity=0.235  Sum_probs=143.1

Q ss_pred             CCCcHHHHHHHHhcccCCCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceee
Q psy5413          77 SKPTMEMKNYMFNCEVGDDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIML  154 (285)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~  154 (285)
                      ..+..+..+++.....+...|+  .+|...+|++.+++++|.+.+++++||++|+..++.+++ ++|++|+++...|..+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~-~~gd~Vl~~~~~y~~~   92 (369)
T cd00614          14 VFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALL-KAGDHVVASDDLYGGT   92 (369)
T ss_pred             ecCCHHHHHHhhcCCcCCceeECCCChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHc-CCCCEEEECCCCcchH
Confidence            3445555555443322334454  678899999999999999999999999999999999887 6899999988776554


Q ss_pred             eccc-ccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHH
Q psy5413         155 WEQG-GASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR  233 (285)
Q Consensus       155 ~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~l  233 (285)
                      .... ...      ...|.++..++.+     |++++++++++       ++++|++++|+||+ |.+.|   +++|+++
T Consensus        93 ~~~~~~~~------~~~g~~~~~v~~~-----d~~~l~~~i~~-------~~~~v~~e~~~np~-g~~~d---l~~i~~l  150 (369)
T cd00614          93 YRLFERLL------PKLGIEVTFVDPD-----DPEALEAAIKP-------ETKLVYVESPTNPT-LKVVD---IEAIAEL  150 (369)
T ss_pred             HHHHHHHH------hhcCeEEEEeCCC-----CHHHHHHhcCC-------CCeEEEEECCCCCC-CeecC---HHHHHHH
Confidence            3211 111      2457777777653     68999999976       78999999999999 99999   9999999


Q ss_pred             HHHcCCeEEEeCccCCh---hhhcccCCeEEEecccccCc---ceeEEeecCc-cccc
Q psy5413         234 CQEHNIPVHMDGARLPL---AEVCASVDTVMFCLSKGLGA---PVGSILAGPE-EFIQ  284 (285)
Q Consensus       234 a~~~gi~li~Dea~~~~---~~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~-~~i~  284 (285)
                      |++||+++|+|++++..   ..+..++|+++.|++|++++   .+||++++++ ++++
T Consensus       151 a~~~g~~livD~t~~~~~~~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~  208 (369)
T cd00614         151 AHEHGALLVVDNTFATPYLQRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQ  208 (369)
T ss_pred             HHHcCCEEEEECCCcchhcCChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHH
Confidence            99999999999998732   12334789999999999987   5688888876 6553

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK06062 hypothetical protein; Provisional

Probab=99.87  E-value=2e-21  Score=178.93  Aligned_cols=235  Identities=13%  Similarity=0.070  Sum_probs=155.1

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC---CccCChhH
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD---VYLEDPTC  103 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~---~y~~~~~~  103 (285)
                      |..+.++.+.+.|+..++.+++.+..++.                  .+.++.||+|.+++.+++....   ....++..
T Consensus        36 p~~i~~a~G~~l~D~dG~~ylD~~~g~~~------------------~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~   97 (451)
T PRK06062         36 PMVIAGAEGSYVWDYEGRRYLDFSSQLVN------------------TNIGHQHPKVVAAIQEQAARLCTVAPAHANDAR   97 (451)
T ss_pred             CceEEeceeeEEEECCCCEEEEcccCHHh------------------hcCCCCCHHHHHHHHHHHHhcCCcCCccCCHHH
Confidence            55566667777776554444444333332                  2347899999999998876311   11245668


Q ss_pred             HHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHccccCCCe-EEe-cCCcceeeeccccccccccccc----ccceeee
Q psy5413         104 KELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDRRDSE-IIV-GDCSHIMLWEQGGASQTSVYSQ----IGRVLMR  175 (285)
Q Consensus       104 ~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi~-~~~~h~~~~~~~~~~~~~~~~~----~~g~~~~  175 (285)
                      .+|.++|+++..  .++++|++|||+|++.|++++...+|+. |+. ...||+.+.....+...+.+..    ..+...+
T Consensus        98 ~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~  177 (451)
T PRK06062         98 SEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHF  177 (451)
T ss_pred             HHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEe
Confidence            899999999874  5678999999999999999988666654 443 5788987754332221111110    1122222


Q ss_pred             eeecCCC--C--CCC-------HHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEe
Q psy5413         176 GVTNQKD--G--TFD-------LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD  244 (285)
Q Consensus       176 ~~~~~~~--~--~~d-------~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D  244 (285)
                      ..|....  +  ..|       ++++++.++..   ..+++++|++|++++..|....|.++|++|+++|++||+++|+|
T Consensus       178 ~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~---~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~D  254 (451)
T PRK06062        178 FGPFLYRSEFHATTEEEECERALAHLERVIELE---GPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIAD  254 (451)
T ss_pred             CCCCccccccCCCChHHHHHHHHHHHHHHHHhc---CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEee
Confidence            2221110  0  012       67788888531   12479999999999988555678999999999999999999999


Q ss_pred             CccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413         245 GARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       245 ea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                      |+++++     ....++.++.  +.+++|.+++   |+|+++.++ +++
T Consensus       255 EV~tGfGRtG~~~a~~~~gv~PDi~t~gK~lggG~~Pigav~~~~-~i~  302 (451)
T PRK06062        255 EVMAGFGRTGKWFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISE-AIA  302 (451)
T ss_pred             ccccCCCcCcHHHHHHhcCCCCCeeeechhhhcCCcCcEEEEEcH-HHH
Confidence            998843     2233445544  6778899987   888877664 444

>PLN02624 ornithine-delta-aminotransferase

Probab=99.87  E-value=3.4e-21  Score=178.52  Aligned_cols=209  Identities=18%  Similarity=0.199  Sum_probs=140.9

Q ss_pred             cCCeeeeeccC----CcCCCcHHHHHHHHhcccCCC---CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHc
Q psy5413          64 VNIRTVDIRSD----TISKPTMEMKNYMFNCEVGDD---VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        64 ~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~---~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~  136 (285)
                      .|++++||.++    +.++.+|+|.+++.+++....   ....++...+|++.++++++.+.++|++||++|++.|++++
T Consensus        73 dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~AlklA  152 (474)
T PLN02624         73 EGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMFGYDMVLPMNTGAEGVETAIKLA  152 (474)
T ss_pred             CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHhhcCCCeEEEeCChHHHHHHHHHHH
Confidence            46788888765    345689999999998876421   11235668999999999999888999999999999999987


Q ss_pred             ccc--------CCCe-EEe-cCCcceeeeccccccccccccccccee---eeeeecCCCCCCCHHHHHHHhcccccccCC
Q psy5413         137 CDR--------RDSE-IIV-GDCSHIMLWEQGGASQTSVYSQIGRVL---MRGVTNQKDGTFDLDEMEAKFSTADNIHCA  203 (285)
Q Consensus       137 ~~~--------~g~~-vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~  203 (285)
                      ...        +++. |+. ...+|+.+.....+...+.+...++..   +..++.     .|++.+++.++.    +++
T Consensus       153 r~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~----~~~  223 (474)
T PLN02624        153 RKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF-----GDLDALEKIFEE----DGD  223 (474)
T ss_pred             HHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC-----CCHHHHHHHHHh----CCC
Confidence            641        1233 333 466787664433322111111111111   122222     278999999865    344


Q ss_pred             ceEEEEEecccCCCCeeeCC-HHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCCeE--EEecccccCc---ce
Q psy5413         204 STSLVCVENTHNYCGGTVLP-MQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVDTV--MFCLSKGLGA---PV  272 (285)
Q Consensus       204 ~~~~v~i~~~~n~~gG~~~~-~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~---p~  272 (285)
                      ++++|++|+++|++ |.++| .++|++|+++|++||+++|+||+|+++.     ......++.  +.+++|.+++   |.
T Consensus       224 ~iaaiiiEpv~~~~-G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~lsK~lggG~~pi  302 (474)
T PLN02624        224 RIAAFLFEPIQGEA-GVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILGKALGGGVIPV  302 (474)
T ss_pred             CEEEEEECCccCCC-CCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEEecccccCCCCcc
Confidence            79999999999998 66655 5579999999999999999999998432     111111221  4556899887   45


Q ss_pred             eEEeecCcccc
Q psy5413         273 GSILAGPEEFI  283 (285)
Q Consensus       273 gg~~~~~~~~i  283 (285)
                      |+ ++.+++++
T Consensus       303 ga-v~~~~~i~  312 (474)
T PLN02624        303 SA-VLADKDVM  312 (474)
T ss_pred             ee-eeecHHHH
Confidence            55 44555554

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.87  E-value=2.8e-21  Score=174.99  Aligned_cols=201  Identities=13%  Similarity=0.120  Sum_probs=153.4

Q ss_pred             CeeeeeccC-CcCCCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccC
Q psy5413          66 IRTVDIRSD-TISKPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRR  140 (285)
Q Consensus        66 ~~~~~~~~~-~~~~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~  140 (285)
                      .++++|..+ +...+++++.+++.+....  ...|.......++++.+++++|.+  .+++++|+++|+..++.+++ .+
T Consensus        28 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~-~~  106 (380)
T PRK06225         28 KEMIWMGQNTNHLGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMRAFL-SP  106 (380)
T ss_pred             CCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhc-CC
Confidence            467888744 4445788999998877653  234655556899999999999864  46999999999999999877 58


Q ss_pred             CCeEEecCCcceeeecccccccccccccccceeeeeeecCC---CCCCCHHHHHHHhcccccccCCceEEEEEecccCCC
Q psy5413         141 DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK---DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYC  217 (285)
Q Consensus       141 g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~  217 (285)
                      |++|++++++|.....   ..      ...|.+++.++...   ++.+|++++++.+++       ++++|++++|+||+
T Consensus       107 gd~vl~~~p~y~~~~~---~~------~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~-------~~~~v~l~~p~Npt  170 (380)
T PRK06225        107 GDNAVTPDPGYLIIDN---FA------SRFGAEVIEVPIYSEECNYKLTPELVKENMDE-------NTRLIYLIDPLNPL  170 (380)
T ss_pred             CCEEEEcCCCCcchHH---HH------HHhCceEEeeccccccCCccCCHHHHHhhcCC-------CceEEEEeCCCCCC
Confidence            9999988876643322   11      24478888877522   356899999999977       78999999999999


Q ss_pred             CeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-------hhhcccCCeEEEecccccCc--ceeEEeecCccccc
Q psy5413         218 GGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-------AEVCASVDTVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       218 gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-------~~~~~~~dv~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                       |.+++.+++++|+++|++||+++|+||+|..+       ........+++.|+||+++.  .+.|++++++++++
T Consensus       171 -G~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RiG~i~~~~~l~~  245 (380)
T PRK06225        171 -GSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIFGMAGLRIGAVVATPDLIE  245 (380)
T ss_pred             -CcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhcCCccceeEEEecCHHHHH
Confidence             89999999999999999999999999997521       11112233558899999974  56678888877664

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.87  E-value=2.5e-21  Score=176.53  Aligned_cols=205  Identities=19%  Similarity=0.154  Sum_probs=141.2

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCCC---CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcc
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGDD---VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~---~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~  137 (285)
                      |++++||.++    +.++.+|++.+++.+++....   .+...+...++++.++++.+.+.+++++||++|++.|++++.
T Consensus        40 g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~al~~a~  119 (401)
T PRK00854         40 GNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALTGSHKVLPMNSGAEAVETAIKAVR  119 (401)
T ss_pred             CCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHH
Confidence            4556666554    235579999999998876321   112356789999999999998889999999999999999985


Q ss_pred             cc--------CC-CeEE-ecCCcceeeeccccccccccccc---ccceeeeeeecCCCCCCCHHHHHHHhcccccccCCc
Q psy5413         138 DR--------RD-SEII-VGDCSHIMLWEQGGASQTSVYSQ---IGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCAS  204 (285)
Q Consensus       138 ~~--------~g-~~vi-~~~~~h~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~  204 (285)
                      ..        +| ++|+ ..+.+|+.+.....+..++.+..   .....+..++.     .|++++++.|.+       +
T Consensus       120 ~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~i~~-------~  187 (401)
T PRK00854        120 KWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF-----GDAEALEAAITP-------N  187 (401)
T ss_pred             HHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-----CCHHHHHHHhCC-------C
Confidence            31        23 3444 46778887643322221111111   11122233332     389999999976       7


Q ss_pred             eEEEEEecccCCCCeeeCC-HHHHHHHHHHHHHcCCeEEEeCccCChhhh-----c----ccCCeEEEecccccCc--ce
Q psy5413         205 TSLVCVENTHNYCGGTVLP-MQWLRELKARCQEHNIPVHMDGARLPLAEV-----C----ASVDTVMFCLSKGLGA--PV  272 (285)
Q Consensus       205 ~~~v~i~~~~n~~gG~~~~-~~~l~~i~~la~~~gi~li~Dea~~~~~~~-----~----~~~dv~~~s~sK~l~~--p~  272 (285)
                      +++|++++++|++ |.+.| .+++++|+++|++||+++|+||+|+++...     .    -..|++++  +|++++  ..
T Consensus       188 ~~aii~e~~~~~~-G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~--~K~l~gg~~~  264 (401)
T PRK00854        188 TVAFLVEPIQGEA-GVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLI--GKALSGGFYP  264 (401)
T ss_pred             eEEEEEccccCCC-CCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEe--cccccCCccC
Confidence            9999999999999 66665 678999999999999999999998843211     1    13465554  699987  23


Q ss_pred             eEEeecCccccc
Q psy5413         273 GSILAGPEEFIQ  284 (285)
Q Consensus       273 gg~~~~~~~~i~  284 (285)
                      +|++++++++++
T Consensus       265 ig~v~~~~~~~~  276 (401)
T PRK00854        265 VSAVLSNSEVLG  276 (401)
T ss_pred             eEEEEEcHHHHh
Confidence            556777776654

>PRK12403 putative aminotransferase; Provisional

Probab=99.87  E-value=2.6e-21  Score=178.58  Aligned_cols=236  Identities=14%  Similarity=0.124  Sum_probs=153.2

Q ss_pred             CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC----Cc-cCC
Q psy5413          26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD----VY-LED  100 (285)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~----~y-~~~  100 (285)
                      .|..+.++.+.+.|+..++.+++.+..|+.                  .+.++.||+|.+|+.+++....    .+ ..+
T Consensus        36 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~------------------~~lGh~hp~v~~A~~~q~~~~~~~~~~~~~~~   97 (460)
T PRK12403         36 GPRVMVRGEGLHLWDNDGKRYLDGMSGLWC------------------TNLGYGRKDLAAAAARQMEQLPYYNMFFHTTH   97 (460)
T ss_pred             CCceEEeceeeEEEeCCCCEEEECchhHHh------------------hcCCCCCHHHHHHHHHHHHhCCCeecccccCC
Confidence            356677778888887655555444444333                  2357899999999998876411    22 246


Q ss_pred             hhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCCeEEe--cCCcceeeeccccccccccccccc
Q psy5413         101 PTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDSEIIV--GDCSHIMLWEQGGASQTSVYSQIG  170 (285)
Q Consensus       101 ~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~~vi~--~~~~h~~~~~~~~~~~~~~~~~~~  170 (285)
                      +...+|+++|+++++  .+.++|++|||+|+++|++++...      +++.+|+  ...||+.+.....++....+....
T Consensus        98 ~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~  177 (460)
T PRK12403         98 PAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMG  177 (460)
T ss_pred             HHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccC
Confidence            778999999999986  567899999999999999998632      2233443  467898865433332111111100


Q ss_pred             --ceeeeeeecCCCC----C--------CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH
Q psy5413         171 --RVLMRGVTNQKDG----T--------FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE  236 (285)
Q Consensus       171 --g~~~~~~~~~~~~----~--------~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~  236 (285)
                        -..+..+|.+..+    .        .+++++++.+.+.   +.+++++|++|++++..|....|.+++++|+++|++
T Consensus       178 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~---~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~  254 (460)
T PRK12403        178 GLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILEL---GAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQ  254 (460)
T ss_pred             CCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHh---CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence              0112222221100    0        1135566655321   234799999999999874456778999999999999


Q ss_pred             cCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413         237 HNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       237 ~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                      ||+++|+||+++++     ....++.++.  +.+++|++++   |+|+++++ ++++
T Consensus       255 ~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gK~lggG~~Piga~v~~-~~i~  310 (460)
T PRK12403        255 YDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLS-KRIA  310 (460)
T ss_pred             cCCEEEEeccccCCCcCchhhhhhhcCCCCCeEEEcccccccccceEEEEEC-HHHH
Confidence            99999999998843     2333444444  4568899985   88888855 4443

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.87  E-value=2.6e-21  Score=175.29  Aligned_cols=202  Identities=13%  Similarity=0.123  Sum_probs=152.8

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcC----C----C-cEEEcCChHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAG----K----E-AAIFVPSGTMGNLIA  132 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g----~----~-~~~~~~~Gs~a~~~a  132 (285)
                      ++.+++|..+.+.. +.+.+.+++.+....  ...|.......+|++.++++++    .    + .+++++|+++++..+
T Consensus        28 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~  107 (383)
T TIGR03540        28 GVDVISLGIGDPDLPTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHI  107 (383)
T ss_pred             CCCeEEeCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHH
Confidence            46778999887776 466788887765432  2456655567889999998753    2    2 356778889999999


Q ss_pred             HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413         133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLVCV  210 (285)
Q Consensus       133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~i  210 (285)
                      +.+++ ++||.|++++++|......   .      ...|.+++.++..++  ..+|++++++++.+       ++++|++
T Consensus       108 ~~~~~-~~gd~vlv~~P~y~~~~~~---~------~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~-------~~~~v~i  170 (383)
T TIGR03540       108 PLAFV-NPGDIVLVPDPGYPVYRIG---T------LFAGGEPYEMPLKEENGFLPDFDAIPEDIAK-------KAKLMFI  170 (383)
T ss_pred             HHHhC-CCCCEEEEeCCCCcchHHH---H------HhcCCEEEEEecCcccCCccCHHHHHhhccc-------cceEEEE
Confidence            99887 5899999988876544332   1      345888888887533  45799999998876       7899999


Q ss_pred             ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hh---cc--cCCeEEEecccccCc--ceeEEe
Q psy5413         211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EV---CA--SVDTVMFCLSKGLGA--PVGSIL  276 (285)
Q Consensus       211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~---~~--~~dv~~~s~sK~l~~--p~gg~~  276 (285)
                      ++|+||| |.+++.+++++|+++|++||+++|+||+|..+.       .+   ..  ...+++.|+||.+|.  .+.|++
T Consensus       171 ~~P~NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~  249 (383)
T TIGR03540       171 NYPNNPT-GAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMA  249 (383)
T ss_pred             eCCCCCc-CccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEE
Confidence            9999999 999999999999999999999999999986211       11   11  122448999999864  567888


Q ss_pred             ecCccccc
Q psy5413         277 AGPEEFIQ  284 (285)
Q Consensus       277 ~~~~~~i~  284 (285)
                      ++++++++
T Consensus       250 i~~~~l~~  257 (383)
T TIGR03540       250 VGNADLIA  257 (383)
T ss_pred             eCCHHHHH
Confidence            88887764

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.87  E-value=2.3e-21  Score=176.27  Aligned_cols=202  Identities=12%  Similarity=0.113  Sum_probs=152.2

Q ss_pred             CCeeeeeccCCcCCCcH-HHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc----C----CCc-EEEcCChHHHHHHH
Q psy5413          65 NIRTVDIRSDTISKPTM-EMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA----G----KEA-AIFVPSGTMGNLIA  132 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~~~-~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~----g----~~~-~~~~~~Gs~a~~~a  132 (285)
                      |+.+++|..+++..+.| .+.+++.+....  ...|....+..+|++.+++++    |    .+. +++++|+++|+..+
T Consensus        34 g~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~  113 (394)
T PRK05942         34 GLDLIDLGMGNPDGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHL  113 (394)
T ss_pred             CCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHH
Confidence            45689999988877544 577776554432  245765556788999999986    3    232 56788889999999


Q ss_pred             HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413         133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCV  210 (285)
Q Consensus       133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i  210 (285)
                      +.+++ .+||+|++++++|.......         ...|.+++.++.+.  ++.+|++++++.+++       ++++|++
T Consensus       114 ~~~~~-~~gd~Vlv~~P~y~~~~~~~---------~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-------~~k~i~l  176 (394)
T PRK05942        114 ALAYV-NPGDVVLVPSPAYPAHFRGP---------LIAGAQIYPIILKPENDWLIDLSSIPEEVAQ-------QAKILYF  176 (394)
T ss_pred             HHHhC-CCCCEEEEcCCCCcchHHHH---------HHcCCEEEEeecCCccCCccCHHHHHHhccc-------cceEEEE
Confidence            98877 69999999988875443211         23488888888753  346899999999876       7899999


Q ss_pred             ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhcc--cCCeEEEecccccCc--ceeEEe
Q psy5413         211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVCA--SVDTVMFCLSKGLGA--PVGSIL  276 (285)
Q Consensus       211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~~--~~dv~~~s~sK~l~~--p~gg~~  276 (285)
                      ++|+||| |.+++.+++++|+++|++||+++|+||+|..+          .....  ...+++.|+||.++.  .+.|++
T Consensus       177 ~~P~NPt-G~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i  255 (394)
T PRK05942        177 NYPSNPT-TATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFV  255 (394)
T ss_pred             cCCCCCC-CCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeee
Confidence            9999999 99999999999999999999999999997611          11111  123458999998754  567888


Q ss_pred             ecCccccc
Q psy5413         277 AGPEEFIQ  284 (285)
Q Consensus       277 ~~~~~~i~  284 (285)
                      ++++++++
T Consensus       256 ~~~~~l~~  263 (394)
T PRK05942        256 VGNRHIIQ  263 (394)
T ss_pred             ecCHHHHH
Confidence            88887764

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.87  E-value=1.9e-21  Score=178.32  Aligned_cols=231  Identities=15%  Similarity=0.169  Sum_probs=153.1

Q ss_pred             CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccC----CcCCCcHHHHHHHHhcccCC--CC--c
Q psy5413          26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSD----TISKPTMEMKNYMFNCEVGD--DV--Y   97 (285)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~--~~--y   97 (285)
                      .|..+.++.+.+.|+..                      |++++||.++    +.++.+|++.+|+.+++...  ..  .
T Consensus        24 ~p~~~~~~~G~~l~D~d----------------------G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~   81 (423)
T PRK05964         24 PPIPIVRAEGAYLYLAD----------------------GRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAG   81 (423)
T ss_pred             CCeeEEeccccEEEeCC----------------------CCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCccccc
Confidence            35566677777777754                      4555666544    55789999999999887631  11  1


Q ss_pred             cCChhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCC-eEE-ecCCcceeeecccccccccccc
Q psy5413          98 LEDPTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDS-EII-VGDCSHIMLWEQGGASQTSVYS  167 (285)
Q Consensus        98 ~~~~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~-~vi-~~~~~h~~~~~~~~~~~~~~~~  167 (285)
                      ..++...+|.++|++...  .+.++|++|||+|++.|++++...      +|+ +|+ ....||+.+.....+.....+.
T Consensus        82 ~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~  161 (423)
T PRK05964         82 FTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMH  161 (423)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCcccc
Confidence            245668889999999873  567899999999999999998643      344 344 3678888764433322112222


Q ss_pred             ccc-----ceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec-ccCCCCeeeCCHHHHHHHHHHHHHcCCeE
Q psy5413         168 QIG-----RVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN-THNYCGGTVLPMQWLRELKARCQEHNIPV  241 (285)
Q Consensus       168 ~~~-----g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~-~~n~~gG~~~~~~~l~~i~~la~~~gi~l  241 (285)
                      ..+     +...+.++..+....+++++++.+.+    +.+++++|++|+ +++.+|..+.|.+++++|+++|++||+++
T Consensus       162 ~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~----~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~ll  237 (423)
T PRK05964        162 ALYTPLLFEQVTAPFPPDGYEQATLDALEALLEK----HAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLL  237 (423)
T ss_pred             ccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHh----CCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence            111     22222222211111237888888865    334899999999 68887556678999999999999999999


Q ss_pred             EEeCccCChh-----hhcccCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413         242 HMDGARLPLA-----EVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       242 i~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                      |+||+++++.     ...+..++.  +.+++|++++   |.|+ ++++++++
T Consensus       238 I~DEv~tg~gr~G~~~a~~~~~v~pDi~~~~K~l~gG~~p~~a-v~~~~~i~  288 (423)
T PRK05964        238 IFDEIATGFGRTGTLFACEQAGVSPDIMCLSKGLTGGYLPLAA-TLCTAEIF  288 (423)
T ss_pred             EEechhhCCCcCcchhHHHhcCCCCCeeeeehhhhcCcccceE-EEEcHHHH
Confidence            9999988442     122222322  4677899966   6665 55666654

>PLN02656 tyrosine transaminase

Probab=99.87  E-value=2.6e-21  Score=176.77  Aligned_cols=197  Identities=16%  Similarity=0.113  Sum_probs=152.9

Q ss_pred             cCCeeeeeccCCcC-----CCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcCC--------CcEEEcCChHHH
Q psy5413          64 VNIRTVDIRSDTIS-----KPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAGK--------EAAIFVPSGTMG  128 (285)
Q Consensus        64 ~~~~~~~~~~~~~~-----~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~--------~~~~~~~~Gs~a  128 (285)
                      .|+.+++|..+++.     .+++.+.+++.+....  ...|++.....++++.++++++.        +.+++++|+++|
T Consensus        29 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a  108 (409)
T PLN02656         29 NGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQA  108 (409)
T ss_pred             cCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHH
Confidence            46789999999986     4577899988876553  24677677788999999998742        456899999999


Q ss_pred             HHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceE
Q psy5413         129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       129 ~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                      +..++.+++ ++||+|++++++|.....   ..      ...|.+++.++..+  ++.+|++++++++++       +++
T Consensus       109 l~~~~~~l~-~~gd~Vlv~~p~y~~~~~---~~------~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~-------~~~  171 (409)
T PLN02656        109 IDVALSMLA-RPGANILLPRPGFPIYEL---CA------AFRHLEVRYVDLLPEKGWEVDLDAVEALADQ-------NTV  171 (409)
T ss_pred             HHHHHHHHh-CCCCeEEEeCCCCCcHHH---HH------HHcCCEEEEEeCCCcCCCCCCHHHHHHHhcc-------Cce
Confidence            999999877 699999999888754322   11      23477888887642  356899999999877       789


Q ss_pred             EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------h---hcccCCeE-EEecccccCc--cee
Q psy5413         207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------E---VCASVDTV-MFCLSKGLGA--PVG  273 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~---~~~~~dv~-~~s~sK~l~~--p~g  273 (285)
                      +|++++|+||| |.+++.+++++|+++|++||+++|+||+|..+.       .   +.....++ +.||||.++.  .+.
T Consensus       172 ~v~l~~P~NPt-G~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRi  250 (409)
T PLN02656        172 ALVIINPGNPC-GNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRL  250 (409)
T ss_pred             EEEEECCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeE
Confidence            99999999999 999999999999999999999999999987221       1   11112244 8999998555  677


Q ss_pred             EEeec
Q psy5413         274 SILAG  278 (285)
Q Consensus       274 g~~~~  278 (285)
                      |++++
T Consensus       251 G~~i~  255 (409)
T PLN02656        251 GWFVT  255 (409)
T ss_pred             EEEEE
Confidence            78876

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.87  E-value=1.8e-21  Score=179.17  Aligned_cols=214  Identities=18%  Similarity=0.237  Sum_probs=143.7

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCC----CCccCChhHHHHHHHHHhHcCC--CcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD----DVYLEDPTCKELQEKAAKLAGK--EAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~----~~y~~~~~~~~l~~~la~~~g~--~~~~~~~~Gs~a~~~al~  134 (285)
                      |++++||.++    +.++.+|+|.+++.+++...    .....++...+|.++|++..+.  +.++|++|||+|++.|++
T Consensus        53 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlK  132 (453)
T PRK06943         53 GRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGCTHEPAIELAERLAALTGGTLGHAFFASDGASAVEIALK  132 (453)
T ss_pred             CCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHH
Confidence            4556666544    45789999999999887631    1122466788999999998763  578999999999999999


Q ss_pred             Hcccc------CCC-eEEe-cCCcceeeecccccccccccccccce---eeeeeecCCC-C-----------CCCHHHHH
Q psy5413         135 THCDR------RDS-EIIV-GDCSHIMLWEQGGASQTSVYSQIGRV---LMRGVTNQKD-G-----------TFDLDEME  191 (285)
Q Consensus       135 ~~~~~------~g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~-~-----------~~d~~~l~  191 (285)
                      ++.+.      +++ +|+. ...||+.+.....+.....|...++.   .+..++.+.. +           ..++++++
T Consensus       133 lA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~  212 (453)
T PRK06943        133 MSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVR  212 (453)
T ss_pred             HHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHH
Confidence            98431      233 3443 67889876433322211222222221   1112222110 0           02357777


Q ss_pred             HHhcccccccCCceEEEEEec-ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE--EEe
Q psy5413         192 AKFSTADNIHCASTSLVCVEN-THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV--MFC  263 (285)
Q Consensus       192 ~~i~~~~~~~~~~~~~v~i~~-~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s  263 (285)
                      +.++.    +.+++++|++|+ +++..|..+.|.+++++|+++|++||+++|+||+++++     ....+++++.  +.+
T Consensus       213 ~~l~~----~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt  288 (453)
T PRK06943        213 RLFAE----RAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLC  288 (453)
T ss_pred             HHHHh----CCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEe
Confidence            77764    345899999999 59888666788999999999999999999999998844     3333555555  677


Q ss_pred             cccccCc---ceeEEeecCcccc
Q psy5413         264 LSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       264 ~sK~l~~---p~gg~~~~~~~~i  283 (285)
                      ++|++++   |+++++.. ++++
T Consensus       289 ~gKgl~gG~~Pi~av~~~-~ei~  310 (453)
T PRK06943        289 LSKGISGGYLPLSLVLSR-DAIF  310 (453)
T ss_pred             eehhhccCcccceEEEEc-HHHH
Confidence            7899876   77776654 4443

>PLN00144 acetylornithine transaminase

Probab=99.87  E-value=2e-21  Score=175.62  Aligned_cols=208  Identities=16%  Similarity=0.118  Sum_probs=140.8

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCC---CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcc
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD---DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~---~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~  137 (285)
                      |++++||.++    +.++.+|++.+++.+++...   ..+..++...++.+.|++..+.+.++|++|||+|++.|++++.
T Consensus        14 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~f~~sGseA~e~AlklAr   93 (382)
T PLN00144         14 GKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQVELAKRLVASSFADRVFFCNSGTEANEAAIKFAR   93 (382)
T ss_pred             CCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHhcCCCCeEEEeCCcHHHHHHHHHHHH
Confidence            5566666544    45779999999999887631   1112356688999999988777788999999999999999986


Q ss_pred             ccCC--------------CeEE-ecCCcceeeecccccccccccccccce---eeeeeecCCCCCCCHHHHHHHhccccc
Q psy5413         138 DRRD--------------SEII-VGDCSHIMLWEQGGASQTSVYSQIGRV---LMRGVTNQKDGTFDLDEMEAKFSTADN  199 (285)
Q Consensus       138 ~~~g--------------~~vi-~~~~~h~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~d~~~l~~~i~~~~~  199 (285)
                      ...+              .+|+ +...||+.+.....+.....+...+..   .+..++.     .|++++++.+..+  
T Consensus        94 ~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~~--  166 (382)
T PLN00144         94 KYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEY-----GNLEAARKLIQKG--  166 (382)
T ss_pred             HHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCC-----CCHHHHHHhcCCC--
Confidence            4322              2344 367889887543333211112111111   1122222     2789999888542  


Q ss_pred             ccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc--
Q psy5413         200 IHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA--  270 (285)
Q Consensus       200 ~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~--  270 (285)
                          ++++|++|+.+|++|....+.+++++|+++|++||+++|+||+++++     ....+..++.  +.+++|++++  
T Consensus       167 ----~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PDi~t~sK~l~~G~  242 (382)
T PLN00144        167 ----KTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAGGL  242 (382)
T ss_pred             ----CeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCCEEEecccccCCc
Confidence                78999999999996444457889999999999999999999998843     2221222222  7888899986  


Q ss_pred             ceeEEeecCccccc
Q psy5413         271 PVGSILAGPEEFIQ  284 (285)
Q Consensus       271 p~gg~~~~~~~~i~  284 (285)
                      |+|+ ++.++++++
T Consensus       243 pig~-v~~~~~~~~  255 (382)
T PLN00144        243 PIGA-VLVTEKVAS  255 (382)
T ss_pred             ceEE-EEEcHHHHh
Confidence            6555 555555543

>PLN02822 serine palmitoyltransferase

Probab=99.87  E-value=1.5e-21  Score=181.03  Aligned_cols=201  Identities=14%  Similarity=0.171  Sum_probs=152.3

Q ss_pred             cCCeeeeeccCCcCC--CcHHHHHHHHhcccC--C--C----CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHH
Q psy5413          64 VNIRTVDIRSDTISK--PTMEMKNYMFNCEVG--D--D----VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        64 ~~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~--~--~----~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al  133 (285)
                      .|++++||.++++.+  .+|++.+++.+++..  .  .    .|++.+.+.+|++.|+++++.+..++.++|..++..++
T Consensus       107 ~G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~~~i~~s~G~~a~~sai  186 (481)
T PLN02822        107 NGKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPDSILYSYGLSTIFSVI  186 (481)
T ss_pred             CCceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCCCCEEEECCHHHHHHHHH
Confidence            478999999876644  688999998877753  1  1    46677889999999999999877766667777899999


Q ss_pred             HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhccccccc--CCce-EEEEE
Q psy5413         134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIH--CAST-SLVCV  210 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~--~~~~-~~v~i  210 (285)
                      .+++ ++||.|+++..+|.++.....++         +.+++.++.+     |.++++..+++..+..  .+++ ++|++
T Consensus       187 ~a~~-~~gd~Ii~d~~~H~s~~~~~~ls---------~~~~~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivv  251 (481)
T PLN02822        187 PAFC-KKGDIIVADEGVHWGIQNGLYLS---------RSTIVYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYIVV  251 (481)
T ss_pred             HHhC-CCCCEEEEeCCccHHHHHHHHHc---------CCeEEEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEE
Confidence            9877 68999998888997765433344         6677777653     5566666554321110  1234 89999


Q ss_pred             ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhh-----hc-------ccCCeEEEecccccCcceeEEee
Q psy5413         211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAE-----VC-------ASVDTVMFCLSKGLGAPVGSILA  277 (285)
Q Consensus       211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~-----~~-------~~~dv~~~s~sK~l~~p~gg~~~  277 (285)
                      +++++++ |.+.|   +++|+++|++||+++|+||+|+ +..+     +.       ...|+++.|++|.++. .||+++
T Consensus       252 e~i~~~~-G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~-~GG~i~  326 (481)
T PLN02822        252 EAIYQNS-GQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALAT-EGGFCT  326 (481)
T ss_pred             ecCCCCC-CCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhh-CCeEEE
Confidence            9999998 99999   9999999999999999999988 1111     11       2457889999999985 678999


Q ss_pred             cCccccc
Q psy5413         278 GPEEFIQ  284 (285)
Q Consensus       278 ~~~~~i~  284 (285)
                      +++++++
T Consensus       327 g~~~ii~  333 (481)
T PLN02822        327 GSARVVD  333 (481)
T ss_pred             cCHHHHH
Confidence            9888765

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.87  E-value=3.7e-21  Score=172.30  Aligned_cols=199  Identities=18%  Similarity=0.213  Sum_probs=152.1

Q ss_pred             eeeeccCCcCCC-cHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc----C----CC-cEEEcCChHHHHHHHHHHcc
Q psy5413          68 TVDIRSDTISKP-TMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA----G----KE-AAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        68 ~~~~~~~~~~~~-~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~----g----~~-~~~~~~~Gs~a~~~al~~~~  137 (285)
                      +++|..+++..+ .+++.+++.+.......|.......+|++.+++++    |    .+ .+++++|+++++..++.+++
T Consensus         2 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~   81 (350)
T TIGR03537         2 LFDFGTGDPKEPTPPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFI   81 (350)
T ss_pred             eEeccCCCCCCCCCHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHc
Confidence            467888777765 67899998876544445765556788999999886    4    23 56888888999999988877


Q ss_pred             ccCC---CeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         138 DRRD---SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       138 ~~~g---~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                       .+|   |+|+++.++|.......         ...|.+++.++.++  ++.+|++++++++.+       ++++|++++
T Consensus        82 -~~g~~~d~Vl~~~p~y~~~~~~~---------~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-------~~~~i~i~~  144 (350)
T TIGR03537        82 -DPEEDRRRVIFGTPGYPVYERGA---------LFAGGEPTAVKLKKEDGFLLRLEKVEKSILE-------ETKIVWINY  144 (350)
T ss_pred             -CCCCCCceEEEcCCCCcchHHHH---------HhcCCEEEEcccCcccCCccCHHHHHHhhhh-------ccEEEEEeC
Confidence             466   68999988876554322         34588999888752  345899999999977       789999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------h-hcccCC--eEEEecccccCc--ceeEEeecCcc
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------E-VCASVD--TVMFCLSKGLGA--PVGSILAGPEE  281 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~-~~~~~d--v~~~s~sK~l~~--p~gg~~~~~~~  281 (285)
                      |+||| |.+++.+++++|+++|++||+++|+||+|..+.      . .....+  +++.|+||.++.  .+.|+++.+++
T Consensus       145 p~NPt-G~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~~~~  223 (350)
T TIGR03537       145 PHNPT-GATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAGDEK  223 (350)
T ss_pred             CCCCc-CcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecccccCCccccceeeecCHH
Confidence            99999 999999999999999999999999999986221      0 111223  448899998864  67788888776


Q ss_pred             ccc
Q psy5413         282 FIQ  284 (285)
Q Consensus       282 ~i~  284 (285)
                      +++
T Consensus       224 ~~~  226 (350)
T TIGR03537       224 LIS  226 (350)
T ss_pred             HHH
Confidence            654

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.87  E-value=3.6e-21  Score=175.49  Aligned_cols=207  Identities=16%  Similarity=0.135  Sum_probs=140.3

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCC---CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcc
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD---DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~---~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~  137 (285)
                      |++++||.++    +.++.+|++.+++.+++...   ......+...++++.|+++.+.++++|++||++|++.|++++.
T Consensus        39 G~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~sGseA~e~a~klar  118 (403)
T PRK05093         39 GKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDATFAERVFFANSGAEANEAAFKLAR  118 (403)
T ss_pred             CCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHhhCCCCEEEEeCchHHHHHHHHHHHH
Confidence            5677888764    66789999999998877531   1112345578999999999888889999999999999999874


Q ss_pred             cc------CCC-eEE-ecCCcceeeeccccccccccccccc---ceeeeeeecCCCCCCCHHHHHHHhcccccccCCceE
Q psy5413         138 DR------RDS-EII-VGDCSHIMLWEQGGASQTSVYSQIG---RVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       138 ~~------~g~-~vi-~~~~~h~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                      ..      .++ .++ +...+|+.+.....+...+.+...+   ...++.++.     .|++++++.+.+       +++
T Consensus       119 ~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~-------~~a  186 (403)
T PRK05093        119 RYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF-----NDLAAVKAVIDD-------HTC  186 (403)
T ss_pred             HHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC-----CCHHHHHHHhcC-------CeE
Confidence            32      123 333 4678898875322221111111111   112223322     389999999976       799


Q ss_pred             EEEEecccCCCCeee-CCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----hcccCCeE--EEecccccCc-ceeEEee
Q psy5413         207 LVCVENTHNYCGGTV-LPMQWLRELKARCQEHNIPVHMDGARLPLAE-----VCASVDTV--MFCLSKGLGA-PVGSILA  277 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~-~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----~~~~~dv~--~~s~sK~l~~-p~gg~~~  277 (285)
                      +|++|++++.+ |.. .+.+++++|+++|++||+++|+||+|+++..     .....++.  +.++||.+++ .+.|+++
T Consensus       187 aiiiep~~~~g-g~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G~rig~vv  265 (403)
T PRK05093        187 AVVVEPIQGEG-GVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSAKALGGGFPIGAML  265 (403)
T ss_pred             EEEEecccCCC-CCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEEEecccccCCcceEEEE
Confidence            99999766654 654 5889999999999999999999999884321     11122222  6788999976 3445555


Q ss_pred             cCccccc
Q psy5413         278 GPEEFIQ  284 (285)
Q Consensus       278 ~~~~~i~  284 (285)
                      .++++++
T Consensus       266 ~~~~i~~  272 (403)
T PRK05093        266 TTAEIAS  272 (403)
T ss_pred             EcHHHHh
Confidence            6666543

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.87  E-value=2.4e-21  Score=178.79  Aligned_cols=234  Identities=15%  Similarity=0.185  Sum_probs=152.8

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC----CCccCChh
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD----DVYLEDPT  102 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~----~~y~~~~~  102 (285)
                      |..+.++.+.+.|+..++.+++....|+.                  .+.++.+|+|.+|+.+++...    .....++.
T Consensus        39 p~~i~~a~G~~l~D~dG~~ylD~~~g~~~------------------~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~  100 (460)
T PRK06916         39 PLIIERGEGRKLYDVNGNEYYDGVSSIWL------------------NVHGHQVPELDEAIREQLNKIAHSTLLGLANVP  100 (460)
T ss_pred             CeeEEeccccEEEeCCCCEEEEcchhHHH------------------hhcCCCCHHHHHHHHHHHHhCCCccccccCCHH
Confidence            45556666666666544444443333332                  134789999999999887641    11224667


Q ss_pred             HHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHccc------cCCC-eEE-ecCCcceeeecccccccccccccccce
Q psy5413         103 CKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCD------RRDS-EII-VGDCSHIMLWEQGGASQTSVYSQIGRV  172 (285)
Q Consensus       103 ~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~------~~g~-~vi-~~~~~h~~~~~~~~~~~~~~~~~~~g~  172 (285)
                      ..+|.++|++++.  .+.++|++|||+|++.|++++..      .+|+ +|+ ....||+.+.....++....+...++.
T Consensus       101 ~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~  180 (460)
T PRK06916        101 SILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSS  180 (460)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCC
Confidence            8899999999874  36789999999999999999874      2344 344 367889877543333211222222211


Q ss_pred             ---eeeeeecCC------CC------CCCHHHHHHHhcccccccCCceEEEEEec-ccCCCCeeeCCHHHHHHHHHHHHH
Q psy5413         173 ---LMRGVTNQK------DG------TFDLDEMEAKFSTADNIHCASTSLVCVEN-THNYCGGTVLPMQWLRELKARCQE  236 (285)
Q Consensus       173 ---~~~~~~~~~------~~------~~d~~~l~~~i~~~~~~~~~~~~~v~i~~-~~n~~gG~~~~~~~l~~i~~la~~  236 (285)
                         .+..+|.+.      ..      ..+++++++.++.    +++++++|++|+ +++..|..+.|++++++|+++|++
T Consensus       181 ~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~  256 (460)
T PRK06916        181 LLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKE----KHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTK  256 (460)
T ss_pred             CCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHh----CCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHH
Confidence               112222211      00      0245677777764    445899999999 698875566789999999999999


Q ss_pred             cCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413         237 HNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       237 ~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                      ||+++|+||+++++     ....++.++.  +.+++|.+++   |+++++.. ++++
T Consensus       257 ~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~-~ei~  312 (460)
T PRK06916        257 YNVLFITDEVATGFGRTGKMFACEHENVTPDIMTAGKGLTGGYLPIAITVTT-DEIY  312 (460)
T ss_pred             cCCEEEeechhhCCCcCchhhHHHhcCCCCCeeeeehhhhcCccccceeeec-HHHH
Confidence            99999999998843     2233445544  6677899876   77776654 4443

>PRK07483 hypothetical protein; Provisional

Probab=99.87  E-value=4e-21  Score=176.49  Aligned_cols=233  Identities=14%  Similarity=0.105  Sum_probs=155.1

Q ss_pred             CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC----CCccCCh
Q psy5413          26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD----DVYLEDP  101 (285)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~----~~y~~~~  101 (285)
                      .|..+.++.+.++|+..++.+++.++.|+..                  +.++.+|+|.+++.+++...    ..+..++
T Consensus        12 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~   73 (443)
T PRK07483         12 TLPVAVAGEGIYLIDATGKRYLDASGGAAVS------------------CLGHSHPRVIAAIHAQIDRLAYAHTSFFTTE   73 (443)
T ss_pred             CCceEEeceEEEEEeCCCCEEEEcCccHhhh------------------ccCCCCHHHHHHHHHHHHhccCccccccCCH
Confidence            3777888899999987655555555444432                  34789999999999887632    1222466


Q ss_pred             hHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCC-eEEe-cCCcceeeecccccccccccccccc
Q psy5413         102 TCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDS-EIIV-GDCSHIMLWEQGGASQTSVYSQIGR  171 (285)
Q Consensus       102 ~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g  171 (285)
                      ...+|.++|+++..  .+.++|++|||+|++.|++++...      +++ +|+. ...||+.+.....++....+...++
T Consensus        74 ~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~  153 (443)
T PRK07483         74 PAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFA  153 (443)
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccC
Confidence            78899999999863  567899999999999999998743      343 3444 6788988754333321122222111


Q ss_pred             e---eeeeeecCCCCC-C------------CHHHHHHHhcccccccCCceEEEEEecccCC-CCeeeCCHHHHHHHHHHH
Q psy5413         172 V---LMRGVTNQKDGT-F------------DLDEMEAKFSTADNIHCASTSLVCVENTHNY-CGGTVLPMQWLRELKARC  234 (285)
Q Consensus       172 ~---~~~~~~~~~~~~-~------------d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~-~gG~~~~~~~l~~i~~la  234 (285)
                      .   .+..++....+. .            .++++++++..   .+.+++++|++|++++. .|....|++++++|+++|
T Consensus       154 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc  230 (443)
T PRK07483        154 PLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILE---LGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVC  230 (443)
T ss_pred             CCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHh---cCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHH
Confidence            1   112222211111 0            13566666642   13348999999999974 444667789999999999


Q ss_pred             HHcCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecC
Q psy5413         235 QEHNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGP  279 (285)
Q Consensus       235 ~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~  279 (285)
                      ++||+++|+||+++++     ....++.++.  +.+++|.+++   |+++++.++
T Consensus       231 ~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~  285 (443)
T PRK07483        231 DRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASD  285 (443)
T ss_pred             HHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeeeehhhhccCccccEEEEEcH
Confidence            9999999999998844     3344455555  6777899986   777766653

>PRK12414 putative aminotransferase; Provisional

Probab=99.87  E-value=3.6e-21  Score=174.48  Aligned_cols=201  Identities=15%  Similarity=0.133  Sum_probs=151.9

Q ss_pred             CeeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhH----cCC-----CcEEEcCChHHHHHHHHH
Q psy5413          66 IRTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKL----AGK-----EAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~----~g~-----~~~~~~~~Gs~a~~~al~  134 (285)
                      ..+++|..+.+.. +.+.+.+++.+.... ...|++.....+|++.++++    +|.     +.+++++||++++..++.
T Consensus        29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~  108 (384)
T PRK12414         29 HDALNLSQGAPNFAPDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAIS  108 (384)
T ss_pred             CCeEEcCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHH
Confidence            3568888777665 467888888765442 35676666667777777765    464     247899999999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      +++ .+||+|++++++|......   .      ...|.+++.++.++ ++.+|++++++++++       ++++|++++|
T Consensus       109 ~l~-~~gd~Vlv~~p~y~~~~~~---~------~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-------~~~~v~i~~p  171 (384)
T PRK12414        109 ALV-HPGDEVIYFEPSFDSYAPI---V------RLQGATPVAIKLSPEDFRVNWDEVAAAITP-------RTRMIIVNTP  171 (384)
T ss_pred             Hhc-CCCCEEEEeCCCccchHHH---H------HHcCCEEEEEecCccccccCHHHHHhhcCc-------ccEEEEEcCC
Confidence            887 6999999988887544321   1      23478888888753 456899999999976       7899999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc---ccCC--eEEEecccccCc--ceeEEeecC
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC---ASVD--TVMFCLSKGLGA--PVGSILAGP  279 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~---~~~d--v~~~s~sK~l~~--p~gg~~~~~  279 (285)
                      +||| |.+++.+++++|+++|++||+++|+||+|..+.       .+.   ...+  +++.|+||.++.  .+.|+++++
T Consensus       172 ~NPT-G~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~  250 (384)
T PRK12414        172 HNPS-ATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAP  250 (384)
T ss_pred             CCCC-CcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecC
Confidence            9999 999999999999999999999999999987211       111   1122  459999998863  677888888


Q ss_pred             ccccc
Q psy5413         280 EEFIQ  284 (285)
Q Consensus       280 ~~~i~  284 (285)
                      +++++
T Consensus       251 ~~l~~  255 (384)
T PRK12414        251 AELMD  255 (384)
T ss_pred             HHHHH
Confidence            87654

>PRK07046 aminotransferase; Validated

Probab=99.87  E-value=2.9e-21  Score=177.62  Aligned_cols=208  Identities=13%  Similarity=0.038  Sum_probs=145.3

Q ss_pred             cCCeeeeeccC----CcCCCcHHHHHHHHhcccCCC-CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccc
Q psy5413          64 VNIRTVDIRSD----TISKPTMEMKNYMFNCEVGDD-VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCD  138 (285)
Q Consensus        64 ~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~-~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~  138 (285)
                      +|++++||.++    ..++.+|+|.+++.+++.... ....++...++.+.|++.++.+.+.|++|||+|++.|++++..
T Consensus        73 DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~~~~~~~~~~~~lAe~l~~~~~~~~v~F~nSGtEA~e~AlrlAR~  152 (453)
T PRK07046         73 DGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGLTTMLPSEDAAWVGEELARRFGLPYWQVATTATDANRFVLRWARA  152 (453)
T ss_pred             CCCEEEEecccccccccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHH
Confidence            36777777544    357799999999998876422 2235677889999999998888899999999999999999987


Q ss_pred             cCCCeEEe--cCCcceeeeccccc-cc-cccccc-ccce------eeeeeecCCCCCCCHHHHHHHhcccccccCCceEE
Q psy5413         139 RRDSEIIV--GDCSHIMLWEQGGA-SQ-TSVYSQ-IGRV------LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       139 ~~g~~vi~--~~~~h~~~~~~~~~-~~-~~~~~~-~~g~------~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                      .+|+..|+  ...||+.+...... .. ...+.. ..+.      .+..++.     .|++.+++.+..      +++++
T Consensus       153 ~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----nd~~~l~~~l~~------~~vAa  221 (453)
T PRK07046        153 VTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-----NDLAALEAALAD------GDVAA  221 (453)
T ss_pred             hhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-----CCHHHHHHHhCC------CCeEE
Confidence            67765333  56788864321110 00 000000 0011      1112221     389999998853      27999


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC---ChhhhcccCCeE--EEecccccCc--ceeEEeecCc
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL---PLAEVCASVDTV--MFCLSKGLGA--PVGSILAGPE  280 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~---~~~~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~  280 (285)
                      |++|+.++..|....++++|++++++|++||+++|+||+++   ++....+..++.  +.+++|.+++  |.|++ ++++
T Consensus       222 vi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~~~~gv~PDi~t~gK~lggG~Pi~av-~g~~  300 (453)
T PRK07046        222 VLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYTRAHGLEPDFLVVGKPIAGGVPCAVY-GFSA  300 (453)
T ss_pred             EEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchhHHhCCCccceeehhhhcCCCcceee-eehH
Confidence            99999998875666778999999999999999999999986   444444444444  5677899987  87654 4555


Q ss_pred             ccc
Q psy5413         281 EFI  283 (285)
Q Consensus       281 ~~i  283 (285)
                      +++
T Consensus       301 ~i~  303 (453)
T PRK07046        301 ELA  303 (453)
T ss_pred             HHH
Confidence            554

>PLN02187 rooty/superroot1

Probab=99.87  E-value=9.3e-21  Score=175.25  Aligned_cols=196  Identities=16%  Similarity=0.138  Sum_probs=151.6

Q ss_pred             CCeeeeeccCCcCC-----CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHH
Q psy5413          65 NIRTVDIRSDTISK-----PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGN  129 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-----~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~  129 (285)
                      ++.+++|..+.+..     +.+++.+++.+....  ...|++.....++++.++++++        .+.+++++|+++|+
T Consensus        65 ~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al  144 (462)
T PLN02187         65 NKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGI  144 (462)
T ss_pred             CCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHH
Confidence            57899999987762     345788887765543  2467777778899999999873        23468899999999


Q ss_pred             HHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEE
Q psy5413         130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       130 ~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                      ..++.+++ ++||+|++++++|......   .      ...|.+++.++..  .++.+|++++++++++       ++++
T Consensus       145 ~~~~~~l~-~pGd~Vlv~~P~y~~y~~~---~------~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~-------~~~~  207 (462)
T PLN02187        145 EIVFESLA-RPNANILLPRPGFPHYDAR---A------AYSGLEVRKFDLLPEKEWEIDLEGIEAIADE-------NTVA  207 (462)
T ss_pred             HHHHHHhc-CCCCEEEEeCCCCccHHHH---H------HHcCCEEEEEeCccccCCccCHHHHHHhcCC-------CcEE
Confidence            99999987 6999999998887544321   2      2347788877753  3567899999999876       7899


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcccCCeE-EEecccccCc--ceeE
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVCASVDTV-MFCLSKGLGA--PVGS  274 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~~~dv~-~~s~sK~l~~--p~gg  274 (285)
                      |++++|+||| |.+++.+++++|+++|++||++||+||+|..+.          .+.....++ +.|+||.++.  .+.|
T Consensus       208 v~i~nP~NPT-G~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG  286 (462)
T PLN02187        208 MVVINPNNPC-GNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIG  286 (462)
T ss_pred             EEEeCCCCCC-CCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCccceeE
Confidence            9999999999 999999999999999999999999999987321          111122244 8999998665  6777


Q ss_pred             Eeec
Q psy5413         275 ILAG  278 (285)
Q Consensus       275 ~~~~  278 (285)
                      ++++
T Consensus       287 ~~v~  290 (462)
T PLN02187        287 WIAL  290 (462)
T ss_pred             EEEe
Confidence            7775

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.87  E-value=4.6e-21  Score=173.84  Aligned_cols=202  Identities=14%  Similarity=0.106  Sum_probs=152.0

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc----CC----C-cEEEcCChHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA----GK----E-AAIFVPSGTMGNLIA  132 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~----g~----~-~~~~~~~Gs~a~~~a  132 (285)
                      +..+++|..+.+.. +.+.+.+++.+....  ...|.......+|++.+++++    |.    + .+++++|+++++..+
T Consensus        30 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~  109 (385)
T PRK09276         30 GVDVISLGIGDPDLPTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHI  109 (385)
T ss_pred             CCCEEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHH
Confidence            45678998877665 566888888765532  245665555788999999987    32    2 256678888999999


Q ss_pred             HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413         133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCV  210 (285)
Q Consensus       133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i  210 (285)
                      +.+++ ++||+|+++++++......   .      ...|.+++.++..+  ++.+|++++++.+.+       ++++|++
T Consensus       110 ~~~~~-~~gd~Vl~~~P~y~~~~~~---~------~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~-------~~~~v~l  172 (385)
T PRK09276        110 PLAFV-NPGDVVLVPDPGYPVYKIG---T------IFAGGEPYFMPLKEENGFLPDLDAIPEDVAK-------KAKLMFI  172 (385)
T ss_pred             HHHhC-CCCCEEEEcCCCCcChHHH---H------HHcCCEEEEEecCCCCCCcCCHHHHHHhccc-------cceEEEE
Confidence            99887 6999999998876543321   2      34588888888743  345799999988876       7899999


Q ss_pred             ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc---c--cCCeEEEecccccCc--ceeEEe
Q psy5413         211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC---A--SVDTVMFCLSKGLGA--PVGSIL  276 (285)
Q Consensus       211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~---~--~~dv~~~s~sK~l~~--p~gg~~  276 (285)
                      ++|+||| |.+++.+++++|+++|++||+++|+||+|..+.       .+.   .  ...+++.|+||.++.  .+.|++
T Consensus       173 ~~p~NPt-G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~  251 (385)
T PRK09276        173 NYPNNPT-GAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFA  251 (385)
T ss_pred             eCCCCCC-CCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheee
Confidence            9999999 999999999999999999999999999987221       111   1  112458999999865  567888


Q ss_pred             ecCccccc
Q psy5413         277 AGPEEFIQ  284 (285)
Q Consensus       277 ~~~~~~i~  284 (285)
                      ++++++++
T Consensus       252 i~~~~l~~  259 (385)
T PRK09276        252 VGNADLIA  259 (385)
T ss_pred             eCCHHHHH
Confidence            88887764

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.87  E-value=2.2e-21  Score=177.35  Aligned_cols=198  Identities=18%  Similarity=0.189  Sum_probs=147.2

Q ss_pred             CCeeeeeccCCcCC--CcHHHHHHHHhcccCC--------CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK--PTMEMKNYMFNCEVGD--------DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~~--------~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~  134 (285)
                      |+++++|.+.++.+  ++|.+++++.++....        ..|+..+...+|++.+++++|.+..+++++|++|+..++.
T Consensus        45 ~~~~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~~~i~~~sG~~a~~~~i~  124 (410)
T PRK13392         45 PRRVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSNDAALS  124 (410)
T ss_pred             CceEEEEECCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHH
Confidence            45678888766555  7899999998765421        2344445688999999999999888999999999999998


Q ss_pred             Hccc-cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         135 THCD-RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       135 ~~~~-~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      .+.. .+|+.|+++..+|.+......         ..|.++..++.     .|.+.+++.++..   ..+++++|++++|
T Consensus       125 ~l~~~~~g~~vi~~~~~h~s~~~~~~---------~~g~~~~~~~~-----~d~~~l~~~l~~~---~~~~t~~v~i~~~  187 (410)
T PRK13392        125 TLGKLLPGCVILSDALNHASMIEGIR---------RSGAEKQVFRH-----NDLADLEEQLASV---DPDRPKLIAFESV  187 (410)
T ss_pred             HHhcCCCCCEEEEehhhhHHHHHHHH---------HcCCeEEEEeC-----CCHHHHHHHHHhc---cCCCCEEEEEeCC
Confidence            6642 367877777777876644222         23666555543     2566777766532   1127899999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh-----------hhcccCCeEEEecccccCcceeEEeecCcc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA-----------EVCASVDTVMFCLSKGLGAPVGSILAGPEE  281 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~-----------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~  281 (285)
                      +|++ |.+.|   +++|.++|++||+++|+||+|+ +..           ...+..|+++.|+||++++ .||+++++++
T Consensus       188 ~n~t-G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~-~GG~~~~~~~  262 (410)
T PRK13392        188 YSMD-GDIAP---IEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGC-LGGYIAASAD  262 (410)
T ss_pred             CCCC-ccccc---HHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhc-ccchhhcCHH
Confidence            9999 89999   9999999999999999999988 221           1123467888999999987 4688888877


Q ss_pred             ccc
Q psy5413         282 FIQ  284 (285)
Q Consensus       282 ~i~  284 (285)
                      +++
T Consensus       263 ~~~  265 (410)
T PRK13392        263 LID  265 (410)
T ss_pred             HHH
Confidence            654

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.87  E-value=6.1e-21  Score=172.02  Aligned_cols=201  Identities=18%  Similarity=0.255  Sum_probs=152.4

Q ss_pred             CeeeeeccCCcCCCcHHHHHH-HHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeE
Q psy5413          66 IRTVDIRSDTISKPTMEMKNY-MFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEI  144 (285)
Q Consensus        66 ~~~~~~~~~~~~~~~~~v~~a-~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~v  144 (285)
                      .-++||.+++.+   ..|.++ |.....++..|+.++.+.+||+.+++++|.+.++.+++|+.|+.+++.+.+ ++||+|
T Consensus        45 ~v~IDLlSDS~T---~aMs~~q~a~~~vGDd~Yagd~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v-~pGd~V  120 (460)
T PRK13237         45 DVYIDLLTDSGT---NAMSDRQWAGMMIGDEAYAGSRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAI-KPGQYV  120 (460)
T ss_pred             cEEEECcccCCc---hhccHHHHHHHhhcchhhcCCCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCC-CCcCEE
Confidence            467999999987   555555 334455788999999999999999999999999999999999998766655 689854


Q ss_pred             EecCCcceeeecccccccccccccccceeeeeee----------cCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         145 IVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT----------NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       145 i~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                        +..+|..+.... +       ...|..++.+.          .+.++.+|+++|+++|++.   +..++++|.++.++
T Consensus       121 --p~n~~f~Tt~ah-I-------~~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~---~~~~~~lV~a~itv  187 (460)
T PRK13237        121 --PGNMYFTTTRYH-Q-------ELNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEV---GAENIAYICLAVTV  187 (460)
T ss_pred             --CCccchHhhHHH-H-------HhCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccc---cCCccCceEEEEec
Confidence              555554443210 1       12244444442          2346789999999999863   23467788888888


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C-h-------------------hhhcccCCeEEEecccccCccee
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P-L-------------------AEVCASVDTVMFCLSKGLGAPVG  273 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~-~-------------------~~~~~~~dv~~~s~sK~l~~p~g  273 (285)
                      |..||..+|.+++++|.++|++||++||.|.+|. + .                   ......+|.+++|++|.++.+.|
T Consensus       188 n~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~G  267 (460)
T PRK13237        188 NLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIG  267 (460)
T ss_pred             ccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCc
Confidence            8888999999999999999999999999999977 2 1                   11235789999999999999888


Q ss_pred             EEeecC-cccc
Q psy5413         274 SILAGP-EEFI  283 (285)
Q Consensus       274 g~~~~~-~~~i  283 (285)
                      |+++.+ +++.
T Consensus       268 G~i~t~D~eL~  278 (460)
T PRK13237        268 GFLAMNDEELF  278 (460)
T ss_pred             eEEEECCHHHH
Confidence            777664 4543

>PRK07324 transaminase; Validated

Probab=99.87  E-value=1.4e-21  Score=176.36  Aligned_cols=201  Identities=16%  Similarity=0.126  Sum_probs=150.9

Q ss_pred             CCeeeeeccCCcCCCcH-HHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcC---CCcEEEcCChHHHHHHHHHHcccc
Q psy5413          65 NIRTVDIRSDTISKPTM-EMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAG---KEAAIFVPSGTMGNLIAIMTHCDR  139 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~~~-~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~al~~~~~~  139 (285)
                      +..++++.-+.+....| .+ +++.+.... ...|+...+..+|++.++++++   .+.+++++|+++|+..++.+++ .
T Consensus        25 ~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~-~  102 (373)
T PRK07324         25 ESCIDSLTLEELLALAGKNP-EAFYQELGQKKLTYGWIEGSPEFKEAVASLYQNVKPENILQTNGATGANFLVLYALV-E  102 (373)
T ss_pred             cCCCCCCcHHHHHhccCcch-HHHHHHHhcCCccCCCCCCCHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC-C
Confidence            34566666555554433 44 555544443 4577766678899999999874   2457899999999999999887 6


Q ss_pred             CCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEecccCCC
Q psy5413         140 RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYC  217 (285)
Q Consensus       140 ~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~  217 (285)
                      +||+|+++.++|.....   ..      ...|.+++.++..+  ++.+|++++++++++       ++++|++++|+|||
T Consensus       103 ~gd~Vl~~~P~y~~~~~---~~------~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~-------~~kli~i~~p~NPt  166 (373)
T PRK07324        103 PGDHVISVYPTYQQLYD---IP------ESLGAEVDYWQLKEENGWLPDLDELRRLVRP-------NTKLICINNANNPT  166 (373)
T ss_pred             CCCEEEEcCCCchhHHH---HH------HHcCCEEEEEecccccCCCCCHHHHHHhCCC-------CCcEEEEeCCCCCC
Confidence            89999998887754433   22      34588888888753  345799999998876       78999999999999


Q ss_pred             CeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh------hcccC--CeEEEecccccCc--ceeEEeecCccccc
Q psy5413         218 GGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE------VCASV--DTVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       218 gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~------~~~~~--dv~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                       |.+++.+++++|+++|++||+++|+||+|..+..      .....  .+++.|+||.++.  .+.|++++++++++
T Consensus       167 -G~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i~~~~~li~  242 (373)
T PRK07324        167 -GALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIAANEEVID  242 (373)
T ss_pred             -CCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEecchhhcCCccceeEEEecCHHHHH
Confidence             9999999999999999999999999999873211      11111  2458999999874  67788888877664

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.87  E-value=4.6e-21  Score=176.07  Aligned_cols=236  Identities=15%  Similarity=0.118  Sum_probs=152.3

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC----CCccCChh
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD----DVYLEDPT  102 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~----~~y~~~~~  102 (285)
                      |..+.++.+.+.|+..++.+++.+..++..                  +.++.+|++.+|+.+++...    ..+..++.
T Consensus        24 p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~   85 (443)
T PRK08360         24 PLVPVKAENAKVWDIEGNEYIDFLSDAAVQ------------------NVGHNNPRVVKAIKEQTDKLIHYTPIYGFPVE   85 (443)
T ss_pred             CceEEecceeEEEECCCCEEEEccccHhhc------------------ccCCCCHHHHHHHHHHHHhccCccccccCcHH
Confidence            666777888888886555544444443332                  45789999999999887632    22334667


Q ss_pred             HHHHHHHHHhHcCC--CcEEEcCChHHHHHHHHHHccccCCCeEEe--cCCcceeeeccccccc-ccccccccce--eee
Q psy5413         103 CKELQEKAAKLAGK--EAAIFVPSGTMGNLIAIMTHCDRRDSEIIV--GDCSHIMLWEQGGASQ-TSVYSQIGRV--LMR  175 (285)
Q Consensus       103 ~~~l~~~la~~~g~--~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~--~~~~h~~~~~~~~~~~-~~~~~~~~g~--~~~  175 (285)
                      ..++.+.|++..+.  +.++|++|||+|++.|++++...+|+..|+  ...||+.+.....+.. ...+...++.  .+.
T Consensus        86 ~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~  165 (443)
T PRK08360         86 PLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVH  165 (443)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcE
Confidence            88999999998753  578999999999999999998666765443  4688987644332221 1111111111  122


Q ss_pred             eeecCCCCC------------CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC-CHHHHHHHHHHHHHcCCeEE
Q psy5413         176 GVTNQKDGT------------FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL-PMQWLRELKARCQEHNIPVH  242 (285)
Q Consensus       176 ~~~~~~~~~------------~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~-~~~~l~~i~~la~~~gi~li  242 (285)
                      .++.+....            .+++.+++.++..  .+.+++++|++|+.+|++ |.++ +.+++++|.++|++||+++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~iAAvi~eP~~~~~-G~~~~~~~~l~~l~~l~~~~g~llI  242 (443)
T PRK08360        166 YIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGE--VYAEGVAALFAEPIQGDA-GMIVPPEDYFKKLKKILDEHGILLV  242 (443)
T ss_pred             EEeCCccccccccCchhhhHHHHHHHHHHHHHhc--cCCCCeEEEEECCccCCC-CCcCCCHHHHHHHHHHHHHcCCEEE
Confidence            222211000            2345566666431  123489999999999998 5554 57799999999999999999


Q ss_pred             EeCccCChhh-----hcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413         243 MDGARLPLAE-----VCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       243 ~Dea~~~~~~-----~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      +||+|+++..     .....++.  +.+++|.+++  |.|+ +++++++++
T Consensus       243 ~DEv~~g~gr~G~~~a~~~~~~~pDiitlsK~l~~G~piga-v~~~~~i~~  292 (443)
T PRK08360        243 VDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLGGGLPISA-TIGRAEIMD  292 (443)
T ss_pred             EeccccCCCcCccchhhhhcCCCCCEEEecccccCCceeEE-EEEcHHHHh
Confidence            9999884321     11122222  4577999987  5554 555666553

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.87  E-value=5.3e-21  Score=173.86  Aligned_cols=202  Identities=13%  Similarity=0.068  Sum_probs=153.2

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc----C----CC---cEEEcCChHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA----G----KE---AAIFVPSGTMGNLIA  132 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~----g----~~---~~~~~~~Gs~a~~~a  132 (285)
                      |+++++|..+.+.. +++.+.+++.+.......|....+..+|++.+++++    |    .+   .+++++|+++++..+
T Consensus        27 ~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~  106 (393)
T TIGR03538        27 SKPPIALSIGEPKHPTPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAF  106 (393)
T ss_pred             CCCeEEecCCCCCCCCCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHH
Confidence            56789998877765 566888888876554456776666788999999886    2    22   356788889999999


Q ss_pred             HHHccccCCCe--EEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEE
Q psy5413         133 IMTHCDRRDSE--IIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLV  208 (285)
Q Consensus       133 l~~~~~~~g~~--vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v  208 (285)
                      +.+++ ++|+.  |+++.+++.....   ..      ...|.+++.++..++  +.+|++++++++.+       ++++|
T Consensus       107 ~~~l~-~~gd~~~vlv~~P~y~~~~~---~~------~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-------~~k~i  169 (393)
T TIGR03538       107 AQAVI-NPGQAPLVVMPNPFYQIYEG---AA------LLAGAEPYFLNCTAENGFLPDFDAVPESVWR-------RCQLL  169 (393)
T ss_pred             HHHHc-CCCCcceEEecCCCCcchHH---HH------HhcCCeEEEeeccccCCCCCCHHHHHHHHhh-------cceEE
Confidence            99887 58885  7888877644332   22      345888888887433  46899999998876       78999


Q ss_pred             EEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh--------h---c--c---cC-C-eEEEecccccC-
Q psy5413         209 CVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE--------V---C--A---SV-D-TVMFCLSKGLG-  269 (285)
Q Consensus       209 ~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~--------~---~--~---~~-d-v~~~s~sK~l~-  269 (285)
                      ++++|+||| |.+++.+++++|+++|++||++||+||+|..+..        .   .  .   .. . +++.|+||.++ 
T Consensus       170 ~l~~p~NPt-G~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~  248 (393)
T TIGR03538       170 FVCSPGNPT-GAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNL  248 (393)
T ss_pred             EEeCCCCCc-CcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCC
Confidence            999999999 9999999999999999999999999999872210        0   0  0   11 2 44999999644 


Q ss_pred             -cceeEEeecCccccc
Q psy5413         270 -APVGSILAGPEEFIQ  284 (285)
Q Consensus       270 -~p~gg~~~~~~~~i~  284 (285)
                       |.+.|++++++++++
T Consensus       249 ~GlRvG~~i~~~~l~~  264 (393)
T TIGR03538       249 PGLRSGFVAGDAEILK  264 (393)
T ss_pred             cccceEEEecCHHHHH
Confidence             477888888887764

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.87  E-value=7.9e-21  Score=173.73  Aligned_cols=210  Identities=14%  Similarity=0.126  Sum_probs=142.5

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCCCCc-cCChhHHHHHHHHHhHcCC--CcEEEcCChHHHHHHHHHHcc
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGDDVY-LEDPTCKELQEKAAKLAGK--EAAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~~y-~~~~~~~~l~~~la~~~g~--~~~~~~~~Gs~a~~~al~~~~  137 (285)
                      |++++||.++    +.++.+|++.+++.+++.....+ ..++...+|.++|.+.++.  ++++|++|||+|++.|++++.
T Consensus        52 G~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr  131 (433)
T PRK00615         52 GKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGTSYGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLAR  131 (433)
T ss_pred             CCEEEEcccchhccccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHH
Confidence            5566666543    44779999999999887643332 2466788899999998754  478999999999999999998


Q ss_pred             ccCCCeEEe--cCCcceeeec-cccccc-ccc---cccccc-----eeeeeeecCCCCCCCHHHHHHHhcccccccCCce
Q psy5413         138 DRRDSEIIV--GDCSHIMLWE-QGGASQ-TSV---YSQIGR-----VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCAST  205 (285)
Q Consensus       138 ~~~g~~vi~--~~~~h~~~~~-~~~~~~-~~~---~~~~~g-----~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~  205 (285)
                      ..+|+..|+  ...||+.+.. .++++. ...   +....+     .....++     ..|++++++.+.+    +.+++
T Consensus       132 ~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~l~~~l~~----~~~~~  202 (433)
T PRK00615        132 GITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLP-----YNDFQIFQTVMNS----LGHRV  202 (433)
T ss_pred             HhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCC-----CCCHHHHHHHHHh----cCCce
Confidence            666764333  5778986532 222221 000   000000     0001111     2378999999865    23479


Q ss_pred             EEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----hhhcccCCeE--EEecccccCc--ceeEEee
Q psy5413         206 SLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----AEVCASVDTV--MFCLSKGLGA--PVGSILA  277 (285)
Q Consensus       206 ~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----~~~~~~~dv~--~~s~sK~l~~--p~gg~~~  277 (285)
                      ++|++|++++..|....+++++++|+++|++||+++|+||+++++    ....++.++.  +.+++|.+++  |.| +++
T Consensus       203 aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~G~~ga~~~~gv~PDi~~~gK~lggG~p~~-av~  281 (433)
T PRK00615        203 AGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVAQGGAAAIYHVKPDITVYGKILGGGLPAA-AVV  281 (433)
T ss_pred             EEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccccccHhHHHHhcCCCCCeEEEcccccCCccee-eee
Confidence            999999999987445566899999999999999999999998744    2233333333  4568899986  654 555


Q ss_pred             cCccccc
Q psy5413         278 GPEEFIQ  284 (285)
Q Consensus       278 ~~~~~i~  284 (285)
                      +++++++
T Consensus       282 ~~~~i~~  288 (433)
T PRK00615        282 AHKSIMD  288 (433)
T ss_pred             ecHHHHh
Confidence            6666543

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.87  E-value=3.6e-21  Score=175.79  Aligned_cols=198  Identities=19%  Similarity=0.220  Sum_probs=144.3

Q ss_pred             CCeeeeeccCCcCC--CcHHHHHHHHhcccC--C------CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK--PTMEMKNYMFNCEVG--D------DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~--~------~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~  134 (285)
                      ++++++|.+.++-+  ++|++.+++.++...  .      ..|+..+...+|++.+++++|.+..+++++|++|++.+++
T Consensus        45 ~~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ai~  124 (407)
T PRK09064         45 EREVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSNDATLS  124 (407)
T ss_pred             CceEEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHH
Confidence            46789998776555  689999999876542  1      1244677899999999999998888999999999999999


Q ss_pred             Hccc-cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         135 THCD-RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       135 ~~~~-~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      .+.. ++++.++.+...|.+.......         .+.++..++.     .|++++++.++..   ..+++++|+++++
T Consensus       125 ~l~~~~~~~~i~~~~~~h~s~~~~~~~---------~~~~~~~~~~-----~d~~~le~~l~~~---~~~~~~~v~~~~v  187 (407)
T PRK09064        125 TLAKLIPDCVIFSDELNHASMIEGIRR---------SRCEKHIFRH-----NDVAHLEELLAAA---DPDRPKLIAFESV  187 (407)
T ss_pred             HHhCCCCCCEEEEeCcchHHHHHHHHH---------cCCcEEEECC-----CCHHHHHHHHHhc---cCCCCeEEEEeCC
Confidence            8653 2455444454456544221111         2444444433     3788888888641   1126899999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh--------h---hcccCCeEEEecccccCcceeEEeecCcc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA--------E---VCASVDTVMFCLSKGLGAPVGSILAGPEE  281 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~--------~---~~~~~dv~~~s~sK~l~~p~gg~~~~~~~  281 (285)
                      +|++ |.+.|   +++|.++|++||+++|+||+|+ +..        .   +.+..|+++.|+||.+|+ .||+++++++
T Consensus       188 ~s~~-G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~-~GG~~~~~~~  262 (407)
T PRK09064        188 YSMD-GDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGV-MGGYIAGSAA  262 (407)
T ss_pred             CCCC-ccccC---HHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhc-cCceEecCHH
Confidence            9999 89999   9999999999999999999986 221        1   112457788999999986 5788888877


Q ss_pred             ccc
Q psy5413         282 FIQ  284 (285)
Q Consensus       282 ~i~  284 (285)
                      +++
T Consensus       263 ~~~  265 (407)
T PRK09064        263 LVD  265 (407)
T ss_pred             HHH
Confidence            654

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.87  E-value=4.1e-21  Score=177.27  Aligned_cols=213  Identities=15%  Similarity=0.181  Sum_probs=141.9

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccC--CC-C-ccCChhHHHHHHHHHhHcC-------CCcEEEcCChHHHH
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVG--DD-V-YLEDPTCKELQEKAAKLAG-------KEAAIFVPSGTMGN  129 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~--~~-~-y~~~~~~~~l~~~la~~~g-------~~~~~~~~~Gs~a~  129 (285)
                      |++++||.++    +.++.+|++.+|+.+++..  +. . ...++...+|.+.|++.+.       .++++|++|||+|+
T Consensus        63 G~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAv  142 (472)
T PRK08742         63 GRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGV  142 (472)
T ss_pred             CCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHH
Confidence            4556666544    4578999999999988652  11 1 1235668899999998864       35789999999999


Q ss_pred             HHHHHHcccc------CCC-eEE-ecCCcceeeecccccccccccccccce---eeeeeecCCCC------------CCC
Q psy5413         130 LIAIMTHCDR------RDS-EII-VGDCSHIMLWEQGGASQTSVYSQIGRV---LMRGVTNQKDG------------TFD  186 (285)
Q Consensus       130 ~~al~~~~~~------~g~-~vi-~~~~~h~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~------------~~d  186 (285)
                      ++|++++...      +++ +|| ....||+.+.....+...+.+...++.   .+..+|.+...            ..+
T Consensus       143 E~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  222 (472)
T PRK08742        143 EVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQA  222 (472)
T ss_pred             HHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHH
Confidence            9999998643      233 344 367889887543333211222222221   12222221110            013


Q ss_pred             HHHHHHHhcccccccCCceEEEEEec-ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE
Q psy5413         187 LDEMEAKFSTADNIHCASTSLVCVEN-THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV  260 (285)
Q Consensus       187 ~~~l~~~i~~~~~~~~~~~~~v~i~~-~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~  260 (285)
                      ++.+++.++.    +.+++++|++|+ .++.+|..+.|++++++++++|++||+++|+||+++++     ....++.++.
T Consensus       223 ~~~l~~~~~~----~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~  298 (472)
T PRK08742        223 ADALQALFEQ----SPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVM  298 (472)
T ss_pred             HHHHHHHHHh----CCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCC
Confidence            5677777754    345899999999 68887556788999999999999999999999998844     2334455655


Q ss_pred             --EEecccccCc---ceeEEeecCccc
Q psy5413         261 --MFCLSKGLGA---PVGSILAGPEEF  282 (285)
Q Consensus       261 --~~s~sK~l~~---p~gg~~~~~~~~  282 (285)
                        +.+++|.+++   |+++++.+ +++
T Consensus       299 PDiv~~gKgl~gG~~Plaav~~~-~ei  324 (472)
T PRK08742        299 PDLLCLSKGLTGGFLPLSAVLAT-QQL  324 (472)
T ss_pred             CCEEEEcccccCCCCCcceeecc-HHH
Confidence              7777899975   77776654 444

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.87  E-value=7e-21  Score=173.72  Aligned_cols=201  Identities=15%  Similarity=0.125  Sum_probs=152.6

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc----CC-----C-cEEEcCChHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA----GK-----E-AAIFVPSGTMGNLI  131 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~----g~-----~-~~~~~~~Gs~a~~~  131 (285)
                      +..+++|..+.+.. +.+.+.+++.+....  ...|. ..+..+|++.+++++    |.     + .+++++|+++++..
T Consensus        43 ~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~~~~~~Y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~  121 (410)
T PRK06290         43 DMELIDMGVGEPDEMADESVVEVLCEEAKKPENRGYA-DNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAM  121 (410)
T ss_pred             CCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC-CCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHH
Confidence            45689999877766 556778877754432  23465 367889999999985    32     2 35777778899999


Q ss_pred             HHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413         132 AIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVC  209 (285)
Q Consensus       132 al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~  209 (285)
                      ++.+++ .+||.|+++.++|.....   ..      ...|.+++.++.++  ++.+|++++++++.+       ++++|+
T Consensus       122 ~~~~~~-~~gd~Vlv~~P~y~~~~~---~~------~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~-------~~k~i~  184 (410)
T PRK06290        122 LPSCFI-NPGDVTLMTVPGYPVTGT---HT------KYYGGEVYNLPLLEENNFLPDLDSIPKDIKE-------KAKLLY  184 (410)
T ss_pred             HHHHhC-CCCCEEEEeCCCCccHHH---HH------HHcCCEEEEEecCCCcCCcCCHHHHHHhhcc-------cceEEE
Confidence            998877 699999998887654332   22      34588999988754  345799999998876       789999


Q ss_pred             EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---------hhcc--cCCeEEEecccccCc--ceeEEe
Q psy5413         210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---------EVCA--SVDTVMFCLSKGLGA--PVGSIL  276 (285)
Q Consensus       210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~~--~~dv~~~s~sK~l~~--p~gg~~  276 (285)
                      +++|+||| |.+++.+++++|+++|++||++||+||+|..+.         .+..  ..++++.|+||.++.  .+.|++
T Consensus       185 l~nP~NPT-G~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~i  263 (410)
T PRK06290        185 LNYPNNPT-GAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFV  263 (410)
T ss_pred             EECCCCCC-CcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhheEeE
Confidence            99999999 999999999999999999999999999987221         1111  233669999999864  677899


Q ss_pred             ecCccccc
Q psy5413         277 AGPEEFIQ  284 (285)
Q Consensus       277 ~~~~~~i~  284 (285)
                      ++++++++
T Consensus       264 i~~~~l~~  271 (410)
T PRK06290        264 VGNELIVK  271 (410)
T ss_pred             EeCHHHHH
Confidence            88887664

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.86  E-value=7.7e-21  Score=174.85  Aligned_cols=251  Identities=14%  Similarity=0.116  Sum_probs=158.1

Q ss_pred             ccchhhhhhcccC--CCCCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHH
Q psy5413          11 SHRQTKIAREVLT--LPTPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMF   88 (285)
Q Consensus        11 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~   88 (285)
                      -+.|++.......  ...|..+.++.+.+.|+..++.+++.++.++..                  +.++.+|+|.+++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~i~~ai~   65 (442)
T TIGR00709         4 LSRQNEMESNVRSYPRKLPTAFAKAQGCWVTDVEGKEYLDFLAGAGTL------------------ALGHNHPNMKQKIL   65 (442)
T ss_pred             ccHHHHHHhhhhccccCCCceEEeccccEEEeCCCCEEEEccccHhhh------------------cCCCCCHHHHHHHH
Confidence            3455555333322  223677888899999987655555554444432                  34789999999999


Q ss_pred             hcccC-C---CCccCChhHHHHHHHHHhHcCC----CcE-EEcCChHHHHHHHHHHccccCCCe-EEe-cCCcceeeecc
Q psy5413          89 NCEVG-D---DVYLEDPTCKELQEKAAKLAGK----EAA-IFVPSGTMGNLIAIMTHCDRRDSE-IIV-GDCSHIMLWEQ  157 (285)
Q Consensus        89 ~~~~~-~---~~y~~~~~~~~l~~~la~~~g~----~~~-~~~~~Gs~a~~~al~~~~~~~g~~-vi~-~~~~h~~~~~~  157 (285)
                      +++.. .   ..+..++...+|.++|++++..    ... ++++|||+|++.|++++...+|+. |+. ...||+.+...
T Consensus        66 ~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~  145 (442)
T TIGR00709        66 DYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGA  145 (442)
T ss_pred             HHHHhccCccccccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHH
Confidence            88763 1   1223567788999999998742    233 556999999999999998666653 443 67889877543


Q ss_pred             cccccccccccccce---eeeeeecCCCCC--------CCHH----HHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413         158 GGASQTSVYSQIGRV---LMRGVTNQKDGT--------FDLD----EMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL  222 (285)
Q Consensus       158 ~~~~~~~~~~~~~g~---~~~~~~~~~~~~--------~d~~----~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~  222 (285)
                      ..+.....+...++.   .+..++......        .+.+    .+++.++. .....+++++|++|++++..|+.+.
T Consensus       146 ~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iaavi~Epi~g~~G~~~~  224 (442)
T TIGR00709       146 LAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIED-VESGVDKPAAVILEAIQGEGGVVAA  224 (442)
T ss_pred             HhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHh-hccCCCceEEEEEccccCCCCCccC
Confidence            333211111111111   112222211111        1122    23333321 0112347999999999998867778


Q ss_pred             CHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCCeE--EEecccccCc--ceeEEeecCc
Q psy5413         223 PMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVDTV--MFCLSKGLGA--PVGSILAGPE  280 (285)
Q Consensus       223 ~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~  280 (285)
                      |.+++++|+++|++||+++|+||+++++.     ...++.++.  +.+++|++++  |+|+++..++
T Consensus       225 ~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~~G~Pigav~~~~~  291 (442)
T TIGR00709       225 PSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGGGLPLAVLLIAPE  291 (442)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEEcccccCCcccEEEEEchH
Confidence            99999999999999999999999988432     222334433  5557899987  8888776543

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.86  E-value=5.2e-21  Score=173.81  Aligned_cols=201  Identities=14%  Similarity=0.141  Sum_probs=154.6

Q ss_pred             CeeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----C----CCcEEEcCChHHHHHHHHHH
Q psy5413          66 IRTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----G----KEAAIFVPSGTMGNLIAIMT  135 (285)
Q Consensus        66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g----~~~~~~~~~Gs~a~~~al~~  135 (285)
                      ..+++|..+.+.. +++.+.+++.+.... ...|.+.+...+|++.+++++    |    .+.+++++|+++|+..++.+
T Consensus        33 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~  112 (391)
T PRK08361         33 ENVISLGIGEPDFDTPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFES  112 (391)
T ss_pred             cCeEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHH
Confidence            3568888877776 456788887765443 235766677889999999986    3    23568899999999999998


Q ss_pred             ccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         136 HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       136 ~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      ++ ++|+.|++++++|.......         ...|.+++.++.++  ++.+|++++++++++       ++++|++++|
T Consensus       113 l~-~~g~~Vlv~~p~y~~~~~~~---------~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~-------~~~~v~i~~p  175 (391)
T PRK08361        113 LL-EEGDEVIIPDPAFVCYVEDA---------KIAEAKPIRIPLREENEFQPDPDELLELITK-------RTRMIVINYP  175 (391)
T ss_pred             hc-CCCCEEEEcCCCCcccHHHH---------HHcCCEEEEEecCCccCCCCCHHHHHHhccc-------ccEEEEEeCC
Confidence            77 58999999998876554322         23488888888754  346899999999987       7899999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcccCCeEEEecccccCc--ceeEEeecCcc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVCASVDTVMFCLSKGLGA--PVGSILAGPEE  281 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~~~dv~~~s~sK~l~~--p~gg~~~~~~~  281 (285)
                      +||| |.++|.+.+++|+++|+++++++|+||+|..+.          ......++++.|+||.++.  .+.|+++++++
T Consensus       176 ~NPt-G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~~~~  254 (391)
T PRK08361        176 NNPT-GATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIAPEQ  254 (391)
T ss_pred             CCCC-CcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhccCHH
Confidence            9999 899999999999999999999999999986221          1111234558999999875  45678888777


Q ss_pred             ccc
Q psy5413         282 FIQ  284 (285)
Q Consensus       282 ~i~  284 (285)
                      +++
T Consensus       255 ~~~  257 (391)
T PRK08361        255 VIK  257 (391)
T ss_pred             HHH
Confidence            654

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.86  E-value=5.6e-21  Score=174.75  Aligned_cols=197  Identities=15%  Similarity=0.135  Sum_probs=152.2

Q ss_pred             cCCeeeeeccCCcC-----CCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcCC--------------CcEEEc
Q psy5413          64 VNIRTVDIRSDTIS-----KPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAGK--------------EAAIFV  122 (285)
Q Consensus        64 ~~~~~~~~~~~~~~-----~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~--------------~~~~~~  122 (285)
                      .++.+++|..+.+.     .+.+.+.+++.+.+..  ...|....+..+|++.++++++.              +.++++
T Consensus        31 ~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it  110 (412)
T PTZ00433         31 SPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLC  110 (412)
T ss_pred             CCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEe
Confidence            36788999998886     3677899998776543  34576555688999999998752              345888


Q ss_pred             CChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccc
Q psy5413         123 PSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNI  200 (285)
Q Consensus       123 ~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~  200 (285)
                      +|+++++..++.+++ .+||+|+++.++|......   .      ...|.+++.++..+  ++.+|++++++++++    
T Consensus       111 ~G~~~al~~~~~~~~-~~gd~vlv~~P~y~~~~~~---~------~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~----  176 (412)
T PTZ00433        111 SGVSHAILMALTALC-DEGDNILVPAPGFPHYETV---C------KAYGIEMRFYNCRPEKDWEADLDEIRRLVDD----  176 (412)
T ss_pred             CChHHHHHHHHHHhc-CCCCEEEEccCCcccHHHH---H------HHcCCEEEEEecCccccCcCCHHHHHHHhcc----
Confidence            999999999999887 6899999998887554332   2      34588888887643  457899999999876    


Q ss_pred             cCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcccCC-eEEEecccccC
Q psy5413         201 HCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVCASVD-TVMFCLSKGLG  269 (285)
Q Consensus       201 ~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~~~d-v~~~s~sK~l~  269 (285)
                         ++++|++++|+||| |.+++.+++++|+++|++||++||+||+|..+.          .+....+ +++.|+||.++
T Consensus       177 ---~~~~i~~~~p~NPt-G~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~  252 (412)
T PTZ00433        177 ---RTKALIMTNPSNPC-GSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLV  252 (412)
T ss_pred             ---CceEEEEeCCCCCC-CcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcC
Confidence               78999999999999 899999999999999999999999999987321          1111223 44899999874


Q ss_pred             c--ceeEEeec
Q psy5413         270 A--PVGSILAG  278 (285)
Q Consensus       270 ~--p~gg~~~~  278 (285)
                      .  .+.|+++.
T Consensus       253 ~pGlRlG~~i~  263 (412)
T PTZ00433        253 VPGWRLGWLLL  263 (412)
T ss_pred             CCCeeEEEEEE
Confidence            4  66777764

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.86  E-value=6.1e-21  Score=174.55  Aligned_cols=238  Identities=16%  Similarity=0.145  Sum_probs=157.5

Q ss_pred             CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC--CCc--cCCh
Q psy5413          26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD--DVY--LEDP  101 (285)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~y--~~~~  101 (285)
                      .|..+.++.+.+.|+..++.+++....|+.-                  +.++.+|++.+++.+++...  ..+  ..++
T Consensus        22 ~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~   83 (421)
T PRK09792         22 CNFFAQSAENATLKDVEGNEYIDFAAGIAVL------------------NTGHRHPDLVAAVEQQLQQFTHTAYQIVPYE   83 (421)
T ss_pred             CCeeEEeccccEEEeCCCCEEEEccCchhhh------------------cCCCCCHHHHHHHHHHHHhccCcccCccCCH
Confidence            3566778888888887666665555544442                  33779999999999887632  112  2456


Q ss_pred             hHHHHHHHHHhHcC---CCcEEEcCChHHHHHHHHHHccccCCCe-EEe-cCCcceeeecccccccc-ccccccc-----
Q psy5413         102 TCKELQEKAAKLAG---KEAAIFVPSGTMGNLIAIMTHCDRRDSE-IIV-GDCSHIMLWEQGGASQT-SVYSQIG-----  170 (285)
Q Consensus       102 ~~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi~-~~~~h~~~~~~~~~~~~-~~~~~~~-----  170 (285)
                      ...++.+.|++...   .+.++|++|||+|++.|++++...+|+. |+. ...||+.+.....+... ..+...+     
T Consensus        84 ~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~  163 (421)
T PRK09792         84 SYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPG  163 (421)
T ss_pred             HHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCC
Confidence            67889999998864   2567999999999999999998666654 343 57789877543322211 1122211     


Q ss_pred             ceeeeeeecCCCC---CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCcc
Q psy5413         171 RVLMRGVTNQKDG---TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGAR  247 (285)
Q Consensus       171 g~~~~~~~~~~~~---~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~  247 (285)
                      +...+++|....+   ..+++.+++.+++.  .+.+++++|++|+.++++|..+.|.+++++|+++|++||+++|+||++
T Consensus       164 ~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~--~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~  241 (421)
T PRK09792        164 SVYHVPYPSDLHGISTQDSLDAIERLFKSD--IEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQ  241 (421)
T ss_pred             CcEEcCCCcccccccHHHHHHHHHHHHHhc--cCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence            2222233321111   12457788877531  012379999999999998445669999999999999999999999998


Q ss_pred             CChh-----hhcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413         248 LPLA-----EVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       248 ~~~~-----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      +++.     ...+..++.  +.+++|.+++  |+|++ ++++++++
T Consensus       242 tg~gr~G~~~a~~~~~~~pDi~t~gK~l~~G~pigav-~~~~~i~~  286 (421)
T PRK09792        242 SGFARTGKLFAMDHYADKPDLMTMAKSLAGGMPLSGV-VGNANIMD  286 (421)
T ss_pred             cCCCCCCchhHHHhcCCCCcEEEeehhhcCCCceEEE-EEcHHHHh
Confidence            8331     122222222  6788899987  77764 45555543

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.86  E-value=1e-20  Score=172.76  Aligned_cols=197  Identities=15%  Similarity=0.076  Sum_probs=151.0

Q ss_pred             cCCeeeeeccCCcC-----CCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcCC--------CcEEEcCChHHH
Q psy5413          64 VNIRTVDIRSDTIS-----KPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAGK--------EAAIFVPSGTMG  128 (285)
Q Consensus        64 ~~~~~~~~~~~~~~-----~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~--------~~~~~~~~Gs~a  128 (285)
                      .++.+++|..+.+.     .+++.+.+++.+....  ...|++.....+|++.++++++.        +.+++++|++++
T Consensus        30 ~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~a  109 (409)
T PLN00143         30 DHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHA  109 (409)
T ss_pred             CCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHH
Confidence            35788999988886     4666888888776543  24576667788899999998732        346888899999


Q ss_pred             HHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceE
Q psy5413         129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       129 ~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                      +..++.+++ .+||.|+++.++|......   .      ...|.+++.++..  .++.+|++++++++++       +++
T Consensus       110 l~~~~~~l~-~~gd~v~v~~P~y~~~~~~---~------~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~  172 (409)
T PLN00143        110 AEIIIKVLA-RPEANILLPRPGFPDVETY---A------IFHHLEIRHFDLLPEKGWEVDLDAVEAIADE-------NTI  172 (409)
T ss_pred             HHHHHHHHc-CCCCEEEEcCCCCcCHHHH---H------HHcCCEEEEEeccCCCCCcCCHHHHHHhccc-------CCE
Confidence            999999887 5899999988886544321   2      2347788887753  3456899999998876       788


Q ss_pred             EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcccCCe-EEEecccccCc--cee
Q psy5413         207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVCASVDT-VMFCLSKGLGA--PVG  273 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~~~dv-~~~s~sK~l~~--p~g  273 (285)
                      ++++++|+||| |.+++.+++++|+++|++||+++|+||+|..+.          .+.....+ ++.|+||.++.  .+.
T Consensus       173 ~~~~~nP~NPT-G~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRv  251 (409)
T PLN00143        173 AMVIINPGNPC-GSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGL  251 (409)
T ss_pred             EEEEECCCCCC-CCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccce
Confidence            99999999999 999999999999999999999999999987221          11111133 48999998555  677


Q ss_pred             EEeec
Q psy5413         274 SILAG  278 (285)
Q Consensus       274 g~~~~  278 (285)
                      |++++
T Consensus       252 G~~v~  256 (409)
T PLN00143        252 GWLVT  256 (409)
T ss_pred             EEEEe
Confidence            77776

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.86  E-value=5.5e-21  Score=171.73  Aligned_cols=183  Identities=18%  Similarity=0.274  Sum_probs=141.4

Q ss_pred             CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCC---------------e
Q psy5413          79 PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDS---------------E  143 (285)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~---------------~  143 (285)
                      .+++|.+++.+...  ..+...+...++++.+++++|.+.+++++||++|+.+++++++ ++||               +
T Consensus        25 ~~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~-~~Gd~~~~~~~~~s~~~~~e  101 (363)
T TIGR01437        25 VSDEVADAQKRGAQ--NYFEIKELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVI-TRGNRYLVENLHDSKIEVNE  101 (363)
T ss_pred             CCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHh-cCCCcchhhcccccccccce
Confidence            68899999988753  2334556788999999999999999999999999999999987 5787               6


Q ss_pred             EEecCCcceeeec--ccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEE-EecccCCCCee
Q psy5413         144 IIVGDCSHIMLWE--QGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVC-VENTHNYCGGT  220 (285)
Q Consensus       144 vi~~~~~h~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~-i~~~~n~~gG~  220 (285)
                      ||++.+ |...+.  .....      ...|.+++.++.  ++.+|+++++++|++       +|++|+ +++++|++ |.
T Consensus       102 Vi~~~~-~~~~~~~~~~~~~------~~~g~~~v~v~~--~~~~d~~~le~ai~~-------~t~ai~~v~~~~~~~-g~  164 (363)
T TIGR01437       102 VVLPKG-HNVDYGAPVETMV------RLGGGKVVEAGY--ANECSAEQLEAAITE-------KTAAILYIKSHHCVQ-KS  164 (363)
T ss_pred             EEEECc-cchhcCCchHHHH------HhcCCeEEEEcC--CCCCCHHHHHHhcCh-------hceEEEEEecCCCCc-CC
Confidence            666542 222211  00111      234777777765  345899999999988       778666 56778888 88


Q ss_pred             eCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhh-hcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         221 VLPMQWLRELKARCQEHNIPVHMDGARL-PLAE-VCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       221 ~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~-~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      +.|   +++|+++|++||+++|+|++|. .+.. ...++|++++|+||+|++|.+|++++++++++
T Consensus       165 ~~~---~~~i~~~a~~~gi~vivD~a~~~~~~~~~~~g~D~~~~S~~K~l~gp~~G~l~~~~~~i~  227 (363)
T TIGR01437       165 MLS---VEDAAQVAQEHNLPLIVDAAAEEDLQKYYRLGADLVIYSGAKAIEGPTSGLVLGKKKYIE  227 (363)
T ss_pred             cCC---HHHHHHHHHHcCCeEEEECCCCCchHHHHHcCCCEEEEeCCcccCCCceEEEEEcHHHHH
Confidence            999   8999999999999999999998 3321 12358999999999999988999998877654

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.86  E-value=1.9e-21  Score=175.04  Aligned_cols=198  Identities=17%  Similarity=0.164  Sum_probs=152.1

Q ss_pred             Ceeeeecc-CCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCCC
Q psy5413          66 IRTVDIRS-DTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRDS  142 (285)
Q Consensus        66 ~~~~~~~~-~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g~  142 (285)
                      +.+++|.. +++.++++.+++++.+.......| +.....+|++.++++++.+.  +++++|+++++..++.+++ ++||
T Consensus        29 ~~~i~l~~nen~~~~~~~v~~a~~~~~~~~~~Y-p~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~-~~gd  106 (366)
T PRK01533         29 HSFVKLASNENPFGCSPRVLDELQKSWLDHALY-PDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVL-KAGD  106 (366)
T ss_pred             CceEEeCCCCCCCCCCHHHHHHHHHHHHhcCcC-CCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhc-CCCC
Confidence            46788875 445557889999988765444445 45668899999999998654  5888888999999999887 5899


Q ss_pred             eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413         143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL  222 (285)
Q Consensus       143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~  222 (285)
                      .|++.++++......   +      ...|.+++.++.+ ++.+|++++++++++       ++++|++++|+||| |.++
T Consensus       107 ~vlv~~P~y~~~~~~---~------~~~g~~v~~v~~~-~~~~d~~~l~~~~~~-------~~~~v~i~~P~NPT-G~~~  168 (366)
T PRK01533        107 NIVTAGATFPQYRHH---A------IIEGCEVKEVALN-NGVYDLDEISSVVDN-------DTKIVWICNPNNPT-GTYV  168 (366)
T ss_pred             EEEEcCCcHHHHHHH---H------HHcCCEEEEeecC-CCCcCHHHHHHHhCc-------CCcEEEEeCCCCCC-CCCc
Confidence            999988876544332   2      3458899998884 556899999999876       78999999999999 9999


Q ss_pred             CHHHHHHHHHHHHHcCCeEEEeCccCChh---------hhcccC-C-eEEEecccccCc--ceeEEeecCccccc
Q psy5413         223 PMQWLRELKARCQEHNIPVHMDGARLPLA---------EVCASV-D-TVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       223 ~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~~~~-d-v~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      +.+++++|+++|++++ ++|+||+|..+.         ...... . +++.|+||.++.  .+.|++++++++++
T Consensus       169 ~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~  242 (366)
T PRK01533        169 NDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIE  242 (366)
T ss_pred             CHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCHHHHH
Confidence            9999999999998877 577899976211         111222 3 448999998874  67888888887764

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.86  E-value=7.3e-21  Score=175.52  Aligned_cols=234  Identities=14%  Similarity=0.081  Sum_probs=152.4

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC-C---CCccCChh
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG-D---DVYLEDPT  102 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~-~---~~y~~~~~  102 (285)
                      |..+.++.+.+.|+..++.+++.+..|+..                  +.++.||+|.+++.+++.. .   .....++.
T Consensus        46 p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~  107 (464)
T PRK06938         46 PLALKRARGIYVEDVEGRQFIDCLAGAGTL------------------ALGHNHPVVIEAIQQVLADELPLHTLDLTTPV  107 (464)
T ss_pred             CceEEeccccEEEeCCCCEEEEccCCcccc------------------ccCCCCHHHHHHHHHHHHhhhcccccccCCHH
Confidence            555666677777765544444443333321                  3477999999999988752 1   11224677


Q ss_pred             HHHHHHHHHhHcCC-----CcEEEc-CChHHHHHHHHHHccccCCCe-EE-ecCCcceeeecccccccccccccccc---
Q psy5413         103 CKELQEKAAKLAGK-----EAAIFV-PSGTMGNLIAIMTHCDRRDSE-II-VGDCSHIMLWEQGGASQTSVYSQIGR---  171 (285)
Q Consensus       103 ~~~l~~~la~~~g~-----~~~~~~-~~Gs~a~~~al~~~~~~~g~~-vi-~~~~~h~~~~~~~~~~~~~~~~~~~g---  171 (285)
                      ..+|.+++.+....     +..+|+ +|||+|++.|++++...+|+. |+ +...||+.+.....+.....+...++   
T Consensus       108 ~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~  187 (464)
T PRK06938        108 KDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALL  187 (464)
T ss_pred             HHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCC
Confidence            88888888887642     245565 799999999999988666654 33 35788987754333321111211111   


Q ss_pred             eeeeeeecCCCC------------CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCC
Q psy5413         172 VLMRGVTNQKDG------------TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNI  239 (285)
Q Consensus       172 ~~~~~~~~~~~~------------~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi  239 (285)
                      ..+..++.+...            ..+++.+++.+++. ..+.+++++|++|+.++..|..+.|.+++++++++|++||+
T Consensus       188 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~gi  266 (464)
T PRK06938        188 PGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDP-ESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGI  266 (464)
T ss_pred             CCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhh-ccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence            112233321111            02367788888541 11123799999999999874556679999999999999999


Q ss_pred             eEEEeCccCCh-----hhhcccCCeE--EEecccccCc--ceeEEeecC
Q psy5413         240 PVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA--PVGSILAGP  279 (285)
Q Consensus       240 ~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~  279 (285)
                      ++|+||+++++     ....++.++.  +.+++|++++  |+++++..+
T Consensus       267 LlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gKglggG~PlsAv~~~~  315 (464)
T PRK06938        267 PLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAIGGSLPLAVVVYRE  315 (464)
T ss_pred             EEEEeccccCCCcCcHHHHHHhcCCCCCEEEeeccccCCCceEEEeehh
Confidence            99999998843     3444556666  7777899987  988887653

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.86  E-value=1.2e-20  Score=171.47  Aligned_cols=204  Identities=12%  Similarity=0.048  Sum_probs=153.4

Q ss_pred             CeeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcC----C-----CcEEEcCChHHHHHHHHH
Q psy5413          66 IRTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAG----K-----EAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g----~-----~~~~~~~~Gs~a~~~al~  134 (285)
                      +.+++|..+.+.. +.+.+.+++.+.... ...|.+.....++++.++++++    .     +.+++++|+++|+..++.
T Consensus        30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~  109 (391)
T PRK07309         30 PGILKLTLGEPDFTTPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLT  109 (391)
T ss_pred             CCeEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHH
Confidence            3578888777665 455777887765543 2356656667889999999863    1     357889999999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      +++ .+|++|++.++.|.....   ..      +..|.+++.++.++ ++.+|++++++++++    +.+++++|++++|
T Consensus       110 ~~~-~~gd~vl~~~p~y~~~~~---~~------~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~~~~i~l~~P  175 (391)
T PRK07309        110 AIL-EPGDKVLLPAPAYPGYEP---IV------NLVGAEIVEIDTTENDFVLTPEMLEKAILE----QGDKLKAVILNYP  175 (391)
T ss_pred             Hhc-CCCCEEEEeCCCCcchHH---HH------HHcCCEEEEEecCCcCCcCCHHHHHHHhhc----cCCCeEEEEEECC
Confidence            876 689999998887654432   22      34588888888644 346899999999865    2236899999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhcc-cCC--eEEEecccccCc--ceeEEeecCcc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVCA-SVD--TVMFCLSKGLGA--PVGSILAGPEE  281 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~~-~~d--v~~~s~sK~l~~--p~gg~~~~~~~  281 (285)
                      +||| |.+++.+++++|+++|++||+++|+||+|..+.       .+.. ..+  +++.|+||.++.  .+.|+++++++
T Consensus       176 ~NPt-G~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~~~  254 (391)
T PRK07309        176 ANPT-GVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAPAE  254 (391)
T ss_pred             CCCC-CcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEEeCHH
Confidence            9999 999999999999999999999999999987221       1111 112  458999999864  67788988887


Q ss_pred             ccc
Q psy5413         282 FIQ  284 (285)
Q Consensus       282 ~i~  284 (285)
                      +++
T Consensus       255 ~~~  257 (391)
T PRK07309        255 FTA  257 (391)
T ss_pred             HHH
Confidence            764

>PRK07337 aminotransferase; Validated

Probab=99.86  E-value=8.5e-21  Score=172.25  Aligned_cols=202  Identities=15%  Similarity=0.059  Sum_probs=155.2

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----CC----CcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----GK----EAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g~----~~~~~~~~Gs~a~~~al~  134 (285)
                      ++.+++|..+.+.. +.+.+.+++.+.... ...|.......++++.+++++    |.    +.+++++|+++|+..++.
T Consensus        29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~  108 (388)
T PRK07337         29 GRDIIHMGIGEPDFTAPEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACL  108 (388)
T ss_pred             CCCEEEeCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHH
Confidence            45678999887765 466888888766543 345665556888999999986    32    346889999999999998


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      +++ ++||+|++++++|.......         ...|.+++.++.+.  ++.+|++++++.+++       ++++|++++
T Consensus       109 ~l~-~~gd~Vlv~~p~y~~~~~~~---------~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~v~l~~  171 (388)
T PRK07337        109 ALV-ERGDEVLMPDPSYPCNRHFV---------AAAEGRPVLVPSGPAERFQLTAADVEAAWGE-------RTRGVLLAS  171 (388)
T ss_pred             Hhc-CCCCEEEEeCCCchhhHHHH---------HHcCCEEEEeecCCccCCcCCHHHHHhhcCc-------cceEEEEEC
Confidence            877 68999999988876543321         23477788887643  357899999999977       789999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------h-hcccCCeE-EEecccccCc--ceeEEeecCccc
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------E-VCASVDTV-MFCLSKGLGA--PVGSILAGPEEF  282 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~-~~~~~dv~-~~s~sK~l~~--p~gg~~~~~~~~  282 (285)
                      |+||| |.+++.+++++|+++|+++|+++|+||+|..+.      . .....+++ +.|+||.++.  .+.|++++++++
T Consensus       172 p~NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~~~~l  250 (388)
T PRK07337        172 PSNPT-GTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYFNMTGWRLGWLVVPEAL  250 (388)
T ss_pred             CCCCC-CcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhccCCEEEEEechhhcCCchhheeeeecCHHH
Confidence            99999 999999999999999999999999999977221      1 11233455 7899998864  678888888776


Q ss_pred             cc
Q psy5413         283 IQ  284 (285)
Q Consensus       283 i~  284 (285)
                      ++
T Consensus       251 ~~  252 (388)
T PRK07337        251 VG  252 (388)
T ss_pred             HH
Confidence            54

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.86  E-value=3.7e-21  Score=174.51  Aligned_cols=195  Identities=19%  Similarity=0.270  Sum_probs=143.5

Q ss_pred             eeccCCcCC--CcHHHHHHHHhcccC--------CCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcccc
Q psy5413          70 DIRSDTISK--PTMEMKNYMFNCEVG--------DDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDR  139 (285)
Q Consensus        70 ~~~~~~~~~--~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~  139 (285)
                      +|.+.++-+  .+|++++++.+....        ...|+....+.+||+.+++++|.+.++++++|+.|+..++.+++ +
T Consensus         2 ~f~s~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~l~-~   80 (392)
T PLN03227          2 NFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTESAILYSDGASTTSSTVAAFA-K   80 (392)
T ss_pred             CCcCcCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHhC-C
Confidence            455555444  678888887766542        22466667899999999999999999999999999999998876 6


Q ss_pred             CCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHH---Hhccccc----ccCCceEEEEEec
Q psy5413         140 RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEA---KFSTADN----IHCASTSLVCVEN  212 (285)
Q Consensus       140 ~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~---~i~~~~~----~~~~~~~~v~i~~  212 (285)
                      +||.|++++..|.++.....+.         +..++.++..     |++++++   .+.+...    ....++++|++|+
T Consensus        81 ~GD~Vl~~~~~h~s~~~~~~l~---------~~~~~~~~~~-----d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~  146 (392)
T PLN03227         81 RGDLLVVDRGVNEALLVGVSLS---------RANVRWFRHN-----DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEG  146 (392)
T ss_pred             CCCEEEEeccccHHHHHHHHHc---------CCeEEEeCCC-----CHHHHHHHHHHhhhhccccccccCCCcEEEEEcC
Confidence            9999999999987764432233         4455555542     3444444   4432100    0123689999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh-----h------h--cccCCeEEEecccccCcceeEEeec
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA-----E------V--CASVDTVMFCLSKGLGAPVGSILAG  278 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~-----~------~--~~~~dv~~~s~sK~l~~p~gg~~~~  278 (285)
                      ++|++ |.+.|   +++|+++|++||+++|+||+|+ +..     .      .  ..++|+++.|++|+++ |.||++++
T Consensus       147 v~~~~-G~i~~---l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g-~~gg~v~~  221 (392)
T PLN03227        147 LYKNT-GTLAP---LKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFG-SVGGMTVG  221 (392)
T ss_pred             CcCCC-CcccC---HHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhh-ccCcEEec
Confidence            99998 99999   9999999999999999999987 111     0      1  2356999999999876 68888888


Q ss_pred             Cccccc
Q psy5413         279 PEEFIQ  284 (285)
Q Consensus       279 ~~~~i~  284 (285)
                      ++++++
T Consensus       222 ~~~~~~  227 (392)
T PLN03227        222 SEEVVD  227 (392)
T ss_pred             CHHHHH
Confidence            877653

>PRK07481 hypothetical protein; Provisional

Probab=99.86  E-value=8.7e-21  Score=174.65  Aligned_cols=233  Identities=13%  Similarity=0.144  Sum_probs=151.3

Q ss_pred             CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC---Cc--cCC
Q psy5413          26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD---VY--LED  100 (285)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~---~y--~~~  100 (285)
                      .|..+.++.+.+.|+..++.+++....|+.                  .+.++.+|++.+|+.+++....   .+  ..+
T Consensus        24 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~------------------~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~   85 (449)
T PRK07481         24 PPIIIVRGDGVYVYDIDGKKLLDGVGGLWN------------------VNVGHNREEVKEAIVRQLDELEYYSTFDGTTH   85 (449)
T ss_pred             CCceEEeccccEEEeCCCCEEEECchhHHh------------------hcCCCCCHHHHHHHHHHHHhccceecccccCC
Confidence            356677777788887655554444443333                  2447899999999998876311   11  256


Q ss_pred             hhHHHHHHHHHhHcC---CCcEEEcCChHHHHHHHHHHcccc------CCC-eEE-ecCCcceeeecccccccccccccc
Q psy5413         101 PTCKELQEKAAKLAG---KEAAIFVPSGTMGNLIAIMTHCDR------RDS-EII-VGDCSHIMLWEQGGASQTSVYSQI  169 (285)
Q Consensus       101 ~~~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~al~~~~~~------~g~-~vi-~~~~~h~~~~~~~~~~~~~~~~~~  169 (285)
                      +...++.++|+++++   .++++|++|||+|+++|++++...      +++ +|+ ....||+.+.....+...+.+...
T Consensus        86 ~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~  165 (449)
T PRK07481         86 PRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRN  165 (449)
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccc
Confidence            778899999999873   467899999999999999998743      233 344 367889877433322211212211


Q ss_pred             -----cceeeeeeecCCC--CC-CCHHH--------HHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHH
Q psy5413         170 -----GRVLMRGVTNQKD--GT-FDLDE--------MEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR  233 (285)
Q Consensus       170 -----~g~~~~~~~~~~~--~~-~d~~~--------l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~l  233 (285)
                           .+...+..|....  +. .|+++        +++.|..   .+.+++++|++|++++..|....|.+++++|+++
T Consensus       166 ~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~---~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~l  242 (449)
T PRK07481        166 YEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAF---QGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREV  242 (449)
T ss_pred             cCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHh---cCCCcEEEEEEecccCCcCCccCCHHHHHHHHHH
Confidence                 1222222221100  11 14443        3444431   1345899999999999875556788999999999


Q ss_pred             HHHcCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecC
Q psy5413         234 CQEHNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGP  279 (285)
Q Consensus       234 a~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~  279 (285)
                      |++||+++|+||+++++     ....+..++.  +.+++|++++   |+|++++.+
T Consensus       243 c~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~  298 (449)
T PRK07481        243 CDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNA  298 (449)
T ss_pred             HHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEEeecccCCCcCceEEEEcH
Confidence            99999999999998844     2233455555  6777899986   788766653

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.86  E-value=4.3e-21  Score=178.37  Aligned_cols=216  Identities=13%  Similarity=0.074  Sum_probs=141.8

Q ss_pred             cCCeeeeecc----CCcCCCcHHHHHHHHhcccCCC----C-ccCChhHHHHHHHHHhHcC---CCcEEEcCChHHHHHH
Q psy5413          64 VNIRTVDIRS----DTISKPTMEMKNYMFNCEVGDD----V-YLEDPTCKELQEKAAKLAG---KEAAIFVPSGTMGNLI  131 (285)
Q Consensus        64 ~~~~~~~~~~----~~~~~~~~~v~~a~~~~~~~~~----~-y~~~~~~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~  131 (285)
                      .|++++||.+    .+.++.||+|.+|+.+++....    . ...++...+|+++|.+.+.   .+.++|++|||+|++.
T Consensus        87 dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~  166 (504)
T PLN02760         87 NGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDT  166 (504)
T ss_pred             CCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHH
Confidence            3677788765    4567799999999998876421    1 1245668899999988853   3457999999999999


Q ss_pred             HHHHcccc------CCC-eEE-ecCCcceeeeccccccccccccccccee---eeeeecCC-------CC------CCCH
Q psy5413         132 AIMTHCDR------RDS-EII-VGDCSHIMLWEQGGASQTSVYSQIGRVL---MRGVTNQK-------DG------TFDL  187 (285)
Q Consensus       132 al~~~~~~------~g~-~vi-~~~~~h~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~-------~~------~~d~  187 (285)
                      |++++...      +++ +|| ....||+.+.....++..+.+...++..   +..++.+.       ..      ....
T Consensus       167 AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  246 (504)
T PLN02760        167 QVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLA  246 (504)
T ss_pred             HHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHH
Confidence            99998522      232 344 3678898874432222111121111211   11222110       00      0112


Q ss_pred             HHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE--
Q psy5413         188 DEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV--  260 (285)
Q Consensus       188 ~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~--  260 (285)
                      +++++.+...   +.+++++|++|++++..|....|.+++++|+++|++||+++|+||+++++     ....+..++.  
T Consensus       247 ~~le~~l~~~---~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PD  323 (504)
T PLN02760        247 DNLENLILKE---GPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPD  323 (504)
T ss_pred             HHHHHHHHhc---CCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCc
Confidence            4567766421   23479999999999987555677899999999999999999999998733     3334445554  


Q ss_pred             EEecccccCc---ceeEEeecCcccc
Q psy5413         261 MFCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       261 ~~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                      +.+++|.+++   |+|++++ +++++
T Consensus       324 ivtlgK~lggG~~PigAv~~-~~~i~  348 (504)
T PLN02760        324 LVSLAKALSSAYMPIGAVLV-SPEIS  348 (504)
T ss_pred             EEEecccccCCccccceEee-cHHHH
Confidence            7888899976   8888555 45554

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.86  E-value=5.9e-21  Score=176.20  Aligned_cols=234  Identities=13%  Similarity=0.166  Sum_probs=153.2

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC---CC-ccCChh
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD---DV-YLEDPT  102 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~---~~-y~~~~~  102 (285)
                      |..+.++.+.+.|+..++.+++....++.                  .+.++.+|+|.+++.+++...   .. ...++.
T Consensus        30 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~------------------~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~   91 (466)
T PRK07030         30 LIPIRRGEGVWLEDFEGKRYLDAVSSWWV------------------NVFGHANPRINQRIKDQVDQLEHVILAGFSHEP   91 (466)
T ss_pred             CceEEeeeccEEEECCCCEEEEcchhHHh------------------hcCCCCCHHHHHHHHHHHHhcCCccccccCCHH
Confidence            34566677777777554444333333332                  144789999999999887631   11 124567


Q ss_pred             HHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCC-eEE-ecCCcceeeecccccccccccccccce
Q psy5413         103 CKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDS-EII-VGDCSHIMLWEQGGASQTSVYSQIGRV  172 (285)
Q Consensus       103 ~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~-~vi-~~~~~h~~~~~~~~~~~~~~~~~~~g~  172 (285)
                      ..+|.++|+++..  .+.++|++|||+|++.|++++...      +++ +|+ ....||+.+.....+.....+...++.
T Consensus        92 ~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p  171 (466)
T PRK07030         92 VIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKP  171 (466)
T ss_pred             HHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCc
Confidence            8899999999863  467899999999999999998532      233 344 367889877443322211222222221


Q ss_pred             ---eeeeeecCCCC------------CCCHHHHHHHhcccccccCCceEEEEEec-ccCCCCeeeCCHHHHHHHHHHHHH
Q psy5413         173 ---LMRGVTNQKDG------------TFDLDEMEAKFSTADNIHCASTSLVCVEN-THNYCGGTVLPMQWLRELKARCQE  236 (285)
Q Consensus       173 ---~~~~~~~~~~~------------~~d~~~l~~~i~~~~~~~~~~~~~v~i~~-~~n~~gG~~~~~~~l~~i~~la~~  236 (285)
                         .+..+|.+...            ..+++++++.+.+    +.+++++|++|+ +++..|..+.|++++++|+++|++
T Consensus       172 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~----~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~  247 (466)
T PRK07030        172 LLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAE----HHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDR  247 (466)
T ss_pred             cCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHh----CCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHH
Confidence               12222221110            1135667777764    345899999999 698876667888999999999999


Q ss_pred             cCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413         237 HNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       237 ~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                      ||+++|+||+++++     ....++.++.  +.+++|++++   |+++++. +++++
T Consensus       248 ~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~-~~ei~  303 (466)
T PRK07030        248 YGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCLSKALTGGYLPLAAVLT-TDTVY  303 (466)
T ss_pred             cCCEEEEeehhhCcCccccchHHHhcCCCCCEEeeehhccCCcccceEEEe-cHHHH
Confidence            99999999998844     2334556666  7777899987   7776655 45443

>PRK08363 alanine aminotransferase; Validated

Probab=99.86  E-value=1.2e-20  Score=171.92  Aligned_cols=200  Identities=19%  Similarity=0.122  Sum_probs=151.6

Q ss_pred             CCeeeeeccCCcC----CCcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcCC--------CcEEEcCChHHHHHH
Q psy5413          65 NIRTVDIRSDTIS----KPTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAGK--------EAAIFVPSGTMGNLI  131 (285)
Q Consensus        65 ~~~~~~~~~~~~~----~~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g~--------~~~~~~~~Gs~a~~~  131 (285)
                      |..+++|..+.+.    .+++.+.+++.+.... ...|+..+...+|++.++++++.        +.+++++|+++|+..
T Consensus        29 ~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~  108 (398)
T PRK08363         29 GIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQL  108 (398)
T ss_pred             CCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence            5678999998884    3677899998876643 34577677889999999998732        245888889999999


Q ss_pred             HHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeee-ecC-CCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413         132 AIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGV-TNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVC  209 (285)
Q Consensus       132 al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~  209 (285)
                      ++.+++ ++||.|++++++|......   .      ...|.+++.+ +.+ +.+.+|++++++++++       ++++|+
T Consensus       109 ~~~~~~-~~gd~Vl~~~p~y~~~~~~---~------~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~-------~~~~v~  171 (398)
T PRK08363        109 IFGALL-DPGDEILIPGPSYPPYTGL---V------KFYGGVPVEYRTIEEEGWQPDIDDIRKKITE-------KTKAIA  171 (398)
T ss_pred             HHHHhC-CCCCEEEEcCCCCcchHHH---H------HHcCCEEEEeccccccCCcCCHHHHHhhCCc-------ceEEEE
Confidence            999887 6999999998887654331   1      2346666666 332 3346899999999976       789999


Q ss_pred             EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---------hhhcccCCeE-EEecccccCc--ceeEEee
Q psy5413         210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---------AEVCASVDTV-MFCLSKGLGA--PVGSILA  277 (285)
Q Consensus       210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---------~~~~~~~dv~-~~s~sK~l~~--p~gg~~~  277 (285)
                      +++|+||| |.+++.+++++|+++|+++|+++|+||+|..+         ..+.....++ +.|+||+++.  .+.|+++
T Consensus       172 l~~p~NPt-G~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~  250 (398)
T PRK08363        172 VINPNNPT-GALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIY  250 (398)
T ss_pred             EECCCCCC-CcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEEEE
Confidence            99999999 99999999999999999999999999998621         1111222345 8999998654  5667776


Q ss_pred             c--Cccc
Q psy5413         278 G--PEEF  282 (285)
Q Consensus       278 ~--~~~~  282 (285)
                      .  ++++
T Consensus       251 ~~~~~~~  257 (398)
T PRK08363        251 FVDPEGK  257 (398)
T ss_pred             EeCcHHH
Confidence            5  5443

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.86  E-value=7.6e-21  Score=172.25  Aligned_cols=163  Identities=20%  Similarity=0.255  Sum_probs=134.1

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|...+||+.+++++|.+.+++++||++|+..++.+++ ++||+|+++.+.|..+.... ...      ...|.++..+
T Consensus        57 ~~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~~l~al~-~~Gd~Vi~~~~~y~~t~~~~~~~~------~~~G~~~~~v  129 (391)
T TIGR01328        57 GNPTVSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTIL-KAGDHLISDECLYGCTFALLEHAL------TKFGIQVDFI  129 (391)
T ss_pred             CCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEecCcchHHHHHHHHHH------hcCCeEEEEE
Confidence            568899999999999999999999999999999998876 69999999887665432211 111      2457777777


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~  254 (285)
                      +..     |++++++++++       ++++|++++|+||+ |.+.|   +++|+++|+++|+++|+|+++...   ..+.
T Consensus       130 d~~-----d~e~l~~~i~~-------~tklV~le~p~Np~-G~v~d---l~~I~~la~~~gi~livD~a~a~~~~~~~~~  193 (391)
T TIGR01328       130 NMA-----IPEEVKAHIKD-------NTKIVYFETPANPT-MKLID---MERVCRDAHSQGVKVIVDNTFATPMLTNPVA  193 (391)
T ss_pred             CCC-----CHHHHHHhhcc-------CCeEEEEECCCCCC-CcccC---HHHHHHHHHHcCCEEEEECCCchhccCCchh
Confidence            653     79999999977       79999999999999 89999   999999999999999999998721   2234


Q ss_pred             ccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413         255 ASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ  284 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~  284 (285)
                      .++|+++.|++|++++   .+||++++++++++
T Consensus       194 ~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~  226 (391)
T TIGR01328       194 LGVDVVVHSATKYIGGHGDVVAGLICGKAELLQ  226 (391)
T ss_pred             cCCCEEEccccccccCCCCceEEEEEcCHHHHH
Confidence            5889999999999987   45899999888764

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK07682 hypothetical protein; Validated

Probab=99.86  E-value=5.5e-21  Score=172.92  Aligned_cols=200  Identities=15%  Similarity=0.132  Sum_probs=150.9

Q ss_pred             eeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcC----C----C-cEEEcCChHHHHHHHHHH
Q psy5413          67 RTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAG----K----E-AAIFVPSGTMGNLIAIMT  135 (285)
Q Consensus        67 ~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g----~----~-~~~~~~~Gs~a~~~al~~  135 (285)
                      .+++|..+.+.. +.+.+.+++.+.... ...|...+...++++.++++++    .    + .+++++|+++|+..++++
T Consensus        21 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~  100 (378)
T PRK07682         21 GVISLGVGEPDFVTPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRA  100 (378)
T ss_pred             CeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHH
Confidence            457777766655 445677777665432 3457666778899999999874    2    2 478888999999999998


Q ss_pred             ccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         136 HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       136 ~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      ++ ++||.|++++++|.....   ..      ...|.+++.++.+.  ++.+|++++++++.+       ++++|++++|
T Consensus       101 l~-~~gd~vl~~~p~y~~~~~---~~------~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~v~~~~p  163 (378)
T PRK07682        101 II-NPGDEVLIVEPSFVSYAP---LV------TLAGGVPVPVATTLENEFKVQPAQIEAAITA-------KTKAILLCSP  163 (378)
T ss_pred             hC-CCCCEEEEeCCCchhhHH---HH------HHcCCEEEEeecCCccCCCCCHHHHHhhcCc-------ccEEEEEECC
Confidence            87 689999998887654322   11      23477777777642  457899999999976       7899999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---------hhcc--cCCeEEEecccccCc--ceeEEeecCc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---------EVCA--SVDTVMFCLSKGLGA--PVGSILAGPE  280 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~~--~~dv~~~s~sK~l~~--p~gg~~~~~~  280 (285)
                      +||| |.+++.+++++|+++|++||+++|+||+|..+.         .+..  ...+++.|+||.++.  .+.|+++.++
T Consensus       164 ~NPt-G~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~  242 (378)
T PRK07682        164 NNPT-GAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPV  242 (378)
T ss_pred             CCCc-CcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcCH
Confidence            9999 899999999999999999999999999977221         1111  223559999999874  5668888888


Q ss_pred             cccc
Q psy5413         281 EFIQ  284 (285)
Q Consensus       281 ~~i~  284 (285)
                      ++++
T Consensus       243 ~~i~  246 (378)
T PRK07682        243 YFSE  246 (378)
T ss_pred             HHHH
Confidence            7764

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.86  E-value=2.6e-21  Score=177.91  Aligned_cols=200  Identities=14%  Similarity=0.138  Sum_probs=153.4

Q ss_pred             CeeeeeccCCcCCCc-HHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCC-----CcEEEcCChHHHHHHHHHHcccc
Q psy5413          66 IRTVDIRSDTISKPT-MEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGK-----EAAIFVPSGTMGNLIAIMTHCDR  139 (285)
Q Consensus        66 ~~~~~~~~~~~~~~~-~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~-----~~~~~~~~Gs~a~~~al~~~~~~  139 (285)
                      ..+++|+.+++..+. |.+.+++.+.......|+......+|++.++++++.     +.+++++|+++++..++.+++ +
T Consensus        85 ~~~i~L~~g~p~~~~~p~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~-~  163 (431)
T PRK15481         85 TPLHDLAGGNPDPQRLPDLSRYFARLSRTPRLYGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHL-L  163 (431)
T ss_pred             chhhhhhcCCCChhHhHHHHHHHHHhhhhhhhcCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhC-C
Confidence            346788888777654 567777776544445677666678899999999752     256888888999999999887 6


Q ss_pred             CCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEe-cccCCCC
Q psy5413         140 RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVE-NTHNYCG  218 (285)
Q Consensus       140 ~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~-~~~n~~g  218 (285)
                      +||.|++++++|.....   ..      ...|.+++.++.++++ +|++++++++++       ++++++++ +|+||| 
T Consensus       164 pgd~Vlv~~P~y~~~~~---~~------~~~g~~~~~v~~~~~g-~~~~~l~~~~~~-------~~k~i~~~p~p~NPT-  225 (431)
T PRK15481        164 PGDSVAVEDPCFLSSIN---ML------RYAGFSASPVSVDAEG-MQPEKLERALAQ-------GARAVILTPRAHNPT-  225 (431)
T ss_pred             CCCEEEEeCCCcHHHHH---HH------HHcCCeEEeeccCCCC-CCHHHHHHHHhc-------CCCEEEECCCCCCCC-
Confidence            99999999888755443   22      3458899999885444 899999999976       67888887 799999 


Q ss_pred             eeeCCHHHHHHHHHHHHHc-CCeEEEeCccCChh-----h-hcccC-C-eEEEecccccCc-ceeEEeecCccccc
Q psy5413         219 GTVLPMQWLRELKARCQEH-NIPVHMDGARLPLA-----E-VCASV-D-TVMFCLSKGLGA-PVGSILAGPEEFIQ  284 (285)
Q Consensus       219 G~~~~~~~l~~i~~la~~~-gi~li~Dea~~~~~-----~-~~~~~-d-v~~~s~sK~l~~-p~gg~~~~~~~~i~  284 (285)
                      |.+++.+.+++|.++|++| +++||+||+|..+.     . +.... . +++.||||.++. .+.|+++.++++++
T Consensus       226 G~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~GlRiG~~i~~~~~~~  301 (431)
T PRK15481        226 GCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWALIRSVSKALGPDLRLAFVASDSATSA  301 (431)
T ss_pred             CccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCEEEEeeeccccCCCceeEEEeCCHHHHH
Confidence            9999999999999999999 99999999987321     1 11111 2 449999998875 67789998877654

>PRK07678 aminotransferase; Validated

Probab=99.86  E-value=7.3e-21  Score=175.26  Aligned_cols=235  Identities=14%  Similarity=0.097  Sum_probs=151.4

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC---CccCChhH
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD---VYLEDPTC  103 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~---~y~~~~~~  103 (285)
                      |..+.++.+.+.|+..++.+++.+..|+.-                  +.++.+|++.+|+.+++....   ....++..
T Consensus        30 p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~   91 (451)
T PRK07678         30 TMVVAKAEGAWVTDIQGNRYLDGMSGLWCV------------------NVGYGRKELAEAAYEQLKTLSYFPLTQSHEPA   91 (451)
T ss_pred             CeeEEeeeeeEEEeCCCCEEEEccccHHhh------------------cCCCCCHHHHHHHHHHHHhcCccccccCCHHH
Confidence            566677777777776555544444443332                  347899999999998876321   11245668


Q ss_pred             HHHHHHHHhHcCC-CcEEEcCChHHHHHHHHHHccccC------CC-eEEe-cCCcceeeecccccccccccccccc---
Q psy5413         104 KELQEKAAKLAGK-EAAIFVPSGTMGNLIAIMTHCDRR------DS-EIIV-GDCSHIMLWEQGGASQTSVYSQIGR---  171 (285)
Q Consensus       104 ~~l~~~la~~~g~-~~~~~~~~Gs~a~~~al~~~~~~~------g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g---  171 (285)
                      .+|.++|+++++. +.++|++|||+|++.|++++....      ++ +|+. ...||+.+..+..+.....+...++   
T Consensus        92 ~~lae~l~~~~~~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~  171 (451)
T PRK07678         92 IKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLA  171 (451)
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCC
Confidence            8999999998754 367999999999999999986432      33 3443 5788987754333221111111111   


Q ss_pred             eeeeeeecCCCCC---------CC---HHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCC
Q psy5413         172 VLMRGVTNQKDGT---------FD---LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNI  239 (285)
Q Consensus       172 ~~~~~~~~~~~~~---------~d---~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi  239 (285)
                      ..+..++.+....         .|   ++.+++.|+..   +.+++++|++|++++..|..+.|.+++++++++|++||+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~  248 (451)
T PRK07678        172 PGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWE---LSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGA  248 (451)
T ss_pred             CCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhc---CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCC
Confidence            1112222211110         12   23356666421   345899999999998875566788999999999999999


Q ss_pred             eEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413         240 PVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       240 ~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                      ++|+||+++++     ....+.+++.  +.+++|++++   |+++++.. ++++
T Consensus       249 llI~DEV~tGfGRtG~~~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~-~~i~  301 (451)
T PRK07678        249 LLISDEVICGFGRTGKAFGFMNYGVKPDIITMAKGITSAYLPLSATAVK-KEIY  301 (451)
T ss_pred             EEEEeehhhcCCcCchhHHHHhcCCCCCEEEeecccccCCcceeEEEEc-HHHH
Confidence            99999998744     2223445555  6677899986   77776654 4443

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.86  E-value=5.1e-21  Score=170.35  Aligned_cols=197  Identities=19%  Similarity=0.188  Sum_probs=157.1

Q ss_pred             eeeeec-cCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcC-CC--cEEEcCChHHHHHHHHHHccccCCC
Q psy5413          67 RTVDIR-SDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAG-KE--AAIFVPSGTMGNLIAIMTHCDRRDS  142 (285)
Q Consensus        67 ~~~~~~-~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g-~~--~~~~~~~Gs~a~~~al~~~~~~~g~  142 (285)
                      .+++|+ |+|+.+++|.+.+++.+.......|. ++...++++.++++.| .+  .++..+|..+.+...+++++ .+||
T Consensus        23 ~~i~LssNenP~gp~~~~~~~~~~~~~~~~rYP-d~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~-~~gd  100 (356)
T COG0079          23 GIIKLSSNENPYGPPPKVIEAIRAALDKLNRYP-DPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFV-EPGD  100 (356)
T ss_pred             cceeecCCCCCCCCCHHHHHHHHHHHHhhccCC-CCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhh-cCCC
Confidence            467776 68888888999999987766556666 4568999999999998 54  34556666777788888877 6899


Q ss_pred             eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413         143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL  222 (285)
Q Consensus       143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~  222 (285)
                      .|++..+++.......         +..|.+++.++..+ +.+|++.+.+++.+       ++++|++++||||| |..+
T Consensus       101 ~vl~~~Ptf~~Y~~~a---------~~~g~~~~~v~~~~-~~~d~~~~~~~~~~-------~~~lv~i~nPNNPT-G~~~  162 (356)
T COG0079         101 TVLIPEPTFSMYEIAA---------QLAGAEVVKVPLKE-FRLDLDAILAAIRD-------KTKLVFLCNPNNPT-GTLL  162 (356)
T ss_pred             EEEEcCCChHHHHHHH---------HhcCCeEEEecccc-cccCHHHHHHhhhc-------CCCEEEEeCCCCCC-CCCC
Confidence            9999888876554322         34599999999876 88999999999987       78999999999999 9999


Q ss_pred             CHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCC-e-EEEecccccCc--ceeEEeecCccccc
Q psy5413         223 PMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVD-T-VMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       223 ~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~d-v-~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      +.++|+++.+.+.+ +.+|++||||..+.     .+....+ + ++.||||.+|.  .+.|++++++++++
T Consensus       163 ~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~  232 (356)
T COG0079         163 PREELRALLEALPE-GGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPELIA  232 (356)
T ss_pred             CHHHHHHHHHhCCC-CcEEEEeCchhhcCCchhhhhccCCCCEEEEEecHHhhhcchhceeeccCCHHHHH
Confidence            99999999998888 99999999988222     2222344 4 49999997655  78899999998875

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.86  E-value=1.2e-20  Score=172.11  Aligned_cols=205  Identities=14%  Similarity=0.109  Sum_probs=151.2

Q ss_pred             CCeeeeeccCCcCCCc-HHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc----CC----C-cEEEcCChHHHHHHH
Q psy5413          65 NIRTVDIRSDTISKPT-MEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA----GK----E-AAIFVPSGTMGNLIA  132 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~~-~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~----g~----~-~~~~~~~Gs~a~~~a  132 (285)
                      +..+++|..+++.... +.+.+++.+....  ...|....+..+|++.+++++    |.    + .+++++|+++|+..+
T Consensus        32 ~~~~~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~  111 (403)
T PRK08636         32 GEDIIDFSMGNPDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHL  111 (403)
T ss_pred             CCCEEEcCCcCCCCCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHH
Confidence            4567899888877653 3566666554332  356776667888999998885    42    3 468889899999999


Q ss_pred             HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHH----HHHhcccccccCCceE
Q psy5413         133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEM----EAKFSTADNIHCASTS  206 (285)
Q Consensus       133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l----~~~i~~~~~~~~~~~~  206 (285)
                      +.+++ .+||.|++++++|.......         ...|.+++.++.+  +++.+|++.+    ++++++    +..+++
T Consensus       112 ~~~l~-~~gd~Vlv~~P~y~~~~~~~---------~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~----~~~~~~  177 (403)
T PRK08636        112 VQAIT-NPGDVAIVPDPAYPIHSQAF---------ILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRE----SSPKPK  177 (403)
T ss_pred             HHHhC-CCCCEEEEcCCCCcchHHHH---------HhcCCEEEEEeccccccCccChhhhhhHHHHHHhh----ccCCce
Confidence            99987 68999999998876544322         3448888888763  3356887755    555543    334789


Q ss_pred             EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcccCCe--EEEecccccCc--ce
Q psy5413         207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVCASVDT--VMFCLSKGLGA--PV  272 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~~~dv--~~~s~sK~l~~--p~  272 (285)
                      +|++++|+||| |.+++.+++++|+++|++|++++|+||+|..+.          .+....+.  .+.|+||.++.  .+
T Consensus       178 ~i~~~~P~NPT-G~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR  256 (403)
T PRK08636        178 YVVVNFPHNPT-TATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWR  256 (403)
T ss_pred             EEEEeCCCCCC-CccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccce
Confidence            99999999999 999999999999999999999999999987221          11112233  37899999853  78


Q ss_pred             eEEeecCccccc
Q psy5413         273 GSILAGPEEFIQ  284 (285)
Q Consensus       273 gg~~~~~~~~i~  284 (285)
                      .|++++++++++
T Consensus       257 iG~iv~~~~li~  268 (403)
T PRK08636        257 VGFVVGNKKLVG  268 (403)
T ss_pred             eeeeeCCHHHHH
Confidence            889998887764

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.86  E-value=6.7e-21  Score=173.90  Aligned_cols=198  Identities=19%  Similarity=0.195  Sum_probs=148.1

Q ss_pred             CCeeeeeccCCcCC--CcHHHHHHHHhcccC--C------CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK--PTMEMKNYMFNCEVG--D------DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~--~------~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~  134 (285)
                      ++++++|.++++-+  .+|+|++++.++...  .      ..++..+...+|++.+++++|.+.+++++||++|++.+++
T Consensus        44 ~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~SG~~An~~ai~  123 (406)
T PRK13393         44 PREVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEAALLFTSGYVSNWAALS  123 (406)
T ss_pred             CccEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHH
Confidence            46789998876666  699999999887652  1      1223455789999999999999999999999999999999


Q ss_pred             Hccc-cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         135 THCD-RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       135 ~~~~-~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      ++.. .+|+.|++.+.+|.++......         .+.+++.++.     .|++++++.++..   ...++++|+++++
T Consensus       124 ~l~~~~~g~~I~~~~~~H~s~~~~~~~---------~g~~~~~~~~-----~d~~~l~~~l~~~---~~~~~~~v~~~~v  186 (406)
T PRK13393        124 TLGSRLPGCVILSDELNHASMIEGIRH---------SRAEKRIFRH-----NDPADLERKLSDL---DPHRPKLVAFESV  186 (406)
T ss_pred             HhhcCCCCCEEEEccchhHHHHHHHHH---------cCCeEEEeCC-----CCHHHHHHHHHhc---cCCCCEEEEEcCC
Confidence            6542 2677777778888766432222         2555555553     3788888877541   1126789999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhh-----------hcccCCeEEEecccccCcceeEEeecCcc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAE-----------VCASVDTVMFCLSKGLGAPVGSILAGPEE  281 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~-----------~~~~~dv~~~s~sK~l~~p~gg~~~~~~~  281 (285)
                      +|++ |.+.|   +++|.++|++||+++|+||+|+ ++..           .....|+++.+++|++++ .||+++++++
T Consensus       187 ~~~~-G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~-~GG~~~~~~~  261 (406)
T PRK13393        187 YSMD-GDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGV-MGGYITGSAA  261 (406)
T ss_pred             CCCC-CchhC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcc-cCceeeCCHH
Confidence            9999 99999   9999999999999999999987 2210           112346778899999997 5788888776


Q ss_pred             ccc
Q psy5413         282 FIQ  284 (285)
Q Consensus       282 ~i~  284 (285)
                      +++
T Consensus       262 ~~~  264 (406)
T PRK13393        262 LCD  264 (406)
T ss_pred             HHH
Confidence            543

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.86  E-value=1.2e-20  Score=171.01  Aligned_cols=200  Identities=14%  Similarity=0.119  Sum_probs=149.3

Q ss_pred             eeeeeccCCcCC-CcHHHHHHHHhccc-CCCCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHHHHHHHHc
Q psy5413          67 RTVDIRSDTISK-PTMEMKNYMFNCEV-GDDVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        67 ~~~~~~~~~~~~-~~~~v~~a~~~~~~-~~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~~~al~~~  136 (285)
                      .+++|..+.+.. +.+.+.+++.+... ....|....+..+|++.++++++        .+.+++++|+++|+..++.++
T Consensus        30 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~  109 (384)
T PRK06348         30 DIIDLSLGDPDLITDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSI  109 (384)
T ss_pred             CcEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHh
Confidence            458888777665 34567665544332 34567766667889999998862        234689999999999999998


Q ss_pred             cccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         137 CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       137 ~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      + .+|++|++++++|........         ..|.+++.++..  +++.+|++++++++++       ++++|++++|+
T Consensus       110 ~-~~gd~vlv~~p~y~~~~~~~~---------~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~v~l~~p~  172 (384)
T PRK06348        110 L-DPGDEVIIHEPYFTPYKDQIE---------MVGGKPIILETYEEDGFQINVKKLEALITS-------KTKAIILNSPN  172 (384)
T ss_pred             c-CCCCEEEEeCCCCcchHHHHH---------HcCCEEEEecCCcCcCCcCCHHHHHHhhCc-------CccEEEEeCCC
Confidence            7 689999999888754433222         337777777753  2445899999999876       78999999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---------hhcc-cCC-eEEEecccccC--cceeEEeecCcc
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---------EVCA-SVD-TVMFCLSKGLG--APVGSILAGPEE  281 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~~-~~d-v~~~s~sK~l~--~p~gg~~~~~~~  281 (285)
                      ||| |.+++.+++++|+++|++||+++|+||+|..+.         .+.. .-. +++.|+||.++  |.+.|+++++++
T Consensus       173 NPt-G~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~  251 (384)
T PRK06348        173 NPT-GAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDY  251 (384)
T ss_pred             CCC-CcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeeecCHH
Confidence            999 999999999999999999999999999987221         1111 112 44899999887  377888888877


Q ss_pred             ccc
Q psy5413         282 FIQ  284 (285)
Q Consensus       282 ~i~  284 (285)
                      +++
T Consensus       252 ~~~  254 (384)
T PRK06348        252 IIE  254 (384)
T ss_pred             HHH
Confidence            654

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.86  E-value=1.4e-20  Score=170.36  Aligned_cols=200  Identities=18%  Similarity=0.150  Sum_probs=152.3

Q ss_pred             eeeeeccCCcCCC-cHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----C----CCcEEEcCChHHHHHHHHHHc
Q psy5413          67 RTVDIRSDTISKP-TMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----G----KEAAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        67 ~~~~~~~~~~~~~-~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g----~~~~~~~~~Gs~a~~~al~~~  136 (285)
                      .+++|..+.+..+ .+.+.+++.+.... ...|.......++++.+++++    |    .+.+++++|+++++..++.++
T Consensus        25 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l  104 (382)
T PRK06108         25 GVLPLWFGESDLPTPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQAL  104 (382)
T ss_pred             CeEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHh
Confidence            5688887776664 66899998876553 235776667788888888875    4    245688899999999999987


Q ss_pred             cccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC---CCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         137 CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK---DGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       137 ~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      + ++|+.|++++++|.....   ..      ...|.+++.++.+.   ++.+|++++++.+++       ++++|++++|
T Consensus       105 ~-~~gd~vl~~~p~y~~~~~---~~------~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~-------~~~~i~l~~p  167 (382)
T PRK06108        105 V-GPGDEVVAVTPLWPNLVA---AP------KILGARVVCVPLDFGGGGWTLDLDRLLAAITP-------RTRALFINSP  167 (382)
T ss_pred             c-CCCCEEEEeCCCccchHH---HH------HHCCCEEEEeeCCCCCCCccCCHHHHHHhcCc-------cceEEEEECC
Confidence            7 589999998887754432   22      34588888888743   245899999999876       7899999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----------hhcc-c-CCeEEEecccccCc--ceeEEeec
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----------EVCA-S-VDTVMFCLSKGLGA--PVGSILAG  278 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----------~~~~-~-~dv~~~s~sK~l~~--p~gg~~~~  278 (285)
                      +||| |.+++.+++++|+++|+++|+++|+||+|..+.           .+.. . ..+++.|+||.++.  .+.|++++
T Consensus       168 ~NPt-G~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~  246 (382)
T PRK06108        168 NNPT-GWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVA  246 (382)
T ss_pred             CCCC-CcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeC
Confidence            9999 899999999999999999999999999977321           1111 1 12458999998764  56688888


Q ss_pred             Cccccc
Q psy5413         279 PEEFIQ  284 (285)
Q Consensus       279 ~~~~i~  284 (285)
                      ++++++
T Consensus       247 ~~~~~~  252 (382)
T PRK06108        247 PPALGQ  252 (382)
T ss_pred             CHHHHH
Confidence            877664

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.86  E-value=7.4e-21  Score=174.88  Aligned_cols=232  Identities=17%  Similarity=0.197  Sum_probs=151.6

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccC----CcCCCcHHHHHHHHhcccCC--C--Ccc
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSD----TISKPTMEMKNYMFNCEVGD--D--VYL   98 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~--~--~y~   98 (285)
                      |..+.++.+.+.|+..                      |++++||.++    +.++.+|+|.+++.+++...  .  ...
T Consensus        26 ~~~~~~~~G~~l~d~d----------------------G~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~   83 (433)
T PRK08117         26 NLPVVKGEGCYYYGVD----------------------GKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVI   83 (433)
T ss_pred             CceEEeeeeeEEEeCC----------------------CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccccc
Confidence            3566677777777654                      4555665544    34679999999999887531  1  112


Q ss_pred             CChhHHHHHHHHHhHc--CCCcEEEcCChHHHHHHHHHHccccCCCe-EE-ecCCcceeeeccccccc-ccccccc----
Q psy5413          99 EDPTCKELQEKAAKLA--GKEAAIFVPSGTMGNLIAIMTHCDRRDSE-II-VGDCSHIMLWEQGGASQ-TSVYSQI----  169 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~--g~~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi-~~~~~h~~~~~~~~~~~-~~~~~~~----  169 (285)
                      .++...+|+++|++++  +.+.++|++|||+|++.|++++....|+. |+ +...||+.+.....+.. ...+...    
T Consensus        84 ~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~  163 (433)
T PRK08117         84 YYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPL  163 (433)
T ss_pred             CCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCC
Confidence            4677899999999997  34567899999999999999987555543 43 36788987754322221 0111111    


Q ss_pred             -cceeeeeeecCCC---C-------CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC
Q psy5413         170 -GRVLMRGVTNQKD---G-------TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN  238 (285)
Q Consensus       170 -~g~~~~~~~~~~~---~-------~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g  238 (285)
                       .+...++.|....   .       ..|++++++.++...  +.+++++|++|++++..|....+.+++++|+++|++||
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g  241 (433)
T PRK08117        164 LGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQV--TPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHG  241 (433)
T ss_pred             CCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhcc--CCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcC
Confidence             1222222221000   0       025667777765310  12379999999999988555678999999999999999


Q ss_pred             CeEEEeCccCChh-----hhcccCCeE--EEecccccCc--ceeEEeecCcccc
Q psy5413         239 IPVHMDGARLPLA-----EVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFI  283 (285)
Q Consensus       239 i~li~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i  283 (285)
                      +++|+||+|+++.     ...+..++.  +.+++|++++  |+|+++ ++++++
T Consensus       242 ~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg~G~pigav~-~~~~i~  294 (433)
T PRK08117        242 ILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIASGLPLSAVV-ASKELM  294 (433)
T ss_pred             CEEEEecchhccCccccchhHhhcCCCCCEeehhhhccCCCcceeEE-EcHHHH
Confidence            9999999988431     112333443  6899999987  677554 555554

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.86  E-value=9.9e-21  Score=172.17  Aligned_cols=163  Identities=21%  Similarity=0.192  Sum_probs=132.7

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccc-cccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGG-ASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|...+|++.++++.|.+.++.++||++|+..++..++ ++||+|+++.+.|..+..... ..      ...|.++..+
T Consensus        63 ~~p~~~~le~~lA~l~g~~~~i~~~sG~~Al~~~l~~ll-~~Gd~Viv~~~~y~~t~~~~~~~~------~~~G~~v~~v  135 (403)
T PRK07503         63 SNPTLALLEQRMASLEGGEAAVALASGMGAITATLWTLL-RPGDEVIVDQTLYGCTFAFLHHGL------GEFGVTVRHV  135 (403)
T ss_pred             CCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHc-CCCCEEEEccCccchHHHHHHHHH------hhCCEEEEEe
Confidence            567899999999999999889999999999999998876 699999998776644322110 11      2458887777


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~  254 (285)
                      +..     |++++++++++       ++++|++++|+||+ |.+.|   +++|+++|+++|+++|+|++|...   ..+.
T Consensus       136 d~~-----d~~~l~~~i~~-------~tklV~le~p~NPt-G~~~d---i~~I~~la~~~gi~lIvD~a~a~~~~~~~l~  199 (403)
T PRK07503        136 DLT-----DPAALKAAISD-------KTRMVYFETPANPN-MRLVD---IAAVAEIAHGAGAKVVVDNTYCTPYLQRPLE  199 (403)
T ss_pred             CCC-----CHHHHHHhcCc-------cCcEEEEeCCCCCC-CeeeC---HHHHHHHHHHcCCEEEEECCCcccccCCchh
Confidence            652     78999999987       78999999999999 89999   999999999999999999998722   1223


Q ss_pred             ccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413         255 ASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ  284 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~  284 (285)
                      .++|+++.|++|++++   .+||++++++++++
T Consensus       200 ~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~  232 (403)
T PRK07503        200 LGADLVVHSATKYLGGHGDITAGLVVGGKALAD  232 (403)
T ss_pred             hCCCEEEccccccccCCCceeEEEEEcCHHHHH
Confidence            4789999999999997   45888888877654

>PRK07480 putative aminotransferase; Validated

Probab=99.86  E-value=1e-20  Score=174.30  Aligned_cols=234  Identities=15%  Similarity=0.149  Sum_probs=149.9

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC----CCc-cCCh
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD----DVY-LEDP  101 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~----~~y-~~~~  101 (285)
                      |..+.++.+.+.|+..++.+++....|+.                  .+.++.+|++.+++.+++...    ..+ ..++
T Consensus        33 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~------------------~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~   94 (456)
T PRK07480         33 SRVITRAEGVYLWDSEGNKILDGMAGLWC------------------VNVGYGRKELADAAARQMRELPYYNTFFKTTHP   94 (456)
T ss_pred             CceEEeceeeEEEeCCCCEEEEccchHHH------------------hcCCCCCHHHHHHHHHHHHhcCCcccccccCCH
Confidence            45566666777776544444333333222                  245779999999999887632    111 2467


Q ss_pred             hHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCCe-EEe-cCCcceeeecccccccccccccccc
Q psy5413         102 TCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDSE-IIV-GDCSHIMLWEQGGASQTSVYSQIGR  171 (285)
Q Consensus       102 ~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~~-vi~-~~~~h~~~~~~~~~~~~~~~~~~~g  171 (285)
                      ...+|.++|++.++  .++++|++|||+|++.|++++...      +++. |+. ...||+.+.....+.....+...++
T Consensus        95 ~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~  174 (456)
T PRK07480         95 PAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGD  174 (456)
T ss_pred             HHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccC
Confidence            78899999999874  467899999999999999998643      3343 443 5778987643222221111211112


Q ss_pred             e---eeeeeecCCCC----CCC--------HHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH
Q psy5413         172 V---LMRGVTNQKDG----TFD--------LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE  236 (285)
Q Consensus       172 ~---~~~~~~~~~~~----~~d--------~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~  236 (285)
                      .   .+..++.+...    ..+        ++++++.+.+.   +.+++++|++|++++..|..+.|.+++++|+++|++
T Consensus       175 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~  251 (456)
T PRK07480        175 LPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILEL---GADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRK  251 (456)
T ss_pred             CCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhc---CCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence            1   11122211100    001        35666555321   334899999999999875556788999999999999


Q ss_pred             cCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecCccc
Q psy5413         237 HNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPEEF  282 (285)
Q Consensus       237 ~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~  282 (285)
                      ||+++|+||+++++     ....+..++.  +.+++|.+++   |+|+++.+ +++
T Consensus       252 ~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~-~~i  306 (456)
T PRK07480        252 YDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVG-DRV  306 (456)
T ss_pred             cCCEEEEechhhCCCcCcchhhhhhcCCCCCeeeeehhhccCCccceEEEEc-HHH
Confidence            99999999998743     2233445554  6777899986   78887765 444

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.86  E-value=1.5e-20  Score=171.50  Aligned_cols=235  Identities=16%  Similarity=0.174  Sum_probs=154.8

Q ss_pred             CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC-CC---CccCCh
Q psy5413          26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG-DD---VYLEDP  101 (285)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~-~~---~y~~~~  101 (285)
                      .|..+.++.+.+.|+..++.+++.+..++.-                  +.++.||+|.+++.+++.. ..   ....++
T Consensus        17 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~   78 (412)
T TIGR02407        17 FPTVFEKAKGSTLWDEDGKEYIDFFAGAGAL------------------NYGHNNPKLKQALIDYLADDGIIHSLDMATE   78 (412)
T ss_pred             CCceEEecccCEEEeCCCCEEEEcccchhhc------------------cCCCCCHHHHHHHHHHHhhccceeccccCcH
Confidence            4677788889999987666665555554432                  3378999999999988763 11   112356


Q ss_pred             hHHHHHHHHHhHc--C--CC-cEEE-cCChHHHHHHHHHHccccCCCe-EEe-cCCcceeeecccccccccccccccce-
Q psy5413         102 TCKELQEKAAKLA--G--KE-AAIF-VPSGTMGNLIAIMTHCDRRDSE-IIV-GDCSHIMLWEQGGASQTSVYSQIGRV-  172 (285)
Q Consensus       102 ~~~~l~~~la~~~--g--~~-~~~~-~~~Gs~a~~~al~~~~~~~g~~-vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~-  172 (285)
                      ...+|.++|++..  +  .. .++| ++|||+|++.|++++...+|+. |+. ...||+.+..+..+...+.+...++. 
T Consensus        79 ~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~  158 (412)
T TIGR02407        79 AKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVP  158 (412)
T ss_pred             HHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCC
Confidence            6788888888874  2  22 3545 5999999999999998666654 443 57889887543332211222222221 


Q ss_pred             --eeeeeecCCCC---CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCcc
Q psy5413         173 --LMRGVTNQKDG---TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGAR  247 (285)
Q Consensus       173 --~~~~~~~~~~~---~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~  247 (285)
                        .+..+|.+...   ..+++.+++.++++.. ..+++++|++|+.++.+|..+.|.+++++|+++|++||+++|+||++
T Consensus       159 ~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~  237 (412)
T TIGR02407       159 LSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSS-GVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQ  237 (412)
T ss_pred             CCCeEECCCCCccccchhHHHHHHHHHHhccC-CCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh
Confidence              23334432111   1357788888864211 11378999999999988555789999999999999999999999998


Q ss_pred             CCh-----hhhcccCCeE--EEecccccCc---ceeEEeecC
Q psy5413         248 LPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGP  279 (285)
Q Consensus       248 ~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~  279 (285)
                      +++     ....+..++.  +.+++|++++   |+|++++.+
T Consensus       238 tG~GRtG~~~a~~~~~v~PDi~~~~K~lg~~G~pigav~~~~  279 (412)
T TIGR02407       238 AGCGRTGTFFSFEPAGIEPDIVCLSKSISGYGLPLALTLIKP  279 (412)
T ss_pred             hCCCccchhHHhcccCCCCCEEEechhccCCccceeEEEEch
Confidence            743     2222333333  5567899975   677666543

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.86  E-value=2e-20  Score=171.51  Aligned_cols=234  Identities=16%  Similarity=0.145  Sum_probs=154.3

Q ss_pred             CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC----CCCccCCh
Q psy5413          26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG----DDVYLEDP  101 (285)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~----~~~y~~~~  101 (285)
                      .|..+.++.+.+.|+..++.+++.++.++.-                  +.++.||++.+++.+++..    +..+..++
T Consensus        21 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~   82 (425)
T PRK09264         21 FPVVFDKAKGSWLYDEDGKEYIDFFAGAGAL------------------NYGHNNPVLKQALIDYLQRDGITHGLDMHTT   82 (425)
T ss_pred             CCccEEeeecCEEEeCCCCEeeecccchhhc------------------cCCCCCHHHHHHHHHHHHhcccccccccCcH
Confidence            3667778888999987766666655555442                  3378999999999987763    11222356


Q ss_pred             hHHHHHHHHHhHc----CCC-cEEE-cCChHHHHHHHHHHccccCCCe-EEe-cCCcceeeecccccccccccccccce-
Q psy5413         102 TCKELQEKAAKLA----GKE-AAIF-VPSGTMGNLIAIMTHCDRRDSE-IIV-GDCSHIMLWEQGGASQTSVYSQIGRV-  172 (285)
Q Consensus       102 ~~~~l~~~la~~~----g~~-~~~~-~~~Gs~a~~~al~~~~~~~g~~-vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~-  172 (285)
                      ...+|.+++++.+    +.+ .++| ++|||+|++.|++++...+|+. |+. ...||+.+.....+...+.+...++. 
T Consensus        83 ~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~  162 (425)
T PRK09264         83 AKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVP  162 (425)
T ss_pred             HHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCC
Confidence            6788889988864    233 3545 5899999999999998666654 333 57889887543322211122222221 


Q ss_pred             --eeeeeecCCCC---CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCcc
Q psy5413         173 --LMRGVTNQKDG---TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGAR  247 (285)
Q Consensus       173 --~~~~~~~~~~~---~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~  247 (285)
                        .+..+|.+...   ..|++++++.+++.. ...+++++|++|++++..|..+.|.++|++|+++|++||+++|+||++
T Consensus       163 ~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~  241 (425)
T PRK09264        163 LNNVTRMPYDGYFGGDVDTLAYLEKLLEDSS-SGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQ  241 (425)
T ss_pred             CCCeEEeCCCCccccchhHHHHHHHHHHhcc-CCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechh
Confidence              23334432110   137788888886521 112368999999999987445778999999999999999999999998


Q ss_pred             CCh-----hhhcccCCeE--EEecccccCc---ceeEEeec
Q psy5413         248 LPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAG  278 (285)
Q Consensus       248 ~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~  278 (285)
                      +++     ....+..++.  +.+++|.+++   |+|++++.
T Consensus       242 tG~GrtG~~~~~~~~~v~PDi~t~~K~l~~~G~pigav~~~  282 (425)
T PRK09264        242 AGCGRTGTFFSFERAGITPDIVTLSKSISGYGLPMALVLIK  282 (425)
T ss_pred             hCCccccHHHHHhhcCCCCCEEEeccccCCCccceEEEEEc
Confidence            743     2222323222  4567899875   66766654

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.86  E-value=2e-20  Score=169.18  Aligned_cols=206  Identities=14%  Similarity=0.126  Sum_probs=139.8

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCC-C--CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcc
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD-D--VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~-~--~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~  137 (285)
                      |++++||.++    +.++.+|++.+++.+++... .  .....+...++++.+++..+.+.++|++||++|++.|++++.
T Consensus        28 G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~sG~~a~~~A~~~a~  107 (377)
T PRK02936         28 GKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHVSNLFTNSLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLAR  107 (377)
T ss_pred             CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhcCCCCEEEEeCCcHHHHHHHHHHHH
Confidence            5677888766    46779999999999887531 1  112345567777777777666778999999999999999865


Q ss_pred             ccCCC-eEEe-cCCcceeeecccccccccccccccc---eeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         138 DRRDS-EIIV-GDCSHIMLWEQGGASQTSVYSQIGR---VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       138 ~~~g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      ..+|+ +|++ ...+|+.+...........+...++   ..+..++.     .|++++++.+.+       ++++|++|+
T Consensus       108 ~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~-------~~~~ii~e~  175 (377)
T PRK02936        108 KHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPF-----NDIKALKEVMNE-------EVAAVMLEV  175 (377)
T ss_pred             HhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCC-----CCHHHHHHhccC-------CeEEEEEec
Confidence            44554 3554 5678877654333321001100011   01112222     278999999976       789999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----hcc----cCCeEEEecccccCc-ceeEEeecCccc
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE-----VCA----SVDTVMFCLSKGLGA-PVGSILAGPEEF  282 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----~~~----~~dv~~~s~sK~l~~-p~gg~~~~~~~~  282 (285)
                      +++++|....+++++++|+++|++||+++|+||+|+++..     ...    ..|  +.++||.+++ ..+|++++++++
T Consensus       176 i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~d--i~t~sK~l~~G~~ig~v~~~~~~  253 (377)
T PRK02936        176 VQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPD--IVTVAKGLGNGIPVGAMIGKKEL  253 (377)
T ss_pred             ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCc--EEEEcccccCCCccEEEEEcHHH
Confidence            9998744557889999999999999999999999874311     111    224  4578999987 334566677766


Q ss_pred             cc
Q psy5413         283 IQ  284 (285)
Q Consensus       283 i~  284 (285)
                      ++
T Consensus       254 ~~  255 (377)
T PRK02936        254 GT  255 (377)
T ss_pred             Hh
Confidence            54

>PRK06541 hypothetical protein; Provisional

Probab=99.86  E-value=1.5e-20  Score=173.29  Aligned_cols=232  Identities=15%  Similarity=0.145  Sum_probs=149.4

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC---CCc-cCChh
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD---DVY-LEDPT  102 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~---~~y-~~~~~  102 (285)
                      |..+.++.+.+.|+..++.+++....|+.                  .+.++.+|++.+|+.+++...   ..+ ..++.
T Consensus        35 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~------------------~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~   96 (460)
T PRK06541         35 VPVIVRGEGCYIWDDRGKRYLDGLAGLFV------------------VQVGHGRAELAEAAAKQAGTLAFFPLWSYAHPP   96 (460)
T ss_pred             CceEEeCcccEEEeCCCCEEEECCccHHh------------------ccCCCCCHHHHHHHHHHHhhCcCccccccCCHH
Confidence            45566677777777554444444333332                  245789999999999887632   111 24566


Q ss_pred             HHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc---C---CC-eEEe-cCCcceeeecccccccccccccccce
Q psy5413         103 CKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR---R---DS-EIIV-GDCSHIMLWEQGGASQTSVYSQIGRV  172 (285)
Q Consensus       103 ~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~---~---g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~  172 (285)
                      ..++.++|++...  .++++|++|||+|++.|++++...   .   ++ +|+. ...||+.+.....+...+.+...++.
T Consensus        97 ~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~  176 (460)
T PRK06541         97 AIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEP  176 (460)
T ss_pred             HHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCC
Confidence            8889999999864  467899999999999999998743   2   22 3443 67889887543333211111111111


Q ss_pred             ---eeeeeecCCC-----CCCC--------HHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH
Q psy5413         173 ---LMRGVTNQKD-----GTFD--------LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE  236 (285)
Q Consensus       173 ---~~~~~~~~~~-----~~~d--------~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~  236 (285)
                         .+..+|.+..     +..+        ++.+++.++..   +.+++++|++|++++.+|....|.+++++|+++|++
T Consensus       177 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~  253 (460)
T PRK06541        177 LVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFE---GPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDR  253 (460)
T ss_pred             CCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhc---CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHH
Confidence               1222222110     1112        36677777531   234799999999999984455669999999999999


Q ss_pred             cCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecC
Q psy5413         237 HNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGP  279 (285)
Q Consensus       237 ~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~  279 (285)
                      ||+++|+||+++++     ....++.++.  +.+++|++++   |+|+++..+
T Consensus       254 ~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~  306 (460)
T PRK06541        254 YDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITCAKGITSGYSPLGAMIASD  306 (460)
T ss_pred             cCCEEEEechhhCCCcCchhhhhhhcCCCCCEEEecccccCCccceeEEEEcH
Confidence            99999999998733     2223333333  5568899986   788877654

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.86  E-value=7.5e-21  Score=171.47  Aligned_cols=180  Identities=16%  Similarity=0.110  Sum_probs=137.0

Q ss_pred             HHHHHHHHhcccCCCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc
Q psy5413          81 MEMKNYMFNCEVGDDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG  158 (285)
Q Consensus        81 ~~v~~a~~~~~~~~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~  158 (285)
                      +++.++..+...+...|+  .+|...+||+.++++.+.+.+++++||++|+..++.+++ ++||+|++.++.|..+....
T Consensus        39 ~~~~~~~~~~~~~~~~Y~r~~npt~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all-~~GD~Vvv~~~~Y~~t~~l~  117 (394)
T PRK09028         39 AEMRHAAKNRANGEMFYGRRGTPTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFL-KAGDHLLMVDSCYEPTRDLC  117 (394)
T ss_pred             HHHHHHhccCccCCceecCCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEECCCcHHHHHHH
Confidence            355555443222223454  367788999999999998889999999999999998876 69999999877664443211


Q ss_pred             -ccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc
Q psy5413         159 -GASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH  237 (285)
Q Consensus       159 -~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~  237 (285)
                       ...      ...|+++..++..     +.+.+++++++       +|++|++++|+||+ |.+.+   +++|+++||++
T Consensus       118 ~~~l------~~~Gi~v~~v~~~-----~~e~l~~~l~~-------~TklV~lespsNPt-g~v~d---l~~I~~la~~~  175 (394)
T PRK09028        118 DKIL------KGFGIETTYYDPM-----IGEGIRELIRP-------NTKVLFLESPGSIT-MEVQD---VPTLSRIAHEH  175 (394)
T ss_pred             HHhh------hhcceEEEEECCC-----CHHHHHHhcCc-------CceEEEEECCCCCC-CcHHH---HHHHHHHHHHc
Confidence             111      2357776665432     56789998877       89999999999999 88888   99999999999


Q ss_pred             CCeEEEeCccCCh---hhhcccCCeEEEecccccCc---ceeEEeecCcccc
Q psy5413         238 NIPVHMDGARLPL---AEVCASVDTVMFCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       238 gi~li~Dea~~~~---~~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                      |+++++|++|+..   ..+..++|+++.|.+||++|   .++|+++.+++++
T Consensus       176 g~~lvvD~t~a~p~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~  227 (394)
T PRK09028        176 DIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHW  227 (394)
T ss_pred             CCEEEEECCccccccCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHH
Confidence            9999999999832   33456899999999999999   4677777776543

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.86  E-value=1.5e-20  Score=170.86  Aligned_cols=202  Identities=17%  Similarity=0.135  Sum_probs=155.0

Q ss_pred             CCeeeeeccCCcCCC-cHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----CC----CcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISKP-TMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----GK----EAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g~----~~~~~~~~Gs~a~~~al~  134 (285)
                      +.++++|..+++..+ ++++.+++.+.... ...|+......+|++.+++++    |.    +..++++|+++|+..++.
T Consensus        30 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~  109 (393)
T PRK05764         30 GRDVISLGAGEPDFDTPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFM  109 (393)
T ss_pred             cCCEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHH
Confidence            346789998887775 56888887765542 345776667889999999987    22    346888999999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      +++ ++|+.|++++++|.....   ..      ...|.+++.++.++  .+.+|++++++++++       ++++|++++
T Consensus       110 ~~~-~~gd~vl~~~p~y~~~~~---~~------~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~-------~~~~v~~~~  172 (393)
T PRK05764        110 ALL-DPGDEVIIPAPYWVSYPE---MV------KLAGGVPVFVPTGEENGFKLTVEQLEAAITP-------KTKALILNS  172 (393)
T ss_pred             Hhc-CCCCEEEecCCCCcchHH---HH------HHcCCEEEEEecCcccCCcCCHHHHHHhhCc-------cceEEEEEC
Confidence            877 589999998887754432   22      24488888888753  346889999999976       789999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhh-cc--cCCeEEEecccccCc--ceeEEee
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEV-CA--SVDTVMFCLSKGLGA--PVGSILA  277 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~-~~--~~dv~~~s~sK~l~~--p~gg~~~  277 (285)
                      |+||+ |.+++.+++++|+++|++||+++|+||+|..+          ..+ .+  ..++++.|+||.++.  .+.|+++
T Consensus       173 p~NPt-G~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~  251 (393)
T PRK05764        173 PSNPT-GAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAA  251 (393)
T ss_pred             CCCCC-CcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEe
Confidence            99999 99999999999999999999999999997721          111 11  134558999999875  4568888


Q ss_pred             cCccccc
Q psy5413         278 GPEEFIQ  284 (285)
Q Consensus       278 ~~~~~i~  284 (285)
                      +++++++
T Consensus       252 ~~~~~~~  258 (393)
T PRK05764        252 GPKELIK  258 (393)
T ss_pred             cCHHHHH
Confidence            8887654

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.86  E-value=1.5e-20  Score=172.22  Aligned_cols=238  Identities=14%  Similarity=0.093  Sum_probs=153.6

Q ss_pred             CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC--CC--ccCCh
Q psy5413          26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD--DV--YLEDP  101 (285)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~--y~~~~  101 (285)
                      .|..+.++++.+.|+..++.+++.+..++.-                  +.++.+|+|.+|+.+++...  ..  +..++
T Consensus        15 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~~   76 (420)
T TIGR00700        15 LPVFAARAEGAILEDVDGNRLIDFASGIAVL------------------NIGHSHPRVVDAVRTQVAEFTHTCFMVTPYE   76 (420)
T ss_pred             CCeeEEeeeeeEEEeCCCCEEEECccCHHhc------------------cCCCCCHHHHHHHHHHHHhccCccccccCCh
Confidence            3667778888888886655554444443332                  34779999999999887632  11  23456


Q ss_pred             hHHHHHHHHHhHcC---CCcEEEcCChHHHHHHHHHHccccCCCe-EE-ecCCcceeeecccccccc-cccccccc---e
Q psy5413         102 TCKELQEKAAKLAG---KEAAIFVPSGTMGNLIAIMTHCDRRDSE-II-VGDCSHIMLWEQGGASQT-SVYSQIGR---V  172 (285)
Q Consensus       102 ~~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi-~~~~~h~~~~~~~~~~~~-~~~~~~~g---~  172 (285)
                      ...++.++|++...   .+.++|++|||+|++.|++++....|+. |+ ....||+.+.....+... ..+...++   .
T Consensus        77 ~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~  156 (420)
T TIGR00700        77 GYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAP  156 (420)
T ss_pred             HHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCC
Confidence            67889999998863   3578999999999999999988666654 33 367889887543332211 11111111   1


Q ss_pred             eeeeeecCCCC-----------CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeE
Q psy5413         173 LMRGVTNQKDG-----------TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPV  241 (285)
Q Consensus       173 ~~~~~~~~~~~-----------~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~l  241 (285)
                      .+..++.+...           ..+++.+++.+..  ..+.+++++|++|+.++.+|..+.+.+++++|+++|++||+++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gill  234 (420)
T TIGR00700       157 EVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVI--DVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVF  234 (420)
T ss_pred             CcEEeCCCccccccccccchhHHHHHHHHHHHHHh--hcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence            12222221100           0125667776631  0134589999999999988555667888999999999999999


Q ss_pred             EEeCccCChh-----hhcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413         242 HMDGARLPLA-----EVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       242 i~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      |+||+++++.     ......++.  +.+++|.+++  |+|+ +++++++++
T Consensus       235 I~DEV~tg~gr~g~~~a~~~~~~~pDi~~lsK~l~~G~pig~-v~~~~~i~~  285 (420)
T TIGR00700       235 IADEVQTGFARTGAMFACEHEGPEPDLITTAKSLADGLPLSG-VTGRAEIMD  285 (420)
T ss_pred             EEEecccCCcccchhHHHhhcCCCCCEEEeeccccCCcceEE-EEecHHHHh
Confidence            9999988432     122222222  5668999987  6655 555666653

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK09265 aminotransferase AlaT; Validated

Probab=99.86  E-value=2.6e-20  Score=169.92  Aligned_cols=195  Identities=12%  Similarity=0.068  Sum_probs=146.5

Q ss_pred             CCeeeeeccCCcCC----CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc------CC--CcEEEcCChHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK----PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA------GK--EAAIFVPSGTMGNLIA  132 (285)
Q Consensus        65 ~~~~~~~~~~~~~~----~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~------g~--~~~~~~~~Gs~a~~~a  132 (285)
                      |+.+++|..+++..    +.+++.+++.+.......|+......+|++.+++++      +.  +.+++++|+++++..+
T Consensus        32 ~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~  111 (404)
T PRK09265         32 GHKILKLNIGNPAPFGFEAPDEILRDVIRNLPTAQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMA  111 (404)
T ss_pred             CCCeEEecCCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHH
Confidence            56789998877632    566888887765444456776666789999999987      32  3357888888889999


Q ss_pred             HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413         133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCV  210 (285)
Q Consensus       133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i  210 (285)
                      +.+++ ++||+|++++++|.......         ...|.+++.++.+.  ++.+|++++++++++       ++++|++
T Consensus       112 ~~~~~-~~gd~Vlv~~p~y~~~~~~~---------~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~-------~~~~v~l  174 (404)
T PRK09265        112 MQALL-NNGDEVLVPAPDYPLWTAAV---------SLSGGKPVHYLCDEEAGWFPDLDDIRSKITP-------RTKAIVI  174 (404)
T ss_pred             HHHhC-CCCCEEEEeCCCCcChHHHH---------HHcCCEEEEEecccccCCCCCHHHHHHhccc-------cceEEEE
Confidence            98876 68999999988876443321         23366777766532  456899999999876       7899999


Q ss_pred             ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhcccCCeE-EEecccccCc--ceeEEee
Q psy5413         211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVCASVDTV-MFCLSKGLGA--PVGSILA  277 (285)
Q Consensus       211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~~~~dv~-~~s~sK~l~~--p~gg~~~  277 (285)
                      ++|+||| |.+++.+++++|+++|++||+++|+||+|..+          ..+.....++ +.|+||.++.  .+.|+++
T Consensus       175 ~~P~NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v  253 (404)
T PRK09265        175 INPNNPT-GAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMV  253 (404)
T ss_pred             ECCCCCC-CcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEE
Confidence            9999999 99999999999999999999999999997621          1111222344 7999999854  5666776

>PRK08912 hypothetical protein; Provisional

Probab=99.86  E-value=1.5e-20  Score=170.62  Aligned_cols=201  Identities=14%  Similarity=0.105  Sum_probs=153.3

Q ss_pred             CeeeeeccCCcCCC-cHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----C----CC-cEEEcCChHHHHHHHHH
Q psy5413          66 IRTVDIRSDTISKP-TMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----G----KE-AAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        66 ~~~~~~~~~~~~~~-~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g----~~-~~~~~~~Gs~a~~~al~  134 (285)
                      ...++|..+.+..+ ++.+.+++.+.... ...|....+..++++.+++++    |    .+ .+++++|+++++..++.
T Consensus        26 ~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~  105 (387)
T PRK08912         26 HGAINLGQGFPDDPGPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALL  105 (387)
T ss_pred             CCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHH
Confidence            35688888777764 45777777665432 355776666788999999875    3    23 56899999999999998


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      .++ ++||+|++++++|......   .      ...|.+++.++.++ ++.+|++++++.+.+       ++++|++++|
T Consensus       106 ~~~-~~gd~Vlv~~p~y~~~~~~---~------~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~v~l~~p  168 (387)
T PRK08912        106 ALV-EPGDEVVLFQPLYDAYLPL---I------RRAGGVPRLVRLEPPHWRLPRAALAAAFSP-------RTKAVLLNNP  168 (387)
T ss_pred             Hhc-CCCCEEEEeCCCchhhHHH---H------HHcCCEEEEEecCcccCcCCHHHHHHHhCc-------cceEEEEeCC
Confidence            877 5899999998887544332   2      34488888888743 567899999999876       7899999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhc--ccCCeEEEecccccCc--ceeEEeecC
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVC--ASVDTVMFCLSKGLGA--PVGSILAGP  279 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~--~~~dv~~~s~sK~l~~--p~gg~~~~~  279 (285)
                      +||| |.+++.+++++|+++|++||+++|+||+|..+          ....  ...++++.|+||.++.  .+.|+++.+
T Consensus       169 ~NPt-G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~  247 (387)
T PRK08912        169 LNPA-GKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAA  247 (387)
T ss_pred             CCCc-CcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecC
Confidence            9999 99999999999999999999999999997511          1111  1234669999999874  667888888


Q ss_pred             ccccc
Q psy5413         280 EEFIQ  284 (285)
Q Consensus       280 ~~~i~  284 (285)
                      +++++
T Consensus       248 ~~~~~  252 (387)
T PRK08912        248 PPLLR  252 (387)
T ss_pred             HHHHH
Confidence            77654

>PRK07683 aminotransferase A; Validated

Probab=99.86  E-value=2.7e-20  Score=168.88  Aligned_cols=201  Identities=15%  Similarity=0.068  Sum_probs=154.3

Q ss_pred             CeeeeeccCCcCCC-cHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----CC----C-cEEEcCChHHHHHHHHH
Q psy5413          66 IRTVDIRSDTISKP-TMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----GK----E-AAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        66 ~~~~~~~~~~~~~~-~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g~----~-~~~~~~~Gs~a~~~al~  134 (285)
                      +++++|..+.+..+ ++.+.+++.+.... ...|.+.+...+|++.+++++    |.    + .+++++|+++|+..++.
T Consensus        28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~  107 (387)
T PRK07683         28 DNLISLTIGQPDFPTPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFR  107 (387)
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHH
Confidence            45688988877654 56888888876653 346766677889999999987    32    3 56899999999999998


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      +++ ++|+.|+++.+.+.......         ...|.+++.++.++ ++.+|.+++++.+++       ++++|++++|
T Consensus       108 ~l~-~~gd~Vl~~~p~y~~~~~~~---------~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~i~i~~p  170 (387)
T PRK07683        108 TIL-EPGTEVILPAPIYPGYEPII---------RLCGAKPVFIDTRSTGFRLTAEALENAITE-------KTRCVVLPYP  170 (387)
T ss_pred             HhC-CCCCEEEEcCCCccchHHHH---------HHcCCEEEEeecCcccCCCCHHHHHHhcCc-------CceEEEEeCC
Confidence            877 58999999887665433221         23488888887643 455788999999876       7899999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------hhccc-----CCeEEEecccccCc--ceeEEeecCc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------EVCAS-----VDTVMFCLSKGLGA--PVGSILAGPE  280 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~~~-----~dv~~~s~sK~l~~--p~gg~~~~~~  280 (285)
                      +||| |.+++.+++++|+++|+++|+++|+||+|..+.      .+...     -.+++.|+||.++.  .+.|++++++
T Consensus       171 ~NPt-G~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~  249 (387)
T PRK07683        171 SNPT-GVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPS  249 (387)
T ss_pred             CCCC-CcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEEEEcCH
Confidence            9999 999999999999999999999999999987221      11111     12459999999874  6778898888


Q ss_pred             cccc
Q psy5413         281 EFIQ  284 (285)
Q Consensus       281 ~~i~  284 (285)
                      ++++
T Consensus       250 ~l~~  253 (387)
T PRK07683        250 YLAK  253 (387)
T ss_pred             HHHH
Confidence            7664

>PRK06105 aminotransferase; Provisional

Probab=99.85  E-value=1.4e-20  Score=173.67  Aligned_cols=235  Identities=14%  Similarity=0.092  Sum_probs=152.6

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC---Cc--cCCh
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD---VY--LEDP  101 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~---~y--~~~~  101 (285)
                      |..+.++.+.+.|+..++.+++.+..|+..                  +.++.||++.+|+.+++....   .+  ..++
T Consensus        31 p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~   92 (460)
T PRK06105         31 PLVIERGEGIYVYDDAGKRYIEGMAGLWSV------------------ALGFSEQRLVEAAARQMKKLPFYHTFSHKSHG   92 (460)
T ss_pred             CceEEeeeEEEEEECCCCEEEEcchhHHhc------------------cCCCCCHHHHHHHHHHHHhCCCeecccccCCH
Confidence            556667777777775554444444433332                  457899999999998876421   22  2456


Q ss_pred             hHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCC-eEEe-cCCcceeeecccccccccccccccc
Q psy5413         102 TCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDS-EIIV-GDCSHIMLWEQGGASQTSVYSQIGR  171 (285)
Q Consensus       102 ~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g  171 (285)
                      ...++.++|++++.  .++++|++|||+|+++|++++...      +++ +|+. ...||+.+.....+.....+.+.++
T Consensus        93 ~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~  172 (460)
T PRK06105         93 PVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFD  172 (460)
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccC
Confidence            68899999999874  467899999999999999997422      233 3443 6788988754322221111212222


Q ss_pred             e---eeeeeecCCCCC-------------CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHH
Q psy5413         172 V---LMRGVTNQKDGT-------------FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQ  235 (285)
Q Consensus       172 ~---~~~~~~~~~~~~-------------~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~  235 (285)
                      .   .+..++.+....             .+++++++++...   +.+++++|++|+.++..|....|++++++|+++|+
T Consensus       173 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~---~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~  249 (460)
T PRK06105        173 LPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAE---GPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLR  249 (460)
T ss_pred             CCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHc---CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHH
Confidence            1   122222211100             1246677777431   23479999999999888556678999999999999


Q ss_pred             HcCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413         236 EHNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       236 ~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                      +||+++|+||+++++     ....+..++.  +.+++|.+++   |.++++.. ++++
T Consensus       250 ~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~-~~i~  306 (460)
T PRK06105        250 KYDILLVADEVICGFGRTGNMFGCETFGIKPDILVMSKQLSSSYQPLSAVLMN-EKVY  306 (460)
T ss_pred             HcCCeEEEeccccCCCcCchhhhHHhcCCCCCeeeeecccccCcccceEEEEc-HHHH
Confidence            999999999998743     2233445555  6788899976   67766554 4443

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.85  E-value=1.3e-20  Score=171.52  Aligned_cols=200  Identities=18%  Similarity=0.168  Sum_probs=153.4

Q ss_pred             CCeeeeeccCCcCC--CcHHHHHHHHhcccCC--------CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK--PTMEMKNYMFNCEVGD--------DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~~--------~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~  134 (285)
                      ++++++|.++++-+  .+|+++++..+.....        ..++....+.+||+.|++++|.+.++++++|..||..++.
T Consensus       101 ~r~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~all~sSGy~AN~~~i~  180 (476)
T PLN02955        101 FKKLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKEDCLVCPTGFAANMAAMV  180 (476)
T ss_pred             CceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHH
Confidence            46899999887776  7889998877665421        1344556788999999999999999999999999999998


Q ss_pred             Hcc-------------ccCCCeEEecCCcceeeeccccccccccccccc-ceeeeeeecCCCCCCCHHHHHHHhcccccc
Q psy5413         135 THC-------------DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIG-RVLMRGVTNQKDGTFDLDEMEAKFSTADNI  200 (285)
Q Consensus       135 ~~~-------------~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~  200 (285)
                      ++.             ..+++.|+++...|.+......++      ... +.+++.++.     .|+++|+++++..   
T Consensus       181 aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls------~~~~~a~~~~f~H-----ND~~~Le~~L~~~---  246 (476)
T PLN02955        181 AIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLA------ERQGNVEVFVYRH-----CDMYHLNSLLSSC---  246 (476)
T ss_pred             HHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhc------cccCCceEEEeCC-----CCHHHHHHHHHhC---
Confidence            862             123455777888898776544443      221 345555554     4999999999763   


Q ss_pred             cCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C--------hhh---hcccCCeEEEeccccc
Q psy5413         201 HCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P--------LAE---VCASVDTVMFCLSKGL  268 (285)
Q Consensus       201 ~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~--------~~~---~~~~~dv~~~s~sK~l  268 (285)
                       .++.++|+++++.++. |.+.|   |++|.++|++||++||+||+|+ +        ...   +....|+++.|++|.+
T Consensus       247 -~~~~~~Vv~EgV~Smd-Gdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~  321 (476)
T PLN02955        247 -KMKRKVVVTDSLFSMD-GDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAA  321 (476)
T ss_pred             -CCCceEEEEeCCCCCC-CCcCC---HHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccch
Confidence             2356899999999998 99999   9999999999999999999988 1        111   1235678899999999


Q ss_pred             CcceeEEeecCccccc
Q psy5413         269 GAPVGSILAGPEEFIQ  284 (285)
Q Consensus       269 ~~p~gg~~~~~~~~i~  284 (285)
                      |. .||++++++++++
T Consensus       322 G~-~GGfi~gs~~~~~  336 (476)
T PLN02955        322 GC-HGGFIACSKKWKQ  336 (476)
T ss_pred             hc-cCceeecHHHHHH
Confidence            86 7899999886553

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.85  E-value=1.2e-20  Score=172.67  Aligned_cols=237  Identities=14%  Similarity=0.160  Sum_probs=155.6

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC----CccCChh
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD----VYLEDPT  102 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~----~y~~~~~  102 (285)
                      |..+.++.+.+.|+..++.+++.+..++.-                  +.++.+|+|.+|+.+++....    ....++.
T Consensus        23 p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~   84 (425)
T PRK07495         23 QIYADRAENAEIWDKEGRRYIDFAAGIAVV------------------NTGHRHPRVIAAVKAQLDRFTHTCHQVVPYEN   84 (425)
T ss_pred             CeeEEeeeecEEEeCCCCEEEEccccHHhh------------------ccCCCCHHHHHHHHHHHhhccCcccCccCCHH
Confidence            567778888888886655554444444331                  348899999999998876321    1234566


Q ss_pred             HHHHHHHHHhHcCC---CcEEEcCChHHHHHHHHHHccccCCCe-EEe-cCCcceeeecccccccc-ccccccc-----c
Q psy5413         103 CKELQEKAAKLAGK---EAAIFVPSGTMGNLIAIMTHCDRRDSE-IIV-GDCSHIMLWEQGGASQT-SVYSQIG-----R  171 (285)
Q Consensus       103 ~~~l~~~la~~~g~---~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi~-~~~~h~~~~~~~~~~~~-~~~~~~~-----g  171 (285)
                      ..++.+++++.+..   ++++|++|||+|++.|++++...+|+. |+. ...||+.+.....+... ..+...+     +
T Consensus        85 ~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~  164 (425)
T PRK07495         85 YVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPD  164 (425)
T ss_pred             HHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCC
Confidence            88899999998742   578999999999999999987656653 443 67889887433222111 1122211     2


Q ss_pred             eeeeeeecCCCCC---CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413         172 VLMRGVTNQKDGT---FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL  248 (285)
Q Consensus       172 ~~~~~~~~~~~~~---~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~  248 (285)
                      ...+++|....+.   .+++++++.++..  .+.+++++|++|+.++.+|....|.+++++|+++|++||+++|+||+++
T Consensus       165 ~~~~~~~~~~~g~~~~~~~~~l~~~~~~~--~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t  242 (425)
T PRK07495        165 VYHVPFPVELHGVSVEQSLAALDKLFKAD--VDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQT  242 (425)
T ss_pred             eEEecCCcccccccHHHHHHHHHHHHHhc--cCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence            2222333211111   1245567666421  1234799999999988763366899999999999999999999999988


Q ss_pred             Chh-----hhcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413         249 PLA-----EVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       249 ~~~-----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      ++.     ...+..++.  +.+++|.+++  |+|+ +++++++++
T Consensus       243 G~gr~G~~~a~~~~gv~pDi~tlsK~l~~G~piga-v~~~~~i~~  286 (425)
T PRK07495        243 GFARTGKLFAMEHHEVAADLTTMAKGLAGGFPLAA-VTGRAEIMD  286 (425)
T ss_pred             cCCcCCCceeecccCCCCCEEeehhhhcCCccceE-EEEcHHHHh
Confidence            432     122333444  7888999987  6655 555566543

>PLN02368 alanine transaminase

Probab=99.85  E-value=1.3e-20  Score=171.33  Aligned_cols=195  Identities=14%  Similarity=0.159  Sum_probs=140.5

Q ss_pred             CcHHHHHHHHhccc---CCCCccCChhHHHHHHHHHhHc----CC----CcEEEcCChHHHHHHHHHHccccCCCeEEec
Q psy5413          79 PTMEMKNYMFNCEV---GDDVYLEDPTCKELQEKAAKLA----GK----EAAIFVPSGTMGNLIAIMTHCDRRDSEIIVG  147 (285)
Q Consensus        79 ~~~~v~~a~~~~~~---~~~~y~~~~~~~~l~~~la~~~----g~----~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~  147 (285)
                      +.+.+.+++.....   +...|+...+..+|++.+++++    |.    +.+++++|+++++..++.+++..+||+|+++
T Consensus        82 p~~~i~~a~~~l~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~  161 (407)
T PLN02368         82 PADAIARAKHYLSLTSGGLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVP  161 (407)
T ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEe
Confidence            34455555544221   1346776667788999999986    42    3457888889999999988763589999999


Q ss_pred             CCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHH
Q psy5413         148 DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQ  225 (285)
Q Consensus       148 ~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~  225 (285)
                      ++++.......         ...|.+++.++..+  ++.+|++++++.+++.. ....+++++++++|+||| |.+++.+
T Consensus       162 ~P~Y~~y~~~~---------~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~-~~~~~~k~l~l~nP~NPT-G~v~s~e  230 (407)
T PLN02368        162 VPQYPLYSATI---------SLLGGTLVPYYLEESENWGLDVNNLRQSVAQAR-SKGITVRAMVIINPGNPT-GQCLSEA  230 (407)
T ss_pred             CCCCccHHHHH---------HHcCCEEEEEecccccCCCCCHHHHHHHHHHHh-hcCCCeEEEEEECCCCCC-CccCCHH
Confidence            88876554322         23478888888653  36789999999986411 112268999999999999 9999999


Q ss_pred             HHHHHHHHHHHcCCeEEEeCccCChh--------h---hcc--------cCCeE-EEeccccc-C--cceeEEee---cC
Q psy5413         226 WLRELKARCQEHNIPVHMDGARLPLA--------E---VCA--------SVDTV-MFCLSKGL-G--APVGSILA---GP  279 (285)
Q Consensus       226 ~l~~i~~la~~~gi~li~Dea~~~~~--------~---~~~--------~~dv~-~~s~sK~l-~--~p~gg~~~---~~  279 (285)
                      ++++|+++|++||++||+||+|..+.        .   +..        ...++ +.|+||.+ +  |.+.|+++   ++
T Consensus       231 ~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~  310 (407)
T PLN02368        231 NLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP  310 (407)
T ss_pred             HHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCC
Confidence            99999999999999999999987221        1   100        11244 89999987 3  57888887   46


Q ss_pred             ccccc
Q psy5413         280 EEFIQ  284 (285)
Q Consensus       280 ~~~i~  284 (285)
                      +++++
T Consensus       311 ~~li~  315 (407)
T PLN02368        311 PKTVE  315 (407)
T ss_pred             HHHHH
Confidence            66654

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.85  E-value=1.1e-20  Score=172.80  Aligned_cols=224  Identities=11%  Similarity=0.087  Sum_probs=146.8

Q ss_pred             cccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccC----CcCCCcHHHHHHHHhcccC--CCC--ccCC
Q psy5413          29 LVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSD----TISKPTMEMKNYMFNCEVG--DDV--YLED  100 (285)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~--~~~--y~~~  100 (285)
                      .+.++.+.+.|+..                      |++++||.++    +.++.+|+|.+|+.+++..  +..  ...+
T Consensus        29 ~i~~a~G~~l~D~d----------------------G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~   86 (429)
T PRK06173         29 PVERADGVMITLKD----------------------GRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGGFTH   86 (429)
T ss_pred             eEEeceeeEEEcCC----------------------CCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCccccccCC
Confidence            35666777777654                      4555565443    4578999999999988764  211  2246


Q ss_pred             hhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCC-eEEe-cCCcceeeeccccccc-ccccccc
Q psy5413         101 PTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDS-EIIV-GDCSHIMLWEQGGASQ-TSVYSQI  169 (285)
Q Consensus       101 ~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~-~vi~-~~~~h~~~~~~~~~~~-~~~~~~~  169 (285)
                      +...+|.+++++...  .++++|++|||+|++.|++++...      +++ +|+. ...||+.+.....+.. ...+...
T Consensus        87 ~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~  166 (429)
T PRK06173         87 EPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGL  166 (429)
T ss_pred             HHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhc
Confidence            778899999999873  567899999999999999998743      333 3443 5788987654322211 0112111


Q ss_pred             cc-----eeeeeeecCCC----CCCCHHHHHHHhcccccccCCceEEEEEecc-cCCCCeeeCCHHHHHHHHHHHHHcCC
Q psy5413         170 GR-----VLMRGVTNQKD----GTFDLDEMEAKFSTADNIHCASTSLVCVENT-HNYCGGTVLPMQWLRELKARCQEHNI  239 (285)
Q Consensus       170 ~g-----~~~~~~~~~~~----~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~-~n~~gG~~~~~~~l~~i~~la~~~gi  239 (285)
                      ++     ...++.|....    ...+++.+++.|+.    +++++++|++|+. ++..|..+.|++++++|+++|++||+
T Consensus       167 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~----~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~  242 (429)
T PRK06173        167 FNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQ----KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGV  242 (429)
T ss_pred             ccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHh----CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCC
Confidence            11     11122221110    01246778888864    3458999999996 99875566889999999999999999


Q ss_pred             eEEEeCccCChh-----hhcccCCeE--EEecccccCc---ceeEEeec
Q psy5413         240 PVHMDGARLPLA-----EVCASVDTV--MFCLSKGLGA---PVGSILAG  278 (285)
Q Consensus       240 ~li~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~---p~gg~~~~  278 (285)
                      ++|+||+++++.     ...++.++.  +.+++|.+++   |.++++..
T Consensus       243 llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG~~p~~a~~~~  291 (429)
T PRK06173        243 LLIFDEIATGFGRTGKLFALEHAGVVPDIMCIGKALTGGYLTLSATITT  291 (429)
T ss_pred             eEEecchhcCCCcCCcchHHHhcCCCCCEEEeehhhhCCccccceEEec
Confidence            999999988432     122333332  4458899976   56665543

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.85  E-value=5.8e-21  Score=170.67  Aligned_cols=199  Identities=17%  Similarity=0.158  Sum_probs=149.8

Q ss_pred             CeeeeeccCC-cCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCC
Q psy5413          66 IRTVDIRSDT-ISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDS  142 (285)
Q Consensus        66 ~~~~~~~~~~-~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~  142 (285)
                      .++++|..+. +..++|++++++.+.......|+. +...++|+.++++++.+  .+++++|+++++..++.+++ ++|+
T Consensus        19 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~-~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~-~~gd   96 (346)
T TIGR01141        19 KEVIKLNSNENPFGPPPKAKEALRAEADKLHRYPD-PDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAFL-EPGD   96 (346)
T ss_pred             CceEEccCCCCCCCCCHHHHHHHHHhHHHhhcCCC-CCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhc-CCCC
Confidence            4689998655 444778999999887544445653 33589999999999854  46888888999988888876 5899


Q ss_pred             eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413         143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL  222 (285)
Q Consensus       143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~  222 (285)
                      +|++++++|.....   ..      ...|.+++.++.++++.+|++++++++.+       ++++|++++|+||+ |.++
T Consensus        97 ~v~~~~p~y~~~~~---~~------~~~g~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~v~l~~p~Npt-G~~~  159 (346)
T TIGR01141        97 AVLVPPPTYSMYEI---SA------KIHGAEVVKVPLDEDGQLDLEDILVAIDD-------KPKLVFLCSPNNPT-GNLL  159 (346)
T ss_pred             EEEEcCCCHHHHHH---HH------HHcCCeEEEeccCCCCCCCHHHHHHhcCC-------CCCEEEEeCCCCCC-CCCC
Confidence            99998877643221   22      34588899998877777999999998866       78999999999999 9999


Q ss_pred             CHHHHHHHHHHHHHcCCeEEEeCccCChh------hh-cccCC-eEEEecccccCc--ceeEEeecCccccc
Q psy5413         223 PMQWLRELKARCQEHNIPVHMDGARLPLA------EV-CASVD-TVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       223 ~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~-~~~~d-v~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      +.++++++++.|+ +|+++|+|++|..+.      .. ....+ +++.|+||+++.  ++.|+++.++++++
T Consensus       160 ~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~  230 (346)
T TIGR01141       160 SRSDIEAVLERTP-EDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIID  230 (346)
T ss_pred             CHHHHHHHHHhCC-CCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecCHHHHH
Confidence            9777777777665 699999999977221      11 11223 448999999964  56688888877654

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK09105 putative aminotransferase; Provisional

Probab=99.85  E-value=6.8e-21  Score=171.72  Aligned_cols=198  Identities=16%  Similarity=0.158  Sum_probs=151.4

Q ss_pred             CeeeeeccCCcC-CCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCC
Q psy5413          66 IRTVDIRSDTIS-KPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDS  142 (285)
Q Consensus        66 ~~~~~~~~~~~~-~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~  142 (285)
                      +.+++|..+.+. .++|.+.+++.+.......|... ...+|++.+++++|.+  .+++++|+++++..++.+++ .+||
T Consensus        43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~-~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~-~~gd  120 (370)
T PRK09105         43 EGAVFLNANECPLGPSPAARDAAARSAALSGRYDLE-LEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFT-SPTA  120 (370)
T ss_pred             CCcEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHc-CCCC
Confidence            456788765554 46889999988765433456643 4889999999998764  46889999999999999887 5899


Q ss_pred             eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413         143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL  222 (285)
Q Consensus       143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~  222 (285)
                      +|++++++|......   .      ...|.+++.++..+++.+|++++++. .+       ++++|++++|+||| |.++
T Consensus       121 ~Vli~~P~y~~~~~~---~------~~~g~~~~~v~~~~~~~~d~~~l~~~-~~-------~~~~v~l~nP~NPT-G~~~  182 (370)
T PRK09105        121 GLVTADPTYEAGWRA---A------DAQGAPVAKVPLRADGAHDVKAMLAA-DP-------NAGLIYICNPNNPT-GTVT  182 (370)
T ss_pred             EEEEeCCChHHHHHH---H------HHcCCeEEEecCCCCCCCCHHHHHhc-CC-------CCCEEEEeCCCCCC-CcCc
Confidence            999999887655432   2      34588999988866677899999876 34       67899999999999 9999


Q ss_pred             CHHHHHHHHHHHHHcCCeEEEeCccCCh------hhhc-ccCCeE-EEecccccCc--ceeEEeecCccccc
Q psy5413         223 PMQWLRELKARCQEHNIPVHMDGARLPL------AEVC-ASVDTV-MFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       223 ~~~~l~~i~~la~~~gi~li~Dea~~~~------~~~~-~~~dv~-~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      +.++++++++.| ++|+++|+||+|..+      ..+. .+.+++ +.|+||.+|.  .+.|++++++++++
T Consensus       183 ~~~~l~~l~~~~-~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~  253 (370)
T PRK09105        183 PRADIEWLLANK-PAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLA  253 (370)
T ss_pred             CHHHHHHHHHhC-CCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHHH
Confidence            999999999875 469999999998622      1121 234555 8999999875  56788888887664

>KOG1549|consensus

Probab=99.85  E-value=1.5e-20  Score=165.67  Aligned_cols=198  Identities=18%  Similarity=0.223  Sum_probs=159.4

Q ss_pred             CCeeeeeccCCcCCCcHHHHHHHHhcccC-----CCC-ccC--ChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISKPTMEMKNYMFNCEVG-----DDV-YLE--DPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~-----~~~-y~~--~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~  134 (285)
                      +.+.+.+.++..+..+++|++++.+....     +.. |+.  ....++.|+.+|++++++.  ++|++++|+++.++++
T Consensus        41 ~~~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~  120 (428)
T KOG1549|consen   41 GTRPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVLK  120 (428)
T ss_pred             CCccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHHH
Confidence            34567777777777899999998876542     334 543  2348899999999998754  6999999999999999


Q ss_pred             HccccCCC----eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413         135 THCDRRDS----EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCV  210 (285)
Q Consensus       135 ~~~~~~g~----~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i  210 (285)
                      ......++    +||+.+..|.+........      +..|..+..+|.+.++..|++.+++.|++       +|++|.+
T Consensus       121 ~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l------~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~-------~T~lv~I  187 (428)
T KOG1549|consen  121 GVARFFGDKTKKHIITLQTEHPCVLDSCRAL------QEEGLEVTYLPVEDSGLVDISKLREAIRS-------KTRLVSI  187 (428)
T ss_pred             HhhccccccccceEEEecccCcchhHHHHHH------HhcCeEEEEeccCccccccHHHHHHhcCC-------CceEEEE
Confidence            98765566    7888888887765544333      34578888888877888999999999999       9999999


Q ss_pred             ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCcceeEEeecC
Q psy5413         211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPVGSILAGP  279 (285)
Q Consensus       211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~  279 (285)
                      ..++|.. |.+.|   ++||..+|+++|+.+++|.+|+ +   +..-..++|.++++.|||+|.|-.|++..+
T Consensus       188 ~~Vnn~~-gv~~P---v~EI~~icr~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~ygp~~iGaLYvr  256 (428)
T KOG1549|consen  188 MHVNNEI-GVLQP---VKEIVKICREEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIYGPPGIGALYVR  256 (428)
T ss_pred             EecccCc-ccccc---HHHHHHHhCcCCcEEEeehhhhcCCccccHHHcCchheeeecccccCCCcceEEEEc
Confidence            9999999 99999   9999999999999999999988 3   333345899999999999999634555443

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.85  E-value=1.9e-20  Score=169.31  Aligned_cols=163  Identities=21%  Similarity=0.244  Sum_probs=132.1

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|...++++.+++++|.+.+++++||++|+..++.+++ ++||+|+++...|..+.... ...      ...|.++..+
T Consensus        52 ~~p~~~~le~~la~l~g~~~~~~~~sG~~Ai~~al~al~-~~Gd~Vl~~~~~~~~t~~~~~~~~------~~~g~~v~~v  124 (380)
T TIGR01325        52 ANPTVAAFEERIAALEGAERAVATATGMSAIQAALMTLL-QAGDHVVASRSLFGSTVGFISEIL------PRFGIEVSFV  124 (380)
T ss_pred             CCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEecCCcchHHHHHHHHH------HHhCCEEEEE
Confidence            467799999999999999989999999999999998876 68999998877665432211 111      3457777777


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~  254 (285)
                      +..     |++++++++++       ++++|++++|+||+ |.+.|   +++|+++|+++|+++|+|++++..   ..+.
T Consensus       125 ~~~-----d~~~l~~~i~~-------~tklV~le~p~np~-g~~~d---l~~I~~la~~~gi~livD~a~~~~~~~~pl~  188 (380)
T TIGR01325       125 DPT-----DLNAWEAAVKP-------NTKLVFVETPSNPL-GELVD---IAALAELAHAIGALLVVDNVFATPVLQQPLK  188 (380)
T ss_pred             CCC-----CHHHHHHhcCC-------CceEEEEECCCCCC-CeeeC---HHHHHHHHHHcCCEEEEECCCcccccCCchh
Confidence            652     78999999876       78999999999999 89999   999999999999999999998722   2233


Q ss_pred             ccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413         255 ASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ  284 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~  284 (285)
                      .++|+++.|++|++++   .+||++++++++++
T Consensus       189 ~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~  221 (380)
T TIGR01325       189 LGADVVVYSATKHIDGQGRVMGGVIAGSEELMA  221 (380)
T ss_pred             hCCCEEEeeccceecCCCCeEEEEEEeCHHHHH
Confidence            4789999999999987   46788888877654

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.85  E-value=2.9e-20  Score=169.49  Aligned_cols=197  Identities=14%  Similarity=0.099  Sum_probs=150.1

Q ss_pred             CCeeeeeccCCcC-----CCcHHHHHHHHhcccCC--CCccCChhHHHHHHHHHhHcCC-------CcEEEcCChHHHHH
Q psy5413          65 NIRTVDIRSDTIS-----KPTMEMKNYMFNCEVGD--DVYLEDPTCKELQEKAAKLAGK-------EAAIFVPSGTMGNL  130 (285)
Q Consensus        65 ~~~~~~~~~~~~~-----~~~~~v~~a~~~~~~~~--~~y~~~~~~~~l~~~la~~~g~-------~~~~~~~~Gs~a~~  130 (285)
                      ++.+++|..+.+.     .+.+.+.+++.+.....  ..|++.....++++.++++++.       +.+++++|+++++.
T Consensus        30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~  109 (401)
T TIGR01264        30 EKPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIE  109 (401)
T ss_pred             CCCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHH
Confidence            3567888887764     46778999887765532  3576677788999999999862       34688999999999


Q ss_pred             HHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEE
Q psy5413         131 IAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLV  208 (285)
Q Consensus       131 ~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v  208 (285)
                      .++.+++ ++|++|+++++++.....   ..      ...|.+++.++...  ++.+|++.+++.+++       ++++|
T Consensus       110 ~~~~~l~-~~gd~v~i~~P~y~~~~~---~~------~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~v  172 (401)
T TIGR01264       110 MCIAALA-NAGQNILVPRPGFPLYET---LA------ESMGIEVKLYNLLPDKSWEIDLKQLESLIDE-------KTAAL  172 (401)
T ss_pred             HHHHHhC-CCCCEEEEeCCCChhHHH---HH------HHcCCEEEEeecCCccCCCCCHHHHHHHhcc-------CceEE
Confidence            9999887 589999998887644332   22      34477887776532  457899999998876       67999


Q ss_pred             EEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcccCCe-EEEecccccCc--ceeEE
Q psy5413         209 CVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVCASVDT-VMFCLSKGLGA--PVGSI  275 (285)
Q Consensus       209 ~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~~~dv-~~~s~sK~l~~--p~gg~  275 (285)
                      ++++|+||| |.+++.+++++|+++|+++|+++|+||+|..+.          .+.....+ ++.||||.++.  .+.|+
T Consensus       173 ~~~~p~NPt-G~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~  251 (401)
T TIGR01264       173 IVNNPSNPC-GSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGW  251 (401)
T ss_pred             EEcCCCCCC-CCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEEE
Confidence            999999999 899999999999999999999999999987221          11122224 48999997544  67777


Q ss_pred             eecC
Q psy5413         276 LAGP  279 (285)
Q Consensus       276 ~~~~  279 (285)
                      ++..
T Consensus       252 iv~~  255 (401)
T TIGR01264       252 IIIH  255 (401)
T ss_pred             EEec
Confidence            7754

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.85  E-value=1.3e-20  Score=172.90  Aligned_cols=210  Identities=17%  Similarity=0.090  Sum_probs=140.4

Q ss_pred             CCeeeeeccCC----cCCCcHHHHHHHHhcccCCCCcc-CChhHHHHHHHHHhHcC-CCcEEEcCChHHHHHHHHHHccc
Q psy5413          65 NIRTVDIRSDT----ISKPTMEMKNYMFNCEVGDDVYL-EDPTCKELQEKAAKLAG-KEAAIFVPSGTMGNLIAIMTHCD  138 (285)
Q Consensus        65 ~~~~~~~~~~~----~~~~~~~v~~a~~~~~~~~~~y~-~~~~~~~l~~~la~~~g-~~~~~~~~~Gs~a~~~al~~~~~  138 (285)
                      |++++||.++.    .++++|+|.+++.+++.....|. .++...+|+++|++++. .+.++|++|||+|++.|++++..
T Consensus        47 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~  126 (423)
T TIGR00713        47 GNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGTSYGAPTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARG  126 (423)
T ss_pred             CCEEEEccccccccccCCCCHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHH
Confidence            56677776543    35789999999998887533343 56678999999999875 45789999999999999998765


Q ss_pred             cCC-CeEEe-cCCcceeeeccccccc---cc----ccc---cccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceE
Q psy5413         139 RRD-SEIIV-GDCSHIMLWEQGGASQ---TS----VYS---QIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       139 ~~g-~~vi~-~~~~h~~~~~~~~~~~---~~----~~~---~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                      ..| ++|+. ...||+.+.....++.   ..    ...   ...+...+.++.     .|++++++.+++    +.++++
T Consensus       127 ~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~----~~~~~a  197 (423)
T TIGR00713       127 YTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPY-----NDLEALEEVFEE----YGEEIA  197 (423)
T ss_pred             hhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCC-----CCHHHHHHHHHH----cCCcEE
Confidence            444 34554 4567876543332210   00    000   000111222221     389999999974    233799


Q ss_pred             EEEEecccCCCCeeeCC-HHHHHHHHHHHHHcCCeEEEeCccCChh----hhcccCCeE--EEecccccCc-ceeEEeec
Q psy5413         207 LVCVENTHNYCGGTVLP-MQWLRELKARCQEHNIPVHMDGARLPLA----EVCASVDTV--MFCLSKGLGA-PVGSILAG  278 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~-~~~l~~i~~la~~~gi~li~Dea~~~~~----~~~~~~dv~--~~s~sK~l~~-p~gg~~~~  278 (285)
                      +|++++.++.+ |.+.+ .+++++|+++|++||+++|+||+|+++.    ......++.  +.+++|.+++ ...|++++
T Consensus       198 avi~ep~~~~~-G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~pDi~t~sK~l~~G~pig~v~~  276 (423)
T TIGR00713       198 GVIVEPVAGNM-GVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEPDLTTLGKIIGGGLPVGAFGG  276 (423)
T ss_pred             EEEEeCCCCCC-CCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCcchhhhhhhhcCCCceeeeeE
Confidence            99999866666 66666 6999999999999999999999988442    122222222  4578999986 33455666


Q ss_pred             Cccccc
Q psy5413         279 PEEFIQ  284 (285)
Q Consensus       279 ~~~~i~  284 (285)
                      ++++++
T Consensus       277 ~~~i~~  282 (423)
T TIGR00713       277 RREIME  282 (423)
T ss_pred             HHHHHH
Confidence            666553

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.85  E-value=1.7e-20  Score=169.24  Aligned_cols=192  Identities=13%  Similarity=0.194  Sum_probs=146.7

Q ss_pred             CcHHHHHHHHhcccCC--CCc-------cCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCC
Q psy5413          79 PTMEMKNYMFNCEVGD--DVY-------LEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDC  149 (285)
Q Consensus        79 ~~~~v~~a~~~~~~~~--~~y-------~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~  149 (285)
                      ....+.+++.+...+.  ..+       +..+...++++.+++++|.+.++++++|++++..++.+++ ++|+.|+++..
T Consensus        20 ~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l~-~~gd~Vl~~~~   98 (370)
T TIGR02539        20 LTEAARKALVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALC-KEGDWVVLDGL   98 (370)
T ss_pred             CcHHHHHHHHHHhhccccccccccccccccchHHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHhh-CCCCEEEECCc
Confidence            4667777777665431  111       1234578889999999999999899999999999999987 68999999888


Q ss_pred             cceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHH
Q psy5413         150 SHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWL  227 (285)
Q Consensus       150 ~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l  227 (285)
                      .|.+.+...         ...|.+++.++..  +++.+|+++|++++++....+..++++|++++|+|++ |.+.|   +
T Consensus        99 ~h~s~~~~~---------~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~-G~~~~---l  165 (370)
T TIGR02539        99 AHYTSYVAA---------ERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEY-GNLPD---A  165 (370)
T ss_pred             ccHHHHHHH---------HHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCC-ccccC---H
Confidence            887665422         2458888888864  2467899999999964211112267899999999999 89999   9


Q ss_pred             HHHHHHHHHcCCeEEEeCccC-Ch---hhhcccCCeEEEecccccCc-ceeEEeecCccccc
Q psy5413         228 RELKARCQEHNIPVHMDGARL-PL---AEVCASVDTVMFCLSKGLGA-PVGSILAGPEEFIQ  284 (285)
Q Consensus       228 ~~i~~la~~~gi~li~Dea~~-~~---~~~~~~~dv~~~s~sK~l~~-p~gg~~~~~~~~i~  284 (285)
                      ++|.++|+++|+++|+||+|+ +.   .....+.|+++.|+||++++ ...|++++++++++
T Consensus       166 ~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~  227 (370)
T TIGR02539       166 GKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGVLGMSEEWED  227 (370)
T ss_pred             HHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHh
Confidence            999999999999999999998 22   22234689999999999986 33578888887765

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.85  E-value=2.5e-20  Score=169.63  Aligned_cols=228  Identities=18%  Similarity=0.192  Sum_probs=149.5

Q ss_pred             CCCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCCC---ccCCh
Q psy5413          25 PTPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDDV---YLEDP  101 (285)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~---y~~~~  101 (285)
                      +.|..+.++.+.+.|+..++.+++.+..++..                  +.++.||++.+++.+++.....   ...++
T Consensus        21 ~~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~   82 (408)
T PRK04612         21 PRQVVLERGQGSRVWDDQGREYLDLAAGIAVC------------------GLGHNDPDLVAALTEQAGKLWHTSNVFYSA   82 (408)
T ss_pred             CCCceEEEeeeCEEEECCCCEEEEcCccHhhc------------------cCCCCCHHHHHHHHHHHHhccccccccCCH
Confidence            33566777888888886555444444333321                  4478999999999988763211   11345


Q ss_pred             hHHHHHHHHHhHcC-CCcEEEcCChHHHHHHHHHHcccc---CC----C-eEEe-cCCcceeeecccccccccccccccc
Q psy5413         102 TCKELQEKAAKLAG-KEAAIFVPSGTMGNLIAIMTHCDR---RD----S-EIIV-GDCSHIMLWEQGGASQTSVYSQIGR  171 (285)
Q Consensus       102 ~~~~l~~~la~~~g-~~~~~~~~~Gs~a~~~al~~~~~~---~g----~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g  171 (285)
                      ...++.++|++..+ .+.++|++|||+|++.|++++...   +|    + +|+. ...||+.+.........+.+...++
T Consensus        83 ~~~~la~~L~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~  162 (408)
T PRK04612         83 PPLKLAEELVTASRFAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYE  162 (408)
T ss_pred             HHHHHHHHHHhhCCCCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCC
Confidence            57788999988764 467899999999999999998742   12    3 3443 5778987754322221122222111


Q ss_pred             e---eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC-CHHHHHHHHHHHHHcCCeEEEeCcc
Q psy5413         172 V---LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL-PMQWLRELKARCQEHNIPVHMDGAR  247 (285)
Q Consensus       172 ~---~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~-~~~~l~~i~~la~~~gi~li~Dea~  247 (285)
                      .   .+..++.     .|++.+++.+..      .++++|++++.++.+ |.+. +.+++++|+++|++||+++|+||+|
T Consensus       163 ~~~~~~~~~~~-----~d~~~l~~~~~~------~~~aavi~eP~~~~g-g~~~~~~~~l~~l~~l~~~~g~llI~DEv~  230 (408)
T PRK04612        163 PLPGGFRYVDF-----NDVEALEAAMAG------GDVAAVMLEPIQGEG-GVMPAAPGFLARVRALCDQHDALLVLDEIQ  230 (408)
T ss_pred             CCCCCceEcCC-----CCHHHHHHhhCC------CCEEEEEECCccCCC-CCcCCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence            1   1111221     288999988853      278999999988765 5554 4689999999999999999999998


Q ss_pred             CChh-----hhcccCCe--EEEecccccCc--ceeEEeecCcccc
Q psy5413         248 LPLA-----EVCASVDT--VMFCLSKGLGA--PVGSILAGPEEFI  283 (285)
Q Consensus       248 ~~~~-----~~~~~~dv--~~~s~sK~l~~--p~gg~~~~~~~~i  283 (285)
                      +++.     ......++  -+.+++|.+++  |+|+++++ ++++
T Consensus       231 tg~gr~G~~~a~~~~~~~pdi~t~~K~l~~G~piga~~~~-~~~~  274 (408)
T PRK04612        231 CGMGRTGTLFAHWQEQVTPDIVTLAKALGGGFPIGAMLAG-PKVA  274 (408)
T ss_pred             cCCCcCCchhhhhhcCCCCCEEEEcchhcCCCceEEEEEC-HHHH
Confidence            8431     11122233  37888999987  78876655 4443

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.85  E-value=2.9e-20  Score=168.81  Aligned_cols=162  Identities=15%  Similarity=0.183  Sum_probs=130.5

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|...+|++.+++++|.+.++.+++|+.|+..++.+.+ ++||+|+++++.|..+.... ...      ...|.+++.+
T Consensus        63 ~~p~~~~Le~~lA~l~G~~~~~~~~sG~~Ai~~~l~~~l-~~Gd~Vl~~~~~y~~~~~~~~~~~------~~~G~~v~~v  135 (398)
T PRK07504         63 SNPTVDMFEKRMCALEGAEDARATASGMAAVTAAILCQV-KAGDHVVAARALFGSCRYVVETLL------PRYGIESTLV  135 (398)
T ss_pred             CCchHHHHHHHHHHHhCCCeeeEecCHHHHHHHHHHHHh-CCCCEEEEcCCchhHHHHHHHHHH------hhcCeEEEEE
Confidence            467899999999999999988889999999998887766 69999999876654332110 111      2347777766


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC-h--hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP-L--AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~-~--~~~~  254 (285)
                      +     ..|+++++++|++       ++++|++++|+||+ |.+.|   +++|.++|+++|+++|+|++|.. .  ....
T Consensus       136 d-----~~d~e~l~~ai~~-------~tklV~lesp~Npt-G~v~d---l~~I~~la~~~gi~lvvD~a~a~~~~~~~~~  199 (398)
T PRK07504        136 D-----GLDLDNWEKAVRP-------NTKVFFLESPTNPT-LEVID---IAAVAKIANQAGAKLVVDNVFATPLFQKPLE  199 (398)
T ss_pred             C-----CCCHHHHHHhcCc-------CceEEEEECCCCCC-cEecC---HHHHHHHHHHcCCEEEEECCccccccCCchh
Confidence            4     2589999999987       89999999999999 89999   99999999999999999999872 1  1223


Q ss_pred             ccCCeEEEecccccCc---ceeEEeecCcccc
Q psy5413         255 ASVDTVMFCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                      .++|+++.|++|++++   ..||+++++++++
T Consensus       200 ~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i  231 (398)
T PRK07504        200 LGAHIVVYSATKHIDGQGRCLGGVVLSDKAWI  231 (398)
T ss_pred             hCCCEEEeeccccccCCccceEEEEEeCcHHH
Confidence            4789999999999987   4788898887765

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.85  E-value=2.1e-20  Score=172.40  Aligned_cols=235  Identities=14%  Similarity=0.113  Sum_probs=151.8

Q ss_pred             CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC-C---CCccCCh
Q psy5413          26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG-D---DVYLEDP  101 (285)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~-~---~~y~~~~  101 (285)
                      .|..+.++.+.+.|+..++.+++.++.|+.-                  +.++.+|+|.+++.+++.. .   ..+..++
T Consensus        40 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGH~~p~v~~Ai~~q~~~~~~~~~~~~~~~  101 (459)
T PRK06931         40 LPLAIAKAQGVWVTDVEGNQYLDCLAGAGTL------------------ALGHNHPDVLQSIQDVLTSGLPLHTLDLTTP  101 (459)
T ss_pred             CCceEEeccccEEEeCCCCEEEEcccchhhc------------------cCCCCCHHHHHHHHHHHhhhccccccccCCH
Confidence            3666777888888886655555554444432                  3478999999999988753 1   1112466


Q ss_pred             hHHHHHHHHHhHcCCC----cE-EEcCChHHHHHHHHHHccccCCCe-EE-ecCCcceeeeccccccccccccc-----c
Q psy5413         102 TCKELQEKAAKLAGKE----AA-IFVPSGTMGNLIAIMTHCDRRDSE-II-VGDCSHIMLWEQGGASQTSVYSQ-----I  169 (285)
Q Consensus       102 ~~~~l~~~la~~~g~~----~~-~~~~~Gs~a~~~al~~~~~~~g~~-vi-~~~~~h~~~~~~~~~~~~~~~~~-----~  169 (285)
                      ...++.+.+++.+...    .. ++++|||+|++.|++++...+|+. |+ ....||+.+.....+.....+..     .
T Consensus       102 ~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~  181 (459)
T PRK06931        102 LKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLM  181 (459)
T ss_pred             HHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCC
Confidence            7888999999887421    23 566999999999999988666654 33 35788988754333221111111     1


Q ss_pred             cceeeeeeecCCC---C---CCCHHHHHHHhcccc---cccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCe
Q psy5413         170 GRVLMRGVTNQKD---G---TFDLDEMEAKFSTAD---NIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIP  240 (285)
Q Consensus       170 ~g~~~~~~~~~~~---~---~~d~~~l~~~i~~~~---~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~  240 (285)
                      .+...++.|....   +   ..+.+.+++.+++..   ..+.+++++|++|+.++..|..+.|.+++++++++|++||++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~L  261 (459)
T PRK06931        182 PGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGIL  261 (459)
T ss_pred             CCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence            1222222221100   0   113344433322211   112347999999999998855667899999999999999999


Q ss_pred             EEEeCccCCh-----hhhcccCCeE--EEecccccCc--ceeEEeec
Q psy5413         241 VHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA--PVGSILAG  278 (285)
Q Consensus       241 li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~--p~gg~~~~  278 (285)
                      +|+||+++++     ....++.++.  +.+++|.+++  |+++++..
T Consensus       262 lI~DEV~tGfGRtG~~~a~~~~gv~PDivt~gK~l~gG~Pi~av~~~  308 (459)
T PRK06931        262 LIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSKAVGGGLPLAVLGIK  308 (459)
T ss_pred             EEEecchhcCCcCchHHHhhhcCCCCCEEEecccccCCcceeeeeeH
Confidence            9999998843     3444555655  7777899988  88875544

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.85  E-value=2.9e-20  Score=169.21  Aligned_cols=203  Identities=17%  Similarity=0.131  Sum_probs=146.1

Q ss_pred             CeeeeeccCCcCCCcHHHHHHHHhcccCCCCccC---------ChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHH
Q psy5413          66 IRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLE---------DPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        66 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~---------~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~  134 (285)
                      ..++++..+++++++|.+..+...+......|..         .+...++++.+++++|.+  .++++++|+++.+.++.
T Consensus        20 ~~~~~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~   99 (398)
T cd00613          20 QSMSFLGSGTYKHNPPAVIKRNILENEFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGL   99 (398)
T ss_pred             cCcccccccccCCcCcHHHHHHhccccCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHH
Confidence            4557888899999999887776554422223332         123567788888888876  56677777766666655


Q ss_pred             HccccC--CCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         135 THCDRR--DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       135 ~~~~~~--g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      ++...+  |++|++++++|..+.......     ....|.+++.++.++++.+|++++++++.+       ++++|++++
T Consensus       100 ~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~-----~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-------~t~~viv~~  167 (398)
T cd00613         100 AAIRAYHKRNKVLVPDSAHPTNPAVARTR-----GEPLGIEVVEVPSDEGGTVDLEALKEEVSE-------EVAALMVQY  167 (398)
T ss_pred             HHHhcccCCCEEEEcCccCcchHHHHHHh-----cccCCcEEEEeccCCCCCcCHHHHHHhcCC-------CeEEEEEEC
Confidence            554445  899999999998764422222     012347788888766667899999999977       799999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC-hh---hhcccCCeEEEeccccc-----CcceeEEeecCcccc
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP-LA---EVCASVDTVMFCLSKGL-----GAPVGSILAGPEEFI  283 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~-~~---~~~~~~dv~~~s~sK~l-----~~p~gg~~~~~~~~i  283 (285)
                      ++ ++ |.+.+  +|++|+++|++||+++|+|+++.. ..   ....++|+++.++|||+     |+|.+|+++.+++++
T Consensus       168 ~~-~~-G~~~~--~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~~~~  243 (398)
T cd00613         168 PN-TL-GVFED--LIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTGVPHGGGGPGAGFFAVKKELV  243 (398)
T ss_pred             CC-CC-ceecc--hHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEeeccccCCCCCCCCCceeEEEEhhhhH
Confidence            86 66 77754  369999999999999999998762 11   12347899999999998     237788998887665


Q ss_pred             c
Q psy5413         284 Q  284 (285)
Q Consensus       284 ~  284 (285)
                      +
T Consensus       244 ~  244 (398)
T cd00613         244 R  244 (398)
T ss_pred             h
Confidence            4

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK07777 aminotransferase; Validated

Probab=99.85  E-value=3.1e-20  Score=168.53  Aligned_cols=200  Identities=19%  Similarity=0.157  Sum_probs=149.2

Q ss_pred             eeeeeccCCcCCC-cHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhH----cCCC-----cEEEcCChHHHHHHHHHH
Q psy5413          67 RTVDIRSDTISKP-TMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKL----AGKE-----AAIFVPSGTMGNLIAIMT  135 (285)
Q Consensus        67 ~~~~~~~~~~~~~-~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~----~g~~-----~~~~~~~Gs~a~~~al~~  135 (285)
                      ++++|..+.+... ++.+.+++.+.... ...|.......++++.++++    +|.+     .+++++||++|+..++.+
T Consensus        25 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~  104 (387)
T PRK07777         25 GAVNLGQGFPDEDGPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLG  104 (387)
T ss_pred             CeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHH
Confidence            5688888776653 34667766654442 34576666788899988876    3532     478999999999999988


Q ss_pred             ccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC---CCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         136 HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD---GTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       136 ~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      ++ .+||+|++..++|.....   ..      ...|.+++.++..++   +.+|++++++++.+       ++++|++++
T Consensus       105 ~~-~~gd~vli~~p~y~~~~~---~~------~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~v~l~~  167 (387)
T PRK07777        105 LV-EPGDEVLLIEPYYDSYAA---VI------AMAGAHRVPVPLVPDGRGFALDLDALRAAVTP-------RTRALIVNS  167 (387)
T ss_pred             hc-CCCCEEEEeCCCchhhHH---HH------HHCCCEEEEeecCCccCCCcCCHHHHHHhcCc-------ccEEEEEcC
Confidence            76 589999988877654432   11      234777777776433   45899999999876       789999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc-----ccCCeEEEecccccCc--ceeEEeec
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC-----ASVDTVMFCLSKGLGA--PVGSILAG  278 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~-----~~~dv~~~s~sK~l~~--p~gg~~~~  278 (285)
                      |+||| |.+++.+++++|+++|++||+++|+||+|..+.       .+.     ...++++.|+||.++.  .+.|+++.
T Consensus       168 p~NPt-G~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~  246 (387)
T PRK07777        168 PHNPT-GTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACG  246 (387)
T ss_pred             CCCCC-CccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEec
Confidence            99999 899999999999999999999999999986211       111     1234669999999874  56688888


Q ss_pred             Cccccc
Q psy5413         279 PEEFIQ  284 (285)
Q Consensus       279 ~~~~i~  284 (285)
                      ++++++
T Consensus       247 ~~~l~~  252 (387)
T PRK07777        247 PAPLIA  252 (387)
T ss_pred             CHHHHH
Confidence            877653

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.85  E-value=2.3e-20  Score=168.40  Aligned_cols=197  Identities=21%  Similarity=0.236  Sum_probs=149.8

Q ss_pred             eccCCcCCCcHHHHHHHHhcccCC-----C-Ccc----CChhHHHHHHHHHhHcCCC---cEEEcCChHHHHHHHHHHcc
Q psy5413          71 IRSDTISKPTMEMKNYMFNCEVGD-----D-VYL----EDPTCKELQEKAAKLAGKE---AAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        71 ~~~~~~~~~~~~v~~a~~~~~~~~-----~-~y~----~~~~~~~l~~~la~~~g~~---~~~~~~~Gs~a~~~al~~~~  137 (285)
                      |.+.....+++.+.+++.+.....     . .+.    ......++++.+++++|.+   .+++++|+++++..++.++.
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~   82 (373)
T cd06453           3 LDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLG   82 (373)
T ss_pred             ccCccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhh
Confidence            444555667788888887665321     1 111    1234678999999999876   56899999999999998876


Q ss_pred             cc--CCCeEEecCCcceeeecc-cccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         138 DR--RDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       138 ~~--~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      ..  +|++|++++..|.+.... ....      ...|.+++.++.++++.+|++++++++.+       ++++|++++++
T Consensus        83 ~~~~~g~~vl~~~~~~~~~~~~~~~~~------~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-------~~~~v~~~~~~  149 (373)
T cd06453          83 RANKPGDEIVTSVMEHHSNIVPWQQLA------ERTGAKLKVVPVDDDGQLDLEALEKLLTE-------RTKLVAVTHVS  149 (373)
T ss_pred             hcCCCCCEEEECcchhHHHHHHHHHHH------hhcCcEEEEeecCCCCCcCHHHHHHHhcC-------CceEEEEeCcc
Confidence            43  788999988887653211 1111      24588888888877778999999999987       78999999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh---hhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA---EVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~---~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      |++ |.+.|   +++|.++|++||+++|+|+++. +..   ....++|+++++++|+++++..|+++.++++++
T Consensus       150 ~~t-G~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~g~g~~~~~~~~~~  219 (373)
T cd06453         150 NVL-GTINP---VKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLE  219 (373)
T ss_pred             ccc-CCcCC---HHHHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEeccccccCCCCcEEEEEchHHhh
Confidence            999 99999   8999999999999999999987 211   112478999999999999865688888777654

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK07550 hypothetical protein; Provisional

Probab=99.85  E-value=2.6e-20  Score=168.94  Aligned_cols=202  Identities=16%  Similarity=0.104  Sum_probs=152.6

Q ss_pred             CCeeeeeccCCcCCC-cHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcC----C----CcEEEcCChHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISKP-TMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAG----K----EAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g----~----~~~~~~~~Gs~a~~~al  133 (285)
                      +...++|..+.+... .+.+.+++.+....  ...|.......+|++.++++++    .    +.+++++|+++|+..++
T Consensus        28 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~  107 (386)
T PRK07550         28 DGPLIDLSQAVPGYPPPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAM  107 (386)
T ss_pred             CCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHH
Confidence            456799998887664 66888887765432  2356655678888888888864    1    34578888899999999


Q ss_pred             HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413         134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVE  211 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~  211 (285)
                      .+++ ++||.|+++.++|.....   ..      ...|.+++.++.++  .+.+|++++++++++       ++++|+++
T Consensus       108 ~~l~-~~gd~Vlv~~p~y~~~~~---~~------~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~-------~~~~v~~~  170 (386)
T PRK07550        108 VTLA-GAGDEVILPLPWYFNHKM---WL------DMLGIRPVYLPCDEGPGLLPDPAAAEALITP-------RTRAIALV  170 (386)
T ss_pred             HHhc-CCCCEEEEcCCCCcchHH---HH------HhcCCEEEEEecCCCcCCCCCHHHHHHHhcc-------cCcEEEEe
Confidence            8887 689999998887644322   22      34588998888753  345799999999977       78899999


Q ss_pred             cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhcc----cCCeE-EEecccccC--cceeEEee
Q psy5413         212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVCA----SVDTV-MFCLSKGLG--APVGSILA  277 (285)
Q Consensus       212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~~----~~dv~-~~s~sK~l~--~p~gg~~~  277 (285)
                      +|+||| |.+++.+++++|+++|++||+++|+||+|..+.       ....    +.+++ +.|+||.++  |.+.|+++
T Consensus       171 ~P~NPt-G~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~  249 (386)
T PRK07550        171 TPNNPT-GVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVV  249 (386)
T ss_pred             CCCCCC-CcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeee
Confidence            999999 899999999999999999999999999986221       1111    12244 899999987  46778888


Q ss_pred             cCccccc
Q psy5413         278 GPEEFIQ  284 (285)
Q Consensus       278 ~~~~~i~  284 (285)
                      +++++++
T Consensus       250 ~~~~~~~  256 (386)
T PRK07550        250 ASPARIA  256 (386)
T ss_pred             cCHHHHH
Confidence            8777654

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.85  E-value=1.7e-20  Score=172.81  Aligned_cols=217  Identities=14%  Similarity=0.079  Sum_probs=140.0

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCC----CCccCChhHHHHHHHHHhHcCC--CcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD----DVYLEDPTCKELQEKAAKLAGK--EAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~----~~y~~~~~~~~l~~~la~~~g~--~~~~~~~~Gs~a~~~al~  134 (285)
                      |++++||.++    +.++.+|+|.+|+.+++...    ..+..++...+|.++|++..+.  +.++|++|||+|++.|++
T Consensus        52 G~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~Alk  131 (457)
T PRK05639         52 GNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIK  131 (457)
T ss_pred             CCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHH
Confidence            5566666544    45779999999999887631    1233456678899999998753  578999999999999999


Q ss_pred             HccccCCCe-EEe-cCCcceeeeccccccc-ccccccccce---eeeeeecCCCCC--------CCHH--------HHHH
Q psy5413         135 THCDRRDSE-IIV-GDCSHIMLWEQGGASQ-TSVYSQIGRV---LMRGVTNQKDGT--------FDLD--------EMEA  192 (285)
Q Consensus       135 ~~~~~~g~~-vi~-~~~~h~~~~~~~~~~~-~~~~~~~~g~---~~~~~~~~~~~~--------~d~~--------~l~~  192 (285)
                      ++...+|+. |+. ...||+.+..+..+.. ...+...++.   .+..+|.+....        .+.+        .+++
T Consensus       132 lAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~  211 (457)
T PRK05639        132 VSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLEN  211 (457)
T ss_pred             HHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHH
Confidence            998666654 333 5788987754332221 0111111111   223333321100        1222        3444


Q ss_pred             HhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE--EEecc
Q psy5413         193 KFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV--MFCLS  265 (285)
Q Consensus       193 ~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~s  265 (285)
                      .+.. ...+.+++++|++|+.++..|..+.|.+++++|+++|++||+++|+||+++++     ....++.++.  +.+++
T Consensus       212 ~l~~-~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~g  290 (457)
T PRK05639        212 YVFS-HVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFG  290 (457)
T ss_pred             HHHH-hhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEEec
Confidence            4421 01123489999999999987555678999999999999999999999998843     2233333333  45578


Q ss_pred             cccCc--ceeEEeecCcccc
Q psy5413         266 KGLGA--PVGSILAGPEEFI  283 (285)
Q Consensus       266 K~l~~--p~gg~~~~~~~~i  283 (285)
                      |++++  |+|+++. +++++
T Consensus       291 K~l~gG~pi~av~~-~~~i~  309 (457)
T PRK05639        291 KGVASGMGLSGVIG-RKELM  309 (457)
T ss_pred             hhhcCCCcceeEEe-hHHHH
Confidence            99986  7776654 45443

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.85  E-value=2.2e-20  Score=170.88  Aligned_cols=237  Identities=16%  Similarity=0.147  Sum_probs=152.6

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC--CCc--cCChh
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD--DVY--LEDPT  102 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~y--~~~~~  102 (285)
                      |..++++.+.+.|+..++.+++.+..++.                  .+.++.||++.+++.+++...  ..+  ..++.
T Consensus        23 p~~~~~~~G~~l~D~dG~~ylD~~~g~~~------------------~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~   84 (421)
T PRK06777         23 DFYAERAENATLWDVEGREYIDFAAGIAV------------------LNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYAS   84 (421)
T ss_pred             CeeEEeeecCEEEeCCCCEEEEcccCHHh------------------hccCCCCHHHHHHHHHHHhhcccccccccCChH
Confidence            45566677777777554444333333322                  134789999999999887642  222  24566


Q ss_pred             HHHHHHHHHhHcC---CCcEEEcCChHHHHHHHHHHccccCCCe-EE-ecCCcceeeecccccccc-cccccccce---e
Q psy5413         103 CKELQEKAAKLAG---KEAAIFVPSGTMGNLIAIMTHCDRRDSE-II-VGDCSHIMLWEQGGASQT-SVYSQIGRV---L  173 (285)
Q Consensus       103 ~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi-~~~~~h~~~~~~~~~~~~-~~~~~~~g~---~  173 (285)
                      ..++.++++++..   .+.++|++|||+|++.|++++...+|+. |+ ....||+.+.....+... ..+...++.   .
T Consensus        85 ~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~  164 (421)
T PRK06777         85 YVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGS  164 (421)
T ss_pred             HHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCC
Confidence            7889999998864   3578999999999999999988666664 33 357889887543322210 112111111   1


Q ss_pred             eeeeecCCCC-----CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413         174 MRGVTNQKDG-----TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL  248 (285)
Q Consensus       174 ~~~~~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~  248 (285)
                      +..++.+...     ..+++.+++.+++.  .+.+++++|++|++++.+|..+.|.+++++|+++|++||+++|+||+|+
T Consensus       165 ~~~~~~p~~~~~~~~~~~~~~l~~~~~~~--~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t  242 (421)
T PRK06777        165 IFHALYPNELHGVSVEEALSSVERLFKAD--IAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQT  242 (421)
T ss_pred             cEEcCCCccccCcCHHHHHHHHHHHHHhc--cCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence            2222221111     12466778777531  1234799999999999885567899999999999999999999999988


Q ss_pred             Chh-----hhcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413         249 PLA-----EVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       249 ~~~-----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      ++.     ......++.  +.+++|.+++  |+|+ +++++++++
T Consensus       243 g~gr~g~~~~~~~~~~~pDiv~~sK~l~~G~piga-v~~~~~i~~  286 (421)
T PRK06777        243 GFARTGKLFAMEYYDVKPDLITMAKSLGGGMPISA-VVGRAEVMD  286 (421)
T ss_pred             CCccCCchhhhhhcCCCCCEEeeehhhcCCCceEE-EEEcHHHHh
Confidence            431     122233322  5578999976  6555 555566543

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.85  E-value=1.8e-20  Score=172.37  Aligned_cols=237  Identities=14%  Similarity=0.116  Sum_probs=152.5

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC----CccCChh
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD----VYLEDPT  102 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~----~y~~~~~  102 (285)
                      |..+.++.+.+.|+..++.+++.+..++..                  +.++.||+|.+|+.+++....    .+..++.
T Consensus        25 p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGH~~p~v~~Ai~~ql~~~~~~~~~~~~~~~   86 (445)
T PRK08593         25 PLVIDHGYGATLTDVDGKTYIDLLASASSQ------------------NVGHAPPRVVEAIKAQADKFIHYTPAYMYHEP   86 (445)
T ss_pred             CceEEeeeeCEEEeCCCCEEEECCccHHhh------------------cCCCCCHHHHHHHHHHHHhccCccccccCCHH
Confidence            566777888888876555444444433321                  447899999999998876321    2234677


Q ss_pred             HHHHHHHHHhHcCC---CcEEEcCChHHHHHHHHHHccccCCCe-EE-ecCCcceeeeccccccc-ccccccccc---ee
Q psy5413         103 CKELQEKAAKLAGK---EAAIFVPSGTMGNLIAIMTHCDRRDSE-II-VGDCSHIMLWEQGGASQ-TSVYSQIGR---VL  173 (285)
Q Consensus       103 ~~~l~~~la~~~g~---~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi-~~~~~h~~~~~~~~~~~-~~~~~~~~g---~~  173 (285)
                      ..++.++|++++..   ++++|++|||+|++.|++++...+|+. |+ ....||+.+.....++. ...+...++   ..
T Consensus        87 ~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~  166 (445)
T PRK08593         87 LVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPG  166 (445)
T ss_pred             HHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCC
Confidence            89999999998742   468999999999999999987656654 33 36788988754332221 011111111   11


Q ss_pred             eeeeecCCC-----CCCC-------HHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeE
Q psy5413         174 MRGVTNQKD-----GTFD-------LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPV  241 (285)
Q Consensus       174 ~~~~~~~~~-----~~~d-------~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~l  241 (285)
                      +..+|.++.     ...+       ++++++.+...  .+.+++++|++|++++.+|....|.+++++|+++|++||+++
T Consensus       167 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~ll  244 (445)
T PRK08593        167 FVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKY--LPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILF  244 (445)
T ss_pred             cEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhh--cCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence            222332111     0111       23444444321  012479999999999987555688999999999999999999


Q ss_pred             EEeCccCCh-----hhhcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413         242 HMDGARLPL-----AEVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       242 i~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      |+||+++++     ....++.++.  +.+++|.+++  |.|+ +++++++++
T Consensus       245 I~DEv~tg~GrtG~~~a~~~~gv~pDi~t~gK~l~~G~p~ga-v~~~~~i~~  295 (445)
T PRK08593        245 AVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAGGMPMSA-IVGRKEIME  295 (445)
T ss_pred             EEechhhCCCcCchHHHHHhcCCCCCEeeecccccCCcccEE-EEEcHHHHh
Confidence            999998733     2223333433  6678899986  6665 555666553

>KOG0259|consensus

Probab=99.85  E-value=5.3e-20  Score=158.20  Aligned_cols=194  Identities=16%  Similarity=0.139  Sum_probs=154.7

Q ss_pred             CeeeeeccCCcCC-----CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHHH
Q psy5413          66 IRTVDIRSDTISK-----PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGNL  130 (285)
Q Consensus        66 ~~~~~~~~~~~~~-----~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~~  130 (285)
                      ++++.+..+.|+.     ..+++.+|+.+....  .+.|++..+....|+.+|+++.        .+.++++.+.++|++
T Consensus        61 k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe  140 (447)
T KOG0259|consen   61 KPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIE  140 (447)
T ss_pred             ceeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHH
Confidence            5788888877775     577888888877663  5789999999999999999953        244688889999999


Q ss_pred             HHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeec--CCCCCCCHHHHHHHhcccccccCCceEEE
Q psy5413         131 IAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN--QKDGTFDLDEMEAKFSTADNIHCASTSLV  208 (285)
Q Consensus       131 ~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~i~~~~~~~~~~~~~v  208 (285)
                      .++.++. ++|.+|+++.+.+.....   .+      ...+.+++.+..  ..++.+|++.+|+.+++       +|.++
T Consensus       141 ~~i~~LA-~p~aNILlPrPGfp~Y~~---~a------~~~~lEVR~ydlLPe~~weIDL~~veal~DE-------NT~Ai  203 (447)
T KOG0259|consen  141 LAISSLA-NPGANILLPRPGFPLYDT---RA------IYSGLEVRYYDLLPEKDWEIDLDGVEALADE-------NTVAI  203 (447)
T ss_pred             HHHHHhc-CCCCceecCCCCCchHHH---hh------hhcCceeEeecccCcccceechHHHHHhhcc-------CeeEE
Confidence            9999987 699999998877544332   22      233667666553  34678999999999999       89999


Q ss_pred             EEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----------ChhhhcccCCeE-EEecccccCc--ceeEE
Q psy5413         209 CVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL----------PLAEVCASVDTV-MFCLSKGLGA--PVGSI  275 (285)
Q Consensus       209 ~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~----------~~~~~~~~~dv~-~~s~sK~l~~--p~gg~  275 (285)
                      ++.+|+||+ |.+++.+-|++|+++|+++|+++|.||+|.          ++..+...+.|+ +.+.||.+-.  ++-|+
T Consensus       204 vviNP~NPc-GnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGW  282 (447)
T KOG0259|consen  204 VVINPNNPC-GNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGW  282 (447)
T ss_pred             EEeCCCCCC-cccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCceeee
Confidence            999999999 999999999999999999999999999977          344455667777 8999995433  55555


Q ss_pred             ee
Q psy5413         276 LA  277 (285)
Q Consensus       276 ~~  277 (285)
                      ++
T Consensus       283 i~  284 (447)
T KOG0259|consen  283 IA  284 (447)
T ss_pred             EE
Confidence            54

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.85  E-value=3.2e-20  Score=168.68  Aligned_cols=162  Identities=17%  Similarity=0.178  Sum_probs=132.4

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|...+|++.++++.|.+.+++++||+.|+..++.+++ ++||+|+++...|..++... ...      ...|.+++.+
T Consensus        68 ~~p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all-~~Gd~Vl~~~~~~~~t~~~~~~~~------~~~G~~v~~v  140 (403)
T PRK07810         68 GNPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALL-GAGDRLVAARSLFGSCFVVCNEIL------PRWGVETVFV  140 (403)
T ss_pred             CCchHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHh-CCCCEEEEccCCcchHHHHHHHHH------HHcCcEEEEE
Confidence            567799999999999999999999999999999998876 68999998875554332211 111      3457888777


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~  254 (285)
                      +.     .|++++++++++       ++++|++++|+||+ |.+.|   +++|+++|+++|+++|+|+++...   ..+.
T Consensus       141 d~-----~d~~~l~~ai~~-------~tklV~~esp~Npt-g~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~~~~~  204 (403)
T PRK07810        141 DG-----EDLSQWEEALSV-------PTQAVFFETPSNPM-QSLVD---IAAVSELAHAAGAKVVLDNVFATPLLQRGLP  204 (403)
T ss_pred             CC-----CCHHHHHHhcCc-------CceEEEEECCCCCC-CeecC---HHHHHHHHHHcCCEEEEECCCCccccCChhh
Confidence            64     389999999987       79999999999999 89999   999999999999999999998822   1334


Q ss_pred             ccCCeEEEecccccCc---ceeEEeecCcccc
Q psy5413         255 ASVDTVMFCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                      .++|+++.|++|++++   .+||+++++++.+
T Consensus       205 ~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~  236 (403)
T PRK07810        205 LGADVVVYSGTKHIDGQGRVLGGAILGDREYI  236 (403)
T ss_pred             cCCcEEEccCCceecCCcCceeEEEEeChHHH
Confidence            5789999999999987   4578888877654

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.85  E-value=2.3e-20  Score=167.36  Aligned_cols=198  Identities=22%  Similarity=0.256  Sum_probs=149.6

Q ss_pred             cCCeeeeeccCCcCC--CcHHHHHHHHhcccC-CC-------CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHH
Q psy5413          64 VNIRTVDIRSDTISK--PTMEMKNYMFNCEVG-DD-------VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        64 ~~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~-~~-------~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al  133 (285)
                      .|++++||.++++.+  .+|++++++.+.... ..       .++..+...++++.++++++.+..+++++|++++..++
T Consensus        14 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~G~~~~~~~l   93 (360)
T TIGR00858        14 DGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEAALLFSSGYLANVGVI   93 (360)
T ss_pred             CCceEEecccCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCCEEEECchHHHHHHHH
Confidence            478999999887533  568999998876642 11       13344668889999999999888888899999999888


Q ss_pred             HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      .+++ ++||+|++.+++|........         ..|.+++.++.     +|++++++.+++..   ..++++|+++++
T Consensus        94 ~~~~-~~gd~v~~~~~~~~~~~~~~~---------~~g~~~~~~~~-----~d~~~l~~~~~~~~---~~~~~~v~~~~~  155 (360)
T TIGR00858        94 SALV-GKGDLILSDALNHASLIDGCR---------LSGARVRRYRH-----NDVEHLERLLEKNR---GERRKLIVTDGV  155 (360)
T ss_pred             HHhC-CCCCEEEEEccccHHHHHHHH---------hcCCceEEecC-----CCHHHHHHHHHHcc---cCCCeEEEEeCC
Confidence            8776 689999998888866543222         23666666553     48899999986521   025789999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh--------hh----cccCCeEEEecccccCcceeEEeecCc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA--------EV----CASVDTVMFCLSKGLGAPVGSILAGPE  280 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~--------~~----~~~~dv~~~s~sK~l~~p~gg~~~~~~  280 (285)
                      +|++ |...+   +++|.++|+++|+++|+||+|+ +..        ..    ....++++.|+||++++ .||++++++
T Consensus       156 ~~~~-G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~-~gG~~~~~~  230 (360)
T TIGR00858       156 FSMD-GDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGS-YGAYVAGSQ  230 (360)
T ss_pred             ccCC-CCCcC---HHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhc-cCcEEEcCH
Confidence            9998 88889   9999999999999999999986 111        11    12456779999999987 668888887


Q ss_pred             cccc
Q psy5413         281 EFIQ  284 (285)
Q Consensus       281 ~~i~  284 (285)
                      ++++
T Consensus       231 ~~~~  234 (360)
T TIGR00858       231 ALID  234 (360)
T ss_pred             HHHH
Confidence            7653

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.85  E-value=3e-20  Score=168.92  Aligned_cols=165  Identities=21%  Similarity=0.247  Sum_probs=134.6

Q ss_pred             cc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-cccccccccccccee
Q psy5413          97 YL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVL  173 (285)
Q Consensus        97 y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~  173 (285)
                      |.  ++|...+|++.++++.|.+.+++++||++|+..++.+++ ++||+|+++++.|..+.... ...      ...|.+
T Consensus        58 Y~r~~~p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll-~~Gd~Vl~~~~~y~~~~~~~~~~~------~~~G~~  130 (400)
T PRK06234         58 YSRLGNPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSAL-KAGDHVVASDTLYGCTFALLNHGL------TRYGVE  130 (400)
T ss_pred             ccCCCCccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHh-CCCCEEEEecCccchHHHHHHHHH------hhCCeE
Confidence            55  678899999999999999889999999999999998876 69999999888775543211 011      245888


Q ss_pred             eeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc--CCeEEEeCccCChh
Q psy5413         174 MRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH--NIPVHMDGARLPLA  251 (285)
Q Consensus       174 ~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~--gi~li~Dea~~~~~  251 (285)
                      ++.++..     |++++++++++       ++++|++++|+||+ |.+.|   +++|.++|+++  |+++++|+++....
T Consensus       131 v~~vd~~-----d~e~l~~~i~~-------~tklI~iesP~NPt-G~v~d---l~~I~~la~~~~~~i~livDea~~~~~  194 (400)
T PRK06234        131 VTFVDTS-----NLEEVRNALKA-------NTKVVYLETPANPT-LKVTD---IKAISNIAHENNKECLVFVDNTFCTPY  194 (400)
T ss_pred             EEEECCC-----CHHHHHHHhcc-------CCeEEEEECCCCCC-CCcCC---HHHHHHHHHhcCCCCEEEEECCCCchh
Confidence            8877652     89999999987       78999999999999 89999   99999999997  99999999987321


Q ss_pred             ---hhcccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413         252 ---EVCASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ  284 (285)
Q Consensus       252 ---~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~  284 (285)
                         .+..++|+++.|++|++++   .+||++++++++++
T Consensus       195 ~~~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~  233 (400)
T PRK06234        195 IQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFIN  233 (400)
T ss_pred             cCCchhhCCcEEEeeccccccCCCCceeEEEEecHHHHH
Confidence               2234789999999999987   35788988877654

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.85  E-value=2.5e-20  Score=169.00  Aligned_cols=163  Identities=15%  Similarity=0.164  Sum_probs=130.7

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|...+|++.++++.|.+.+++++||++|+..++.+++ ++||+|+++++.|..+.... ...      ...|++++.+
T Consensus        63 ~~pt~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al~-~~GD~Vl~~~~~y~~~~~~~~~~~------~~~Gi~v~~v  135 (394)
T PRK07050         63 ATPTSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLV-KAGDDVLIPDNAYGPNRDHGEWLA------RDFGITVRFY  135 (394)
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHh-CCCCEEEEecCCcccHHHHHHHHH------HhcCeEEEEE
Confidence            678899999999999999999999999999999999887 69999999988876554311 122      3458887777


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC---hhhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP---LAEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~---~~~~~  254 (285)
                      +..     +.++++++|++       ++++|++++|+|++ +.+.+   +++|+++|+++|+++|+|++|..   ...+.
T Consensus       136 d~~-----~~~~l~~~i~~-------~tklV~le~p~Np~-~~~~d---i~~I~~ia~~~gi~livD~a~a~~~~~~~l~  199 (394)
T PRK07050        136 DPL-----IGAGIADLIQP-------NTRLIWLEAPGSVT-MEVPD---VPAITAAARARGVVTAIDNTYSAGLAFKPFE  199 (394)
T ss_pred             CCC-----CHHHHHHhcCC-------CCeEEEEECCCCCC-ccHhh---HHHHHHHHHHcCCEEEEECCcccccccCHHH
Confidence            542     45788988877       89999999999998 77776   99999999999999999999872   23344


Q ss_pred             ccCCeEEEecccccCc----ceeEEeecCccccc
Q psy5413         255 ASVDTVMFCLSKGLGA----PVGSILAGPEEFIQ  284 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~----p~gg~~~~~~~~i~  284 (285)
                      .++|+++.|++|++++    +.|+++++++++++
T Consensus       200 ~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~  233 (394)
T PRK07050        200 HGVDISVQALTKYQSGGSDVLMGATITADAELHA  233 (394)
T ss_pred             cCCeEEEEECCceecCCCCeeEEEEEECCHHHHH
Confidence            5789999999999976    34445556666654

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.85  E-value=2.1e-20  Score=171.75  Aligned_cols=214  Identities=17%  Similarity=0.175  Sum_probs=140.3

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCC---CCc-cCChhHHHHHHHHHhHc--CCCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD---DVY-LEDPTCKELQEKAAKLA--GKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~---~~y-~~~~~~~~l~~~la~~~--g~~~~~~~~~Gs~a~~~al~  134 (285)
                      |++++||.++    +.++.+|++.+|+.+++...   ..+ ..++...++.++|+++.  +.+.++|++|||+|++.|++
T Consensus        45 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk  124 (442)
T PRK13360         45 GRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGGLNHVFFTNSGSESVDTALK  124 (442)
T ss_pred             CCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHH
Confidence            4555565433    34789999999999887631   122 24677889999999986  35678999999999999999


Q ss_pred             Hcccc------CCC-eEEe-cCCcceeeecccccccccccccccc---eeeeeeecCCC-----CC--------CCHHHH
Q psy5413         135 THCDR------RDS-EIIV-GDCSHIMLWEQGGASQTSVYSQIGR---VLMRGVTNQKD-----GT--------FDLDEM  190 (285)
Q Consensus       135 ~~~~~------~g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~-----~~--------~d~~~l  190 (285)
                      ++...      +++ +||. ...||+.+.....+.....+...++   ..+..+|...+     ..        .+++++
T Consensus       125 lAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l  204 (442)
T PRK13360        125 IALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADEL  204 (442)
T ss_pred             HHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHH
Confidence            98742      122 3544 6788987643222221111211111   11222232111     00        125677


Q ss_pred             HHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE--EEe
Q psy5413         191 EAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV--MFC  263 (285)
Q Consensus       191 ~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s  263 (285)
                      ++++...   +.+++++|++|++++..|-...|.+++++|+++|++||+++|+||+++++     ....++.++.  +.+
T Consensus       205 e~~l~~~---~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDivt  281 (442)
T PRK13360        205 ERLVTLH---DASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLT  281 (442)
T ss_pred             HHHHHhc---CCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCceee
Confidence            7777531   23479999999999988555577899999999999999999999998733     2333444444  568


Q ss_pred             cccccCc---ceeEEeecCccc
Q psy5413         264 LSKGLGA---PVGSILAGPEEF  282 (285)
Q Consensus       264 ~sK~l~~---p~gg~~~~~~~~  282 (285)
                      ++|++++   |+|++++. +++
T Consensus       282 ~gK~l~gG~~P~gav~~~-~~i  302 (442)
T PRK13360        282 CAKGLTNGAIPMGAVFVS-SEI  302 (442)
T ss_pred             eeeccccCccceEEEEEc-HHH
Confidence            8899975   88886654 444

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.85  E-value=4.2e-20  Score=167.74  Aligned_cols=200  Identities=19%  Similarity=0.183  Sum_probs=146.4

Q ss_pred             eeeeeccCCcCC-CcHHHHHHHHhcccC--CCCccCChh----HHHHHHHHHhHcCC----C-cEEEcCChHHHHHHHHH
Q psy5413          67 RTVDIRSDTISK-PTMEMKNYMFNCEVG--DDVYLEDPT----CKELQEKAAKLAGK----E-AAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        67 ~~~~~~~~~~~~-~~~~v~~a~~~~~~~--~~~y~~~~~----~~~l~~~la~~~g~----~-~~~~~~~Gs~a~~~al~  134 (285)
                      ..++|..+.+.. +++.+.+++.+....  ...|.....    ...+++.+++.+|.    + ..++++|+++++..++.
T Consensus        28 ~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~  107 (389)
T PRK05957         28 GTISLGQGVVSYPPPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAIL  107 (389)
T ss_pred             CeEEccCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHH
Confidence            457888766654 667888888765432  234654433    44445555555564    2 35788888899998888


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      +++ .+||+|++++++|.....   ..      ...|.+++.++.+.++.+|++++++.+++       ++++|++.+|+
T Consensus       108 ~~~-~~gd~Vlv~~P~y~~~~~---~~------~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-------~~klv~~~~p~  170 (389)
T PRK05957        108 AIT-DPGDEIILNTPYYFNHEM---AI------TMAGCQPILVPTDDNYQLQPEAIEQAITP-------KTRAIVTISPN  170 (389)
T ss_pred             Hhc-CCCCEEEEeCCCCcCHHH---HH------HhcCCEEEEeecCCCCCcCHHHHHHhcCc-------CceEEEEeCCC
Confidence            876 589999998877643322   11      24588888888866778999999999977       78999999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc----ccCC-eEEEecccccCc--ceeEEeecCc
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC----ASVD-TVMFCLSKGLGA--PVGSILAGPE  280 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~----~~~d-v~~~s~sK~l~~--p~gg~~~~~~  280 (285)
                      ||| |.+++.+++++|+++|++||+++|+||+|..+.       ...    .... +++.|+||.++.  .+.|+++.++
T Consensus       171 NPt-G~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~  249 (389)
T PRK05957        171 NPT-GVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPI  249 (389)
T ss_pred             CCC-CcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecCH
Confidence            999 999999999999999999999999999976111       111    1112 448999999864  5678888887


Q ss_pred             cccc
Q psy5413         281 EFIQ  284 (285)
Q Consensus       281 ~~i~  284 (285)
                      ++++
T Consensus       250 ~~~~  253 (389)
T PRK05957        250 HLLE  253 (389)
T ss_pred             HHHH
Confidence            7764

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.85  E-value=1.7e-20  Score=169.52  Aligned_cols=162  Identities=20%  Similarity=0.181  Sum_probs=128.6

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT  178 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~  178 (285)
                      .+|...+||+.+++++|.+.++.++||++|+..++.+++ ++||+|+++.+.|..+.......      ...|.++..+.
T Consensus        51 ~np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll-~~GD~Vlv~~~~y~~~~~~~~~~------~~~g~~v~~~~  123 (385)
T PRK08574         51 ENPTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLL-KAGDRVVLPMEAYGTTLRLLKSL------EKFGVKVVLAY  123 (385)
T ss_pred             CCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHh------hccCcEEEEEC
Confidence            578899999999999999999999999999999998876 69999999888876553311111      23355555443


Q ss_pred             cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C--hhhhcc
Q psy5413         179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P--LAEVCA  255 (285)
Q Consensus       179 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~--~~~~~~  255 (285)
                            .|++++++++++.      ++++|++++|+||+ |.++|   +++|+++|+++|+++|+|++++ +  ...+..
T Consensus       124 ------~d~~~l~~~i~~~------~tklV~ie~p~NPt-G~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~~l~~  187 (385)
T PRK08574        124 ------PSTEDIIEAIKEG------RTKLVFIETMTNPT-LKVID---VPEVAKAAKELGAILVVDNTFATPLLYRPLRH  187 (385)
T ss_pred             ------CCHHHHHHhcCcc------CceEEEEECCCCCC-CEecC---HHHHHHHHHHcCCEEEEECCCCccccCChhhh
Confidence                  2688999998652      68999999999999 99999   9999999999999999999986 2  223345


Q ss_pred             cCCeEEEecccccCcc---eeE-EeecCcccc
Q psy5413         256 SVDTVMFCLSKGLGAP---VGS-ILAGPEEFI  283 (285)
Q Consensus       256 ~~dv~~~s~sK~l~~p---~gg-~~~~~~~~i  283 (285)
                      ++|+++.|++|+++++   +|| +++++++++
T Consensus       188 GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~  219 (385)
T PRK08574        188 GADFVVHSLTKYIAGHNDVVGGVAVAWSGEFL  219 (385)
T ss_pred             CCcEEEeeCceeecCCCCceeEEEEECcHHHH
Confidence            7899999999999874   567 666666654

>PLN02651 cysteine desulfurase

Probab=99.85  E-value=4.4e-20  Score=166.19  Aligned_cols=195  Identities=19%  Similarity=0.204  Sum_probs=143.8

Q ss_pred             eccCCcCCCcHHHHHHHHhcccCCC---C---c--c--CChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHcc-
Q psy5413          71 IRSDTISKPTMEMKNYMFNCEVGDD---V---Y--L--EDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHC-  137 (285)
Q Consensus        71 ~~~~~~~~~~~~v~~a~~~~~~~~~---~---y--~--~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~-  137 (285)
                      |.+...+..++++++++.+......   .   +  +  ......++++.+++++|.+  .++|++|||+++..++..+. 
T Consensus         3 ld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~   82 (364)
T PLN02651          3 LDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMH   82 (364)
T ss_pred             ccCcCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHH
Confidence            4455556678899999876543211   0   1  1  1234778899999999875  46899999999888877653 


Q ss_pred             --ccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccC
Q psy5413         138 --DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHN  215 (285)
Q Consensus       138 --~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n  215 (285)
                        .++|++|++.+..|.+........      ...|.+++.++.++++.+|+++++++|++       ++++|++++++|
T Consensus        83 ~~~~~g~~vl~~~~~h~s~~~~~~~~------~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-------~t~lv~v~~~~n  149 (364)
T PLN02651         83 FYKDKKKHVITTQTEHKCVLDSCRHL------QQEGFEVTYLPVKSDGLVDLDELAAAIRP-------DTALVSVMAVNN  149 (364)
T ss_pred             hccCCCCEEEEcccccHHHHHHHHHH------HhcCCEEEEEccCCCCcCCHHHHHHhcCC-------CcEEEEEECCCC
Confidence              256888998887775543211111      23477888888767788899999999987       789999999999


Q ss_pred             CCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCcce-eEEeecCcccc
Q psy5413         216 YCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPV-GSILAGPEEFI  283 (285)
Q Consensus       216 ~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~-gg~~~~~~~~i  283 (285)
                      ++ |.+.|   +++|.++||++|+++++|++|+ +   +.....++|+++++.+|| ++|. .|++..+++.+
T Consensus       150 ~t-G~~~~---l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~-~gp~G~g~l~v~~~~~  217 (364)
T PLN02651        150 EI-GVIQP---VEEIGELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKI-YGPKGVGALYVRRRPR  217 (364)
T ss_pred             Cc-eeccc---HHHHHHHHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechhhh-CCCCceEEEEEcCCCC
Confidence            99 99999   9999999999999999999988 2   222235789999999998 4554 35555555443

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.85  E-value=1.6e-21  Score=173.43  Aligned_cols=210  Identities=20%  Similarity=0.205  Sum_probs=134.5

Q ss_pred             CCeeeeecc----CCcCCCcHHHHHHHHhcccCC-C---CccCChhHHHHHHHHHhHc--CCCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRS----DTISKPTMEMKNYMFNCEVGD-D---VYLEDPTCKELQEKAAKLA--GKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~----~~~~~~~~~v~~a~~~~~~~~-~---~y~~~~~~~~l~~~la~~~--g~~~~~~~~~Gs~a~~~al~  134 (285)
                      |++++||.+    .+.++.+|++.+++.+++... .   ....++...+|.+.|.+.+  +.+.++|++|||+|++.|++
T Consensus        15 G~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~Alk   94 (339)
T PF00202_consen   15 GREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPGGLDRVFFANSGSEAVEAALK   94 (339)
T ss_dssp             SEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHH
T ss_pred             CCEEEECCCCccceecCCCccccchhHHHHhhhcccccccceeccchhhhhhhhhhccccccceeeeccCchHHHHHHHH
Confidence            455566543    355779999999999876532 1   1224567889999999998  56678999999999999999


Q ss_pred             Hcc------ccCCCe-EEe-cCCcceeeecccccccccccccccce---eeeeeecCCCCC-----CCHHHHHHHhcccc
Q psy5413         135 THC------DRRDSE-IIV-GDCSHIMLWEQGGASQTSVYSQIGRV---LMRGVTNQKDGT-----FDLDEMEAKFSTAD  198 (285)
Q Consensus       135 ~~~------~~~g~~-vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~-----~d~~~l~~~i~~~~  198 (285)
                      ++.      ..+++. |+. ...||+.+.....+...+.+...++.   .+..+|.+....     ...+++++.+.+. 
T Consensus        95 la~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-  173 (339)
T PF00202_consen   95 LARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAAL-  173 (339)
T ss_dssp             HHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhh-
Confidence            988      445554 443 57889877543332212222222222   223444421110     0122234333221 


Q ss_pred             cccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcc----cCCeEEEecccccC
Q psy5413         199 NIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCA----SVDTVMFCLSKGLG  269 (285)
Q Consensus       199 ~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~----~~dv~~~s~sK~l~  269 (285)
                        +.+++++|++|+.++..|....+++++++|+++|++||+++|+||+++++.     ...+    ..|++  +++|+++
T Consensus       174 --~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv--~~gK~l~  249 (339)
T PF00202_consen  174 --NADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIV--TFGKGLG  249 (339)
T ss_dssp             --HGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEE--EEEGGGG
T ss_pred             --cCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCccc--ccccchh
Confidence              234899999999999886778889999999999999999999999988442     2222    34554  4559998


Q ss_pred             c--ceeEEeecC
Q psy5413         270 A--PVGSILAGP  279 (285)
Q Consensus       270 ~--p~gg~~~~~  279 (285)
                      +  |+++++.++
T Consensus       250 gG~p~sav~~~~  261 (339)
T PF00202_consen  250 GGLPISAVLGSE  261 (339)
T ss_dssp             TTSSEEEEEEEH
T ss_pred             hhhhcccccccc
Confidence            8  888777654

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.85  E-value=1.3e-20  Score=170.75  Aligned_cols=162  Identities=19%  Similarity=0.180  Sum_probs=132.7

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|...++++.+++++|.+.+++++||++|+..++.+++ ++||+|++++..|..+.... ...      ...|.+++.+
T Consensus        59 ~~p~~~~le~~la~l~g~~~~v~~ssG~~Ai~~al~al~-~~Gd~Vi~~~~~y~~t~~~~~~~~------~~~G~~v~~v  131 (390)
T PRK08133         59 TNPTVTMFQERLAALEGAEACVATASGMAAILAVVMALL-QAGDHVVSSRSLFGSTVSLFEKIF------ARFGIETTFV  131 (390)
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEccCcchhHHHHHHHHH------HHcCcEEEEE
Confidence            567899999999999999999999999999999998876 68999999887765543211 111      2457788777


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~  254 (285)
                      +..     |++++++++++       ++++|++++|+||+ |.+.|   +++|+++|++||+++|+|+++...   ..+.
T Consensus       132 d~~-----d~~~l~~~i~~-------~tklV~ie~p~Npt-G~v~d---l~~I~~la~~~gi~livD~t~~~~~~~~pl~  195 (390)
T PRK08133        132 DLT-----DLDAWRAAVRP-------NTKLFFLETPSNPL-TELAD---IAALAEIAHAAGALLVVDNCFCTPALQQPLK  195 (390)
T ss_pred             CCC-----CHHHHHHhcCc-------CCeEEEEECCCCCC-CCcCC---HHHHHHHHHHcCCEEEEECCCcccccCCchh
Confidence            653     78999999987       89999999999999 89999   999999999999999999998622   2233


Q ss_pred             ccCCeEEEecccccCc---ceeEEeecCcccc
Q psy5413         255 ASVDTVMFCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                      .++|+++.|++|++++   .+||+++++++++
T Consensus       196 ~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~  227 (390)
T PRK08133        196 LGADVVIHSATKYLDGQGRVLGGAVVGSKELM  227 (390)
T ss_pred             hCCcEEEeecceeecCCcceEeEEEEcCHHHH
Confidence            4789999999999987   4678888877654

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.85  E-value=5.2e-20  Score=167.78  Aligned_cols=207  Identities=16%  Similarity=0.157  Sum_probs=138.6

Q ss_pred             CCeeeeeccCCc----CCCcHHHHHHHHhcccCCC---CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcc
Q psy5413          65 NIRTVDIRSDTI----SKPTMEMKNYMFNCEVGDD---VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        65 ~~~~~~~~~~~~----~~~~~~v~~a~~~~~~~~~---~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~  137 (285)
                      |++++||.++..    ++.+|+|.+++.++.....   .....+...++++.++++++.+.++|++||++|++.|++++.
T Consensus        36 g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~ai~~a~  115 (401)
T TIGR01885        36 GKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLFGYDKVLPMNTGAEAVETAIKLAR  115 (401)
T ss_pred             CCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhcCCCEEEEeCccHHHHHHHHHHHH
Confidence            667788877533    3469999999988765211   111456789999999999998889999999999999999975


Q ss_pred             cc--------CCCe-EEec-CCcceeeecccccccccccccccce---eeeeeecCCCCCCCHHHHHHHhcccccccCCc
Q psy5413         138 DR--------RDSE-IIVG-DCSHIMLWEQGGASQTSVYSQIGRV---LMRGVTNQKDGTFDLDEMEAKFSTADNIHCAS  204 (285)
Q Consensus       138 ~~--------~g~~-vi~~-~~~h~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~  204 (285)
                      ..        +++. |+.. ..+|+.+.....++..+.+...++.   .+..++.     .|++++++.+++    ++++
T Consensus       116 ~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~----~~~~  186 (401)
T TIGR01885       116 KWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY-----NNLEALEEALED----HGPN  186 (401)
T ss_pred             HHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC-----CCHHHHHHHHHh----cCCC
Confidence            31        2343 4443 4567765433222211111111221   2223332     378999998865    2347


Q ss_pred             eEEEEEecccCCCCeeeC-CHHHHHHHHHHHHHcCCeEEEeCccCChh----h-hc----ccCCeEEEecccccCc---c
Q psy5413         205 TSLVCVENTHNYCGGTVL-PMQWLRELKARCQEHNIPVHMDGARLPLA----E-VC----ASVDTVMFCLSKGLGA---P  271 (285)
Q Consensus       205 ~~~v~i~~~~n~~gG~~~-~~~~l~~i~~la~~~gi~li~Dea~~~~~----~-~~----~~~dv~~~s~sK~l~~---p  271 (285)
                      +++|++|++++++ |.+. +.++|++|+++|++||+++|+||+|+++.    . ..    ...|++  +++|.+++   |
T Consensus       187 ~~avi~E~v~~~~-G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~--~~gK~l~~g~~~  263 (401)
T TIGR01885       187 VCAFIVEPIQGEA-GVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIV--LLGKALSGGVYP  263 (401)
T ss_pred             EEEEEEeCccCCC-CCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEE--EeeccccCCCCC
Confidence            8999999999998 5555 56789999999999999999999987431    1 11    123544  56799876   4


Q ss_pred             eeEEeecCccccc
Q psy5413         272 VGSILAGPEEFIQ  284 (285)
Q Consensus       272 ~gg~~~~~~~~i~  284 (285)
                      +| ++++++++++
T Consensus       264 ig-~v~~~~~i~~  275 (401)
T TIGR01885       264 VS-AVLADDDVML  275 (401)
T ss_pred             cE-EEEEcHHHHh
Confidence            44 4555666543

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.85  E-value=2.6e-20  Score=169.67  Aligned_cols=219  Identities=16%  Similarity=0.154  Sum_probs=146.6

Q ss_pred             CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccC----CcCCCcHHHHHHHHhcccCC----CCc
Q psy5413          26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSD----TISKPTMEMKNYMFNCEVGD----DVY   97 (285)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~----~~y   97 (285)
                      +|..+.++.+.+.|+..                      |++++||.++    +.++.+|++.+++.+++...    ..|
T Consensus        25 ~~~~~~~~~G~~~~d~d----------------------g~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~   82 (398)
T PRK03244         25 PPLALVRGEGAVVWDVD----------------------GKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLF   82 (398)
T ss_pred             CCceEEEeeecEEEECC----------------------CCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccCcc
Confidence            45556666666666633                      5667777653    22445899999998877631    234


Q ss_pred             cCChhHHHHHHHHHhHcCC---CcEEEcCChHHHHHHHHHHccccCCC-eEEe-cCCcceeeeccccccccccccc---c
Q psy5413          98 LEDPTCKELQEKAAKLAGK---EAAIFVPSGTMGNLIAIMTHCDRRDS-EIIV-GDCSHIMLWEQGGASQTSVYSQ---I  169 (285)
Q Consensus        98 ~~~~~~~~l~~~la~~~g~---~~~~~~~~Gs~a~~~al~~~~~~~g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~---~  169 (285)
                      . ++...++++.++++++.   +.+++++||++|++.+++++.. +|+ .++. ...||+++.....+.....+..   .
T Consensus        83 ~-~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~-~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~  160 (398)
T PRK03244         83 A-TEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARL-TGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEP  160 (398)
T ss_pred             C-CHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHH-HCCCeEEEECCCcCCccHHHHhccCCcccccCCCC
Confidence            4 45578999999999875   3679999999999999998774 663 3443 4677877543222210000000   1


Q ss_pred             cceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC
Q psy5413         170 GRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP  249 (285)
Q Consensus       170 ~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~  249 (285)
                      .+..+..+|.     .|++++++.+.+       ++++|++++++|++|....+.+++++|.++|++||+++|+||+|++
T Consensus       161 ~~~~~~~~~~-----~d~~~l~~~~~~-------~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g  228 (398)
T PRK03244        161 LPGGVEHVPY-----GDVDALAAAVDD-------DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTG  228 (398)
T ss_pred             CCCCceEeCC-----CCHHHHHHhhcC-------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence            1122333332     388999998865       7899999999999944445667899999999999999999999874


Q ss_pred             hh-----hhcc----cCCeEEEecccccCc--ceeEEeecCcccc
Q psy5413         250 LA-----EVCA----SVDTVMFCLSKGLGA--PVGSILAGPEEFI  283 (285)
Q Consensus       250 ~~-----~~~~----~~dv~~~s~sK~l~~--p~gg~~~~~~~~i  283 (285)
                      +.     ....    ..|  +.+++|++++  |+|++++. ++++
T Consensus       229 ~gr~g~~~~~~~~~~~pD--i~t~sK~l~~G~~ig~~~~~-~~~~  270 (398)
T PRK03244        229 IGRTGAWFAHQHDGVTPD--VVTLAKGLGGGLPIGACLAF-GPAA  270 (398)
T ss_pred             CcccchHHhhhhhCCCCC--EEEEchhhhCCcccEEEEEc-HHHH
Confidence            31     1111    234  4577899986  77766654 4444

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.85  E-value=2.7e-20  Score=171.36  Aligned_cols=212  Identities=13%  Similarity=0.121  Sum_probs=135.7

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCC--CCc--cCChhHHHHHHHHHhHcCC---CcEEEcCChHHHHHHHH
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD--DVY--LEDPTCKELQEKAAKLAGK---EAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~--~~y--~~~~~~~~l~~~la~~~g~---~~~~~~~~Gs~a~~~al  133 (285)
                      |++++||.++    +.++.+|+|.+++.+++...  ..+  ..++...++.++|++....   +.++|++|||+|++.|+
T Consensus        55 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Al  134 (443)
T PRK06058         55 GNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAV  134 (443)
T ss_pred             CCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHH
Confidence            5666666553    45779999999999887632  122  2456678899999998742   46799999999999999


Q ss_pred             HHccccCCC-eEEe-cCCcceeeecccccccc-cccccccc---eeeeeee--cCCCC----CC--------CHHHHHHH
Q psy5413         134 MTHCDRRDS-EIIV-GDCSHIMLWEQGGASQT-SVYSQIGR---VLMRGVT--NQKDG----TF--------DLDEMEAK  193 (285)
Q Consensus       134 ~~~~~~~g~-~vi~-~~~~h~~~~~~~~~~~~-~~~~~~~g---~~~~~~~--~~~~~----~~--------d~~~l~~~  193 (285)
                      +++....|+ +|+. ...||+.+.....+... ..+...++   ..+..++  ...+.    ..        .++.+++.
T Consensus       135 klAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  214 (443)
T PRK06058        135 KIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQ  214 (443)
T ss_pred             HHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHh
Confidence            988755554 3443 57789887543322210 11111111   1112222  11110    00        12223333


Q ss_pred             hcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE--EEeccc
Q psy5413         194 FSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV--MFCLSK  266 (285)
Q Consensus       194 i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK  266 (285)
                      +.      .+++++|++|+.++..|..+.|.++|++|+++|++||+++|+||+++++     ....++.++.  +.+++|
T Consensus       215 ~~------~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~gK  288 (443)
T PRK06058        215 VG------ADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTAK  288 (443)
T ss_pred             hC------CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEcc
Confidence            32      2379999999999887444567899999999999999999999998843     2223444443  556679


Q ss_pred             ccCc--ceeEEeecCcccc
Q psy5413         267 GLGA--PVGSILAGPEEFI  283 (285)
Q Consensus       267 ~l~~--p~gg~~~~~~~~i  283 (285)
                      .+++  |+|+++. +++++
T Consensus       289 ~l~~G~Pi~av~~-~~~i~  306 (443)
T PRK06058        289 GIAGGLPLSAVTG-RAEIM  306 (443)
T ss_pred             cccCCCccEEEEE-cHHHH
Confidence            9987  7776665 45554

>PRK09082 methionine aminotransferase; Validated

Probab=99.85  E-value=2.3e-20  Score=169.33  Aligned_cols=201  Identities=17%  Similarity=0.083  Sum_probs=151.4

Q ss_pred             CeeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhH----cCCC-----cEEEcCChHHHHHHHHH
Q psy5413          66 IRTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKL----AGKE-----AAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~----~g~~-----~~~~~~~Gs~a~~~al~  134 (285)
                      ..+++|..+.+.. +++.+.+++.+.... ...|.......++++.++++    +|.+     .+++++||++|+..++.
T Consensus        30 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~  109 (386)
T PRK09082         30 HGAINLSQGFPDFDGPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAIL  109 (386)
T ss_pred             CCEEEecCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHH
Confidence            4568888877665 466888887765532 34566555566677666664    4542     46788889999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      +++ .+||+|+++.++|.......         +..|.+++.++.+ +++.+|++++++.+++       ++++|++++|
T Consensus       110 ~~~-~~gd~Vli~~p~y~~~~~~~---------~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~v~l~~p  172 (386)
T PRK09082        110 ALV-RPGDEVIVFDPSYDSYAPAI---------ELAGGRAVRVALQPPDFRVDWQRFAAAISP-------RTRLIILNTP  172 (386)
T ss_pred             HHc-CCCCEEEEeCCCchhhHHHH---------HHcCCEEEEEecCcccccCCHHHHHHhcCc-------cceEEEEeCC
Confidence            887 68999999988876543322         2348888888874 3567899999999976       7899999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhcc--cCCeEEEecccccCc--ceeEEeecC
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVCA--SVDTVMFCLSKGLGA--PVGSILAGP  279 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~~--~~dv~~~s~sK~l~~--p~gg~~~~~  279 (285)
                      +||| |.+++.+++++|.++|++||+++|+||+|..+          .....  ...+++.|+||.++.  .+.|+++++
T Consensus       173 ~NPt-G~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~  251 (386)
T PRK09082        173 HNPS-GTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAP  251 (386)
T ss_pred             CCCC-CcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCC
Confidence            9999 99999999999999999999999999997611          11111  122458999999864  677888888


Q ss_pred             ccccc
Q psy5413         280 EEFIQ  284 (285)
Q Consensus       280 ~~~i~  284 (285)
                      +++++
T Consensus       252 ~~l~~  256 (386)
T PRK09082        252 AALSA  256 (386)
T ss_pred             HHHHH
Confidence            87764

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.84  E-value=5.5e-20  Score=167.41  Aligned_cols=200  Identities=19%  Similarity=0.174  Sum_probs=149.1

Q ss_pred             CeeeeeccCCcCC-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcC-------CCcEEEcCChHHHHHHHHHHcc
Q psy5413          66 IRTVDIRSDTISK-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAG-------KEAAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g-------~~~~~~~~~Gs~a~~~al~~~~  137 (285)
                      ..+++|..+.+.. ..+.+.+++.+.......|.......++++.++++++       .+.+++++||++|+..++..++
T Consensus        30 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~  109 (397)
T PRK07568         30 IKVYHLNIGQPDIKTPEVFFEAIKNYDEEVLAYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAIC  109 (397)
T ss_pred             CCEEEecCCCCCCCCCHHHHHHHHHHhcCCcCcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHhc
Confidence            4578888887765 5668888887654434567766678899999999862       3456899999999999998876


Q ss_pred             ccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC-CC-C-CCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         138 DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DG-T-FDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       138 ~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~-~-~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                       ++|++|++++++|.....   ..      +..|.+++.++.+. ++ . .+++++++++++       ++++|++++|+
T Consensus       110 -~~gd~Vl~~~p~y~~~~~---~~------~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~-------~~~~v~i~~p~  172 (397)
T PRK07568        110 -DPGDEILVPEPFYANYNG---FA------TSAGVKIVPVTTKIEEGFHLPSKEEIEKLITP-------KTKAILISNPG  172 (397)
T ss_pred             -CCCCEEEEecCCCccHHH---HH------HHcCCEEEEeecCcccCCCCCCHHHHHHhcCc-------cceEEEEECCC
Confidence             589999998876543322   22      34588888888642 22 2 367999999877       78999999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcccCC--eEEEecccccCc--ceeEEeec-C
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVCASVD--TVMFCLSKGLGA--PVGSILAG-P  279 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~~~d--v~~~s~sK~l~~--p~gg~~~~-~  279 (285)
                      ||| |.+++.+++++|+++|+++|+++|+||+|..+.          .+....+  +++.|+||.+++  .+.|+++. +
T Consensus       173 NPt-G~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~  251 (397)
T PRK07568        173 NPT-GVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKN  251 (397)
T ss_pred             CCC-CccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCC
Confidence            999 999999999999999999999999999987221          1111123  448999998863  56667665 4


Q ss_pred             cccc
Q psy5413         280 EEFI  283 (285)
Q Consensus       280 ~~~i  283 (285)
                      ++++
T Consensus       252 ~~~~  255 (397)
T PRK07568        252 KELI  255 (397)
T ss_pred             HHHH
Confidence            5554

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.84  E-value=2e-20  Score=170.94  Aligned_cols=234  Identities=14%  Similarity=0.156  Sum_probs=149.3

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC--CCC--ccCChh
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG--DDV--YLEDPT  102 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~--~~~--y~~~~~  102 (285)
                      |..+.++.+.+.|+..++.+++....|+.                  .+.++.+|++.+|+.+++..  +..  ...++.
T Consensus        26 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~------------------~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~   87 (428)
T PRK07986         26 VYPVVSAEGCELILADGRRLVDGMSSWWA------------------AIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPP   87 (428)
T ss_pred             CeeEEeeeeeEEEeCCCCEEEEcchhHHh------------------hcCCCCCHHHHHHHHHHHhhcCCccccccCCHH
Confidence            34566667777776554444443333332                  14477999999999988764  221  224667


Q ss_pred             HHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc-----CCC-eEEe-cCCcceeeeccccccc-ccccccccce
Q psy5413         103 CKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR-----RDS-EIIV-GDCSHIMLWEQGGASQ-TSVYSQIGRV  172 (285)
Q Consensus       103 ~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~-----~g~-~vi~-~~~~h~~~~~~~~~~~-~~~~~~~~g~  172 (285)
                      ..+|.++|+++.+  .+.++|++|||+|++.|++++...     +++ +|+. ...||+.+.....+.. ...+...++.
T Consensus        88 ~~~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~  167 (428)
T PRK07986         88 AIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKG  167 (428)
T ss_pred             HHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCC
Confidence            8899999999874  467899999999999999998743     233 3443 6788987644332221 1112111111


Q ss_pred             ---eeeeeecC--CC----CCCCHHHHHHHhcccccccCCceEEEEEecc-cCCCCeeeCCHHHHHHHHHHHHHcCCeEE
Q psy5413         173 ---LMRGVTNQ--KD----GTFDLDEMEAKFSTADNIHCASTSLVCVENT-HNYCGGTVLPMQWLRELKARCQEHNIPVH  242 (285)
Q Consensus       173 ---~~~~~~~~--~~----~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~-~n~~gG~~~~~~~l~~i~~la~~~gi~li  242 (285)
                         .+..++..  ..    ...|++++++.++.    +.+++++|++|+. ++..|..+.++++|++|+++|++||+++|
T Consensus       168 ~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~----~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI  243 (428)
T PRK07986        168 YLPENLFAPAPQSRFDGEWDERDIAPFARLMAA----HRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLI  243 (428)
T ss_pred             CCCCCEEECCCCcccchhhHHHHHHHHHHHHHh----CCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence               11222221  10    12467788888864    3347999999995 77764456678999999999999999999


Q ss_pred             EeCccCChh-----hhcccCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413         243 MDGARLPLA-----EVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       243 ~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                      +||+++++.     ...++.++.  +.+++|.+++   |+++++. +++++
T Consensus       244 ~DEv~tG~GrtG~~fa~~~~gv~PDi~t~gK~l~gG~~p~~av~~-~~~i~  293 (428)
T PRK07986        244 ADEIATGFGRTGKLFACEHAGIAPDILCLGKALTGGTMTLSATLT-TREVA  293 (428)
T ss_pred             EeccccCCccCCCeeeecccCCCCCEEEechhhhCCcccCcchhc-hHHHH
Confidence            999988542     122333333  4568899876   6665554 44443

>PRK09148 aminotransferase; Validated

Probab=99.84  E-value=5.7e-20  Score=167.70  Aligned_cols=204  Identities=13%  Similarity=0.090  Sum_probs=149.9

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc----CC----C-cEEEcCChHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA----GK----E-AAIFVPSGTMGNLIA  132 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~----g~----~-~~~~~~~Gs~a~~~a  132 (285)
                      |+.+++|..+++.. +++.+.+++.+....  ...|....+..+|++.+++++    |.    + .+++++|+++++..+
T Consensus        29 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~  108 (405)
T PRK09148         29 GADIIDLGMGNPDLPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANM  108 (405)
T ss_pred             CCCeEEcCCCCCCCCCCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHH
Confidence            56789999888765 456788887765432  245765556788999999886    32    3 578899999999999


Q ss_pred             HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      +.+++ .+||.|++++++|.......         ...|.+++.++...++. ++++++++++.    +..++++|++++
T Consensus       109 ~~~l~-~~gd~Vl~~~P~y~~~~~~~---------~~~g~~v~~v~~~~~~~-~~~~l~~~~~~----~~~~~~~v~l~~  173 (405)
T PRK09148        109 AQAIT-APGDVILCPNPSYPIHAFGF---------IMAGGVIRSVPAEPDEE-FFPALERAVRH----SIPKPIALIVNY  173 (405)
T ss_pred             HHHhc-CCCCEEEEcCCCCcccHHHH---------HhcCCEEEEEeCCCCCC-CccCHHHHHhh----ccccceEEEEeC
Confidence            99887 58999999988875443211         23488888888754332 34455555543    122789999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc---ccCC--eEEEecccccCc--ceeEEeec
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC---ASVD--TVMFCLSKGLGA--PVGSILAG  278 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~---~~~d--v~~~s~sK~l~~--p~gg~~~~  278 (285)
                      |+||| |.+++.+++++|.++|++||+++|+||+|..+.       .+.   ...+  +++.|+||.++.  .+.|++++
T Consensus       174 P~NPt-G~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~  252 (405)
T PRK09148        174 PSNPT-AYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVG  252 (405)
T ss_pred             CCCCC-CcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeC
Confidence            99999 999999999999999999999999999987221       111   1123  348999998874  67888988


Q ss_pred             Cccccc
Q psy5413         279 PEEFIQ  284 (285)
Q Consensus       279 ~~~~i~  284 (285)
                      ++++++
T Consensus       253 ~~~~i~  258 (405)
T PRK09148        253 NERLIA  258 (405)
T ss_pred             CHHHHH
Confidence            887764

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.84  E-value=2.7e-20  Score=170.05  Aligned_cols=230  Identities=13%  Similarity=0.140  Sum_probs=146.6

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC--CCCc--cCChh
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG--DDVY--LEDPT  102 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~--~~~y--~~~~~  102 (285)
                      |..+.++.+.+.|+..++.+++....++.                  .+.++.+|++.+++.+++..  +..+  ..++.
T Consensus        23 p~~i~~a~G~~l~D~dG~~ylD~~~g~~~------------------~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~   84 (422)
T PRK05630         23 NRLVTSTDGVFLTLEDGSTVIDAMSSWWS------------------AAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEP   84 (422)
T ss_pred             CeeEEeceeeEEEECCCCEEEEcchhHHH------------------hcCCCCCHHHHHHHHHHHHhCCCcccCCcCCHH
Confidence            55666777777777554444443333332                  24578999999999988764  2222  24566


Q ss_pred             HHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCC-eEE-ecCCcceeeecccccccc-cccccccc
Q psy5413         103 CKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDS-EII-VGDCSHIMLWEQGGASQT-SVYSQIGR  171 (285)
Q Consensus       103 ~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~-~vi-~~~~~h~~~~~~~~~~~~-~~~~~~~g  171 (285)
                      ..+|.++|++..+  .++++|++|||+|++.|++++...      +++ +|+ ....||+.+..+..+... ..+...++
T Consensus        85 ~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~  164 (422)
T PRK05630         85 AIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWK  164 (422)
T ss_pred             HHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCccccccccc
Confidence            8899999999873  567899999999999999998642      233 344 367889876443322210 11111112


Q ss_pred             e---eeeeeecCCCCCCC-------HHHHHHHhcccccccCCceEEEEEecc-cCCCCeeeCCHHHHHHHHHHHHHcCCe
Q psy5413         172 V---LMRGVTNQKDGTFD-------LDEMEAKFSTADNIHCASTSLVCVENT-HNYCGGTVLPMQWLRELKARCQEHNIP  240 (285)
Q Consensus       172 ~---~~~~~~~~~~~~~d-------~~~l~~~i~~~~~~~~~~~~~v~i~~~-~n~~gG~~~~~~~l~~i~~la~~~gi~  240 (285)
                      .   ....+|.+.....+       ++.+++.+.+       ++++|++|+. ++.+|..+.|.+++++|+++|++||++
T Consensus       165 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-------~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~l  237 (422)
T PRK05630        165 GTLPEQIFAPAPPVRGSSPQEISEYLRSLELLIDE-------TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDIL  237 (422)
T ss_pred             ccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHhh-------ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCE
Confidence            1   12222321111111       2344555543       8999999995 988755567789999999999999999


Q ss_pred             EEEeCccCChh-----hhcccCCeE--EEecccccCc---ceeEEeecCccc
Q psy5413         241 VHMDGARLPLA-----EVCASVDTV--MFCLSKGLGA---PVGSILAGPEEF  282 (285)
Q Consensus       241 li~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~  282 (285)
                      +|+||+++++.     ...+..++.  +.+++|++++   |.++++ .++++
T Consensus       238 lI~DEv~tG~GrtG~~~a~~~~gv~PDi~t~gK~l~gG~~p~~av~-~~~~i  288 (422)
T PRK05630        238 LIADEIATGFGRTGELFATLAAGVTPDIMCVGKALTGGFMSFAATL-CTDKV  288 (422)
T ss_pred             EEEecceeCCCcCchhhHHHhcCCCCCeeeeechhhcCccccceee-ccHHH
Confidence            99999988442     223344444  5588899955   555544 44544

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.84  E-value=3.7e-20  Score=170.71  Aligned_cols=210  Identities=14%  Similarity=0.159  Sum_probs=140.9

Q ss_pred             cCCeeeeecc---CCcCCCcHHHHHHHHhcccCCC---CccCChhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHH
Q psy5413          64 VNIRTVDIRS---DTISKPTMEMKNYMFNCEVGDD---VYLEDPTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMT  135 (285)
Q Consensus        64 ~~~~~~~~~~---~~~~~~~~~v~~a~~~~~~~~~---~y~~~~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~  135 (285)
                      .|++++||.+   .+.++.+|+|.+++.+++....   ....++...+|++.|+++++  .+.++|++|||+|+++|+++
T Consensus        70 dG~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~Alkl  149 (459)
T PRK06082         70 DGKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPFSPRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKL  149 (459)
T ss_pred             CCCEEEEcccHhhcccCCCCHHHHHHHHHHHHhCCCccCccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHH
Confidence            4678888863   2346699999999998876311   11246778999999999985  35789999999999999999


Q ss_pred             ccccCCC-eEE-ecCCcceeeecccccccccccccccce---eeeeeecCC-----CCCC------CHHHHHHHhccccc
Q psy5413         136 HCDRRDS-EII-VGDCSHIMLWEQGGASQTSVYSQIGRV---LMRGVTNQK-----DGTF------DLDEMEAKFSTADN  199 (285)
Q Consensus       136 ~~~~~g~-~vi-~~~~~h~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~-----~~~~------d~~~l~~~i~~~~~  199 (285)
                      +...+|+ +|+ +.+.||+.+.....+.....+...++.   .+..++...     ....      +++++++.+++   
T Consensus       150 Ar~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~---  226 (459)
T PRK06082        150 ARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK---  226 (459)
T ss_pred             HHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhc---
Confidence            8755554 343 467889877433222211222211111   122222111     1111      23567777754   


Q ss_pred             ccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc--
Q psy5413         200 IHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA--  270 (285)
Q Consensus       200 ~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~--  270 (285)
                       + +++++|++|++++.+ +.+.|.+++++|+++|++||+++|+||+++++     ....++.++.  +.+++|++++  
T Consensus       227 -~-~~vAavIvEPv~g~g-~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~~gKgl~gG~  303 (459)
T PRK06082        227 -E-GGIGAFIAEAVRNTD-VQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILCIGKGLGGGL  303 (459)
T ss_pred             -C-CCEEEEEECCccCCC-CcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCCEEEecccccCCC
Confidence             1 278999999999874 77888999999999999999999999998843     2223444443  5568899987  


Q ss_pred             -ceeEEeecC
Q psy5413         271 -PVGSILAGP  279 (285)
Q Consensus       271 -p~gg~~~~~  279 (285)
                       |+++++..+
T Consensus       304 ~P~~av~~~~  313 (459)
T PRK06082        304 VPIAAMITKD  313 (459)
T ss_pred             CcceEEEEcH
Confidence             777776653

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.84  E-value=6.4e-20  Score=167.05  Aligned_cols=201  Identities=14%  Similarity=0.072  Sum_probs=151.8

Q ss_pred             eeeeeccCCcCCCcHHHHHHHHhcccC---CCCcc-------CChhHHHHHHHHHhHcCCC---cEEEcCChHHHHHHHH
Q psy5413          67 RTVDIRSDTISKPTMEMKNYMFNCEVG---DDVYL-------EDPTCKELQEKAAKLAGKE---AAIFVPSGTMGNLIAI  133 (285)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~a~~~~~~~---~~~y~-------~~~~~~~l~~~la~~~g~~---~~~~~~~Gs~a~~~al  133 (285)
                      .++.|.+...+..++.+.+++.+....   ...++       ......++++.+++++|.+   .+++++|+|+++..++
T Consensus        16 ~~iyld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~   95 (398)
T TIGR03392        16 GTVYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVA   95 (398)
T ss_pred             CeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHH
Confidence            457777777777788999998765431   11111       1133678999999999874   3588999999999999


Q ss_pred             HHcc---ccCCCeEEecCCcceeeec-ccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413         134 MTHC---DRRDSEIIVGDCSHIMLWE-QGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVC  209 (285)
Q Consensus       134 ~~~~---~~~g~~vi~~~~~h~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~  209 (285)
                      .++.   .++|++|+++++.|.+... .....      +..|.+++.++.++++.+|++++++++++       ++++|+
T Consensus        96 ~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~------~~~g~~v~~v~~~~~~~~~~~~l~~~i~~-------~t~lv~  162 (398)
T TIGR03392        96 QSYARPRLQPGDEIIVSEAEHHANLIPWLMVA------QQTGAKVVKLPIGADLLPDIRQLPELLTP-------RTRILA  162 (398)
T ss_pred             HHhhhccCCCCCEEEECCcchhHHHHHHHHHH------HHcCcEEEEEecCCCCCcCHHHHHHHhcc-------CceEEE
Confidence            8863   2578999999888755311 11222      35688999998876777899999999987       789999


Q ss_pred             EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----ChhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      +++++|++ |.+.|   +++|+++|+++|+++++|++|+    .+.....++|++++|+||.++.+..|+++.++++++
T Consensus       163 i~~~~n~t-G~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~  237 (398)
T TIGR03392       163 LGQMSNVT-GGCPD---LARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYGPTGIGVLYGKTELLE  237 (398)
T ss_pred             EECccccc-cccCC---HHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEecccccCCCceEEEEEcHHHHh
Confidence            99999999 89999   9999999999999999999986    221122468999999999766444577777776653

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.84  E-value=8e-20  Score=166.61  Aligned_cols=195  Identities=16%  Similarity=0.234  Sum_probs=145.5

Q ss_pred             eeeccCCcCCCcHHHHHHHHhcccC---CCC---c----cCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHc
Q psy5413          69 VDIRSDTISKPTMEMKNYMFNCEVG---DDV---Y----LEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        69 ~~~~~~~~~~~~~~v~~a~~~~~~~---~~~---y----~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~  136 (285)
                      +.|.+...+..++.+++++.+....   ...   +    ...+...++++.+++++|.+  .++|++|||+++..++.++
T Consensus         5 ~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l   84 (402)
T TIGR02006         5 IYLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGI   84 (402)
T ss_pred             EEeeCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHH
Confidence            5566666666788999998665421   111   1    11235778899999999975  4689999999999988765


Q ss_pred             c---ccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         137 C---DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       137 ~---~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      .   .++|++|+++...|.+........      ...|.+++.++.++++.+|++++++++++       ++++|+++++
T Consensus        85 ~~~~~~~g~~Vi~~~~~h~s~~~~~~~~------~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-------~~~lv~v~~~  151 (402)
T TIGR02006        85 AHFYKSKGNHIITSKTEHKAVLDTCRYL------EREGFEVTYLPPKSNGLIDLEELKAAIRD-------DTILVSIMHV  151 (402)
T ss_pred             HHhhcCCCCEEEECCCccHHHHHHHHHH------HhcCCEEEEEccCCCCcCCHHHHHHhcCC-------CCEEEEEECC
Confidence            3   247888999888886654322111      23488888888877788999999999977       7899999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh---hhcccCCeEEEecccccCcc-eeEEeecCc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA---EVCASVDTVMFCLSKGLGAP-VGSILAGPE  280 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~---~~~~~~dv~~~s~sK~l~~p-~gg~~~~~~  280 (285)
                      +|++ |.+.|   +++|.++|+++|+++++|++++ +..   ....++|+++++++|++|.+ .|++++.++
T Consensus       152 ~n~t-G~~~~---~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~  219 (402)
T TIGR02006       152 NNEI-GVIQD---IAAIGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIYGPKGIGALYVRRK  219 (402)
T ss_pred             CcCc-eeccc---HHHHHHHHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhcCCCceEEEEEccC
Confidence            9999 99999   9999999999999999999988 222   12357899999999987643 444444443

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.84  E-value=7.7e-20  Score=166.80  Aligned_cols=196  Identities=16%  Similarity=0.132  Sum_probs=150.4

Q ss_pred             CCeeeeeccCCcC-----CCcHHHHHHHHhcccCC--CCccCChhHHHHHHHHHhHcCC--------CcEEEcCChHHHH
Q psy5413          65 NIRTVDIRSDTIS-----KPTMEMKNYMFNCEVGD--DVYLEDPTCKELQEKAAKLAGK--------EAAIFVPSGTMGN  129 (285)
Q Consensus        65 ~~~~~~~~~~~~~-----~~~~~v~~a~~~~~~~~--~~y~~~~~~~~l~~~la~~~g~--------~~~~~~~~Gs~a~  129 (285)
                      |.++++|..+.+.     .+.+.+.+++.+.....  ..|+......++++.++++++.        +.+++++||++|+
T Consensus        30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al  109 (403)
T TIGR01265        30 EKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAI  109 (403)
T ss_pred             CCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHH
Confidence            5678999988874     36778999888765432  3576667788899999999874        3468999999999


Q ss_pred             HHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEE
Q psy5413         130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       130 ~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                      ..++.+++ .+|++|+++.++|.....   ..      ...|.+++.++..  .++.+|++++++++.+       ++++
T Consensus       110 ~~~~~~l~-~~gd~Vlv~~p~y~~~~~---~~------~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~  172 (403)
T TIGR01265       110 EICIEALA-NPGANILVPRPGFPLYDT---RA------AFSGLEVRLYDLLPEKDWEIDLDGLEALADE-------KTVA  172 (403)
T ss_pred             HHHHHHhC-CCCCEEEEeCCCchhHHH---HH------HHcCCEEEEecCCcccCCccCHHHHHHHhCc-------CccE
Confidence            99999987 689999998887654322   22      3447777777653  2456899999999876       7899


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcccCCeE-EEecccccCc--ceeE
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVCASVDTV-MFCLSKGLGA--PVGS  274 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~~~dv~-~~s~sK~l~~--p~gg  274 (285)
                      |++++|+||+ |.+++.+++++|+++|+++|+++|+||+|..+.          .+.....++ +.|+||.++.  .+.|
T Consensus       173 v~i~~p~NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG  251 (403)
T TIGR01265       173 IVVINPSNPC-GSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLG  251 (403)
T ss_pred             EEEecCCCCC-CCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcceEE
Confidence            9999999999 899999999999999999999999999987221          111222344 8999998654  5666


Q ss_pred             Eeec
Q psy5413         275 ILAG  278 (285)
Q Consensus       275 ~~~~  278 (285)
                      +++.
T Consensus       252 ~~v~  255 (403)
T TIGR01265       252 WIII  255 (403)
T ss_pred             EEEE
Confidence            7665

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.84  E-value=4.1e-20  Score=169.90  Aligned_cols=235  Identities=17%  Similarity=0.154  Sum_probs=150.2

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC----CCccCChh
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD----DVYLEDPT  102 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~----~~y~~~~~  102 (285)
                      |..+.++.+.+.|+..++.+++..+.|+.-                  +.++.+|++.+++.+++..-    .....++.
T Consensus        32 p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~   93 (445)
T PRK09221         32 PRLLVSAEGMYYTDADGRKILDGTAGLWCC------------------NAGHGRPEIVEAVARQAATLDYAPAFQMGHPL   93 (445)
T ss_pred             CceEEeccccEEEeCCCCEEEEccccHhhc------------------cCCCCCHHHHHHHHHHHHhccCccccccCCHH
Confidence            456666777777775544444444333331                  34779999999999887631    11124566


Q ss_pred             HHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHccccC------CC-eEEe-cCCcceeeecccccccccccccccce
Q psy5413         103 CKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDRR------DS-EIIV-GDCSHIMLWEQGGASQTSVYSQIGRV  172 (285)
Q Consensus       103 ~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~~------g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~  172 (285)
                      ..+|.++|++++.  .++++|++|||+|++.|++++....      ++ +||. ...||+.+.....+.....+...++.
T Consensus        94 ~~~la~~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~  173 (445)
T PRK09221         94 AFELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGG  173 (445)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCC
Confidence            8889999999873  5678999999999999999987421      22 3443 67889877443322211112111111


Q ss_pred             ---eeeeeecCC---C--CC--------CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH
Q psy5413         173 ---LMRGVTNQK---D--GT--------FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE  236 (285)
Q Consensus       173 ---~~~~~~~~~---~--~~--------~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~  236 (285)
                         .+..++...   .  ..        .+++++++.++..   +.+++++|++|++++..|-...|.+++++|+++|++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~---~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~  250 (445)
T PRK09221        174 LLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALH---DASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDK  250 (445)
T ss_pred             CCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhc---CCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHH
Confidence               112222211   0  00        1245777777542   124799999999998885556778999999999999


Q ss_pred             cCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413         237 HNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       237 ~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                      ||+++|+||+++++     ....++.++.  +.+++|.+++   |+|+++. +++++
T Consensus       251 ~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~~gK~l~gG~~Pi~av~~-~~~i~  306 (445)
T PRK09221        251 HGILLIFDEVITGFGRLGAAFAAERFGVTPDIITFAKGLTNGAIPMGAVIA-SDEIY  306 (445)
T ss_pred             cCCEEEEeehhhCCCcCchhhHHHhcCCCCCEEEeccccccCcccceeeEE-cHHHH
Confidence            99999999998743     2233444443  5677899975   7777654 45443

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.84  E-value=2.1e-20  Score=167.72  Aligned_cols=189  Identities=16%  Similarity=0.079  Sum_probs=143.2

Q ss_pred             CCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc---EEEcCChHHHHHHHHHHccccCCCeEEecCCccee
Q psy5413          77 SKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA---AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIM  153 (285)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~---~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~  153 (285)
                      ...++++.+++.+....+..-.......++++.+++++|.+.   .+++++|++|+..++.+++ ++|++|++....|..
T Consensus         8 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~-~~g~~vl~~~~~~~~   86 (356)
T cd06451           8 SNVPPRVLKAMNRPMLGHRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLL-EPGDKVLVGVNGVFG   86 (356)
T ss_pred             cCCCHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhC-CCCCEEEEecCCchh
Confidence            446789999997654332211123447799999999999732   4788899999999999887 589999987766543


Q ss_pred             eecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHH
Q psy5413         154 LWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR  233 (285)
Q Consensus       154 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~l  233 (285)
                      .. .....      ...|.+++.++.++++.+|++++++.++++      ++++|++++++|++ |.+.|   +++|.++
T Consensus        87 ~~-~~~~~------~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~------~~~~v~i~~~~~~~-G~~~~---~~~i~~~  149 (356)
T cd06451          87 DR-WADMA------ERYGADVDVVEKPWGEAVSPEEIAEALEQH------DIKAVTLTHNETST-GVLNP---LEGIGAL  149 (356)
T ss_pred             HH-HHHHH------HHhCCCeEEeecCCCCCCCHHHHHHHHhcc------CCCEEEEeccCCCc-ccccC---HHHHHHH
Confidence            21 01122      345888888887666789999999999752      67999999999998 89999   9999999


Q ss_pred             HHHcCCeEEEeCccC-Ch---hhhcccCCeEEEecccccCccee-EEeecCcccc
Q psy5413         234 CQEHNIPVHMDGARL-PL---AEVCASVDTVMFCLSKGLGAPVG-SILAGPEEFI  283 (285)
Q Consensus       234 a~~~gi~li~Dea~~-~~---~~~~~~~dv~~~s~sK~l~~p~g-g~~~~~~~~i  283 (285)
                      |+++|+++++|++|. +.   .....++|+++.++|||+++|.| |+++.+++++
T Consensus       150 a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~  204 (356)
T cd06451         150 AKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERAL  204 (356)
T ss_pred             HHhcCCEEEEeeehhccCccccccccCccEEEecCchhccCCCCcceeEECHHHH
Confidence            999999999999976 22   11224679999999999998644 7887777665

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.84  E-value=7.1e-20  Score=166.61  Aligned_cols=178  Identities=19%  Similarity=0.249  Sum_probs=139.6

Q ss_pred             CcHHHHHHHHhcccCCCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeec
Q psy5413          79 PTMEMKNYMFNCEVGDDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWE  156 (285)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~  156 (285)
                      ...+-.+++.+.......|+  .+|...+||+.++++.|.+.++.++||++|+.+++.+++ ++||+||++...|..+..
T Consensus        37 ~~~~~~~~~~~~~~~g~~ysR~~nPtv~~lE~~la~leg~~~av~~~SG~aAi~~al~all-~~GD~VI~~~~~Y~~T~~  115 (432)
T PRK06702         37 DTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGAVATASGQAAIMLAVLNIC-SSGDHLLCSSTVYGGTFN  115 (432)
T ss_pred             CCHHHHHHHHhccccCceeECCCCcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhc-CCCCEEEECCCchHHHHH
Confidence            34444454444333233353  468899999999999999999999999999999999876 699999998877765543


Q ss_pred             cccc-ccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHH
Q psy5413         157 QGGA-SQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQ  235 (285)
Q Consensus       157 ~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~  235 (285)
                      .... .      ...|+++..+..    .+|+++++++|++       +|++|++++|.||+ +.+.|   +++|+++|+
T Consensus       116 ~~~~~l------~~~Gi~v~~vd~----~~d~~~l~~~I~~-------~Tk~I~~e~pgnP~-~~v~D---i~~I~~iA~  174 (432)
T PRK06702        116 LFGVSL------RKLGIDVTFFNP----NLTADEIVALAND-------KTKLVYAESLGNPA-MNVLN---FKEFSDAAK  174 (432)
T ss_pred             HHHHHH------HHCCCEEEEECC----CCCHHHHHHhCCc-------CCeEEEEEcCCCcc-ccccC---HHHHHHHHH
Confidence            2111 1      245777766643    3689999999988       89999999999999 99999   999999999


Q ss_pred             HcCCeEEEeCccCChh---hhcccCCeEEEecccccCc---ceeEEeec
Q psy5413         236 EHNIPVHMDGARLPLA---EVCASVDTVMFCLSKGLGA---PVGSILAG  278 (285)
Q Consensus       236 ~~gi~li~Dea~~~~~---~~~~~~dv~~~s~sK~l~~---p~gg~~~~  278 (285)
                      +||+++|+|+++....   .+..++|+++.|++|+++|   -+||+++.
T Consensus       175 ~~gi~livD~T~~tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~  223 (432)
T PRK06702        175 ELEVPFIVDNTLATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVID  223 (432)
T ss_pred             HcCCEEEEECCCCchhhCChhhcCCCEEEEccccccCCCcceeceEEEe
Confidence            9999999999987332   3346899999999999999   56777763

>PRK07036 hypothetical protein; Provisional

Probab=99.84  E-value=7.7e-20  Score=168.93  Aligned_cols=235  Identities=14%  Similarity=0.148  Sum_probs=151.4

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC---CCc--cCCh
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD---DVY--LEDP  101 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~---~~y--~~~~  101 (285)
                      |..+.++.+.+.|+..++.+++.+..|+.-                  +.++.+|+|.+|+.+++...   ..+  ..++
T Consensus        34 p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~   95 (466)
T PRK07036         34 SLVIVEAEGIYVTDADGRRYLDGIGGMWCV------------------NVGYGREEMADAIADQARRLPYYTPFGDMTNA   95 (466)
T ss_pred             CceEEeCceeEEEECCCCEEEECcccHHhh------------------cCCCCCHHHHHHHHHHHHhCcccccccccCCH
Confidence            556667777777776555544444443332                  34779999999999887631   122  3466


Q ss_pred             hHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCC-eEEe-cCCcceeeecccccccccccccccc
Q psy5413         102 TCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDS-EIIV-GDCSHIMLWEQGGASQTSVYSQIGR  171 (285)
Q Consensus       102 ~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g  171 (285)
                      ...++.++|++...  .+.++|++|||+|++.|++++...      +++ +|+. ...||+.+.....+...+.+...++
T Consensus        96 ~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~  175 (466)
T PRK07036         96 PAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFD  175 (466)
T ss_pred             HHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCccccccc
Confidence            78899999998864  467899999999999999998533      223 3443 5788987743322221111211111


Q ss_pred             ---eeeeeeecCCC----CCC--------CHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH
Q psy5413         172 ---VLMRGVTNQKD----GTF--------DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE  236 (285)
Q Consensus       172 ---~~~~~~~~~~~----~~~--------d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~  236 (285)
                         ..+..++.+..    ...        .++.+++.+..   .+.+++++|++|++++..|....|++++++|+++|++
T Consensus       176 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~  252 (466)
T PRK07036        176 YASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILS---LGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRR  252 (466)
T ss_pred             CCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHH---cCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHH
Confidence               11222222110    001        13445555542   1345899999999998886667789999999999999


Q ss_pred             cCCeEEEeCccCCh-----hhhcc-cCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413         237 HNIPVHMDGARLPL-----AEVCA-SVDTV--MFCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       237 ~gi~li~Dea~~~~-----~~~~~-~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                      ||+++|+||+++++     ....+ +.++.  +.+++|++++   |+|+++.+ ++++
T Consensus       253 ~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~-~~i~  309 (466)
T PRK07036        253 YDILYISDEVVTGFGRLGHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIIS-ERLL  309 (466)
T ss_pred             cCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEEEccccccCccccEEEEEc-HHHH
Confidence            99999999998744     22223 44444  6777899987   77877754 5443

>PLN02483 serine palmitoyltransferase

Probab=99.84  E-value=4.2e-20  Score=171.79  Aligned_cols=201  Identities=22%  Similarity=0.221  Sum_probs=150.4

Q ss_pred             cCCeeeeeccCCcCC---Cc----HHHHHHHHhcccC--C--CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHH
Q psy5413          64 VNIRTVDIRSDTISK---PT----MEMKNYMFNCEVG--D--DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIA  132 (285)
Q Consensus        64 ~~~~~~~~~~~~~~~---~~----~~v~~a~~~~~~~--~--~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~a  132 (285)
                      .+++.++|++.++-+   ++    +.+.+++.+...+  .  ..|+..+.+.++|+.+++++|.+..+++++|+.++..+
T Consensus        98 ~~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~ai~~~~G~~an~~~  177 (489)
T PLN02483         98 KTRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYATNSTI  177 (489)
T ss_pred             CCceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHH
Confidence            357889999887766   22    4666666655432  2  23677888999999999999999898889999999988


Q ss_pred             HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhccc-----ccccCCceE-
Q psy5413         133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTA-----DNIHCASTS-  206 (285)
Q Consensus       133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~-----~~~~~~~~~-  206 (285)
                      +.+++ ++||.|++++++|.+......         ..|.+++.++..     |++++++.+++.     .+.|.+..+ 
T Consensus       178 i~al~-~~Gd~Vi~d~~~h~s~~~~~~---------~~Ga~v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~  242 (489)
T PLN02483        178 IPALI-GKGGLIISDSLNHNSIVNGAR---------GSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTHRPWKKI  242 (489)
T ss_pred             HHHhC-CCCCEEEEcchhhHHHHHHHH---------HcCCeEEEEeCC-----CHHHHHHHHHhhhhccccccccCCceE
Confidence            88876 699999999999987655333         348888888753     567777666431     111111224 


Q ss_pred             EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Ch--------hhh----cccCCeEEEecccccCccee
Q psy5413         207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PL--------AEV----CASVDTVMFCLSKGLGAPVG  273 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~--------~~~----~~~~dv~~~s~sK~l~~p~g  273 (285)
                      +|+++++.+++ |.+.+   +++|+++|++||+++|+||+|+ +.        ...    ..+.|+++.|+||++++ .|
T Consensus       243 livve~v~s~~-G~~~~---l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~-~G  317 (489)
T PLN02483        243 IVIVEGIYSME-GELCK---LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGS-CG  317 (489)
T ss_pred             EEEECCCCCCC-CcccC---HHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhccc-Cc
Confidence            66777788888 89999   9999999999999999999986 11        111    13568889999999986 68


Q ss_pred             EEeecCccccc
Q psy5413         274 SILAGPEEFIQ  284 (285)
Q Consensus       274 g~~~~~~~~i~  284 (285)
                      |++++++++++
T Consensus       318 G~i~~~~~li~  328 (489)
T PLN02483        318 GYIAGSKELIQ  328 (489)
T ss_pred             eEEEcCHHHHH
Confidence            99999888765

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.84  E-value=4.3e-20  Score=167.58  Aligned_cols=163  Identities=18%  Similarity=0.181  Sum_probs=133.3

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|...++|+.+++++|.+.++.++||++|+..++.+++ ++||+|+++.+.|..+.... ...      ...|+++..+
T Consensus        62 ~~p~~~~le~~lA~l~g~~~~i~~ssG~~Ai~~~l~all-~~GD~Vi~~~~~y~~~~~~~~~~~------~~~Gi~v~~v  134 (398)
T PRK08249         62 TNPTVQAFEEKVRILEGAEAATAFSTGMAAISNTLYTFL-KPGDRVVSIKDTYGGTNKIFTEFL------PRMGVDVTLC  134 (398)
T ss_pred             CChHHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHH------hhCCeEEEEc
Confidence            678899999999999999999999999999999998876 68999999888775432111 111      2347776655


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---hhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---EVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---~~~  254 (285)
                      +.     .|+++++++|++       ++++|++++|+||+ |.+.|   +++|+++|+++|+++|+|+++....   .+.
T Consensus       135 d~-----~d~e~l~~~i~~-------~tklV~ie~p~NPt-g~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~~l~  198 (398)
T PRK08249        135 ET-----GDHEQIEAEIAK-------GCDLLYLETPTNPT-LKIVD---IERLAAAAKKVGALVVVDNTFATPINQNPLA  198 (398)
T ss_pred             CC-----CCHHHHHHhcCC-------CCeEEEEECCCCCC-CccCC---HHHHHHHHHHcCCEEEEECCcCccccCCchh
Confidence            43     489999999987       78999999999999 99999   9999999999999999999988321   233


Q ss_pred             ccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413         255 ASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ  284 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~  284 (285)
                      .++|+++.|++|++++   .+||++++++++++
T Consensus       199 ~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~  231 (398)
T PRK08249        199 LGADLVIHSATKFLSGHADALGGVVCGSKELME  231 (398)
T ss_pred             hCCCEEeccCceecCCCCCceEEEEECCHHHHH
Confidence            5789999999999987   36888988887654

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.84  E-value=9.4e-20  Score=166.20  Aligned_cols=203  Identities=20%  Similarity=0.246  Sum_probs=152.6

Q ss_pred             CCeeeeeccCCcCCCcHHHHHHHHhcccC---CCC---cc----CChhHHHHHHHHHhHcCCC---cEEEcCChHHHHHH
Q psy5413          65 NIRTVDIRSDTISKPTMEMKNYMFNCEVG---DDV---YL----EDPTCKELQEKAAKLAGKE---AAIFVPSGTMGNLI  131 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~---~~~---y~----~~~~~~~l~~~la~~~g~~---~~~~~~~Gs~a~~~  131 (285)
                      |+.++.|.....+..++.+.+++.+....   ...   +.    ......++++.+++++|.+   .+++++|+++++..
T Consensus        16 ~~~~~yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~   95 (403)
T TIGR01979        16 GKPLVYLDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINL   95 (403)
T ss_pred             CCceEEEeCccccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHH
Confidence            45678888888887788999998765432   111   10    1124678999999999976   46899999999888


Q ss_pred             HHHHcc---ccCCCeEEecCCcceeeecc-cccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEE
Q psy5413         132 AIMTHC---DRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       132 al~~~~---~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                      ++.++.   .++|++|++++..|.+.... ....      ...|.+++.++.++++.+|++++++.+++       ++++
T Consensus        96 ~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~------~~~g~~~~~v~~~~~~~~~~~~l~~~i~~-------~~~l  162 (403)
T TIGR01979        96 VAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLA------ERTGATLKFIPLDDDGTLDLDDLEKLLTE-------KTKL  162 (403)
T ss_pred             HHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHH------HhcCcEEEEEecCCCCCCCHHHHHHHhcc-------CCeE
Confidence            887641   25789999988877653211 1122      34588888888877788999999999987       7999


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCcceeEEeecCcccc
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFI  283 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i  283 (285)
                      |++++++|++ |.++|   +++|.++|++||+++|+|++|+ +   ......+.|+++.|+||++|.+..|++..+++++
T Consensus       163 v~~~~~~~~t-G~~~~---~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~g~l~~~~~~~  238 (403)
T TIGR01979       163 VAITHVSNVL-GTVNP---VEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELL  238 (403)
T ss_pred             EEEEcccccc-cccCC---HHHHHHHHHHcCCEEEEEchhhcCccccCccccCCCEEEEecccccCCCCceEEEEchHHH
Confidence            9999999999 99999   9999999999999999999987 2   1112246899999999987643337777776654


Q ss_pred             c
Q psy5413         284 Q  284 (285)
Q Consensus       284 ~  284 (285)
                      +
T Consensus       239 ~  239 (403)
T TIGR01979       239 E  239 (403)
T ss_pred             h
Confidence            3

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.84  E-value=2.6e-20  Score=166.38  Aligned_cols=195  Identities=23%  Similarity=0.257  Sum_probs=147.1

Q ss_pred             eeeeeccCCc-CCC-cHHHHHHHHhcccCC-C-------CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHc
Q psy5413          67 RTVDIRSDTI-SKP-TMEMKNYMFNCEVGD-D-------VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        67 ~~~~~~~~~~-~~~-~~~v~~a~~~~~~~~-~-------~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~  136 (285)
                      +++.|.+..+ +.+ ||++.+++++..... .       .++..+...++++.++++++.+..+++++|++++.+++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~~~   81 (349)
T cd06454           2 KVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTL   81 (349)
T ss_pred             CceecccCCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHHHh
Confidence            4566665443 444 789999998877521 1       12456778999999999999988899999999999998887


Q ss_pred             cccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCC
Q psy5413         137 CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNY  216 (285)
Q Consensus       137 ~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~  216 (285)
                      + ++||+|++++++|.......         ...|.+++.++.     .|.+++++.+++..  +..++++|++++++|+
T Consensus        82 ~-~~gd~Vl~~~~~~~~~~~~~---------~~~g~~~~~~~~-----~~~~~le~~i~~~~--~~~~~~~v~~~~~~~~  144 (349)
T cd06454          82 A-GKGDLIISDSLNHASIIDGI---------RLSGAKKRIFKH-----NDMEDLEKLLREAR--RPYGKKLIVTEGVYSM  144 (349)
T ss_pred             c-CCCCEEEEehhhhHHHHHHH---------HHcCCceEEecC-----CCHHHHHHHHHHhh--ccCCCeEEEEeccccC
Confidence            6 68999999988886654322         233677766653     47888999887521  1236789999999999


Q ss_pred             CCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhh-----------hcccCCeEEEecccccCcceeEEeecCcccc
Q psy5413         217 CGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAE-----------VCASVDTVMFCLSKGLGAPVGSILAGPEEFI  283 (285)
Q Consensus       217 ~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~-----------~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i  283 (285)
                      + |.+.|   +++|+++|++||+++|+||+|. +...           ...+.|+++.|+||++++ .||+++.+++++
T Consensus       145 t-G~~~~---~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~gG~i~~~~~~~  218 (349)
T cd06454         145 D-GDIAP---LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA-VGGYIAGSKELI  218 (349)
T ss_pred             C-CCccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcc-cCCEEECCHHHH
Confidence            9 88888   9999999999999999999986 2110           123567889999999987 578888877764

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.84  E-value=5.5e-20  Score=167.37  Aligned_cols=199  Identities=18%  Similarity=0.189  Sum_probs=150.0

Q ss_pred             eeeeccCCcCCCcHHHHHHHHhcccCC-----CCccC----ChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHc
Q psy5413          68 TVDIRSDTISKPTMEMKNYMFNCEVGD-----DVYLE----DPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        68 ~~~~~~~~~~~~~~~v~~a~~~~~~~~-----~~y~~----~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~  136 (285)
                      .+.|.+...+.+++.+++++.+.....     ..|..    .+...++++.+++++|.+.  +++++|+++++..++.++
T Consensus        18 ~~yl~~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~   97 (397)
T TIGR01976        18 RVFFDNPAGTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAI   97 (397)
T ss_pred             eEEecCCccCCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHH
Confidence            477777777778889999987765321     12321    2346799999999998753  688888899887766654


Q ss_pred             --cccCCCeEEecCCcceeeecc-cccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         137 --CDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       137 --~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                        ..++|++|++.++.|.+.... ...+      ...|.+++.++.++ ++.+|++++++++++       ++++|++++
T Consensus        98 ~~~~~~gd~vl~~~~~~~s~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~-------~~~lv~i~~  164 (397)
T TIGR01976        98 SRRWGPGDEVIVTRLDHEANISPWLQAA------ERAGAKVKWARVDEATGELHPDDLASLLSP-------RTRLVAVTA  164 (397)
T ss_pred             HhcCCCCCEEEEcCCchHhHHHHHHHHH------HhcCCEEEEEeccccCCCcCHHHHHHhcCC-------CceEEEEeC
Confidence              225899999988877554311 1122      34588888887754 577899999999977       789999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C--hhhh-cccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P--LAEV-CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~--~~~~-~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      |+|++ |.+.|   +++|+++|++||+++|+|+++. +  .... ..++|++++|+|||+|. ..|+++.++++++
T Consensus       165 ~~n~t-G~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~-~~G~l~~~~~~~~  235 (397)
T TIGR01976       165 ASNTL-GSIVD---LAAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFFGP-HMGILWGRPELLM  235 (397)
T ss_pred             CCCCC-CccCC---HHHHHHHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechhhcCC-ceEEEEEcHHHHh
Confidence            99999 89999   9999999999999999999987 1  1122 24789999999999864 5778877777654

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.84  E-value=6.5e-20  Score=167.66  Aligned_cols=160  Identities=20%  Similarity=0.243  Sum_probs=128.9

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecc-cccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|...+|++.+++++|.+.+++++||++|+..++.+++ ++|++|++.+..|..+... ....      ...|.+++.+
T Consensus        55 ~~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~-~~Gd~Vl~~~~~y~~t~~~~~~~~------~~~G~~v~~v  127 (418)
T TIGR01326        55 MNPTTDVLEQRIAALEGGVAALAVASGQAAITYAILNLA-QAGDNIVSSSYLYGGTYNLFKHTL------KRLGIEVRFV  127 (418)
T ss_pred             CChhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHh-CCCCEEEEECCCcHHHHHHHHHHH------HHcCcEEEEE
Confidence            567799999999999999989999999999999998877 5899998877655332211 0111      2457787777


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~  254 (285)
                      +..     |++++++++++       ++++|++++|+||+ |.+.|   +++|+++|+++|+++|+|++++..   ..+.
T Consensus       128 ~~~-----d~~~l~~~l~~-------~t~~V~le~p~NPt-g~v~d---l~~I~~la~~~~i~livD~t~~~~~~~~~l~  191 (418)
T TIGR01326       128 DPD-----DPEEFEKAIDE-------NTKAVFAETIGNPA-INVPD---IEAIAEVAHAHGVPLIVDNTFATPYLCRPID  191 (418)
T ss_pred             CCC-----CHHHHHHhcCc-------CCeEEEEECCCCCC-CeecC---HHHHHHHHHHcCCEEEEECCCchhhcCCchh
Confidence            642     89999999987       78999999999999 89999   999999999999999999998722   1223


Q ss_pred             ccCCeEEEecccccCc---ceeEEeecCcc
Q psy5413         255 ASVDTVMFCLSKGLGA---PVGSILAGPEE  281 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~  281 (285)
                      .++|+++.|++|++++   .+||+++.+++
T Consensus       192 ~g~Divv~S~sK~l~g~G~~lGg~v~~~~~  221 (418)
T TIGR01326       192 HGADIVVHSATKYIGGHGTAIGGVIVDGGK  221 (418)
T ss_pred             cCCeEEEECccccccCCccceEEEEEeccc
Confidence            4689999999999987   57887776544

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.84  E-value=8.6e-20  Score=164.85  Aligned_cols=186  Identities=20%  Similarity=0.217  Sum_probs=141.7

Q ss_pred             CCcHHHHHHHHhcccCC---CC---ccC----ChhHHHHHHHHHhHcCCC---cEEEcCChHHHHHHHHHHccccCCCeE
Q psy5413          78 KPTMEMKNYMFNCEVGD---DV---YLE----DPTCKELQEKAAKLAGKE---AAIFVPSGTMGNLIAIMTHCDRRDSEI  144 (285)
Q Consensus        78 ~~~~~v~~a~~~~~~~~---~~---y~~----~~~~~~l~~~la~~~g~~---~~~~~~~Gs~a~~~al~~~~~~~g~~v  144 (285)
                      .+++.+.+++.+.....   ..   |..    .+...++++.+++++|.+   .+++++|+++++..++...+ ++|++|
T Consensus        11 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~-~~gd~v   89 (376)
T TIGR01977        11 PKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLL-KEGDHV   89 (376)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhcc-CCCCEE
Confidence            35568888877654421   11   211    255789999999999864   35888999999999998866 589999


Q ss_pred             EecCCcceeeecc-cccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCC
Q psy5413         145 IVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLP  223 (285)
Q Consensus       145 i~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~  223 (285)
                      +++...|...... ....      +..|.+++.++.++++.+|++++++++++       ++++|++++++|++ |.++|
T Consensus        90 l~~~~~~~~~~~~~~~~~------~~~g~~~~~v~~~~~~~~d~~~l~~~~~~-------~~~~v~~~~~~n~t-G~~~~  155 (376)
T TIGR01977        90 ITTPMEHNSVARPLECLK------EQIGVEITIVKCDNEGLISPERIKRAIKT-------NTKLIVVSHASNVT-GTILP  155 (376)
T ss_pred             EECcchhhHHHHHHHHHH------HHcCcEEEEEecCCCCCcCHHHHHHhcCC-------CCeEEEEECCCCCc-cccCC
Confidence            9988777554221 1122      34488888888767778899999999976       78999999999999 99999


Q ss_pred             HHHHHHHHHHHHHcCCeEEEeCccC-Ch---hhhcccCCeEEEecccccCccee--EEeecCcc
Q psy5413         224 MQWLRELKARCQEHNIPVHMDGARL-PL---AEVCASVDTVMFCLSKGLGAPVG--SILAGPEE  281 (285)
Q Consensus       224 ~~~l~~i~~la~~~gi~li~Dea~~-~~---~~~~~~~dv~~~s~sK~l~~p~g--g~~~~~~~  281 (285)
                         +++|.++|+++|+++|+|++++ +.   .....++|+++++++||+++|.|  ++++.++.
T Consensus       156 ---~~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~  216 (376)
T TIGR01977       156 ---IEEIGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGI  216 (376)
T ss_pred             ---HHHHHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEecccccccCCCCceEEEEcCCc
Confidence               8999999999999999999987 22   22236899999999999988643  55555543

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.84  E-value=4.5e-20  Score=167.79  Aligned_cols=200  Identities=22%  Similarity=0.228  Sum_probs=149.3

Q ss_pred             CCeeeeeccCC-cCC-CcHHHHHHHHhcccC-CCC-------ccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDT-ISK-PTMEMKNYMFNCEVG-DDV-------YLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~-~~~-~~~~v~~a~~~~~~~-~~~-------y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~  134 (285)
                      |+++++|..+. ++. ++|++.+++.+.... ...       .+..+...++++.+++++|.+..+++++|++++..+++
T Consensus        41 g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~~~~i~~tsG~~a~~~~~~  120 (397)
T PRK06939         41 GKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGTEDAILYSSCFDANGGLFE  120 (397)
T ss_pred             CCeEEEeeccCccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCCCcEEEEcChHHHHHHHHH
Confidence            77889999776 455 577899988876542 111       13345677899999999998878888889999999998


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      +++ ++||+|++++++|........         ..+.+++.++.     .|++++++.+++... ...++++|++++++
T Consensus       121 ~l~-~~gd~vi~~~~~~~~~~~~~~---------~~~~~~~~~~~-----~d~~~l~~~i~~~~~-~~~~~~~v~~~~v~  184 (397)
T PRK06939        121 TLL-GKEDAIISDALNHASIIDGVR---------LCKAKRYRYAN-----NDMADLEAQLKEAKE-AGARHKLIATDGVF  184 (397)
T ss_pred             HhC-CCCCEEEEEhhhhHHHHHHHH---------hcCCceEEeCC-----CCHHHHHHHHHhhhc-cCCCCeEEEEecCc
Confidence            876 699999999998866543222         22555555543     488999988864211 12267899988889


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh--------h---hcccCCeEEEecccccCcceeEEeecCccc
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA--------E---VCASVDTVMFCLSKGLGAPVGSILAGPEEF  282 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~--------~---~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~  282 (285)
                      |++ |.+.+   +++|.++|++||+++|+||+|. +..        .   +....|+++.|+||+++++++|++++++++
T Consensus       185 ~~~-G~~~~---~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r~G~v~~~~~~  260 (397)
T PRK06939        185 SMD-GDIAP---LPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGASGGYTAGRKEV  260 (397)
T ss_pred             CCC-CCcCC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccCceEEEeCHHH
Confidence            988 77777   9999999999999999999985 211        1   112457889999999977789999988776


Q ss_pred             cc
Q psy5413         283 IQ  284 (285)
Q Consensus       283 i~  284 (285)
                      ++
T Consensus       261 ~~  262 (397)
T PRK06939        261 ID  262 (397)
T ss_pred             HH
Confidence            54

>PRK14012 cysteine desulfurase; Provisional

Probab=99.84  E-value=1e-19  Score=166.02  Aligned_cols=195  Identities=18%  Similarity=0.283  Sum_probs=145.2

Q ss_pred             eeeccCCcCCCcHHHHHHHHhccc--C---CCC-------ccCChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHH
Q psy5413          69 VDIRSDTISKPTMEMKNYMFNCEV--G---DDV-------YLEDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIM  134 (285)
Q Consensus        69 ~~~~~~~~~~~~~~v~~a~~~~~~--~---~~~-------y~~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~  134 (285)
                      +.|.+...+..++.+.+++.+...  .   ...       +...+...++++.+++++|.+.  +++++||++|+..++.
T Consensus         5 iyld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~   84 (404)
T PRK14012          5 IYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESDNLAIK   84 (404)
T ss_pred             EEecCcCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHH
Confidence            566666666678899999876543  1   110       1112457788999999999754  7899999999999987


Q ss_pred             Hcc---ccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413         135 THC---DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVE  211 (285)
Q Consensus       135 ~~~---~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~  211 (285)
                      ++.   .++|++|++++..|.+........      ...|.+++.++.++++.+|+++|+++|++       ++++|+++
T Consensus        85 ~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~------~~~g~~~~~v~~~~~g~~d~~~l~~~i~~-------~t~lv~~~  151 (404)
T PRK14012         85 GAAHFYQKKGKHIITSKTEHKAVLDTCRQL------EREGFEVTYLDPQSNGIIDLEKLEAAMRD-------DTILVSIM  151 (404)
T ss_pred             HHHHhhcCCCCEEEEecCccHHHHHHHHHH------HhCCCEEEEEccCCCCcCCHHHHHHhcCC-------CCEEEEEE
Confidence            754   257899999888885543211111      22478888888777788999999999987       78999999


Q ss_pred             cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh---hhcccCCeEEEecccccCcc-eeEEeecCc
Q psy5413         212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA---EVCASVDTVMFCLSKGLGAP-VGSILAGPE  280 (285)
Q Consensus       212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~---~~~~~~dv~~~s~sK~l~~p-~gg~~~~~~  280 (285)
                      +++|++ |.++|   +++|.++|+++|+++|+|++++ +..   ....++|+++++++|.++.+ .|++++.++
T Consensus       152 ~~~n~t-G~~~~---~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g~G~l~~~~~  221 (404)
T PRK14012        152 HVNNEI-GVIQD---IAAIGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIYGPKGIGALYVRRK  221 (404)
T ss_pred             CcCCCc-cchhh---HHHHHHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhccCCCceEEEEEecC
Confidence            999999 99999   9999999999999999999987 211   12246899999999977642 344444443

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.84  E-value=5.7e-20  Score=168.05  Aligned_cols=214  Identities=21%  Similarity=0.219  Sum_probs=146.0

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCCCCcc----CChhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGDDVYL----EDPTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~~y~----~~~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~  134 (285)
                      |++++||.++    ..++.+|++.+++.+++.....|.    ..+...++++.++++++  .+.+++++||++|++.+++
T Consensus        35 G~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~  114 (413)
T cd00610          35 GNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALK  114 (413)
T ss_pred             CCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcCccCcccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHH
Confidence            6778888764    234589999999988775333222    36779999999999998  6778999999999999999


Q ss_pred             Hccc-cCCCeEEe-cCCcceeeeccccccccccccc---ccceeeeeeecCC------CCCCCHHHHHHHhcccccccCC
Q psy5413         135 THCD-RRDSEIIV-GDCSHIMLWEQGGASQTSVYSQ---IGRVLMRGVTNQK------DGTFDLDEMEAKFSTADNIHCA  203 (285)
Q Consensus       135 ~~~~-~~g~~vi~-~~~~h~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~------~~~~d~~~l~~~i~~~~~~~~~  203 (285)
                      ++.. ..++.|++ ...+|++............+..   .....++.+|.++      +...|+++|++.+++    +.+
T Consensus       115 ~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~----~~~  190 (413)
T cd00610         115 LARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEE----HPE  190 (413)
T ss_pred             HHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhc----CCC
Confidence            8753 24566666 4567876543222220010111   1123345555532      123488999999876    334


Q ss_pred             ceEEEEEecccCCCCeee-CCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCCeE--EEecccccCc--cee
Q psy5413         204 STSLVCVENTHNYCGGTV-LPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVDTV--MFCLSKGLGA--PVG  273 (285)
Q Consensus       204 ~~~~v~i~~~~n~~gG~~-~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~--p~g  273 (285)
                      ++++|++++.++++ |.+ .+.+++++|+++|++||+++|+||+|+++.     ......++.  +.+++|++++  |.|
T Consensus       191 ~~~~vi~~p~~~~~-G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~~t~sK~l~~g~~~g  269 (413)
T cd00610         191 EVAAVIVEPIQGEG-GVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLGKGLGGGLPLG  269 (413)
T ss_pred             CEEEEEEccccCCC-CCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCeEEEcccccCccccE
Confidence            78999999998888 554 578889999999999999999999988431     111222221  5678899987  555


Q ss_pred             EEeecCccccc
Q psy5413         274 SILAGPEEFIQ  284 (285)
Q Consensus       274 g~~~~~~~~i~  284 (285)
                      + +++++++++
T Consensus       270 ~-~~~~~~~~~  279 (413)
T cd00610         270 A-VLGREEIMD  279 (413)
T ss_pred             E-EEEcHHHHH
Confidence            5 556676654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.84  E-value=1.1e-19  Score=166.22  Aligned_cols=159  Identities=21%  Similarity=0.265  Sum_probs=131.4

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|....|++.++++.|.+.+++++||++|+..++..++ ++||+|+++++.|..+.... ...      ...|.+++.+
T Consensus        62 ~~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll-~~GD~Vlv~~~~y~~t~~~~~~~~------~~~Gv~v~~v  134 (431)
T PRK08248         62 MNPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIA-SAGDEIVSSSSLYGGTYNLFAHTL------PKLGITVKFV  134 (431)
T ss_pred             CCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEccCchhhHHHHHHHHH------HhCCEEEEEE
Confidence            578899999999999999999999999999999998876 69999999887664432211 112      3458888888


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC---hhhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP---LAEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~---~~~~~  254 (285)
                      +.     .|+++++++|++       ++++|++++|+||+ |.+.|   +++|+++|+++|+++|+|++++.   ...+.
T Consensus       135 d~-----~d~e~l~~ai~~-------~tklV~l~sp~NPt-G~v~d---i~~I~~la~~~gi~vIvD~t~a~~~~~~pl~  198 (431)
T PRK08248        135 DP-----SDPENFEAAITD-------KTKALFAETIGNPK-GDVLD---IEAVAAIAHEHGIPLIVDNTFASPYLLRPIE  198 (431)
T ss_pred             CC-----CCHHHHHHhcCC-------CCeEEEEECCCCCC-CcccC---HHHHHHHHHHcCCEEEEeCCCCccccCChhH
Confidence            75     389999999987       78999999999999 99999   99999999999999999999872   22234


Q ss_pred             ccCCeEEEecccccCc---ceeEEeecCc
Q psy5413         255 ASVDTVMFCLSKGLGA---PVGSILAGPE  280 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~  280 (285)
                      .++|+++.|++|++++   .+||+++.+.
T Consensus       199 ~gaDivv~S~tK~lgg~g~~~Gg~v~~~~  227 (431)
T PRK08248        199 HGADIVVHSATKFIGGHGTSIGGVIVDSG  227 (431)
T ss_pred             cCCCEEEEcCccccCCCCCceEEEEEeCC
Confidence            6899999999999998   4788777543

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.84  E-value=2.3e-20  Score=168.06  Aligned_cols=163  Identities=12%  Similarity=0.061  Sum_probs=129.6

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|....||+.++++.|.+.+++++||++|+..++.+++ ++||+|+++++.|..+.... ...      ...|.++..+
T Consensus        48 gnPt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all-~~GD~Vl~~~~~y~~t~~~~~~~~------~~~gi~v~~~  120 (377)
T TIGR01324        48 GTLTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFV-KAGDHVLMVDSAYEPTRYFCDIVL------KRMGVDITYY  120 (377)
T ss_pred             CCccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhc-CCCCEEEEcCCCcHHHHHHHHHHH------HhcCcEEEEE
Confidence            568899999999999999999999999999999999876 69999998776654332211 111      2346666555


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Ch--hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PL--AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~--~~~~  254 (285)
                      +..     +.+++++++++       ++++|++++|+|++ |.+.+   |++|+++|+++|+++|+|++|+ +.  ..+.
T Consensus       121 d~~-----~~e~l~~~i~~-------~tklV~lesp~Np~-g~~~d---l~~I~~la~~~g~~livD~t~a~g~~~~pl~  184 (377)
T TIGR01324       121 DPL-----IGEDIATLIQP-------NTKVLFLEAPSSIT-FEIQD---IPAIAKAARNPGIVIMIDNTWAAGLLFKPLE  184 (377)
T ss_pred             CCC-----CHHHHHHhcCC-------CceEEEEECCCCCC-CcHHH---HHHHHHHHHHcCCEEEEECCCccccccCccc
Confidence            331     33789999887       89999999999998 88888   9999999999999999999988 22  2445


Q ss_pred             ccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413         255 ASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ  284 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~  284 (285)
                      .++|+++.|++|+++|   ..||+++++++.++
T Consensus       185 ~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~  217 (377)
T TIGR01324       185 HGVDISIQAGTKYLVGHSDIMIGTVVANARTWD  217 (377)
T ss_pred             cCceEEEecCceeccCCCCceEEEEEeCHHHHH
Confidence            6899999999999998   46788888776543

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.84  E-value=6.3e-20  Score=170.87  Aligned_cols=192  Identities=15%  Similarity=0.133  Sum_probs=140.2

Q ss_pred             HHHHHHHhccc----CCCCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHHHHHHHHccccCCCeEEecCC
Q psy5413          82 EMKNYMFNCEV----GDDVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDC  149 (285)
Q Consensus        82 ~v~~a~~~~~~----~~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~  149 (285)
                      .+++++.+...    +...|+...+..+|++.++++++        .+.+++++|+++|+..++++++..+||+|+++.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P  171 (481)
T PTZ00377         92 DVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIP  171 (481)
T ss_pred             HHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCC
Confidence            56666554322    12457777778999999999864        2346899999999999999876348999999988


Q ss_pred             cceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHH
Q psy5413         150 SHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWL  227 (285)
Q Consensus       150 ~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l  227 (285)
                      +|.......         ...|.+++.++.++  ++.+|+++|++++++..+ .+.++++|++++|+||| |.+++.+++
T Consensus       172 ~y~~y~~~~---------~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~-~~~~~k~l~l~~P~NPT-G~~~s~e~~  240 (481)
T PTZ00377        172 QYPLYSAAI---------TLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVR-NGITPRALVVINPGNPT-GQVLTRDVM  240 (481)
T ss_pred             CchhHHHHH---------HHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHh-cCCCeeEEEEECCCCCC-CcCCCHHHH
Confidence            875543322         24488888888753  356899999999864211 12368999999999999 999999999


Q ss_pred             HHHHHHHHHcCCeEEEeCccCChh-----------h----hcccC----CeE-EEeccccc-C--cceeEEeec---Ccc
Q psy5413         228 RELKARCQEHNIPVHMDGARLPLA-----------E----VCASV----DTV-MFCLSKGL-G--APVGSILAG---PEE  281 (285)
Q Consensus       228 ~~i~~la~~~gi~li~Dea~~~~~-----------~----~~~~~----dv~-~~s~sK~l-~--~p~gg~~~~---~~~  281 (285)
                      ++|+++|++||+++|+||+|..+.           .    +....    .++ +.|+||.+ +  |.+.|+++.   +++
T Consensus       241 ~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~  320 (481)
T PTZ00377        241 EEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPE  320 (481)
T ss_pred             HHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHH
Confidence            999999999999999999976211           0    01111    244 78999974 3  577888774   676


Q ss_pred             ccc
Q psy5413         282 FIQ  284 (285)
Q Consensus       282 ~i~  284 (285)
                      +++
T Consensus       321 li~  323 (481)
T PTZ00377        321 VRE  323 (481)
T ss_pred             HHH
Confidence            654

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.84  E-value=1.1e-19  Score=163.01  Aligned_cols=193  Identities=18%  Similarity=0.217  Sum_probs=141.0

Q ss_pred             cCCcCCCcHHHHHHHHhcccC---C-C--Cc--c--CChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccc--
Q psy5413          73 SDTISKPTMEMKNYMFNCEVG---D-D--VY--L--EDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCD--  138 (285)
Q Consensus        73 ~~~~~~~~~~v~~a~~~~~~~---~-~--~y--~--~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~--  138 (285)
                      +...+..++.+++++.+....   . .  .+  +  ......++++.+++++|.+  .++|++|+++++..++.++..  
T Consensus         4 ~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~   83 (353)
T TIGR03235         4 HNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAG   83 (353)
T ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhc
Confidence            334455678899998765421   1 1  11  1  1134678999999999875  468888899999999887652  


Q ss_pred             -cCC-CeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCC
Q psy5413         139 -RRD-SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNY  216 (285)
Q Consensus       139 -~~g-~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~  216 (285)
                       .+| +.|++....|.+........      ...|.+++.++.++++.+|++++++++++       ++++|++++++|+
T Consensus        84 ~~~g~~~vi~~~~~~~s~~~~~~~~------~~~G~~v~~v~~~~~~~~d~~~l~~~l~~-------~~~lv~~~~~~n~  150 (353)
T TIGR03235        84 EQKGKKHIITSAIEHPAVLEPIRAL------ERNGFTVTYLPVDESGRIDVDELADAIRP-------DTLLVSIMHVNNE  150 (353)
T ss_pred             ccCCCCeeeEcccccHHHHHHHHHH------HhcCCEEEEEccCCCCcCCHHHHHHhCCC-------CCEEEEEEcccCC
Confidence             245 56787777775543321111      23488888888877788999999999976       7899999999999


Q ss_pred             CCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCcceeEEeecCccc
Q psy5413         217 CGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPVGSILAGPEEF  282 (285)
Q Consensus       217 ~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~  282 (285)
                      + |.+.|   +++|.++|+++|+++|+|++++ +   ......++|+++++++|+++.+-.|++..+++.
T Consensus       151 t-G~~~~---~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g~g~l~~~~~~  216 (353)
T TIGR03235       151 T-GSIQP---IREIAEVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKIYGPKGIGALVIRKRG  216 (353)
T ss_pred             c-eeccC---HHHHHHHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehhhcCCCCceEEEEEccCc
Confidence            9 99999   9999999999999999999977 2   222235799999999999653334666555543

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.84  E-value=1.1e-19  Score=165.22  Aligned_cols=199  Identities=18%  Similarity=0.127  Sum_probs=152.5

Q ss_pred             CeeeeeccCCcCC-CcHHHHHHHHhcccC----CCCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHHHHH
Q psy5413          66 IRTVDIRSDTISK-PTMEMKNYMFNCEVG----DDVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGNLIA  132 (285)
Q Consensus        66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~----~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~~~a  132 (285)
                      ..+++|..+++.. +.+.+.+++.+....    ...|+......++++.++++++        .+.+++++|+++++..+
T Consensus        33 ~~~~~l~~g~p~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~  112 (394)
T PRK06836         33 DNVFDFSLGNPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVA  112 (394)
T ss_pred             CCeEEecCcCCCCCCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHH
Confidence            4568998888765 456888887654432    3457666778889999999874        34468999999999999


Q ss_pred             HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC-CCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413         133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD-GTFDLDEMEAKFSTADNIHCASTSLVCVE  211 (285)
Q Consensus       133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~i~  211 (285)
                      +..++ .+|+.|+++++++.....   ..      ...|.+++.++.+++ +.+|++++++++++       ++++|+++
T Consensus       113 ~~~l~-~~gd~Vli~~p~~~~~~~---~~------~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~-------~~~~v~~~  175 (394)
T PRK06836        113 LKAIL-NPGDEVIVFAPYFVEYRF---YV------DNHGGKLVVVPTDTDTFQPDLDALEAAITP-------KTKAVIIN  175 (394)
T ss_pred             HHHhc-CCCCEEEEcCCCCccHHH---HH------HHcCCEEEEEecCCccCcCCHHHHHhhcCc-------CceEEEEe
Confidence            98877 589999998877654322   22      345889999887555 57899999999977       78999999


Q ss_pred             cccCCCCeeeCCHHHHHHHHHHHHH------cCCeEEEeCccCChh-------hhcccC--CeEEEecccccCc--ceeE
Q psy5413         212 NTHNYCGGTVLPMQWLRELKARCQE------HNIPVHMDGARLPLA-------EVCASV--DTVMFCLSKGLGA--PVGS  274 (285)
Q Consensus       212 ~~~n~~gG~~~~~~~l~~i~~la~~------~gi~li~Dea~~~~~-------~~~~~~--dv~~~s~sK~l~~--p~gg  274 (285)
                      +|+||+ |.++|.+++++|+++|++      ||+++|+||+|..+.       ......  .+++.|+||.++.  .+.|
T Consensus       176 ~p~NPt-G~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG  254 (394)
T PRK06836        176 SPNNPT-GVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIG  254 (394)
T ss_pred             CCCCCC-CcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhccCcceeeE
Confidence            999999 999999999999999999      899999999987221       111112  3458999999874  5677


Q ss_pred             EeecCccc
Q psy5413         275 ILAGPEEF  282 (285)
Q Consensus       275 ~~~~~~~~  282 (285)
                      +++.++++
T Consensus       255 ~~~~~~~~  262 (394)
T PRK06836        255 YIAVNPEM  262 (394)
T ss_pred             EEecCHHH
Confidence            78776654

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.84  E-value=1.2e-19  Score=165.54  Aligned_cols=201  Identities=15%  Similarity=0.116  Sum_probs=151.8

Q ss_pred             eeeeeccCCcCCCcHHHHHHHHhcccCCC------Cc----cCChhHHHHHHHHHhHcCC-C--cEEEcCChHHHHHHHH
Q psy5413          67 RTVDIRSDTISKPTMEMKNYMFNCEVGDD------VY----LEDPTCKELQEKAAKLAGK-E--AAIFVPSGTMGNLIAI  133 (285)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~~------~y----~~~~~~~~l~~~la~~~g~-~--~~~~~~~Gs~a~~~al  133 (285)
                      ..+.|.+...+..+..+.+++.+......      .+    .......++++.+++++|. +  .+++++|+++++..++
T Consensus        19 ~~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~   98 (401)
T PRK10874         19 AGVYLDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVA   98 (401)
T ss_pred             ceEEEeCCcccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHH
Confidence            35677777777777899999876554211      11    1123477899999999997 3  3588999999999999


Q ss_pred             HHcc---ccCCCeEEecCCcceeee-cccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413         134 MTHC---DRRDSEIIVGDCSHIMLW-EQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVC  209 (285)
Q Consensus       134 ~~~~---~~~g~~vi~~~~~h~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~  209 (285)
                      .++.   .++|++|++.++.|.+.. ......      +..|.+++.++.++++.+|++++++++++       ++++|+
T Consensus        99 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~------~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-------~t~lv~  165 (401)
T PRK10874         99 QSYARPRLQPGDEIIVSEAEHHANLVPWLMVA------QQTGAKVVKLPLGADRLPDVDLLPELITP-------RTRILA  165 (401)
T ss_pred             HHhhhccCCCcCEEEECCcchHHHHHHHHHHH------HHhCCEEEEEecCCCCcCCHHHHHHhcCc-------CcEEEE
Confidence            8873   257899999988875431 111222      34588899988877778899999999977       889999


Q ss_pred             EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----ChhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      +++++|+| |.+.|   +++|+++|+++|+++|+|++|+    .+.....++|+++.|+||.+|.+..|++..++++++
T Consensus       166 i~~~~n~t-G~~~~---~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~  240 (401)
T PRK10874        166 LGQMSNVT-GGCPD---LARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLYGPTGIGVLYGKSELLE  240 (401)
T ss_pred             EeCCcccc-cCcCC---HHHHHHHHHHcCCEEEEECCcccccccCCchhcCCCEEEEecccccCCCccEEEEEchHHHh
Confidence            99999999 89999   9999999999999999999996    111112468999999999765443478777777654

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.84  E-value=7.2e-20  Score=166.54  Aligned_cols=207  Identities=19%  Similarity=0.215  Sum_probs=137.9

Q ss_pred             CCeeeeeccCCc----CCCcHHHHHHHHhcccCC---CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcc
Q psy5413          65 NIRTVDIRSDTI----SKPTMEMKNYMFNCEVGD---DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        65 ~~~~~~~~~~~~----~~~~~~v~~a~~~~~~~~---~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~  137 (285)
                      |++++||.++.+    ++.+|++.+++.+++...   ......+...++++.++++.+.+.+++++||++|++.++++++
T Consensus        38 g~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~gg~eA~~~al~~a~  117 (396)
T PRK02627         38 GKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTSNLYYIEPQEELAEKLVELSGMDKVFFCNSGAEANEAAIKLAR  117 (396)
T ss_pred             CCEEEECCccHHhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhcCCCEEEECCCcHHHHHHHHHHHH
Confidence            566677765432    445799999998876531   1112467788999999999999999999999999999999876


Q ss_pred             ccCC------CeEEe-cCCcceeeecccccccccccccccc---eeeeeeecCCCCCCCHHHHHHHhcccccccCCceEE
Q psy5413         138 DRRD------SEIIV-GDCSHIMLWEQGGASQTSVYSQIGR---VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       138 ~~~g------~~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                      ...+      +.+++ ...+|+.............+...+.   ..+..++     ..|++++++++.+       ++++
T Consensus       118 ~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~l~~~i~~-------~~~~  185 (396)
T PRK02627        118 KYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVP-----FNDIEALKAAITD-------KTAA  185 (396)
T ss_pred             HHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeC-----CCCHHHHHHhcCC-------CeEE
Confidence            4222      34554 4566765433222210000000000   0001111     2389999999965       7999


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----hcccCCeE--EEecccccCc--ceeEEeec
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE-----VCASVDTV--MFCLSKGLGA--PVGSILAG  278 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----~~~~~dv~--~~s~sK~l~~--p~gg~~~~  278 (285)
                      |++++++|++|..+++++++++|+++|++||+++|+||+|+++..     .....++.  +.++||.+++  |.|+ +++
T Consensus       186 vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~t~sK~~~~G~rig~-~~~  264 (396)
T PRK02627        186 VMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIMTLAKGLGGGVPIGA-VLA  264 (396)
T ss_pred             EEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEEEEcchhhCCcccEE-EEE
Confidence            999999999855889999999999999999999999999884321     11112211  4578999986  5555 555


Q ss_pred             Cccccc
Q psy5413         279 PEEFIQ  284 (285)
Q Consensus       279 ~~~~i~  284 (285)
                      ++++++
T Consensus       265 ~~~~~~  270 (396)
T PRK02627        265 KEKVAD  270 (396)
T ss_pred             cHHHHh
Confidence            565543

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.83  E-value=7.7e-20  Score=168.79  Aligned_cols=237  Identities=19%  Similarity=0.163  Sum_probs=147.7

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC--C--ccCChh
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD--V--YLEDPT  102 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~--~--y~~~~~  102 (285)
                      |..+.++.+.+.|+..++.+++.++.|+.                  .+.++.||+|.+|+.+++....  .  ...++.
T Consensus        37 ~~~~~~~~G~~l~D~dG~~ylD~~~g~~~------------------~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~   98 (451)
T PRK06918         37 PTFAQSANGALVTDVDGNQYIDFAGAIGT------------------INVGHSHPKVKEALHKQVDQYIHTGFNVMMYEP   98 (451)
T ss_pred             CceEEeccccEEEeCCCCEEEEcCCchhh------------------cCCCCCCHHHHHHHHHHHHhccCccccccccHH
Confidence            44555666777776554444444443332                  1347799999999998876421  1  123567


Q ss_pred             HHHHHHHHHhHcCC---CcEEEcCChHHHHHHHHHHccccCCCe-EEe-cCCcceeeecccccccc-cccccccce---e
Q psy5413         103 CKELQEKAAKLAGK---EAAIFVPSGTMGNLIAIMTHCDRRDSE-IIV-GDCSHIMLWEQGGASQT-SVYSQIGRV---L  173 (285)
Q Consensus       103 ~~~l~~~la~~~g~---~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi~-~~~~h~~~~~~~~~~~~-~~~~~~~g~---~  173 (285)
                      ..++.++|++++..   +.++|++|||+|++.|++++...+|+. |+. ...||+.+.....+... ..+...++.   .
T Consensus        99 ~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~  178 (451)
T PRK06918         99 YIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPE  178 (451)
T ss_pred             HHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCC
Confidence            88999999999752   478999999999999999998666654 333 57889887543332211 112111111   1


Q ss_pred             eeeeecCC-----CCCC-------CHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeE
Q psy5413         174 MRGVTNQK-----DGTF-------DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPV  241 (285)
Q Consensus       174 ~~~~~~~~-----~~~~-------d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~l  241 (285)
                      +..+|.+.     .+..       .++.+++.+..  ..+.+++++|++|+.++..|..+.+.+++++|+++|++||+++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gill  256 (451)
T PRK06918        179 VYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFIS--EVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILF  256 (451)
T ss_pred             cEEcCCCccccccccCchHHHHHHHHHHHHHHHHh--hcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence            22222211     1100       02234444321  0123489999999999887444666788999999999999999


Q ss_pred             EEeCccCChh-----hhcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413         242 HMDGARLPLA-----EVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       242 i~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      |+||+++++.     ......++.  +.+++|.+++  |+|+++ +++++++
T Consensus       257 I~DEV~tg~gr~g~~~a~~~~~v~pDi~t~sK~l~~G~pig~v~-~~~~i~~  307 (451)
T PRK06918        257 VADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLGAGVPISGVI-GRKEIMD  307 (451)
T ss_pred             EEeccccCcCccCceehhHhcCCCCCEEeeehhhcCCCccEEEE-EcHHHHh
Confidence            9999988432     112233332  6688999987  666544 5565543

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.83  E-value=2.9e-20  Score=172.36  Aligned_cols=199  Identities=15%  Similarity=0.076  Sum_probs=147.3

Q ss_pred             CeeeeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc------C---C---CcEEEcCChHHHHHHHH
Q psy5413          66 IRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA------G---K---EAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        66 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~------g---~---~~~~~~~~Gs~a~~~al  133 (285)
                      +.++++..+.+..+.|+.+..+.+...++ .|.......++++.+++.+      +   .   +.++.++|+++|+..++
T Consensus       100 ~~~i~l~~g~p~~~~~~~v~e~~~~~~~~-~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~  178 (527)
T PRK09275        100 RDAVSYVRDQLGFDADEFVYELVDGIIGD-NYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIF  178 (527)
T ss_pred             HHHHhhcCCCCCCCCCHHHHHHHHHHhcC-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHH
Confidence            45688888888887665444455555554 4887778888999988732      1   1   14678888999999888


Q ss_pred             HH-----ccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceE
Q psy5413         134 MT-----HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       134 ~~-----~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                      .+     ++ .+||+|+++++++........+.       ..+.+++.++..  .++.+|++++++++++       +++
T Consensus       179 ~aL~~~~ll-~pGD~Vlv~~P~y~~Y~~~~~l~-------g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~-------~tk  243 (527)
T PRK09275        179 DSLKENGLL-KAGDKIALMTPIFTPYLEIPELP-------RYDLEVVHINADEENEWQYPDSELEKLRDP-------SIK  243 (527)
T ss_pred             HHHhhhhcC-CCCCEEEEeCCChHHHHHHHHHc-------CCCeEEEEeecCcccCCCCCHHHHHhhcCC-------CCC
Confidence            86     34 69999999988875543322222       235677777643  3467899999998877       899


Q ss_pred             EEEEecccCCCCeeeCCHHHHHHHHHHHHH--cCCeEEEeCccCChh-------hhcccCCeEEEecccccCc--ceeEE
Q psy5413         207 LVCVENTHNYCGGTVLPMQWLRELKARCQE--HNIPVHMDGARLPLA-------EVCASVDTVMFCLSKGLGA--PVGSI  275 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~--~gi~li~Dea~~~~~-------~~~~~~dv~~~s~sK~l~~--p~gg~  275 (285)
                      +|++++|+||| |.+++.+++++|+++|++  +|++||+||+|..+.       .....--+++.|+||.+++  .+.|+
T Consensus       244 ai~l~nP~NPT-G~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~RlG~  322 (527)
T PRK09275        244 ALFLVNPSNPP-SVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATGWRLGV  322 (527)
T ss_pred             EEEEeCCcCCc-CCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcHhHHhh
Confidence            99999999999 999999999999999965  599999999987322       1111112448999999865  77888


Q ss_pred             eecCcc
Q psy5413         276 LAGPEE  281 (285)
Q Consensus       276 ~~~~~~  281 (285)
                      ++++++
T Consensus       323 i~~~~~  328 (527)
T PRK09275        323 IALHED  328 (527)
T ss_pred             hhcCch
Confidence            888775

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.83  E-value=2.9e-20  Score=167.00  Aligned_cols=197  Identities=19%  Similarity=0.160  Sum_probs=147.7

Q ss_pred             eeeeeccCC-cCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCCe
Q psy5413          67 RTVDIRSDT-ISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDSE  143 (285)
Q Consensus        67 ~~~~~~~~~-~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~~  143 (285)
                      .+++|..+. +.+++|.+.+++.+.... ..|.+.....++++.++++++.+  .+++++|+++++..++.+++ ++|+.
T Consensus        30 ~~i~l~~n~~~~~~~~~v~~a~~~~~~~-~~~~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~-~~gd~  107 (359)
T PRK03158         30 KIVKLASNENPYGPSPKVKEAIAAHLDE-LALYPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALL-NPGTN  107 (359)
T ss_pred             ceEEecCCCCCCCCCHHHHHHHHHHHHH-hhcCCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHh-CCCCE
Confidence            568887654 444788999998776543 33445567889999999999864  46888989999998888876 58999


Q ss_pred             EEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCC
Q psy5413         144 IIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLP  223 (285)
Q Consensus       144 vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~  223 (285)
                      |+++++++......   .      ...|.+++.++.. ++.+|++++++++++       ++++|++++|+||| |.+++
T Consensus       108 v~~~~p~y~~~~~~---~------~~~g~~~~~~~~~-~~~~d~~~l~~~~~~-------~~~~v~i~~p~NPt-G~~~~  169 (359)
T PRK03158        108 TVMAEPTFSQYRHN---A------IIEGAEVREVPLK-DGGHDLEAMLKAIDE-------QTKIVWICNPNNPT-GTYVN  169 (359)
T ss_pred             EEEcCCCHHHHHHH---H------HHcCCeEEEEecC-CCCcCHHHHHHhcCC-------CCCEEEEeCCCCCC-CCCCC
Confidence            99988776443221   1      2347888888875 567899999998876       78999999999999 99999


Q ss_pred             HHHHHHHHHHHHHcCCeEEEeCccCChh---------hhcccC--CeEEEecccccCc--ceeEEeecCccccc
Q psy5413         224 MQWLRELKARCQEHNIPVHMDGARLPLA---------EVCASV--DTVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       224 ~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~~~~--dv~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      .+++.++++.|+ +|+++|+||+|..+.         ......  .+++.|+||.++.  .+.|++++++++++
T Consensus       170 ~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~  242 (359)
T PRK03158        170 HEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASEELIE  242 (359)
T ss_pred             HHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCHHHHH
Confidence            877777777664 699999999986211         111122  2448999999874  66788888887664

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.83  E-value=9.4e-20  Score=164.94  Aligned_cols=196  Identities=22%  Similarity=0.301  Sum_probs=147.0

Q ss_pred             CCeeeeeccCC-cCC-CcHHHHHHHHhcccC----CC----CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDT-ISK-PTMEMKNYMFNCEVG----DD----VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~-~~~-~~~~v~~a~~~~~~~----~~----~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~  134 (285)
                      |++++||.++. +++ ++|++++++.++...    ..    .++..+...++++.++++++.+..+++++|++++..+++
T Consensus        38 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~g~~~~~~~l~  117 (385)
T PRK05958         38 GRRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGAERALLFSSGYAANLAVLT  117 (385)
T ss_pred             CceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHH
Confidence            78889999764 344 678999999876642    11    123456789999999999998888889999999998888


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      .++ ++||.|++.+++|........         ..|..++.++.     .|++++++.+++.    ..+++++++++++
T Consensus       118 ~~~-~~gd~V~~~~~~~~~~~~~~~---------~~g~~~~~~~~-----~d~~~l~~~i~~~----~~~~~lvi~~~~~  178 (385)
T PRK05958        118 ALA-GKGDLIVSDKLNHASLIDGAR---------LSRARVRRYPH-----NDVDALEALLAKW----RAGRALIVTESVF  178 (385)
T ss_pred             HhC-CCCCEEEEeCccCHHHHHHHH---------hcCCceEEeCC-----CCHHHHHHHHHhc----cCCCeEEEEEecc
Confidence            776 689999999988876543222         23666666654     3889999998651    1246788888899


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhh-----------hcccCC-eEEEecccccCcceeEEeecCcc
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAE-----------VCASVD-TVMFCLSKGLGAPVGSILAGPEE  281 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~-----------~~~~~d-v~~~s~sK~l~~p~gg~~~~~~~  281 (285)
                      +++ |...+   +++|+++|++||+++|+||+|. +...           +....| +++.|+||++++ .||+++.+++
T Consensus       179 ~~~-G~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~-~Gg~~~~~~~  253 (385)
T PRK05958        179 SMD-GDLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGS-SGAAVLGSET  253 (385)
T ss_pred             cCC-CCcCC---HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhccc-CCcEEEcCHH
Confidence            988 88888   9999999999999999999986 2111           112234 558999999975 5678888776


Q ss_pred             ccc
Q psy5413         282 FIQ  284 (285)
Q Consensus       282 ~i~  284 (285)
                      +++
T Consensus       254 ~~~  256 (385)
T PRK05958        254 LID  256 (385)
T ss_pred             HHH
Confidence            543

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.83  E-value=9.8e-20  Score=165.92  Aligned_cols=205  Identities=15%  Similarity=0.107  Sum_probs=137.9

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCC----CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHc
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD----DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~----~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~  136 (285)
                      |++++||.++    +.++.+|+|.+++.+++...    ..+ ..+...++++.++++.+.+.++|++||++|++.+++.+
T Consensus        30 g~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~SGs~A~e~al~~~  108 (400)
T PTZ00125         30 GKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSRAF-YNDVLGLAEKYITDLFGYDKVLPMNSGAEAGETALKFA  108 (400)
T ss_pred             CCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhcccccccc-cCHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHH
Confidence            5667777654    33558999999999876421    112 24678899999999998888999999999999999987


Q ss_pred             ccc---------CCCeEE-ecCCcceeeecccccccc-cccc--cccceeeeeeecCCCCCCCHHHHHHHhcccccccCC
Q psy5413         137 CDR---------RDSEII-VGDCSHIMLWEQGGASQT-SVYS--QIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCA  203 (285)
Q Consensus       137 ~~~---------~g~~vi-~~~~~h~~~~~~~~~~~~-~~~~--~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~  203 (285)
                      ...         .++.|+ +...+|+.+......... ..+.  ......+..++     ..|++++++.++..      
T Consensus       109 ~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~le~~l~~~------  177 (400)
T PTZ00125        109 RKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVD-----YNDVEALEKLLQDP------  177 (400)
T ss_pred             HHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeC-----CCCHHHHHHHhCCC------
Confidence            521         123444 466778876543333211 0100  00000111222     24899999999621      


Q ss_pred             ceEEEEEecccCCCCeeeC-CHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhc--c--cCCeEEEecccccCc--c
Q psy5413         204 STSLVCVENTHNYCGGTVL-PMQWLRELKARCQEHNIPVHMDGARLPLA-----EVC--A--SVDTVMFCLSKGLGA--P  271 (285)
Q Consensus       204 ~~~~v~i~~~~n~~gG~~~-~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~--~--~~dv~~~s~sK~l~~--p  271 (285)
                      ++++|++++++|++ |.+. +.+++++|+++|++||+++|+||+|+++.     ...  .  ..|++  +++|++++  .
T Consensus       178 ~~~~v~~ep~~~~~-G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~--~~sK~l~~g~~  254 (400)
T PTZ00125        178 NVAAFIVEPIQGEA-GVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIV--LLGKALSGGLY  254 (400)
T ss_pred             CeEEEEEcCccCCC-CCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEE--EEcccccCCCc
Confidence            79999999999999 6655 57889999999999999999999987432     111  1  23544  56799986  2


Q ss_pred             eeEEeecCccccc
Q psy5413         272 VGSILAGPEEFIQ  284 (285)
Q Consensus       272 ~gg~~~~~~~~i~  284 (285)
                      ..|+++.++++++
T Consensus       255 ~ig~v~~~~~~~~  267 (400)
T PTZ00125        255 PISAVLANDDVML  267 (400)
T ss_pred             CcEEEEEcHHHHh
Confidence            3456666666654

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.83  E-value=1.7e-19  Score=164.73  Aligned_cols=160  Identities=21%  Similarity=0.247  Sum_probs=126.7

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT  178 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~  178 (285)
                      .+|...+|++.++++.|.+.+++++||++|+..++.+++ ++|++|++....|..+.......    . ...|.++..++
T Consensus        56 ~~pt~~~Le~~lA~l~g~~~~l~~ssG~~Ai~~al~al~-~~Gd~Vl~~~~~Y~~t~~~~~~~----l-~~~gi~v~~~d  129 (425)
T PRK06084         56 MNPTNDVLEQRVAALEGGVGALAVASGMAAITYAIQTIA-EAGDNIVSVAKLYGGTYNLLAHT----L-PRIGIETRFAA  129 (425)
T ss_pred             CCchHHHHHHHHHHHhCCCceeEehhHHHHHHHHHHHHh-CCCCEEEEeCCCcchHHHHHHHh----c-ccceeEEEEEC
Confidence            567899999999999999889999999999999999877 58999998766554332211100    0 12355555444


Q ss_pred             cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhcc
Q psy5413         179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVCA  255 (285)
Q Consensus       179 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~~  255 (285)
                      .     .|++++++++++       ++++|++++|+||+ |.++|   +++|+++|+++|+++|+|++++..   ..+..
T Consensus       130 ~-----~d~e~le~ai~~-------~tklV~lesp~NPt-G~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~~~p~~~  193 (425)
T PRK06084        130 H-----DDIAALEALIDE-------RTKAVFCESIGNPA-GNIID---IQALADAAHRHGVPLIVDNTVATPVLCRPFEH  193 (425)
T ss_pred             C-----CCHHHHHHHhcc-------CCcEEEEeCCCCCC-CeecC---HHHHHHHHHHcCCEEEEECCCcccccCChhhc
Confidence            3     389999999987       78999999999999 99999   999999999999999999998822   22335


Q ss_pred             cCCeEEEecccccCc---ceeEEeecCc
Q psy5413         256 SVDTVMFCLSKGLGA---PVGSILAGPE  280 (285)
Q Consensus       256 ~~dv~~~s~sK~l~~---p~gg~~~~~~  280 (285)
                      ++|+++.|++|++++   .+||+++.++
T Consensus       194 gaDivv~S~tK~l~G~g~~~gG~v~~~~  221 (425)
T PRK06084        194 GADIVVHSLTKYIGGHGTSIGGIVVDSG  221 (425)
T ss_pred             CCCEEEECchhcccccccceeEEEEeCC
Confidence            799999999999987   6788887643

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.83  E-value=5.1e-20  Score=165.28  Aligned_cols=197  Identities=17%  Similarity=0.172  Sum_probs=148.8

Q ss_pred             CeeeeeccC-CcCCCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcCCC---cEEEcCChHHHHHHHHHHcccc
Q psy5413          66 IRTVDIRSD-TISKPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAGKE---AAIFVPSGTMGNLIAIMTHCDR  139 (285)
Q Consensus        66 ~~~~~~~~~-~~~~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~~---~~~~~~~Gs~a~~~al~~~~~~  139 (285)
                      ..+++|..+ ++..+++++++++.+....  ...|.. +...+|++.++++++.+   .+++++|+++++..++.+++ .
T Consensus        26 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~-~  103 (356)
T PRK04870         26 TGMVKLDAMENPYRLPAELRAELGERLAEVALNRYPD-PRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALACA-K  103 (356)
T ss_pred             CCceeCcCCCCCCCCCHHHHHHHHHHhhccccccCCC-CCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhc-C
Confidence            467888654 4445788999999876643  345654 56789999999999864   35677777788888888776 6


Q ss_pred             CCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCe
Q psy5413         140 RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGG  219 (285)
Q Consensus       140 ~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG  219 (285)
                      +||+|+++.++|.....   ..      ...|.+++.++.++++.+|++++++++.+.      ++++|++++|+||| |
T Consensus       104 ~gd~vlv~~P~y~~~~~---~~------~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~------~~~~v~l~~p~NPt-G  167 (356)
T PRK04870        104 PGATVLAPEPGFVMYRM---SA------KLAGLEFVGVPLTADFTLDLPAMLAAIAEH------RPALVFLAYPNNPT-G  167 (356)
T ss_pred             CCCEEEECCCCHHHHHH---HH------HHcCCEEEEecCCCCCCCCHHHHHHHhhcC------CCCEEEEcCCCCCC-C
Confidence            89999999888754332   22      345899999998767789999999999642      78999999999999 9


Q ss_pred             eeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------hhcccCC-eEEEecccccCc--ceeEEeecCccccc
Q psy5413         220 TVLPMQWLRELKARCQEHNIPVHMDGARLPLA------EVCASVD-TVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       220 ~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~~~~d-v~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      .+++.+++++|+++|   ++++|+||+|..+.      .+..... +++.|+|| ++.  .+.|++++++++++
T Consensus       168 ~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~  237 (356)
T PRK04870        168 NLFDDADVERIIEAA---PGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIA  237 (356)
T ss_pred             CCCCHHHHHHHHHHC---CCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHH
Confidence            999988899888887   78999999986221      1112223 44999999 544  56788888877664

>PRK08175 aminotransferase; Validated

Probab=99.83  E-value=9.2e-20  Score=165.86  Aligned_cols=204  Identities=14%  Similarity=0.133  Sum_probs=149.6

Q ss_pred             CCeeeeeccCCcCCCc-HHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc----CC----C-cEEEcCChHHHHHHH
Q psy5413          65 NIRTVDIRSDTISKPT-MEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA----GK----E-AAIFVPSGTMGNLIA  132 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~~-~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~----g~----~-~~~~~~~Gs~a~~~a  132 (285)
                      ++.+++|..+++.... +.+.+++.+....  ...|....+..+|++.+++++    |.    + .+++++|+++++..+
T Consensus        28 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~  107 (395)
T PRK08175         28 GEDIIDFSMGNPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHL  107 (395)
T ss_pred             CCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHH
Confidence            4678899988877643 4577776654432  345665566788999998875    22    3 467888888999888


Q ss_pred             HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      +..++ ++|++|+++.++|.......         ...|.+++.++.++++ .+.++++++++.    +..++++|++++
T Consensus       108 ~~~~~-~~gd~Vlv~~P~y~~~~~~~---------~~~g~~~~~v~~~~~~-~~~~~l~~~l~~----~~~~~~~v~i~~  172 (395)
T PRK08175        108 MLATL-DHGDTVLVPNPSYPIHIYGA---------VIAGAQVRSVPLVEGV-DFFNELERAIRE----SYPKPKMMILGF  172 (395)
T ss_pred             HHHhC-CCCCEEEEcCCCCcchHHHH---------HHcCCeEEEEecccCC-CcHHHHHHHHhh----ccCCceEEEEeC
Confidence            88877 69999999988765432211         2347888888875433 358888888864    223789999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hh---cccCC--eEEEecccccCc--ceeEEeec
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EV---CASVD--TVMFCLSKGLGA--PVGSILAG  278 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~---~~~~d--v~~~s~sK~l~~--p~gg~~~~  278 (285)
                      |+||| |.+++.+++++|+++|++||+++|+||+|..+.       .+   ....|  +++.|+||.++.  .+.|+++.
T Consensus       173 p~NPt-G~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~  251 (395)
T PRK08175        173 PSNPT-AQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVG  251 (395)
T ss_pred             CCCCC-CCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeC
Confidence            99999 999999999999999999999999999986211       11   11123  448999999865  56788888


Q ss_pred             Cccccc
Q psy5413         279 PEEFIQ  284 (285)
Q Consensus       279 ~~~~i~  284 (285)
                      ++++++
T Consensus       252 ~~~l~~  257 (395)
T PRK08175        252 NPELVS  257 (395)
T ss_pred             CHHHHH
Confidence            887765

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.83  E-value=8e-20  Score=164.89  Aligned_cols=161  Identities=17%  Similarity=0.170  Sum_probs=129.8

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|....|++.++++.|.+.+++++||++|+..++.+++ ++||+|+++++.|..+.... ...      ...|.++..+
T Consensus        51 ~npt~~~Le~~lA~leg~e~ivvt~gg~~Ai~~~l~all-~~Gd~Il~~~~~y~~~~~~~~~~~------~~~gi~v~~v  123 (388)
T PRK08861         51 GNPNRGLLEQTLSELESGKGAVVTNCGTSALNLWVSALL-GPDDLIVAPHDCYGGTYRLFNTRA------NKGDFKVQFV  123 (388)
T ss_pred             CCchHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHc-CCCCEEEEcCCchHHHHHHHHHHH------hcCCeEEEEE
Confidence            578899999999999999999999999999999999876 69999999877765432211 111      2335666666


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~  254 (285)
                      +.     .|++++++++++       ++++|++++|+||+ |.++|   +++|+++|+++|+++|+|++|...   ..+.
T Consensus       124 d~-----~d~e~l~~~i~~-------~tklV~lesP~NPt-G~v~d---l~~I~~la~~~gi~vIvDea~~~~~~~~pl~  187 (388)
T PRK08861        124 DQ-----SDAAALDAALAK-------KPKLILLETPSNPL-VRVVD---IAELCQKAKAVGALVAVDNTFLTPVLQKPLE  187 (388)
T ss_pred             CC-----CCHHHHHHhcCc-------CCeEEEEECCCCCC-CcccC---HHHHHHHHHHcCCEEEEECCccccccCCCcc
Confidence            43     489999999977       89999999999999 99999   899999999999999999998822   2334


Q ss_pred             ccCCeEEEecccccCcc---eeEEeecC-ccc
Q psy5413         255 ASVDTVMFCLSKGLGAP---VGSILAGP-EEF  282 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~p---~gg~~~~~-~~~  282 (285)
                      .++|+++.|++|+++|+   +||+++++ +++
T Consensus       188 ~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~  219 (388)
T PRK08861        188 LGADFVIHSTTKYINGHSDVIGGVLITKTKEH  219 (388)
T ss_pred             cCCCEEEeecceeccCCCcceeEEEEecHHHH
Confidence            57999999999999984   57877664 444

>PRK02948 cysteine desulfurase; Provisional

Probab=99.83  E-value=1.4e-19  Score=163.87  Aligned_cols=196  Identities=15%  Similarity=0.180  Sum_probs=146.1

Q ss_pred             eeeccCCcCCCcHHHHHHHHhcccC---CC--Ccc----CChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHcc
Q psy5413          69 VDIRSDTISKPTMEMKNYMFNCEVG---DD--VYL----EDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        69 ~~~~~~~~~~~~~~v~~a~~~~~~~---~~--~y~----~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~  137 (285)
                      +.|.+...+..++.+++++.+....   ..  .+.    ......++++.+++++|.+  .+++++|+++++..++.+++
T Consensus         2 ~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~   81 (381)
T PRK02948          2 IYLDYAATTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLL   81 (381)
T ss_pred             EeccCCCCCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHH
Confidence            4566666667788999998765531   11  111    1234778999999999854  35788888999999888775


Q ss_pred             c---cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         138 D---RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       138 ~---~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      .   ++|+.|++++..|.+........      +..|.++..++.++++.+|++++++++++       ++++|++++++
T Consensus        82 ~~~~~~g~~vv~~~~~h~s~~~~~~~~------~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-------~~~lv~~~~~~  148 (381)
T PRK02948         82 NALPQNKKHIITTPMEHASIHSYFQSL------ESQGYTVTEIPVDKSGLIRLVDLERAITP-------DTVLASIQHAN  148 (381)
T ss_pred             HhccCCCCEEEECCcccHHHHHHHHHH------HhCCCEEEEEeeCCCCCCCHHHHHHhcCC-------CCEEEEEECCc
Confidence            2   35788888887776554322222      34588888888777788999999999976       78999999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCcceeEEeecCcc
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPVGSILAGPEE  281 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~  281 (285)
                      |++ |.+.|   +++|.++|+++|+++|+|+++. +   ......+.|+++.|+||++|.+-.|+++.+++
T Consensus       149 n~t-G~~~~---~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~  215 (381)
T PRK02948        149 SEI-GTIQP---IAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIYGPKGVGAVYINPQ  215 (381)
T ss_pred             CCc-Eeehh---HHHHHHHHHHcCCEEEEEChhhccccccCcccCCCCEEEecHHhcCCCCcEEEEEEcCC
Confidence            999 99999   8999999999999999999877 2   22223478999999999877543455555544

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.83  E-value=1e-19  Score=163.71  Aligned_cols=165  Identities=13%  Similarity=0.070  Sum_probs=134.9

Q ss_pred             CCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccc-cccccccccccc
Q psy5413          95 DVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGG-ASQTSVYSQIGR  171 (285)
Q Consensus        95 ~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~~~~~~~g  171 (285)
                      ..|+  .+|....||+.++++.|.+.+++++||+.|+..++.+++ ++||+|++++..|..+..... ..      ..+|
T Consensus        54 ~~YsR~~nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll-~~GD~Vv~~~~~Yg~t~~l~~~~l------~~~G  126 (395)
T PRK08114         54 LFYGRRGTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFV-EQGDHVLMTGTAYEPTQDFCSKIL------SKLG  126 (395)
T ss_pred             ccccCCCChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHc-CCCCEEEEeCCCcHHHHHHHHHHH------HhcC
Confidence            3454  689999999999999999999999999999999998876 699999987666654433221 11      3458


Q ss_pred             eeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC--CeEEEeCccCC
Q psy5413         172 VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN--IPVHMDGARLP  249 (285)
Q Consensus       172 ~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g--i~li~Dea~~~  249 (285)
                      +++..++.     .|.++++++|++       +|++|++|+|+|++ |.+.|   |++|+++||++|  +++++|.+++.
T Consensus       127 i~v~~vd~-----~d~~~l~~~l~~-------~TrlV~~EtpsNp~-~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~  190 (395)
T PRK08114        127 VTTTWFDP-----LIGADIAKLIQP-------NTKVVFLESPGSIT-MEVHD---VPAIVAAVRSVNPDAVIMIDNTWAA  190 (395)
T ss_pred             cEEEEECC-----CCHHHHHHhcCC-------CceEEEEECCCCCC-CEeec---HHHHHHHHHHhCCCCEEEEECCCcc
Confidence            78777664     378999999987       89999999999999 99999   999999999984  99999999882


Q ss_pred             ---hhhhcccCCeEEEecccccCcc---eeEEeecCccc
Q psy5413         250 ---LAEVCASVDTVMFCLSKGLGAP---VGSILAGPEEF  282 (285)
Q Consensus       250 ---~~~~~~~~dv~~~s~sK~l~~p---~gg~~~~~~~~  282 (285)
                         ...+..++|+++.|.+|+++|+   ++|+++.++++
T Consensus       191 p~~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~  229 (395)
T PRK08114        191 GVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARC  229 (395)
T ss_pred             ccccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHH
Confidence               2334468999999999999994   78888877654

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.83  E-value=9.6e-20  Score=167.39  Aligned_cols=217  Identities=16%  Similarity=0.111  Sum_probs=136.1

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCCCC----ccCChhHHHHHHHHHhHcC---CCcEEEcCChHHHHHHHH
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGDDV----YLEDPTCKELQEKAAKLAG---KEAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~~----y~~~~~~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~al  133 (285)
                      |++++||.++    +.++.+|++.+|+.+++.....    ...++...+|.++|++...   .+.++|++|||+|++.|+
T Consensus        53 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~Al  132 (441)
T PRK05769         53 GNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAI  132 (441)
T ss_pred             CCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCccCcccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHH
Confidence            4555555444    4477999999999988763211    1135668899999999874   467899999999999999


Q ss_pred             HHccccCCCe-EEe-cCCcceeeecccccccc-cccccccc---eeeeeeecCCCC----C-C--------CHHHHHHHh
Q psy5413         134 MTHCDRRDSE-IIV-GDCSHIMLWEQGGASQT-SVYSQIGR---VLMRGVTNQKDG----T-F--------DLDEMEAKF  194 (285)
Q Consensus       134 ~~~~~~~g~~-vi~-~~~~h~~~~~~~~~~~~-~~~~~~~g---~~~~~~~~~~~~----~-~--------d~~~l~~~i  194 (285)
                      +++....|+. |+. ...||+.+.....+... ..+...++   ..+..++.+...    . .        +++.+++.+
T Consensus       133 klAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~  212 (441)
T PRK05769        133 KIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYL  212 (441)
T ss_pred             HHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHH
Confidence            9988666654 333 57889887543322110 11111111   112222221100    0 1        133455523


Q ss_pred             cccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCCeE--EEecccc
Q psy5413         195 STADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVDTV--MFCLSKG  267 (285)
Q Consensus       195 ~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~dv~--~~s~sK~  267 (285)
                      .+ ...+.+++++|++|++++..|....|.+++++|.++|++||+++|+||+++++.     ...+..++.  +.+++|.
T Consensus       213 ~~-~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~K~  291 (441)
T PRK05769        213 FK-KLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKA  291 (441)
T ss_pred             Hh-hccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEccc
Confidence            21 001234799999999999885556778999999999999999999999988432     122222222  3467899


Q ss_pred             cCc--ceeEEeecCcccc
Q psy5413         268 LGA--PVGSILAGPEEFI  283 (285)
Q Consensus       268 l~~--p~gg~~~~~~~~i  283 (285)
                      +++  |.|+ ++++++++
T Consensus       292 l~~G~p~ga-v~~~~~i~  308 (441)
T PRK05769        292 IAGGLPLGA-VIGRAELM  308 (441)
T ss_pred             ccCCcccEE-EEEehhhh
Confidence            987  6665 44555543

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.83  E-value=6.3e-20  Score=164.92  Aligned_cols=207  Identities=22%  Similarity=0.205  Sum_probs=145.9

Q ss_pred             eeeeeccCCcCCC--c---HHHHHHHHh-cc--cCCCCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHHH
Q psy5413          67 RTVDIRSDTISKP--T---MEMKNYMFN-CE--VGDDVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGNL  130 (285)
Q Consensus        67 ~~~~~~~~~~~~~--~---~~v~~a~~~-~~--~~~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~~  130 (285)
                      ++|+|+++++...  +   +++.+++.+ ..  .....|+...+..+|++.++++++        .+..+++.+|+.+..
T Consensus         2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~   81 (363)
T PF00155_consen    2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAAL   81 (363)
T ss_dssp             TEEESSSSSTSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHH
T ss_pred             CEEEEECCCCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccch
Confidence            4688888877774  3   345555443 11  124678877789999999999998        342456666665555


Q ss_pred             HHHHHcc-ccCCCeEEecCCcceeeecccccccccccccccceeeeeeec--CCCCCCCHHHHHHHhcccccccCCceEE
Q psy5413         131 IAIMTHC-DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN--QKDGTFDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       131 ~al~~~~-~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                      .++..++ ..+|+.|++++++|........         ..|.+++.++.  ..++.+|+++|++.+++... ...++++
T Consensus        82 ~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~---------~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~-~~~~~~~  151 (363)
T PF00155_consen   82 FLLLRLLKINPGDTVLVPDPCYPSYIEAAR---------LLGAEVIPVPLDSENDFHLDPEALEEALDELPS-KGPRPKA  151 (363)
T ss_dssp             HHHHHHHHSSTTSEEEEEESSSTHHHHHHH---------HTTSEEEEEEEEETTTTEETHHHHHHHHHTSHT-TTETEEE
T ss_pred             hhhhhcccccccccceecCCcccccccccc---------ccCceeeeccccccccccccccccccccccccc-cccccce
Confidence            5554444 3588999999888866554332         34778888874  35677999999999987321 1114689


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----------hhhcccCC-eEEEecccccCc--cee
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----------AEVCASVD-TVMFCLSKGLGA--PVG  273 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----------~~~~~~~d-v~~~s~sK~l~~--p~g  273 (285)
                      |++++|+||| |..++.+++++|+++|++||+++|+||+|..+           ..+..+.+ +++.|+||.++.  .+.
T Consensus       152 v~~~~p~nPt-G~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRv  230 (363)
T PF00155_consen  152 VLICNPNNPT-GSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRV  230 (363)
T ss_dssp             EEEESSBTTT-TBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTE
T ss_pred             eeeccccccc-ccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeecccccccccccc
Confidence            9999999999 99999999999999999999999999998811           12223445 459999999876  445


Q ss_pred             EEeecCccccc
Q psy5413         274 SILAGPEEFIQ  284 (285)
Q Consensus       274 g~~~~~~~~i~  284 (285)
                      |+++.++++++
T Consensus       231 G~i~~~~~~~~  241 (363)
T PF00155_consen  231 GYIVAPPELIE  241 (363)
T ss_dssp             EEEEEEHHHHH
T ss_pred             ccccchhhhhh
Confidence            77777776654

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.83  E-value=7.5e-20  Score=164.28  Aligned_cols=199  Identities=15%  Similarity=0.117  Sum_probs=146.5

Q ss_pred             CCeeeeeccC-CcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCC
Q psy5413          65 NIRTVDIRSD-TISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRD  141 (285)
Q Consensus        65 ~~~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g  141 (285)
                      +..+++|..+ ++..++|.+.+++.+.......|. .+...+|++.++++++.+  .+++++|+++++..++++++ ++|
T Consensus        29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~~-~~g  106 (357)
T PRK14809         29 PDDLVKLSSNENPHGPSPAAVEAIREAAERVHSYP-KASHADLTAALADRWDVSPEQVWLANGGDGALDYLARAML-DPG  106 (357)
T ss_pred             ccceeEecCCCCCCCCCHHHHHHHHHHHhhhhcCC-CCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhc-CCC
Confidence            4568999865 555678889999877654434564 456889999999998754  35888888999999999877 699


Q ss_pred             CeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCe
Q psy5413         142 SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGG  219 (285)
Q Consensus       142 ~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG  219 (285)
                      |.|+++++++......   .      ...|..++.++..  .++.++++++++.+ +       ++++|++++|+||| |
T Consensus       107 d~V~v~~P~y~~~~~~---~------~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~-------~~k~i~l~~p~NPT-G  168 (357)
T PRK14809        107 DTVLVPDPGFAYYGMS---A------RYHHGEVREYPVSKADDFEQTADTVLDAY-D-------GERIVYLTSPHNPT-G  168 (357)
T ss_pred             CEEEEeCCChHHHHHH---H------HHcCCeEEEEecccCcCCCcCHHHHHHhh-c-------CCcEEEEeCCCCCC-C
Confidence            9999998876433221   1      2336666666653  23456777777665 3       46899999999999 9


Q ss_pred             eeCCHHHHHHHHHHHHHcCCeEEEeCccCCh------hhhcccC-CeE-EEecccccCc--ceeEEeecCccccc
Q psy5413         220 TVLPMQWLRELKARCQEHNIPVHMDGARLPL------AEVCASV-DTV-MFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       220 ~~~~~~~l~~i~~la~~~gi~li~Dea~~~~------~~~~~~~-dv~-~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      .+++.+++++|+++|++ ++++|+||+|..+      ....... .++ +.||||.++.  .+.|++++++++++
T Consensus       169 ~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~  242 (357)
T PRK14809        169 SEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWAD  242 (357)
T ss_pred             cCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecCHHHHH
Confidence            99999999999998875 7899999998722      1112222 344 8999999873  67789988887764

>PRK05939 hypothetical protein; Provisional

Probab=99.83  E-value=1.5e-19  Score=163.83  Aligned_cols=158  Identities=19%  Similarity=0.187  Sum_probs=128.2

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT  178 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~  178 (285)
                      .+|...+||+.++++.|.+.++.+++|+.|+..++.+++ ++||+|++++..|..+.......      ...|.+++.++
T Consensus        45 g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all-~~Gd~Vv~~~~~y~~t~~~~~~l------~~~G~~v~~v~  117 (397)
T PRK05939         45 GTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLL-RAGDHLVSSQFLFGNTNSLFGTL------RGLGVEVTMVD  117 (397)
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHc-CCCCEEEECCCccccHHHHHHHH------HhcCCEEEEEC
Confidence            568899999999999999999999999999999998876 69999999877664432211111      24577877776


Q ss_pred             cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhcc
Q psy5413         179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVCA  255 (285)
Q Consensus       179 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~~  255 (285)
                      .     .|++++++++++       ++++|++++|+||+ |.+.|   +++|+++|+++|+++|+|++++..   .....
T Consensus       118 ~-----~d~e~l~~~l~~-------~tklV~vesp~Npt-G~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~~~~~  181 (397)
T PRK05939        118 A-----TDVQNVAAAIRP-------NTRMVFVETIANPG-TQVAD---LAGIGALCRERGLLYVVDNTMTSPWLFRPKDV  181 (397)
T ss_pred             C-----CCHHHHHHhCCC-------CCeEEEEECCCCCC-CCHHh---HHHHHHHHHHcCCEEEEECCcccccccCcccc
Confidence            5     289999999987       89999999999999 88888   999999999999999999998732   22334


Q ss_pred             cCCeEEEecccccCc---ceeEEeecC
Q psy5413         256 SVDTVMFCLSKGLGA---PVGSILAGP  279 (285)
Q Consensus       256 ~~dv~~~s~sK~l~~---p~gg~~~~~  279 (285)
                      ++|+++.|++|++++   .+||+++.+
T Consensus       182 gaDivv~S~sK~~~g~g~~igg~v~~~  208 (397)
T PRK05939        182 GASLVINSLSKYIAGHGNALGGAVTDT  208 (397)
T ss_pred             CCEEEEecCeecccCCCCeEEEEEecC
Confidence            789999999999997   567766643

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.83  E-value=8e-20  Score=164.63  Aligned_cols=199  Identities=21%  Similarity=0.145  Sum_probs=146.8

Q ss_pred             CCeeeeeccC-CcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCC
Q psy5413          65 NIRTVDIRSD-TISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRD  141 (285)
Q Consensus        65 ~~~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g  141 (285)
                      +.++++|.++ ++.+++|.+.+++.+.......|.. +...++++.++++++.+  .+++++++++++..++.+++ ++|
T Consensus        31 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~-~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l~-~~g  108 (367)
T PRK02731         31 IADIIKLASNENPLGPSPKAIEAIRAAADELHRYPD-GSGFELKAALAEKFGVDPERIILGNGSDEILELLARAYL-GPG  108 (367)
T ss_pred             CCceEEecCCCCCCCCCHHHHHHHHHHHHhhcCCCC-CcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhc-CCC
Confidence            4567999876 4556788899998876544445653 33578999999999865  35777777888888878776 589


Q ss_pred             CeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeee
Q psy5413         142 SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTV  221 (285)
Q Consensus       142 ~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~  221 (285)
                      +.|+++++.|.....   ..      ...|.+++.++. .++.+|++++++++++       ++++|++++|+||| |.+
T Consensus       109 d~vl~~~p~y~~~~~---~~------~~~g~~~~~~~~-~~~~~~~~~l~~~~~~-------~~~~v~l~~p~npt-G~~  170 (367)
T PRK02731        109 DEVIYSEHGFAVYPI---AA------QAVGAKPVEVPA-KDYGHDLDAMLAAVTP-------RTRLVFIANPNNPT-GTY  170 (367)
T ss_pred             CEEEEecCCHHHHHH---HH------HHcCCeEEEecc-cCCCCCHHHHHHHhCC-------CCcEEEEeCCCCCC-CcC
Confidence            999998877643221   11      345888888887 4567899999999976       78999999999999 999


Q ss_pred             CCHHHHHHHHHHHHHcCCeEEEeCccCChh---------hhc-ccCCe-EEEecccccC--cceeEEeecCccccc
Q psy5413         222 LPMQWLRELKARCQEHNIPVHMDGARLPLA---------EVC-ASVDT-VMFCLSKGLG--APVGSILAGPEEFIQ  284 (285)
Q Consensus       222 ~~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~-~~~dv-~~~s~sK~l~--~p~gg~~~~~~~~i~  284 (285)
                      ++.+++.++++.|+ +|+++|+||+|....         ... ..-++ ++.|+||.++  |.+.|++++++++++
T Consensus       171 ~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~  245 (367)
T PRK02731        171 LPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIID  245 (367)
T ss_pred             CCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCHHHHH
Confidence            99777777777664 599999999976111         111 12233 4889999875  366788888887664

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.83  E-value=2.2e-19  Score=164.90  Aligned_cols=202  Identities=16%  Similarity=0.186  Sum_probs=150.2

Q ss_pred             CeeeeeccCCcCCCcHHHHHHHHhcccCC--C----C-cc---CChhHHHHHHHHHhHcCCC---cEEEcCChHHHHHHH
Q psy5413          66 IRTVDIRSDTISKPTMEMKNYMFNCEVGD--D----V-YL---EDPTCKELQEKAAKLAGKE---AAIFVPSGTMGNLIA  132 (285)
Q Consensus        66 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~----~-y~---~~~~~~~l~~~la~~~g~~---~~~~~~~Gs~a~~~a  132 (285)
                      .+++.|.+...+..++.+.+++.+.....  .    . +.   ......++++.+++++|.+   .++|++|+++++..+
T Consensus        31 ~~~iyLd~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i  110 (424)
T PLN02855         31 SKLVYLDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLV  110 (424)
T ss_pred             CCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHH
Confidence            45678888777777788999987654321  1    1 11   1123578999999999873   468999999999988


Q ss_pred             HHHc---cccCCCeEEecCCcceeeec-ccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEE
Q psy5413         133 IMTH---CDRRDSEIIVGDCSHIMLWE-QGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLV  208 (285)
Q Consensus       133 l~~~---~~~~g~~vi~~~~~h~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v  208 (285)
                      +..+   ..++|++|++.+..|.+... ...++      ...|.+++.++.++++.+|++++++.|++       ++++|
T Consensus       111 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a------~~~g~~v~~v~~~~~~~~~~~~l~~~i~~-------~t~lv  177 (424)
T PLN02855        111 AYTWGLANLKPGDEVILSVAEHHSNIVPWQLVA------QKTGAVLKFVGLTPDEVLDVEQLKELLSE-------KTKLV  177 (424)
T ss_pred             HHHhhhhcCCCcCEEEECCCccHHHHHHHHHHH------HHcCCEEEEEecCCCCCcCHHHHHHHhcc-------CceEE
Confidence            8753   22578999998877754321 11122      34588888888766677899999999987       89999


Q ss_pred             EEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh--hh-cccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         209 CVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA--EV-CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       209 ~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~--~~-~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      ++++++|++ |.++|   +++|+++|+++|+++|+|++|. +..  .+ ..++|+++.|+||.+|.+..|++..++++++
T Consensus       178 ~i~~~~n~t-G~~~~---~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~  253 (424)
T PLN02855        178 ATHHVSNVL-GSILP---VEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPTGIGFLWGKSDLLE  253 (424)
T ss_pred             EEeCccccc-cccCC---HHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeecccccCCCccEEEEEchhhhh
Confidence            999999999 99999   8999999999999999999987 221  12 2467999999999654333477877777654

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.83  E-value=2.1e-19  Score=164.41  Aligned_cols=158  Identities=24%  Similarity=0.203  Sum_probs=129.3

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT  178 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~  178 (285)
                      .+|...++|+.++++.|.+.+++++||++|+.+++.+++ ++||+||+++..|..+......     .....|.+++.++
T Consensus        62 ~~p~~~~le~~lA~l~g~~~av~~sSGt~Al~~al~~ll-~~Gd~Vi~~~~~y~~t~~~~~~-----~l~~~Gi~v~~vd  135 (433)
T PRK08134         62 SNPTVAVLEERVAALEGGVGAIATASGQAALHLAIATLM-GAGSHIVASSALYGGSHNLLHY-----TLRRFGIETTFVK  135 (433)
T ss_pred             cChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEeCCccHHHHHHHHH-----HHhhCCeEEEEEC
Confidence            568899999999999999999999999999999998876 6899999987766543221100     0023588888877


Q ss_pred             cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC---hhhhcc
Q psy5413         179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP---LAEVCA  255 (285)
Q Consensus       179 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~---~~~~~~  255 (285)
                      ..     |+++++++|++       +|++|++++++|++ |.+.|   +++|+++|++||+++|+|++++.   ...+..
T Consensus       136 ~~-----d~~~l~~~i~~-------~TklV~~e~~~np~-g~v~D---i~~I~~la~~~gi~livD~t~a~~~~~~pl~~  199 (433)
T PRK08134        136 PG-----DIDGWRAAIRP-------NTRLLFGETLGNPG-LEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYLLRPFEH  199 (433)
T ss_pred             CC-----CHHHHHHhcCC-------CCeEEEEECCCccc-CcccC---HHHHHHHHHHcCCEEEEECCCcccccCCchhc
Confidence            53     89999999988       89999999999999 99999   99999999999999999999872   223345


Q ss_pred             cCCeEEEecccccCc---ceeEEeec
Q psy5413         256 SVDTVMFCLSKGLGA---PVGSILAG  278 (285)
Q Consensus       256 ~~dv~~~s~sK~l~~---p~gg~~~~  278 (285)
                      ++|+++.|.+|++++   -+||+++.
T Consensus       200 GaD~vv~S~tK~l~g~g~~~gG~v~~  225 (433)
T PRK08134        200 GADLVYHSATKFLGGHGTAIGGVLVD  225 (433)
T ss_pred             CCCEEEeccccccCCCCCceEEEEEe
Confidence            899999999999998   35677664

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.83  E-value=2e-19  Score=164.18  Aligned_cols=201  Identities=20%  Similarity=0.192  Sum_probs=149.8

Q ss_pred             eeeeeccCCcCCCcHHHHHHHHhcccCC-----C-Ccc----CChhHHHHHHHHHhHcCC-C--cEEEcCChHHHHHHHH
Q psy5413          67 RTVDIRSDTISKPTMEMKNYMFNCEVGD-----D-VYL----EDPTCKELQEKAAKLAGK-E--AAIFVPSGTMGNLIAI  133 (285)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~-----~-~y~----~~~~~~~l~~~la~~~g~-~--~~~~~~~Gs~a~~~al  133 (285)
                      .++.|.+...+..++.+.+++.+.....     . .+.    ......++++.+++++|. +  .++|++|+++++..++
T Consensus        23 ~~iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~  102 (406)
T PRK09295         23 PLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVA  102 (406)
T ss_pred             ceEEEeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHH
Confidence            4577777776777889999987655321     1 111    123477899999999986 2  4689999999999888


Q ss_pred             HHc---cccCCCeEEecCCcceeeec-ccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413         134 MTH---CDRRDSEIIVGDCSHIMLWE-QGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVC  209 (285)
Q Consensus       134 ~~~---~~~~g~~vi~~~~~h~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~  209 (285)
                      ..+   ..++|++|++.+..|.+... ....+      ...|.+++.++.++++.+|+++|++++++       ++++|+
T Consensus       103 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~------~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-------~t~lv~  169 (406)
T PRK09295        103 NSWGNSNVRAGDNIIISEMEHHANIVPWQMLC------ARVGAELRVIPLNPDGTLQLETLPALFDE-------RTRLLA  169 (406)
T ss_pred             HHhhhhcCCCcCEEEECcchhhHHHHHHHHHH------HHcCcEEEEEecCCCCCCCHHHHHHhcCC-------CcEEEE
Confidence            764   23578999998877754321 11122      34588888888777778899999999977       789999


Q ss_pred             EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      +++++|++ |.++|   +++|.++|+++|+++++|++|+ +   +.....++|+++.|+||.+|.+..|++..++++++
T Consensus       170 l~~~~n~t-G~~~~---~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~  244 (406)
T PRK09295        170 ITHVSNVL-GTENP---LAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQ  244 (406)
T ss_pred             Eecchhcc-cccCC---HHHHHHHHHHcCCEEEEEcccccCccccCchhcCCCEEEeehhhccCCCCcEEEEEchHhHh
Confidence            99999999 99999   9999999999999999999987 2   21123578999999999665433467777776543

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.83  E-value=8.7e-20  Score=165.12  Aligned_cols=196  Identities=17%  Similarity=0.116  Sum_probs=145.9

Q ss_pred             CCeeeeeccC-CcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCC
Q psy5413          65 NIRTVDIRSD-TISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRD  141 (285)
Q Consensus        65 ~~~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g  141 (285)
                      +..+++|..+ ++..++|.+.+++.+.. ....|. ++...+|++.++++++.+  .+++++|+++++..++.+++ ++|
T Consensus        51 ~~~~i~l~~n~~p~~~~~~v~~a~~~~~-~~~~Yp-~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~~-~~g  127 (380)
T PLN03026         51 PEDIVKLDANENPYGPPPEVLEALGNMK-FPYVYP-DPESRRLRAALAEDSGLESENILVGCGADELIDLLMRCVL-DPG  127 (380)
T ss_pred             ccceEEccCCCCCCCCCHHHHHHHHhhH-hhccCC-CCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHhc-CCC
Confidence            3577999876 56668889999886531 123354 455789999999999865  36788888999999988876 689


Q ss_pred             CeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHh-cccccccCCceEEEEEecccCCCCee
Q psy5413         142 SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKF-STADNIHCASTSLVCVENTHNYCGGT  220 (285)
Q Consensus       142 ~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~~~~~~~~v~i~~~~n~~gG~  220 (285)
                      ++|+++++++.....   ..      ...|.+++.++.++++.+|++++++++ .+       ++++|++++|+||| |.
T Consensus       128 d~Vlv~~P~y~~y~~---~~------~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~-------~~~~v~l~~P~NPT-G~  190 (380)
T PLN03026        128 DKIIDCPPTFGMYVF---DA------AVNGAEVIKVPRTPDFSLDVPRIVEAVETH-------KPKLLFLTSPNNPD-GS  190 (380)
T ss_pred             CEEEEcCCChHHHHH---HH------HHcCCEEEEeecCCCCCcCHHHHHHHHhcc-------CCcEEEEeCCCCCC-CC
Confidence            999998887643322   12      345888888887666778999999998 44       78999999999999 89


Q ss_pred             eCCHHHHHHHHHHHHHcCCeEEEeCccCChh------hhcccCC--eEEEecccccCc--ceeEEeecCccccc
Q psy5413         221 VLPMQWLRELKARCQEHNIPVHMDGARLPLA------EVCASVD--TVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       221 ~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~~~~d--v~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      +++.+++++|++.   . +++|+||+|..+.      ......+  +++.||||.+|.  .+.|++++++++++
T Consensus       191 ~~~~~~l~~l~~~---~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~~~i~  260 (380)
T PLN03026        191 IISDDDLLKILEL---P-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIE  260 (380)
T ss_pred             CCCHHHHHHHHhc---C-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecCHHHHH
Confidence            9996666666553   3 8999999986221      1112222  458999998864  77889999887764

>PRK06917 hypothetical protein; Provisional

Probab=99.83  E-value=1.9e-19  Score=165.60  Aligned_cols=233  Identities=16%  Similarity=0.128  Sum_probs=150.9

Q ss_pred             cccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC-CC---ccCChhHH
Q psy5413          29 LVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD-DV---YLEDPTCK  104 (285)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~-~~---y~~~~~~~  104 (285)
                      .+.++.+.+.|+..++.+++.+..|+.-                  +.++.||+|.+++.+++... ..   ...++...
T Consensus        16 ~i~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~   77 (447)
T PRK06917         16 VISHGKGVYLYDQNGNKYFDGSSGAVTA------------------GIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAE   77 (447)
T ss_pred             eEEeeeeeEEEeCCCCEEEECchhHHhc------------------cCCCCCHHHHHHHHHHHhhCcCccccccCCHHHH
Confidence            4777888888887666655555444432                  34789999999999887641 11   12356688


Q ss_pred             HHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCCe-EEe-cCCcceeeeccccccccccccccc----
Q psy5413         105 ELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDSE-IIV-GDCSHIMLWEQGGASQTSVYSQIG----  170 (285)
Q Consensus       105 ~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~~-vi~-~~~~h~~~~~~~~~~~~~~~~~~~----  170 (285)
                      +|.++|++.+.  .+.++|++|||+|++.|++++...      +++. |+. ...||+.+.....+.....+...+    
T Consensus        78 ~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~  157 (447)
T PRK06917         78 KLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLL  157 (447)
T ss_pred             HHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCC
Confidence            99999999874  356799999999999999998532      3443 443 578898775433322111111111    


Q ss_pred             -ceeeeeeecCCC----C------CCCHHHHHHHhcccccccCCceEEEEEecccCCCCee-eCCHHHHHHHHHHHHHcC
Q psy5413         171 -RVLMRGVTNQKD----G------TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT-VLPMQWLRELKARCQEHN  238 (285)
Q Consensus       171 -g~~~~~~~~~~~----~------~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~-~~~~~~l~~i~~la~~~g  238 (285)
                       +...+..|....    .      ..+++.+++.++..   ..+++++|++|+.++..||. +.|.+++++|.++|++||
T Consensus       158 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~---~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g  234 (447)
T PRK06917        158 EDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERI---GAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYD  234 (447)
T ss_pred             CCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhc---CCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcC
Confidence             111112221100    0      01346777777642   12379999999988754344 567899999999999999


Q ss_pred             CeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413         239 IPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       239 i~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                      +++|+||+++++     ....++.++.  +.+++|++++   |+++++.. ++++
T Consensus       235 ~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~~gK~l~~G~~Pi~a~~~~-~~i~  288 (447)
T PRK06917        235 ILFIADEVMTGLGRTGAMFAMEHWGVEPDIMTLGKGLGAGYTPIAATVVS-DRVM  288 (447)
T ss_pred             CEEEEechhhCcCcccchhhHHhcCCCCCEEEeeehhccCCcceEEEEEc-HHHH
Confidence            999999998843     2233444544  6777899986   77766654 4544

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.83  E-value=8.9e-20  Score=163.95  Aligned_cols=198  Identities=16%  Similarity=0.122  Sum_probs=145.9

Q ss_pred             CCeeeeeccC-CcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc--EEE-cCChHHHHHHHHHHccccC
Q psy5413          65 NIRTVDIRSD-TISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA--AIF-VPSGTMGNLIAIMTHCDRR  140 (285)
Q Consensus        65 ~~~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~--~~~-~~~Gs~a~~~al~~~~~~~  140 (285)
                      +..+++|..+ ++..+.|.+.+++.+.......|.. +...++++.++++++.+.  .++ ++++++++..++++++ ++
T Consensus        33 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~~~~-~~  110 (361)
T PRK00950         33 PESIIKLGSNENPLGPSPKAVEAIEKELSKIHRYPE-PDAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTFI-DP  110 (361)
T ss_pred             ccceEEccCCCCCCCCCHHHHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHHHhc-CC
Confidence            3478999865 5556788999888766544445553 346899999999998754  466 4455677788888776 58


Q ss_pred             CCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCee
Q psy5413         141 DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT  220 (285)
Q Consensus       141 g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~  220 (285)
                      |+.|+++++.+.....   ..      +..|.+++.++.++++.+|++++++.+++       ++++|++++|+||| |.
T Consensus       111 gd~vlv~~p~y~~~~~---~~------~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~v~~~~p~npt-G~  173 (361)
T PRK00950        111 GDEVIIPTPTFSYYEI---SA------KAHGAKPVYAKREEDFSLDVDSVLNAITE-------KTKVIFLCTPNNPT-GN  173 (361)
T ss_pred             CCEEEEcCCChHHHHH---HH------HHcCCEEEEeecCCCCCcCHHHHHHHhcc-------CCCEEEEeCCCCCC-CC
Confidence            9999988876543322   12      34588888888656667999999999876       78899999999999 89


Q ss_pred             eCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCC--eEEEecccccCc--ceeEEeecCccccc
Q psy5413         221 VLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVD--TVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       221 ~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~d--v~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      ++|   ++++.++|+++|+++|+||+|..+.     .+....|  +++.|+||.+|.  .+.|++++++++++
T Consensus       174 ~~~---~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~  243 (361)
T PRK00950        174 LIP---EEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLID  243 (361)
T ss_pred             CcC---HHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCCHHHHH
Confidence            999   6777778889999999999987321     2222233  347899999875  46688888877653

>PRK05839 hypothetical protein; Provisional

Probab=99.83  E-value=1.2e-19  Score=163.94  Aligned_cols=200  Identities=14%  Similarity=0.054  Sum_probs=142.8

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc----C----CCcEEEcCChHHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA----G----KEAAIFVPSGTMGNLIAIMT  135 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~----g----~~~~~~~~~Gs~a~~~al~~  135 (285)
                      |..+++|..+.+.. +++.+.+++.+.......|....+..+|++.+++++    |    .+.+++++|+++++..++.+
T Consensus        23 ~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~  102 (374)
T PRK05839         23 EYKGLDLTIGEPQFETPKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQF  102 (374)
T ss_pred             CCCeEEcCCCCCCCCCCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHH
Confidence            56889999877765 455788887765433456665556678888887664    4    23357777778888888777


Q ss_pred             ccc-cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         136 HCD-RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       136 ~~~-~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      ++. ++|+.|+++.+++.......         ...|++++.++.+++  +.+|+++.  .+ +       ++++|++++
T Consensus       103 ~~~~~~gd~vlv~~P~y~~~~~~~---------~~~g~~v~~v~~~~~~~~~~d~~~~--~~-~-------~~k~v~i~n  163 (374)
T PRK05839        103 VLFDKQNPTIAYPNPFYQIYEGAA---------IASRAKVLLMPLTKENDFTPSLNEK--EL-Q-------EVDLVILNS  163 (374)
T ss_pred             HhcCCCCCEEEECCCCchhhHHHH---------HhcCCEEEEeecccccCCcCCcchh--hh-c-------cccEEEEeC
Confidence            642 47888999888775544322         345889999987533  44554432  22 3       589999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------hhc--------cc-CC-eEEEecccccC--cceeE
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------EVC--------AS-VD-TVMFCLSKGLG--APVGS  274 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~--------~~-~d-v~~~s~sK~l~--~p~gg  274 (285)
                      |+||| |.+++.+++++|+++|++||+++|+||+|..+.      .+.        .. -. +++.|+||.++  |.+.|
T Consensus       164 P~NPT-G~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG  242 (374)
T PRK05839        164 PNNPT-GRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSG  242 (374)
T ss_pred             CCCCc-CcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeE
Confidence            99999 999999999999999999999999999977221      111        01 12 34899999754  47888


Q ss_pred             EeecCccccc
Q psy5413         275 ILAGPEEFIQ  284 (285)
Q Consensus       275 ~~~~~~~~i~  284 (285)
                      ++++++++++
T Consensus       243 ~ii~~~~~~~  252 (374)
T PRK05839        243 FIAGDASILK  252 (374)
T ss_pred             EEecCHHHHH
Confidence            8888877654

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.83  E-value=9.9e-20  Score=164.90  Aligned_cols=161  Identities=21%  Similarity=0.192  Sum_probs=129.0

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .++...+|++.++++.|.+.++.++||++|+..++.+++ ++||+|+++++.|..+.... ...      ...|.++..+
T Consensus        59 ~~p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~~l~all-~~Gd~Vl~~~~~y~~t~~~~~~~~------~~~gi~~~~~  131 (388)
T PRK07811         59 GNPTRTALEEQLAALEGGAYGRAFSSGMAATDCLLRAVL-RPGDHIVIPNDAYGGTFRLIDKVF------TRWGVEYTPV  131 (388)
T ss_pred             CCccHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHHh-CCCCEEEEcCCCchHHHHHHHHhC------cCCCeEEEEe
Confidence            567899999999999999999888999999999999887 69999999887775432211 111      2346666665


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~  254 (285)
                      +.     .|++++++++++       ++++|++++|+||+ |.+.+   +++|+++|+++|+++|+|+++...   ..+.
T Consensus       132 d~-----~d~e~l~~~i~~-------~tklV~ie~p~NPt-g~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~~~p~~  195 (388)
T PRK07811        132 DL-----SDLDAVRAAITP-------RTKLIWVETPTNPL-LSITD---IAALAELAHDAGAKVVVDNTFASPYLQQPLA  195 (388)
T ss_pred             CC-----CCHHHHHHhcCc-------CCeEEEEECCCCCc-ceecC---HHHHHHHHHHcCCEEEEECCCCccccCCchh
Confidence            54     389999999987       79999999999999 89988   999999999999999999998722   2233


Q ss_pred             ccCCeEEEecccccCcc---eeEEeec-Cccc
Q psy5413         255 ASVDTVMFCLSKGLGAP---VGSILAG-PEEF  282 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~p---~gg~~~~-~~~~  282 (285)
                      .++|+++.|++|+++++   +||+++. ++++
T Consensus       196 ~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l  227 (388)
T PRK07811        196 LGADVVVHSTTKYIGGHSDVVGGALVTNDEEL  227 (388)
T ss_pred             hCCcEEEecCceeecCCCCcEEEEEEECCHHH
Confidence            57899999999999985   4676654 4554

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.83  E-value=3.1e-19  Score=163.43  Aligned_cols=157  Identities=23%  Similarity=0.247  Sum_probs=128.5

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|...+|++.++++.|.+.+++++||++|+..++.+++ ++|++|+++...|..+.... ...      ...|..++.+
T Consensus        61 ~~p~~~~le~~lA~l~g~~~al~~~SG~~Ai~~al~all-~pGd~VIv~~~~y~~t~~~~~~~~------~~~G~~v~~v  133 (427)
T PRK05994         61 TNPTNAVLEERVAALEGGTAALAVASGHAAQFLVFHTLL-QPGDEFIAARKLYGGSINQFGHAF------KSFGWQVRWA  133 (427)
T ss_pred             CCccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHh-CCCCEEEEecCcchhHHHHHHHHH------HhcCcEEEEE
Confidence            467789999999999999999999999999999999876 69999998876664332110 011      2357777777


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC---hhhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP---LAEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~---~~~~~  254 (285)
                      +.     .|+++++++|++       ++++|++++|+||+ |.+.|   +++|+++|++||+++|+|++++.   ...+.
T Consensus       134 d~-----~d~~~l~~ai~~-------~tklV~vesp~Npt-G~v~d---l~~I~~la~~~gi~livD~a~a~~~~~~pl~  197 (427)
T PRK05994        134 DA-----DDPASFERAITP-------RTKAIFIESIANPG-GTVTD---IAAIAEVAHRAGLPLIVDNTLASPYLIRPIE  197 (427)
T ss_pred             CC-----CCHHHHHHhcCc-------CCeEEEEECCCCCC-CeecC---HHHHHHHHHHcCCEEEEECCccccccCCccc
Confidence            64     288999999987       89999999999999 89999   99999999999999999999882   22334


Q ss_pred             ccCCeEEEecccccCc---ceeEEeec
Q psy5413         255 ASVDTVMFCLSKGLGA---PVGSILAG  278 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~---p~gg~~~~  278 (285)
                      .++|+++.|++|++++   ++||+++.
T Consensus       198 ~gaDivv~S~tK~lgg~~~~~gG~v~~  224 (427)
T PRK05994        198 HGADIVVHSLTKFLGGHGNSMGGIIVD  224 (427)
T ss_pred             cCCcEEEEcCccccCCCCCcEEEEEEe
Confidence            6899999999999997   57888874

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.83  E-value=1.7e-19  Score=163.00  Aligned_cols=201  Identities=14%  Similarity=0.125  Sum_probs=147.0

Q ss_pred             eeeeeccCCcCC-CcHHHHHHHHhcccC---CCCccCChhHHHHHHHHHhHcCCC----------cEEEcCChHHHHHHH
Q psy5413          67 RTVDIRSDTISK-PTMEMKNYMFNCEVG---DDVYLEDPTCKELQEKAAKLAGKE----------AAIFVPSGTMGNLIA  132 (285)
Q Consensus        67 ~~~~~~~~~~~~-~~~~v~~a~~~~~~~---~~~y~~~~~~~~l~~~la~~~g~~----------~~~~~~~Gs~a~~~a  132 (285)
                      .+++|..+.+.. +++.+.+++.+....   ...|. .+...+|++.++++++..          .+++++|+++++..+
T Consensus        29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~  107 (374)
T PRK02610         29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQGIESNRYP-DGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSL  107 (374)
T ss_pred             ceeEecCCCCCCCCCHHHHHHHHHHHhhcccccCCC-CCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHH
Confidence            467888666554 677999998875443   13464 467899999999998732          247778888888877


Q ss_pred             HHHccccCCC-eEEecCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413         133 IMTHCDRRDS-EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCV  210 (285)
Q Consensus       133 l~~~~~~~g~-~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i  210 (285)
                      +.+++ .+|+ .|+++.+++.....   ..      +..|.+++.++.++ ++.+|++++++++++.   ...++++|++
T Consensus       108 ~~~~~-~~g~~~Vlv~~P~y~~~~~---~~------~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~k~i~l  174 (374)
T PRK02610        108 LIATC-LGGEGSILVAEPTFSMYGI---LA------QTLGIPVVRVGRDPETFEIDLAAAQSAIEQT---QNPPVRVVFV  174 (374)
T ss_pred             HHHHc-CCCCCeEEEcCCChHHHHH---HH------HHcCCEEEEecCCcccCCCCHHHHHHHHHhh---cCCCceEEEE
Confidence            77666 3665 78888887654433   22      34588888888644 3679999999998631   0127899999


Q ss_pred             ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------hhcccCC-eEEEecccccCc--ceeEEeecCcc
Q psy5413         211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------EVCASVD-TVMFCLSKGLGA--PVGSILAGPEE  281 (285)
Q Consensus       211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~~~~d-v~~~s~sK~l~~--p~gg~~~~~~~  281 (285)
                      ++|+||| |.+++.++++++.++|  +++++|+||+|..+.      .+...-+ +++.||||.+|.  .+.|+++++++
T Consensus       175 ~~P~NPT-G~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~~  251 (374)
T PRK02610        175 VHPNSPT-GNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAAHRVGYAIGHPE  251 (374)
T ss_pred             eCCCCCC-CCCCCHHHHHHHHhcc--CCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCcccceeeeecCHH
Confidence            9999999 9999999999999876  499999999987321      1122223 448999998854  78888888887


Q ss_pred             ccc
Q psy5413         282 FIQ  284 (285)
Q Consensus       282 ~i~  284 (285)
                      +++
T Consensus       252 l~~  254 (374)
T PRK02610        252 LIA  254 (374)
T ss_pred             HHH
Confidence            764

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.83  E-value=1.3e-19  Score=166.29  Aligned_cols=223  Identities=14%  Similarity=0.145  Sum_probs=142.7

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCCCcc-CChhHHH
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYL-EDPTCKE  105 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~-~~~~~~~  105 (285)
                      |..+.++.+.+.|+..++.+++.+..|+..                  +.++.+|+|.+|+.+++.....+. ..+...+
T Consensus        31 p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~   92 (431)
T PRK06209         31 PGFIQRGSGAHVWDVDGNEYIEYGMGLRAV------------------GLGHAYPPVVEAVREALQDGCNFTRPSAIELD   92 (431)
T ss_pred             CeEEEeccCCEEEeCCCCEEEEccccccch------------------hcCCCCHHHHHHHHHHHHhCcCCCCCCHHHHH
Confidence            455666777777775555544444443332                  347799999999998877533343 2333457


Q ss_pred             HHHHHHhHcC-CCcEEEcCChHHHHHHHHHHccccCCCeEEe-c--CCcceeeec-ccccccccccccccce--eeeeee
Q psy5413         106 LQEKAAKLAG-KEAAIFVPSGTMGNLIAIMTHCDRRDSEIIV-G--DCSHIMLWE-QGGASQTSVYSQIGRV--LMRGVT  178 (285)
Q Consensus       106 l~~~la~~~g-~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~-~--~~~h~~~~~-~~~~~~~~~~~~~~g~--~~~~~~  178 (285)
                      +.++|++++. .+.++|++|||+|++.|++++....|+..++ .  ..+|..... .+...      ...+.  ......
T Consensus        93 la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~------~~~~~~~~~~~~~  166 (431)
T PRK06209         93 AAESFLELIDGADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTP------MSAGIPASVSALT  166 (431)
T ss_pred             HHHHHHHhCCccceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCC------CCCCCChhHhccc
Confidence            8899998873 5678999999999999999988666765443 2  234421100 00000      00000  000000


Q ss_pred             cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh----hc
Q psy5413         179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE----VC  254 (285)
Q Consensus       179 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~----~~  254 (285)
                      . .....|+++++++++.    +.+++++|++|+.+    |...|.+++++|+++|++||+++|+||+++++..    ..
T Consensus       167 ~-~~~~~d~~~l~~~l~~----~~~~~aavi~Epv~----g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~g~~  237 (431)
T PRK06209        167 V-TFRYNDIASLEALFED----HPGRIACVILEPAT----ADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHMRGAQ  237 (431)
T ss_pred             c-ccCCCCHHHHHHHHHh----CCCCEEEEEEcccc----CCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcchhh
Confidence            1 1112489999999865    23478999999987    4577889999999999999999999999885422    11


Q ss_pred             ccCCeE--EEecccccCc--ceeEEeecCcccc
Q psy5413         255 ASVDTV--MFCLSKGLGA--PVGSILAGPEEFI  283 (285)
Q Consensus       255 ~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i  283 (285)
                      +..++.  +.+++|.+++  |.++++ ++++++
T Consensus       238 ~~~gv~PDi~t~gK~lggG~p~~av~-~~~~i~  269 (431)
T PRK06209        238 KLYGIVPDLSCFGKALGNGFAVSALA-GKREYM  269 (431)
T ss_pred             HHhCCCcceeeehhhhcCCcccEEEE-EHHHHH
Confidence            222332  5778899987  766544 555554

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.83  E-value=1.6e-19  Score=158.57  Aligned_cols=192  Identities=21%  Similarity=0.287  Sum_probs=150.3

Q ss_pred             eeeccCCcCCCcHHHHHHHHhcccCC-------CCcc--CChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHcc
Q psy5413          69 VDIRSDTISKPTMEMKNYMFNCEVGD-------DVYL--EDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        69 ~~~~~~~~~~~~~~v~~a~~~~~~~~-------~~y~--~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~  137 (285)
                      +.|.+...+...|+++++|.......       ..|+  .....++.|+.+++++|.+.  ++|+++||+++..+++.++
T Consensus         3 iYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~   82 (386)
T COG1104           3 IYLDNAATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAA   82 (386)
T ss_pred             ccccccccCCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhH
Confidence            45555555778999999998766532       1222  23457889999999998764  6999999999999999732


Q ss_pred             ---c--cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         138 ---D--RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       138 ---~--~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                         .  +.|+++|++..-|.++.......      +..|..+..+|.+.++.+|+++|+++|++       +|.+|.+..
T Consensus        83 ~a~~~~~~~~HIIts~iEH~aVl~~~~~L------e~~g~~Vtyl~V~~~G~v~~e~L~~al~~-------~T~LVSim~  149 (386)
T COG1104          83 LAYRNAQKGKHIITSAIEHPAVLNTCRYL------ERQGFEVTYLPVDSNGLVDLEQLEEALRP-------DTILVSIMH  149 (386)
T ss_pred             HhhhcccCCCeEEEcccccHHHHHHHHHH------HhcCCeEEEeCCCCCCeEcHHHHHHhcCC-------CceEEEEEe
Confidence               1  14678999988887765533222      34588888999888999999999999998       899999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCc-ceeEEee
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGA-PVGSILA  277 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~-p~gg~~~  277 (285)
                      .||.+ |.+.|   +++|.++|+++|+++|+|.+|+ +   +.....++|.+++|.||..|. ..|+..+
T Consensus       150 aNnE~-G~IQp---I~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~GpkGiGaLyv  215 (386)
T COG1104         150 ANNET-GTIQP---IAEIGEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYV  215 (386)
T ss_pred             cccCe-eeccc---HHHHHHHHHHcCCeEEEehhhhcCceeccccccCcceEEeehhhccCCCceEEEEE
Confidence            99999 99999   9999999999999999999988 3   222233699999999998665 4555444

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.83  E-value=4.2e-19  Score=162.31  Aligned_cols=160  Identities=19%  Similarity=0.190  Sum_probs=128.0

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT  178 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~  178 (285)
                      .+|...+|++.++++.|.+.+++++||++|+..++.+++ ++|++|+++...|..+......     .....|.+++.++
T Consensus        67 ~~p~~~~Le~~lA~l~g~~~av~~sSG~aAi~~al~all-~~Gd~Vv~~~~~y~~t~~~~~~-----~l~~~Gi~v~~vd  140 (436)
T PRK07812         67 MNPTQDVVEQRIAALEGGVAALLLASGQAAETFAILNLA-GAGDHIVSSPRLYGGTYNLFHY-----TLPKLGIEVSFVE  140 (436)
T ss_pred             CCchHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHh-CCCCEEEEeCCcchHHHHHHHH-----HhhcCeEEEEEEC
Confidence            467799999999999999999999999999999998876 6899998877655443221100     0023577777664


Q ss_pred             cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC---hhhhcc
Q psy5413         179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP---LAEVCA  255 (285)
Q Consensus       179 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~---~~~~~~  255 (285)
                      . .   .|++++++++++       ++++|++++++||+ |.+.|   +++|+++|+++|+++|+|++++.   ...+..
T Consensus       141 d-~---~d~e~l~~ai~~-------~tklV~ie~~sNp~-G~v~D---l~~I~~la~~~gi~liVD~t~a~~~~~~pl~~  205 (436)
T PRK07812        141 D-P---DDLDAWRAAVRP-------NTKAFFAETISNPQ-IDVLD---IPGVAEVAHEAGVPLIVDNTIATPYLIRPLEH  205 (436)
T ss_pred             C-C---CCHHHHHHhCCC-------CCeEEEEECCCCCC-CeecC---HHHHHHHHHHcCCEEEEECCCcccccCCchhc
Confidence            2 1   289999999987       89999999999999 99999   99999999999999999999872   233446


Q ss_pred             cCCeEEEecccccCc---ceeEEeecC
Q psy5413         256 SVDTVMFCLSKGLGA---PVGSILAGP  279 (285)
Q Consensus       256 ~~dv~~~s~sK~l~~---p~gg~~~~~  279 (285)
                      ++|+++.|++|++++   -+||+++.+
T Consensus       206 GaDivv~S~tK~lgg~G~~i~G~vv~~  232 (436)
T PRK07812        206 GADIVVHSATKYLGGHGTAIAGVIVDG  232 (436)
T ss_pred             CCCEEEEecccccCCCCCeEEEEEEcC
Confidence            899999999999988   467777754

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.82  E-value=1.7e-19  Score=163.54  Aligned_cols=197  Identities=19%  Similarity=0.221  Sum_probs=147.0

Q ss_pred             CCeeeeeccCC-cCC-CcHHHHHHHHhcccC----CCCc----cCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDT-ISK-PTMEMKNYMFNCEVG----DDVY----LEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~-~~~-~~~~v~~a~~~~~~~----~~~y----~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~  134 (285)
                      |++++||.+++ +++ ++|.+.+++.++...    ...|    +..+...++++.+++++|.+..+++++|+++++.++.
T Consensus        32 g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~~a~~  111 (385)
T TIGR01825        32 GKEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLS  111 (385)
T ss_pred             CceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHH
Confidence            67889999765 566 788999998876542    1122    2345688999999999898878888999999999998


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      +++ .+||.|++.+++|........+         .+.++..++     .+|++++++.+.+..   ..++++|++++++
T Consensus       112 ~~~-~~gd~vi~~~~~~~~~~~~~~~---------~g~~~~~~~-----~~d~~~l~~~l~~~~---~~~~~~v~~~~v~  173 (385)
T TIGR01825       112 ALL-RKGDIVLSDELNHASIIDGLRL---------TKATKKIYK-----HADMDDLDRVLRENP---SYGKKLIVTDGVF  173 (385)
T ss_pred             HhC-CCCCEEEEEccccHHHHHHHHh---------cCCceEEeC-----CCCHHHHHHHHHhhc---cCCCeEEEEecCC
Confidence            877 5899999888888655321111         244444432     368888988886521   1268999999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C-hh----------hhcccCCeEEEecccccCcceeEEeecCccc
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P-LA----------EVCASVDTVMFCLSKGLGAPVGSILAGPEEF  282 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~-~~----------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~  282 (285)
                      |++ |.+.|   +++|.++|++||+++|+||+|. + ..          ......++++.|+||++++ .||++++++++
T Consensus       174 ~~t-G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~gG~~~~~~~~  248 (385)
T TIGR01825       174 SMD-GDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGV-VGGYAAGHKEL  248 (385)
T ss_pred             cCC-CCccC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhc-CCCEEecCHHH
Confidence            999 88999   9999999999999999999986 2 11          1113456778999999976 56888887776


Q ss_pred             cc
Q psy5413         283 IQ  284 (285)
Q Consensus       283 i~  284 (285)
                      ++
T Consensus       249 ~~  250 (385)
T TIGR01825       249 IE  250 (385)
T ss_pred             HH
Confidence            54

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>KOG1404|consensus

Probab=99.82  E-value=4.4e-20  Score=159.20  Aligned_cols=227  Identities=17%  Similarity=0.159  Sum_probs=152.6

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCc----CCCcHHHHHHHHhcccC----CCCcc
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTI----SKPTMEMKNYMFNCEVG----DDVYL   98 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~a~~~~~~~----~~~y~   98 (285)
                      |..+.++....+++..                      |++++|+.++.+    +++||+|.+++.+|+..    ...|.
T Consensus        33 Pl~Iv~~~~~ylyDe~----------------------G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~H~t~~~~   90 (442)
T KOG1404|consen   33 PLVIVRGEGQYLYDEE----------------------GRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYHTTSGYL   90 (442)
T ss_pred             CceEEecceEEEEcCC----------------------CceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhEEeecccc
Confidence            5555566666666654                      445555554433    56999999999988853    23555


Q ss_pred             CChhHHHHHHHHHhHc--CCCcEEEcCChHHHHHHHHHHccccCCCe-EE-ecCCcceeeecccccccccccccc-----
Q psy5413          99 EDPTCKELQEKAAKLA--GKEAAIFVPSGTMGNLIAIMTHCDRRDSE-II-VGDCSHIMLWEQGGASQTSVYSQI-----  169 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~--g~~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi-~~~~~h~~~~~~~~~~~~~~~~~~-----  169 (285)
                      ..| ..++.+.|++.+  +.+.++|+||||+||+.|++++..+.|.. +| ..+.||+.+.....+.....+...     
T Consensus        91 ~~p-i~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~  169 (442)
T KOG1404|consen   91 NPP-IHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVA  169 (442)
T ss_pred             CCc-HHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCC
Confidence            444 777777777775  34557999999999999999998777753 33 358889887665544421222111     


Q ss_pred             cceeeeeeecCCCC----C-------CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC
Q psy5413         170 GRVLMRGVTNQKDG----T-------FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN  238 (285)
Q Consensus       170 ~g~~~~~~~~~~~~----~-------~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g  238 (285)
                      .+.....-|..+.+    .       --.+++++.|...   ....+++.+.|+.++.+|-..+|+.+|++..++|+++|
T Consensus       170 ~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~---~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~G  246 (442)
T KOG1404|consen  170 SGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYD---GPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRG  246 (442)
T ss_pred             CcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhc---CCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcC
Confidence            12211111211111    0       0124455555432   33469999999999999666788999999999999999


Q ss_pred             CeEEEeCccCChhh-----hcccCCeE--EEecccccCc--ceeEEeecC
Q psy5413         239 IPVHMDGARLPLAE-----VCASVDTV--MFCLSKGLGA--PVGSILAGP  279 (285)
Q Consensus       239 i~li~Dea~~~~~~-----~~~~~dv~--~~s~sK~l~~--p~gg~~~~~  279 (285)
                      +++|.||+++++..     -.+..|++  +.|++|++|+  |+|+++++.
T Consensus       247 gl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGnG~Pl~AVvtt~  296 (442)
T KOG1404|consen  247 GLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGNGFPLGAVVTTP  296 (442)
T ss_pred             CEEEehhhhhccccccccccccccCCCccHHHHHhhccCCCcceeeecCH
Confidence            99999999884432     23455777  8899999988  999887764

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.82  E-value=2.4e-19  Score=164.79  Aligned_cols=238  Identities=13%  Similarity=0.080  Sum_probs=154.9

Q ss_pred             hcccCCCCCcc--cccccccccccc-CCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHH--HHHhcccC
Q psy5413          19 REVLTLPTPAL--VESTPLSRSWSD-NGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKN--YMFNCEVG   93 (285)
Q Consensus        19 ~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--a~~~~~~~   93 (285)
                      +++.+...|..  +.++.+.+.|+. .++.+++.+..|+..                  +.++.+|+|.+  ++.+++..
T Consensus        17 ~~~~~~~~p~~~~i~~a~G~~l~D~~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~~~ai~~ql~~   78 (443)
T PRK08297         17 RHILVDGFDLVLDLERSQGSYLVDARTGRRYLDMFTFFASS------------------ALGMNHPALADDPEFRAELGR   78 (443)
T ss_pred             HHHhhcCCCcceEEEeccCCEEEECCCCCEeeecccCHhhh------------------cCCCCChHHhhHHHHHHHHHH
Confidence            44554444555  578889999984 666666666655543                  33789999999  99888742


Q ss_pred             ------CCCccCChhHHHHHHHHHhHc---CCCcEEEcCChHHHHHHHHHHcccc-------CC------CeEEe-cCCc
Q psy5413          94 ------DDVYLEDPTCKELQEKAAKLA---GKEAAIFVPSGTMGNLIAIMTHCDR-------RD------SEIIV-GDCS  150 (285)
Q Consensus        94 ------~~~y~~~~~~~~l~~~la~~~---g~~~~~~~~~Gs~a~~~al~~~~~~-------~g------~~vi~-~~~~  150 (285)
                            ......++...++.++|+++.   +.+.++|++|||+|++.|++++.+.       +|      .+||. ...|
T Consensus        79 l~~~~~~~~~~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~y  158 (443)
T PRK08297         79 AALNKPSNSDVYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAF  158 (443)
T ss_pred             hhhhccccCCcCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCc
Confidence                  111223566888899998886   2467899999999999999998532       12      23443 6788


Q ss_pred             ceeeecccccccc-cccccccce-ee--eeeecC--C--CCC---------CCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         151 HIMLWEQGGASQT-SVYSQIGRV-LM--RGVTNQ--K--DGT---------FDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       151 h~~~~~~~~~~~~-~~~~~~~g~-~~--~~~~~~--~--~~~---------~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      |+.+..+..+... ..+...+.. ..  +..+..  +  ...         .+++++++.+.+    +.+++++|++|++
T Consensus       159 HG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~iAavI~EPi  234 (443)
T PRK08297        159 HGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFER----HPHDIACFIAEPI  234 (443)
T ss_pred             CCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHh----CCCcEEEEEEccc
Confidence            9887543333211 111111110 00  001110  0  000         134566677764    4458999999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCcceeEEeecCc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGAPVGSILAGPE  280 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~p~gg~~~~~~  280 (285)
                      ++..|..+.|++++++|+++|++||+++|+||+++++     ....++.++.  +.+++|++.  .+|++++++
T Consensus       235 ~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~--~~a~l~~~~  306 (443)
T PRK08297        235 QGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAFGKKTQ--VCGIMAGRR  306 (443)
T ss_pred             cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEEeccccc--ccceecchH
Confidence            9998666688999999999999999999999998844     2233344444  556789973  577777654

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.82  E-value=1.1e-19  Score=158.97  Aligned_cols=168  Identities=20%  Similarity=0.268  Sum_probs=129.2

Q ss_pred             CCCccCChhHHHHHHHHHhHcCCCcEEE-cCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccce
Q psy5413          94 DDVYLEDPTCKELQEKAAKLAGKEAAIF-VPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRV  172 (285)
Q Consensus        94 ~~~y~~~~~~~~l~~~la~~~g~~~~~~-~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~  172 (285)
                      ++.+.+...+.++++.+++++|.+..++ ++++++++.+++.+++ ++||+|+++.+.|.+.......         .|.
T Consensus        52 d~l~~~~g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~-~~gd~Vlv~~~~h~s~~~~~~~---------~g~  121 (294)
T cd00615          52 DDLLDPTGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVC-GPGDKILIDRNCHKSVINGLVL---------SGA  121 (294)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcC-CCCCEEEEeCCchHHHHHHHHH---------CCC
Confidence            3444556669999999999999988865 7777899999999887 6999999999999776543222         366


Q ss_pred             eeeeeecCCC------CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413         173 LMRGVTNQKD------GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA  246 (285)
Q Consensus       173 ~~~~~~~~~~------~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea  246 (285)
                      +++.++...+      +.+|+++++++++++     .++++|++++| +++ |.++|   +++|+++|+++|+++|+||+
T Consensus       122 ~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~-----~~~k~v~l~~p-~~~-G~~~d---l~~I~~~~~~~g~~livDeA  191 (294)
T cd00615         122 VPVYLKPERNPYYGIAGGIPPETFKKALIEH-----PDAKAAVITNP-TYY-GICYN---LRKIVEEAHHRGLPVLVDEA  191 (294)
T ss_pred             EEEEecCccCcccCcCCCCCHHHHHHHHHhC-----CCceEEEEECC-CCC-CEecC---HHHHHHHHHhcCCeEEEECc
Confidence            7666654322      368999999999751     26889999988 466 99999   99999999999999999999


Q ss_pred             cCCh---------hhhcccCCeEEEecccccCcc-eeEEeecCcc
Q psy5413         247 RLPL---------AEVCASVDTVMFCLSKGLGAP-VGSILAGPEE  281 (285)
Q Consensus       247 ~~~~---------~~~~~~~dv~~~s~sK~l~~p-~gg~~~~~~~  281 (285)
                      |...         .....++|+++.|+||+++++ .|+++..+.+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~div~~S~hK~l~g~~~~~~l~~~~~  236 (294)
T cd00615         192 HGAHFRFHPILPSSAAMAGADIVVQSTHKTLPALTQGSMIHVKGD  236 (294)
T ss_pred             chhhhccCcccCcchhhcCCcEEEEchhcccchHhHHHHHHhCCC
Confidence            8721         112247899999999999885 4566555443

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.82  E-value=1.1e-19  Score=162.92  Aligned_cols=194  Identities=13%  Similarity=0.136  Sum_probs=144.7

Q ss_pred             CeeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCC
Q psy5413          66 IRTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRD  141 (285)
Q Consensus        66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g  141 (285)
                      ..+++|..+.+.. +++.+.+++.+.... ...|. ++...+|++.++++++.+  .+++++|+++++..++.+++ ++|
T Consensus        24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~y~-~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l~-~~g  101 (353)
T PRK05387         24 AKLIKLNTNENPYPPSPKVLEAIRAALGDDLRLYP-DPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFF-NHD  101 (353)
T ss_pred             cceeeccCCCCCCCCCHHHHHHHHHHhhhhhhcCC-CCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc-CCC
Confidence            4678998766555 577999998876543 34554 445689999999999764  46899999999999999887 599


Q ss_pred             CeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeee
Q psy5413         142 SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTV  221 (285)
Q Consensus       142 ~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~  221 (285)
                      |+|++++++|......   .      ...|.+++.++.++++.+|++++++           ++++|++++|+||| |.+
T Consensus       102 d~vlv~~P~y~~~~~~---~------~~~g~~~~~v~~~~~~~~d~~~l~~-----------~~~~v~~~~P~NPt-G~~  160 (353)
T PRK05387        102 RPLLFPDITYSFYPVY---A------GLYGIPYEEIPLDDDFSIDVEDYLR-----------PNGGIIFPNPNAPT-GIA  160 (353)
T ss_pred             CEEEEeCCCHHHHHHH---H------HHcCCEEEEeecCCCCCCCHHHHHh-----------cCCEEEEeCCCCCC-CCC
Confidence            9999998887443321   2      3458888888886677789998762           34688999999999 999


Q ss_pred             CCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccC--CeEEEecccccCc--ceeEEeecCccccc
Q psy5413         222 LPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASV--DTVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       222 ~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~--dv~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      ++.+++++|++.++  |+++|+||+|..+     ..+....  .+++.|+||.++.  .+.|++++++++++
T Consensus       161 ~~~~~~~~l~~~~~--~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~  230 (353)
T PRK05387        161 LPLAEIERILAANP--DSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPELIE  230 (353)
T ss_pred             CCHHHHHHHHHhCC--CcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecCHHHHH
Confidence            99777777776533  9999999998622     1111212  3559999998763  67788888877654

>PLN02231 alanine transaminase

Probab=99.82  E-value=2.6e-19  Score=167.72  Aligned_cols=206  Identities=12%  Similarity=0.091  Sum_probs=145.5

Q ss_pred             eeeeeccCCcCCCcHHHHHHHHhccc---C--CCCccCChhHHHHHHHHHhHc----CC----CcEEEcCChHHHHHHHH
Q psy5413          67 RTVDIRSDTISKPTMEMKNYMFNCEV---G--DDVYLEDPTCKELQEKAAKLA----GK----EAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~a~~~~~~---~--~~~y~~~~~~~~l~~~la~~~----g~----~~~~~~~~Gs~a~~~al  133 (285)
                      .+++|..+....+...+.++. +.+.   +  ...|+...+..+|++.+++++    |.    +.+++++|+++|+..++
T Consensus       130 ~~i~~~~~~~~fp~~~i~~a~-~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~  208 (534)
T PLN02231        130 SLLDKSETHGLFSADAIERAW-QILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMM  208 (534)
T ss_pred             ccCCCCCccccCCHHHHHHHH-HHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHH
Confidence            445555444444444444443 3322   2  245887788999999999986    21    34688999999999999


Q ss_pred             HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413         134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLVCVE  211 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~i~  211 (285)
                      .+++..+||.|+++.++|.......         ...|.+++.++.+++  +.+|+++|++++++.. .++.++++|++.
T Consensus       209 ~~l~~~~gd~Vli~~P~Y~~y~~~~---------~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~-~~~~~~k~ivl~  278 (534)
T PLN02231        209 QLLIRSEKDGILCPIPQYPLYSASI---------ALHGGTLVPYYLDEATGWGLEISELKKQLEDAR-SKGITVRALVVI  278 (534)
T ss_pred             HHhccCCCCEEEEeCCCChhHHHHH---------HHcCCEEEEEecCcccCCCCCHHHHHHHHHHHh-hcCCCeEEEEEe
Confidence            9987447999999888775443322         234778888887543  5789999999986521 122368999999


Q ss_pred             cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----------hhcc-------cCCeE-EEeccccc---C
Q psy5413         212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----------EVCA-------SVDTV-MFCLSKGL---G  269 (285)
Q Consensus       212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----------~~~~-------~~dv~-~~s~sK~l---~  269 (285)
                      +|+||| |.+++.+++++|+++|++||++||+||+|..+.           .+..       ...++ +.|+||.+   .
T Consensus       279 nP~NPT-G~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~p  357 (534)
T PLN02231        279 NPGNPT-GQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGEC  357 (534)
T ss_pred             CCCCCC-CcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCC
Confidence            999999 999999999999999999999999999977211           1110       11244 78999965   3


Q ss_pred             cceeEEeec---Cccccc
Q psy5413         270 APVGSILAG---PEEFIQ  284 (285)
Q Consensus       270 ~p~gg~~~~---~~~~i~  284 (285)
                      |.++|+++.   ++++++
T Consensus       358 GlRiGy~~~~~~~~~l~~  375 (534)
T PLN02231        358 GKRGGYMEVTGFTSDVRE  375 (534)
T ss_pred             ccceEEEEEecCCHHHHH
Confidence            578888764   455543

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.82  E-value=1.1e-19  Score=163.99  Aligned_cols=198  Identities=17%  Similarity=0.104  Sum_probs=147.9

Q ss_pred             CeeeeeccC-CcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCC
Q psy5413          66 IRTVDIRSD-TISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDS  142 (285)
Q Consensus        66 ~~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~  142 (285)
                      ..+++|..+ ++..+.+.+.+++.+.......|..... .+|++.++++++.+  .+++++|+++++..++.+++ ++||
T Consensus        36 ~~~i~l~~~~~~~~~~~~~~~al~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~-~~gd  113 (371)
T PRK05166         36 PRIAKLGSNENPLGPSPAVRRAFADIAELLRLYPDPQG-RALREAIAARTGVPADRIILGNGSEDLIAVICRAVL-RPGD  113 (371)
T ss_pred             cceEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcH-HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhc-CCCC
Confidence            367888865 4455788899998764333345664443 58999999999864  46888888999988888876 6899


Q ss_pred             eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413         143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL  222 (285)
Q Consensus       143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~  222 (285)
                      +|++..+.|.....   ..      ...|.+++.++.++++.+|++++++++++       ++++|++++|+||| |.++
T Consensus       114 ~vli~~P~y~~~~~---~~------~~~g~~~~~v~~~~~~~~~~~~l~~~~~~-------~~~~v~l~~p~NPt-G~~~  176 (371)
T PRK05166        114 RVVTLYPSFPLHED---YP------TMMGARVERVTVTPDLGFDLDALCAAVAR-------APRMLMFSNPSNPV-GSWL  176 (371)
T ss_pred             EEEEcCCChHHHHH---HH------HHcCCeEEEeecCCCCCCCHHHHHHhhhc-------CCCEEEEeCCCCCC-CCCC
Confidence            99998877654322   22      34588898998866678899999999977       67899999999999 9999


Q ss_pred             CHHHHHHHHHHHHHcCCeEEEeCccCChh---------hhc-ccC-Ce-EEEecccccCc--ceeEEee-cCcccc
Q psy5413         223 PMQWLRELKARCQEHNIPVHMDGARLPLA---------EVC-ASV-DT-VMFCLSKGLGA--PVGSILA-GPEEFI  283 (285)
Q Consensus       223 ~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~-~~~-dv-~~~s~sK~l~~--p~gg~~~-~~~~~i  283 (285)
                      +.+++++|+++|++ ++++|+||+|..+.         ... ... .+ ++.|+||.++.  .+.|+++ ++++++
T Consensus       177 ~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~  251 (371)
T PRK05166        177 TADQLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELV  251 (371)
T ss_pred             CHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHH
Confidence            99999999998874 89999999976111         111 122 34 48999998863  6677755 566654

>PRK06855 aminotransferase; Validated

Probab=99.82  E-value=5.5e-19  Score=162.46  Aligned_cols=198  Identities=18%  Similarity=0.065  Sum_probs=144.4

Q ss_pred             CCeeeeeccCCcC----CCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcC----C----CcEEEcCChHHHHH
Q psy5413          65 NIRTVDIRSDTIS----KPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAG----K----EAAIFVPSGTMGNL  130 (285)
Q Consensus        65 ~~~~~~~~~~~~~----~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g----~----~~~~~~~~Gs~a~~  130 (285)
                      |.+++++..+++.    .+++.+.+++.+....  ...|.+..+..+||+.+++++.    .    +.+++++|+++|+.
T Consensus        31 g~~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~  110 (433)
T PRK06855         31 GVKITWENIGDPIAKGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIA  110 (433)
T ss_pred             cccccccccCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHH
Confidence            4566777777763    3566777787765532  2457777778899999999863    2    24678888999998


Q ss_pred             HHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEE
Q psy5413         131 IAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLV  208 (285)
Q Consensus       131 ~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v  208 (285)
                      .++. ++ .+||.|++++++|......  ..      ...|.+++.++.++  ++.+|+++|+++++.     ..+++++
T Consensus       111 ~~~~-l~-~~Gd~Vlv~~P~Y~~~~~~--~~------~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~-----~~~~~~i  175 (433)
T PRK06855        111 KIYG-LL-RREARVIGPSPAYSTHSSA--EA------AHAGYPPVTYRLDPENNWYPDLDDLENKVKY-----NPSIAGI  175 (433)
T ss_pred             HHHH-hc-CCCCeEEEeCCCCchHHHH--HH------HhcCCeEEEEecccccCCCCCHHHHHHHHhc-----CCCceEE
Confidence            8885 55 5899999988887543211  11      12366777777643  346899999999964     1157899


Q ss_pred             EEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhcccC-CeEEEecccccCc--ceeEE
Q psy5413         209 CVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVCASV-DTVMFCLSKGLGA--PVGSI  275 (285)
Q Consensus       209 ~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~~~~-dv~~~s~sK~l~~--p~gg~  275 (285)
                      ++++|+||| |.+++.+++++|+++|++||++||+||+|..+          ..+.... .+++.|+||.+++  .+.|+
T Consensus       176 ~l~~P~NPT-G~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~  254 (433)
T PRK06855        176 LLINPDNPT-GAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGW  254 (433)
T ss_pred             EEECCCCCC-CcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEE
Confidence            999999999 99999999999999999999999999998722          1121222 2559999998863  77778


Q ss_pred             eec
Q psy5413         276 LAG  278 (285)
Q Consensus       276 ~~~  278 (285)
                      ++.
T Consensus       255 ii~  257 (433)
T PRK06855        255 IEV  257 (433)
T ss_pred             EEE
Confidence            875

>PRK06460 hypothetical protein; Provisional

Probab=99.82  E-value=1.6e-19  Score=162.83  Aligned_cols=163  Identities=19%  Similarity=0.162  Sum_probs=124.9

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeec-ccccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWE-QGGASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~-~~~~~~~~~~~~~~g~~~~~~  177 (285)
                      .++...+|++.+++++|.+..+.+++|++|+..++.+++ ++||+|+++.+.+..++. .....      ...|.++..+
T Consensus        43 ~~p~~~~L~~~lA~l~g~~~~v~~~sG~~ai~~~l~al~-~~Gd~Vl~~~~~~~~ty~~~~~~~------~~~G~~v~~~  115 (376)
T PRK06460         43 ANPTVLELTKKIVELENAEMGVAFSSGMGAISTTALALL-KPGNSVLVHRDMFGRSYRFFTDYL------KNWGVNVDAS  115 (376)
T ss_pred             CCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEecCCcCcHHHHHHHHH------HhhCcEEEEE
Confidence            578899999999999999888888999999999998876 699999987654322211 00111      2447777766


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~  254 (285)
                      +..     +.+.+++.+++       ++++|++++|+||+ |.++|   +++|+++|+++|+++|+||++...   ..+.
T Consensus       116 ~~~-----~~~~l~~~~~~-------~tklV~l~sp~NPt-G~v~d---~~~I~~la~~~g~~vivDea~~~~~~~~~l~  179 (376)
T PRK06460        116 NPG-----SDNIIEKAKSK-------RYDVVFVENITNPL-LRVVD---ITELSKVCKENGSILIVDATFSTPINQKPLE  179 (376)
T ss_pred             CCC-----CHHHHHHhcCC-------CceEEEEECCCCCC-CcccC---HHHHHHHHHHcCCEEEEECCcCccccCChhh
Confidence            642     23445555544       78999999999999 99999   889999999999999999998832   1223


Q ss_pred             ccCCeEEEecccccCcc---eeEEeecCccccc
Q psy5413         255 ASVDTVMFCLSKGLGAP---VGSILAGPEEFIQ  284 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~p---~gg~~~~~~~~i~  284 (285)
                      .+.|+++.|+||+++|+   ++|++++++++++
T Consensus       180 ~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~  212 (376)
T PRK06460        180 LGADIVVHSASKFLAGHNDVIAGLAAGYGKLLN  212 (376)
T ss_pred             cCCCEEEeecceeccCCCCceEEEEecCHHHHH
Confidence            46799999999999873   6889999887654

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.82  E-value=5.1e-19  Score=163.91  Aligned_cols=204  Identities=12%  Similarity=0.036  Sum_probs=145.7

Q ss_pred             eeeeeccCCcCCCcHHHHHHHHhccc-------------CCCCccCChhHHHHHHHHHhHcC----------CCcEEEcC
Q psy5413          67 RTVDIRSDTISKPTMEMKNYMFNCEV-------------GDDVYLEDPTCKELQEKAAKLAG----------KEAAIFVP  123 (285)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~a~~~~~~-------------~~~~y~~~~~~~~l~~~la~~~g----------~~~~~~~~  123 (285)
                      .+++|.......+...+.+.+.+...             ....|....+..+|++.++++++          .+.+++++
T Consensus        39 g~i~L~~~En~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~  118 (468)
T PLN02450         39 GIIQMGLAENQLSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTA  118 (468)
T ss_pred             eeEEeehhHhHhhHHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEcc
Confidence            57888765555555566555554311             11236555567789999999874          12357888


Q ss_pred             ChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhccccccc
Q psy5413         124 SGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIH  201 (285)
Q Consensus       124 ~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~  201 (285)
                      |+++++..++.+++ .+||.|++++++|........        ...|.+++.++..  +++.+|++++++++++. ...
T Consensus       119 Ga~~al~~l~~~l~-~pGd~Vlv~~P~Y~~~~~~~~--------~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~-~~~  188 (468)
T PLN02450        119 GATSANETLMFCLA-EPGDAFLLPTPYYPGFDRDLK--------WRTGVEIVPIHCSSSNGFQITESALEEAYQQA-QKL  188 (468)
T ss_pred             ChHHHHHHHHHHhC-CCCCEEEECCCCCCchHHHHh--------hcCCcEEEEEecCCccCCcCCHHHHHHHHHHH-Hhc
Confidence            88999999999887 699999999888754432111        1248888888864  34567889999988652 112


Q ss_pred             CCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhcc--------cC-Ce-EE
Q psy5413         202 CASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVCA--------SV-DT-VM  261 (285)
Q Consensus       202 ~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~~--------~~-dv-~~  261 (285)
                      +.++++|++++|+||| |.+++.+.+++|+++|++||+++|+||+|..+          .....        .. .+ ++
T Consensus       189 ~~~~k~v~l~nP~NPT-G~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l  267 (468)
T PLN02450        189 NLKVKGVLITNPSNPL-GTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIV  267 (468)
T ss_pred             CCCeeEEEEecCCCCC-CcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEE
Confidence            3378999999999999 99999999999999999999999999998721          11111        11 23 39


Q ss_pred             EecccccC--cceeEEeecCcc
Q psy5413         262 FCLSKGLG--APVGSILAGPEE  281 (285)
Q Consensus       262 ~s~sK~l~--~p~gg~~~~~~~  281 (285)
                      .|+||.++  |.+.|+++++++
T Consensus       268 ~S~SK~~~l~GlRiG~li~~~~  289 (468)
T PLN02450        268 YSLSKDLGLPGFRVGAIYSNDE  289 (468)
T ss_pred             EeccccCCCCCccEEEEEECCH
Confidence            99999875  478888888654

>PRK06148 hypothetical protein; Provisional

Probab=99.82  E-value=4.7e-19  Score=176.83  Aligned_cols=216  Identities=15%  Similarity=0.171  Sum_probs=146.1

Q ss_pred             cCCeeeeeccC--CcCCCcHHHHHHHHhcccC---CCCccCChhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHc
Q psy5413          64 VNIRTVDIRSD--TISKPTMEMKNYMFNCEVG---DDVYLEDPTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        64 ~~~~~~~~~~~--~~~~~~~~v~~a~~~~~~~---~~~y~~~~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~  136 (285)
                      .|++++||.++  +.++.||+|.+|+.+++..   +..| .++...++.++|++.+.  .+.++|++|||+|++.|++++
T Consensus       622 dG~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l~~~~~~-~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklA  700 (1013)
T PRK06148        622 RGRAYLDCFNNVCHVGHAHPRVVAAAARQAARLNTNTRY-LHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLA  700 (1013)
T ss_pred             CCCEEEEcccChhhcCCCCHHHHHHHHHHHhhcCCcCCc-CCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHH
Confidence            36677777654  4567999999999988753   2233 46778899999999874  366899999999999999999


Q ss_pred             cccCCCe-EE-ecCCcceeeeccccccccccccccc------ceeeeeeecCCC--CC-CC-------HHHHHHHhcccc
Q psy5413         137 CDRRDSE-II-VGDCSHIMLWEQGGASQTSVYSQIG------RVLMRGVTNQKD--GT-FD-------LDEMEAKFSTAD  198 (285)
Q Consensus       137 ~~~~g~~-vi-~~~~~h~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~--~~-~d-------~~~l~~~i~~~~  198 (285)
                      ...+|+. || ....||+.+.....++. ..+...+      +......|....  +. .+       .+.+++.++. .
T Consensus       701 r~~tGr~~ii~~~~~YHG~t~~a~s~s~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~-~  778 (1013)
T PRK06148        701 RAHTGQRDAIVLDHAYHGTTTELIDLSP-YKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAA-M  778 (1013)
T ss_pred             HHhcCCCeEEEEcCCccCCCcchhhcCc-hhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHh-h
Confidence            8666654 44 36788988755333321 1111111      111112221000  11 11       2456665542 1


Q ss_pred             cccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------hhcccCCeE--EEecccccCc
Q psy5413         199 NIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------EVCASVDTV--MFCLSKGLGA  270 (285)
Q Consensus       199 ~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~~~~dv~--~~s~sK~l~~  270 (285)
                      ..+++++++|++|++++..|....|.+++++++++|++||+++|+||+++++.      ...++.++.  +.+++|++++
T Consensus       779 ~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~gK~lgg  858 (1013)
T PRK06148        779 AAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGN  858 (1013)
T ss_pred             hccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeecccccC
Confidence            11345799999999999886677889999999999999999999999988442      233445655  7788899987


Q ss_pred             --ceeEEeecCcccc
Q psy5413         271 --PVGSILAGPEEFI  283 (285)
Q Consensus       271 --p~gg~~~~~~~~i  283 (285)
                        |+|+++.+ ++++
T Consensus       859 G~Plgav~~~-~ei~  872 (1013)
T PRK06148        859 GHPMGAVVTT-REIA  872 (1013)
T ss_pred             CcceEEEEEc-HHHH
Confidence              88887765 5554

>PRK03321 putative aminotransferase; Provisional

Probab=99.82  E-value=1.2e-19  Score=162.62  Aligned_cols=198  Identities=21%  Similarity=0.156  Sum_probs=144.6

Q ss_pred             eeeeeccCCcCC-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCCe
Q psy5413          67 RTVDIRSDTISK-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDSE  143 (285)
Q Consensus        67 ~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~~  143 (285)
                      .+++|..+.+.. +.+.+.+++.+.......|. .+...++++.++++++.+  .+++++++++++..++.+++ ++|++
T Consensus        23 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~-~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~-~~gd~  100 (352)
T PRK03321         23 GAIKLSSNETPFGPLPSVRAAIARAAAGVNRYP-DMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATA-GPGDE  100 (352)
T ss_pred             cceeccCCCCCCCCCHHHHHHHHHHHHhcCcCC-CCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhc-CCCCE
Confidence            468888776655 67799999887654434454 567899999999999865  35677666777777777766 68999


Q ss_pred             EEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCC
Q psy5413         144 IIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLP  223 (285)
Q Consensus       144 vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~  223 (285)
                      |+++.+.+.....   ..      ...|.+++.++.++++.+|++++++++++       ++++|++++|+||+ |.++|
T Consensus       101 Vli~~p~y~~~~~---~~------~~~g~~~~~v~~~~~~~~~~~~l~~~~~~-------~~~~v~l~~p~NPt-G~~~~  163 (352)
T PRK03321        101 VIFAWRSFEAYPI---LV------QVAGATPVQVPLTPDHTHDLDAMAAAITD-------RTRLIFVCNPNNPT-GTVVT  163 (352)
T ss_pred             EEeCCCCHHHHHH---HH------HHcCCEEEEccCCCCCCCCHHHHHHhhcc-------CCCEEEEeCCCCCc-CCCcC
Confidence            9988765432211   12      34588888888765677899999999976       78999999999999 99999


Q ss_pred             HHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcccCCeE-EEecccccCc--ceeEEeecCccccc
Q psy5413         224 MQWLRELKARCQEHNIPVHMDGARLPLA----------EVCASVDTV-MFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       224 ~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~~~dv~-~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      .+++.++++.| ++|+++|+||+|..+.          .....-+++ +.|+||.++.  .+.|++++++++++
T Consensus       164 ~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~  236 (352)
T PRK03321        164 PAELARFLDAV-PADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHPEVIA  236 (352)
T ss_pred             HHHHHHHHHhC-CCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCHHHHH
Confidence            66666666544 3699999999976211          111222444 8899999874  56788888887764

>PRK05968 hypothetical protein; Provisional

Probab=99.82  E-value=2.6e-19  Score=162.28  Aligned_cols=162  Identities=20%  Similarity=0.246  Sum_probs=128.1

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|...+||+.+++++|.+.++++++|+.|+..++.+++ ++||+|+++...|..+.... ...      ...|.+++.+
T Consensus        61 ~~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~al~al~-~~Gd~Vl~~~~~y~~t~~~~~~~~------~~~G~~v~~v  133 (389)
T PRK05968         61 DNPTVRAFEEMLAKLEGAEDARGFASGMAAISSTVLSFV-EPGDRIVAVRHVYPDAFRLFETIL------KRMGVEVDYV  133 (389)
T ss_pred             CChhHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHH------HHcCceEEEe
Confidence            567799999999999999988888999999999998876 69999998877665432111 111      2357777776


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~  254 (285)
                      +..     |++++++++ +       ++++|++|+|+|++ +.+.+   +++|+++|++||+++|+|+++...   ....
T Consensus       134 d~~-----d~~~l~~~i-~-------~tklV~ie~pt~~~-~~~~d---l~~i~~la~~~gi~vivD~a~a~~~~~~p~~  196 (389)
T PRK05968        134 DGR-----DEEAVAKAL-P-------GAKLLYLESPTSWV-FELQD---VAALAALAKRHGVVTMIDNSWASPVFQRPIT  196 (389)
T ss_pred             CCC-----CHHHHHHhc-c-------cCCEEEEECCCCCC-CcHHH---HHHHHHHHHHcCCEEEEECCCcchhccCchh
Confidence            542     889999888 4       67999999998776 55555   999999999999999999998732   2334


Q ss_pred             ccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413         255 ASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ  284 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~  284 (285)
                      .++|+++.|++|++++   ++||++++++++++
T Consensus       197 ~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~  229 (389)
T PRK05968        197 LGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIA  229 (389)
T ss_pred             cCCcEEEeeccccccCCCCeEEEEEEECHHHHH
Confidence            5789999999999998   46899988877654

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.82  E-value=2.6e-19  Score=161.86  Aligned_cols=162  Identities=16%  Similarity=0.155  Sum_probs=126.9

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeec-ccccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWE-QGGASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~-~~~~~~~~~~~~~~g~~~~~~  177 (285)
                      ++|...+|++.++++.|.+.+++++||++|+..++.+++ ++||+|+++++.|..+.. ...+.      ...+.++..+
T Consensus        50 ~~pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l~-~~GD~Vl~~~~~y~~~~~~~~~~~------~~~gi~v~~v  122 (386)
T PRK08045         50 GNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFL-KPGDLLVAPHDCYGGSYRLFDSLA------KRGCYRVLFV  122 (386)
T ss_pred             CCccHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHc-CCCCEEEEcCCCcHHHHHHHHHHH------hhCCeEEEEe
Confidence            577899999999999998888999999999999998877 699999998877653322 11111      1234454444


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~  254 (285)
                      +     ..|++++++++++       ++++|++++|+||+ |.+.|   +++|.++|+++|+++|+|++|...   ..+.
T Consensus       123 d-----~~d~e~l~~~l~~-------~tklV~l~sP~NPt-G~v~d---i~~I~~ia~~~g~~vivDeay~~~~~~~pl~  186 (386)
T PRK08045        123 D-----QGDEQALRAALAE-------KPKLVLVESPSNPL-LRVVD---IAKICHLAREAGAVSVVDNTFLSPALQNPLA  186 (386)
T ss_pred             C-----CCCHHHHHHhccc-------CCeEEEEECCCCCC-CEecC---HHHHHHHHHHcCCEEEEECCCCccccCCchh
Confidence            3     2489999999977       78999999999999 89999   899999999999999999998832   2344


Q ss_pred             ccCCeEEEecccccCcc---eeEEeec-Ccccc
Q psy5413         255 ASVDTVMFCLSKGLGAP---VGSILAG-PEEFI  283 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~p---~gg~~~~-~~~~i  283 (285)
                      .++|+++.|++|+++|+   ++|+++. +++++
T Consensus       187 ~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~  219 (386)
T PRK08045        187 LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVV  219 (386)
T ss_pred             hCCCEEEeecceeccCCCCceeEEEEeCcHHHH
Confidence            57899999999999873   4566644 55543

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.82  E-value=1e-18  Score=159.63  Aligned_cols=192  Identities=17%  Similarity=0.125  Sum_probs=139.3

Q ss_pred             eeeccCCcCCCcHHHHHHHHhcccC--------CCCccCChhHHHHHH----HHHhHcCCCcEE-EcCChHHHHHHHHHH
Q psy5413          69 VDIRSDTISKPTMEMKNYMFNCEVG--------DDVYLEDPTCKELQE----KAAKLAGKEAAI-FVPSGTMGNLIAIMT  135 (285)
Q Consensus        69 ~~~~~~~~~~~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~~----~la~~~g~~~~~-~~~~Gs~a~~~al~~  135 (285)
                      -.+.++|+.  +|++++++.....+        ...|..++...+|++    .+++++|.+.++ +++||+.|+..++.+
T Consensus        32 ~l~~sen~~--~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~~~l~a  109 (416)
T PRK13034         32 ELIASENFT--SPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVYLA  109 (416)
T ss_pred             eecccccCC--CHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHHHHHHH
Confidence            345666664  99999998877421        123334678999999    999999999984 579999999999999


Q ss_pred             ccccCCCeEEecCCcceeeecccccccccccccccceee--eeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         136 HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLM--RGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       136 ~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      ++ ++||+|+++...|......+...      ...+..+  ..+..+ ..+.+|++++++.++..      ++++|+++.
T Consensus       110 l~-~~GD~Vl~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~------~~klVi~~~  176 (416)
T PRK13034        110 LL-KPGDTILGMSLSHGGHLTHGAKV------SLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEH------KPKLIIAGF  176 (416)
T ss_pred             hc-CCCCEEEEcCccceeeeecCCcc------eeccceeeeEEcccccccCCcCHHHHHHHHhhc------CCeEEEECC
Confidence            87 69999999988887643322221      0112111  233322 24558999999998652      568888865


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecCcc
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGPEE  281 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~  281 (285)
                      +.+   |...|   +++|.++|++||+++|+|++|+ +..      ....++|++++|++|++++|.||+++++++
T Consensus       177 ~~~---g~~~d---l~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~GG~v~~~~~  246 (416)
T PRK13034        177 SAY---PRELD---FARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRGGMILTNDE  246 (416)
T ss_pred             Ccc---ccccC---HHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCCCeEEEECcH
Confidence            432   77778   9999999999999999999987 211      112468999999999998888998877654

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.81  E-value=2.5e-19  Score=161.57  Aligned_cols=196  Identities=15%  Similarity=0.043  Sum_probs=141.8

Q ss_pred             eeeeccCC-cCCCcHHHHHHHHhcccC----CCCccCChhHHHHHHHHHhHc----CC----CcEEEcCChHHHHHHHHH
Q psy5413          68 TVDIRSDT-ISKPTMEMKNYMFNCEVG----DDVYLEDPTCKELQEKAAKLA----GK----EAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        68 ~~~~~~~~-~~~~~~~v~~a~~~~~~~----~~~y~~~~~~~~l~~~la~~~----g~----~~~~~~~~Gs~a~~~al~  134 (285)
                      .++|..+. +..+++.+.+++.+.+..    ...|. ++...+|++.+++++    |.    +.+++++|+++++..++.
T Consensus        28 ~i~l~~~~~~~~~~~~~~~al~~~l~~~~~~~~~Y~-~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~  106 (368)
T PRK03317         28 PVRLNTNENPYPPSPALVADIAEAVAEAAAGLNRYP-DRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQ  106 (368)
T ss_pred             eeEecCCCCCCCCCHHHHHHHHHHHhhhhhhhccCC-CCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHH
Confidence            47777554 445778999998876431    23554 456788999999998    32    345788888999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      +++ ++||.|++..++|.....   ..      ...|.+++.++..+++.+|++++++++++.      ++++|++++|+
T Consensus       107 ~~~-~~gd~v~v~~P~y~~~~~---~~------~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~~i~l~~p~  170 (368)
T PRK03317        107 AFG-GPGRTALGFVPSYSMHPI---IA------RGTHTEWVEGPRAADFTLDVDAAVAAIAEH------RPDVVFLTSPN  170 (368)
T ss_pred             Hhc-CCCCEEEEeCCChHHHHH---HH------HhcCCeeEEcccCCCCCCCHHHHHHHHhcc------CCCEEEEeCCC
Confidence            887 689999988887654332   22      344778888876556778999999999752      67889999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh--------hhcc-cCCeE-EEecccccCc--ceeEEeecCccc
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA--------EVCA-SVDTV-MFCLSKGLGA--PVGSILAGPEEF  282 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~--------~~~~-~~dv~-~~s~sK~l~~--p~gg~~~~~~~~  282 (285)
                      ||| |.+++.+++++|++   .+++++|+||+|..+.        .... .-+++ +.|+||.++.  .+.|++++++++
T Consensus       171 NPt-G~~~~~~~l~~l~~---~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~~  246 (368)
T PRK03317        171 NPT-GTALPLDDVEAILD---AAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAPAV  246 (368)
T ss_pred             CCC-CCCCCHHHHHHHHH---HCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCHHH
Confidence            999 99999555555555   4589999999987321        1111 22444 8899998863  556788888776


Q ss_pred             cc
Q psy5413         283 IQ  284 (285)
Q Consensus       283 i~  284 (285)
                      ++
T Consensus       247 ~~  248 (368)
T PRK03317        247 VD  248 (368)
T ss_pred             HH
Confidence            54

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.81  E-value=7.2e-19  Score=161.34  Aligned_cols=241  Identities=13%  Similarity=0.093  Sum_probs=157.4

Q ss_pred             hhhhcccCCCCCccc--ccccccccccc-CCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHH--HHHHhc
Q psy5413          16 KIAREVLTLPTPALV--ESTPLSRSWSD-NGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMK--NYMFNC   90 (285)
Q Consensus        16 ~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~a~~~~   90 (285)
                      ...+++.+...|..+  .++.+.+.|+. .++.+++.+..|+..                  +.++.||+|.  +|+.++
T Consensus         7 ~~~~~~~~~~~p~~~~~~~a~G~~l~D~~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~~~ai~~q   68 (431)
T TIGR03251         7 VLSRHMLTDGFDLVLDLDRSRGSVLVDARDGRRYLDMFSFFASM------------------ALGMNHPALVDDLAFRAR   68 (431)
T ss_pred             HHHHHhhccCCceeeEEEeccCCEEEECCCCCChhhcccChhhc------------------CCCCCChhhhHHHHHHHH
Confidence            344666666556664  78999999995 888887777776653                  2378999999  898877


Q ss_pred             ccCCC----C--ccCChhHHHHHHHHHhHc---CCCcEEEcCChHHHHHHHHHHccccC-------C------CeEEe-c
Q psy5413          91 EVGDD----V--YLEDPTCKELQEKAAKLA---GKEAAIFVPSGTMGNLIAIMTHCDRR-------D------SEIIV-G  147 (285)
Q Consensus        91 ~~~~~----~--y~~~~~~~~l~~~la~~~---g~~~~~~~~~Gs~a~~~al~~~~~~~-------g------~~vi~-~  147 (285)
                      +....    .  ....+...++.++|+++.   +.+.++|++|||+|++.|++++....       |      .+|+. .
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~  148 (431)
T TIGR03251        69 LGAAAVNKPSNSDVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLR  148 (431)
T ss_pred             HHHhhhcccccCCCCCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEEC
Confidence            65311    1  123455677777777774   34678999999999999999986321       2      34544 5


Q ss_pred             CCcceeeecccccccccccccccceee----eeee-----cCCCC--------CCCHHHHHHHhcccccccCCceEEEEE
Q psy5413         148 DCSHIMLWEQGGASQTSVYSQIGRVLM----RGVT-----NQKDG--------TFDLDEMEAKFSTADNIHCASTSLVCV  210 (285)
Q Consensus       148 ~~~h~~~~~~~~~~~~~~~~~~~g~~~----~~~~-----~~~~~--------~~d~~~l~~~i~~~~~~~~~~~~~v~i  210 (285)
                      ..||+.+.....+.....+...+...+    +..|     .....        ..+++++++.+..    +.+++++|++
T Consensus       149 ~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~iAaviv  224 (431)
T TIGR03251       149 QAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAE----RPHDIACFIA  224 (431)
T ss_pred             CccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHh----CCCcEEEEEE
Confidence            788988765443321111111111100    0111     10000        0235556666654    3458999999


Q ss_pred             ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCcceeEEeecCc
Q psy5413         211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGAPVGSILAGPE  280 (285)
Q Consensus       211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~p~gg~~~~~~  280 (285)
                      |++++.+|....|++++++|+++|++||+++|+||+++++     ....+..++.  +.+++|.+  |.+|++++++
T Consensus       225 EPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~gK~~--~~~g~~~~~~  299 (431)
T TIGR03251       225 EPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFGKKT--QVCGIMAGRR  299 (431)
T ss_pred             eccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEEecccC--ccceEEecch
Confidence            9999988666678999999999999999999999998833     2223333433  45678986  5677777754

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.81  E-value=5.3e-19  Score=158.42  Aligned_cols=196  Identities=17%  Similarity=0.161  Sum_probs=144.5

Q ss_pred             eeeeccCCcCC-CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCC
Q psy5413          68 TVDIRSDTISK-PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDS  142 (285)
Q Consensus        68 ~~~~~~~~~~~-~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~  142 (285)
                      .++|..+.+.. +++.+.+++.+....  ...|. ++...++++.++++++.+  .+++++|+++++..++.+++ ++||
T Consensus        24 ~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~~~y~-~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~-~~gd  101 (351)
T PRK14807         24 KYKMDANETPFELPEEVIKNIQEIVKSSQVNIYP-DPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFI-NKGD  101 (351)
T ss_pred             eeEccCCCCCCCCCHHHHHHHHHHhhcCcccCCC-CccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhc-CCCC
Confidence            46777665554 567999998775542  23454 345789999999999864  46788888888999888876 6899


Q ss_pred             eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413         143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL  222 (285)
Q Consensus       143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~  222 (285)
                      +|+++++++.....   ..      ...|.+++.++.++++.+|++++++++++.      ++++|++++|+||| |.++
T Consensus       102 ~Vlv~~p~y~~~~~---~~------~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~------~~k~v~l~~p~NPt-G~~~  165 (351)
T PRK14807        102 VVIYPHPSFAMYSV---YS------KIAGAVEIPVKLKEDYTYDVGSFIKVIEKY------QPKLVFLCNPNNPT-GSVI  165 (351)
T ss_pred             EEEEeCCChHHHHH---HH------HHcCCeEEEeecCCCCCCCHHHHHHHhhcc------CCCEEEEeCCCCCC-CCCC
Confidence            99998877643222   22      345888899888666779999999999642      68999999999999 9999


Q ss_pred             CHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcc-cCC-eEEEecccccCc--ceeEEeecCccccc
Q psy5413         223 PMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCA-SVD-TVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       223 ~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~-~~d-v~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      +   .+++.++|++++.++|+||+|..+.     .... ... +++.|+||.++.  .+.|++++++++++
T Consensus       166 ~---~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~  233 (351)
T PRK14807        166 E---REDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILK  233 (351)
T ss_pred             C---HHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhcccchhceeeeecCHHHHH
Confidence            9   5556666667788999999986221     1112 222 448999999863  67789988887654

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.81  E-value=6.2e-19  Score=159.56  Aligned_cols=192  Identities=20%  Similarity=0.238  Sum_probs=139.5

Q ss_pred             eccCCcCCCcHHHHHHHHhcccC---CC--Ccc----CChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccc-
Q psy5413          71 IRSDTISKPTMEMKNYMFNCEVG---DD--VYL----EDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCD-  138 (285)
Q Consensus        71 ~~~~~~~~~~~~v~~a~~~~~~~---~~--~y~----~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~-  138 (285)
                      |.+...+..++++++++.+....   ..  .+.    ......++++.+++++|.+.  ++|++||++++..++.++.. 
T Consensus         3 ld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~   82 (379)
T TIGR03402         3 LDNNATTRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAA   82 (379)
T ss_pred             CCCcCCCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHh
Confidence            33444455678999998765431   11  111    12346788899999999754  68999999999999987642 


Q ss_pred             -cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCC
Q psy5413         139 -RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYC  217 (285)
Q Consensus       139 -~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~  217 (285)
                       .+++.|++....|.+........      ...|.+++.++.++++.+|++++++++++       ++++|++++++|++
T Consensus        83 ~~~~~~vv~~~~~~~s~~~~~~~~------~~~G~~v~~v~~~~~g~~~~~~l~~~i~~-------~~~lv~i~~~~n~t  149 (379)
T TIGR03402        83 QPEKRHIITTAVEHPAVLSLCQHL------EKQGYKVTYLPVDEEGRLDLEELRAAITD-------DTALVSVMWANNET  149 (379)
T ss_pred             cCCCCeEEEcccccHHHHHHHHHH------HHcCCEEEEEccCCCCcCCHHHHHHhcCC-------CcEEEEEEcccCCe
Confidence             34577888777775432211111      23588888888767778999999999987       78999999999999


Q ss_pred             CeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCcce-eEEeecCc
Q psy5413         218 GGTVLPMQWLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPV-GSILAGPE  280 (285)
Q Consensus       218 gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~-gg~~~~~~  280 (285)
                       |.++|   +++|+++|++||+++|+|++|+ +   +.....++|++++|.+|. .+|. .|++..++
T Consensus       150 -G~~~~---~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~-~gp~G~g~l~v~~  212 (379)
T TIGR03402       150 -GTIFP---IEEIGEIAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKL-HGPKGVGALYIRK  212 (379)
T ss_pred             -eeccc---HHHHHHHHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHHc-CCCCceEEEEECC
Confidence             99999   8999999999999999999988 2   222235789999999994 5544 34554443

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.81  E-value=5.8e-19  Score=160.99  Aligned_cols=202  Identities=14%  Similarity=0.069  Sum_probs=146.1

Q ss_pred             CCeeeeeccCCcCCC-cHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----CC----CcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISKP-TMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----GK----EAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g~----~~~~~~~~Gs~a~~~al~  134 (285)
                      +..+++|..+.+..+ ++.+.+++.+.... ...|....+..++++.+++++    |.    +.+++++|+++|+..++.
T Consensus        32 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~  111 (402)
T PRK06107         32 GRSIVDLTVGEPDFDTPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALM  111 (402)
T ss_pred             cCCEEEcCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHH
Confidence            456788888777764 56888887776542 345665555667777776653    43    336888888999999998


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      +++ .+|+.|++++++|.......         ...+...+.++.+  .++.+|++++++.+.+       ++++|++++
T Consensus       112 ~~~-~~gd~vl~~~p~y~~y~~~~---------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~-------~~~~v~l~~  174 (402)
T PRK06107        112 ATL-EAGDEVIIPAPYWVSYPDMV---------LANDGTPVIVACPEEQGFKLTPEALEAAITP-------RTRWLILNA  174 (402)
T ss_pred             Hhc-CCCCEEEEecCCCcCHHHHH---------HHcCCEEEEecCCcccCCCCCHHHHHhhcCc-------CceEEEEEC
Confidence            876 58999999888654332211         1224455555553  2356899999999876       789999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHc-CCeEEEeCccCCh----------hhhccc--CCeE-EEecccccCc--ceeEEe
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEH-NIPVHMDGARLPL----------AEVCAS--VDTV-MFCLSKGLGA--PVGSIL  276 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~-gi~li~Dea~~~~----------~~~~~~--~dv~-~~s~sK~l~~--p~gg~~  276 (285)
                      |+||| |.+++.+++++|+++|++| |+++|+||+|..+          ..+..+  ..++ +.|+||.++.  .+.|++
T Consensus       175 p~NPt-G~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~  253 (402)
T PRK06107        175 PSNPT-GAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYA  253 (402)
T ss_pred             CCCCC-CcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeee
Confidence            99999 9999999999999999998 9999999998621          111111  1344 8999999864  677888


Q ss_pred             ecCccccc
Q psy5413         277 AGPEEFIQ  284 (285)
Q Consensus       277 ~~~~~~i~  284 (285)
                      ++++++++
T Consensus       254 ~~~~~~~~  261 (402)
T PRK06107        254 AGPADLIA  261 (402)
T ss_pred             ecCHHHHH
Confidence            88887764

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.81  E-value=6e-19  Score=152.46  Aligned_cols=198  Identities=17%  Similarity=0.153  Sum_probs=137.8

Q ss_pred             eeeeccCCcCC-CcHHHHHHHHhcccC-CCCcc--CChhHHHHHHHHHhHcC----CCcEEEcCChHHHHHHHHHHcccc
Q psy5413          68 TVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYL--EDPTCKELQEKAAKLAG----KEAAIFVPSGTMGNLIAIMTHCDR  139 (285)
Q Consensus        68 ~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~--~~~~~~~l~~~la~~~g----~~~~~~~~~Gs~a~~~al~~~~~~  139 (285)
                      ++.+--..+.. ..|+|++|+++.... ..+|.  ++.....+....++..+    .+..+|+.+..-++..+++++. +
T Consensus        27 vlPmWVADMDf~~pp~i~~Al~~rvdhGvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T-~  105 (388)
T COG1168          27 VLPMWVADMDFPTPPEIIEALRERVDHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALT-K  105 (388)
T ss_pred             cceeeeecccCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhC-c
Confidence            33333333344 577999999887652 23333  33334444444444443    2345889999999999999976 7


Q ss_pred             CCCeEEecCCcceeeecccccccccccccccceeeeeeecC-CC--CCCCHHHHHHHhcccccccCCceEEEEEecccCC
Q psy5413         140 RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-KD--GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNY  216 (285)
Q Consensus       140 ~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~  216 (285)
                      +||.|++..+.|........         ..|.+++..|.. ++  +.+|+++||+++.+.      +++++++|+|+||
T Consensus       106 ~gd~Vvi~tPvY~PF~~~i~---------~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~------~vkl~iLCnPHNP  170 (388)
T COG1168         106 PGDGVVIQTPVYPPFYNAIK---------LNGRKVIENPLVEDDGRYEIDFDALEKAFVDE------RVKLFILCNPHNP  170 (388)
T ss_pred             CCCeeEecCCCchHHHHHHh---------hcCcEEEeccccccCCcEEecHHHHHHHHhcC------CccEEEEeCCCCC
Confidence            99999998776654444222         337788877754 23  457999999999762      6799999999999


Q ss_pred             CCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhc-ccCC--eEEEecccccCc--ceeE-EeecCc
Q psy5413         217 CGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVC-ASVD--TVMFCLSKGLGA--PVGS-ILAGPE  280 (285)
Q Consensus       217 ~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~-~~~d--v~~~s~sK~l~~--p~gg-~~~~~~  280 (285)
                      + |.+++.++|.+|.++|++||+.||.||+|..+          ..+. ..+|  +.+.+.||++..  ...+ +++.++
T Consensus       171 ~-Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~  249 (388)
T COG1168         171 T-GRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNR  249 (388)
T ss_pred             C-CccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCH
Confidence            9 99999999999999999999999999998821          1122 1234  448889998654  4444 445555


Q ss_pred             cc
Q psy5413         281 EF  282 (285)
Q Consensus       281 ~~  282 (285)
                      ++
T Consensus       250 ~l  251 (388)
T COG1168         250 EL  251 (388)
T ss_pred             HH
Confidence            43

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.81  E-value=3e-19  Score=161.10  Aligned_cols=197  Identities=14%  Similarity=0.029  Sum_probs=145.3

Q ss_pred             eeeeccCCcCC-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCCeE
Q psy5413          68 TVDIRSDTISK-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDSEI  144 (285)
Q Consensus        68 ~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~~v  144 (285)
                      +++|..+.+.. +++.+.+++.+.......|+.. ...+|++.++++++.+  .+++++|+++++..++.+++ ++||.|
T Consensus        34 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~-~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~-~~gd~v  111 (369)
T PRK08153         34 RARIGANESGFGPSPSVIAAMREAAAEIWKYGDP-ENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYV-EPGDPV  111 (369)
T ss_pred             eeEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCC-ccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc-CCCCEE
Confidence            35888665554 6779999987765333456533 4789999999999864  46788888888888888877 589999


Q ss_pred             EecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCH
Q psy5413         145 IVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPM  224 (285)
Q Consensus       145 i~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~  224 (285)
                      ++++++|......   .      ...|.+++.+|...+ ..|++++++.+...      ++++|++++|+||| |.+++.
T Consensus       112 lv~~p~y~~~~~~---~------~~~g~~~~~vp~~~~-~~~~~~l~~~~~~~------~~~~i~l~~P~NPt-G~~~~~  174 (369)
T PRK08153        112 VTSLGAYPTFNYH---V------AGFGGRLVTVPYRDD-REDLDALLDAARRE------NAPLVYLANPDNPM-GSWHPA  174 (369)
T ss_pred             EECCCcchHHHHH---H------HHcCCeEEEeeCCCC-CCCHHHHHHHhccc------CCcEEEEeCCCCCC-CCCCCH
Confidence            9988876543221   1      234788888887444 47899988776532      68999999999999 999999


Q ss_pred             HHHHHHHHHHHHcCCeEEEeCccCChh------hhcc-cCC-eEEEecccccCc--ceeEEeecCccccc
Q psy5413         225 QWLRELKARCQEHNIPVHMDGARLPLA------EVCA-SVD-TVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       225 ~~l~~i~~la~~~gi~li~Dea~~~~~------~~~~-~~d-v~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      +++++++++|+ +|++||+||+|..+.      .+.. .-+ +++.||||.++.  .+.|++++++++++
T Consensus       175 ~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~  243 (369)
T PRK08153        175 ADIVAFIEALP-ETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIK  243 (369)
T ss_pred             HHHHHHHHhCC-CCcEEEEeCchhhhcCcccchhhhhcCCCEEEEecchHhccCcchheeeeecCHHHHH
Confidence            99999999887 599999999987221      1111 223 449999999873  66788888877654

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.81  E-value=2.3e-19  Score=163.50  Aligned_cols=196  Identities=16%  Similarity=0.086  Sum_probs=145.6

Q ss_pred             CCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc---EEEcCChHHHHHHHHHHccccCCCeEEecCCc
Q psy5413          74 DTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA---AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCS  150 (285)
Q Consensus        74 ~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~---~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~  150 (285)
                      -.|...+++|++++.+....+..........++++.+++++|.+.   .+++++|+++++.++..++ ++||+|++.+..
T Consensus        15 pGP~~~~~~V~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~-~~Gd~Vlv~~~~   93 (401)
T PLN02409         15 PGPVNIPERVLRAMNRPNEDHRSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTL-SPGDKVVSFRIG   93 (401)
T ss_pred             CCCCCCCHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcC-CCCCEEEEeCCC
Confidence            334557889999997765444322234557788888889988753   4899999999999998876 699999988766


Q ss_pred             ceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHH
Q psy5413         151 HIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLREL  230 (285)
Q Consensus       151 h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i  230 (285)
                      |.... +....      +..|.+++.++.+++...|+++++++++++.   ..++++|+++++.|+| |.++|   +++|
T Consensus        94 ~~~~~-~~~~~------~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~---~~~~k~v~~~~~~~~t-G~~~~---~~~i  159 (401)
T PLN02409         94 QFSLL-WIDQM------QRLNFDVDVVESPWGQGADLDILKSKLRQDT---NHKIKAVCVVHNETST-GVTND---LAGV  159 (401)
T ss_pred             chhHH-HHHHH------HHcCCceEEEECCCCCCCCHHHHHHHHhhCc---CCCccEEEEEeecccc-cccCC---HHHH
Confidence            54321 11222      3458888888876555689999999997510   0268999999999999 99999   6777


Q ss_pred             HHH--HHHcCCeEEEeCccC-Chhh---hcccCCeEEEecccccCc-ceeEEeecCccccc
Q psy5413         231 KAR--CQEHNIPVHMDGARL-PLAE---VCASVDTVMFCLSKGLGA-PVGSILAGPEEFIQ  284 (285)
Q Consensus       231 ~~l--a~~~gi~li~Dea~~-~~~~---~~~~~dv~~~s~sK~l~~-p~gg~~~~~~~~i~  284 (285)
                      .++  |+++|+++++|++++ +...   ...++|+++.+.+|||++ +..|+++.++++++
T Consensus       160 ~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~  220 (401)
T PLN02409        160 RKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALE  220 (401)
T ss_pred             HHHHhhhccCcEEEEEcccccCCccccccccCccEEEEcCccccCcCCCcceeEECHHHHH
Confidence            777  999999999999988 2222   235789999999999988 44677777766543

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.81  E-value=3e-19  Score=161.13  Aligned_cols=161  Identities=19%  Similarity=0.190  Sum_probs=127.3

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|...+|++.++++.|.+..+++++|+.++..++. ++ ++||+|+++++.|..++... ...      ...|++++.+
T Consensus        48 ~~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~~-~l-~~Gd~Viv~~~~y~~~~~~~~~~~------~~~G~~v~~v  119 (377)
T PRK07671         48 GNPTRAALEELIAVLEGGHAGFAFGSGMAAITAVMM-LF-SSGDHVILTDDVYGGTYRVMTKVL------NRFGIEHTFV  119 (377)
T ss_pred             CChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHH-Hh-CCCCEEEECCCccchHHHHHHHHH------hcCCeEEEEE
Confidence            578899999999999999999999999998877664 45 68999999888765433211 111      2357787777


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~  254 (285)
                      +.     .|+++++++|++       ++++|++++|+||+ |.+.+   +++|+++|+++|+++++|+++...   ....
T Consensus       120 ~~-----~d~~~l~~ai~~-------~tklV~le~P~NPt-g~~~d---l~~I~~la~~~g~~lvvD~a~~~~~~~~p~~  183 (377)
T PRK07671        120 DT-----SNLEEVEEAIRP-------NTKAIYVETPTNPL-LKITD---IKKISTIAKEKGLLTIVDNTFMTPYWQSPIS  183 (377)
T ss_pred             CC-----CCHHHHHHhcCC-------CCeEEEEECCCCCC-CcccC---HHHHHHHHHHcCCEEEEECCCCccccCChhh
Confidence            64     389999999987       79999999999999 89998   999999999999999999998721   2234


Q ss_pred             ccCCeEEEecccccCcc---eeEEeec-Ccccc
Q psy5413         255 ASVDTVMFCLSKGLGAP---VGSILAG-PEEFI  283 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~p---~gg~~~~-~~~~i  283 (285)
                      .++|+++.|++|+++++   .+|+++. +++++
T Consensus       184 ~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~  216 (377)
T PRK07671        184 LGADIVLHSATKYLGGHSDVVAGLVVVNSPELA  216 (377)
T ss_pred             hCCeEEEecCcccccCCccceeEEEEeCcHHHH
Confidence            57899999999999984   5665554 55554

>KOG1402|consensus

Probab=99.81  E-value=2.4e-19  Score=151.46  Aligned_cols=205  Identities=18%  Similarity=0.204  Sum_probs=143.0

Q ss_pred             CCeeeeecc----CCcCCCcHHHHHHHHhcccC----CCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHc
Q psy5413          65 NIRTVDIRS----DTISKPTMEMKNYMFNCEVG----DDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        65 ~~~~~~~~~----~~~~~~~~~v~~a~~~~~~~----~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~  136 (285)
                      |++++||-+    -|-+++||.+.+++++|...    ...|. +..+.++++.+.+++|.+.++-+++|.+|++.|++++
T Consensus        58 Gk~ylDflsaysaVnqGhchpki~~aLqeq~~kLtlssrafY-nd~~~~f~~~vt~lf~~~kvlpmnTGaEa~Eta~KLa  136 (427)
T KOG1402|consen   58 GKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLTLSSRAFY-NDVLGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLA  136 (427)
T ss_pred             ccchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhhhhhHHHh-hhhHHHHHHHHHHhcCcceeeecccchhHHHHHHHHH
Confidence            555566543    24467999999999988763    22333 3458899999999999999999999999999999998


Q ss_pred             cccCC---------CeEEe--cCCcceeeeccccccccc-ccccccceeeee-eecCCCCCCCHHHHHHHhcccccccCC
Q psy5413         137 CDRRD---------SEIIV--GDCSHIMLWEQGGASQTS-VYSQIGRVLMRG-VTNQKDGTFDLDEMEAKFSTADNIHCA  203 (285)
Q Consensus       137 ~~~~g---------~~vi~--~~~~h~~~~~~~~~~~~~-~~~~~~g~~~~~-~~~~~~~~~d~~~l~~~i~~~~~~~~~  203 (285)
                      . ++|         +.+|+  .+..|+-+..+..++.++ -|. .+|.-+-. +..-+.+  |.++|+.+++..      
T Consensus       137 R-~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~-~fgp~~P~~~~~v~Y~--d~eale~~l~~~------  206 (427)
T KOG1402|consen  137 R-KWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWD-GFGPFLPGVVDKVPYG--DAEALEVALKSP------  206 (427)
T ss_pred             H-HHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhh-ccCCCCCCcceeeccC--CHHHHHHHhcCC------
Confidence            6 332         22343  466676554322222221 221 22332221 1111233  899999999762      


Q ss_pred             ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCCeE--EEecccccCc---cee
Q psy5413         204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVDTV--MFCLSKGLGA---PVG  273 (285)
Q Consensus       204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~---p~g  273 (285)
                      +++++++|+.|+..|-.+.|+.+|++++++|++|++++|.||+|+++.     .++++..+.  +.-+.|.|+|   |..
T Consensus       207 ~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDivilgKalSGG~~Pvs  286 (427)
T KOG1402|consen  207 NVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIVILGKALSGGVYPVS  286 (427)
T ss_pred             CeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeEEEeccccCCeeeeE
Confidence            899999999999995556668999999999999999999999998543     223332222  4445599988   999


Q ss_pred             EEeecCc
Q psy5413         274 SILAGPE  280 (285)
Q Consensus       274 g~~~~~~  280 (285)
                      ++++.++
T Consensus       287 avl~~~~  293 (427)
T KOG1402|consen  287 AVLADDD  293 (427)
T ss_pred             EEEecHH
Confidence            9887754

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.81  E-value=2.4e-19  Score=166.07  Aligned_cols=199  Identities=13%  Similarity=0.045  Sum_probs=143.0

Q ss_pred             CeeeeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHH-hHc----C----CC---cEEEcCChHHHHHHHH
Q psy5413          66 IRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAA-KLA----G----KE---AAIFVPSGTMGNLIAI  133 (285)
Q Consensus        66 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la-~~~----g----~~---~~~~~~~Gs~a~~~al  133 (285)
                      +.++++..+.+..+.++++.++.+...+. .|.......++++.++ +++    +    .+   .+++++||++|+..++
T Consensus        94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~  172 (521)
T TIGR03801        94 RDIISYVIDQLGFDPDAFLYEMCDGIIGD-NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIF  172 (521)
T ss_pred             HHHHhhcCCCCCCCCCHHHHHHHHHhhcC-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHH
Confidence            45678888888888778778877765544 4653334444444444 332    1    11   4688899999999888


Q ss_pred             HH-----ccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--C-----CCCCHHHHHHHhccccccc
Q psy5413         134 MT-----HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--D-----GTFDLDEMEAKFSTADNIH  201 (285)
Q Consensus       134 ~~-----~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~-----~~~d~~~l~~~i~~~~~~~  201 (285)
                      .+     ++ .+||+|+++.+++........+.       ..+.+++.++.++  .     +.+|++++++++++     
T Consensus       173 ~~l~~~~ll-~pGD~Vlv~~P~y~~y~~~~~l~-------~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~-----  239 (521)
T TIGR03801       173 DSLKANELL-KKGDKIALMTPIFTPYLEIPELP-------RYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDP-----  239 (521)
T ss_pred             HHHhHhhcC-CCCCEEEEeCCCcHHHHHHHHHh-------cCCcEEEEeecccccccccccCCCCHHHHHHhcCC-----
Confidence            76     45 69999999988865443321121       2467777777532  1     67899999998876     


Q ss_pred             CCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc--CCeEEEeCccCChh----hhcc-cC-C-eEEEecccccCc--
Q psy5413         202 CASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH--NIPVHMDGARLPLA----EVCA-SV-D-TVMFCLSKGLGA--  270 (285)
Q Consensus       202 ~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~--gi~li~Dea~~~~~----~~~~-~~-d-v~~~s~sK~l~~--  270 (285)
                        ++++|++++|+||| |.+++.+++++|+++|++|  |++||+||+|..+.    .+.. .. . +++.|+||.+++  
T Consensus       240 --~~kai~l~nP~NPT-G~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~~G  316 (521)
T TIGR03801       240 --SIKALFVVNPSNPP-SVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFGATG  316 (521)
T ss_pred             --CCcEEEEeCCCCCC-CCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhccCch
Confidence              89999999999999 9999999999999999987  99999999987221    1111 11 2 448999998864  


Q ss_pred             ceeEEeecCcc
Q psy5413         271 PVGSILAGPEE  281 (285)
Q Consensus       271 p~gg~~~~~~~  281 (285)
                      .+.|+++.+++
T Consensus       317 ~RlG~i~~~~~  327 (521)
T TIGR03801       317 WRLGTIALHKD  327 (521)
T ss_pred             hhhhhhhcCch
Confidence            77788887654

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.81  E-value=3.7e-19  Score=160.73  Aligned_cols=162  Identities=16%  Similarity=0.143  Sum_probs=126.8

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecc-cccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|...+|++.++++.|.+.+++++||++|+..++.+++ ++||+|+++.+.|..+... ..+.      ...+.++..+
T Consensus        49 ~~p~~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~l~all-~~GD~Vl~~~p~y~~~~~~~~~~~------~~~~~~v~~~  121 (382)
T TIGR02080        49 GNPTRDLLQQALAELEGGAGAVVTNTGMSAIHLVTTALL-GPDDLLVAPHDCYGGTYRLLNALA------KKGCFRVLFV  121 (382)
T ss_pred             CCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHc-CCCCEEEEcCCCcHHHHHHHHHHH------hhcCeEEEEE
Confidence            578899999999999998889999999999999999887 6999999988777543221 1111      1224444443


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~  254 (285)
                      +.     .|++++++++++       ++++|++++|+||+ |.++|   +++|+++|+++|+++++|++|...   ..+.
T Consensus       122 d~-----~d~~~l~~ai~~-------~tklV~l~~p~NPt-G~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~~pl~  185 (382)
T TIGR02080       122 DQ-----GDEQALRAALAQ-------KPKLVLIETPSNPL-LRVVD---IAKICHLAKAVGAVVVVDNTFLSPALQNPLA  185 (382)
T ss_pred             CC-----CCHHHHHHhcCc-------CceEEEEECCCCCC-CEecC---HHHHHHHHHHcCCEEEEECCCcccccCCchh
Confidence            32     388999999987       78999999999999 89999   899999999999999999998722   1233


Q ss_pred             ccCCeEEEecccccCc---ceeEEeec-Ccccc
Q psy5413         255 ASVDTVMFCLSKGLGA---PVGSILAG-PEEFI  283 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~---p~gg~~~~-~~~~i  283 (285)
                      .++|+++.|++|+++|   .++|+++. +++++
T Consensus       186 ~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~  218 (382)
T TIGR02080       186 LGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVA  218 (382)
T ss_pred             hCCCEEEeecceeccCCCCceeEEEEeCCHHHH
Confidence            4789999999999987   35777654 55544

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.81  E-value=2.7e-19  Score=161.23  Aligned_cols=161  Identities=14%  Similarity=0.101  Sum_probs=131.6

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|....|++.++.+.+.+..+++.||++|+..++.+++ ++||+|+++++.|..+.... ...      ..+|.++..+
T Consensus        62 gnPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all-~~GD~Vlv~~~~Y~~~~~l~~~~l------~~~Gi~v~~v  134 (395)
T PRK05967         62 GTPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFL-SPGDHALIVDSVYYPTRHFCDTML------KRLGVEVEYY  134 (395)
T ss_pred             CChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhc-CCCCEEEEccCCcHHHHHHHHHHH------HhcCeEEEEe
Confidence            678899999999999988888999999999999998877 69999999887765543211 122      3557787776


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC---hhhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP---LAEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~---~~~~~  254 (285)
                      +..     +.+.+++++++       +|++|++++|+||+ +.+.|   |++|+++|+++|+++++|+++..   ...+.
T Consensus       135 d~~-----~~e~l~~al~~-------~TklV~lesPsNP~-l~v~d---l~~I~~la~~~g~~vvVD~t~a~p~~~~pl~  198 (395)
T PRK05967        135 DPE-----IGAGIAKLMRP-------NTKVVHTEAPGSNT-FEMQD---IPAIAEAAHRHGAIVMMDNTWATPLYFRPLD  198 (395)
T ss_pred             CCC-----CHHHHHHhcCc-------CceEEEEECCCCCC-CcHHH---HHHHHHHHHHhCCEEEEECCccCceecChhH
Confidence            532     45789999987       89999999999998 77777   99999999999999999999883   34455


Q ss_pred             ccCCeEEEecccccCc---ceeEEeecCccc
Q psy5413         255 ASVDTVMFCLSKGLGA---PVGSILAGPEEF  282 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~  282 (285)
                      .++|+++.|.+|+++|   -++|+++.++++
T Consensus       199 ~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~  229 (395)
T PRK05967        199 FGVDISIHAATKYPSGHSDILLGTVSANEKC  229 (395)
T ss_pred             cCCCEEEEecccccCCCCCeeEEEEEcCHHH
Confidence            7899999999999988   667777777654

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.81  E-value=3e-19  Score=163.80  Aligned_cols=214  Identities=19%  Similarity=0.175  Sum_probs=141.8

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCC-CCccCChhHHHHHHHHHhHc-CCCcEEEcCChHHHHHHHHHHccc
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD-DVYLEDPTCKELQEKAAKLA-GKEAAIFVPSGTMGNLIAIMTHCD  138 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~-~~y~~~~~~~~l~~~la~~~-g~~~~~~~~~Gs~a~~~al~~~~~  138 (285)
                      |++++||.++    +.++.+|++.+++.+++... ..+...+...+|.+.|++++ +.++++|++||++|++.|++++..
T Consensus        49 G~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~e~Aik~a~~  128 (426)
T PRK00062         49 GNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGLSFGAPTELEVELAELVIELVPSIEMVRMVNSGTEATMSAIRLARG  128 (426)
T ss_pred             CCEEEEcccchhhhhcCCCCHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHHhCCCCCEEEEecCHHHHHHHHHHHHHH
Confidence            6778888765    34579999999999887642 23345677889999999876 567789999999999999999875


Q ss_pred             cCC-CeEEe-cCCcceeeeccccccccc--ccccc-cceeeeeee--cCCCCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413         139 RRD-SEIIV-GDCSHIMLWEQGGASQTS--VYSQI-GRVLMRGVT--NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVE  211 (285)
Q Consensus       139 ~~g-~~vi~-~~~~h~~~~~~~~~~~~~--~~~~~-~g~~~~~~~--~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~  211 (285)
                      ..| ++|+. ...||+.+......+...  .+... .+.....++  .......|++++++.++.    +.+++++|++|
T Consensus       129 ~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~~aaiivE  204 (426)
T PRK00062        129 YTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEE----YGDEIAAVIVE  204 (426)
T ss_pred             HhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHh----CCCcEEEEEEe
Confidence            434 34444 577888763222221000  00000 000000000  000112388999998865    23479999999


Q ss_pred             cccCCCCeeeC-CHHHHHHHHHHHHHcCCeEEEeCccCChh----hhcccCCeE--EEecccccCc--ceeEEeecCccc
Q psy5413         212 NTHNYCGGTVL-PMQWLRELKARCQEHNIPVHMDGARLPLA----EVCASVDTV--MFCLSKGLGA--PVGSILAGPEEF  282 (285)
Q Consensus       212 ~~~n~~gG~~~-~~~~l~~i~~la~~~gi~li~Dea~~~~~----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~  282 (285)
                      ++++.+ |.+. +.+++++|+++|++||+++|+||+|+++.    ...+..++.  +.+++|.+++  |.|++ +.++++
T Consensus       205 pv~~~~-G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~~~~~~~~~~pDi~~~gK~l~~G~p~ga~-~~~~~i  282 (426)
T PRK00062        205 PVAGNM-GVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGGAQGYYGVTPDLTTLGKIIGGGLPVGAF-GGRREI  282 (426)
T ss_pred             CCcCCC-CCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCccHHHHhCCCcchHhhhhHhhCCCcceee-eEHHHH
Confidence            988887 6565 48999999999999999999999988541    122222322  4678899987  66665 555555


Q ss_pred             cc
Q psy5413         283 IQ  284 (285)
Q Consensus       283 i~  284 (285)
                      ++
T Consensus       283 ~~  284 (426)
T PRK00062        283 ME  284 (426)
T ss_pred             HH
Confidence            43

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.81  E-value=4.1e-19  Score=159.85  Aligned_cols=189  Identities=13%  Similarity=0.093  Sum_probs=140.2

Q ss_pred             CCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc----EEEcCChHHHHHHHHHHccccCCCeEEe-cCCcc
Q psy5413          77 SKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA----AIFVPSGTMGNLIAIMTHCDRRDSEIIV-GDCSH  151 (285)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~----~~~~~~Gs~a~~~al~~~~~~~g~~vi~-~~~~h  151 (285)
                      ...+++|.+++.... ++..-.......++++.+++++|.+.    ++++.|||++++.++..+.. +++.+++ .+.+|
T Consensus        12 ~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~-~~~~vlv~~~~~~   89 (363)
T TIGR02326        12 LTTSRTVKEAMLFDW-CTWDSDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVP-KDGKLLVVINGAY   89 (363)
T ss_pred             CCCCHHHHHHhCCCC-CCCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCC-CCCeEEEEeCChh
Confidence            446788888887655 33211223457888999999999752    57899999999999998874 6666544 45444


Q ss_pred             eeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHH
Q psy5413         152 IMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELK  231 (285)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~  231 (285)
                      ....  ...+      +..|.+++.++.++++.+|+++++++++++     .++++|.+.++.|+| |.++|   +++|.
T Consensus        90 ~~~~--~~~a------~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~-----~~~~~v~~~~~~~~t-G~~~~---i~~I~  152 (363)
T TIGR02326        90 GARI--VQIA------EYLGIPHHVVDTGEVEPPDVVEVEAILAAD-----PAITHIALVHCETTT-GILNP---IEAVA  152 (363)
T ss_pred             hHHH--HHHH------HHcCCceEEEeCCCCCCCCHHHHHHHHhhC-----CCccEEEEEeecCCc-cccCc---HHHHH
Confidence            3211  1122      345888888888777789999999999752     146788888889998 99999   99999


Q ss_pred             HHHHHcCCeEEEeCccC----ChhhhcccCCeEEEecccccCccee-EEeecCccccc
Q psy5413         232 ARCQEHNIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGAPVG-SILAGPEEFIQ  284 (285)
Q Consensus       232 ~la~~~gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~p~g-g~~~~~~~~i~  284 (285)
                      ++|++||+++++|++++    ++.....++|+++.|++|||++|.| |+++.+++.++
T Consensus       153 ~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~  210 (363)
T TIGR02326       153 KLAHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKCIQGVPGFGFVIARQAELA  210 (363)
T ss_pred             HHHHHcCCEEEEEccccccCcccchhhcCccEEEecCccccccCCcceEEEECHHHHH
Confidence            99999999999999977    2222234789999999999988555 88877766543

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.81  E-value=3.1e-19  Score=162.19  Aligned_cols=162  Identities=17%  Similarity=0.178  Sum_probs=127.6

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecc-cccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|...+|++.++++.|.+..++++||++|+..++.+++ ++||+|+++.+.|..+... ....      ...|.+++.+
T Consensus        58 ~~p~~~~Le~~lA~l~g~~~~v~~~sG~~Ai~~~l~all-~pGD~Vvv~~p~Y~~t~~~~~~~~------~~~g~~v~~v  130 (405)
T PRK08776         58 GNPTRDLLGEALAELEGGAGGVITATGMGAINLVLNALL-QPGDTLVVPHDAYGGSWRLFNALA------KKGHFALITA  130 (405)
T ss_pred             CChHHHHHHHHHHHHhCCCceEEEcCHHHHHHHHHHHHh-CCCCEEEEccCCchHHHHHHHHHH------HhcCcEEEEE
Confidence            467789999999999999888999999999999998876 6999999887766543210 1111      2346677766


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~  254 (285)
                      +.     .|++++++++++       ++++|++++|+||+ |.+.+   +++|+++|+++|+++|+|++|...   ..+.
T Consensus       131 ~~-----~d~~~l~~~i~~-------~tklV~l~~P~NPt-G~v~d---l~~I~~la~~~gi~vIvD~a~a~~~~~~pl~  194 (405)
T PRK08776        131 DL-----TDPRSLADALAQ-------SPKLVLIETPSNPL-LRITD---LRFVIEAAHKVGALTVVDNTFLSPALQKPLE  194 (405)
T ss_pred             CC-----CCHHHHHHhcCc-------CCeEEEEECCCCCC-CccCC---HHHHHHHHHHcCCEEEEECCCcccccCCccc
Confidence            54     388999999976       78999999999999 88888   999999999999999999998822   2233


Q ss_pred             ccCCeEEEecccccCcc---eeEEeec-Ccccc
Q psy5413         255 ASVDTVMFCLSKGLGAP---VGSILAG-PEEFI  283 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~p---~gg~~~~-~~~~i  283 (285)
                      .++|+++.|++|+++++   +||+++. ++++.
T Consensus       195 ~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~  227 (405)
T PRK08776        195 FGADLVLHSTTKYINGHSDVVGGAVVARDAELH  227 (405)
T ss_pred             ccCCEEEecCceeecCCCCceEEEEEeCCHHHH
Confidence            57899999999999874   4666654 45543

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.81  E-value=4.2e-19  Score=160.31  Aligned_cols=158  Identities=23%  Similarity=0.225  Sum_probs=126.4

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecc-cccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|...+|++.+++++|.+.++++++|+.|+..++. ++ ++||+|++++..|..+... ....      ...|.+++.+
T Consensus        45 ~~p~~~~le~~la~l~g~~~~l~~~sG~~al~~~l~-ll-~~Gd~Vl~~~~~y~~~~~~~~~~~------~~~G~~v~~v  116 (378)
T TIGR01329        45 GNPTRTALESLLAKLDKADRAFAFSSGMAALDVITR-LL-NNGDEIIAGDDLYGGTDRLLTQVV------PRSGVVVVHV  116 (378)
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-Hh-CCCCEEEEcCCCchHHHHHHHHHH------HHcCcEEEEe
Confidence            467789999999999999888999999999888776 45 6999999987766443221 0111      2458888887


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C--hhhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P--LAEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~--~~~~~  254 (285)
                      +..     |++++++++++       ++++|++++|+|++ |.+.|   +++|+++|+++|+++|+|+++. +  ...+.
T Consensus       117 d~~-----d~~~le~~i~~-------~tklv~le~psnpt-g~v~d---l~~I~~la~~~g~~vivD~a~~~~~~~~~l~  180 (378)
T TIGR01329       117 DTT-----DLDKVKAALGP-------KTKLVLLESPTNPL-QKIVD---IRKISEMAHAQNALVVVDNTMMSPLLCNPLE  180 (378)
T ss_pred             CCC-----CHHHHHHhcCc-------CceEEEEECCCCCC-Ceeec---HHHHHHHHHHcCCEEEEECCCcccccCChhh
Confidence            752     89999999987       89999999999999 99999   9999999999999999999986 2  12334


Q ss_pred             ccCCeEEEecccccCcc---eeEEeecCc
Q psy5413         255 ASVDTVMFCLSKGLGAP---VGSILAGPE  280 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~p---~gg~~~~~~  280 (285)
                      .++|+++.|++|+++|+   ++|+++.++
T Consensus       181 ~g~Di~v~S~tK~l~G~~~~~~G~v~~~~  209 (378)
T TIGR01329       181 LGADIVYHSATKFLAGHSDVMAGVLAVKG  209 (378)
T ss_pred             cCCcEEEEecceeccCCccceeEEEEeCc
Confidence            58899999999999883   477776543

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.81  E-value=4.5e-19  Score=157.91  Aligned_cols=190  Identities=22%  Similarity=0.230  Sum_probs=141.4

Q ss_pred             CCCcHHHHHHHHh--cccCCCCccCChhHHHHHHHHHhHcCCC--------cEEEcCChHHHHHHHHHHccccCCCeEEe
Q psy5413          77 SKPTMEMKNYMFN--CEVGDDVYLEDPTCKELQEKAAKLAGKE--------AAIFVPSGTMGNLIAIMTHCDRRDSEIIV  146 (285)
Q Consensus        77 ~~~~~~v~~a~~~--~~~~~~~y~~~~~~~~l~~~la~~~g~~--------~~~~~~~Gs~a~~~al~~~~~~~g~~vi~  146 (285)
                      ...+|.+..++.+  .......|...+...++++.++++++..        ..+++++|++++..++.++. ++|++|++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~-~~g~~vl~   88 (350)
T cd00609          10 FPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL-NPGDEVLV   88 (350)
T ss_pred             CCCCHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC-CCCCEEEE
Confidence            4466677777654  2223345666677888999999887643        46899999999999999986 58999999


Q ss_pred             cCCcceeeecccccccccccccccceeeeeeecCCCCCCCH--HHHHHHhcccccccCCceEEEEEecccCCCCeeeCCH
Q psy5413         147 GDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDL--DEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPM  224 (285)
Q Consensus       147 ~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~--~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~  224 (285)
                      +.+.|.......         ...+..++.++..+++..+.  +.++..+.+       ++++|++++++|++ |.++|.
T Consensus        89 ~~~~~~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~v~i~~~~~~t-G~~~~~  151 (350)
T cd00609          89 PDPTYPGYEAAA---------RLAGAEVVPVPLDEEGGFLLDLELLEAAKTP-------KTKLLYLNNPNNPT-GAVLSE  151 (350)
T ss_pred             cCCCchhHHHHH---------HHCCCEEEEEecccccCCccCHHHHHhhcCc-------cceEEEEECCCCCC-CcccCH
Confidence            988887654422         23478888888766655544  566666555       78999999999999 899999


Q ss_pred             HHHHHHHHHHHHcCCeEEEeCccCChh-----------hhcccCCeEEEecccccC--cceeEEeecCc-cccc
Q psy5413         225 QWLRELKARCQEHNIPVHMDGARLPLA-----------EVCASVDTVMFCLSKGLG--APVGSILAGPE-EFIQ  284 (285)
Q Consensus       225 ~~l~~i~~la~~~gi~li~Dea~~~~~-----------~~~~~~dv~~~s~sK~l~--~p~gg~~~~~~-~~i~  284 (285)
                      +++++|+++|+++|+++|+|+++....           ....+.|+++.|++|+++  ++..|+++.++ ++++
T Consensus       152 ~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~  225 (350)
T cd00609         152 EELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLE  225 (350)
T ss_pred             HHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHH
Confidence            999999999999999999999987211           111245677899999997  35567777766 5543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.81  E-value=9.4e-19  Score=162.92  Aligned_cols=203  Identities=16%  Similarity=0.108  Sum_probs=142.2

Q ss_pred             eeeeeccCCcCCCcHHHHHHHHhccc-------C------CCCccCChhHHHHHHHHHhHcC--------C--CcEEEcC
Q psy5413          67 RTVDIRSDTISKPTMEMKNYMFNCEV-------G------DDVYLEDPTCKELQEKAAKLAG--------K--EAAIFVP  123 (285)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~a~~~~~~-------~------~~~y~~~~~~~~l~~~la~~~g--------~--~~~~~~~  123 (285)
                      .+|.+....-..+.+.+.+.+.+...       +      ...|+...+..+|++.++++++        .  +.+++++
T Consensus        47 g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~  126 (496)
T PLN02376         47 GIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSG  126 (496)
T ss_pred             ceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEcc
Confidence            35666543333444555555544321       1      1235555567889999998864        1  3458888


Q ss_pred             ChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhccccccc
Q psy5413         124 SGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIH  201 (285)
Q Consensus       124 ~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~  201 (285)
                      |+++|++.++.+++ .+||.|+++.++|........        ...|++++.++..  +++.+|+++++++++... ..
T Consensus       127 Ga~~al~~l~~~l~-~pGD~Vlv~~P~Y~~~~~~~~--------~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~-~~  196 (496)
T PLN02376        127 GATGANETIMFCLA-DPGDVFLIPSPYYAAFDRDLR--------WRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQ-ES  196 (496)
T ss_pred             chHHHHHHHHHHhC-CCCCEEEECCCCccchHHHHH--------hhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHH-hc
Confidence            99999999999987 699999999988765433111        1248899999874  345789999987753211 01


Q ss_pred             CCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhccc-------CCe--EEE
Q psy5413         202 CASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVCAS-------VDT--VMF  262 (285)
Q Consensus       202 ~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~~~-------~dv--~~~  262 (285)
                      +.++++|++++|+||| |.+++.+++++|+++|++||+++|+||+|..+          ..+...       .+.  ++.
T Consensus       197 ~~~~k~l~l~nP~NPT-G~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~  275 (496)
T PLN02376        197 NKKVKGLILTNPSNPL-GTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVY  275 (496)
T ss_pred             CCCeeEEEEcCCCCCC-CccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEE
Confidence            2378999999999999 99999999999999999999999999998721          112111       132  378


Q ss_pred             ecccccCc--ceeEEeecCc
Q psy5413         263 CLSKGLGA--PVGSILAGPE  280 (285)
Q Consensus       263 s~sK~l~~--p~gg~~~~~~  280 (285)
                      |+||.++.  .+.|++++.+
T Consensus       276 S~SK~~glpGlRvG~li~~~  295 (496)
T PLN02376        276 SLSKDMGLPGFRVGIVYSFN  295 (496)
T ss_pred             eccccCCCCcceEEEEEECC
Confidence            99998864  6778887743

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.81  E-value=4.5e-19  Score=159.83  Aligned_cols=191  Identities=20%  Similarity=0.184  Sum_probs=143.0

Q ss_pred             cCCcCCCcHHHHHHHHhcccC---CC-Ccc-CChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHcccc---CCC
Q psy5413          73 SDTISKPTMEMKNYMFNCEVG---DD-VYL-EDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDR---RDS  142 (285)
Q Consensus        73 ~~~~~~~~~~v~~a~~~~~~~---~~-~y~-~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~---~g~  142 (285)
                      ++..+.++|.+.+++.++...   .. .|. ......++++.+++++|.+.  .+++++|++++..+++++...   +++
T Consensus        26 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~  105 (371)
T PRK13520         26 SSMCTEPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKP  105 (371)
T ss_pred             eeeecCchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCc
Confidence            333466889988888765542   11 121 22234789999999999754  588999999999999877532   467


Q ss_pred             eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413         143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL  222 (285)
Q Consensus       143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~  222 (285)
                      +|++++..|.+.....         ...|.+++.++.++++.+|+++|+++|++       ++++|++..++|++ |.+.
T Consensus       106 ~vl~~~~~h~s~~~~~---------~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-------~~~~vi~~~~~~~t-G~~~  168 (371)
T PRK13520        106 NIVVPESAHFSFDKAA---------DMLGVELRRAPLDDDYRVDVKAVEDLIDD-------NTIGIVGIAGTTEL-GQVD  168 (371)
T ss_pred             eEEecCcchHHHHHHH---------HHcCceEEEecCCCCCcCCHHHHHHHHhh-------CCEEEEEEcCCcCC-cccC
Confidence            8999888887654322         23478888888877778999999999987       67777777777888 9999


Q ss_pred             CHHHHHHHHHHHHHcCCeEEEeCccCChh----------h-hcccCCeEEEecccccCc--ceeEEeecCcccc
Q psy5413         223 PMQWLRELKARCQEHNIPVHMDGARLPLA----------E-VCASVDTVMFCLSKGLGA--PVGSILAGPEEFI  283 (285)
Q Consensus       223 ~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~-~~~~~dv~~~s~sK~l~~--p~gg~~~~~~~~i  283 (285)
                      |   +++|.++|+++|+++|+|++|+...          . ...++|.+.++.+||+.+  |.|++++.+++++
T Consensus       169 ~---l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~  239 (371)
T PRK13520        169 P---IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYL  239 (371)
T ss_pred             C---HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEEEEcCHHHH
Confidence            9   9999999999999999999988221          0 124678888899998754  6777777776554

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.81  E-value=6.4e-19  Score=170.60  Aligned_cols=203  Identities=14%  Similarity=0.114  Sum_probs=135.2

Q ss_pred             CCcHHHHHHHHhcccC--CCCc--cCChhHHHHHHHHHhHcC---CCcEEEcCChHHHHHHHHHHccc-c---C------
Q psy5413          78 KPTMEMKNYMFNCEVG--DDVY--LEDPTCKELQEKAAKLAG---KEAAIFVPSGTMGNLIAIMTHCD-R---R------  140 (285)
Q Consensus        78 ~~~~~v~~a~~~~~~~--~~~y--~~~~~~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~al~~~~~-~---~------  140 (285)
                      +.+|++.+|+.+|+..  +..+  ..++...+|.++|++..+   .++++|++|||+|++.|+|++++ .   .      
T Consensus       382 h~~p~I~~Ai~~Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~  461 (817)
T PLN02974        382 TLQPELARAVAYAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENS  461 (817)
T ss_pred             CCCHHHHHHHHHHHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            3699999999988763  3222  246778899999999765   35789999999999999999843 1   1      


Q ss_pred             ---------CC-eEEe-cCCcceeeeccccccccccccccc-ce----eeeee--ec------------CCCC-------
Q psy5413         141 ---------DS-EIIV-GDCSHIMLWEQGGASQTSVYSQIG-RV----LMRGV--TN------------QKDG-------  183 (285)
Q Consensus       141 ---------g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~-g~----~~~~~--~~------------~~~~-------  183 (285)
                               ++ +||. ...||+.+..+..+...+.|...+ ..    ....+  |.            ...+       
T Consensus       462 ~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~  541 (817)
T PLN02974        462 GNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGE  541 (817)
T ss_pred             ccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCcccccccccc
Confidence                     22 2443 678899885543332112222111 00    00111  10            0000       


Q ss_pred             ---------------------CCCHHHHHHHhcccc-cccCCceEEEEEecc-cCCCCeeeCCHHHHHHHHHHHHHcCCe
Q psy5413         184 ---------------------TFDLDEMEAKFSTAD-NIHCASTSLVCVENT-HNYCGGTVLPMQWLRELKARCQEHNIP  240 (285)
Q Consensus       184 ---------------------~~d~~~l~~~i~~~~-~~~~~~~~~v~i~~~-~n~~gG~~~~~~~l~~i~~la~~~gi~  240 (285)
                                           ...++.+++.|++.. ..+++++++|++|++ ++.+|..+.|++|+++|+++|++||++
T Consensus       542 ~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gil  621 (817)
T PLN02974        542 ETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIP  621 (817)
T ss_pred             ccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCE
Confidence                                 001255666664310 123458999999995 888867778899999999999999999


Q ss_pred             EEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecCc
Q psy5413         241 VHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPE  280 (285)
Q Consensus       241 li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~  280 (285)
                      ||+||+++++     .+..+..++.  +.+++|+|++   |+++++++++
T Consensus       622 LI~DEV~TGfGRtG~~fa~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~  671 (817)
T PLN02974        622 VIFDEVFTGLWRLGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEE  671 (817)
T ss_pred             EEEeecccCCCcccchhhHHhcCCCCCEEeecccccCCCCccEEEEEcHH
Confidence            9999998844     4455666666  7888899987   8888777643

>PRK06149 hypothetical protein; Provisional

Probab=99.81  E-value=7.7e-19  Score=175.09  Aligned_cols=217  Identities=16%  Similarity=0.189  Sum_probs=143.6

Q ss_pred             cCCeeeeeccCC--cCCCcHHHHHHHHhcccC--CC-CccCChhHHHHHHHHHhHc--CCCcEEEcCChHHHHHHHHHHc
Q psy5413          64 VNIRTVDIRSDT--ISKPTMEMKNYMFNCEVG--DD-VYLEDPTCKELQEKAAKLA--GKEAAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        64 ~~~~~~~~~~~~--~~~~~~~v~~a~~~~~~~--~~-~y~~~~~~~~l~~~la~~~--g~~~~~~~~~Gs~a~~~al~~~  136 (285)
                      .|++++||.++.  .++.||+|.+|+.++...  .. .| ..+...+++++|++++  +.+.++|++|||+|++.|++++
T Consensus       583 dG~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~l~~~~~~-~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklA  661 (972)
T PRK06149        583 AGRSYLDMVNNVTVLGHGHPRLAAAAARQWSLLNTNSRF-HYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLA  661 (972)
T ss_pred             CCCEEEECCCCccccCCCCHHHHHHHHHHHHhccccccc-cCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHH
Confidence            478899998763  456899999999887753  22 23 3566889999999997  4678899999999999999988


Q ss_pred             cccCCCe-EE-ecCCcceeeeccccccc----cc-cccc-ccceeeeeeecCCC--C-CCC-----HHHHHHHhcccccc
Q psy5413         137 CDRRDSE-II-VGDCSHIMLWEQGGASQ----TS-VYSQ-IGRVLMRGVTNQKD--G-TFD-----LDEMEAKFSTADNI  200 (285)
Q Consensus       137 ~~~~g~~-vi-~~~~~h~~~~~~~~~~~----~~-~~~~-~~g~~~~~~~~~~~--~-~~d-----~~~l~~~i~~~~~~  200 (285)
                      ....|+. || +...||+.+.....++.    .. .+.. ..+...+..|....  + ..+     .+++++.++.. ..
T Consensus       662 r~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~  740 (972)
T PRK06149        662 WAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEEL-DA  740 (972)
T ss_pred             HHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHH-hh
Confidence            7555653 33 46788987643222210    00 0000 01122222221111  1 112     34555544321 12


Q ss_pred             cCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh------hcccCCeE--EEecccccCc--
Q psy5413         201 HCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE------VCASVDTV--MFCLSKGLGA--  270 (285)
Q Consensus       201 ~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~------~~~~~dv~--~~s~sK~l~~--  270 (285)
                      +++++++|++|++++..|..+.|++++++|+++|++||+++|+||+++++..      ..++.++.  +.+++|.+++  
T Consensus       741 ~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~gK~lg~G~  820 (972)
T PRK06149        741 SGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGNGH  820 (972)
T ss_pred             cCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEecccccCCe
Confidence            3458999999999998877788899999999999999999999999874321      22334444  5688899987  


Q ss_pred             ceeEEeecCcccc
Q psy5413         271 PVGSILAGPEEFI  283 (285)
Q Consensus       271 p~gg~~~~~~~~i  283 (285)
                      |+|+++++ ++++
T Consensus       821 Pl~av~~~-~~i~  832 (972)
T PRK06149        821 PLGAVITR-REIA  832 (972)
T ss_pred             eeEEEEEc-HHHH
Confidence            88776654 4443

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.81  E-value=1.6e-19  Score=161.69  Aligned_cols=190  Identities=18%  Similarity=0.152  Sum_probs=141.6

Q ss_pred             eeeec-cCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCC-Ce
Q psy5413          68 TVDIR-SDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRD-SE  143 (285)
Q Consensus        68 ~~~~~-~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g-~~  143 (285)
                      .++|. |+++.++++.+    ..  .....|. ++...+|++.+++++|.+.  +++++|+++++..++.+++ ++| +.
T Consensus        30 ~~~l~~Nenp~~~~~~~----~~--~~~~~Yp-~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~-~~g~~~  101 (351)
T PRK01688         30 DVWLNANEYPTAVEFQL----TQ--QTLNRYP-ECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFC-EPGKDA  101 (351)
T ss_pred             ceEecCCCCCCCCChhh----cc--cccccCC-CCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc-CCCCCE
Confidence            46776 45555555543    11  1234454 4557899999999998654  6888889999999999876 476 78


Q ss_pred             EEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCC
Q psy5413         144 IIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLP  223 (285)
Q Consensus       144 vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~  223 (285)
                      |+++.++|.....   ..      +..|.+++.++.++++.+|++++++++ +       ++++|++++|+||| |.+++
T Consensus       102 vli~~P~y~~y~~---~~------~~~G~~~~~v~~~~~~~~d~~~l~~~~-~-------~~~lv~l~nPnNPT-G~~~~  163 (351)
T PRK01688        102 ILYCPPTYGMYSV---SA------ETIGVEIRTVPTLDNWQLDLPAIADNL-D-------GVKVVYVCSPNNPT-GNLIN  163 (351)
T ss_pred             EEEcCCCHHHHHH---HH------HHcCCEEEEeecCCCCCCCHHHHHHhc-c-------CCcEEEEeCCCCCC-CCCCC
Confidence            9988887754432   22      345889999988767789999999987 4       67999999999999 99999


Q ss_pred             HHHHHHHHHHHHHcCCeEEEeCccCChh------hhc-ccCCeE-EEecccccCc--ceeEEeecCccccc
Q psy5413         224 MQWLRELKARCQEHNIPVHMDGARLPLA------EVC-ASVDTV-MFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       224 ~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~-~~~dv~-~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      .+++++|++.|++ +++||+||+|..+.      .+. ....++ +.||||++|.  .+.|++++++++++
T Consensus       164 ~~~l~~l~~~~~~-~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i~  233 (351)
T PRK01688        164 PQDLRTLLELTRG-KAIVVADEAYIEFCPQASLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANEEVIN  233 (351)
T ss_pred             HHHHHHHHHhCCC-CcEEEEECchhhcCCCCChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCHHHHH
Confidence            9999999998876 68999999987221      222 233444 8999998874  66788888887754

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.80  E-value=5.5e-19  Score=158.60  Aligned_cols=197  Identities=13%  Similarity=0.079  Sum_probs=140.5

Q ss_pred             CCeeeeeccC-CcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCC
Q psy5413          65 NIRTVDIRSD-TISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRD  141 (285)
Q Consensus        65 ~~~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g  141 (285)
                      +.++++|..+ ++.++++.+++++.+.......|.. +...++++.++++++.+  .+++++|+++++..++.++  .+|
T Consensus        19 ~~~~i~l~~~~~~~~~p~~~~~a~~~~~~~~~~y~~-~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l--~~g   95 (356)
T PRK08056         19 PDQLLDFSANINPLGMPVSLKRAIIDNLDCAERYPD-VEYRHLHQALARHHQVPASWILAGNGETESIFAVVSGL--KPR   95 (356)
T ss_pred             hhhEEEeccccCCCCCCHHHHHHHHHHHHhcccCcC-ccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh--CCC
Confidence            3567888865 5556788999998876554445653 45899999999999764  4688888899998888874  367


Q ss_pred             CeEEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCe
Q psy5413         142 SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGG  219 (285)
Q Consensus       142 ~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG  219 (285)
                      + +++..+.+.....   ..      +..|.+++.++..++  ..+| +++++.+.+       ++++|++++|+||| |
T Consensus        96 ~-viv~~P~y~~~~~---~~------~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~-------~~k~v~l~~p~NPT-G  156 (356)
T PRK08056         96 R-AMIVTPGFAEYRR---AL------QQVGCEIRRYSLREADGWQLT-DAILEALTP-------DLDCLFLCTPNNPT-G  156 (356)
T ss_pred             C-EEEeCCCcHHHHH---HH------HHcCCeEEEEecccccCCCcc-HHHHHhccC-------CCCEEEEeCCcCCC-C
Confidence            6 4555554332222   22      345888888887433  3444 355566654       78999999999999 8


Q ss_pred             eeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhccc--CCeEEEecccccCc--ceeEEeec-Ccccc
Q psy5413         220 TVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVCAS--VDTVMFCLSKGLGA--PVGSILAG-PEEFI  283 (285)
Q Consensus       220 ~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~~~--~dv~~~s~sK~l~~--p~gg~~~~-~~~~i  283 (285)
                      .+++.+++++|+++|++||+++|+||+|..+.       .....  ..+++.|+||+++.  .+.|+++. +++++
T Consensus       157 ~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~  232 (356)
T PRK08056        157 LLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAV  232 (356)
T ss_pred             CCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcchhheeeecCCHHHH
Confidence            89999999999999999999999999976221       11111  23558999999885  66777776 44543

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.80  E-value=8.5e-19  Score=156.34  Aligned_cols=176  Identities=15%  Similarity=0.113  Sum_probs=133.5

Q ss_pred             CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCC--CcEEEcCChHHHHHHHHHHccccCCCeEEec---CCccee
Q psy5413          79 PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGK--EAAIFVPSGTMGNLIAIMTHCDRRDSEIIVG---DCSHIM  153 (285)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~--~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~---~~~h~~  153 (285)
                      .+|.+.++..+......  +..+.+.+|++.+++++|.  +.+++++||++|+..++.+++ ++||+|++.   .++|.+
T Consensus        34 ~~~~~~~~~~~~~~~~~--g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~-~~gd~Vli~~~d~p~~~s  110 (346)
T TIGR03576        34 GGFKIDEEDLELLETYV--GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALE-PPGRKVVHYLPEKPAHPS  110 (346)
T ss_pred             CChhHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhC-CCCCEEEECCCCCCCchh
Confidence            68899988877664321  4567899999999999998  778999999999999999987 689998863   467766


Q ss_pred             eecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHH
Q psy5413         154 LWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR  233 (285)
Q Consensus       154 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~l  233 (285)
                      ......+.         |.+++..       .++++++. . +       ++++|++++ ++++ |.+++.+.|++|+++
T Consensus       111 ~~~~~~l~---------ga~~~~~-------~~l~~l~~-~-~-------~~~lIiitg-~s~~-G~v~~~~~L~~i~~l  163 (346)
T TIGR03576       111 IPRSCKLA---------GAEYFES-------DELSELKK-I-D-------GTSLVVITG-STMD-LKVVSEEDLKRVIKQ  163 (346)
T ss_pred             HHHHHHHc---------CCEEecc-------CCHHHHhh-C-c-------CceEEEEEC-CCCC-CcccCHHHHHHHHHH
Confidence            54433333         5554322       25555432 1 2       567888866 5777 899999999999999


Q ss_pred             HHHcCCeEEEeCccCC-hh---h----hcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         234 CQEHNIPVHMDGARLP-LA---E----VCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       234 a~~~gi~li~Dea~~~-~~---~----~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      |++||++|++||+|.. ..   .    ...+.|+++.|+||+++|+++|++++++++++
T Consensus       164 a~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKalaG~r~G~v~~~~~li~  222 (346)
T TIGR03576       164 AKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMDGPRGGLLAGRKELVD  222 (346)
T ss_pred             HHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhccccceEEEEeCHHHHH
Confidence            9999999999999882 11   1    11246888999999998889999999988765

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.80  E-value=1.3e-18  Score=157.41  Aligned_cols=204  Identities=17%  Similarity=0.190  Sum_probs=138.1

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCC----CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHc
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD----DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~----~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~  136 (285)
                      |++++||.++    ..++.+|.+.+++.++....    ..| .++...++++.+++++|.+.+++++||++|++.+++++
T Consensus        26 g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g~~~~~~~~sg~~a~~~a~~~~  104 (379)
T TIGR00707        26 GKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSNLY-YTEPQEELAEKLVEHSGADRVFFCNSGAEANEAALKLA  104 (379)
T ss_pred             CCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhcccccccc-CCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHH
Confidence            5677888773    34556799999988766531    233 46779999999999999999999999999999999876


Q ss_pred             cc--c----CCCeEEecC-CcceeeecccccccccccccccceeeeeeecCCCC----CCCHHHHHHHhcccccccCCce
Q psy5413         137 CD--R----RDSEIIVGD-CSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDG----TFDLDEMEAKFSTADNIHCAST  205 (285)
Q Consensus       137 ~~--~----~g~~vi~~~-~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~d~~~l~~~i~~~~~~~~~~~  205 (285)
                      ..  .    ++++|++.+ .||.+............+..      ...+...+.    ..|++++++.+++       ++
T Consensus       105 ~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~  171 (379)
T TIGR00707       105 RKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQK------GFEPLVPGFSYAPYNDIESLKKAIDD-------ET  171 (379)
T ss_pred             HHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhc------cCCCCCCCceeeCCCCHHHHHHHhhh-------Ce
Confidence            31  1    257777654 55655433221110000000      001111111    1289999999976       78


Q ss_pred             EEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh----h----c-ccCCeEEEecccccCc-ceeEE
Q psy5413         206 SLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE----V----C-ASVDTVMFCLSKGLGA-PVGSI  275 (285)
Q Consensus       206 ~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~----~----~-~~~dv~~~s~sK~l~~-p~gg~  275 (285)
                      ++|+++++++++|....+.+++++|.++|++||+++|+||+|.++..    .    . ...|  +.++||++++ .+.|+
T Consensus       172 ~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d--~~t~sK~~~~G~riG~  249 (379)
T TIGR00707       172 AAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPD--IITLAKGLGGGVPIGA  249 (379)
T ss_pred             eEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCC--EEEEcccccCCcccEE
Confidence            99999988777633357899999999999999999999999873311    1    1 1234  3478999986 34566


Q ss_pred             eecCccccc
Q psy5413         276 LAGPEEFIQ  284 (285)
Q Consensus       276 ~~~~~~~i~  284 (285)
                      +++++++++
T Consensus       250 ~~~~~~~~~  258 (379)
T TIGR00707       250 TLAKEEVAE  258 (379)
T ss_pred             EEEcHHHHh
Confidence            777777654

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.80  E-value=1.9e-18  Score=158.23  Aligned_cols=191  Identities=23%  Similarity=0.267  Sum_probs=141.5

Q ss_pred             CCCcHHHHHHHHhcccCCC--Ccc-----CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCC
Q psy5413          77 SKPTMEMKNYMFNCEVGDD--VYL-----EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDC  149 (285)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~--~y~-----~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~  149 (285)
                      ...++++.+++.+......  .|.     ....+.++++.+++++|.+.+++++||+.|+..++.. + .+|++||+++.
T Consensus        91 s~l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~gae~alvv~sg~aAi~l~l~~-l-~~GdeVIvs~~  168 (454)
T TIGR00474        91 APLAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGAEDALVVNNNAAAVLLALNT-L-AKGKEVIVSRG  168 (454)
T ss_pred             CCCCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHH-h-CCcCEEEECCC
Confidence            4457899999877655321  111     2344789999999999999999999999999988855 4 58999999876


Q ss_pred             cceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCC-Ce--eeCCHHH
Q psy5413         150 SHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYC-GG--TVLPMQW  226 (285)
Q Consensus       150 ~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~-gG--~~~~~~~  226 (285)
                      .|........+.   ......|++++.++.+.  ..++++++++|++       +|++|++++++|++ -|  .+.|   
T Consensus       169 e~v~~ggs~~i~---~~~~~~G~~~~~v~~~~--~~~l~dle~aI~~-------~T~lv~~~h~sN~~~~G~~~~~d---  233 (454)
T TIGR00474       169 ELVEIGGSFRIP---DVMEQSGAKLVEVGTTN--RTHLKDYEDAITE-------NTALLLKVHTSNYRIVGFTEEVS---  233 (454)
T ss_pred             hhhhhcchhhHH---HHHHHcCCEEEEeCCCC--CCCHHHHHHhcCc-------CCEEEEEEccCcccccCCCCCCC---
Confidence            542110000010   01134588888886532  3589999999987       89999999999884 13  5788   


Q ss_pred             HHHHHHHHHHcCCeEEEeCccCC---------------hhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         227 LRELKARCQEHNIPVHMDGARLP---------------LAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       227 l~~i~~la~~~gi~li~Dea~~~---------------~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      +++|+++||+||+++++|.+.+.               ......++|++++|.+|+++||.+|++++++++++
T Consensus       234 l~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~~G~i~g~~~~i~  306 (454)
T TIGR00474       234 IAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQAGIIVGKKELIE  306 (454)
T ss_pred             HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCeEEEEEECHHHHH
Confidence            99999999999999999986220               01234689999999999999999999999888764

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.80  E-value=4.9e-19  Score=159.33  Aligned_cols=161  Identities=17%  Similarity=0.208  Sum_probs=126.9

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecc-cccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|...+|++.++++.|.+.+++++||++|+..++. ++ ++||+|++.++.|..+... ....      ...|.++..+
T Consensus        50 ~~pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~~~-ll-~~Gd~Vl~~~~~y~~t~~~~~~~~------~~~G~~v~~v  121 (366)
T PRK08247         50 GNPTRGVLEQAIADLEGGDQGFACSSGMAAIQLVMS-LF-RSGDELIVSSDLYGGTYRLFEEHW------KKWNVRFVYV  121 (366)
T ss_pred             CCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHH-Hh-CCCCEEEEecCCcCcHHHHHHHHh------hccCceEEEE
Confidence            578899999999999999999999999999998764 45 5899999887765543211 1111      2357777777


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Ch--hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PL--AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~--~~~~  254 (285)
                      +.     .|++++++++++       ++++|++++|+||+ |.+.+   +++|+++|++||+++|+|+++. +.  ..+.
T Consensus       122 d~-----~d~~~l~~~i~~-------~tklv~le~P~NP~-~~~~d---l~~I~~la~~~g~~lIvD~t~~~~~~~~p~~  185 (366)
T PRK08247        122 NT-----ASLKAIEQAITP-------NTKAIFIETPTNPL-MQETD---IAAIAKIAKKHGLLLIVDNTFYTPVLQRPLE  185 (366)
T ss_pred             CC-----CCHHHHHHhccc-------CceEEEEECCCCCC-CcHHH---HHHHHHHHHHcCCEEEEECCCccccccCchh
Confidence            64     389999999987       78999999999998 66666   9999999999999999999986 22  1223


Q ss_pred             ccCCeEEEecccccCcc---eeEEeecC-cccc
Q psy5413         255 ASVDTVMFCLSKGLGAP---VGSILAGP-EEFI  283 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~p---~gg~~~~~-~~~i  283 (285)
                      .++|+++.|++|+++++   ++|+++.+ ++++
T Consensus       186 ~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~  218 (366)
T PRK08247        186 EGADIVIHSATKYLGGHNDVLAGLVVAKGQELC  218 (366)
T ss_pred             cCCcEEEeecceeccCCCceeeeEEecChHHHH
Confidence            57899999999999973   78888875 4543

>PRK04311 selenocysteine synthase; Provisional

Probab=99.80  E-value=1.8e-18  Score=158.76  Aligned_cols=191  Identities=23%  Similarity=0.244  Sum_probs=141.4

Q ss_pred             CCCcHHHHHHHHhcccCCC--Ccc-----CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCC
Q psy5413          77 SKPTMEMKNYMFNCEVGDD--VYL-----EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDC  149 (285)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~--~y~-----~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~  149 (285)
                      ...++++.+++.+...+..  .|.     ..+.+.++++.+++++|.+.+++++||+.|+..++.+ + .+|++||+++.
T Consensus        96 s~l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Gae~a~vv~sgtaAl~l~l~~-l-~~GdeVIvs~~  173 (464)
T PRK04311         96 ALLSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGAEDALVVNNNAAAVLLALNA-L-AAGKEVIVSRG  173 (464)
T ss_pred             CCCCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHH-h-CCCCEEEEcch
Confidence            4467889999877665321  111     1344679999999999999999999999999998866 4 58999999875


Q ss_pred             cceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCC--CC-eeeCCHHH
Q psy5413         150 SHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNY--CG-GTVLPMQW  226 (285)
Q Consensus       150 ~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~--~g-G~~~~~~~  226 (285)
                      .|..+.....+.   ......|++++.++.+.  ..++++++++|++       +|++|++++++|+  +| +...|   
T Consensus       174 e~~~~ggs~~i~---~~~~~~G~~l~~v~~~~--~t~~~dle~aI~~-------~TklV~~vh~sN~~i~G~~~~~d---  238 (464)
T PRK04311        174 ELVEIGGAFRIP---DVMRQAGARLVEVGTTN--RTHLRDYEQAINE-------NTALLLKVHTSNYRIEGFTKEVS---  238 (464)
T ss_pred             hhhhcCcchhhH---HHHHHCCcEEEEECCCC--CCCHHHHHHhcCc-------cCeEEEEEcCCCccccccCCcCC---
Confidence            443211000010   01134588888887532  3479999999987       8999999999987  32 45678   


Q ss_pred             HHHHHHHHHHcCCeEEEeCccCC------------h---hhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         227 LRELKARCQEHNIPVHMDGARLP------------L---AEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       227 l~~i~~la~~~gi~li~Dea~~~------------~---~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      +++|+++||+||+++++|.+.+.            .   ..+..++|++++|.+|+++||.+|++++++++++
T Consensus       239 l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~~G~i~g~~~li~  311 (464)
T PRK04311        239 LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQAGIIVGKKELIA  311 (464)
T ss_pred             HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCceEEEEEcHHHHH
Confidence            99999999999999999995321            1   1123689999999999999999999999988765

>PRK07505 hypothetical protein; Provisional

Probab=99.80  E-value=1.5e-18  Score=158.26  Aligned_cols=194  Identities=17%  Similarity=0.175  Sum_probs=134.0

Q ss_pred             CCeeeeeccCCcC--CCcHHHHHHHHhcccCC---CCc-----cCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTIS--KPTMEMKNYMFNCEVGD---DVY-----LEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~--~~~~~v~~a~~~~~~~~---~~y-----~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~  134 (285)
                      |++++||.+.++.  +.+|+|.+|+.+++...   ...     ...+...++++.++++++. ..+++++|++|++.+++
T Consensus        45 g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~~~~sG~~a~~~ai~  123 (402)
T PRK07505         45 GHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA-SVLTFTSCSAAHLGILP  123 (402)
T ss_pred             CceEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC-CEEEECChHHHHHHHHH
Confidence            6778898754433  68999999999877521   111     1245689999999999988 77888899999999998


Q ss_pred             Hcccc--C-CCe-E-EecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413         135 THCDR--R-DSE-I-IVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVC  209 (285)
Q Consensus       135 ~~~~~--~-g~~-v-i~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~  209 (285)
                      ++...  + ++. + +....+|.+........      . .+..++.+|.     .|++++++++++       ++++++
T Consensus       124 ~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~------~-~~~~v~~~~~-----~d~~~l~~~~~~-------~~~~~v  184 (402)
T PRK07505        124 LLASGHLTGGVPPHMVFDKNAHASLNILKGIC------A-DETEVETIDH-----NDLDALEDICKT-------NKTVAY  184 (402)
T ss_pred             HHHhcccCCCCCCEEEEchhhhHhHHhhhhhh------h-cCCeEEEeCC-----CCHHHHHHHHhc-------CCCEEE
Confidence            75421  2 332 4 44567786542211111      1 1345566654     389999999876       457777


Q ss_pred             EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-------Chhhh---cc--cCC--eEEEecccccCcceeEE
Q psy5413         210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-------PLAEV---CA--SVD--TVMFCLSKGLGAPVGSI  275 (285)
Q Consensus       210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-------~~~~~---~~--~~d--v~~~s~sK~l~~p~gg~  275 (285)
                      +.+|+|++ |.+.+   +++|.++|++||++||+||+|+       +....   ..  ..|  +++.|++|.++++ ||+
T Consensus       185 l~~p~~~~-G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~-Gg~  259 (402)
T PRK07505        185 VADGVYSM-GGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS-GGV  259 (402)
T ss_pred             EEeccccc-CCcCC---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc-CeE
Confidence            78888899 78889   8999999999999999999984       11111   11  234  4478999999875 566


Q ss_pred             ee-cCcccc
Q psy5413         276 LA-GPEEFI  283 (285)
Q Consensus       276 ~~-~~~~~i  283 (285)
                      ++ ++++++
T Consensus       260 ~~~~~~~~~  268 (402)
T PRK07505        260 IMLGDAEQI  268 (402)
T ss_pred             EEeCCHHHH
Confidence            65 566554

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.80  E-value=2.1e-18  Score=157.77  Aligned_cols=159  Identities=18%  Similarity=0.151  Sum_probs=129.4

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecc-cccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|...++|+.++++.|.+.++.++||++|+.+++..++ ++||+||+++..|..+... ....      ...|.+++.+
T Consensus        67 ~~pt~~~le~~la~l~g~~~~v~fsSG~~Ai~~al~~ll-~~Gd~VI~~~~~y~~t~~~~~~~l------~~~Gi~v~~v  139 (437)
T PRK05613         67 TNPTVEALENRIASLEGGVHAVAFASGQAAETAAILNLA-GAGDHIVTSPRLYGGTETLFLVTL------NRLGIEVTFV  139 (437)
T ss_pred             cChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhc-CCCCEEEECCCccHHHHHHHHHHH------HhcCeEEEEE
Confidence            568899999999999999889999999999999998876 6899999887777654211 0111      2458888877


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC---hhhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP---LAEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~---~~~~~  254 (285)
                      +. +   .|+++++++|++       +|++|+++.+.|++ |.+.|   +++|+++|+++|+++|+|.+++.   .....
T Consensus       140 d~-~---~d~e~l~~~l~~-------~tk~V~~e~~~Np~-~~v~d---i~~I~~la~~~gi~livD~t~a~g~~~~p~~  204 (437)
T PRK05613        140 EN-P---DDPESWQAAVQP-------NTKAFFGETFANPQ-ADVLD---IPAVAEVAHRNQVPLIVDNTIATAALVRPLE  204 (437)
T ss_pred             CC-C---CCHHHHHHhCCc-------cCeEEEEECCCCCC-CcccC---HHHHHHHHHHcCCeEEEECCCccccccChHH
Confidence            62 2   288999999987       78999999999999 79999   99999999999999999999872   22334


Q ss_pred             ccCCeEEEecccccCc---ceeEEeecC
Q psy5413         255 ASVDTVMFCLSKGLGA---PVGSILAGP  279 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~---p~gg~~~~~  279 (285)
                      .++|+++.|++|++++   -+||+++.+
T Consensus       205 ~GaDivv~S~~K~l~G~gd~~gG~vv~~  232 (437)
T PRK05613        205 LGADVVVASLTKFYTGNGSGLGGVLIDG  232 (437)
T ss_pred             hCCCEEEeeccceecCCCcceeEEEEec
Confidence            5899999999999998   357877754

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.80  E-value=1.6e-18  Score=156.68  Aligned_cols=221  Identities=19%  Similarity=0.147  Sum_probs=141.4

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCC----cCCCcHHHHHHHHhcccCCCCccCChh
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDT----ISKPTMEMKNYMFNCEVGDDVYLEDPT  102 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~a~~~~~~~~~~y~~~~~  102 (285)
                      |..+.++.+.++|+..                      |++++||.++.    .++ +|++.+++.+++.....+. +..
T Consensus        12 ~~~~~~~~G~~l~d~d----------------------g~~~lD~~s~~~~~~lG~-~p~v~~a~~~~~~~~~~~~-~~~   67 (375)
T PRK04260         12 AIEFVKAEGNYLIDTD----------------------GKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWHSP-NLY   67 (375)
T ss_pred             CceEEEeeeCEEEeCC----------------------CCEEEECCCCcccccCCC-CHHHHHHHHHHHHhcCccc-Ccc
Confidence            4556667777777743                      45667776542    355 8999999998775322121 223


Q ss_pred             HHHHHHHHHhHc-CC-C-cEEEcCChHHHHHHHHHHccccCC-CeEEe-cCCcceeeecccccccccccccccceeeeee
Q psy5413         103 CKELQEKAAKLA-GK-E-AAIFVPSGTMGNLIAIMTHCDRRD-SEIIV-GDCSHIMLWEQGGASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus       103 ~~~l~~~la~~~-g~-~-~~~~~~~Gs~a~~~al~~~~~~~g-~~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~  177 (285)
                      ..++++.+++.+ +. + .++|++||++|++.|++++....+ ++|++ ...+|+++......+....+...++..+..+
T Consensus        68 ~~~~~~~la~~l~~~~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~  147 (375)
T PRK04260         68 LNSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHF  147 (375)
T ss_pred             CCHHHHHHHHHHhcCcCCEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCe
Confidence            455666666654 22 2 358999999999999999753333 34554 5788987754332221111112222222222


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----h
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----E  252 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~  252 (285)
                      +..+  ..|++++++.+.+       ++++|++|+++|++|....+.++|+++.++|+++|+++|+||+|+++.     .
T Consensus       148 ~~~~--~~dl~~l~~~l~~-------~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~  218 (375)
T PRK04260        148 SYAI--FNDLNSVKALVNK-------NTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLY  218 (375)
T ss_pred             EEeC--CCCHHHHHHhcCC-------CeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchh
Confidence            2111  2489999998865       789999999999984445667999999999999999999999987321     1


Q ss_pred             hc----ccCCeEEEecccccCc--ceeEEeecCcccc
Q psy5413         253 VC----ASVDTVMFCLSKGLGA--PVGSILAGPEEFI  283 (285)
Q Consensus       253 ~~----~~~dv~~~s~sK~l~~--p~gg~~~~~~~~i  283 (285)
                      ..    ...|  +.++||.+++  |.|++ +++++++
T Consensus       219 ~~~~~~~~pd--i~t~sK~l~~G~~ig~~-~~~~~~~  252 (375)
T PRK04260        219 AFEHYGIEPD--IFTLAKGLANGVPVGAM-LAKSSLG  252 (375)
T ss_pred             hhHhhCCCCC--EEEecccccCCcceEEE-EEcHHHH
Confidence            11    1234  4588999985  55554 4455544

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.80  E-value=1.1e-18  Score=158.80  Aligned_cols=197  Identities=16%  Similarity=0.092  Sum_probs=143.7

Q ss_pred             eeeeeccCCc---CC--C-cHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcC--------CCcE--EEcCChHHH
Q psy5413          67 RTVDIRSDTI---SK--P-TMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAG--------KEAA--IFVPSGTMG  128 (285)
Q Consensus        67 ~~~~~~~~~~---~~--~-~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g--------~~~~--~~~~~Gs~a  128 (285)
                      .+++|..+.+   ..  + .+.+.+++.+....  ...|++..+..+|++.+++++.        .+.+  ++++|+++|
T Consensus        27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~a  106 (396)
T PRK09257         27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGA  106 (396)
T ss_pred             CcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHH
Confidence            4578877743   21  2 36788887776542  2358877788999999999852        1233  788888999


Q ss_pred             HHHHHHHcc-ccCCCeEEecCCcceeeecccccccccccccccceeeeeeec--CCCCCCCHHHHHHHhcccccccCCce
Q psy5413         129 NLIAIMTHC-DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN--QKDGTFDLDEMEAKFSTADNIHCAST  205 (285)
Q Consensus       129 ~~~al~~~~-~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~i~~~~~~~~~~~  205 (285)
                      +..+++++. ..+||+|+++++++.......         ...|.+++.++.  .+++.+|+++++++++.    +..++
T Consensus       107 l~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~---------~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~----~~~~~  173 (396)
T PRK09257        107 LRVGADFLKRAFPDAKVWVSDPTWPNHRAIF---------EAAGLEVKTYPYYDAATKGLDFDAMLADLSQ----APAGD  173 (396)
T ss_pred             HHHHHHHHHHhCCCCeEEECCCCcccHHHHH---------HHcCCcEEEEeccccccCccCHHHHHHHHHh----CCCCC
Confidence            999987653 258999999998875543322         345889998886  23467899999999864    12245


Q ss_pred             EEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----------hcccC-CeE-EEecccccCc--
Q psy5413         206 SLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE-----------VCASV-DTV-MFCLSKGLGA--  270 (285)
Q Consensus       206 ~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----------~~~~~-dv~-~~s~sK~l~~--  270 (285)
                      +++++++|+||| |.+++.+++++|+++|++||+++|+||+|..+..           +.... .++ +.|+||.++.  
T Consensus       174 ~~~i~~~p~NPT-G~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~G  252 (396)
T PRK09257        174 VVLLHGCCHNPT-GADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYG  252 (396)
T ss_pred             EEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCcccc
Confidence            677778899999 9999999999999999999999999999873211           11112 344 8999998874  


Q ss_pred             ceeEEee
Q psy5413         271 PVGSILA  277 (285)
Q Consensus       271 p~gg~~~  277 (285)
                      .+.|+++
T Consensus       253 lRiG~~~  259 (396)
T PRK09257        253 ERVGALS  259 (396)
T ss_pred             ccceeEE
Confidence            6777765

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.80  E-value=2.5e-18  Score=137.22  Aligned_cols=158  Identities=26%  Similarity=0.317  Sum_probs=121.0

Q ss_pred             HHHHHHHHHhHc--CCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC
Q psy5413         103 CKELQEKAAKLA--GKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ  180 (285)
Q Consensus       103 ~~~l~~~la~~~--g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  180 (285)
                      ..++++.+++++  +.+.++++++|++|+..+++++. +++++|++.++.|.....  ...      ...|.++..++.+
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~-~~~~~v~~~~~~~~~~~~--~~~------~~~g~~~~~v~~~   72 (170)
T cd01494           2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALL-GPGDEVIVDANGHGSRYW--VAA------ELAGAKPVPVPVD   72 (170)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhC-CCCCEEEEeecccceehh--hHH------HhcCCEEEEeccC
Confidence            468999999999  77888999999999999999987 478888888877765541  122      2447788888765


Q ss_pred             CCCCCC--HHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-------h
Q psy5413         181 KDGTFD--LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-------A  251 (285)
Q Consensus       181 ~~~~~d--~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-------~  251 (285)
                      .+...+  .+.+++...      ..++++++++++++++ |...|   +++|.++|+++|+++|+|+++...       .
T Consensus        73 ~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~-g~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~  142 (170)
T cd01494          73 DAGYGGLDVAILEELKA------KPNVALIVITPNTTSG-GVLVP---LKEIRKIAKEYGILLLVDAASAGGASPAPGVL  142 (170)
T ss_pred             CCCccchhhhhhhhccc------cCceEEEEEecCcCCC-CeEcC---HHHHHHHHHHcCCEEEEecccccccccccccc
Confidence            443322  224444332      2388999999999998 88889   799999999999999999998811       1


Q ss_pred             hhcccCCeEEEecccccCcceeEEeecC
Q psy5413         252 EVCASVDTVMFCLSKGLGAPVGSILAGP  279 (285)
Q Consensus       252 ~~~~~~dv~~~s~sK~l~~p~gg~~~~~  279 (285)
                      ....++|+++.|++|+++++.+|+++.+
T Consensus       143 ~~~~~~d~~~~s~~K~~~~~~~G~l~~~  170 (170)
T cd01494         143 IPEGGADVVTFSLHKNLGGEGGGVVIVK  170 (170)
T ss_pred             cccccCCEEEEEcccccCCCceEEEEeC
Confidence            2235789999999999999888888653

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PLN02590 probable tyrosine decarboxylase

Probab=99.80  E-value=1.6e-18  Score=161.20  Aligned_cols=214  Identities=16%  Similarity=0.128  Sum_probs=149.5

Q ss_pred             CCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC--CCccCChhHHHHHHHHHhH----cCCC
Q psy5413          44 NLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD--DVYLEDPTCKELQEKAAKL----AGKE  117 (285)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~~~~~~l~~~la~~----~g~~  117 (285)
                      ....+++.+|.+|.+..+...            ....+.++..+.....+.  ..|...|...++|+.+.++    +|.+
T Consensus       119 ~~i~p~~~~~~hP~f~a~~~~------------~~~~~~~lgd~l~sa~n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp  186 (539)
T PLN02590        119 KKIMPGITHWQSPSYFAYYAS------------STSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQLP  186 (539)
T ss_pred             HHHhccCCcCCCCCeeEeccC------------CCcHHHHHHHHHHHhcccccCCcccCchhHHHHHHHHHHHHHHhCCC
Confidence            345677888988865555443            233556666665555543  3455678888888777665    4554


Q ss_pred             c---------EEEcCChHHHHHHHHHHccccC----C-----C-eEEecCCcceeeecccccccccccccccceeeeeee
Q psy5413         118 A---------AIFVPSGTMGNLIAIMTHCDRR----D-----S-EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT  178 (285)
Q Consensus       118 ~---------~~~~~~Gs~a~~~al~~~~~~~----g-----~-~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~  178 (285)
                      .         .+++++||+|+..++.++..+.    |     + .+++++.+|.++.++..+.      ......++.+|
T Consensus       187 ~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~il------Glg~~~vr~Vp  260 (539)
T PLN02590        187 DHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLIG------GIHEENIRLLK  260 (539)
T ss_pred             cccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHHc------CCCcccEEEEe
Confidence            2         5899999999999998876421    1     1 3566899999988766655      22233577777


Q ss_pred             cC--CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh----
Q psy5413         179 NQ--KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE----  252 (285)
Q Consensus       179 ~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~----  252 (285)
                      .+  +++.+|+++|+++|+++.+. +..+.+|+.+-.+-.+ |.+.|   |++|+++|++||+|+|+|+|+++...    
T Consensus       261 ~d~~~~~~md~~~L~~~I~~d~~~-g~~P~~VvaTaGTT~t-GaiDp---l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~  335 (539)
T PLN02590        261 TDSSTNYGMPPESLEEAISHDLAK-GFIPFFICATVGTTSS-AAVDP---LVPLGNIAKKYGIWLHVDAAYAGNACICPE  335 (539)
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHhc-CCCcEEEEEEeCCCCC-cccCC---HHHHHHHHHHhCCeEEEecchhhhhhcChh
Confidence            75  35689999999999874333 2345555555544445 99999   99999999999999999999983221    


Q ss_pred             ------hcccCCeEEEecccccCccee--EEeecCc
Q psy5413         253 ------VCASVDTVMFCLSKGLGAPVG--SILAGPE  280 (285)
Q Consensus       253 ------~~~~~dv~~~s~sK~l~~p~g--g~~~~~~  280 (285)
                            -.+.+|.+++++|||+..|.+  .+++.++
T Consensus       336 ~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~  371 (539)
T PLN02590        336 YRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDR  371 (539)
T ss_pred             hHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCH
Confidence                  125689999999999988544  4455544

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.80  E-value=1.1e-18  Score=157.63  Aligned_cols=160  Identities=17%  Similarity=0.163  Sum_probs=126.8

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|...+|++.++++.|.+.+++++||+.|+.+++. ++ ++|++|+++++.|..+.... ...      ...|.++..+
T Consensus        48 ~~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~-~l-~pGd~Vi~~~~~y~~t~~~~~~~~------~~~gi~v~~v  119 (380)
T PRK06176         48 GNPTRFALEELIADLEGGVKGFAFASGLAGIHAVFS-LF-QSGDHVLLGDDVYGGTFRLFDKVL------VKNGLSCTII  119 (380)
T ss_pred             CChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHH-Hc-CCCCEEEEcCCChhHHHHHHHHHH------HhcCeEEEEc
Confidence            467899999999999999999999999999987664 45 68999999877654332111 111      2347777666


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~  254 (285)
                      +.     .|++++++++++       ++++|++++|+||+ |.+.|   +++|+++|++||+++|+|+++...   ..+.
T Consensus       120 d~-----~d~e~l~~ai~~-------~t~lV~lesP~Npt-g~~~d---i~~I~~la~~~gi~vivD~t~a~~~~~~p~~  183 (380)
T PRK06176        120 DT-----SDLSQIKKAIKP-------NTKALYLETPSNPL-LKITD---LAQCASVAKDHGLLTIVDNTFATPYYQNPLL  183 (380)
T ss_pred             CC-----CCHHHHHHhcCc-------CceEEEEECCCCCC-ceecC---HHHHHHHHHHcCCEEEEECCccccccCCccc
Confidence            54     389999999987       79999999999999 89999   999999999999999999998732   2234


Q ss_pred             ccCCeEEEecccccCcc---eeEEeecC-ccc
Q psy5413         255 ASVDTVMFCLSKGLGAP---VGSILAGP-EEF  282 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~p---~gg~~~~~-~~~  282 (285)
                      .++|+++.|++|+++++   .||+++.+ +++
T Consensus       184 ~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~  215 (380)
T PRK06176        184 LGADIVVHSGTKYLGGHSDVVAGLVTTNNEAL  215 (380)
T ss_pred             cCCCEEEecCceeccCCccceeeEEEecHHHH
Confidence            68899999999999883   57877664 444

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.80  E-value=7.5e-19  Score=159.27  Aligned_cols=161  Identities=17%  Similarity=0.149  Sum_probs=127.7

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecc-cccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|...++++.+++++|.+..+.+++|+.|+..++. ++ ++||+|+++++.|..+... ....      ...|.+++.+
T Consensus        52 ~~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~-~l-~~Gd~Vlv~~~~y~~~~~~~~~~~------~~~G~~v~~v  123 (390)
T PRK08064         52 GNPTREALEDIIAELEGGTKGFAFASGMAAISTAFL-LL-SKGDHVLISEDVYGGTYRMITEVL------SRFGIEHTFV  123 (390)
T ss_pred             CChhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHH-Hh-CCCCEEEEccCccchHHHHHHHHH------HHcCCEEEEE
Confidence            568899999999999999888999999999998886 45 5899999988766543321 1111      2458888877


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---hhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---EVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---~~~  254 (285)
                      +..     |++++++++++       ++++|++++|+||+ |.+.|   +++|+++|+++|+++++|+++....   ...
T Consensus       124 ~~~-----d~~~l~~~l~~-------~tklV~l~~p~Npt-G~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~~~~~  187 (390)
T PRK08064        124 DMT-----NLEEVAQNIKP-------NTKLFYVETPSNPL-LKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLLQKPLD  187 (390)
T ss_pred             CCC-----CHHHHHHhcCC-------CceEEEEECCCCCC-cEecc---HHHHHHHHHHcCCEEEEECCCCcccccCchh
Confidence            752     78999999987       78999999999999 89999   9999999999999999999987321   233


Q ss_pred             ccCCeEEEecccccCcc---eeEEeec-Ccccc
Q psy5413         255 ASVDTVMFCLSKGLGAP---VGSILAG-PEEFI  283 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~p---~gg~~~~-~~~~i  283 (285)
                      .++|+++.|++|+++|+   ++|+++. +++++
T Consensus       188 ~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~  220 (390)
T PRK08064        188 LGADVVLHSATKFLAGHSDVLAGLAVVKDEELA  220 (390)
T ss_pred             hCCcEEEeecceeccCCccceeEEEEeCCHHHH
Confidence            47899999999999873   4565554 45554

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.80  E-value=8.8e-19  Score=159.86  Aligned_cols=202  Identities=15%  Similarity=0.061  Sum_probs=142.8

Q ss_pred             CeeeeeccCCcC-C-C----cHHHHHHHHhccc-C-CCCccCChhHHHHHHHHHhHcCC--------CcEE--EcCChHH
Q psy5413          66 IRTVDIRSDTIS-K-P----TMEMKNYMFNCEV-G-DDVYLEDPTCKELQEKAAKLAGK--------EAAI--FVPSGTM  127 (285)
Q Consensus        66 ~~~~~~~~~~~~-~-~----~~~v~~a~~~~~~-~-~~~y~~~~~~~~l~~~la~~~g~--------~~~~--~~~~Gs~  127 (285)
                      +..++|+.+.+. . +    .+.+.+++.+... + ...|++..+..+||+.+++++..        +.++  .+.+|++
T Consensus        29 ~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~  108 (404)
T PTZ00376         29 PSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTG  108 (404)
T ss_pred             cccEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcch
Confidence            355788777642 2 2    2344455433332 2 35688778899999999998621        1233  3778888


Q ss_pred             HHHHHHH---HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccC
Q psy5413         128 GNLIAIM---THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHC  202 (285)
Q Consensus       128 a~~~al~---~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~  202 (285)
                      |+..++.   +++ .+||+|++++++|.......         ...|.+++.++..  +++.+|++.+++++++.    .
T Consensus       109 al~~~~~~l~~~~-~~Gd~Vlv~~P~y~~~~~~~---------~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~----~  174 (404)
T PTZ00376        109 ALRLGFEFLKRFL-PAGTTVYVSNPTWPNHVNIF---------KSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTA----P  174 (404)
T ss_pred             HHHHHHHHHHHhc-CCCCEEEEcCCCchhHHHHH---------HHcCCceeeccccCcccCCcCHHHHHHHHHhC----C
Confidence            8887765   444 68999999998876554422         3448899988873  34678999999998641    1


Q ss_pred             CceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------------hhcccC-CeE-EEeccccc
Q psy5413         203 ASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------------EVCASV-DTV-MFCLSKGL  268 (285)
Q Consensus       203 ~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------------~~~~~~-dv~-~~s~sK~l  268 (285)
                      .+++++++++|+||| |.+++.+++++|+++|++||+++|+||+|..+.            .+.... .++ +.|+||.+
T Consensus       175 ~~~~~~~~~~p~NPT-G~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~  253 (404)
T PTZ00376        175 NGSVVLLHACAHNPT-GVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNM  253 (404)
T ss_pred             CCCEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcc
Confidence            246788889999999 999999999999999999999999999986221            111222 344 89999998


Q ss_pred             Cc--ceeEEe---ecCccc
Q psy5413         269 GA--PVGSIL---AGPEEF  282 (285)
Q Consensus       269 ~~--p~gg~~---~~~~~~  282 (285)
                      +.  .+.|++   ++++++
T Consensus       254 ~~~GlRvG~~~~~~~~~~~  272 (404)
T PTZ00376        254 GLYGERIGALHIVCANKEE  272 (404)
T ss_pred             cccccccceEEEEeCCHHH
Confidence            84  677776   566653

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.80  E-value=3.3e-18  Score=153.74  Aligned_cols=164  Identities=23%  Similarity=0.223  Sum_probs=126.0

Q ss_pred             CCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccc-ccccccccccc
Q psy5413          94 DDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGG-ASQTSVYSQIG  170 (285)
Q Consensus        94 ~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~~~~~~~  170 (285)
                      ...|+  .+|....|++.|+++.|.+.++.++||..|+..++.+++ ++||+|++.+..|+.+..... ..      ..+
T Consensus        46 ~~~Y~R~gnPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll-~~Gd~iv~~~~~Y~~t~~~~~~~l------~~~  118 (386)
T PF01053_consen   46 GYIYSRYGNPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALL-KPGDHIVASDDLYGGTYRLLEELL------PRF  118 (386)
T ss_dssp             SCSBTTTC-HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS--TTBEEEEESSSSHHHHHHHHHCH------HHT
T ss_pred             CcceeccccccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhc-ccCCceEecCCccCcchhhhhhhh------ccc
Confidence            34554  678899999999999999999999999999999999887 689999887665544433111 11      346


Q ss_pred             ceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC-CeEEEeCccCC
Q psy5413         171 RVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN-IPVHMDGARLP  249 (285)
Q Consensus       171 g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g-i~li~Dea~~~  249 (285)
                      |+++..+..     .|++++++++++       ++++|++|.|.||+ ..+.|   |++|+++||++| +++++|...++
T Consensus       119 gv~v~~~d~-----~d~~~l~~~l~~-------~t~~v~~EspsNP~-l~v~D---l~~i~~~a~~~g~~~~vVDnT~at  182 (386)
T PF01053_consen  119 GVEVTFVDP-----TDLEALEAALRP-------NTKLVFLESPSNPT-LEVPD---LEAIAKLAKEHGDILVVVDNTFAT  182 (386)
T ss_dssp             TSEEEEEST-----TSHHHHHHHHCT-------TEEEEEEESSBTTT-TB------HHHHHHHHHHTTT-EEEEECTTTH
T ss_pred             CcEEEEeCc-----hhHHHHHhhccc-------cceEEEEEcCCCcc-ccccc---HHHHHHHHHHhCCceEEeeccccc
Confidence            888777654     389999999998       89999999999999 99999   999999999998 99999999873


Q ss_pred             ---hhhhcccCCeEEEecccccCc---ceeEEeecCc
Q psy5413         250 ---LAEVCASVDTVMFCLSKGLGA---PVGSILAGPE  280 (285)
Q Consensus       250 ---~~~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~  280 (285)
                         ...+..++|+++.|++|.++|   -+||+++.+.
T Consensus       183 p~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~  219 (386)
T PF01053_consen  183 PYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNG  219 (386)
T ss_dssp             TTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESS
T ss_pred             eeeeccCcCCceEEEeeccccccCCcceeeEEEEECc
Confidence               234556899999999999998   5677777543

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK07049 methionine gamma-lyase; Validated

Probab=99.80  E-value=9.8e-19  Score=160.02  Aligned_cols=172  Identities=16%  Similarity=0.167  Sum_probs=129.9

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|....|++.|+++.|.+.+++++||++|+..++.+++ ++||+|+++++.|..+.... ...      ...|++++.+
T Consensus        81 ~~Pt~~~Le~~lA~leg~~~~iv~~sG~~Ai~~~l~al~-~~Gd~Vv~~~p~Y~~~~~~~~~~l------~~~Gi~~v~~  153 (427)
T PRK07049         81 NHPNSEIVEDRLAVYEGAESAALFSSGMSAIATTLLAFV-RPGDVILHSQPLYGGTETLLAKTF------RNFGVGAVGF  153 (427)
T ss_pred             CCcCHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHh-CCCCEEEEcCCCcccHHHHHHHHH------HhcCcEEEEE
Confidence            467789999999999999999999999999999998877 69999999887765443221 111      2357776666


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH---cCCeEEEeCccCChh---
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE---HNIPVHMDGARLPLA---  251 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~---~gi~li~Dea~~~~~---  251 (285)
                      +.    ..|++++++++.+...  ..++++|++++|+||+ |.+++.+.+.+|++.|++   +++++++||++.+..   
T Consensus       154 ~~----~~d~~~l~~~l~~~~~--~~~tklv~lesP~NPt-g~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~  226 (427)
T PRK07049        154 AD----GLSEAAIGAAAEAAAA--KGRVSLILIETPANPT-NSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQK  226 (427)
T ss_pred             eC----CCCHHHHHHHHHhhcc--CCCceEEEEECCCCCC-CcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCC
Confidence            53    2477888877753110  1278999999999999 999996666666665443   799999999976321   


Q ss_pred             hhcccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413         252 EVCASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ  284 (285)
Q Consensus       252 ~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~  284 (285)
                      .+..+.|+++.|+||+++|   .++|++++++++++
T Consensus       227 pl~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~  262 (427)
T PRK07049        227 PLEHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIR  262 (427)
T ss_pred             ccccCCCEEEEcCceeecCCCCcEEEEEECCHHHHH
Confidence            2234679999999999985   68999998887654

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.80  E-value=7.8e-19  Score=157.55  Aligned_cols=160  Identities=16%  Similarity=0.135  Sum_probs=121.9

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT  178 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~  178 (285)
                      .+|...+|++.++++.|.+.++.++||++|+..++. ++ ++||+||++...+..........    . ...+..   + 
T Consensus        52 ~~p~~~~le~~lA~leg~~~~v~~~sG~aAi~~~l~-~l-~~GD~VI~~~~~yg~~~~~~~~~----~-~~~~~~---~-  120 (364)
T PRK07269         52 KNPTRAKLEETLAAIESADYALATSSGMSAIVLAFS-VF-PVGSKVVAVRDLYGGSFRWFNQQ----E-KEGRFH---F-  120 (364)
T ss_pred             CCccHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHH-Hh-CCCCEEEEecCCcCchHHHHHHH----H-hcCcEE---E-
Confidence            578899999999999999999999999999999995 45 69999998766543221100000    0 001111   1 


Q ss_pred             cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhcc
Q psy5413         179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVCA  255 (285)
Q Consensus       179 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~~  255 (285)
                         .+..|+++++++|++       +|++|++++|+||+ |.+.+   +++|+++|+++|+++++|+++...   ..+..
T Consensus       121 ---~~~~d~~~l~~~i~~-------~TklV~lesP~NPt-g~~~d---i~~I~~la~~~gi~vvvD~t~~~~~~~~pl~~  186 (364)
T PRK07269        121 ---TYANTEEELIAAIEE-------DTDIVYIETPTNPL-MVEFD---IEKVAKLAHAKGAKVIVDNTFYSPIYQRPIEL  186 (364)
T ss_pred             ---EecCCHHHHHHhcCc-------CceEEEEECCCCCC-CeeeC---HHHHHHHHHHcCCEEEEECCCcccccCCchhh
Confidence               123489999999987       89999999999999 89998   999999999999999999997622   23446


Q ss_pred             cCCeEEEecccccCc---ceeEEeec-Ccccc
Q psy5413         256 SVDTVMFCLSKGLGA---PVGSILAG-PEEFI  283 (285)
Q Consensus       256 ~~dv~~~s~sK~l~~---p~gg~~~~-~~~~i  283 (285)
                      ++|+++.|++|++++   ..||++++ ++++.
T Consensus       187 gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~  218 (364)
T PRK07269        187 GADIVLHSATKYLSGHNDVLAGVVVTNDLELY  218 (364)
T ss_pred             CCcEEEecCceeccCCCcccceEEEeCcHHHH
Confidence            899999999999987   35777665 45543

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.80  E-value=1.4e-18  Score=158.78  Aligned_cols=196  Identities=13%  Similarity=0.106  Sum_probs=137.1

Q ss_pred             CeeeeeccCCcCC-CcHHHHHHHHhcccC------CCCccCChhHHHHHHHHHhHc------CC--CcEEEcCChHHHHH
Q psy5413          66 IRTVDIRSDTISK-PTMEMKNYMFNCEVG------DDVYLEDPTCKELQEKAAKLA------GK--EAAIFVPSGTMGNL  130 (285)
Q Consensus        66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~------~~~y~~~~~~~~l~~~la~~~------g~--~~~~~~~~Gs~a~~  130 (285)
                      ..+++|..+.+.. +++.+.+++.+....      ...|++.+...+|++.+++++      +.  +.+++++|+.+++.
T Consensus        34 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~  113 (409)
T PRK07590         34 AKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTG  113 (409)
T ss_pred             CceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHH
Confidence            4578888777665 456788887765442      246766777889999999975      22  34578888888887


Q ss_pred             HHHHHccccCCCeEEecCCcceeeeccccccccccccccccee-----------eeeeecCCCCCCCHHHHHHHhccccc
Q psy5413         131 IAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVL-----------MRGVTNQKDGTFDLDEMEAKFSTADN  199 (285)
Q Consensus       131 ~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~-----------~~~~~~~~~~~~d~~~l~~~i~~~~~  199 (285)
                      ..+ .++ .+||+|++.++++........         ..|.+           ++.++.++++...++ ++   ++   
T Consensus       114 ~l~-~~~-~~gd~V~v~~P~Y~~~~~~~~---------~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d-~~---~~---  175 (409)
T PRK07590        114 NIL-DIF-GPDNTIAVTDPVYPVYVDTNV---------MAGRTGEANEDGRYSGIVYLPCTAENNFVPE-LP---EE---  175 (409)
T ss_pred             HHH-Hhc-CCCCEEEEeCCCCcchHHHHH---------HcCCcccccccccccceeEeecccccCCccc-Cc---cc---
Confidence            754 445 589999998888755433222         22443           677776433212111 11   12   


Q ss_pred             ccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc--cc-CC-eE-EEecccc
Q psy5413         200 IHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC--AS-VD-TV-MFCLSKG  267 (285)
Q Consensus       200 ~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~--~~-~d-v~-~~s~sK~  267 (285)
                          ++++|++++|+||| |.+++.+++++|+++|++||++||+||+|..+.       .+.  .. .+ ++ +.|+||.
T Consensus       176 ----~~k~i~l~nP~NPT-G~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~  250 (409)
T PRK07590        176 ----KVDIIYLCFPNNPT-GTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKT  250 (409)
T ss_pred             ----CceEEEEeCCCCCc-CCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccc
Confidence                78999999999999 999999999999999999999999999987221       111  11 12 34 8999998


Q ss_pred             cC--cceeEEeecCccccc
Q psy5413         268 LG--APVGSILAGPEEFIQ  284 (285)
Q Consensus       268 l~--~p~gg~~~~~~~~i~  284 (285)
                      ++  |.+.|++++++++++
T Consensus       251 ~~~pGlRiG~~i~~~~li~  269 (409)
T PRK07590        251 AGFTGTRCAYTVVPKELKG  269 (409)
T ss_pred             cCCcCceeEEEEcCHHHhh
Confidence            85  378889988887764

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.79  E-value=2.4e-18  Score=157.61  Aligned_cols=213  Identities=12%  Similarity=0.170  Sum_probs=138.2

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCCC--C--ccCChhHHHHHHHHHhHcCC--CcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGDD--V--YLEDPTCKELQEKAAKLAGK--EAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~--~--y~~~~~~~~l~~~la~~~g~--~~~~~~~~Gs~a~~~al~  134 (285)
                      |++++||.++    +.++.+|++.+++.+++....  .  +..++...++.+.+++..+.  +.++|+++||+|++.|++
T Consensus        44 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Alk  123 (427)
T TIGR00508        44 GRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVEVALK  123 (427)
T ss_pred             CCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHH
Confidence            6778888665    567799999999998776311  1  12456688899999998743  578999999999999999


Q ss_pred             Hcccc------CCC-eEE-ecCCcceeeecccccccc-cccccccc-----eeeeeeecCCC----CCCCHHHHHHHhcc
Q psy5413         135 THCDR------RDS-EII-VGDCSHIMLWEQGGASQT-SVYSQIGR-----VLMRGVTNQKD----GTFDLDEMEAKFST  196 (285)
Q Consensus       135 ~~~~~------~g~-~vi-~~~~~h~~~~~~~~~~~~-~~~~~~~g-----~~~~~~~~~~~----~~~d~~~l~~~i~~  196 (285)
                      ++...      +++ +|| ....||+.+.....+... ..+...++     ...+..|....    ...|++++++.+..
T Consensus       124 lAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~  203 (427)
T TIGR00508       124 MALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMEL  203 (427)
T ss_pred             HHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHh
Confidence            98743      233 344 467889876443333210 11111111     11111121100    11257788888865


Q ss_pred             cccccCCceEEEEEecc-cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----hcccCCeE--EEeccccc
Q psy5413         197 ADNIHCASTSLVCVENT-HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE-----VCASVDTV--MFCLSKGL  268 (285)
Q Consensus       197 ~~~~~~~~~~~v~i~~~-~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----~~~~~dv~--~~s~sK~l  268 (285)
                          +.+++++|++|+. ++.+|....+.+++++|+++|++||+++|+||+++++..     ..+..++.  +.+++|.+
T Consensus       204 ----~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~~gK~l  279 (427)
T TIGR00508       204 ----HSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPDILCVGKAL  279 (427)
T ss_pred             ----cCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCCEEEechhh
Confidence                3347999999996 777655567899999999999999999999999874311     22222322  44578998


Q ss_pred             Cc---ceeEEeecCccc
Q psy5413         269 GA---PVGSILAGPEEF  282 (285)
Q Consensus       269 ~~---p~gg~~~~~~~~  282 (285)
                      ++   |.++ ++.++++
T Consensus       280 ~gG~~p~~a-~~~~~~~  295 (427)
T TIGR00508       280 TGGYMTLSA-TVTTDKV  295 (427)
T ss_pred             hcCcccceE-EEEcHHH
Confidence            76   4554 4444443

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.79  E-value=1e-18  Score=160.42  Aligned_cols=220  Identities=13%  Similarity=0.066  Sum_probs=134.7

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhc--ccC--C-CCccCCh
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNC--EVG--D-DVYLEDP  101 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~--~~~--~-~~y~~~~  101 (285)
                      |..+.++.+.++|+..++.+++..+.|+..                  +.++.||++.+|+.++  ...  + ..+ .++
T Consensus        41 p~~~~~a~G~~l~D~dG~~ylD~~sg~~~~------------------~lGh~~p~i~~Ai~~q~~~~~l~~~~~~-~~~  101 (464)
T TIGR00699        41 LADYEKSRGNYLVDVDGNRLLDLYSQISSI------------------PIGYNNPALLKAAQSPEMATTLINRPAL-GNF  101 (464)
T ss_pred             ceEEEecccCEEEeCCCCEEEEccCCHhhh------------------cCCCCCHHHHHHHHHHHHHHhhcccccC-CcH
Confidence            444555566666655444444443333331                  4477999999999974  222  1 123 344


Q ss_pred             hHHHHHHHHHh----Hc--CCCcEEEcCChHHHHHHHHHHcccc-------------------------CC--C-eEEe-
Q psy5413         102 TCKELQEKAAK----LA--GKEAAIFVPSGTMGNLIAIMTHCDR-------------------------RD--S-EIIV-  146 (285)
Q Consensus       102 ~~~~l~~~la~----~~--g~~~~~~~~~Gs~a~~~al~~~~~~-------------------------~g--~-~vi~-  146 (285)
                      ...++.+.+++    +.  +.+.++|++|||+|++.|++++...                         +|  + +||. 
T Consensus       102 ~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~  181 (464)
T TIGR00699       102 PSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSF  181 (464)
T ss_pred             HHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEE
Confidence            56677777654    44  3467899999999999999998532                         11  1 3444 


Q ss_pred             cCCcceeeecccccccccccccc--cceeeeeeecCC-C-------------CCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413         147 GDCSHIMLWEQGGASQTSVYSQI--GRVLMRGVTNQK-D-------------GTFDLDEMEAKFSTADNIHCASTSLVCV  210 (285)
Q Consensus       147 ~~~~h~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~-~-------------~~~d~~~l~~~i~~~~~~~~~~~~~v~i  210 (285)
                      ...||+.+..+..+...+.+...  .......+|.+. .             ...+++++++++++    +.+++++|++
T Consensus       182 ~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~----~~~~iAAvI~  257 (464)
T TIGR00699       182 KGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKK----WHKPVAAIIV  257 (464)
T ss_pred             CCCcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHh----cCCcEEEEEE
Confidence            67889887543332211111111  001111222211 0             00246677788864    3447999999


Q ss_pred             ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCCe---E-EEecccccC
Q psy5413         211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVDT---V-MFCLSKGLG  269 (285)
Q Consensus       211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~dv---~-~~s~sK~l~  269 (285)
                      |++++..|....|.++|++|+++|++||+++|+||+++++.     ...++.++   - +.+++|+++
T Consensus       258 EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~gK~lg  325 (464)
T TIGR00699       258 EPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQ  325 (464)
T ss_pred             eCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEehhhhc
Confidence            99999884455689999999999999999999999988432     23333333   1 467789995

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.79  E-value=1.5e-18  Score=155.37  Aligned_cols=165  Identities=20%  Similarity=0.165  Sum_probs=128.3

Q ss_pred             CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeee
Q psy5413          96 VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMR  175 (285)
Q Consensus        96 ~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~  175 (285)
                      .|+..+...++++.+++++|.+.+++++||++|+..++.++..++|++|+++...|..+....         ...|.+++
T Consensus        13 ~~~~~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~---------~~~g~~~~   83 (352)
T cd00616          13 WLTLGPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAI---------LLLGATPV   83 (352)
T ss_pred             CccCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHH---------HHcCCeEE
Confidence            345567899999999999999888999999999999999874368999999888876553311         23477888


Q ss_pred             eeecCC-CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhh-
Q psy5413         176 GVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAE-  252 (285)
Q Consensus       176 ~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~-  252 (285)
                      .++.++ ++.+|++++++++++       ++++|++++++    |.+.|   +++|.++|+++|+++|+|++|+ +... 
T Consensus        84 ~~~~~~~~~~~d~~~l~~~i~~-------~~~~v~~~~~~----G~~~~---~~~i~~l~~~~~i~li~D~a~~~g~~~~  149 (352)
T cd00616          84 FVDIDPDTYNIDPELIEAAITP-------RTKAIIPVHLY----GNPAD---MDAIMAIAKRHGLPVIEDAAQALGATYK  149 (352)
T ss_pred             EEecCCCcCCcCHHHHHHhcCc-------CCeEEEEECCC----CCcCC---HHHHHHHHHHcCCeEEEECCCCCCCeEC
Confidence            887765 677899999999976       78999987654    78888   9999999999999999999987 2211 


Q ss_pred             ---hcccCCeEEEecc--cccCcceeEEeecC-cccc
Q psy5413         253 ---VCASVDTVMFCLS--KGLGAPVGSILAGP-EEFI  283 (285)
Q Consensus       253 ---~~~~~dv~~~s~s--K~l~~p~gg~~~~~-~~~i  283 (285)
                         +....|+.++|++  |+++++.||+++.+ ++++
T Consensus       150 ~~~~~~~~d~~~~S~~~~K~~~~~~gg~~~~~~~~~~  186 (352)
T cd00616         150 GRKVGTFGDAGAFSFHPTKNLTTGEGGAVVTNDEELA  186 (352)
T ss_pred             CEEcccCcceeEEcCCCCCCCcccCceEEEECCHHHH
Confidence               1123577777766  99977777767654 4543

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.79  E-value=3.3e-18  Score=155.96  Aligned_cols=186  Identities=19%  Similarity=0.185  Sum_probs=131.4

Q ss_pred             CcHHHHHHHHhcccC--------CCCccCChhHHHHHH----HHHhHcCCCcE-EEcCChHHHHHHHHHHccccCCCeEE
Q psy5413          79 PTMEMKNYMFNCEVG--------DDVYLEDPTCKELQE----KAAKLAGKEAA-IFVPSGTMGNLIAIMTHCDRRDSEII  145 (285)
Q Consensus        79 ~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~~----~la~~~g~~~~-~~~~~Gs~a~~~al~~~~~~~g~~vi  145 (285)
                      .+|+|++++.+....        ...|...+...++++    .+++++|.+.. +++++|++|+..++.+++ ++||+|+
T Consensus        31 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~sgt~a~~~~l~~l~-~~Gd~Vl  109 (402)
T cd00378          31 TSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQPHSGSQANLAVYFALL-EPGDTIM  109 (402)
T ss_pred             CCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceeeecCCcHHHHHHHHHHhc-CCCCEEE
Confidence            488999998765421        223444444555554    46788888765 666789999999999987 6999999


Q ss_pred             ecCCcceeeeccccc--ccccccccccceeeeeeecCC---CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCee
Q psy5413         146 VGDCSHIMLWEQGGA--SQTSVYSQIGRVLMRGVTNQK---DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT  220 (285)
Q Consensus       146 ~~~~~h~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~---~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~  220 (285)
                      ++++.|.........  .      ...|.++..++...   ++.+|++++++++.+.      ++++|+++++++   |.
T Consensus       110 ~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~------~~~~v~~~~~~~---~~  174 (402)
T cd00378         110 GLDLSHGGHLTHGSFTKV------SASGKLFESVPYGVDPETGLIDYDALEKMALEF------KPKLIVAGASAY---PR  174 (402)
T ss_pred             EecCccCccccccccccc------cccceeEEEecCCcCcccCCcCHHHHHHHHHhC------CCCEEEecCccc---CC
Confidence            988776433221110  1      23465555554322   5779999999999642      678898888765   45


Q ss_pred             eCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecCc-ccc
Q psy5413         221 VLPMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGPE-EFI  283 (285)
Q Consensus       221 ~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~-~~i  283 (285)
                      ..+   +++|+++|++||+++|+|++|. +..      ....++|+++.|+||+++||+||+++.++ +++
T Consensus       175 ~~~---~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~~~dv~~~s~sK~l~G~~gg~i~~~~~~~~  242 (402)
T cd00378         175 PID---FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGLILTRKGELA  242 (402)
T ss_pred             CcC---HHHHHHHHHhcCCEEEEEccchhhhhhcccCCCcccCCcEEEeccccCCCCCCceEEEeccHHHH
Confidence            667   9999999999999999999974 221      11126788899999999888888888766 654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.79  E-value=1.6e-18  Score=156.27  Aligned_cols=190  Identities=16%  Similarity=0.137  Sum_probs=141.0

Q ss_pred             CCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc----EEEcCChHHHHHHHHHHccccCCCeEEecCCcce
Q psy5413          77 SKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA----AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHI  152 (285)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~----~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~  152 (285)
                      ....+.+++++.+.. ++..........++++.+++++|.+.    .+++.|||++++.++..+. .+|+++++....+.
T Consensus        14 ~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~-~~~~~vlv~~~~~~   91 (368)
T PRK13479         14 LTTSRTVREAMLRDW-GSWDDDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLV-PRDGKVLVPDNGAY   91 (368)
T ss_pred             CCCCHHHHHHhCCCC-CCCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhcc-CCCCeEEEEeCCch
Confidence            557889999987764 33221112468899999999998742    4689999999999999987 57777776544322


Q ss_pred             eeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHH
Q psy5413         153 MLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKA  232 (285)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~  232 (285)
                      ... ....+      +..|.+++.++.++++..|+++++++++++     .++++|.+++++|++ |.+.|   +++|.+
T Consensus        92 ~~~-~~~~~------~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~-----~~~~~v~~~~~~~~t-G~~~~---~~~i~~  155 (368)
T PRK13479         92 GAR-IAQIA------EYLGIAHVVLDTGEDEPPDAAEVEAALAAD-----PRITHVALVHCETTT-GILNP---LDEIAA  155 (368)
T ss_pred             HHH-HHHHH------HHcCCcEEEEECCCCCCCCHHHHHHHHHhC-----CCCcEEEEEcccCcc-ccccC---HHHHHH
Confidence            111 01122      345888888888666778999999998751     156789999999999 89999   899999


Q ss_pred             HHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCccee-EEeecCccccc
Q psy5413         233 RCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPVG-SILAGPEEFIQ  284 (285)
Q Consensus       233 la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~g-g~~~~~~~~i~  284 (285)
                      +|+++|+++|+|+++. +   +.....++|+++.+++||+++|.| |+++.++++++
T Consensus       156 l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~  212 (368)
T PRK13479        156 VAKRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPGFGFVIARRSELE  212 (368)
T ss_pred             HHHHcCCEEEEEcccccCCccccccccCceEEEecCccccccCCCceEEEECHHHHH
Confidence            9999999999998866 2   121234789999999999977544 88888776653

>PRK08354 putative aminotransferase; Provisional

Probab=99.79  E-value=2.5e-18  Score=151.52  Aligned_cols=182  Identities=15%  Similarity=0.116  Sum_probs=134.8

Q ss_pred             eeeeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEe
Q psy5413          67 RTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIV  146 (285)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~  146 (285)
                      .+++|..+....+++.+.+++.+.......|.   ....+++.++++.|. .+++++|+++++..++.. + .+|+.|++
T Consensus         9 ~~i~l~~~~np~~p~~~~~a~~~~~~~~~~yp---~~~~l~~~ia~~~~~-~I~vt~G~~~al~~~~~~-~-~~gd~vlv   82 (311)
T PRK08354          9 GLIDFSASVNPYPPEWLDEMFERAKEISGRYT---YYEWLEEEFSKLFGE-PIVITAGITEALYLIGIL-A-LRDRKVII   82 (311)
T ss_pred             ceeEecCCCCCCCCHHHHHHHHHHHHHhhcCC---ChHHHHHHHHHHHCC-CEEECCCHHHHHHHHHHh-h-CCCCeEEE
Confidence            46888876334456888888876543333443   357899999999984 578888899998877754 4 37999999


Q ss_pred             cCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHH
Q psy5413         147 GDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW  226 (285)
Q Consensus       147 ~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~  226 (285)
                      ++++|.......         +..|.+++.++      +|++.+++.+++        ++++++++|+||| |.+++.++
T Consensus        83 ~~P~y~~~~~~~---------~~~g~~~~~~~------~d~~~l~~~~~~--------~~~vi~~~P~NPT-G~~~~~~~  138 (311)
T PRK08354         83 PRHTYGEYERVA---------RFFAARIIKGP------NDPEKLEELVER--------NSVVFFCNPNNPD-GKFYNFKE  138 (311)
T ss_pred             eCCCcHHHHHHH---------HHcCCEEeecC------CCHHHHHHhhcC--------CCEEEEecCCCCC-CCccCHHH
Confidence            988876554422         23477776654      478889888753        4678899999999 99999999


Q ss_pred             HHHHHHHHHHcCCeEEEeCccCChhhh---cccCC-eEEEecccccCc--ceeEEeec
Q psy5413         227 LRELKARCQEHNIPVHMDGARLPLAEV---CASVD-TVMFCLSKGLGA--PVGSILAG  278 (285)
Q Consensus       227 l~~i~~la~~~gi~li~Dea~~~~~~~---~~~~d-v~~~s~sK~l~~--p~gg~~~~  278 (285)
                      +++|+++|++||+++|+||+|..+..-   ..... +++.|+||.++.  .+.|++++
T Consensus       139 l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~~l~GlRiG~~v~  196 (311)
T PRK08354        139 LKPLLDAVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSYGLPGIRVGYVKG  196 (311)
T ss_pred             HHHHHHHhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhcCCccceeeeeee
Confidence            999999999999999999998743211   11222 448999998874  56677765

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.79  E-value=2.5e-18  Score=158.28  Aligned_cols=205  Identities=12%  Similarity=0.110  Sum_probs=147.4

Q ss_pred             eeeeeccCCcCCCcHHHHHHHHhccc-------------CCCCccCChhHHHHHHHHHhHcCC----------CcEEEcC
Q psy5413          67 RTVDIRSDTISKPTMEMKNYMFNCEV-------------GDDVYLEDPTCKELQEKAAKLAGK----------EAAIFVP  123 (285)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~a~~~~~~-------------~~~~y~~~~~~~~l~~~la~~~g~----------~~~~~~~  123 (285)
                      .+|+++...-...+..+.+.+.+...             ....|....+..+|++.++++++.          +.+++++
T Consensus        48 g~i~l~~aeN~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~  127 (447)
T PLN02607         48 GVIQMGLAENQVSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTA  127 (447)
T ss_pred             ceEEEechhhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcC
Confidence            47888765556678888888876432             012344445678899999988641          2357888


Q ss_pred             ChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhccccccc
Q psy5413         124 SGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIH  201 (285)
Q Consensus       124 ~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~  201 (285)
                      |+++|++.++.+++ .+||.|+++.++|........        ...|++++.++.++  .+.+|++++++++++. ...
T Consensus       128 G~t~al~~l~~~l~-~pGD~Vlv~~P~Y~~f~~~~~--------~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a-~~~  197 (447)
T PLN02607        128 GATAANELLTFILA-DPGDALLVPTPYYPGFDRDLR--------WRTGVKIVPIHCDSSNNFQVTPQALEAAYQEA-EAA  197 (447)
T ss_pred             ChHHHHHHHHHHhC-CCCCEEEEcCCCCcchHHHHH--------hcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHH-HHh
Confidence            88999999988877 699999999888754432111        12478888887643  3458999999998652 112


Q ss_pred             CCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC----------hhhhcc-----c-CC--eEEEe
Q psy5413         202 CASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP----------LAEVCA-----S-VD--TVMFC  263 (285)
Q Consensus       202 ~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~----------~~~~~~-----~-~d--v~~~s  263 (285)
                      +.++++|++++|+||+ |.+++.+.+++|.++|++||+++|+||+|..          ...+..     . .+  +++.|
T Consensus       198 ~~~vk~lll~nP~NPt-G~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s  276 (447)
T PLN02607        198 NIRVRGVLITNPSNPL-GATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYS  276 (447)
T ss_pred             CCCeeEEEEeCCCCCc-CcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEc
Confidence            4478999999999999 9999999999999999999999999999872          111111     1 12  33899


Q ss_pred             cccccCc--ceeEEeec-Cccc
Q psy5413         264 LSKGLGA--PVGSILAG-PEEF  282 (285)
Q Consensus       264 ~sK~l~~--p~gg~~~~-~~~~  282 (285)
                      +||.+|.  .+.|++++ ++++
T Consensus       277 ~SK~fg~~GlRvG~ivs~n~~l  298 (447)
T PLN02607        277 LSKDLGLPGFRVGTIYSYNDKV  298 (447)
T ss_pred             chhcCCCCcceEEEEEEcCHHH
Confidence            9998864  67777776 4444

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.79  E-value=2.1e-18  Score=154.67  Aligned_cols=195  Identities=11%  Similarity=0.089  Sum_probs=141.1

Q ss_pred             eeeeeccCC-cCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCCe
Q psy5413          67 RTVDIRSDT-ISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDSE  143 (285)
Q Consensus        67 ~~~~~~~~~-~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~~  143 (285)
                      .+++|..+. +..+++.+.+++.+.......|. ++...+|++.++++++.+  .+++++|+++++..+++++  .+ +.
T Consensus        20 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~Y~-~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~--~~-~~   95 (354)
T PRK06358         20 MILDFSANINPLGVPESLKQAITENLDKLVEYP-DPDYLELRKRIASFEQLDLENVILGNGATELIFNIVKVT--KP-KK   95 (354)
T ss_pred             ceEEecCCCCCCCCCHHHHHHHHHHHHhhhcCC-CccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh--CC-Cc
Confidence            468887654 44467789999887654334564 455789999999998764  4688999999999998874  34 46


Q ss_pred             EEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeee
Q psy5413         144 IIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTV  221 (285)
Q Consensus       144 vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~  221 (285)
                      |+++.+++.....   ..      ...|.+++.++.+.+  +.+| +++++.+..       ++++|++++|+||| |.+
T Consensus        96 v~i~~P~y~~~~~---~~------~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~-------~~~~v~~~~P~NPt-G~~  157 (354)
T PRK06358         96 VLILAPTFAEYER---AL------KAFDAEIEYAELTEETNFAAN-EIVLEEIKE-------EIDLVFLCNPNNPT-GQL  157 (354)
T ss_pred             EEEecCChHHHHH---HH------HHcCCeeEEEeCccccCCCcc-HHHHHhhcc-------CCCEEEEeCCCCCC-CCc
Confidence            7787776543322   11      244788888886432  4577 666666655       68899999999999 999


Q ss_pred             CCHHHHHHHHHHHHHcCCeEEEeCccCChh---------hhcccC-CeE-EEecccccCc--ceeEEeec-Ccccc
Q psy5413         222 LPMQWLRELKARCQEHNIPVHMDGARLPLA---------EVCASV-DTV-MFCLSKGLGA--PVGSILAG-PEEFI  283 (285)
Q Consensus       222 ~~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~~~~-dv~-~~s~sK~l~~--p~gg~~~~-~~~~i  283 (285)
                      ++.+.+++|+++|++||+++|+||+|..+.         ...... .++ +.|+||.++.  .+.|+++. +++++
T Consensus       158 ~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~  233 (354)
T PRK06358        158 ISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLA  233 (354)
T ss_pred             cCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHH
Confidence            999999999999999999999999986211         111222 344 8999999873  67777775 45554

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.79  E-value=1.9e-18  Score=156.34  Aligned_cols=179  Identities=18%  Similarity=0.149  Sum_probs=133.8

Q ss_pred             HHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccccc
Q psy5413          81 MEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGA  160 (285)
Q Consensus        81 ~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~  160 (285)
                      ++-.+++.+.+.... +..++...+||+.+++++|.+.+++++||++|+.+++.++..++||+||++...|..+....  
T Consensus        14 ~~e~~~~~~~l~~~~-~~~g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~--   90 (379)
T PRK11658         14 DEELAAVKEVLRSGW-ITTGPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMI--   90 (379)
T ss_pred             HHHHHHHHHHHHcCC-ccCCHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHH--
Confidence            344556555443322 23467799999999999999999999999999999999873368999999988876553321  


Q ss_pred             ccccccccccceeeeeeecCCC-CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCC
Q psy5413         161 SQTSVYSQIGRVLMRGVTNQKD-GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNI  239 (285)
Q Consensus       161 ~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi  239 (285)
                             ...|.+++.++.+++ +.+|++++++++++       ++++|+..++   + |...+   +++|+++|++||+
T Consensus        91 -------~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~-------~tkav~~~~~---~-G~~~d---~~~i~~~a~~~gi  149 (379)
T PRK11658         91 -------VLLGATPVMVDVDRDTLMVTPEAIEAAITP-------RTKAIIPVHY---A-GAPAD---LDAIRAIGERYGI  149 (379)
T ss_pred             -------HHcCCEEEEEecCCCcCCcCHHHHHHhccc-------CCeEEEEeCC---C-CCcCC---HHHHHHHHHHcCC
Confidence                   234888888887543 46899999999987       7888885544   4 88888   9999999999999


Q ss_pred             eEEEeCccC-Chhh----h-cccCCeEEEecccccCcceeEEeecC-cccc
Q psy5413         240 PVHMDGARL-PLAE----V-CASVDTVMFCLSKGLGAPVGSILAGP-EEFI  283 (285)
Q Consensus       240 ~li~Dea~~-~~~~----~-~~~~dv~~~s~sK~l~~p~gg~~~~~-~~~i  283 (285)
                      ++|+|++|+ +...    . ..+.+++.++.+|.++++.||+++++ ++++
T Consensus       150 ~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~GG~v~~~~~~~~  200 (379)
T PRK11658        150 PVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIKNITCAEGGLVVTDDDELA  200 (379)
T ss_pred             eEEEECCCccCCeECCeecCCCCCEEEeCCCCCcCcccCceEEEECCHHHH
Confidence            999999987 2211    1 12334556667788888778877764 5654

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.79  E-value=2.2e-18  Score=154.28  Aligned_cols=187  Identities=13%  Similarity=0.161  Sum_probs=138.7

Q ss_pred             CCCcHHHHHHHHhcccCCC--CccCChhHHHHHHHHHhHcCCCc----EEEcCChHHHHHHHHHHccccCCCeEEe-cCC
Q psy5413          77 SKPTMEMKNYMFNCEVGDD--VYLEDPTCKELQEKAAKLAGKEA----AIFVPSGTMGNLIAIMTHCDRRDSEIIV-GDC  149 (285)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~--~y~~~~~~~~l~~~la~~~g~~~----~~~~~~Gs~a~~~al~~~~~~~g~~vi~-~~~  149 (285)
                      ....+.+++++.+. .++.  .|  .+...++++.+++++|.+.    ++++.|||+++..++..++ .+++++++ .+.
T Consensus         8 ~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~-~~~~~vi~~~~~   83 (355)
T TIGR03301         8 LSTSATVRDAMLVD-WCHWDSEF--NDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV-PRDGKLLVLING   83 (355)
T ss_pred             CCCCHHHHHHhhhh-ccCCCHHH--HHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc-CCCCeEEEECCC
Confidence            44688999998772 2232  23  3668899999999999753    4688999999999999987 46666554 445


Q ss_pred             cceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHH
Q psy5413         150 SHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRE  229 (285)
Q Consensus       150 ~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~  229 (285)
                      +|....  ...+      ...|.+++.++.++++.+|++++++.++++     .++++|++.++++++ |.+.|   +++
T Consensus        84 ~~~~~~--~~~a------~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~-----~~~~~v~~~~~~~~~-G~~~~---~~~  146 (355)
T TIGR03301        84 AYGERL--AKIC------EYLGIPHTDLNFSEYEPPDLNRIEEALAAD-----PDITHVATVHHETTT-GILNP---LEA  146 (355)
T ss_pred             chhhHH--HHHH------HHcCCceEEEecCCCCCCCHHHHHHHHHhC-----CCceEEEEEecCCcc-cchhH---HHH
Confidence            443211  1122      345888888887666788999999999751     156788888888888 89999   999


Q ss_pred             HHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCc-ceeEEeecCccccc
Q psy5413         230 LKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGA-PVGSILAGPEEFIQ  284 (285)
Q Consensus       230 i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~-p~gg~~~~~~~~i~  284 (285)
                      |+++|++||+++|+|++++ +   ......+.|+++.|++||+++ +..|+++.++++++
T Consensus       147 i~~l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~  206 (355)
T TIGR03301       147 IAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLE  206 (355)
T ss_pred             HHHHHHHcCCEEEEEeccccCCcccchhhcCccEEEecCCcccccCCceeEEEECHHHHH
Confidence            9999999999999999876 2   111224688999999999876 43478888777654

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.78  E-value=5e-18  Score=155.52  Aligned_cols=197  Identities=16%  Similarity=0.169  Sum_probs=136.4

Q ss_pred             eeeec-cCCcCCCcHHHHHHHHhcccCC-------CCc-cCChhHHHHHH----HHHhHcCCCcE-EEcCChHHHHHHHH
Q psy5413          68 TVDIR-SDTISKPTMEMKNYMFNCEVGD-------DVY-LEDPTCKELQE----KAAKLAGKEAA-IFVPSGTMGNLIAI  133 (285)
Q Consensus        68 ~~~~~-~~~~~~~~~~v~~a~~~~~~~~-------~~y-~~~~~~~~l~~----~la~~~g~~~~-~~~~~Gs~a~~~al  133 (285)
                      .++|. ++++  .+|+|++++.+.....       ..+ ...+...++++    .+++++|.+.. +++++|++|+..++
T Consensus        27 ~~~l~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~~sgt~al~~~l  104 (416)
T PRK00011         27 HIELIASENF--VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANVQPHSGSQANAAVY  104 (416)
T ss_pred             CeeeecccCc--CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceeeecCCchHHHHHHH
Confidence            34444 4555  6889999986653211       111 12233445544    78999998776 66678999999999


Q ss_pred             HHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413         134 MTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVE  211 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~  211 (285)
                      .+++ ++||+|+++.+.|....... ...    + ...|.+++.++.+ +++.+|++++++++++.      ++++|+++
T Consensus       105 ~~l~-~~gd~Vl~~~~~~~~~~~~~~~~~----~-~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~k~v~~~  172 (416)
T PRK00011        105 FALL-KPGDTILGMDLAHGGHLTHGSPVN----F-SGKLYNVVSYGVDEETGLIDYDEVEKLALEH------KPKLIIAG  172 (416)
T ss_pred             HHhc-CCCCEEEEeccccCCccccccccc----c-ccceeeEeecCcCcccCCcCHHHHHHHHHhc------CCCEEEEC
Confidence            9886 68999999888775432111 010    0 1235667777764 34779999999999652      57888886


Q ss_pred             cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecC-cccc
Q psy5413         212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGP-EEFI  283 (285)
Q Consensus       212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~-~~~i  283 (285)
                      ++.+   |...|   +++|+++|++||+++|+|++|. +..      ....++|+++.|+||+++||+||+++.+ ++++
T Consensus       173 ~~~~---~~~~~---~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~~~di~~~S~~K~l~g~~gg~i~~~~~~~~  246 (416)
T PRK00011        173 ASAY---SRPID---FKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRGGLILTNDEELA  246 (416)
T ss_pred             CCcC---CCccC---HHHHHHHHHHcCCEEEEECcchhcccccCccCCCCCCCcEEEecCCcCCCCCCceEEEeCCHHHH
Confidence            5443   56677   9999999999999999999975 221      1122678999999999988889999885 4654


Q ss_pred             c
Q psy5413         284 Q  284 (285)
Q Consensus       284 ~  284 (285)
                      +
T Consensus       247 ~  247 (416)
T PRK00011        247 K  247 (416)
T ss_pred             H
Confidence            3

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.78  E-value=4e-18  Score=153.37  Aligned_cols=176  Identities=18%  Similarity=0.141  Sum_probs=129.3

Q ss_pred             HHHHHHHHhcccCCCCccC-ChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccc
Q psy5413          81 MEMKNYMFNCEVGDDVYLE-DPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGG  159 (285)
Q Consensus        81 ~~v~~a~~~~~~~~~~y~~-~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~  159 (285)
                      .+.++++.+.+... .+.. .+...++|+.+++++|.+.++.++||+.|+.+++.++-.++|++|+++..+...+.....
T Consensus         5 ~e~~~~v~~~l~s~-~~~~~g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~   83 (363)
T PF01041_consen    5 EEEIDAVLEVLRSG-WLSTYGPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAIL   83 (363)
T ss_dssp             HHHHHHHHHHHHHT-CCSSSSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CccCCCHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHH
Confidence            34556666655543 3333 688999999999999999999999999999999999876789999998877655433222


Q ss_pred             cccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC
Q psy5413         160 ASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN  238 (285)
Q Consensus       160 ~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g  238 (285)
                               ..|.+++.++.+ +++.+|+++++++|++       ++++|++.+..    |...+   +.+|.++|++||
T Consensus        84 ---------~~G~~pv~~Di~~~~~~id~~~~~~~i~~-------~t~ai~~~h~~----G~~~d---~~~i~~~~~~~~  140 (363)
T PF01041_consen   84 ---------WAGAEPVFVDIDPETLNIDPEALEKAITP-------KTKAILVVHLF----GNPAD---MDAIRAIARKHG  140 (363)
T ss_dssp             ---------HTT-EEEEE-BETTTSSB-HHHHHHHHHT-------TEEEEEEE-GG----GB------HHHHHHHHHHTT
T ss_pred             ---------HhccEEEEEeccCCcCCcCHHHHHHHhcc-------CccEEEEecCC----CCccc---HHHHHHHHHHcC
Confidence                     348888888876 6788999999999998       89999999888    78888   999999999999


Q ss_pred             CeEEEeCccCC-hh----hhcccCCeEEEec--ccccCcceeEEeecCc
Q psy5413         239 IPVHMDGARLP-LA----EVCASVDTVMFCL--SKGLGAPVGSILAGPE  280 (285)
Q Consensus       239 i~li~Dea~~~-~~----~~~~~~dv~~~s~--sK~l~~p~gg~~~~~~  280 (285)
                      ++||.|.+|+. ..    ......|+.++||  .|.+...-||+++.+.
T Consensus       141 i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf~~~K~i~~geGG~v~~~~  189 (363)
T PF01041_consen  141 IPLIEDAAQAFGARYKGRPVGSFGDIAIFSFHPTKIITTGEGGAVVTND  189 (363)
T ss_dssp             -EEEEE-TTTTT-EETTEETTSSSSEEEEESSTTSSS-SSS-EEEEEST
T ss_pred             CcEEEccccccCceeCCEeccCCCCceEecCCCCCCCcCCCCeeEEecH
Confidence            99999999882 11    1223457778887  5888776778777654

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.78  E-value=3e-18  Score=152.94  Aligned_cols=178  Identities=21%  Similarity=0.279  Sum_probs=129.2

Q ss_pred             HHHHHHHhcccC-CCCccCChhHHHHHHHHHh----HcCCC----cEEEcCChHHHHHHHHHHcccc-----------CC
Q psy5413          82 EMKNYMFNCEVG-DDVYLEDPTCKELQEKAAK----LAGKE----AAIFVPSGTMGNLIAIMTHCDR-----------RD  141 (285)
Q Consensus        82 ~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~----~~g~~----~~~~~~~Gs~a~~~al~~~~~~-----------~g  141 (285)
                      .+.+.+...... ...|...+...++++.+++    ++|.+    .++|+++|++|+..++.++..+           ++
T Consensus        14 ~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~   93 (345)
T cd06450          14 LLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGI   93 (345)
T ss_pred             HHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhccccccc
Confidence            333444433332 3447766667777777654    45764    5799999999999999987531           22


Q ss_pred             --CeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCe
Q psy5413         142 --SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGG  219 (285)
Q Consensus       142 --~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG  219 (285)
                        ..|++++.+|.+......         ..|.+++.++.++++.+|+++|++++++.. .++.++++|+++.++|++ |
T Consensus        94 ~~~~v~~~~~~h~~~~~~~~---------~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~-~~~~~~~~v~~~~~~~~t-G  162 (345)
T cd06450          94 DKLVIVCSDQAHVSVEKAAA---------YLDVKVRLVPVDEDGRMDPEALEAAIDEDK-AEGLNPIMVVATAGTTDT-G  162 (345)
T ss_pred             CCeEEEEcCcchhHHHHHHH---------HHhcCeEEeeeCCCCCcCHHHHHHHHHHHH-HCCCCcEEEEEecccCCC-C
Confidence              357778888877544222         237888888887777899999999997521 123367889999999998 8


Q ss_pred             eeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-h---------hcccCCeEEEecccccCccee
Q psy5413         220 TVLPMQWLRELKARCQEHNIPVHMDGARLPLA-E---------VCASVDTVMFCLSKGLGAPVG  273 (285)
Q Consensus       220 ~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-~---------~~~~~dv~~~s~sK~l~~p~g  273 (285)
                      .+.+   +++|+++|++||+++|+|++|.... .         ...++|++++++||++++|.|
T Consensus       163 ~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g  223 (345)
T cd06450         163 AIDP---LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLG  223 (345)
T ss_pred             CCCC---HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcc
Confidence            8888   9999999999999999999988221 1         113689999999999887544

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.78  E-value=4.2e-18  Score=156.29  Aligned_cols=238  Identities=13%  Similarity=0.086  Sum_probs=152.0

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC--CCc--cCChh
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD--DVY--LEDPT  102 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~y--~~~~~  102 (285)
                      |..+.++.+.+.|+..++.+++.+..++.                  .+.++.+|++.+++.+++...  ..+  ..++.
T Consensus        24 p~~~~~~~G~~l~d~dG~~~lD~~~g~~~------------------~~lGh~~~~i~~a~~~~~~~~~~~~~~~~~~~~   85 (425)
T PRK08088         24 PIFADRAENCRVWDVEGREYLDFAGGIAV------------------LNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEP   85 (425)
T ss_pred             CceEEeeeeCEEEeCCCCEEEEcCCchhh------------------cCCCCCCHHHHHHHHHHHhhCCCccccccCCHH
Confidence            56667778888887554444443333332                  234778999999999887632  211  12456


Q ss_pred             HHHHHHHHHhHcCC---CcEEEcCChHHHHHHHHHHccccCCC--eEEecCCcceeeecccccccc-ccccccc-----c
Q psy5413         103 CKELQEKAAKLAGK---EAAIFVPSGTMGNLIAIMTHCDRRDS--EIIVGDCSHIMLWEQGGASQT-SVYSQIG-----R  171 (285)
Q Consensus       103 ~~~l~~~la~~~g~---~~~~~~~~Gs~a~~~al~~~~~~~g~--~vi~~~~~h~~~~~~~~~~~~-~~~~~~~-----g  171 (285)
                      ..++.+.+++..+.   +..+|++||++|++.|++++....++  .|.+.+.||+.+.....+... ..+...+     +
T Consensus        86 ~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~  165 (425)
T PRK08088         86 YLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGH  165 (425)
T ss_pred             HHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCC
Confidence            77899999988753   46799999999999999998754433  344577889887543332211 1111111     1


Q ss_pred             eeeeeeecCCCCC---CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413         172 VLMRGVTNQKDGT---FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL  248 (285)
Q Consensus       172 ~~~~~~~~~~~~~---~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~  248 (285)
                      .....+|....+.   .+++++++.++..  .+.+++++|++|+.++..|+...+.+++++|+++|++||+++|+||+++
T Consensus       166 ~~~~~~p~~~~~~~~~~~~~~l~~~l~~~--~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~  243 (425)
T PRK08088        166 VYRALYPCPLHGVSEDDAIASIERIFKND--AAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQT  243 (425)
T ss_pred             cEEcCCCccccCccHHHHHHHHHHHHHhc--cCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence            1112222211110   1256688877521  1234799999999988876778899999999999999999999999988


Q ss_pred             Chh-----hhcccCCeE--EEecccccCc-ceeEEeecCccccc
Q psy5413         249 PLA-----EVCASVDTV--MFCLSKGLGA-PVGSILAGPEEFIQ  284 (285)
Q Consensus       249 ~~~-----~~~~~~dv~--~~s~sK~l~~-p~gg~~~~~~~~i~  284 (285)
                      ++.     ...+..++.  +.++||.+++ .+.|+++.++++++
T Consensus       244 g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G~rig~v~~~~~~~~  287 (425)
T PRK08088        244 GAGRTGTLFAMEQMGVAADLTTFAKSIAGGFPLAGVTGRAEVMD  287 (425)
T ss_pred             CCCcCcchhHHhhcCCCCCEEEEeccccCCCcceeeEecHHHHh
Confidence            321     111122222  7899999987 33455666666554

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.78  E-value=8.2e-18  Score=152.39  Aligned_cols=189  Identities=17%  Similarity=0.168  Sum_probs=132.5

Q ss_pred             eccCCcCCCcHHHHHHHHhcccC-----CC--CccCChhHHHHHHHH---HhHcCC---CcEEEcCChHHHHHHHHHHcc
Q psy5413          71 IRSDTISKPTMEMKNYMFNCEVG-----DD--VYLEDPTCKELQEKA---AKLAGK---EAAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        71 ~~~~~~~~~~~~v~~a~~~~~~~-----~~--~y~~~~~~~~l~~~l---a~~~g~---~~~~~~~~Gs~a~~~al~~~~  137 (285)
                      |.+...+..++.|.+++.+....     +.  .|+ ......+++.+   ++.++.   +.+++++|+++++..++.++.
T Consensus         3 ld~aa~~~~~~~v~~~~~~~~~~~~~n~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~   81 (382)
T TIGR03403         3 LDNNATTMLDPKVKELMDPFFCDIYGNPNSLHQFG-TATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGVY   81 (382)
T ss_pred             ccCcCCCCCCHHHHHHHHHHHHhcCcCCccccHHH-HHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHH
Confidence            33334455678899998765532     11  122 12334455444   444443   456899999999999988753


Q ss_pred             c----cC-CCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         138 D----RR-DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       138 ~----~~-g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      .    ++ +++|+++...|.+........      ...|.+++.++.++++.+|++++++++++       ++++|++++
T Consensus        82 ~~~~~~~~~~~vi~~~~e~ps~~~~~~~~------~~~G~~v~~v~~~~~g~~d~~~l~~~i~~-------~t~lv~~~~  148 (382)
T TIGR03403        82 FDEILKGGKNHIITTEVEHPAVRATCAFL------ESLGVEVTYLPINEQGTITAEQVREAITE-------KTALVSVMW  148 (382)
T ss_pred             HhhcccCCCCEEEEcCCccHHHHHHHHHH------HHCCCEEEEEecCCCCCCCHHHHHHhccc-------CCeEEEEEc
Confidence            1    34 457888877765443321111      34588899998877788899999999987       789999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Ch---hhhcccCCeEEEecccccCcceeEEee
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PL---AEVCASVDTVMFCLSKGLGAPVGSILA  277 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~---~~~~~~~dv~~~s~sK~l~~p~gg~~~  277 (285)
                      ++|++ |.++|   +++|.++|+++|+++|+|+++. +.   .....++|++++|++|++|.+-.|++.
T Consensus       149 ~~n~t-G~~~~---~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~g~l~  213 (382)
T TIGR03403       149 ANNET-GMIFP---IKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHGPKGVGGLY  213 (382)
T ss_pred             ccCCC-ccccC---HHHHHHHHHHcCCEEEEechhhcCCCccCccccCCCEEEEcchhhCCCCceEEEE
Confidence            99999 99999   8999999999999999999987 22   222357999999999987644234443

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.78  E-value=3.8e-18  Score=153.63  Aligned_cols=192  Identities=16%  Similarity=0.131  Sum_probs=137.5

Q ss_pred             CCeeeeeccCCcCCC-cHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc----C---C--CcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISKP-TMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA----G---K--EAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~----g---~--~~~~~~~~Gs~a~~~al~  134 (285)
                      +..+++|..+++..+ .+.+.+++.+.. ....|.......++++.+++++    |   .  +.+++++|+++++..++.
T Consensus        26 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~  104 (364)
T PRK07865         26 PDGIVDLSVGTPVDPVPPVIQEALAAAA-DAPGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPT  104 (364)
T ss_pred             CCCEEEcCCCCCCCCCCHHHHHHHHHHH-hhCCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHH
Confidence            346789998887655 467788876543 2346765556778888888886    3   2  245788888888888777


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      ++..++|+.|+++.++|.......         ...|.+++.++       +++++++   .       ++++|++++|+
T Consensus       105 ~l~~~~gd~Vl~~~p~y~~~~~~~---------~~~g~~~~~~~-------~~~~l~~---~-------~~~~v~~~~p~  158 (364)
T PRK07865        105 LLGLGPGDVVVIPELAYPTYEVGA---------RLAGATVVRAD-------SLTELGP---Q-------RPALIWLNSPS  158 (364)
T ss_pred             HHcCCCCCEEEECCCCcccHHHHH---------HhcCCEEEecC-------ChhhCCc---c-------cceEEEEcCCC
Confidence            662268999999988876543322         23477776663       2233221   2       68999999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------h-hcc-----cCC--eEEEecccccC--cceeEEeec
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------E-VCA-----SVD--TVMFCLSKGLG--APVGSILAG  278 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~-~~~-----~~d--v~~~s~sK~l~--~p~gg~~~~  278 (285)
                      ||| |.+++.+++++|+++|++||+++|+||+|..+.      . +..     ..+  +++.|+||.++  |.++|++++
T Consensus       159 NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~  237 (364)
T PRK07865        159 NPT-GRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAG  237 (364)
T ss_pred             CCC-CccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEec
Confidence            999 999999999999999999999999999987221      1 100     112  45999999885  478889999


Q ss_pred             Cccccc
Q psy5413         279 PEEFIQ  284 (285)
Q Consensus       279 ~~~~i~  284 (285)
                      ++++++
T Consensus       238 ~~~~~~  243 (364)
T PRK07865        238 DPALVA  243 (364)
T ss_pred             CHHHHH
Confidence            887754

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.77  E-value=3.9e-18  Score=153.91  Aligned_cols=196  Identities=19%  Similarity=0.196  Sum_probs=147.6

Q ss_pred             eeccCCcCCCcHHHHHHHHhcccCC------CCcc----CChhHHHHHHHHHhHcCCCc---EEEcCChHHHHHHHHHHc
Q psy5413          70 DIRSDTISKPTMEMKNYMFNCEVGD------DVYL----EDPTCKELQEKAAKLAGKEA---AIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        70 ~~~~~~~~~~~~~v~~a~~~~~~~~------~~y~----~~~~~~~l~~~la~~~g~~~---~~~~~~Gs~a~~~al~~~  136 (285)
                      .|.+...+..++.|++++.+.....      ..+.    ..+...++++.+++++|.+.   ++|+.|++.++..++..+
T Consensus         2 Yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l   81 (371)
T PF00266_consen    2 YLDNAGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSL   81 (371)
T ss_dssp             EEBTSSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHH
T ss_pred             EeeCCCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhcc
Confidence            4555555667889999988764421      1111    23457799999999999876   589999999999999997


Q ss_pred             c--ccCCCeEEecCCcceeeec-ccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         137 C--DRRDSEIIVGDCSHIMLWE-QGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       137 ~--~~~g~~vi~~~~~h~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      .  .++|++|++....|.+... +....      +..|.++..++.+.++.+|+++++++|++       ++++|.+.+.
T Consensus        82 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~------~~~g~~v~~i~~~~~~~~~~~~~~~~l~~-------~~~lv~~~~~  148 (371)
T PF00266_consen   82 LNPLKPGDEVLVTSNEHPSNRYPWEEIA------KRKGAEVRVIPADPGGSLDLEDLEEALNP-------DTRLVSISHV  148 (371)
T ss_dssp             HHHGTTTCEEEEEESSHHHHHHHHHHHH------HHTTEEEEEEEEGTTSSCSHHHHHHHHHT-------TESEEEEESB
T ss_pred             cccccccccccccccccccccccccccc------ccchhhhccccccccchhhhhhhhhhhcc-------ccceEEeecc
Confidence            2  2688999887777655431 11122      35688988888877788999999999987       8999999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----ChhhhcccCCeEEEecccccCcce-eEEeecCcccc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGAPV-GSILAGPEEFI  283 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~p~-gg~~~~~~~~i  283 (285)
                      .+.+ |.+.|   +++|.++||++|+++++|.+++    .+..-..++|+++++.+| |++|. .|++..+++.+
T Consensus       149 ~~~t-G~~~p---i~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~K-l~gp~G~g~l~v~~~~~  218 (371)
T PF00266_consen  149 ENST-GVRNP---IEEIAKLAHEYGALLVVDAAQSAGCVPIDLDELGADFLVFSSHK-LGGPPGLGFLYVRPEAI  218 (371)
T ss_dssp             ETTT-TBBSS---HHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTTTESEEEEESTS-TTSSSTEEEEEEEHHHH
T ss_pred             cccc-cEEee---eceehhhhhccCCceeEechhccccccccccccccceeeecccc-cCCCCchhhheehhhhh
Confidence            9888 89999   9999999999999999999988    233333588999999999 77754 46777666554

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.77  E-value=6.1e-18  Score=150.72  Aligned_cols=193  Identities=17%  Similarity=0.140  Sum_probs=140.7

Q ss_pred             CeeeeeccCCcC-CCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccC
Q psy5413          66 IRTVDIRSDTIS-KPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRR  140 (285)
Q Consensus        66 ~~~~~~~~~~~~-~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~  140 (285)
                      ..+++|..+... .+++.+.+++.+....  ...|. .+...++++.++++++.+  .+++++|+++++..++..+   +
T Consensus        18 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~---~   93 (337)
T PRK03967         18 NYRIWLDKNENPFDLPEELKEEIFEELKRVPFNRYP-HITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVKLF---E   93 (337)
T ss_pred             CceEEecCCCCCCCCCHHHHHHHHHHhhcCccccCC-CCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHh---C
Confidence            456888876655 4668899988766532  34564 457889999999999854  4578888888888777653   6


Q ss_pred             CCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCee
Q psy5413         141 DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT  220 (285)
Q Consensus       141 g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~  220 (285)
                      |++|+++.++|.....   ..      ...|.+++.++.+.++.+|++++++.+ +       +++++++++|+||| |.
T Consensus        94 gd~V~v~~P~y~~~~~---~~------~~~g~~~~~v~~~~~~~~d~~~l~~~~-~-------~~~~v~~~~P~NPt-G~  155 (337)
T PRK03967         94 GKHIVITPPTFGMYSF---YA------KLNGIPVIDVPLKEDFTIDGERIAEKA-K-------NASAVFICSPNNPT-GN  155 (337)
T ss_pred             CCeEEEeCCChHHHHH---HH------HHcCCeEEEeecCCCCCcCHHHHHHhc-c-------CCCEEEEeCCCCCC-CC
Confidence            8999998887753322   22      345888888887666678999998865 3       56888899999999 89


Q ss_pred             eCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcc-cCCeE-EEecccccCc--ceeEEeecCccccc
Q psy5413         221 VLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCA-SVDTV-MFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       221 ~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~-~~dv~-~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      +++.+   +|.++++ +++++|+||+|..+.     .... .-.++ +.|+||.++.  .+.|+++.++++++
T Consensus       156 ~~~~~---~l~~i~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~  224 (337)
T PRK03967        156 LQPEE---EILKVLE-TGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEIID  224 (337)
T ss_pred             CCCHH---HHHHHHh-cCCEEEEECchhhhcccchHHHHhhCCCEEEEecchHhhcchhhhheeeecCHHHHH
Confidence            99954   5555554 799999999987321     1111 22344 8999999874  77888888877654

>PLN02880 tyrosine decarboxylase

Probab=99.77  E-value=3.7e-18  Score=158.44  Aligned_cols=207  Identities=14%  Similarity=0.137  Sum_probs=141.9

Q ss_pred             CCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC--CCccCChhHHHHHHHHHhH----cCCCc
Q psy5413          45 LSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD--DVYLEDPTCKELQEKAAKL----AGKEA  118 (285)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~~~~~~l~~~la~~----~g~~~  118 (285)
                      ...++..+|.+|.+..+...            ....+.++..+.....+.  ..|...|...++|+.+.++    +|.+.
T Consensus        72 ~i~~~~~~~~hP~f~~~~~~------------~~~~~~~lad~l~~~~n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~  139 (490)
T PLN02880         72 KILPGVTHWQSPNYFAYYPS------------NSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLPE  139 (490)
T ss_pred             HHhcCCCCCCCCCeeEeccC------------CCcHHHHHHHHHHHhhccCCcccccCcccHHHHHHHHHHHHHHhCCCc
Confidence            35567778888754444332            222445555554444442  3455567777777776555    46543


Q ss_pred             ---------EEEcCChHHHHHHHHHHccccC---------CC-eEEecCCcceeeecccccccccccccccceeeeeeec
Q psy5413         119 ---------AIFVPSGTMGNLIAIMTHCDRR---------DS-EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN  179 (285)
Q Consensus       119 ---------~~~~~~Gs~a~~~al~~~~~~~---------g~-~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~  179 (285)
                               .+++++||+||..++.++..+.         .+ .|++++.+|.+..++..+.      ......++.+|.
T Consensus       140 ~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~l------Glg~~~v~~Vp~  213 (490)
T PLN02880        140 QFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQIA------GIHPENCRLLKT  213 (490)
T ss_pred             hhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHHc------CCCHHHEEEeec
Confidence                     5899999999999998876421         12 3667899999998866655      222224677777


Q ss_pred             CC--CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----
Q psy5413         180 QK--DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE-----  252 (285)
Q Consensus       180 ~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----  252 (285)
                      +.  ++.+|+++|+++|+++.+. +..+.+|+.+-.+-.+ |.+.|   |++|+++|++||+|+|+|++|++...     
T Consensus       214 d~~~~~~md~~~L~~~i~~~~~~-g~~p~~vvataGTT~~-GaiDp---l~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~  288 (490)
T PLN02880        214 DSSTNYALAPELLSEAISTDLSS-GLIPFFLCATVGTTSS-TAVDP---LLELGKIAKSNGMWFHVDAAYAGSACICPEY  288 (490)
T ss_pred             CCCcCCcCCHHHHHHHHHHHHHC-CCccEEEEEecCCCcC-cccCc---HHHHHHHHHHcCCEEEEehhhHHHHHhCHHH
Confidence            53  5689999999999874332 2345555555545445 99999   99999999999999999999983211     


Q ss_pred             ---h--cccCCeEEEecccccCcceeE
Q psy5413         253 ---V--CASVDTVMFCLSKGLGAPVGS  274 (285)
Q Consensus       253 ---~--~~~~dv~~~s~sK~l~~p~gg  274 (285)
                         +  .+++|.++.++|||++.|.++
T Consensus       289 ~~~l~gie~aDSit~d~HKwl~~P~~~  315 (490)
T PLN02880        289 RHYIDGVEEADSFNMNAHKWFLTNFDC  315 (490)
T ss_pred             HHHhcCchhcCEEEECchhhcCCCccE
Confidence               1  257899999999999986553

>PLN02509 cystathionine beta-lyase

Probab=99.77  E-value=5.4e-18  Score=155.67  Aligned_cols=158  Identities=22%  Similarity=0.223  Sum_probs=124.6

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|...++++.++++.+.+.++.+++|++|+.+++ .++ ++||+||++++.|..+.... ...      ...|.+++.+
T Consensus       131 gnpt~~aLE~~lA~leg~e~ai~~~SG~aAi~~il-~ll-~~GD~VI~~~~~y~~t~~ll~~~l------~~~G~~v~~v  202 (464)
T PLN02509        131 GNPTRDALESLLAKLDKADRAFCFTSGMAALSAVT-HLI-KNGEEIVAGDDVYGGSDRLLSQVV------PRSGVVVKRV  202 (464)
T ss_pred             CCHHHHHHHHHHHHHhCCCEEEEeCcHHHHHHHHH-HHh-CCCCEEEEcCCchhhHHHHHHHHH------HHCCeEEEEe
Confidence            45789999999999999998899999999886655 445 69999999887765443211 111      2347777766


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Ch--hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PL--AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~--~~~~  254 (285)
                      +.     .|+++++++|++       ++++|++++|+||+ |.+.+   +++|+++|++||+++|+|+++. +.  ..+.
T Consensus       203 d~-----~d~e~l~~ai~~-------~TklV~lesPsNPt-G~i~D---l~~I~~lAk~~g~~lIVD~A~a~~~~~~pl~  266 (464)
T PLN02509        203 NT-----TNLDEVAAAIGP-------QTKLVWLESPTNPR-QQISD---IRKIAEMAHAQGALVLVDNSIMSPVLSRPLE  266 (464)
T ss_pred             CC-----CCHHHHHHhCCc-------CCeEEEEECCCCCC-CCHHH---HHHHHHHHHHcCCEEEEECCccccccCChhh
Confidence            53     378999999977       78999999999999 88877   9999999999999999999987 22  2234


Q ss_pred             ccCCeEEEecccccCc---ceeEEeecCc
Q psy5413         255 ASVDTVMFCLSKGLGA---PVGSILAGPE  280 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~  280 (285)
                      .++|+++.|++|++++   .+||+++.+.
T Consensus       267 ~gaDivv~S~tK~l~G~gdv~gG~v~~~~  295 (464)
T PLN02509        267 LGADIVMHSATKFIAGHSDVMAGVLAVKG  295 (464)
T ss_pred             cCCcEEEecCcccccCCCccceeEEEecc
Confidence            5789999999999988   3578887543

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.77  E-value=1.2e-17  Score=151.21  Aligned_cols=182  Identities=16%  Similarity=0.180  Sum_probs=134.3

Q ss_pred             HHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccccc
Q psy5413          81 MEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGA  160 (285)
Q Consensus        81 ~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~  160 (285)
                      ++-++++.+.+.. ..|...+...++|+.+++++|.+.+++++||++|+..++.++..++||+|+++...|..+...   
T Consensus        10 ~~~~~~v~~~~~~-~~~~~g~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~---   85 (380)
T TIGR03588        10 QDDIDAVVEVLKS-DFLTQGPTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATANC---   85 (380)
T ss_pred             HHHHHHHHHHHhc-CCccCChhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHH---
Confidence            3345566555433 234446778999999999999988888899999999999987336899999998877554321   


Q ss_pred             ccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCC
Q psy5413         161 SQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNI  239 (285)
Q Consensus       161 ~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi  239 (285)
                      .      ...|.+++.++.+ .++.+|++++++++++..   .+++++|++.++   + |...+   +++|+++|++||+
T Consensus        86 ~------~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~---~~~t~~v~~~~~---~-G~~~~---~~~i~~l~~~~~~  149 (380)
T TIGR03588        86 A------LYCGAKVDFVDIDPDTGNIDEDALEKKLAAAK---GKLPKAIVPVDF---A-GKSVD---MQAIAALAKKHGL  149 (380)
T ss_pred             H------HHcCCEEEEEecCCCcCCcCHHHHHHHhhccc---CCCceEEEEeCC---C-CccCC---HHHHHHHHHHcCC
Confidence            1      2348888888874 356789999999998310   017888887654   3 78888   9999999999999


Q ss_pred             eEEEeCccC-Chh----hhcc--cCCeEEEecc--cccCcceeEEeecC-ccc
Q psy5413         240 PVHMDGARL-PLA----EVCA--SVDTVMFCLS--KGLGAPVGSILAGP-EEF  282 (285)
Q Consensus       240 ~li~Dea~~-~~~----~~~~--~~dv~~~s~s--K~l~~p~gg~~~~~-~~~  282 (285)
                      +||+|++|+ +..    .+..  ..|+.++|+|  |+++.+.||+++.+ +++
T Consensus       150 ~lI~D~a~a~g~~~~~~~~g~~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~  202 (380)
T TIGR03588       150 KIIEDASHALGAEYGGKPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDEEL  202 (380)
T ss_pred             EEEEECCCcccCccCCEeCCCccccceEEEecCCCCcccccCceEEEECCHHH
Confidence            999999998 211    1112  4588888887  89988778877654 443

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.77  E-value=8.3e-18  Score=155.25  Aligned_cols=201  Identities=15%  Similarity=0.104  Sum_probs=153.3

Q ss_pred             CeeeeeccCCcCC---CcHHHHHHHHhccc----C-CCCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHH
Q psy5413          66 IRTVDIRSDTISK---PTMEMKNYMFNCEV----G-DDVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGN  129 (285)
Q Consensus        66 ~~~~~~~~~~~~~---~~~~v~~a~~~~~~----~-~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~  129 (285)
                      ...++|..+.+..   +.....+++.+...    . ...|+...+..+|++.+++++.        .+.++++++..+|+
T Consensus        89 ~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al  168 (459)
T COG1167          89 PSVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQAL  168 (459)
T ss_pred             CceecCCCCCCCcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHH
Confidence            5667887776544   45555555554432    1 2355555788899999988863        23468888889999


Q ss_pred             HHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413         130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVC  209 (285)
Q Consensus       130 ~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~  209 (285)
                      ..++++++ .+||.|++.+++|.....   +.      +..|.+++.+|.+++ .+|+++|++.+.++      ++|+++
T Consensus       169 ~l~~~~l~-~pGd~v~vE~PtY~~~~~---~~------~~~g~~~~~vp~d~~-G~~~e~le~~~~~~------~~k~~y  231 (459)
T COG1167         169 DLLLRLLL-DPGDTVLVEDPTYPGALQ---AL------EALGARVIPVPVDED-GIDPEALEEALAQW------KPKAVY  231 (459)
T ss_pred             HHHHHHhC-CCCCEEEEcCCCcHHHHH---HH------HHcCCcEEecCCCCC-CCCHHHHHHHHhhc------CCcEEE
Confidence            99999988 599999999888754322   22      356999999999644 48999999999873      789999


Q ss_pred             Eec-ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC----------hhhhcccCCeE-EEecccccCc-ceeEEe
Q psy5413         210 VEN-THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP----------LAEVCASVDTV-MFCLSKGLGA-PVGSIL  276 (285)
Q Consensus       210 i~~-~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~----------~~~~~~~~dv~-~~s~sK~l~~-p~gg~~  276 (285)
                      +.+ -+||| |.+++.+.-++|.++|++||+++|.|+.+..          +..+...--++ +.||||.+.. .+.|++
T Consensus       232 ~~P~~qNPt-G~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~v  310 (459)
T COG1167         232 VTPTFQNPT-GVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYV  310 (459)
T ss_pred             ECCCCCCCC-CCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhcccccceeee
Confidence            998 89999 9999999999999999999999999999871          12222222344 9999999987 888999


Q ss_pred             ecCccccc
Q psy5413         277 AGPEEFIQ  284 (285)
Q Consensus       277 ~~~~~~i~  284 (285)
                      +.++++++
T Consensus       311 v~p~~~~~  318 (459)
T COG1167         311 VAPPELIE  318 (459)
T ss_pred             eCCHHHHH
Confidence            99887764

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.77  E-value=1.3e-17  Score=150.45  Aligned_cols=182  Identities=16%  Similarity=0.159  Sum_probs=133.4

Q ss_pred             cHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccc
Q psy5413          80 TMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGG  159 (285)
Q Consensus        80 ~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~  159 (285)
                      .++..+++.+.+.....++..+...++++.+++++|.+.+++++||++|+..++.++..++||+|+++..+|..+.... 
T Consensus        10 ~~~e~~a~~~~~~~~~~~~~g~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~-   88 (376)
T TIGR02379        10 TGQELEYIAEAISEGKLSGDGPFSRRCETWLENRTGTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAF-   88 (376)
T ss_pred             CHHHHHHHHHHHHcCCccCCcHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHH-
Confidence            3445667776655444444567789999999999999999999999999999998873368999999988876553322 


Q ss_pred             cccccccccccceeeeeeecCCC-CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC
Q psy5413         160 ASQTSVYSQIGRVLMRGVTNQKD-GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN  238 (285)
Q Consensus       160 ~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g  238 (285)
                              ...|.+++.++.+++ +.+|++++++++++       ++++|+..+   ++ |...+   +++|.++|++||
T Consensus        89 --------~~~G~~~v~vd~d~~~~~~d~~~le~~i~~-------~tk~Iip~~---~~-G~~~d---~~~I~~la~~~~  146 (376)
T TIGR02379        89 --------VLRGAKIVFVDIRPDTMNIDETLIESAITH-------RTKAIVPVH---YA-GVACD---MDTIMALANKHQ  146 (376)
T ss_pred             --------HHcCCEEEEEecCCCcCCCCHHHHHHhcCc-------CceEEEEeC---CC-CCccC---HHHHHHHHHHCC
Confidence                    234888888887655 57899999999987       789987544   45 88899   899999999999


Q ss_pred             CeEEEeCccCChh---h--hcccCCeEEEecc--cccCc-ceeEEee-cCccccc
Q psy5413         239 IPVHMDGARLPLA---E--VCASVDTVMFCLS--KGLGA-PVGSILA-GPEEFIQ  284 (285)
Q Consensus       239 i~li~Dea~~~~~---~--~~~~~dv~~~s~s--K~l~~-p~gg~~~-~~~~~i~  284 (285)
                      +++|+|++|+...   .  .....|+.++|++  |.++. +.||+++ .++++.+
T Consensus       147 i~vIeDaa~~~g~~~~~~~~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~  201 (376)
T TIGR02379       147 LFVIEDAAQGVMSTYKGRALGSIGHLGTFSFHETKNYTSGGEGGALLINDQAFIE  201 (376)
T ss_pred             CEEEEECccccCCccCCcccCCCCCEEEEeCCCCCcCcccCCceEEEECCHHHHH
Confidence            9999999987211   1  1122355566654  55543 4666654 4566553

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.77  E-value=4.9e-18  Score=152.55  Aligned_cols=192  Identities=16%  Similarity=0.111  Sum_probs=136.7

Q ss_pred             CCeeeeeccCCcCCC-cHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc----C---C--CcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISKP-TMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA----G---K--EAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~----g---~--~~~~~~~~Gs~a~~~al~  134 (285)
                      +..+++|..+++..+ .+.+.+++.+.. ....|....+..+|++.+++++    |   .  +.+++++|+++++..++.
T Consensus        20 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~   98 (357)
T TIGR03539        20 PDGIVDLSVGTPVDPVPPLIRAALAAAA-DAPGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPT   98 (357)
T ss_pred             CCCeEEccCCCCCCCCCHHHHHHHHHHH-hhCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHH
Confidence            456789998877654 567788876543 3445665555678888888876    3   2  345788888999988887


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      ++..++||.|++++++|......   .      ...|.+++.++       +++.++   ..       ++++|++++|+
T Consensus        99 ~l~~~~gd~Vl~~~p~y~~~~~~---~------~~~g~~~~~v~-------~~~~l~---~~-------~~~~v~~~~p~  152 (357)
T TIGR03539        99 LLGLGPGDTVVIPELAYPTYEVG---A------LLAGATPVAAD-------DPTELD---PV-------GPDLIWLNSPG  152 (357)
T ss_pred             HHcCCCCCEEEECCCCcHHHHHH---H------HhcCCEEeccC-------ChhhcC---cc-------CccEEEEeCCC
Confidence            76336999999998887544321   1      23477766653       233222   12       78999999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhcc-----cC-C-eEEEecccccC--cceeEEeec
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVCA-----SV-D-TVMFCLSKGLG--APVGSILAG  278 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~~-----~~-d-v~~~s~sK~l~--~p~gg~~~~  278 (285)
                      ||| |.+++.+++++|+++|++||+++|+||+|..+.       .+..     .. . +++.|+||.++  |.++|++++
T Consensus       153 NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~  231 (357)
T TIGR03539       153 NPT-GRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAG  231 (357)
T ss_pred             CCc-CccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEec
Confidence            999 999999999999999999999999999986211       1110     11 2 44899999864  478889998


Q ss_pred             Cccccc
Q psy5413         279 PEEFIQ  284 (285)
Q Consensus       279 ~~~~i~  284 (285)
                      ++++++
T Consensus       232 ~~~~~~  237 (357)
T TIGR03539       232 DPALVA  237 (357)
T ss_pred             CHHHHH
Confidence            887654

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.77  E-value=1.2e-17  Score=151.00  Aligned_cols=178  Identities=16%  Similarity=0.128  Sum_probs=133.1

Q ss_pred             HHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccccccc
Q psy5413          83 MKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQ  162 (285)
Q Consensus        83 v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~  162 (285)
                      -.+++.+.+.....++..+...++++.+++++|.+.+++++||++|+..++.++..++||+|+++..+|..+.....   
T Consensus        13 ~~~~~~~~l~~~~~~g~~~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~---   89 (375)
T PRK11706         13 ELDYIQQAMSSGKLCGDGGFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFV---   89 (375)
T ss_pred             HHHHHHHHHHcCCccCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHH---
Confidence            35556555544445555677899999999999999999999999999888876644689999999988876544222   


Q ss_pred             ccccccccceeeeeeecCCC-CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeE
Q psy5413         163 TSVYSQIGRVLMRGVTNQKD-GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPV  241 (285)
Q Consensus       163 ~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~l  241 (285)
                            ..|.+++.++.+++ +.+|++++++++++       ++++|++.++   + |...+   +++|.++|++||+++
T Consensus        90 ------~~G~~~v~~d~d~~~~~~d~~~le~~i~~-------~tk~i~~~~~---~-G~~~~---~~~i~~la~~~~i~v  149 (375)
T PRK11706         90 ------LRGAKIVFVDIRPDTMNIDETLIEAAITP-------KTRAIVPVHY---A-GVACE---MDTIMALAKKHNLFV  149 (375)
T ss_pred             ------HcCCEEEEEecCCCcCCcCHHHHHHhcCC-------CCeEEEEeCC---C-CCccC---HHHHHHHHHHcCCEE
Confidence                  34888888887654 46899999999987       7899987654   4 78888   899999999999999


Q ss_pred             EEeCccCChh-----hhcccCCeEEEecc--cccCcc-eeEEeecCcccc
Q psy5413         242 HMDGARLPLA-----EVCASVDTVMFCLS--KGLGAP-VGSILAGPEEFI  283 (285)
Q Consensus       242 i~Dea~~~~~-----~~~~~~dv~~~s~s--K~l~~p-~gg~~~~~~~~i  283 (285)
                      |+|++|+...     ......|+.++|++  |.++.. .|++++.++++.
T Consensus       150 IeD~a~a~g~~~~~~~~g~~~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~  199 (375)
T PRK11706        150 VEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTAGEGGALLINDPALI  199 (375)
T ss_pred             EEECccccccccCCeeeecCcCEEEEeCCCCccccccCCeEEEECCHHHH
Confidence            9999987221     11223466677766  999764 455666566654

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.77  E-value=8.3e-18  Score=151.75  Aligned_cols=185  Identities=19%  Similarity=0.229  Sum_probs=133.6

Q ss_pred             CcHHHHHHHHhccc---CC-CCcc-CChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccc-----cCCCeEEe
Q psy5413          79 PTMEMKNYMFNCEV---GD-DVYL-EDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCD-----RRDSEIIV  146 (285)
Q Consensus        79 ~~~~v~~a~~~~~~---~~-~~y~-~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~-----~~g~~vi~  146 (285)
                      +.|.+.+++.+...   +. ..|. ......++++.+++++|.+.  .+++++|++++..++.++..     .+|++|++
T Consensus        32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~  111 (373)
T TIGR03812        32 PHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIV  111 (373)
T ss_pred             chHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEE
Confidence            46666666554422   21 1222 23446889999999999764  48899999999888876542     35678999


Q ss_pred             cCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCce-EEEEEecccCCCCeeeCCHH
Q psy5413         147 GDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCAST-SLVCVENTHNYCGGTVLPMQ  225 (285)
Q Consensus       147 ~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~-~~v~i~~~~n~~gG~~~~~~  225 (285)
                      ++..|.+....   .      +..|.+++.++.++++.+|++++++++++       ++ ++++++ ++|++ |.+.|  
T Consensus       112 ~~~~h~~~~~~---~------~~~G~~~~~v~~~~~~~~d~~~l~~~l~~-------~~~~vv~~~-~~~~t-G~~~~--  171 (373)
T TIGR03812       112 PESAHFSFEKA---A------EMLGLELRYAPLDEDYTVDVKDVEDLIDD-------NTIGIVGIA-GTTEL-GQIDD--  171 (373)
T ss_pred             CCcchHHHHHH---H------HHcCCeEEEEeeCCCCCcCHHHHHHHHhh-------CcEEEEEEC-CCCCC-CccCC--
Confidence            99888765432   2      34488889998877788999999999977       44 445554 67888 89999  


Q ss_pred             HHHHHHHHHHHcCCeEEEeCccCChh-h----------h---cccCCeEEEecccccCc--ceeEEeecCccccc
Q psy5413         226 WLRELKARCQEHNIPVHMDGARLPLA-E----------V---CASVDTVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       226 ~l~~i~~la~~~gi~li~Dea~~~~~-~----------~---~~~~dv~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                       +++|+++|+++|+++|+|++|+... .          .   ..++|.++++.+||+.+  +.|++++.++++++
T Consensus       172 -~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~  245 (373)
T TIGR03812       172 -IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLK  245 (373)
T ss_pred             -HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHh
Confidence             9999999999999999999997221 1          1   12567788999997544  56777777776653

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.77  E-value=1e-17  Score=150.49  Aligned_cols=212  Identities=19%  Similarity=0.285  Sum_probs=141.4

Q ss_pred             CCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhH----cCCC-
Q psy5413          45 LSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKL----AGKE-  117 (285)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~----~g~~-  117 (285)
                      ...+++..|.+|.+......            ....+.+...+.....+  ...+...|...++|+.+.++    +|.+ 
T Consensus        29 ~l~~~~~~~~~P~~~~~~~~------------~~~~~~i~~~~l~~~~n~n~~~~~~~P~~~~~E~~vi~~l~~l~g~~~   96 (373)
T PF00282_consen   29 ILAPGVTHWHHPRFFGFVPG------------GPSPASILADLLASALNQNGFTWEASPAATEIEREVIRWLADLFGLPE   96 (373)
T ss_dssp             HTHGCS-TTTSTTBESSSHT--------------CHHHHHHHHHHHHHT-BTTSTTTSHHHHHHHHHHHHHHHHHTTGSG
T ss_pred             HhhccCCCCCChhHhhhccC------------CccHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHhCCcc
Confidence            34567778887754444332            22344555555444443  33455678888888776554    5655 


Q ss_pred             --------cEEEcCChHHHHHHHHHHccccC-------C-----C-eEEecCCcceeeecccccccccccccccceeeee
Q psy5413         118 --------AAIFVPSGTMGNLIAIMTHCDRR-------D-----S-EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRG  176 (285)
Q Consensus       118 --------~~~~~~~Gs~a~~~al~~~~~~~-------g-----~-~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~  176 (285)
                              ..+++++||++|..++.++.++.       |     + .+++++..|.+..++..+.         |..++.
T Consensus        97 ~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~l---------Glg~~~  167 (373)
T PF00282_consen   97 SFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARIL---------GLGVRK  167 (373)
T ss_dssp             GTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHHHT---------TSEEEE
T ss_pred             cccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhccee---------eeEEEE
Confidence                    25999999999999998875321       2     2 4677888999887755555         777999


Q ss_pred             eecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----
Q psy5413         177 VTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----  251 (285)
Q Consensus       177 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----  251 (285)
                      +|.++++.+|+++|+++|++... .+..+.+|+.+..+..+ |.+.|   +++|+++|+++++|+|+|+++++..     
T Consensus       168 I~~~~~~~md~~~L~~~l~~~~~-~g~~p~~vvat~Gtt~~-Ga~D~---l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~  242 (373)
T PF00282_consen  168 IPTDEDGRMDIEALEKALEKDIA-NGKTPFAVVATAGTTNT-GAIDP---LEEIADICEKYNIWLHVDAAYGGSALLSPE  242 (373)
T ss_dssp             E-BBTTSSB-HHHHHHHHHHHHH-TTEEEEEEEEEBS-TTT-SBB-S---HHHHHHHHHHCT-EEEEEETTGGGGGGHCT
T ss_pred             ecCCcchhhhHHHhhhhhccccc-ccccceeeeccCCCccc-ccccC---HHHHhhhccccceeeeeccccccccccccc
Confidence            99988899999999999976432 22234455555555555 89999   9999999999999999999988421     


Q ss_pred             -----hhcccCCeEEEecccccCcc--eeEEeecCccc
Q psy5413         252 -----EVCASVDTVMFCLSKGLGAP--VGSILAGPEEF  282 (285)
Q Consensus       252 -----~~~~~~dv~~~s~sK~l~~p--~gg~~~~~~~~  282 (285)
                           .-.+.+|.++.++|||++.|  .|.+++.++..
T Consensus       243 ~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~  280 (373)
T PF00282_consen  243 YRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSD  280 (373)
T ss_dssp             TGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGG
T ss_pred             ccccccccccccccccchhhhhcCCccceeEEeecccc
Confidence                 22367899999999999984  44555666544

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.76  E-value=1.2e-17  Score=150.64  Aligned_cols=194  Identities=18%  Similarity=0.198  Sum_probs=134.4

Q ss_pred             eeeeeccCCcCC--CcHHHHHHHHhcccC-----------C----CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHH
Q psy5413          67 RTVDIRSDTISK--PTMEMKNYMFNCEVG-----------D----DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGN  129 (285)
Q Consensus        67 ~~~~~~~~~~~~--~~~~v~~a~~~~~~~-----------~----~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~  129 (285)
                      ++++|.++++-.  .+|.+.+++.+....           .    ..++..+.+.++|+.+++++|.+.++++++|+.|+
T Consensus         5 ~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~l~~~sG~~a~   84 (370)
T PRK05937          5 LSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSGYMAN   84 (370)
T ss_pred             ceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeEEEECChHHHH
Confidence            568888766665  455555554433211           1    12235577999999999999999889999999999


Q ss_pred             HHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413         130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVC  209 (285)
Q Consensus       130 ~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~  209 (285)
                      ...+..+. ++++.|+++...|.++.......        .+.. +.+     .+.|+++|++++++..+ ..+++.+|+
T Consensus        85 ~~~~~~~~-~~~d~ii~d~~~H~sv~~~~~~~--------~~~~-~~~-----~~~d~~~l~~~l~~~~~-~~~~~~~v~  148 (370)
T PRK05937         85 LGLCAHLS-SVTDYVLWDEQVHISVVYSLSVI--------SGWH-QSF-----RHNDLDHLESLLESCRQ-RSFGRIFIF  148 (370)
T ss_pred             HHHHHHhC-CCCCEEEEEhhhhHHHHHHHHHc--------CCce-EEe-----cCCCHHHHHHHHHhhhc-cCCCcEEEE
Confidence            86665543 46787888899998775532222        1222 223     24589999999975211 112467888


Q ss_pred             EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhhh-------c---ccCCeEEEecccccCcceeEEeec
Q psy5413         210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAEV-------C---ASVDTVMFCLSKGLGAPVGSILAG  278 (285)
Q Consensus       210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~~-------~---~~~dv~~~s~sK~l~~p~gg~~~~  278 (285)
                      +++++|++ |.+.|   +++|+++|+++|+++|+||+|+ +....       .   .+.++++.|+||.+|+ .|+.++.
T Consensus       149 v~~v~s~~-G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~-~G~~vl~  223 (370)
T PRK05937        149 VCSVYSFK-GTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGS-MGAALLS  223 (370)
T ss_pred             EecCCCCC-CCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhc-CceEEEc
Confidence            99999999 99999   9999999999999999999998 21110       1   2233568999999875 5555655


Q ss_pred             Ccc
Q psy5413         279 PEE  281 (285)
Q Consensus       279 ~~~  281 (285)
                      .++
T Consensus       224 ~~~  226 (370)
T PRK05937        224 SSE  226 (370)
T ss_pred             CHH
Confidence            554

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.76  E-value=1.4e-17  Score=147.42  Aligned_cols=180  Identities=18%  Similarity=0.149  Sum_probs=138.8

Q ss_pred             cHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccc
Q psy5413          80 TMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGG  159 (285)
Q Consensus        80 ~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~  159 (285)
                      ..+..+++.+.+.. ..+...+...++|+.+++++|.+.++.++|||.|+.++++++.-++||+||++..++..+.....
T Consensus        14 ~~~e~~~v~~vl~s-g~i~~G~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~   92 (374)
T COG0399          14 GEEELAAVQEVLKS-GWLTGGPFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVL   92 (374)
T ss_pred             chHHHHHHHHHHHc-CCeecChHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHH
Confidence            34555666665542 22333678999999999999999999999999999999997655799999999888766644222


Q ss_pred             cccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC
Q psy5413         160 ASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN  238 (285)
Q Consensus       160 ~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g  238 (285)
                               ..|.+.+.+..++ .+.+|++.||++|++       +||+|+..+..    |..++   +++|.++|++||
T Consensus        93 ---------~~Ga~PVFvDid~~T~nid~~~ie~aIt~-------~tKAIipVhl~----G~~~d---m~~i~~la~~~~  149 (374)
T COG0399          93 ---------LVGAKPVFVDIDPDTLNIDPDLIEAAITP-------RTKAIIPVHLA----GQPCD---MDAIMALAKRHG  149 (374)
T ss_pred             ---------HcCCeEEEEecCCcccCCCHHHHHHHccc-------CCeEEEEehhc----cCCCC---HHHHHHHHHHcC
Confidence                     3388888888764 478999999999998       79999998877    89999   999999999999


Q ss_pred             CeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecC-cccc
Q psy5413         239 IPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGP-EEFI  283 (285)
Q Consensus       239 i~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~-~~~i  283 (285)
                      ++||.|.+|+ +..      +-...+.++.+...|.++.--||.++++ +++.
T Consensus       150 l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittgEGGav~tnd~ela  202 (374)
T COG0399         150 LPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTGEGGAVVTNDEELA  202 (374)
T ss_pred             CeEEEEcchhccCeecCcccccccceEEEEecCCCCccccCceEEEeCCHHHH
Confidence            9999999988 211      1112233446777899887567766655 4544

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.76  E-value=1.1e-17  Score=148.78  Aligned_cols=181  Identities=14%  Similarity=0.029  Sum_probs=130.6

Q ss_pred             eeeeeccC-CcCCCcH-HHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeE
Q psy5413          67 RTVDIRSD-TISKPTM-EMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEI  144 (285)
Q Consensus        67 ~~~~~~~~-~~~~~~~-~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~v  144 (285)
                      .+++|+++ ++.++++ .+.+..   .   ..|. .+ ..+|++.++++++.+.+++++|+++++..++.  + .+||+|
T Consensus        21 ~~i~l~~ne~p~~~~~~~~~~~~---~---~~yp-~~-~~~Lr~~ia~~~~~~~I~it~Gs~~al~~~~~--~-~~gd~v   89 (330)
T PRK05664         21 DWLDLSTGIAPWPWPVPAIPADA---W---ARLP-ET-DDGLEAAARAYYGAPQLLPVAGSQAAIQALPR--L-RAPGRV   89 (330)
T ss_pred             HheeecCCcCCCCCCCcccCHHH---H---HhCC-CC-hHHHHHHHHHHhCCCCEEECcCHHHHHHHHHH--c-cCCCEE
Confidence            45788765 6544442 322211   1   2243 22 27899999999999988999999999887753  3 589999


Q ss_pred             EecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCH
Q psy5413         145 IVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPM  224 (285)
Q Consensus       145 i~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~  224 (285)
                      +++++++.......         +..|.+++.++.        ++++++++        +++++++++|+||| |.+++.
T Consensus        90 ~v~~P~y~~~~~~~---------~~~g~~~~~v~~--------~~~~~~~~--------~~~~v~l~nP~NPT-G~~~s~  143 (330)
T PRK05664         90 GVLSPCYAEHAHAW---------RRAGHQVRELDE--------AEVEAALD--------SLDVLVVVNPNNPT-GRRFDP  143 (330)
T ss_pred             EEcCCChHHHHHHH---------HHcCCeEEEech--------hhHhhhhc--------CCCEEEEeCCcCCC-CCccCH
Confidence            99988875554322         344888888765        24555553        46788999999999 999999


Q ss_pred             HHHHHHHHHHHHcCCeEEEeCccCCh------hhhcccCCe-EEEecccccCc--ceeEEeecCccccc
Q psy5413         225 QWLRELKARCQEHNIPVHMDGARLPL------AEVCASVDT-VMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       225 ~~l~~i~~la~~~gi~li~Dea~~~~------~~~~~~~dv-~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      +++++|+++|+++|+++|+||+|...      ..+...-.+ ++.||||.++.  .+.|++++++++++
T Consensus       144 ~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~  212 (330)
T PRK05664        144 ARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFFGLAGARLGFVLAEPALLR  212 (330)
T ss_pred             HHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeeccccccCCCcceEEEEeCHHHHH
Confidence            99999999999999999999998622      122222234 49999999874  67788888887764

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.76  E-value=1.4e-17  Score=143.25  Aligned_cols=177  Identities=20%  Similarity=0.254  Sum_probs=138.9

Q ss_pred             CcHHHHHHHHhcccCCCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeec
Q psy5413          79 PTMEMKNYMFNCEVGDDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWE  156 (285)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~  156 (285)
                      ..++-..++-..-.-...|.  .+|....||++|+.+.|--..+-+.||..|+..++..++ ++||+|+....-++-+..
T Consensus        38 ~d~~haa~lF~l~~~G~iYsRi~NPT~~vlE~RiAaLEGG~aa~a~aSG~AA~~~ai~~la-~aGD~iVss~~LYGGT~~  116 (426)
T COG2873          38 DDTDHAAALFGLKEPGNIYTRIMNPTTDVLEERIAALEGGVAALAVASGQAAITYAILNLA-GAGDNIVSSSKLYGGTYN  116 (426)
T ss_pred             CCHHHHHHHhCCCcCCceeeeccCchHHHHHHHHHHhhcchhhhhhccchHHHHHHHHHhc-cCCCeeEeeccccCchHH
Confidence            44444444433222245554  789999999999999998888999999999999999988 599998875443332221


Q ss_pred             -ccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHH
Q psy5413         157 -QGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQ  235 (285)
Q Consensus       157 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~  235 (285)
                       +...-      ..+|.++..+..+     |++.++++|++       +||+|++|...||. +.+.|   +++|.++||
T Consensus       117 lf~~tl------~~~Gi~v~fvd~~-----d~~~~~~aI~~-------nTkavf~EtigNP~-~~v~D---ie~ia~iAh  174 (426)
T COG2873         117 LFSHTL------KRLGIEVRFVDPD-----DPENFEAAIDE-------NTKAVFAETIGNPG-LDVLD---IEAIAEIAH  174 (426)
T ss_pred             HHHHHH------HhcCcEEEEeCCC-----CHHHHHHHhCc-------ccceEEEEeccCCC-ccccC---HHHHHHHHH
Confidence             11111      3568888887653     79999999999       99999999999998 89999   999999999


Q ss_pred             HcCCeEEEeCccCCh---hhhcccCCeEEEecccccCc---ceeEEeec
Q psy5413         236 EHNIPVHMDGARLPL---AEVCASVDTVMFCLSKGLGA---PVGSILAG  278 (285)
Q Consensus       236 ~~gi~li~Dea~~~~---~~~~~~~dv~~~s~sK~l~~---p~gg~~~~  278 (285)
                      +||+++|+|...++.   ..+..++|+|+.|.+||+||   -+||+++.
T Consensus       175 ~~gvpliVDNT~atpyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD  223 (426)
T COG2873         175 RHGVPLIVDNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVD  223 (426)
T ss_pred             HcCCcEEEecCCCcceecchhhcCCCEEEEeecccccCCccccceEEEe
Confidence            999999999998743   34456899999999999999   78888864

>PLN02672 methionine S-methyltransferase

Probab=99.76  E-value=1.3e-17  Score=164.09  Aligned_cols=207  Identities=12%  Similarity=0.064  Sum_probs=145.4

Q ss_pred             ccccCCeeeeeccCCcCC-CcHHHHHHHHhcccCCC-CccCChhHHHHHHHHHhHcCCC-----cEEEcCChHHHHHHHH
Q psy5413          61 LGKVNIRTVDIRSDTISK-PTMEMKNYMFNCEVGDD-VYLEDPTCKELQEKAAKLAGKE-----AAIFVPSGTMGNLIAI  133 (285)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~-~y~~~~~~~~l~~~la~~~g~~-----~~~~~~~Gs~a~~~al  133 (285)
                      ....+..++++..+.+.. +++.+++++.+...... .++.......+++.+++..|.+     .+++++++++++..++
T Consensus       692 ~~~~g~~vI~LsinE~d~ppPp~V~eAi~eal~~~~~s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll  771 (1082)
T PLN02672        692 SGSQESSLIHMDVDESFLPVPSAVKASIFESFVRQNISESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLV  771 (1082)
T ss_pred             cccCCCCEEEEeCCCCCCCCCHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHH
Confidence            334567889998665555 66789999887543222 2223344677788887776653     2455665566666777


Q ss_pred             HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413         134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVE  211 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~  211 (285)
                      .+++ ++||.|+++.+++.......         ...|.+++.++..+  ++.+|++++++++++.      +.++|+++
T Consensus       772 ~aLl-~pGD~VLVp~PtY~~Y~~~a---------~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~------~~~~I~L~  835 (1082)
T PLN02672        772 LCCV-QEGGTLCFPAGSNGTYVSAA---------KFLKANFRRIPTKSSDGFKLTAKTLASTLETV------KKPWVYIS  835 (1082)
T ss_pred             HHHc-CCCCEEEEeCCChHHHHHHH---------HHcCCEEEEEecccccCCCCCHHHHHHHhccC------CCCEEEEE
Confidence            8776 69999999988876554422         34488999998753  4678999999998651      23578888


Q ss_pred             ccc-CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh------------hc---cc----CCeE-EEecccccCc
Q psy5413         212 NTH-NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE------------VC---AS----VDTV-MFCLSKGLGA  270 (285)
Q Consensus       212 ~~~-n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~------------~~---~~----~dv~-~~s~sK~l~~  270 (285)
                      +|+ ||| |.+++.+++++|+++|++||++||+||+|..+..            ..   ..    ..++ +.|+||.++.
T Consensus       836 nPnhNPT-G~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~l  914 (1082)
T PLN02672        836 GPTINPT-GLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLS  914 (1082)
T ss_pred             CcCCCCc-CccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhcc
Confidence            886 999 9999999999999999999999999999872111            11   11    1244 7899997665


Q ss_pred             --ceeEEeecC-ccccc
Q psy5413         271 --PVGSILAGP-EEFIQ  284 (285)
Q Consensus       271 --p~gg~~~~~-~~~i~  284 (285)
                        .+.|+++++ +++++
T Consensus       915 pGLRIGylIap~~eLi~  931 (1082)
T PLN02672        915 GGHEFGFLALNDSVLID  931 (1082)
T ss_pred             HHHHheeEEeCCHHHHH
Confidence              677788775 43543

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.76  E-value=1.1e-17  Score=152.70  Aligned_cols=195  Identities=15%  Similarity=0.099  Sum_probs=136.4

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccC------CCCccCChhHHHHHHHHHhHc---CC--CcEEEcCChHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG------DDVYLEDPTCKELQEKAAKLA---GK--EAAIFVPSGTMGNLIA  132 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~------~~~y~~~~~~~~l~~~la~~~---g~--~~~~~~~~Gs~a~~~a  132 (285)
                      +..+++|..+.+.. +.+.+.+++.+....      ...|++.+...+|++.+++++   +.  +.+++++|+++++...
T Consensus        32 ~~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al~~l  111 (402)
T TIGR03542        32 SADIIRLGIGDTTQPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDVFRL  111 (402)
T ss_pred             CCCeEEcCCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHHHHH
Confidence            35678888777665 566788887765432      134766677899999999975   32  3467888888888875


Q ss_pred             HHHccccCCCeEEecCCcceeeecccccccccccccccce-----------eeeeeecCCC--CCCCHHHHHHHhccccc
Q psy5413         133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRV-----------LMRGVTNQKD--GTFDLDEMEAKFSTADN  199 (285)
Q Consensus       133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~-----------~~~~~~~~~~--~~~d~~~l~~~i~~~~~  199 (285)
                      + .++ .+|++|++++++|.......         ...|.           +++.++.+++  ...|+++     ..   
T Consensus       112 ~-~l~-~~gd~Vlv~~P~y~~~~~~~---------~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~---  172 (402)
T TIGR03542       112 Q-SLF-GSDNTVAVQDPVYPAYVDSN---------VMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE-----EP---  172 (402)
T ss_pred             H-Hhc-CCCCEEEEeCCCCcchHHHH---------HHcCCccccccccccceEEEeecchhhCCCCCccc-----cC---
Confidence            4 445 58999999888765443321         22355           6777775432  2233211     12   


Q ss_pred             ccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc--cc-CC--eEEEecccc
Q psy5413         200 IHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC--AS-VD--TVMFCLSKG  267 (285)
Q Consensus       200 ~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~--~~-~d--v~~~s~sK~  267 (285)
                          ++++|++++|+||| |.+++.+++++|+++|++||+++|+||+|..+.       .+.  .. .+  +++.|+||.
T Consensus       173 ----~~~~i~l~nP~NPT-G~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~  247 (402)
T TIGR03542       173 ----KIDIIYLCSPNNPT-GTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKT  247 (402)
T ss_pred             ----CceEEEEeCCCCCC-CccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccc
Confidence                68999999999999 999999999999999999999999999987211       111  11 12  338999998


Q ss_pred             cCc--ceeEEeecCcccc
Q psy5413         268 LGA--PVGSILAGPEEFI  283 (285)
Q Consensus       268 l~~--p~gg~~~~~~~~i  283 (285)
                      +|.  .+.|+++++++++
T Consensus       248 ~g~pGlRiG~~i~~~~l~  265 (402)
T TIGR03542       248 AGFTGVRLGWTVVPKELT  265 (402)
T ss_pred             cCCCCcceEEEEecHHHh
Confidence            864  6778888877665

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK02769 histidine decarboxylase; Provisional

Probab=99.76  E-value=1.1e-17  Score=150.50  Aligned_cols=164  Identities=16%  Similarity=0.225  Sum_probs=126.8

Q ss_pred             hHHHHHHHHHhHcCCC--c--EEEcCChHHHHHHHHHHccc-cCCCeEEecCCcceeeecccccccccccccccceeeee
Q psy5413         102 TCKELQEKAAKLAGKE--A--AIFVPSGTMGNLIAIMTHCD-RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRG  176 (285)
Q Consensus       102 ~~~~l~~~la~~~g~~--~--~~~~~~Gs~a~~~al~~~~~-~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~  176 (285)
                      ...++.+.+++++|.+  .  ++|+++||++|..++.++.. .++++|++++..|.+.......         .|.....
T Consensus        66 ~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~---------lg~~~~~  136 (380)
T PRK02769         66 FERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARL---------LRIKSRV  136 (380)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHH---------cCCCCce
Confidence            4557777788888864  2  48999999999998877642 3567899999999887664333         3666667


Q ss_pred             eecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC---CeEEEeCccCCh---
Q psy5413         177 VTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN---IPVHMDGARLPL---  250 (285)
Q Consensus       177 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g---i~li~Dea~~~~---  250 (285)
                      ++..+++.+|+++|+++|+++    +.+|.+|+++.+++.+ |.+.|   +++|+++|++||   +|+|+|+++++.   
T Consensus       137 V~~~~~g~id~~~L~~~i~~~----~~~t~lvv~t~gtt~t-G~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p  208 (380)
T PRK02769        137 ITSLPNGEIDYDDLISKIKEN----KNQPPIIFANIGTTMT-GAIDN---IKEIQEILKKIGIDDYYIHADAALSGMILP  208 (380)
T ss_pred             eccCCCCcCcHHHHHHHHHhC----CCCcEEEEEEeCCCCC-cccCC---HHHHHHHHHHhCCCceEEEEEecccceeec
Confidence            777678889999999999872    3358999999999999 99999   999999999998   699999998821   


Q ss_pred             -------hhhcccCCeEEEecccccCccee-EEeecCccc
Q psy5413         251 -------AEVCASVDTVMFCLSKGLGAPVG-SILAGPEEF  282 (285)
Q Consensus       251 -------~~~~~~~dv~~~s~sK~l~~p~g-g~~~~~~~~  282 (285)
                             .....++|.++++.||++++|.| |++..+++.
T Consensus       209 ~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~  248 (380)
T PRK02769        209 FVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKKY  248 (380)
T ss_pred             ccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEehhh
Confidence                   12234789999999999997543 444444443

>PLN03032 serine decarboxylase; Provisional

Probab=99.75  E-value=1.4e-17  Score=149.11  Aligned_cols=166  Identities=20%  Similarity=0.224  Sum_probs=127.7

Q ss_pred             hhHHHHHHHHHhHcCCCc----EEEcCChHHHHHHHHHHcccc-CCCeEEecCCcceeeecccccccccccccccceeee
Q psy5413         101 PTCKELQEKAAKLAGKEA----AIFVPSGTMGNLIAIMTHCDR-RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMR  175 (285)
Q Consensus       101 ~~~~~l~~~la~~~g~~~----~~~~~~Gs~a~~~al~~~~~~-~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~  175 (285)
                      ....++.+.+++++|.+.    ++|++|||+||..++.++... ++..++++...|.+..++....         +..+.
T Consensus        66 ~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~l---------g~~~~  136 (374)
T PLN03032         66 QFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMY---------RMEAV  136 (374)
T ss_pred             HHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHc---------CCCCe
Confidence            446677778888888642    399999999999999887532 3457888999998887644333         66677


Q ss_pred             eeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC-----CeEEEeCccCCh
Q psy5413         176 GVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN-----IPVHMDGARLPL  250 (285)
Q Consensus       176 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g-----i~li~Dea~~~~  250 (285)
                      .+|.++++.+|+++|+++|+++    ..++.+|+++..++.+ |.+.|   +++|+++|++||     +|+|+|+++++.
T Consensus       137 ~V~~d~~g~id~~~L~~~i~~~----~~~~~lvv~tagtt~t-G~idp---i~eI~~i~~~~g~~~~~~~lHvDaA~gg~  208 (374)
T PLN03032        137 KVPTLPSGEIDYDDLERALAKN----RDKPAILNVNIGTTVK-GAVDD---LDRILRILKELGYTEDRFYIHCDGALFGL  208 (374)
T ss_pred             EeeeCCCCcCcHHHHHHHHHHc----CCCCEEEEEEecCcCC-ccCCC---HHHHHHHHHHhCCCCCCeeEEEEccchhh
Confidence            8888888999999999999762    2257788888888888 99999   999999999997     589999998721


Q ss_pred             -h---------hhcccCCeEEEecccccCccee-EEeecCcccc
Q psy5413         251 -A---------EVCASVDTVMFCLSKGLGAPVG-SILAGPEEFI  283 (285)
Q Consensus       251 -~---------~~~~~~dv~~~s~sK~l~~p~g-g~~~~~~~~i  283 (285)
                       .         .....+|.++++.||+++.|.| |+++.+++++
T Consensus       209 ~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~  252 (374)
T PLN03032        209 MMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKHV  252 (374)
T ss_pred             hhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchhh
Confidence             1         1224689999999999887655 5555544443

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.75  E-value=3.8e-18  Score=153.04  Aligned_cols=189  Identities=19%  Similarity=0.163  Sum_probs=135.5

Q ss_pred             eeeeeccC-CcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCC-C
Q psy5413          67 RTVDIRSD-TISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRD-S  142 (285)
Q Consensus        67 ~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g-~  142 (285)
                      ..++|..+ ++..+++.+  .+    .+...|.. +...+|++.+++++|.+.  +++++|+++++..++.+++ ++| +
T Consensus        32 ~~~~l~~ne~~~~~~~~~--~~----~~~~~Yp~-~~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~-~~g~d  103 (354)
T PRK04635         32 GDIWINANESPFNNEYKL--DL----ARLNRYPE-CQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFC-EPGQD  103 (354)
T ss_pred             CcEEeeCCCCCCCCChhh--hh----HHhccCCC-CCHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhc-CCCCC
Confidence            44677644 433444432  11    12245653 347999999999998654  6888889999999999887 577 8


Q ss_pred             eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413         143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL  222 (285)
Q Consensus       143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~  222 (285)
                      +|++.++++.....   ..      ...|.+++.+|.++++.+|++.++ .+ +       ++++|++++|+||| |.++
T Consensus       104 ~vlv~~P~y~~y~~---~~------~~~g~~v~~v~~~~~~~~~~~~l~-~~-~-------~~~li~i~nP~NPT-G~~~  164 (354)
T PRK04635        104 SIACFGPTYGMYAI---SA------ETFNVGVKALPLTADYQLPLDYIE-QL-D-------GAKLVFICNPNNPT-GTVI  164 (354)
T ss_pred             eEEEcCCChHHHHH---HH------HHcCCEEEEEecCCCCCCCHHHHH-hc-c-------CCCEEEEeCCCCCC-CccC
Confidence            89988887653322   22      345889999988666778998886 33 4       68999999999999 9999


Q ss_pred             CHHHHHHHHHHHHHcCCeEEEeCccCChh------hhcc-cCC-eEEEecccccCc--ceeEEeecCccccc
Q psy5413         223 PMQWLRELKARCQEHNIPVHMDGARLPLA------EVCA-SVD-TVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       223 ~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~~-~~d-v~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      +.+++++|++.|+  +++||+||+|..+.      .+.. .-. +++.|+||+++.  .+.|+++.++++++
T Consensus       165 ~~~~l~~l~~~~~--~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~~~  234 (354)
T PRK04635        165 DRADIEQLIEMTP--DAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTLSKAFALAGARCGFTLANEELIE  234 (354)
T ss_pred             CHHHHHHHHHhCC--CcEEEEeCchHhhccCcchHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHHHHH
Confidence            9888888887765  49999999987221      1111 223 348999999873  66788888887764

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.75  E-value=2.3e-17  Score=146.94  Aligned_cols=162  Identities=22%  Similarity=0.188  Sum_probs=132.0

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecc-cccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|....|++.++++.|.+.++.++||..|+..++..++ ++||+|++.+..++.++.. ..+.      ..+|+++..+
T Consensus        61 ~nPT~~~lE~~~a~LEg~~~~~afsSGmaAI~~~~l~ll-~~GD~vl~~~~~YG~t~~~~~~~l------~~~gi~~~~~  133 (396)
T COG0626          61 GNPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALL-KAGDHVLLPDDLYGGTYRLFEKIL------QKFGVEVTFV  133 (396)
T ss_pred             CCccHHHHHHHHHHhhCCCcEEEecCcHHHHHHHHHHhc-CCCCEEEecCCccchHHHHHHHHH------HhcCeEEEEE
Confidence            578899999999999999999999999999999999887 6899999877655544432 1222      3578887766


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~  254 (285)
                      ...     +.+++++++.+.      +|++|++|.|+||+ ..+.|   |++|+++|+++|+.+++|....++   ..+.
T Consensus       134 d~~-----~~~~~~~~~~~~------~tk~v~lEtPsNP~-l~v~D---I~~i~~~A~~~g~~vvVDNTfatP~~q~PL~  198 (396)
T COG0626         134 DPG-----DDEALEAAIKEP------NTKLVFLETPSNPL-LEVPD---IPAIARLAKAYGALVVVDNTFATPVLQRPLE  198 (396)
T ss_pred             CCC-----ChHHHHHHhccc------CceEEEEeCCCCcc-ccccc---HHHHHHHHHhcCCEEEEECCcccccccChhh
Confidence            542     566777777631      79999999999999 99999   999999999999999999998833   3445


Q ss_pred             ccCCeEEEecccccCc---ceeEEeecCccc
Q psy5413         255 ASVDTVMFCLSKGLGA---PVGSILAGPEEF  282 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~  282 (285)
                      -++|+++.|.+|.++|   -++|+++++++.
T Consensus       199 ~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~  229 (396)
T COG0626         199 LGADIVVHSATKYLGGHSDVLGGVVLTPNEE  229 (396)
T ss_pred             cCCCEEEEeccccccCCcceeeeEEecChHH
Confidence            6899999999999999   677777765543

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.75  E-value=3.3e-17  Score=150.07  Aligned_cols=205  Identities=19%  Similarity=0.188  Sum_probs=135.3

Q ss_pred             eeeeeccCCcCC-Cc--HHHHHHHHhcccC------CCCccCChhHHHHHHHHHhHc----C--C--CcEEEcCChHHHH
Q psy5413          67 RTVDIRSDTISK-PT--MEMKNYMFNCEVG------DDVYLEDPTCKELQEKAAKLA----G--K--EAAIFVPSGTMGN  129 (285)
Q Consensus        67 ~~~~~~~~~~~~-~~--~~v~~a~~~~~~~------~~~y~~~~~~~~l~~~la~~~----g--~--~~~~~~~~Gs~a~  129 (285)
                      .+++|..+++.. +.  +.+.+++.+.+..      ...|....+..+|++.+++++    |  .  +.+++++|+++++
T Consensus        31 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al  110 (416)
T PRK09440         31 GAIMLGGGNPAHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAF  110 (416)
T ss_pred             CceeccCCCCCccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHH
Confidence            457888777654 22  3556666554332      135766566788999999986    3  2  3468888889999


Q ss_pred             HHHHHHccc----cCCCeEEe-cCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCC
Q psy5413         130 LIAIMTHCD----RRDSEIIV-GDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCA  203 (285)
Q Consensus       130 ~~al~~~~~----~~g~~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~  203 (285)
                      ..++.+++.    .+|+.|++ ..+++..........  ..+ ...+..++.++.+. .+.+|+++++  +.+       
T Consensus       111 ~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~d~~~l~--~~~-------  178 (416)
T PRK09440        111 FYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEE--DLF-VSYRPNIELLPEGQFKYHVDFEHLH--IDE-------  178 (416)
T ss_pred             HHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhcc--Cce-eecccccccccccccccCCCHHHcc--cCC-------
Confidence            999988774    25788888 566654332211000  000 11122333333211 2458888887  333       


Q ss_pred             ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----h--hhcc--cCC-eEEEeccccc-Cccee
Q psy5413         204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----A--EVCA--SVD-TVMFCLSKGL-GAPVG  273 (285)
Q Consensus       204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----~--~~~~--~~d-v~~~s~sK~l-~~p~g  273 (285)
                      +++++++++|+||| |.+++.+++++|+++|++||+++|+||+|...    .  ....  .-. +++.|+||.. .|.+.
T Consensus       179 ~~~~i~l~~P~NPT-G~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~pGlRi  257 (416)
T PRK09440        179 DTGAICVSRPTNPT-GNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATPLWNPNIILCMSLSKLGLPGVRC  257 (416)
T ss_pred             CceEEEEecCCCCC-CccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCccccCCeEEEecccccCCCcceE
Confidence            67999999999999 99999999999999999999999999999721    1  1111  112 3489999962 23788


Q ss_pred             EEeecCccccc
Q psy5413         274 SILAGPEEFIQ  284 (285)
Q Consensus       274 g~~~~~~~~i~  284 (285)
                      |++++++++++
T Consensus       258 G~~i~~~~l~~  268 (416)
T PRK09440        258 GIVIADEEIIE  268 (416)
T ss_pred             EEEeCCHHHHH
Confidence            89988887764

>PLN02397 aspartate transaminase

Probab=99.75  E-value=2.4e-17  Score=151.14  Aligned_cols=195  Identities=13%  Similarity=0.081  Sum_probs=133.1

Q ss_pred             eeeeeccCC-cCC-CcH----HHHHHHHhccc-C-CCCccCChhHHHHHHHHHhHcC-CC-------cE----EEcCChH
Q psy5413          67 RTVDIRSDT-ISK-PTM----EMKNYMFNCEV-G-DDVYLEDPTCKELQEKAAKLAG-KE-------AA----IFVPSGT  126 (285)
Q Consensus        67 ~~~~~~~~~-~~~-~~~----~v~~a~~~~~~-~-~~~y~~~~~~~~l~~~la~~~g-~~-------~~----~~~~~Gs  126 (285)
                      ..++++.+. ++. ..|    .+.++..+... + ...|++..+..+|++.+++++. ..       .+    +...+|+
T Consensus        49 ~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga  128 (423)
T PLN02397         49 VKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGS  128 (423)
T ss_pred             ceEecccceeeCCCCCcccchHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHH
Confidence            456777664 333 233    45555433322 2 2368888889999999999863 21       12    1223344


Q ss_pred             HHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeec-C-CCCCCCHHHHHHHhcccccccCCc
Q psy5413         127 MGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN-Q-KDGTFDLDEMEAKFSTADNIHCAS  204 (285)
Q Consensus       127 ~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~-~~~~~d~~~l~~~i~~~~~~~~~~  204 (285)
                      .++..++...+ .+||+|++++++|.......         ...|.+++.++. . +++.+|++.+++.+...    .++
T Consensus       129 ~~l~~~~~~~~-~pGd~Vlv~~P~y~~y~~~~---------~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~----~~~  194 (423)
T PLN02397        129 LRLGAEFLARF-YPGSTIYIPNPTWGNHHNIF---------RDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAA----PDG  194 (423)
T ss_pred             HHHHHHHHHHh-CCCCEEEEeCCCchhHHHHH---------HHcCCeEEEeecccCcCCccCHHHHHHHHHhC----CCC
Confidence            44555555555 49999999999876554322         244888888876 2 24578999998888641    226


Q ss_pred             eEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---------h---hcccC-CeE-EEecccccCc
Q psy5413         205 TSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---------E---VCASV-DTV-MFCLSKGLGA  270 (285)
Q Consensus       205 ~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~---~~~~~-dv~-~~s~sK~l~~  270 (285)
                      ++++++.+|+||| |.+++.+++++|+++|++||+++|+||+|..+.         .   +.... .++ +.||||.++.
T Consensus       195 ~~~i~~~~P~NPT-G~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~  273 (423)
T PLN02397        195 SFVLLHACAHNPT-GVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGL  273 (423)
T ss_pred             CEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCC
Confidence            7899999999999 999999999999999999999999999987332         1   11112 244 8999999874


Q ss_pred             --ceeEEe
Q psy5413         271 --PVGSIL  276 (285)
Q Consensus       271 --p~gg~~  276 (285)
                        .+.|++
T Consensus       274 ~G~RvG~~  281 (423)
T PLN02397        274 YGERVGAL  281 (423)
T ss_pred             ccccceEE
Confidence              677776

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.74  E-value=3e-17  Score=146.09  Aligned_cols=188  Identities=13%  Similarity=0.072  Sum_probs=134.5

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccC-C-CCccCChhHHHHHHHHHhHcC-----CCcEEEcCChHHHHHHHHHHc
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG-D-DVYLEDPTCKELQEKAAKLAG-----KEAAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~-~~y~~~~~~~~l~~~la~~~g-----~~~~~~~~~Gs~a~~~al~~~  136 (285)
                      ++.+++|..+.+.. +++.+++++.+.... . ..|. ++...+|++.++++++     .+.+++++|+++++..++.++
T Consensus        18 ~~~~i~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~Y~-~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~   96 (335)
T PRK14808         18 KRDRTYLALNENPFPFPEDLVDEVFRRLNSDTLRIYY-DSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF   96 (335)
T ss_pred             CCceeEecCCCCCCCCCHHHHHHHHHHhhhhhhhcCC-CCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHh
Confidence            45778888655444 677899998775543 2 3344 4568899999999987     234688888899999988775


Q ss_pred             cccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCC
Q psy5413         137 CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNY  216 (285)
Q Consensus       137 ~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~  216 (285)
                           +.|++.+++|.......         ...|.+++.++.++++.++...    + .       ++++|++++|+||
T Consensus        97 -----d~v~v~~P~y~~~~~~~---------~~~g~~~~~v~~~~~~~~~~~~----~-~-------~~~~i~i~nP~NP  150 (335)
T PRK14808         97 -----DRSVFFPPTYSCYRIFA---------KAVGAKFLEVPLTKDLRIPEVN----V-G-------EGDVVFIPNPNNP  150 (335)
T ss_pred             -----CcEEECCCCHHHHHHHH---------HHcCCeEEEecCCCcCCCChhH----c-c-------CCCEEEEeCCCCC
Confidence                 45888888775544322         3458899999886665444221    2 2       4589999999999


Q ss_pred             CCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccC-CeE-EEecccccCc--ceeEEeecCccccc
Q psy5413         217 CGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASV-DTV-MFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       217 ~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~-dv~-~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      | |.+++.+++++|+    +++++||+||+|..+.     ...... .++ +.|+||.++.  .+.|++++++++++
T Consensus       151 T-G~~~s~~~l~~l~----~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~~  222 (335)
T PRK14808        151 T-GHVFEREEIERIL----KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFID  222 (335)
T ss_pred             C-CCCcCHHHHHHHH----hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhccCcccceEEEEeCHHHHH
Confidence            9 9999977776665    4899999999987321     111222 344 8999999883  77789998887764

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.74  E-value=4e-17  Score=151.98  Aligned_cols=177  Identities=18%  Similarity=0.214  Sum_probs=125.2

Q ss_pred             CCccCChhHHHHHHHHHhHc----C-C--------------CcEEEcCChHHHHHHHHHHccccC---------------
Q psy5413          95 DVYLEDPTCKELQEKAAKLA----G-K--------------EAAIFVPSGTMGNLIAIMTHCDRR---------------  140 (285)
Q Consensus        95 ~~y~~~~~~~~l~~~la~~~----g-~--------------~~~~~~~~Gs~a~~~al~~~~~~~---------------  140 (285)
                      ..+..+|...++|+.+.+++    + .              ..++++++||+||..|+.++..+.               
T Consensus       119 ~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl  198 (522)
T TIGR03799       119 VKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGL  198 (522)
T ss_pred             ceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccc
Confidence            45557788889998887775    2 1              125899999999999999876421               


Q ss_pred             ----------CCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413         141 ----------DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCV  210 (285)
Q Consensus       141 ----------g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i  210 (285)
                                +..|++++..|.+..++..+.      .....+++.+|.++++.+|+++|+++|+++.+. +.++-+|+.
T Consensus       199 ~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~l------glg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~-g~~~~~vva  271 (522)
T TIGR03799       199 FAALKHYGYDGLAILVSERGHYSLGKAADVL------GIGRDNLIAIKTDANNRIDVDALRDKCAELAEQ-NIKPLAIVG  271 (522)
T ss_pred             hhhhhhccCCceEEEECCCchHHHHHHHHHc------CCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHC-CCCcEEEEE
Confidence                      124777889998887644433      111226888888888999999999999753222 112233333


Q ss_pred             ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhhh----------cccCCeEEEecccccCccee-EEe-ec
Q psy5413         211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEV----------CASVDTVMFCLSKGLGAPVG-SIL-AG  278 (285)
Q Consensus       211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~~----------~~~~dv~~~s~sK~l~~p~g-g~~-~~  278 (285)
                      ...++.+ |.+.|   |++|+++|+++|+|+|+|++|++...+          .+++|+++++.|||+++|.| |++ +.
T Consensus       272 taGtt~t-GaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr  347 (522)
T TIGR03799       272 VAGTTET-GNIDP---LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFK  347 (522)
T ss_pred             EecCcCC-CCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEe
Confidence            3344455 99999   999999999999999999999832211          14789999999999999765 444 44


Q ss_pred             Cccc
Q psy5413         279 PEEF  282 (285)
Q Consensus       279 ~~~~  282 (285)
                      ++++
T Consensus       348 ~~~~  351 (522)
T TIGR03799       348 DPAL  351 (522)
T ss_pred             CHHH
Confidence            4443

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PRK07908 hypothetical protein; Provisional

Probab=99.74  E-value=3.3e-17  Score=146.72  Aligned_cols=191  Identities=13%  Similarity=0.075  Sum_probs=135.5

Q ss_pred             CCeeeeeccCCc-CCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCC
Q psy5413          65 NIRTVDIRSDTI-SKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRD  141 (285)
Q Consensus        65 ~~~~~~~~~~~~-~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g  141 (285)
                      +..++||..+.. ..+++.+++++.+.......|.......++++.++++++.+  .+++++|+++++..++.  + +++
T Consensus        21 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~--l-~~~   97 (349)
T PRK07908         21 GPGLLDFAVNVRHDTPPEWLRERLAARLGDLAAYPSTEDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR--L-RPR   97 (349)
T ss_pred             CCCeEEecCCCCCCCCCHHHHHHHHHHhhHhhcCCCccchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh--c-CCC
Confidence            457899986554 45677899998876544445765557889999999999754  45899999999988887  4 355


Q ss_pred             CeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeee
Q psy5413         142 SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTV  221 (285)
Q Consensus       142 ~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~  221 (285)
                      + +++..+++.....   ..      +..|.+++.++.++++.+|++++    ++       +++++++++|+||| |.+
T Consensus        98 ~-viv~~P~y~~~~~---~~------~~~G~~i~~v~~~~~~~~d~~~l----~~-------~~~~i~l~np~NPT-G~~  155 (349)
T PRK07908         98 R-AAVVHPSFTEPEA---AL------RAAGIPVHRVVLDPPFRLDPAAV----PD-------DADLVVIGNPTNPT-SVL  155 (349)
T ss_pred             e-EEEeCCCChHHHH---HH------HHcCCEEEeeccCcccCcChhHh----cc-------CCCEEEEcCCCCCC-CCC
Confidence            4 5555555443322   22      34588999998865566787743    34       67899999999999 999


Q ss_pred             CCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhc--ccCCeE-EEecccccC--cceeEEeecCccccc
Q psy5413         222 LPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVC--ASVDTV-MFCLSKGLG--APVGSILAGPEEFIQ  284 (285)
Q Consensus       222 ~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~--~~~dv~-~~s~sK~l~--~p~gg~~~~~~~~i~  284 (285)
                      ++.   ++|.++|+ ++.++|+||+|..+.     .+.  ...+++ +.|+||.++  |.+.|+++.++++++
T Consensus       156 ~~~---~~l~~l~~-~~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~~  224 (349)
T PRK07908        156 HPA---EQLLALRR-PGRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKTWSLAGLRVGYALGAPDVLA  224 (349)
T ss_pred             cCH---HHHHHHHh-cCCEEEEECcchhhccCCccccccccCCCEEEEeecccccCCccceeeeeecCHHHHH
Confidence            995   45666675 578999999986211     111  122444 779999876  477889988877764

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.74  E-value=1.7e-17  Score=149.28  Aligned_cols=158  Identities=18%  Similarity=0.146  Sum_probs=119.7

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      ++|...+|++.++++. .+..+++.+|++|+..++.+++ ++||+|++.++.|..+.... ...      ...|++++.+
T Consensus        49 ~~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all-~~Gd~Vl~~~~~y~~~~~~~~~~l------~~~G~~v~~v  120 (366)
T PRK07582         49 SNPTWRALEAALGELE-GAEALVFPSGMAAITAVLRALL-RPGDTVVVPADGYYQVRALAREYL------APLGVTVREA  120 (366)
T ss_pred             CCccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhc-CCCCEEEEeCCCcHhHHHHHHHHH------hcCeEEEEEE
Confidence            5778999999999999 5678889999999999998876 69999999776654432211 011      2358888888


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC---Chhhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL---PLAEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~---~~~~~~  254 (285)
                      +..+..    +    .+.+       ++++|++++|+||+ |.+.+   +++|+++|+++|+++++|++|.   +...+.
T Consensus       121 ~~~~~~----~----~~~~-------~t~lV~le~p~NPt-g~v~d---i~~I~~~a~~~g~~lvVD~t~~~~~~~~p~~  181 (366)
T PRK07582        121 PTAGMA----E----AALA-------GADLVLAETPSNPG-LDVCD---LAALAAAAHAAGALLVVDNTTATPLGQRPLE  181 (366)
T ss_pred             CCCChH----H----Hhcc-------CceEEEEECCCCCC-CCccC---HHHHHHHHHHcCCEEEEECCCCCccccCchh
Confidence            763221    1    2223       78999999999999 88888   9999999999999999999986   222333


Q ss_pred             ccCCeEEEecccccCc---ceeEEeec-Ccccc
Q psy5413         255 ASVDTVMFCLSKGLGA---PVGSILAG-PEEFI  283 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~---p~gg~~~~-~~~~i  283 (285)
                      .++|+++.|++|+++|   .++|+++. +++++
T Consensus       182 ~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~  214 (366)
T PRK07582        182 LGADLVVASDTKALTGHSDLLLGYVAGRDPELM  214 (366)
T ss_pred             cCCcEEEecccccccCCCCeeEEEEEcCcHHHH
Confidence            4789999999999987   34677775 45544

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.74  E-value=4.8e-17  Score=146.26  Aligned_cols=193  Identities=12%  Similarity=0.034  Sum_probs=135.7

Q ss_pred             eeeeeccC-CcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCCe
Q psy5413          67 RTVDIRSD-TISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDSE  143 (285)
Q Consensus        67 ~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~~  143 (285)
                      .+++|..+ ++..+++.+.+++.+.......|.. +...+|++.++++++.+  .+++++|+++++..++.++.  +|+.
T Consensus        23 ~~i~l~~~~n~~~~~~~~~~a~~~~~~~~~~Y~~-~~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l~--~g~~   99 (360)
T PRK07392         23 AILDFSASINPLGPPESVIAAIQSALSALRHYPD-PDYRELRLALAQHHQLPPEWILPGNGAAELLTWAGRELA--QLRA   99 (360)
T ss_pred             cEEEeCCcCCCCCCCHHHHHHHHHHHHHhhcCCC-cCHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhC--CCCe
Confidence            56888865 6666788999998765544445653 44679999999998654  46888888999998888743  5788


Q ss_pred             EEecCCcceeeecccccccccccccccceeeeeeecCCCCC-----CCHHHHHHHhcccccccCCceEEEEEecccCCCC
Q psy5413         144 IIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGT-----FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCG  218 (285)
Q Consensus       144 vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~g  218 (285)
                      |+++++++.....   ..      ...|.+++.++.++++.     .+++++++.. .       +++++++++|+||| 
T Consensus       100 vlv~~P~y~~~~~---~~------~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~l~nP~NPT-  161 (360)
T PRK07392        100 VYLITPAFGDYRR---AL------RAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-T-------PNDGLLLNNPHNPT-  161 (360)
T ss_pred             EEEECCCcHHHHH---HH------HHcCCeEEEEecccccCCcccccCHHHHHHhc-c-------CCCEEEEeCCCCCC-
Confidence            9988887654433   22      34588998888754432     3566655443 2       57899999999999 


Q ss_pred             eeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---------hhcccC-CeE-EEecccccCc--ceeEEeecCccccc
Q psy5413         219 GTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---------EVCASV-DTV-MFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       219 G~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~~~~-dv~-~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      |.+++.   ++|.++++++++ +|+||+|..+.         ...... .++ +.|+||.++.  .+.|+++.++++++
T Consensus       162 G~~~~~---~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~  236 (360)
T PRK07392        162 GKLWSR---EAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQ  236 (360)
T ss_pred             CCCcCH---HHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHHHH
Confidence            899994   556666778885 66799987221         111222 344 8999998873  77888888777654

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.74  E-value=4.1e-17  Score=160.11  Aligned_cols=166  Identities=14%  Similarity=0.134  Sum_probs=137.2

Q ss_pred             hhHHHHHHHHHhHcCCCcEEEcCChH----HHHHHHHHHccccCCC----eEEecCCcceeeecccccccccccccccce
Q psy5413         101 PTCKELQEKAAKLAGKEAAIFVPSGT----MGNLIAIMTHCDRRDS----EIIVGDCSHIMLWEQGGASQTSVYSQIGRV  172 (285)
Q Consensus       101 ~~~~~l~~~la~~~g~~~~~~~~~Gs----~a~~~al~~~~~~~g~----~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~  172 (285)
                      ..+.++++.+++++|.+.+.|+.+++    +++..+++.+...+|+    +||++...|.+......+         .|.
T Consensus       568 ~~~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~---------~G~  638 (993)
T PLN02414        568 EMFEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAM---------CGM  638 (993)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHH---------CCC
Confidence            44789999999999999888888877    8999999988754477    788899999876542223         489


Q ss_pred             eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----
Q psy5413         173 LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL----  248 (285)
Q Consensus       173 ~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~----  248 (285)
                      +++.++.++++.+|+++|+++|++    +.+++++|++++|+|.+ |...|   +++|+++||++|+++++|.++.    
T Consensus       639 ~vv~v~~d~~G~vDle~L~~~i~~----~~~~ta~V~vt~pSn~g-g~e~~---I~eI~~iah~~Galv~vDgAq~~a~~  710 (993)
T PLN02414        639 KIVVVGTDAKGNINIEELRKAAEA----HKDNLAALMVTYPSTHG-VYEEG---IDEICDIIHDNGGQVYMDGANMNAQV  710 (993)
T ss_pred             EEEEeccCCCCCcCHHHHHHHHhc----cCCCeEEEEEECCCccc-cccch---HHHHHHHHHHcCCEEEEEecCHHhcc
Confidence            999999878889999999999986    33379999999999997 88888   9999999999999999999986    


Q ss_pred             Chhh-hcccCCeEEEecccccCcce------eEEeecCcccc
Q psy5413         249 PLAE-VCASVDTVMFCLSKGLGAPV------GSILAGPEEFI  283 (285)
Q Consensus       249 ~~~~-~~~~~dv~~~s~sK~l~~p~------gg~~~~~~~~i  283 (285)
                      ++.. ...++|+++++.||+|++|.      .|+++.+++++
T Consensus       711 ~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~  752 (993)
T PLN02414        711 GLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLA  752 (993)
T ss_pred             CcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhc
Confidence            2222 24689999999999988755      57777777654

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.74  E-value=6.8e-17  Score=150.23  Aligned_cols=185  Identities=20%  Similarity=0.217  Sum_probs=133.3

Q ss_pred             CcHHHHHHHHhcc--cCCCCccC-------ChhHHHHHHHHHhHcCCCcE-EEcCChHHHHHHHHHH---ccccCCC---
Q psy5413          79 PTMEMKNYMFNCE--VGDDVYLE-------DPTCKELQEKAAKLAGKEAA-IFVPSGTMGNLIAIMT---HCDRRDS---  142 (285)
Q Consensus        79 ~~~~v~~a~~~~~--~~~~~y~~-------~~~~~~l~~~la~~~g~~~~-~~~~~Gs~a~~~al~~---~~~~~g~---  142 (285)
                      ..|.+.+++.+..  .+...|.+       .+...++++.+++++|.+.+ ++.++|+.+...++.+   +...+|+   
T Consensus        82 ~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~  161 (481)
T PRK04366         82 YNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKR  161 (481)
T ss_pred             CCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCC
Confidence            5667888877652  23445521       13366788888999998776 5556777666554332   2224554   


Q ss_pred             -eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeee
Q psy5413         143 -EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTV  221 (285)
Q Consensus       143 -~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~  221 (285)
                       +|+++++.|.+.....         ...|.+++.++.++++.+|+++|++++++       ++++|++++|+ ++ |.+
T Consensus       162 ~~Vlv~~~~hp~~~~~~---------~~~G~~vv~v~~~~~~~~D~e~L~~~i~~-------~t~~V~v~~Pn-~t-G~~  223 (481)
T PRK04366        162 TEVIVPDSAHGTNPASA---------AMAGFKVVEIPSNEDGLVDLEALKAAVGE-------DTAALMLTNPN-TL-GLF  223 (481)
T ss_pred             CEEEEcCCccHhHHHHH---------HHcCCEEEEeecCCCCCcCHHHHHhhccc-------CCeEEEEeCCC-Cc-ccc
Confidence             7999998887665432         34588999998877788999999999987       78999999988 77 654


Q ss_pred             CCHHHHHHHHHHHHHcCCeEEEeCccC-C---hh-hhcccCCeEEEecccccCcc------eeEEeecCcccc
Q psy5413         222 LPMQWLRELKARCQEHNIPVHMDGARL-P---LA-EVCASVDTVMFCLSKGLGAP------VGSILAGPEEFI  283 (285)
Q Consensus       222 ~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~-~~~~~~dv~~~s~sK~l~~p------~gg~~~~~~~~i  283 (285)
                        .+++++|+++|+++|+++++|+++. +   .. ....++|+++++.||||++|      .+|+++.+++++
T Consensus       224 --~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~  294 (481)
T PRK04366        224 --ERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELA  294 (481)
T ss_pred             --chHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhH
Confidence              2249999999999999999999986 2   11 22358999999999999864      446777666554

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.74  E-value=4.3e-17  Score=148.77  Aligned_cols=184  Identities=14%  Similarity=0.032  Sum_probs=135.0

Q ss_pred             CCCcHHHHHHHHhcccCC-CCcc----CChhHHHHHHHHHhHcCCC----cEE--EcCChHHHHHHHHHHcccc------
Q psy5413          77 SKPTMEMKNYMFNCEVGD-DVYL----EDPTCKELQEKAAKLAGKE----AAI--FVPSGTMGNLIAIMTHCDR------  139 (285)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~-~~y~----~~~~~~~l~~~la~~~g~~----~~~--~~~~Gs~a~~~al~~~~~~------  139 (285)
                      +.++|++.+++.+..... ..+.    ......++++.+++++|.+    ...  ++++||+||..++.++..+      
T Consensus        51 t~~~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~  130 (431)
T TIGR01788        51 TWMEPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRME  130 (431)
T ss_pred             CCCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHH
Confidence            446788888876655311 1111    1144566667778888876    233  4799999999999776421      


Q ss_pred             -CC-----CeEEecCCcceeeecccccccccccccccceeeeeeecCCC-CCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         140 -RD-----SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD-GTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       140 -~g-----~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                       .|     ..|++++..|.++.+....         .|.++..+|.+++ +.+|+++|+++|++       ++.+|++..
T Consensus       131 ~~g~~~~~~~ii~s~~~H~sv~ka~~~---------lg~~v~~i~~d~~~~~vd~~~L~~~i~~-------~t~lV~~t~  194 (431)
T TIGR01788       131 AAGKPTDKPNLVMGSNVQVCWEKFARY---------FDVELREVPMDPGRYVIDPEQVVEAVDE-------NTIGVVCIL  194 (431)
T ss_pred             hcCCCCCCcEEEEcCcchHHHHHHHHH---------cCceeEEEecCCCceeeCHHHHHHHHhh-------CCeEEEEEe
Confidence             11     2588899999887664333         3778888888665 47999999999987       788999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHc------CCeEEEeCccCChh-----------hhcccCCeEEEecccccCccee-E
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEH------NIPVHMDGARLPLA-----------EVCASVDTVMFCLSKGLGAPVG-S  274 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~------gi~li~Dea~~~~~-----------~~~~~~dv~~~s~sK~l~~p~g-g  274 (285)
                      .++.+ |.+.|   +++|+++|+++      |+|+|+|.+|++..           ...+++|.++++.|||+.+|.| |
T Consensus       195 g~t~t-G~idp---i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G  270 (431)
T TIGR01788       195 GTTYT-GEYED---VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPGVG  270 (431)
T ss_pred             CCCCC-cccCC---HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCCcE
Confidence            99999 99999   99999999999      99999999998211           1135678899999999867654 5


Q ss_pred             Eee-cCc
Q psy5413         275 ILA-GPE  280 (285)
Q Consensus       275 ~~~-~~~  280 (285)
                      ++. .++
T Consensus       271 ~l~~r~~  277 (431)
T TIGR01788       271 WVIWRDE  277 (431)
T ss_pred             EEEEeCh
Confidence            544 443

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.73  E-value=2.7e-17  Score=148.12  Aligned_cols=170  Identities=17%  Similarity=0.132  Sum_probs=126.7

Q ss_pred             CCccCChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCC-CeEEecCCcceeeecccccccccccccccc
Q psy5413          95 DVYLEDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRD-SEIIVGDCSHIMLWEQGGASQTSVYSQIGR  171 (285)
Q Consensus        95 ~~y~~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g-~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g  171 (285)
                      ..|. ++...+|++.++++++.+.  +++++|+++++..++.+++ .+| +.|+++++++.....   ..      +..|
T Consensus        54 ~~Y~-~~~~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~-~~g~~~vlv~~p~y~~~~~---~~------~~~g  122 (364)
T PRK04781         54 RRYP-DPQPPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALC-VPGRDAVLVTPPVFGMYAV---CA------RLQN  122 (364)
T ss_pred             ccCC-CCCHHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhc-CCCCCeEEEcCCChHHHHH---HH------HHcC
Confidence            3454 3447899999999998654  5788888999999998877 477 688888877643322   22      3458


Q ss_pred             eeeeeeecCC---CCCCCHHHHHHHh-cccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCcc
Q psy5413         172 VLMRGVTNQK---DGTFDLDEMEAKF-STADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGAR  247 (285)
Q Consensus       172 ~~~~~~~~~~---~~~~d~~~l~~~i-~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~  247 (285)
                      .+++.++..+   ...+|++++++.+ +.       ++++|++++|+||| |.+++.+.++++++.|+ +++++|+||+|
T Consensus       123 ~~~~~v~~~~~~~~~~~d~~~l~~~~~~~-------~~~lv~l~~p~NPT-G~~~~~~~~~~l~~~~~-~~~~iI~Deay  193 (364)
T PRK04781        123 APLVEVPLVDGADGFHADVPAIVAAALAS-------NAKLVFLCSPSNPA-GSAIALDQIERALQALQ-GKALVVVDEAY  193 (364)
T ss_pred             CEEEEEecCCCccCCCcCHHHHHHHHhcc-------CCeEEEEcCCCCCC-CCCcCHHHHHHHHHhCC-CCcEEEEeCcc
Confidence            8888888632   2357888886654 34       78999999999999 99999999999998875 58999999998


Q ss_pred             CChh------hhcccC-CeE-EEecccccC--cceeEEeecCccccc
Q psy5413         248 LPLA------EVCASV-DTV-MFCLSKGLG--APVGSILAGPEEFIQ  284 (285)
Q Consensus       248 ~~~~------~~~~~~-dv~-~~s~sK~l~--~p~gg~~~~~~~~i~  284 (285)
                      ..+.      ...... .++ +.||||.++  |.+.|++++++++++
T Consensus       194 ~~f~~~~~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~  240 (364)
T PRK04781        194 GEFSDVPSAVGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELIA  240 (364)
T ss_pred             hhhcCCcchHHHHhhCCCEEEEecChhhcccccceeeeeeCCHHHHH
Confidence            7221      122222 344 999999887  478889999888764

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.73  E-value=1.3e-16  Score=147.48  Aligned_cols=191  Identities=16%  Similarity=0.135  Sum_probs=129.5

Q ss_pred             eccCCcCCCcHHHHHHHHhccc-----C---CCCccCChhHHHHHH----HHHhHcCCCc-EEE----cCChHHHHHHHH
Q psy5413          71 IRSDTISKPTMEMKNYMFNCEV-----G---DDVYLEDPTCKELQE----KAAKLAGKEA-AIF----VPSGTMGNLIAI  133 (285)
Q Consensus        71 ~~~~~~~~~~~~v~~a~~~~~~-----~---~~~y~~~~~~~~l~~----~la~~~g~~~-~~~----~~~Gs~a~~~al  133 (285)
                      ..++|+.  ++.+++++.....     +   ...|+....+.++|+    +.+++++.+. .+.    ..||+.||+.++
T Consensus        40 iasen~~--s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~  117 (475)
T PLN03226         40 IASENFT--SRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVY  117 (475)
T ss_pred             ecCCccC--CHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHH
Confidence            3566654  8889888876662     2   234444556777776    4455566554 332    489999999999


Q ss_pred             HHccccCCCeEEecC------Ccceeeecccccccccccccccceeee--eeecC-CCCCCCHHHHHHHhcccccccCCc
Q psy5413         134 MTHCDRRDSEIIVGD------CSHIMLWEQGGASQTSVYSQIGRVLMR--GVTNQ-KDGTFDLDEMEAKFSTADNIHCAS  204 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~------~~h~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~  204 (285)
                      .+++ ++||.|+..+      .+|.+......++       ..+..+.  .++.+ +++.+|+++|++++.+.      +
T Consensus       118 ~aL~-~pgD~Il~~d~~~gGhl~H~~~~~g~~~s-------~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~------~  183 (475)
T PLN03226        118 TALL-QPHDRIMGLDLPHGGHLSHGYQTDGKKIS-------ATSIYFESMPYRLDESTGLIDYDKLEKKAMLF------R  183 (475)
T ss_pred             HHhC-CCCCEEEECCCCcCcchhhhhhhcccccc-------cceEEEEeeeeeecCCCCCcCHHHHHHHHhhc------C
Confidence            9988 6999998744      3344332222222       1122211  22222 46779999999998752      5


Q ss_pred             eEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEee
Q psy5413         205 TSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILA  277 (285)
Q Consensus       205 ~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~  277 (285)
                      +++|++. .++.  +...|   +++|+++|+++|+++++|++|+ ++.      ....++|++++|+||||+||.||+++
T Consensus       184 pklIv~~-~S~~--s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~GP~Gg~I~  257 (475)
T PLN03226        184 PKLIIAG-ASAY--PRDWD---YARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPRGGMIF  257 (475)
T ss_pred             CeEEEEe-cCcC--CCccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCcccccCCCceEEE
Confidence            6666652 2332  67788   8999999999999999999988 322      11247999999999999999999999


Q ss_pred             cCcccc
Q psy5413         278 GPEEFI  283 (285)
Q Consensus       278 ~~~~~i  283 (285)
                      .+++++
T Consensus       258 ~~~~~~  263 (475)
T PLN03226        258 FRKGPK  263 (475)
T ss_pred             Echhhc
Confidence            877543

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.73  E-value=2.4e-17  Score=146.63  Aligned_cols=165  Identities=11%  Similarity=0.082  Sum_probs=122.1

Q ss_pred             CCccCChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccce
Q psy5413          95 DVYLEDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRV  172 (285)
Q Consensus        95 ~~y~~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~  172 (285)
                      ..|. ++...+|++.+++++|.+.  +++++|+++++..++.. + .+|+ +++.++++.....   ..      +..|.
T Consensus        35 ~~Yp-~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~-~-~~~~-vv~~~P~y~~y~~---~~------~~~G~  101 (332)
T PRK06425         35 SIYP-EISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSY-I-NVGN-IIIVEPNFNEYKG---YA------FTHGI  101 (332)
T ss_pred             ccCc-CcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHH-h-CCCc-EEEeCCChHHHHH---HH------HHcCC
Confidence            4554 5668999999999998754  57888889999888864 5 4665 5555666544433   22      34589


Q ss_pred             eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-
Q psy5413         173 LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-  251 (285)
Q Consensus       173 ~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-  251 (285)
                      +++.+|.+. ...|.+.+++   .       ++++|++++|+||| |.+++.+++++|+++|++||+++|+||+|..+. 
T Consensus       102 ~v~~vp~~~-~~~~~~~l~~---~-------~~k~v~l~nP~NPT-G~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~  169 (332)
T PRK06425        102 RISALPFNL-INNNPEILNN---Y-------NFDLIFIVSPDNPL-GNLISRDSLLTISEICRKKGALLFIDEAFIDFVP  169 (332)
T ss_pred             eEEEEeCCc-ccCcHHHHhh---c-------CCCEEEEeCCCCCc-CCccCHHHHHHHHHHHHHcCCEEEEecchhcccc
Confidence            999998743 3345444431   2       67899999999999 899999999999999999999999999987221 


Q ss_pred             -------hhcccC-CeE-EEecccccCc--ceeEEeecCccccc
Q psy5413         252 -------EVCASV-DTV-MFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       252 -------~~~~~~-dv~-~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                             ...... .++ +.||||.++.  .+.|++++++++++
T Consensus       170 ~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li~  213 (332)
T PRK06425        170 NRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYNMK  213 (332)
T ss_pred             ccchhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCHHHHH
Confidence                   111222 344 8999998874  67789998888764

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.73  E-value=2.9e-17  Score=145.95  Aligned_cols=186  Identities=16%  Similarity=0.084  Sum_probs=129.5

Q ss_pred             CeeeeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCCe
Q psy5413          66 IRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDSE  143 (285)
Q Consensus        66 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~~  143 (285)
                      +..++|..+.+..+.| ..+   ........|.... ..++++.+++++|.+  ..++++|+++++..+..+ + .+| .
T Consensus        17 ~~~~~~~~~~~~~~~~-~~~---~~~~~~~~y~~~~-~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~-l-~~g-~   88 (330)
T TIGR01140        17 EDWLDFSTGINPLGPP-VPP---IPASAWARYPDPE-YDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRL-L-APG-R   88 (330)
T ss_pred             hheeEccccCCCCCCC-hhh---cchHHHhhCCCcc-HHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH-h-CCC-e
Confidence            4567777665555544 211   1111224455433 699999999999864  457777777777776554 4 467 5


Q ss_pred             EEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCC
Q psy5413         144 IIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLP  223 (285)
Q Consensus       144 vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~  223 (285)
                      |++.+++|.....   ..      ...|.+++.++       |++++++.+ +       ++++|++++|+||+ |.+++
T Consensus        89 vl~~~p~y~~~~~---~~------~~~g~~~~~~~-------d~~~l~~~~-~-------~~~~v~i~~p~NPt-G~~~~  143 (330)
T TIGR01140        89 VLVLAPTYSEYAR---AW------RAAGHEVVELP-------DLDRLPAAL-E-------ELDVLVLCNPNNPT-GRLIP  143 (330)
T ss_pred             EEEeCCCcHHHHH---HH------HHcCCEEEEeC-------CHHHHHhhc-c-------cCCEEEEeCCCCCC-CCCCC
Confidence            7777766543322   22      34477777765       789999888 3       46789999999999 99999


Q ss_pred             HHHHHHHHHHHHHcCCeEEEeCccCCh------hhhcc--cCCeEEEecccccCc--ceeEEeecCccccc
Q psy5413         224 MQWLRELKARCQEHNIPVHMDGARLPL------AEVCA--SVDTVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       224 ~~~l~~i~~la~~~gi~li~Dea~~~~------~~~~~--~~dv~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      .+++++|+++|++||+++|+||+|..+      .....  ..++++.|+||+++.  .+.|+++.++++++
T Consensus       144 ~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~  214 (330)
T TIGR01140       144 PETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPALLA  214 (330)
T ss_pred             HHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEecchhhcCchhhhhheeCCHHHHH
Confidence            999999999999999999999998621      11111  223669999999885  45577888777654

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>KOG0053|consensus

Probab=99.72  E-value=4.9e-17  Score=143.33  Aligned_cols=163  Identities=18%  Similarity=0.106  Sum_probs=131.4

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT  178 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~  178 (285)
                      .+|....+++.++++.|.+.++.++||..|+..++..++ +.|+++++.+..|.-+.....     .+...+|.+...+.
T Consensus        75 ~nPt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~-~~g~~iV~~~~~Y~gT~~~l~-----~~~~~~gie~~~vd  148 (409)
T KOG0053|consen   75 GNPTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLL-PAGDHIVATGDVYGGTLRILR-----KFLPKFGGEGDFVD  148 (409)
T ss_pred             CCCchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhc-CCCCcEEEeCCCcccHHHHHH-----HHHHHhCceeeeec
Confidence            478899999999999999999999999999999999987 689988876544433322110     11134566666665


Q ss_pred             cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---hhcc
Q psy5413         179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---EVCA  255 (285)
Q Consensus       179 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---~~~~  255 (285)
                      .+     +++++++++++       +|++|.+|.|+||. ..+.|   |++|+++||++|+++++|+..+++.   .+.-
T Consensus       149 ~~-----~~~~~~~~i~~-------~t~~V~~ESPsNPl-l~v~D---I~~l~~la~~~g~~vvVDnTf~~p~~~~pL~l  212 (409)
T KOG0053|consen  149 VD-----DLKKILKAIKE-------NTKAVFLESPSNPL-LKVPD---IEKLARLAHKYGFLVVVDNTFGSPYNQDPLPL  212 (409)
T ss_pred             hh-----hHHHHHHhhcc-------CceEEEEECCCCCc-ccccc---HHHHHHHHhhCCCEEEEeCCcCcccccChhhc
Confidence            43     78899999988       89999999999999 99999   9999999999999999999988542   3334


Q ss_pred             cCCeEEEecccccCc---ceeEEeecC-cccc
Q psy5413         256 SVDTVMFCLSKGLGA---PVGSILAGP-EEFI  283 (285)
Q Consensus       256 ~~dv~~~s~sK~l~~---p~gg~~~~~-~~~i  283 (285)
                      ++|+++.|.+|+++|   -+||.++.+ +++.
T Consensus       213 GADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~  244 (409)
T KOG0053|consen  213 GADIVVHSATKYIGGHSDVIGGSVVLNSEELA  244 (409)
T ss_pred             CCCEEEEeeeeeecCCcceeeeEEecCcHHHH
Confidence            799999999999999   678888775 5543

>PRK08637 hypothetical protein; Provisional

Probab=99.72  E-value=1.4e-16  Score=144.67  Aligned_cols=186  Identities=12%  Similarity=0.016  Sum_probs=129.9

Q ss_pred             CcHHHHHHHHhccc-CCCCccCChhHHHHHHHHHhHcC-----C-----CcEEEcCChHHHHHHHHHHccccCCCeEEec
Q psy5413          79 PTMEMKNYMFNCEV-GDDVYLEDPTCKELQEKAAKLAG-----K-----EAAIFVPSGTMGNLIAIMTHCDRRDSEIIVG  147 (285)
Q Consensus        79 ~~~~v~~a~~~~~~-~~~~y~~~~~~~~l~~~la~~~g-----~-----~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~  147 (285)
                      ..+.+.+++.+... ....|+...+..+|++.+++++.     .     +.+++++|+++++..++.+++ .+||.|+++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~Vlv~   99 (388)
T PRK08637         21 YLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFV-DQGDTVLLP   99 (388)
T ss_pred             hHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhc-CCCCEEEEc
Confidence            45555565554222 23567766778889999987641     1     234788888999999999887 699999999


Q ss_pred             CCcceeeecccccccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHH
Q psy5413         148 DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW  226 (285)
Q Consensus       148 ~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~  226 (285)
                      +++|.......  .      ...|.+++.++.. +++.+|++++++.++..   .....+++++++|+||| |.+++.++
T Consensus       100 ~P~y~~~~~~~--~------~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~---~~~~~~~~~~~~P~NPT-G~~~s~~~  167 (388)
T PRK08637        100 DHNWGNYKLTF--N------TRRGAEIVTYPIFDEDGGFDTDALKEALQAA---YNKGKVIVILNFPNNPT-GYTPTEKE  167 (388)
T ss_pred             CCCCccHHHHH--H------HhcCCEEEEecccCCCCcCCHHHHHHHHHhh---ccCCCEEEEEeCCCCCC-CCCCCHHH
Confidence            88765443211  1      1248888888863 44568999999988610   01145678888899999 99999999


Q ss_pred             HHHHHHHHHH-----cCCeEEEeCccCCh-----------hhhcccC-CeE---EEecccccCc--ceeEEee
Q psy5413         227 LRELKARCQE-----HNIPVHMDGARLPL-----------AEVCASV-DTV---MFCLSKGLGA--PVGSILA  277 (285)
Q Consensus       227 l~~i~~la~~-----~gi~li~Dea~~~~-----------~~~~~~~-dv~---~~s~sK~l~~--p~gg~~~  277 (285)
                      +++|+++|++     ||+++|+||+|..+           ..+.... .++   +.|+||.++.  .+.|+++
T Consensus       168 ~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~  240 (388)
T PRK08637        168 ATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFIT  240 (388)
T ss_pred             HHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEE
Confidence            9999999886     99999999997622           1111111 332   3499996554  6777776

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.72  E-value=2.4e-16  Score=143.92  Aligned_cols=193  Identities=21%  Similarity=0.217  Sum_probs=134.7

Q ss_pred             eeccCCcCCCcHHHHHHHHhcccC--------CCCccCChhHHHHH----HHHHhHcCCCcE-EEcCChHHHHHHHHHHc
Q psy5413          70 DIRSDTISKPTMEMKNYMFNCEVG--------DDVYLEDPTCKELQ----EKAAKLAGKEAA-IFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        70 ~~~~~~~~~~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~----~~la~~~g~~~~-~~~~~Gs~a~~~al~~~  136 (285)
                      ...++|+.  +|.+++++...+.+        ...|+......+++    ++..++||.+.+ +-..||+.||.+++.++
T Consensus        54 LiasEN~~--s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~anvqp~Sg~~An~~v~~al  131 (493)
T PRK13580         54 LIASENYS--SLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEHAYVQPHSGADANLVAFWAI  131 (493)
T ss_pred             EecccccC--CHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCcccccCCCcHHHHHHHHHHH
Confidence            33556554  88998888755442        23444444455554    445666888876 88899999999999998


Q ss_pred             cccC-------------------------------CCeEEec---CCcceeeecccccccccccccccceeeeeeecC-C
Q psy5413         137 CDRR-------------------------------DSEIIVG---DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-K  181 (285)
Q Consensus       137 ~~~~-------------------------------g~~vi~~---~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~  181 (285)
                      +. +                               ||.|+..   ...|........+.       ....+.+..+.+ +
T Consensus       132 l~-~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~-------~~~~~~~~y~vd~~  203 (493)
T PRK13580        132 LA-HKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNIS-------GKMFHQRSYGVDPD  203 (493)
T ss_pred             hc-ccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchh-------hheeeeEecccCcc
Confidence            73 4                               6777653   33343322111111       001222333333 4


Q ss_pred             CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh---------
Q psy5413         182 DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA---------  251 (285)
Q Consensus       182 ~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~---------  251 (285)
                      ++.+|++++++.+++       +++.|++.+.++.+  ...|   +++|+++|+++|+++++|++|+ ++.         
T Consensus       204 ~g~iD~d~l~~~~~~-------~~plvii~g~S~~~--~~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~  271 (493)
T PRK13580        204 TGLLDYDEIAALARE-------FKPLILVAGYSAYP--RRVN---FAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDE  271 (493)
T ss_pred             cCccCHHHHHHHHhh-------cCCEEEEeCccccC--CCcC---HHHHHHHHHHcCCEEEEECchhhceeccccchhhc
Confidence            577999999999988       67888888888773  4778   9999999999999999999988 221         


Q ss_pred             hhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         252 EVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       252 ~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      ....++|++++|+||+|.||.||++++++++++
T Consensus       272 ~~~~~~D~vtgT~hKaL~GP~GG~I~~~~~l~~  304 (493)
T PRK13580        272 DPVPHADIVTTTTHKTLRGPRGGLVLAKKEYAD  304 (493)
T ss_pred             CCCCCCcEEEeCChhhccCCCeEEEEecHHHHH
Confidence            112478999999999998899999999887654

>TIGR01814 kynureninase kynureninase

Probab=99.71  E-value=1.2e-16  Score=145.99  Aligned_cols=194  Identities=11%  Similarity=0.081  Sum_probs=131.9

Q ss_pred             CeeeeeccCCcCCCcHHHHHHHHhcccC-----CCCc-----cCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHH
Q psy5413          66 IRTVDIRSDTISKPTMEMKNYMFNCEVG-----DDVY-----LEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAI  133 (285)
Q Consensus        66 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~-----~~~y-----~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al  133 (285)
                      ..++.|.+...+..++.+.+++.+....     ...+     .......++++ + +++|.+  .++|++|+|+++..++
T Consensus        26 ~~~iyld~~a~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~~  103 (406)
T TIGR01814        26 NAVIYLDGNSLGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVGAKEDEVVVMNTLTINLHLLL  103 (406)
T ss_pred             CCcEEecCCCcCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccCCCCCcEEEeCCchHHHHHHH
Confidence            3457777665565666888887654321     1111     11122333434 4 778865  4689999999999998


Q ss_pred             HHccccCC---CeEEecCCcceeeeccc-ccccccccccccceee----eeeecCCCCCCCHHHHHHHhcccccccCCce
Q psy5413         134 MTHCDRRD---SEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLM----RGVTNQKDGTFDLDEMEAKFSTADNIHCAST  205 (285)
Q Consensus       134 ~~~~~~~g---~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~----~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~  205 (285)
                      ..+. +++   +.|++.+..|.+..... ...      +..|.++    +.++..+++.+|++++++.++.    ..++|
T Consensus       104 ~~~~-~~~~~~~~i~~~~~~~~s~~~~~~~~~------~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~----~~~~t  172 (406)
T TIGR01814       104 ASFY-KPTPKRYKILLEAKAFPSDHYAIESQL------QLHGLTVEESMVQIEPREEETLRLEDILDTIEK----NGDDI  172 (406)
T ss_pred             HHhc-CCcCCccEEEecCCCCChHHHHHHHHH------HhcCCCcccceEEeccCCCCccCHHHHHHHHHh----cCCCe
Confidence            8865 343   25777777776543211 011      2335555    4555545567899999998863    12389


Q ss_pred             EEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhh---hcccCCeEEEecccccCcceeEEe
Q psy5413         206 SLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAE---VCASVDTVMFCLSKGLGAPVGSIL  276 (285)
Q Consensus       206 ~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~---~~~~~dv~~~s~sK~l~~p~gg~~  276 (285)
                      ++|+++++++.+ |.+.|   +++|+++|+++|+++++|++|+ +...   ...++|++++|.||||++|.|+.+
T Consensus       173 ~lv~~~~v~~~t-G~~~~---~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK~l~g~pG~~l  243 (406)
T TIGR01814       173 AVILLSGVQYYT-GQLFD---MAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAGPGAGA  243 (406)
T ss_pred             EEEEEecccccc-ceecC---HHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEcCccccCCCCCeEE
Confidence            999999999999 99999   9999999999999999999998 3222   235899999999999976335543

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PLN02271 serine hydroxymethyltransferase

Probab=99.70  E-value=7.9e-16  Score=141.35  Aligned_cols=189  Identities=14%  Similarity=0.118  Sum_probs=132.1

Q ss_pred             ccCCcCCCcHHHHHHHHhcccC--------CCCccCChhHHHHH----HHHHhHcCCCc----E-EEcCChHHHHHHHHH
Q psy5413          72 RSDTISKPTMEMKNYMFNCEVG--------DDVYLEDPTCKELQ----EKAAKLAGKEA----A-IFVPSGTMGNLIAIM  134 (285)
Q Consensus        72 ~~~~~~~~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~----~~la~~~g~~~----~-~~~~~Gs~a~~~al~  134 (285)
                      .++|+  .++.+++++...+.+        ...|+......++|    ++..++|+.+.    + +..-|||.|+.+++.
T Consensus       155 ASEN~--~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~  232 (586)
T PLN02271        155 ASENF--VCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYT  232 (586)
T ss_pred             ccccc--CCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHH
Confidence            45555  488888887655542        23445555555555    44556678665    3 667799999999999


Q ss_pred             HccccCCCeEEecCC---cceeeec---ccccccccccccccceeeeeee--cC-CCCCCCHHHHHHHhcccccccCCce
Q psy5413         135 THCDRRDSEIIVGDC---SHIMLWE---QGGASQTSVYSQIGRVLMRGVT--NQ-KDGTFDLDEMEAKFSTADNIHCAST  205 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~---~h~~~~~---~~~~~~~~~~~~~~g~~~~~~~--~~-~~~~~d~~~l~~~i~~~~~~~~~~~  205 (285)
                      +++ ++||+|+..+.   .|.+...   .+...      ...|..+..++  .+ +++.+|.+++++.....      ++
T Consensus       233 ALl-~PGD~IL~ldl~~GGHlshg~~~~~g~~v------s~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~------rP  299 (586)
T PLN02271        233 GLL-LPGDRIMGLDSPSGGHMSHGYYTPGGKKV------SGASIFFESLPYKVNPQTGYIDYDKLEEKALDF------RP  299 (586)
T ss_pred             Hhc-CCCCEEEEecCCCCCchhccccccccccc------ccccceEEEEEcccccccCccCHHHHHHHhhhc------CC
Confidence            987 79999888543   3332210   00111      12344444444  42 46789999999954332      89


Q ss_pred             EEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhh------hcccCCeEEEecccccCcceeEEeec
Q psy5413         206 SLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAE------VCASVDTVMFCLSKGLGAPVGSILAG  278 (285)
Q Consensus       206 ~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~------~~~~~dv~~~s~sK~l~~p~gg~~~~  278 (285)
                      ++|++....++   ..+|   +++++++|+++|+++++|.+|. ++..      ...++|++++|.||||.||+||+++.
T Consensus       300 KLII~g~Sayp---r~~D---~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGPrGG~I~~  373 (586)
T PLN02271        300 KILICGGSSYP---REWD---YARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRGGIIFY  373 (586)
T ss_pred             eEEEECchhcc---CcCC---HHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCCCceEEEe
Confidence            99999776665   6678   9999999999999999999998 3331      23579999999999999999999987


Q ss_pred             Ccc
Q psy5413         279 PEE  281 (285)
Q Consensus       279 ~~~  281 (285)
                      +++
T Consensus       374 r~~  376 (586)
T PLN02271        374 RKG  376 (586)
T ss_pred             ccc
Confidence            654

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.70  E-value=9.1e-16  Score=141.88  Aligned_cols=196  Identities=14%  Similarity=0.102  Sum_probs=130.3

Q ss_pred             ccCCcCCCcHHHHHHHHhcccCCC-------C-ccCChhHHH----HHHHHHhHcCCCcE--EEc---CChHHHHHHHHH
Q psy5413          72 RSDTISKPTMEMKNYMFNCEVGDD-------V-YLEDPTCKE----LQEKAAKLAGKEAA--IFV---PSGTMGNLIAIM  134 (285)
Q Consensus        72 ~~~~~~~~~~~v~~a~~~~~~~~~-------~-y~~~~~~~~----l~~~la~~~g~~~~--~~~---~~Gs~a~~~al~  134 (285)
                      .++|+  .+|.+++++.....+..       . +.......+    .++.++++++.+..  .++   .||++|+..++.
T Consensus        41 ~sen~--~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~  118 (452)
T PTZ00094         41 ASENF--TSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYT  118 (452)
T ss_pred             ccccc--CCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHH
Confidence            34544  48889999876554211       1 222222333    45688999997642  233   689999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccc-cccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGG-ASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      +++ ++|++|++.+..|........ +.....-.......+..++.+.++.+|+++|++++++.      ++++|++.. 
T Consensus       119 al~-~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~------~~~lvi~~~-  190 (452)
T PTZ00094        119 ALL-QPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAF------RPKLIIAGA-  190 (452)
T ss_pred             Hhc-CCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHh------CCCEEEEeC-
Confidence            986 689999987766754432110 00000000011233344445556889999999999652      456666633 


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecCccc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGPEEF  282 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~  282 (285)
                       +.+ |...|   +++|.++|+++|+++++|++|+ +..      ....++|++++|+||||+||.||++..++++
T Consensus       191 -s~~-g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP~Gg~l~~~~~~  261 (452)
T PTZ00094        191 -SAY-PRDID---YKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRSGLIFYRKKV  261 (452)
T ss_pred             -CCC-CCccC---HHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCCCceEEEEeccc
Confidence             234 89999   9999999999999999999998 322      1124789999999999999999998876654

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.70  E-value=3.2e-16  Score=138.72  Aligned_cols=188  Identities=20%  Similarity=0.175  Sum_probs=142.9

Q ss_pred             CCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cE-EEcCChHHHHHHHHHHccccCCCeEEecCCccee
Q psy5413          77 SKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AA-IFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIM  153 (285)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~-~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~  153 (285)
                      ...+|+|++++.....+|..-.......++.+.+...++.+  .+ ++..+|+.|+++++..++ .+||+|++....- +
T Consensus        14 ~~v~~~V~~am~~~~~~h~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~-~pgdkVLv~~nG~-F   91 (383)
T COG0075          14 VPVPPRVLLAMARPMVGHRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLV-EPGDKVLVVVNGK-F   91 (383)
T ss_pred             CCCCHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhcc-CCCCeEEEEeCCh-H
Confidence            55789999999887766443333355778888889999876  33 788999999999999988 5999988754331 1


Q ss_pred             eecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHH
Q psy5413         154 LWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR  233 (285)
Q Consensus       154 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~l  233 (285)
                      ...+..++      +.+|.++..+...+....|+++++++++++     +++++|.+.+.-.+| |.+.|   +++|+++
T Consensus        92 G~R~~~ia------~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~-----~~~~~V~~vH~ETST-Gvlnp---l~~I~~~  156 (383)
T COG0075          92 GERFAEIA------ERYGAEVVVLEVEWGEAVDPEEVEEALDKD-----PDIKAVAVVHNETST-GVLNP---LKEIAKA  156 (383)
T ss_pred             HHHHHHHH------HHhCCceEEEeCCCCCCCCHHHHHHHHhcC-----CCccEEEEEeccCcc-cccCc---HHHHHHH
Confidence            22233444      567888888888777789999999999862     256677777744444 89999   9999999


Q ss_pred             HHHcCCeEEEeCccC----ChhhhcccCCeEEEecccccCccee-EEeecCcc
Q psy5413         234 CQEHNIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGAPVG-SILAGPEE  281 (285)
Q Consensus       234 a~~~gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~p~g-g~~~~~~~  281 (285)
                      |++||.++|+|.+-+    .+..-.+++|+++.+..|+|++|-| +++.-+++
T Consensus       157 ~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~  209 (383)
T COG0075         157 AKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSER  209 (383)
T ss_pred             HHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCccceeEECHH
Confidence            999999999999966    3334457999999999999999444 55554443

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.69  E-value=2e-16  Score=146.29  Aligned_cols=163  Identities=19%  Similarity=0.160  Sum_probs=123.9

Q ss_pred             HHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccc-cccccccccccceeeeeeec
Q psy5413         103 CKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGG-ASQTSVYSQIGRVLMRGVTN  179 (285)
Q Consensus       103 ~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~~~~~~~g~~~~~~~~  179 (285)
                      ..++++.+++++|.+.  +.++++|+++++.++.+....+|++|+++++.|.+...... ..      ...|.+++.++.
T Consensus       114 ~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~------~~~G~~~~~v~~  187 (447)
T PRK00451        114 IFEYQTMICELTGMDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYL------KGQGIEVVEVPY  187 (447)
T ss_pred             HHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHH------HhCCcEEEEecC
Confidence            4566677899998764  47889999988888877543578999999888865543221 11      235888899988


Q ss_pred             CCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEE--eCccCChh--hhcc
Q psy5413         180 QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHM--DGARLPLA--EVCA  255 (285)
Q Consensus       180 ~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~--Dea~~~~~--~~~~  255 (285)
                      +++ .+|+++++++|++       ++++|++++| |++ |.+.|   +++|+++|+++|+++++  |.+..+..  ....
T Consensus       188 ~~~-~~d~~~l~~~i~~-------~t~~v~l~~p-n~t-G~v~~---l~~I~~~a~~~~~~~iv~~d~~~~g~~~~~~~~  254 (447)
T PRK00451        188 EDG-VTDLEALEAAVDD-------DTAAVVVQYP-NFF-GVIED---LEEIAEIAHAGGALFIVGVDPVSLGLLKPPGEY  254 (447)
T ss_pred             CCC-CCCHHHHHHhcCC-------CeEEEEEECC-CCC-CeeCC---HHHHHHHHHHCCCEEEEEcChHHhccCCCcccC
Confidence            666 8999999999987       7999999998 677 89998   99999999999999998  65433221  1235


Q ss_pred             cCCeEEEecccc-----cCcceeEEeecCccccc
Q psy5413         256 SVDTVMFCLSKG-----LGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       256 ~~dv~~~s~sK~-----l~~p~gg~~~~~~~~i~  284 (285)
                      ++|+++.+.+|+     ++||.+|+++.++++++
T Consensus       255 ~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~  288 (447)
T PRK00451        255 GADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVR  288 (447)
T ss_pred             CCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHh
Confidence            789998876675     67788888887777654

>KOG1360|consensus

Probab=99.69  E-value=6.6e-17  Score=139.95  Aligned_cols=192  Identities=21%  Similarity=0.266  Sum_probs=144.2

Q ss_pred             eccCCcCC-CcHHHHHHHHhcccC--------CCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcccc-C
Q psy5413          71 IRSDTISK-PTMEMKNYMFNCEVG--------DDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDR-R  140 (285)
Q Consensus        71 ~~~~~~~~-~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~-~  140 (285)
                      .+|++... .||+|++|+.+.+..        .++-+.+....+||+.+|++.+++.+++++|.--||...+..+..+ +
T Consensus       177 CSNDYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDstLftLak~lp  256 (570)
T KOG1360|consen  177 CSNDYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDSTLFTLAKKLP  256 (570)
T ss_pred             ecCccccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcceeeeeeeeeccchHHHHHHHHCC
Confidence            34444443 799999999877652        1244566778999999999999999998888888888888776532 4


Q ss_pred             CCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCee
Q psy5413         141 DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT  220 (285)
Q Consensus       141 g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~  220 (285)
                      |=+++.+...|.+...              |.+-..++.--..+.|+++|+++++..+.   ..+++|.+|.+++.+ |.
T Consensus       257 gcei~SD~gNHASMI~--------------GIrns~v~K~IFrHND~~hL~~lL~~~~~---svPKivAFEtVhSM~-Ga  318 (570)
T KOG1360|consen  257 GCEIFSDEGNHASMIQ--------------GIRNSRVPKHIFRHNDLDHLEQLLQSSPK---SVPKIVAFETVHSMD-GA  318 (570)
T ss_pred             CcEEeccccchHHHHH--------------HhhhcCCcceeeccCCHHHHHHHHHhCCC---CCCceEEEeeeeccC-CC
Confidence            5566656666755422              22222232212234699999999976422   257999999999999 99


Q ss_pred             eCCHHHHHHHHHHHHHcCCeEEEeCccC-Ch-----------hhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         221 VLPMQWLRELKARCQEHNIPVHMDGARL-PL-----------AEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       221 ~~~~~~l~~i~~la~~~gi~li~Dea~~-~~-----------~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      ++|   |+||++++++||.+.++||+|+ ++           .+.....|++..++.|.||+ .||++++...++|
T Consensus       319 vcp---leelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGc-VGGYIAat~~LvD  390 (570)
T KOG1360|consen  319 VCP---LEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGC-VGGYIAATRKLVD  390 (570)
T ss_pred             cCC---HHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccc-ccceehhhhhHHH
Confidence            999   9999999999999999999977 11           23446789999999999998 8999998887765

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.69  E-value=3.3e-16  Score=143.74  Aligned_cols=158  Identities=18%  Similarity=0.171  Sum_probs=119.9

Q ss_pred             ChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcc--------ccCCCeEEecCCcceeeecccccccccccccccc
Q psy5413         100 DPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHC--------DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGR  171 (285)
Q Consensus       100 ~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~--------~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g  171 (285)
                      .+...++++.+++++|.+.+++++||++|+..++.+++        .++|++||++..+|..+....         ...|
T Consensus        62 G~~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v---------~~~G  132 (438)
T PRK15407         62 GRFNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPI---------IQNG  132 (438)
T ss_pred             ChhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHH---------HHcC
Confidence            46688999999999999999999999999999998762        257999999988886553311         1347


Q ss_pred             eeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C
Q psy5413         172 VLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P  249 (285)
Q Consensus       172 ~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~  249 (285)
                      .+++.++.+ .++.+|++++++++++       ++++|+++++.    |...+   +++|.++|++||++||+|++|+ +
T Consensus       133 ~~pv~vdvd~~~~~id~~~le~~i~~-------~tkaVi~~~~~----G~p~d---l~~I~~la~~~gi~vIeDaa~a~G  198 (438)
T PRK15407        133 LVPVFVDVELPTYNIDASLLEAAVSP-------KTKAIMIAHTL----GNPFD---LAAVKAFCDKHNLWLIEDNCDALG  198 (438)
T ss_pred             CEEEEEecCCCcCCcCHHHHHHHcCc-------CCeEEEEeCCC----CChhh---HHHHHHHHHHCCCEEEEECccchh
Confidence            777777764 4567899999999987       78999999875    66666   9999999999999999999988 2


Q ss_pred             hh--h--hcccCCeEEEecc--cccCcceeEEeecCc
Q psy5413         250 LA--E--VCASVDTVMFCLS--KGLGAPVGSILAGPE  280 (285)
Q Consensus       250 ~~--~--~~~~~dv~~~s~s--K~l~~p~gg~~~~~~  280 (285)
                      ..  .  .....|+.++||+  |.+...-||+++.+.
T Consensus       199 ~~~~g~~~G~~gd~~~fSf~~~k~~~~geGG~l~t~d  235 (438)
T PRK15407        199 STYDGRMTGTFGDIATLSFYPAHHITMGEGGAVFTND  235 (438)
T ss_pred             hhcCCeeeeccCceEEEeCCCCCCccccCceEEEECC
Confidence            11  1  1123366666665  656543466666554

>KOG1359|consensus

Probab=99.69  E-value=5.3e-17  Score=135.50  Aligned_cols=192  Identities=19%  Similarity=0.229  Sum_probs=151.7

Q ss_pred             CeeeeeccCCcCC--CcHHHHHHHHhcccC------C--CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHH
Q psy5413          66 IRTVDIRSDTISK--PTMEMKNYMFNCEVG------D--DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMT  135 (285)
Q Consensus        66 ~~~~~~~~~~~~~--~~~~v~~a~~~~~~~------~--~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~  135 (285)
                      +++++|..+++-+  .||++.++-++++..      .  ...++...+..||..|+.+.+.|.++++.++-.||..++.+
T Consensus        67 k~ilnFcaNnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh~rED~ilypscfdANag~fea  146 (417)
T KOG1359|consen   67 KKILNFCANNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFHGREDTILYPSCFDANAGAFEA  146 (417)
T ss_pred             cceeeecccccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHhCCCceEEeccccccchHHHHH
Confidence            6888988777766  799999997766542      1  13456677999999999999999999999999999999988


Q ss_pred             ccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccC
Q psy5413         136 HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHN  215 (285)
Q Consensus       136 ~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n  215 (285)
                      .. .+.+.|+.+...|.+...              |+++..    -..+.|+-+++..+.+.-+   .+.++|.+....+
T Consensus       147 il-~pedAvfSDeLNhASIId--------------GirLck----ry~h~dv~~l~~~l~~a~k---~r~klv~TDg~FS  204 (417)
T KOG1359|consen  147 IL-TPEDAVFSDELNHASIID--------------GIRLCK----RYRHVDVFDLEHCLISACK---MRLKLVVTDGVFS  204 (417)
T ss_pred             hc-Chhhhhhccccccchhhh--------------hhHHHh----hhccchhHHHHHHHHHhhh---heEEEEEecceec
Confidence            76 477777777777765532              444433    3445688888877654211   2789999999999


Q ss_pred             CCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC---------Chh---hhcccCCeEEEecccccCcceeEEeecCcccc
Q psy5413         216 YCGGTVLPMQWLRELKARCQEHNIPVHMDGARL---------PLA---EVCASVDTVMFCLSKGLGAPVGSILAGPEEFI  283 (285)
Q Consensus       216 ~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~---------~~~---~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i  283 (285)
                      .. |.+.|   |++|++++++||.++++||+|+         +..   .....+|++..+++|.+||-.||+.++++.++
T Consensus       205 MD-GdiaP---l~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~GGyttgp~~li  280 (417)
T KOG1359|consen  205 MD-GDIAP---LEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASGGYTTGPKPLI  280 (417)
T ss_pred             cC-CCccc---HHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCCCCccCChhHH
Confidence            99 99999   9999999999999999999988         222   22357889999999999998999999988765

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.69  E-value=4.3e-16  Score=141.87  Aligned_cols=166  Identities=19%  Similarity=0.216  Sum_probs=120.1

Q ss_pred             hhHHHHHHHHHhHcCCC---cEEEcCChH-HHHHHHHHHcccc--CCCeEEecCCcceeeecccccccccccccccceee
Q psy5413         101 PTCKELQEKAAKLAGKE---AAIFVPSGT-MGNLIAIMTHCDR--RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLM  174 (285)
Q Consensus       101 ~~~~~l~~~la~~~g~~---~~~~~~~Gs-~a~~~al~~~~~~--~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~  174 (285)
                      ....++++.+++++|.+   .++++++|| .++..++.++..+  +|++||++...|.++..+....         |.++
T Consensus       105 ~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~---------G~~p  175 (444)
T TIGR03531       105 KLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTA---------GFEP  175 (444)
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHc---------CCeE
Confidence            34778889999999987   679999999 6888888776522  4788999888898887655454         7787


Q ss_pred             eeeec---CCCCCCCHHHHHHHhcccccccCCceEEEEEecc-cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh
Q psy5413         175 RGVTN---QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT-HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL  250 (285)
Q Consensus       175 ~~~~~---~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~-~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~  250 (285)
                      +.++.   ++++.+|+++|+++|++.    ..+..++++..+ ++.. |.+.+   +++|+++|++||+|+|+|++|+..
T Consensus       176 v~Vd~~~d~~~~~iD~e~Le~aIt~~----~~kai~~Vv~Tp~t~~~-g~~dd---L~eIa~la~k~gI~lIvDaAyg~~  247 (444)
T TIGR03531       176 RVIETVLDGDELTTDVEDIERAIEEI----GPDNILCVLSTTSCFAP-RSPDD---IEEIAKICANYDIPHIVNNAYGLQ  247 (444)
T ss_pred             EEeeeeecCcCCCcCHHHHHHHHHhc----cCCCEEEEEEcCCcCCC-cchhC---HHHHHHHHHHcCCEEEEECcCcCc
Confidence            77773   356789999999999852    112334444333 3322 46666   999999999999999999999821


Q ss_pred             h---------hhc-ccCCeEEEecccccCcce-eEEeec-Ccccc
Q psy5413         251 A---------EVC-ASVDTVMFCLSKGLGAPV-GSILAG-PEEFI  283 (285)
Q Consensus       251 ~---------~~~-~~~dv~~~s~sK~l~~p~-gg~~~~-~~~~i  283 (285)
                      .         ... ..+|++++++||++..|. ||+++. +++++
T Consensus       248 ~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~  292 (444)
T TIGR03531       248 SNKYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFI  292 (444)
T ss_pred             ChhhhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHH
Confidence            1         111 146999999999998854 555544 56554

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.69  E-value=2.9e-16  Score=140.06  Aligned_cols=181  Identities=10%  Similarity=-0.008  Sum_probs=122.0

Q ss_pred             eeeeecc-CCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC---cEEEcCChHHHHHHHHHHccccCCC
Q psy5413          67 RTVDIRS-DTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE---AAIFVPSGTMGNLIAIMTHCDRRDS  142 (285)
Q Consensus        67 ~~~~~~~-~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~---~~~~~~~Gs~a~~~al~~~~~~~g~  142 (285)
                      .+++|++ .++.++++....+  ...   ..|. ++. .+|++.+++++|..   .+++++|+++++..... ++ ++|+
T Consensus        25 ~~i~ls~Nenp~~~~~~~~~~--~~~---~~Yp-~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~-~~-~~g~   95 (339)
T PRK06959         25 AWLDLSTGINPHGYPVPPVPA--DAW---RRLP-EDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPA-LL-PRGR   95 (339)
T ss_pred             hhceeccCCCCCCCCCCCCCH--HHH---HhCC-Cch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHH-hc-CCCe
Confidence            4577774 5554444222111  111   2354 454 89999999999874   35777777777775544 45 4676


Q ss_pred             eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413         143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL  222 (285)
Q Consensus       143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~  222 (285)
                       +++..+++.......         ...|.+++.++.++          +.+.+       .++++++++|+||| |.++
T Consensus        96 -v~v~~P~y~~y~~~~---------~~~g~~~~~v~~~~----------~~~~~-------~~~~v~l~nPnNPT-G~~~  147 (339)
T PRK06959         96 -VGIAPLAYSEYAPAF---------ARHGHRVVPLDEAA----------DTLPA-------ALTHLIVVNPNNPT-AERL  147 (339)
T ss_pred             -EEEcCCCcHHHHHHH---------HHCCCEEEeecccc----------hhccc-------cCCEEEEeCCCCCC-CCCC
Confidence             777777765443322         23488888776521          22323       45789999999999 9999


Q ss_pred             CHHHHHHHHHHHHHcCCeEEEeCccCChh------hhcccCC-eEEEecccccCc--ceeEEeecCccccc
Q psy5413         223 PMQWLRELKARCQEHNIPVHMDGARLPLA------EVCASVD-TVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       223 ~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~~~~d-v~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      +.++++++++.|+++++++|+||+|..+.      .+...-+ +++.||||.++.  .+.|++++++++++
T Consensus       148 s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfSK~~gl~GlRiGy~v~~~~li~  218 (339)
T PRK06959        148 PAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSVGKFFGLAGVRAGFVLAAPALLA  218 (339)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecChhhcCCcchheEEEecCHHHHH
Confidence            99999999999999999999999988321      1112223 448999998864  67789998888764

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.69  E-value=5.4e-16  Score=134.75  Aligned_cols=192  Identities=19%  Similarity=0.182  Sum_probs=137.4

Q ss_pred             eeccCCcCCCcHHHHHHHHhcccC--------CCCccCChhHHHHH----HHHHhHcCCCcE-EEcCChHHHHHHHHHHc
Q psy5413          70 DIRSDTISKPTMEMKNYMFNCEVG--------DDVYLEDPTCKELQ----EKAAKLAGKEAA-IFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        70 ~~~~~~~~~~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~----~~la~~~g~~~~-~~~~~Gs~a~~~al~~~  136 (285)
                      ..+|+|+.  ++.|++|+-..+.+        .+.|+..+..+++|    ++..++||.+.+ +...|||.||.+++.++
T Consensus        31 LIASEN~~--S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~anVQPhSGs~AN~av~~Al  108 (413)
T COG0112          31 LIASENFT--SPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANVQPHSGSQANQAVYLAL  108 (413)
T ss_pred             eeeccccC--CHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccccCCCCchHHHHHHHHHH
Confidence            34677765  88999997665542        34566555555555    444667899887 88999999999999998


Q ss_pred             cccCCCeEEecCCc---ceeeecccccccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         137 CDRRDSEIIVGDCS---HIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       137 ~~~~g~~vi~~~~~---h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      + +|||.|+-.+..   |.....  .+.    ++... .+.+..+.+ +++.+|.|++++.+.++      ++++|+.-.
T Consensus       109 l-~pGDtimgm~l~~GGHltHg~--~v~----~sG~~-~~~v~Y~vd~et~~IDyD~~~k~a~e~------kPK~ii~G~  174 (413)
T COG0112         109 L-QPGDTIMGLDLSHGGHLTHGS--PVN----FSGKL-FNVVSYGVDPETGLIDYDEVEKLAKEV------KPKLIIAGG  174 (413)
T ss_pred             c-CCCCeEecccCCCCCcccCCC--CCC----cccee-EEeEecccccccCccCHHHHHHHHHHh------CCCEEEECc
Confidence            8 699998865433   322211  111    11111 344455554 45789999999999875      788888733


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecCc-ccc
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGPE-EFI  283 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~-~~i  283 (285)
                      .-.   -..+|   +++++++|++-|.+|++|.+|. ++.      .-..++|+++.|.||+|.||+||+++.++ ++.
T Consensus       175 SaY---~r~id---~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~AdvVTtTTHKTlrGPrGG~Il~~~eel~  247 (413)
T COG0112         175 SAY---SRPID---FKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTLRGPRGGIILTNDEELA  247 (413)
T ss_pred             ccc---ccccC---HHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCccceEeCCcccCCCCCCceEEEeccHHHH
Confidence            222   35666   9999999999999999999988 222      22357999999999999999999999885 554

>PLN02263 serine decarboxylase

Probab=99.68  E-value=6.5e-16  Score=140.70  Aligned_cols=160  Identities=21%  Similarity=0.238  Sum_probs=120.9

Q ss_pred             HHHHHHHH----HhHcCCCc----EEEcCChHHHHHHHHHHccccC-CCeEEecCCcceeeeccccccccccccccccee
Q psy5413         103 CKELQEKA----AKLAGKEA----AIFVPSGTMGNLIAIMTHCDRR-DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVL  173 (285)
Q Consensus       103 ~~~l~~~l----a~~~g~~~----~~~~~~Gs~a~~~al~~~~~~~-g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~  173 (285)
                      ..++|+.+    ++++|.+.    ++++++||+||..++.+++... ...+++++.+|.+..++..+.         |.+
T Consensus       131 s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~ll---------gi~  201 (470)
T PLN02263        131 SRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMY---------RME  201 (470)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhc---------CCc
Confidence            55666555    55556532    5899999999999999987532 235778999999988865555         888


Q ss_pred             eeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCC-----eEEEeCccC
Q psy5413         174 MRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNI-----PVHMDGARL  248 (285)
Q Consensus       174 ~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi-----~li~Dea~~  248 (285)
                      ++.+|.++++.+|+++|+++|.++    ..++.+|+.+-.+-++ |.+.|   |++|.++|+++|+     |+|+|+|++
T Consensus       202 ~~~Vp~d~~g~mD~~aL~~aI~~d----~~~P~iVvataGTT~~-GAiDp---i~eIa~i~~~~g~~~~~iwlHVDAA~G  273 (470)
T PLN02263        202 CVKVDTLVSGEIDCADFKAKLLAN----KDKPAIINVNIGTTVK-GAVDD---LDLVIKTLEECGFSQDRFYIHCDGALF  273 (470)
T ss_pred             ceEeccCCCCcCcHHHHHHHHHhC----CCCcEEEEEEecCCCC-cCCCC---HHHHHHHHHHcCCccCCeeEEEeccch
Confidence            999998888999999999999763    1245566666655566 99999   9999999999997     999999987


Q ss_pred             Chh----------hhcccCCeEEEecccccCcce--eEEeecC
Q psy5413         249 PLA----------EVCASVDTVMFCLSKGLGAPV--GSILAGP  279 (285)
Q Consensus       249 ~~~----------~~~~~~dv~~~s~sK~l~~p~--gg~~~~~  279 (285)
                      +..          .....+|.++.++|||++.|.  |.+++.+
T Consensus       274 G~~lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~  316 (470)
T PLN02263        274 GLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRM  316 (470)
T ss_pred             hhHhhhcccccccCCCcCccEEEECCccccCCCcCEEEEEEeh
Confidence            321          111348999999999999854  4444443

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.67  E-value=1.9e-16  Score=142.14  Aligned_cols=169  Identities=23%  Similarity=0.347  Sum_probs=123.2

Q ss_pred             CCccCChhHHHHHHHHHhHcCCCcEEEcCCh-HHHHHHHHHHccccCCCeEEecCCcceeeeccccccccccccccccee
Q psy5413          95 DVYLEDPTCKELQEKAAKLAGKEAAIFVPSG-TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVL  173 (285)
Q Consensus        95 ~~y~~~~~~~~l~~~la~~~g~~~~~~~~~G-s~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~  173 (285)
                      +.+.+.....+.++.+|+.+|.++.+|..+| |.+|.+++.+++ ++||.|+++..+|.++..+..++         |..
T Consensus        60 ~L~~p~G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~-~~gd~VLv~RN~HkSv~~alil~---------ga~  129 (417)
T PF01276_consen   60 DLHDPEGIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALC-RPGDKVLVDRNCHKSVYNALILS---------GAI  129 (417)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHT-TTTCEEEEETT--HHHHHHHHHH---------TEE
T ss_pred             cccCCccHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhc-CCCCEEEEcCCcHHHHHHHHHHc---------CCe
Confidence            3444556699999999999999998666555 677888888877 69999999999999887755455         777


Q ss_pred             eeeeecCC--CC---CCCH-----HHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEE
Q psy5413         174 MRGVTNQK--DG---TFDL-----DEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHM  243 (285)
Q Consensus       174 ~~~~~~~~--~~---~~d~-----~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~  243 (285)
                      .+.++...  .+   .+++     +.++++|+++..+.  .+++|++++|+..  |.+++   +++|+++|++++++|++
T Consensus       130 Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k--~~~~vvlt~PTY~--Gv~~d---i~~I~~~~h~~~~~llv  202 (417)
T PF01276_consen  130 PVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAK--APRLVVLTSPTYY--GVCYD---IKEIAEICHKHGIPLLV  202 (417)
T ss_dssp             EEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCH--CESEEEEESS-TT--SEEE----HHHHHHHHCCTECEEEE
T ss_pred             EEEecCCccccCCccCCChhhhhHHHHHHHHHhCcccc--CceEEEEeCCCCC--eEEEC---HHHHHHHhcccCCEEEE
Confidence            77665431  11   2455     99999998854332  1566999999988  99999   99999999999999999


Q ss_pred             eCccCC---hh-----hhcccCC-------eEEEecccccCc-ceeEEeecCc
Q psy5413         244 DGARLP---LA-----EVCASVD-------TVMFCLSKGLGA-PVGSILAGPE  280 (285)
Q Consensus       244 Dea~~~---~~-----~~~~~~d-------v~~~s~sK~l~~-p~gg~~~~~~  280 (285)
                      ||||+.   +.     ....++|       +++.|.||.+++ ..++++-.+.
T Consensus       203 DEAhGah~~F~~lp~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~  255 (417)
T PF01276_consen  203 DEAHGAHFGFHPLPRSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKG  255 (417)
T ss_dssp             E-TT-TTGGCSGGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEET
T ss_pred             EccccccccCCCCccchhhccCccccccceeeeechhhcccccccceEEEecC
Confidence            999881   11     1225788       999999999998 5666665443

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.67  E-value=1.4e-15  Score=136.94  Aligned_cols=158  Identities=16%  Similarity=0.172  Sum_probs=119.3

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|...+||+.++++.|.+.++.++||+.|+.+++.+++ ++||+|+++...|+.+.... ...      ...|.+++.+
T Consensus        62 ~~P~~~~lE~~la~leg~~~av~~sSG~aAi~~al~all-~~GD~Vl~~~~~yg~t~~~~~~~~------~~~Gi~v~fv  134 (384)
T PRK06434         62 GNPTVQAFEEKYAVLENAEHALSFSSGMGAITSAILSLI-KKGKRILSISDLYGQTFYFFNKVL------KTLGIHVDYI  134 (384)
T ss_pred             CChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEecCccchHHHHHHHHH------HhcCcEEEEE
Confidence            678899999999999999999999999999999999876 68999998765444333211 111      3457787777


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~  254 (285)
                      +.++..     .++  ++.      .++++|+++.++|++ +.+.|   +++|+++|++++  +++|.+++..   ..+.
T Consensus       135 d~~~~~-----~~~--l~~------~~tklv~~e~~snpt-~~v~D---i~~I~~la~~~~--lvVD~t~~s~~~~~pl~  195 (384)
T PRK06434        135 DTDRLN-----SLD--FDP------SNYDLIYAESITNPT-LKVPD---IKNVSSFCHEND--VIVDATFASPYNQNPLD  195 (384)
T ss_pred             CCCChh-----hee--ecC------CCeeEEEEEcCCCCC-ceeec---HHHHHHHHHHcC--eEEECCCCCcccCCchh
Confidence            763212     222  322      168999999999999 89999   999999999998  4679998722   2344


Q ss_pred             ccCCeEEEecccccCc---ceeEEeec-Cccc
Q psy5413         255 ASVDTVMFCLSKGLGA---PVGSILAG-PEEF  282 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~---p~gg~~~~-~~~~  282 (285)
                      .++|++++|.+|++++   -.||+++. ++++
T Consensus       196 ~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~  227 (384)
T PRK06434        196 LGADVVIHSATKYISGHSDVVMGVAGTNNKSI  227 (384)
T ss_pred             cCCCEEEeecccccCCCCCceEEEEecCcHHH
Confidence            6899999999999987   34777765 4443

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.67  E-value=1.6e-15  Score=147.53  Aligned_cols=165  Identities=16%  Similarity=0.153  Sum_probs=128.8

Q ss_pred             hhHHHHHHHHHhHcCCCcE-EEcCChHHHHHHHHHHccc-------cCCCeEEecCCcceeeecccccccccccccccce
Q psy5413         101 PTCKELQEKAAKLAGKEAA-IFVPSGTMGNLIAIMTHCD-------RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRV  172 (285)
Q Consensus       101 ~~~~~l~~~la~~~g~~~~-~~~~~Gs~a~~~al~~~~~-------~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~  172 (285)
                      +...++++.+++++|.+.+ ++.++|+.|..+++.+...       ...+.|+++...|++.......         .|.
T Consensus       530 q~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~---------~G~  600 (939)
T TIGR00461       530 ELIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAM---------AGM  600 (939)
T ss_pred             HHHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHH---------CCC
Confidence            4578999999999999876 7888888888776666542       1224588899999777554333         488


Q ss_pred             eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeee-CCHHHHHHHHHHHHHcCCeEEEeCccC-Ch
Q psy5413         173 LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTV-LPMQWLRELKARCQEHNIPVHMDGARL-PL  250 (285)
Q Consensus       173 ~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~-~~~~~l~~i~~la~~~gi~li~Dea~~-~~  250 (285)
                      +++.++.++++.+|+++|++++++    +++++++|++++|++.  |.+ .+   +++|+++||++|.++++|.++. +.
T Consensus       601 ~Vv~V~~d~~G~iDle~L~~~i~~----~~~~taaV~iT~pst~--G~~e~~---I~eI~~iah~~G~~v~VDgAq~~al  671 (939)
T TIGR00461       601 QVVPVNCDQDGNIDLVDLKNKAEQ----HGDELAAVMVTYPSTH--GVFEPT---IQHACDIVHSFGGQVYLDGANMNAQ  671 (939)
T ss_pred             EEEEeccCCCCCcCHHHHHHHHhh----cCCceEEEEEEeCCcC--ceeccc---HHHHHHHHHHcCCEEEEEecChhhC
Confidence            999999878899999999999986    3458999999999984  555 45   9999999999999999999986 12


Q ss_pred             h---h-hcccCCeEEEecccccCc------ceeEEeecCcccc
Q psy5413         251 A---E-VCASVDTVMFCLSKGLGA------PVGSILAGPEEFI  283 (285)
Q Consensus       251 ~---~-~~~~~dv~~~s~sK~l~~------p~gg~~~~~~~~i  283 (285)
                      .   . -..++|+++++.||+|++      |..|+++.++++.
T Consensus       672 ~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~  714 (939)
T TIGR00461       672 VGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLI  714 (939)
T ss_pred             CCCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhch
Confidence            2   1 235899999999998884      5557777766543

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>KOG0628|consensus

Probab=99.67  E-value=5.3e-16  Score=136.65  Aligned_cols=234  Identities=17%  Similarity=0.192  Sum_probs=170.9

Q ss_pred             cccchhhhhhcccCCCCCccccccc------ccccc----ccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCC
Q psy5413          10 DSHRQTKIAREVLTLPTPALVESTP------LSRSW----SDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKP   79 (285)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (285)
                      .-|+++...+.+.|...|+-+....      ....|    .+......|++.+|.+|.++.+++.            ...
T Consensus        18 adY~e~ir~r~v~P~v~PGYl~~llP~~aPe~pE~~~~Il~D~ekiI~PGitHw~hP~fhAyfpa------------~~s   85 (511)
T KOG0628|consen   18 ADYLENIRKRRVLPDVKPGYLRDLLPSKAPEKPESWEDILGDLEKIIMPGITHWQHPHFHAYFPA------------GNS   85 (511)
T ss_pred             HHHHHhhhccCCCCCCCcchhhhhCCCCCCCChhhHHHHHHHHHHHccCCCcccCCCceeeEccC------------ccc
Confidence            4577888888888777776654221      11222    3466678899999999998888877            445


Q ss_pred             cHHHHHHHHhcccCCCCc--cCChhHHHHHHHHHhHcC----CC-----------cEEEcCChHHHHHHHHHHcccc---
Q psy5413          80 TMEMKNYMFNCEVGDDVY--LEDPTCKELQEKAAKLAG----KE-----------AAIFVPSGTMGNLIAIMTHCDR---  139 (285)
Q Consensus        80 ~~~v~~a~~~~~~~~~~y--~~~~~~~~l~~~la~~~g----~~-----------~~~~~~~Gs~a~~~al~~~~~~---  139 (285)
                      .+.++..|.....+..+|  ...|..+|||..+.+|++    .+           -+++..++|++++.++.++..+   
T Consensus        86 ~~siladmLs~~i~~vGFtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~  165 (511)
T KOG0628|consen   86 YPSILADMLSGGIGCVGFTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIE  165 (511)
T ss_pred             hHHHHHHHHhcccccccceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHH
Confidence            678888888776665444  478999999988888763    11           2378888999999999887431   


Q ss_pred             ---CCC------------eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCc
Q psy5413         140 ---RDS------------EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCAS  204 (285)
Q Consensus       140 ---~g~------------~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~  204 (285)
                         .++            .+++++.+|.++.+++-++         +++++.++.+.++.++.+.|+++|+++...+ --
T Consensus       166 ~~k~~~p~~~e~~~~~~lV~Y~SDqahssveka~~i~---------~VklR~l~td~n~~mr~~~L~~AIe~D~arG-lI  235 (511)
T KOG0628|consen  166 EIKSRPPELHESSVLARLVAYCSDQAHSSVEKACLIA---------GVKLRALPTDENFGMRGDTLRKAIEEDIARG-LI  235 (511)
T ss_pred             HhhcCCCcccchhhhhhheEEecCcccchHHHhHhhc---------ceeEEEeecccCcCCCHHHHHHHHHHHHhCC-Cc
Confidence               121            2567899999998877666         8899999987788899999999998854432 22


Q ss_pred             eEEEEEec-ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhhh----------cccCCeEEEecccccCc
Q psy5413         205 TSLVCVEN-THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEV----------CASVDTVMFCLSKGLGA  270 (285)
Q Consensus       205 ~~~v~i~~-~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~~----------~~~~dv~~~s~sK~l~~  270 (285)
                      +-+|+.+- ++     ..+..++|.+|..+|+++|+||++|++|++...+          .+++|.+.+..|||+..
T Consensus       236 Pf~v~at~GTT-----~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~v  307 (511)
T KOG0628|consen  236 PFFVCATLGTT-----SSCAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLV  307 (511)
T ss_pred             cEEEEEeecCc-----cccccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEE
Confidence            33333333 33     3334445999999999999999999999943332          25778999999999754

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.67  E-value=3.8e-15  Score=128.63  Aligned_cols=196  Identities=20%  Similarity=0.250  Sum_probs=132.5

Q ss_pred             cHHHHHHHHhccc------CCCCcc-CChhHHHHHHHHHhHcCCCcEE---EcCChHHHHHHHHHHccccCCCeEEec--
Q psy5413          80 TMEMKNYMFNCEV------GDDVYL-EDPTCKELQEKAAKLAGKEAAI---FVPSGTMGNLIAIMTHCDRRDSEIIVG--  147 (285)
Q Consensus        80 ~~~v~~a~~~~~~------~~~~y~-~~~~~~~l~~~la~~~g~~~~~---~~~~Gs~a~~~al~~~~~~~g~~vi~~--  147 (285)
                      ...|++|+++.-.      +...|+ .+...+.|++..|+.+|.|.++   ...|||.|+..++...+ +|||+++..  
T Consensus        26 q~KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~L-rpGD~ll~~tG  104 (403)
T PF06838_consen   26 QLKVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVL-RPGDELLSITG  104 (403)
T ss_dssp             HHHHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH---TT-EEEESSS
T ss_pred             HHHHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcC-CCCCeEEEcCC
Confidence            4578888886544      234666 4567889999999999999985   45689999999999987 699997753  


Q ss_pred             CCcceeeecccccccc-cccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHH
Q psy5413         148 DCSHIMLWEQGGASQT-SVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW  226 (285)
Q Consensus       148 ~~~h~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~  226 (285)
                      .+| -...+.-++... ..--..+|+.+..++..+++.+|.+.+++++++       ++++|.+.-..+.+.-..++.++
T Consensus       105 ~PY-DTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~~-------~tk~v~IQRSrGYs~R~sl~i~~  176 (403)
T PF06838_consen  105 KPY-DTLEEVIGIRGNGPGSLKEFGIKYREVPLTEDGTIDWEAIKKALKP-------NTKMVLIQRSRGYSWRPSLTIEE  176 (403)
T ss_dssp             S---CCHHHHHTSSSSSSSSTGGGT-EEEE--B-TTSSB-HHHHHHHHHT-------TEEEEEEE-S-TTSSS----HHH
T ss_pred             Cch-hhHHHHhCCCCCCCCChHHhCceeEEEeecCCCCcCHHHHHHhhcc-------CceEEEEecCCCCCCCCCCCHHH
Confidence            232 111111111110 000035799999999989999999999999997       89999999988877567788888


Q ss_pred             HHHHHHHHHHc--CCeEEEeCccCChhh----hcccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413         227 LRELKARCQEH--NIPVHMDGARLPLAE----VCASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ  284 (285)
Q Consensus       227 l~~i~~la~~~--gi~li~Dea~~~~~~----~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~  284 (285)
                      |+++++++|+.  ++++++|.+|+.+.+    ..-++|++..|+-|+.||   |.||++++++++++
T Consensus       177 I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe  243 (403)
T PF06838_consen  177 IKEIIKFVKEINPDVIIFVDNCYGEFVETQEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVE  243 (403)
T ss_dssp             HHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHH
T ss_pred             HHHHHHHHHhhCCCeEEEEeCCcceeccccCccccchhheeccceeCCCCCccCcCCEEechHHHHH
Confidence            99999988874  999999999994433    335899999999999988   99999999999986

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.66  E-value=1.8e-15  Score=138.74  Aligned_cols=185  Identities=22%  Similarity=0.209  Sum_probs=132.8

Q ss_pred             CCCcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhH----cCC-Cc--EEEcCChHHHHHHHHHHccccC----C---
Q psy5413          77 SKPTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKL----AGK-EA--AIFVPSGTMGNLIAIMTHCDRR----D---  141 (285)
Q Consensus        77 ~~~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~----~g~-~~--~~~~~~Gs~a~~~al~~~~~~~----g---  141 (285)
                      +..++...+++...... -.-+...|...++++.+..+    ++. +.  ..|+.+||+||+.++.++....    +   
T Consensus        72 ~~~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~  151 (460)
T COG0076          72 TRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAES  151 (460)
T ss_pred             CCCHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcc
Confidence            33566666665544432 22233345666677666554    555 32  4899999999999998875321    1   


Q ss_pred             ------CeEEecCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEE--EEEec
Q psy5413         142 ------SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSL--VCVEN  212 (285)
Q Consensus       142 ------~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~--v~i~~  212 (285)
                            .+||++..+|.+..++..+.         |+.+..++..+ +..+|+++++++|++       .+..  |+..-
T Consensus       152 ~~~~~~P~ii~s~~aH~s~~Kaa~~l---------G~~~~~v~~~~~~~~id~~~l~~~i~~-------~t~~g~vV~~a  215 (460)
T COG0076         152 GKPGGKPNIVCSETAHFSFEKAARYL---------GLGLRRVPTVPTDYRIDVDALEEAIDE-------NTIGGVVVGTA  215 (460)
T ss_pred             cccCCCCeEEecCcchhHHHHHHHHh---------CCCceeEEeccCccccCHHHHHHHHHh-------hccCceEEEEe
Confidence                  15888999999988865554         77777777766 788999999999998       3332  55555


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----------hhhcccCCeEEEecccccCc--ceeEEeecC
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----------AEVCASVDTVMFCLSKGLGA--PVGSILAGP  279 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----------~~~~~~~dv~~~s~sK~l~~--p~gg~~~~~  279 (285)
                      .+-++ |.+.|   |++|+++|+++|+|+|+|+|++++           .+-.+++|.++.++||++..  +.|++++.+
T Consensus       216 GtT~~-G~iDd---i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd  291 (460)
T COG0076         216 GTTDT-GSIDD---IEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRD  291 (460)
T ss_pred             cCCCC-CccCC---HHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEEC
Confidence            55555 99999   999999999999999999998721           22346889999999999887  455666666


Q ss_pred             cc
Q psy5413         280 EE  281 (285)
Q Consensus       280 ~~  281 (285)
                      ++
T Consensus       292 ~e  293 (460)
T COG0076         292 EE  293 (460)
T ss_pred             HH
Confidence            63

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.65  E-value=2.6e-15  Score=124.24  Aligned_cols=190  Identities=15%  Similarity=0.228  Sum_probs=152.8

Q ss_pred             CcHHHHHHHHhcccCCC---Cc--c-----CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecC
Q psy5413          79 PTMEMKNYMFNCEVGDD---VY--L-----EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGD  148 (285)
Q Consensus        79 ~~~~v~~a~~~~~~~~~---~y--~-----~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~  148 (285)
                      -+++.++|+.+...+..   .+  +     .-|.+..+-+.+++++|.+.+-+++++.+|-++++.+++ ++||-|+++.
T Consensus        29 Lt~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFlg~D~~R~t~GARe~KfavMhal~-~~gd~vV~D~  107 (382)
T COG1103          29 LTEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFLGMDEVRVTAGAREAKFAVMHALC-KEGDWVVVDS  107 (382)
T ss_pred             CCHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHHHHHHhCCceeeecccchhhHHHHHHHhc-cCCCEEEEcC
Confidence            57788999888665522   11  1     335577788889999999999999999999999999988 7999999999


Q ss_pred             CcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHH
Q psy5413         149 CSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW  226 (285)
Q Consensus       149 ~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~  226 (285)
                      .+|+.++.+...         .|.++..+|.+  +++.+++|...+.|++-.+..++.+++.+++++.+.- |.+.|   
T Consensus       108 ~aHYttyvAAEr---------agl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~Y-GNl~D---  174 (382)
T COG1103         108 LAHYTTYVAAER---------AGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEY-GNLAD---  174 (382)
T ss_pred             cchHHHHHHHHh---------cCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCc-CCchh---
Confidence            999888764434         48899999864  4567899999999887666666789999999988776 88888   


Q ss_pred             HHHHHHHHHHcCCeEEEeCccC-Ch---hhhcccCCeEEEecccccCc--ceeEEeecCcccc
Q psy5413         227 LRELKARCQEHNIPVHMDGARL-PL---AEVCASVDTVMFCLSKGLGA--PVGSILAGPEEFI  283 (285)
Q Consensus       227 l~~i~~la~~~gi~li~Dea~~-~~---~~~~~~~dv~~~s~sK~l~~--p~gg~~~~~~~~i  283 (285)
                      -++++++|+++|+++++..+|+ +.   ....-++|+++.|.||++++  |.| ++..++|+-
T Consensus       175 akkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmAAs~PiG-vl~~~eE~a  236 (382)
T COG1103         175 AKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIG-VLAMSEEWA  236 (382)
T ss_pred             hHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEecCccchhccCCee-EEeehhHHH
Confidence            9999999999999999999998 33   33345899999999999877  755 666666553

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.63  E-value=5.7e-15  Score=132.10  Aligned_cols=190  Identities=17%  Similarity=0.129  Sum_probs=114.2

Q ss_pred             cCCcCCCcHHHHHHHHhcccC--------CCCccCChhHHHHH----HHHHhHcCCC----cE-EEcCChHHHHHHHHHH
Q psy5413          73 SDTISKPTMEMKNYMFNCEVG--------DDVYLEDPTCKELQ----EKAAKLAGKE----AA-IFVPSGTMGNLIAIMT  135 (285)
Q Consensus        73 ~~~~~~~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~----~~la~~~g~~----~~-~~~~~Gs~a~~~al~~  135 (285)
                      ++|+  .+|.+++++...+.+        ...|+......++|    +++.++++++    .+ +-.-||+.|+.+++.+
T Consensus        28 SEN~--~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~a  105 (399)
T PF00464_consen   28 SENY--MSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMA  105 (399)
T ss_dssp             T-------HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHH
T ss_pred             cccc--cCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHH
Confidence            4444  488888888765542        12344445555544    5556778988    65 8888999999999999


Q ss_pred             ccccCCCeEEecC---CcceeeecccccccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413         136 HCDRRDSEIIVGD---CSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVE  211 (285)
Q Consensus       136 ~~~~~g~~vi~~~---~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~  211 (285)
                      ++ ++||+|+..+   ..|.+........  ..-......+.+.++.+ +++.+|.+++++.+++.      ++++|++-
T Consensus       106 Ll-~pGD~Im~l~l~~GGHlshg~~~~~~--~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~------kPklIi~G  176 (399)
T PF00464_consen  106 LL-KPGDTIMGLSLPHGGHLSHGSSVNFK--KISASGLYFESVPYPVDPDTGLIDYDELEKLAKEH------KPKLIICG  176 (399)
T ss_dssp             HT--TT-EEEEEEGGGT--GGGT-TTSHS--BSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--------SEEEEE
T ss_pred             HH-hhcCcEEecChhhccccccccccccc--ccccccceEEEEeeeeecCCCeECHHHHHHHHhhc------CCCEEEEC
Confidence            88 6999988743   3343221111110  00000012244555554 56789999999999875      88999997


Q ss_pred             cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Ch------hhhcccCCeEEEecccccCcceeEEeecC
Q psy5413         212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PL------AEVCASVDTVMFCLSKGLGAPVGSILAGP  279 (285)
Q Consensus       212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~------~~~~~~~dv~~~s~sK~l~~p~gg~~~~~  279 (285)
                      ....+   ..+|   +++++++|++.|.+|++|.+|. ++      ..-..++|++++|.||+|.||+||+++.+
T Consensus       177 ~S~y~---~~~d---~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~ADvvt~sThKtl~GPrggiI~~~  245 (399)
T PF00464_consen  177 ASSYP---RPID---FKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPYADVVTGSTHKTLRGPRGGIILTN  245 (399)
T ss_dssp             -SSTS---S------HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCTSSEEEEESSGGG-SSS-EEEEES
T ss_pred             chhcc---CccC---HHHHHHHHHhcCcEEEecccccccceehheecCccccceEEEeeccccccccCceEEEEc
Confidence            66553   5666   8999999999999999999988 22      12236799999999999999999999988

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.63  E-value=5.4e-15  Score=145.77  Aligned_cols=165  Identities=19%  Similarity=0.230  Sum_probs=122.9

Q ss_pred             hhHHHHHHHHHhHcCCCcEEE-cCChHHHHHHHHHHccc---cCCC----eEEecCCcceeeecccccccccccccccce
Q psy5413         101 PTCKELQEKAAKLAGKEAAIF-VPSGTMGNLIAIMTHCD---RRDS----EIIVGDCSHIMLWEQGGASQTSVYSQIGRV  172 (285)
Q Consensus       101 ~~~~~l~~~la~~~g~~~~~~-~~~Gs~a~~~al~~~~~---~~g~----~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~  172 (285)
                      ....++++.+++++|.+.+.+ .++|++|+.+++.++..   ++|+    .|++++..|.+......         ..|.
T Consensus       542 ~~i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~---------~~G~  612 (954)
T PRK05367        542 ELIDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAV---------MAGM  612 (954)
T ss_pred             HHHHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHH---------HCCC
Confidence            347789999999999988744 45667777666644431   3444    48889999977655333         3488


Q ss_pred             eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----
Q psy5413         173 LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL----  248 (285)
Q Consensus       173 ~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~----  248 (285)
                      +++.++.+.++.+|+++|++++++    +..++++|++++|+..+ +...|   +++|+++||++|+++++|+++.    
T Consensus       613 ~vv~v~~d~~G~iD~~~L~~~i~~----~~~~la~V~it~pst~G-~~e~~---I~eI~~i~h~~G~~v~VDgA~~~al~  684 (954)
T PRK05367        613 KVVVVACDENGNIDLDDLRAKAEE----HADNLAAIMITYPSTHG-VFEET---IREICEIVHEHGGQVYLDGANMNAQV  684 (954)
T ss_pred             EEEEECCCCCCCcCHHHHHHHHhc----cCCCeEEEEEEcCCCCe-eecCC---HHHHHHHHHHcCCEEEEECcChhhcc
Confidence            999999877889999999999976    23368899998888762 44478   9999999999999999999986    


Q ss_pred             Chhh-hcccCCeEEEecccccCccee------EEeecCccc
Q psy5413         249 PLAE-VCASVDTVMFCLSKGLGAPVG------SILAGPEEF  282 (285)
Q Consensus       249 ~~~~-~~~~~dv~~~s~sK~l~~p~g------g~~~~~~~~  282 (285)
                      ++.. ...++|++++++||||+.|.|      |++..++++
T Consensus       685 ~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l  725 (954)
T PRK05367        685 GLARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHL  725 (954)
T ss_pred             CCCChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccc
Confidence            2222 235899999999999876553      455544443

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.62  E-value=7.3e-15  Score=142.22  Aligned_cols=154  Identities=21%  Similarity=0.217  Sum_probs=119.9

Q ss_pred             hhHHHHHHHHHhHcCCCcE-EEcCChHHHHHHHHHHccc---c---C-CCeEEecCCcceeeecccccccccccccccce
Q psy5413         101 PTCKELQEKAAKLAGKEAA-IFVPSGTMGNLIAIMTHCD---R---R-DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRV  172 (285)
Q Consensus       101 ~~~~~l~~~la~~~g~~~~-~~~~~Gs~a~~~al~~~~~---~---~-g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~  172 (285)
                      +...++++.+++++|.+.+ ++.++|+.|..+++.+...   .   + .++++++...|++....   +      ...|.
T Consensus       543 q~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpas---a------~~~Gi  613 (954)
T PRK12566        543 AMIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPAS---A------QMAGM  613 (954)
T ss_pred             HHHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHH---H------HHCCC
Confidence            4588999999999999987 5566888888777776432   1   2 24577888888665432   2      34499


Q ss_pred             eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----
Q psy5413         173 LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL----  248 (285)
Q Consensus       173 ~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~----  248 (285)
                      +++.++.++++.+|+++|++++++    +.+++++|++++|++.+ +...+   +++|+++||++|+++++|.++.    
T Consensus       614 eVv~Vp~D~~G~iDle~L~a~I~~----~~~~laaVmiT~Pnt~G-v~e~~---V~eI~~iah~~Galv~vDgA~~~a~~  685 (954)
T PRK12566        614 RVVIVECDPDGNVDLDDLKAKAAA----AGDRLSCLMITYPSTHG-VYEEG---IREICEVVHQHGGQVYMDGANLNAQV  685 (954)
T ss_pred             EEEEeccCCCCCcCHHHHHHHhhc----cCCCEEEEEEEecCcCc-eecch---HHHHHHHHHHcCCEEEEEeeChhhcc
Confidence            999999878899999999999985    23489999999988763 44444   9999999999999999999987    


Q ss_pred             Chh-hhcccCCeEEEecccccCcc
Q psy5413         249 PLA-EVCASVDTVMFCLSKGLGAP  271 (285)
Q Consensus       249 ~~~-~~~~~~dv~~~s~sK~l~~p  271 (285)
                      .+. ....++|++.+++||||++|
T Consensus       686 ~l~~Pg~~GADi~~~s~HKtf~~P  709 (954)
T PRK12566        686 GLARPADIGADVSHMNLHKTFCIP  709 (954)
T ss_pred             CCCChhhcCCCEEEecCCcccCcC
Confidence            222 13468999999999999864

>KOG0256|consensus

Probab=99.62  E-value=1.9e-14  Score=125.33  Aligned_cols=174  Identities=18%  Similarity=0.126  Sum_probs=133.4

Q ss_pred             ccCChhHHHHHHHHHhHcC----------CCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccccccccccc
Q psy5413          97 YLEDPTCKELQEKAAKLAG----------KEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVY  166 (285)
Q Consensus        97 y~~~~~~~~l~~~la~~~g----------~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~  166 (285)
                      |....+...+++.+|++++          .++.+++++++.|+++....++ .||+..+++.+|+.-....  +.     
T Consensus       117 fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLa-dpgdafLvPtPyY~gfdrd--l~-----  188 (471)
T KOG0256|consen  117 FQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLA-DPGDAFLVPTPYYPGFDRD--LR-----  188 (471)
T ss_pred             cccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhc-CCCceeeecCCCCCccccc--ce-----
Confidence            4444557788999988863          2456899999999999999987 5999999998887544321  11     


Q ss_pred             ccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEe
Q psy5413         167 SQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD  244 (285)
Q Consensus       167 ~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D  244 (285)
                       -..|++++++...  ..++++.++||+++++..+ .+.+++.|++.+|+||- |.+++++.|..+.+.|.+++|.||+|
T Consensus       189 -~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~-~~~kVkGvlitNPsNPL-G~~~~~e~L~~ll~Fa~~kniHvI~D  265 (471)
T KOG0256|consen  189 -WRTGVEIVPVHCSSSNGFQITVEALEAALNQARK-LGLKVKGVLITNPSNPL-GTTLSPEELISLLNFASRKNIHVISD  265 (471)
T ss_pred             -eccCceEEEEEeecCCCccccHHHHHHHHHHHHH-hCCceeEEEEeCCCCCC-CCccCHHHHHHHHHHHhhcceEEEee
Confidence             2348898888764  3567999999999876433 45589999999999999 99999999999999999999999999


Q ss_pred             CccC----------Chhhhcc----cCCeE--EEecccccCc--ceeEEeecCcc
Q psy5413         245 GARL----------PLAEVCA----SVDTV--MFCLSKGLGA--PVGSILAGPEE  281 (285)
Q Consensus       245 ea~~----------~~~~~~~----~~dv~--~~s~sK~l~~--p~gg~~~~~~~  281 (285)
                      |+|+          ++.....    ..|-+  +.++||-||.  .+-|++-+..+
T Consensus       266 EIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne  320 (471)
T KOG0256|consen  266 EIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNE  320 (471)
T ss_pred             hhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecCh
Confidence            9988          2222222    23433  8999998877  46677766543

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.61  E-value=1.4e-14  Score=136.35  Aligned_cols=191  Identities=17%  Similarity=0.156  Sum_probs=132.0

Q ss_pred             cHHHHHHHHhcccC--CCCccCChhHHHHHHHH----HhHcCCCc--EEEcCChHHHHHHHHHHccccC--------C--
Q psy5413          80 TMEMKNYMFNCEVG--DDVYLEDPTCKELQEKA----AKLAGKEA--AIFVPSGTMGNLIAIMTHCDRR--------D--  141 (285)
Q Consensus        80 ~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~l----a~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~--------g--  141 (285)
                      .|.++..+.....+  ...+..+|...++|+.+    ++++|.+.  +.++++||+||..++.+++...        .  
T Consensus        96 ~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~  175 (608)
T TIGR03811        96 MPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKP  175 (608)
T ss_pred             HHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccc
Confidence            45666665544443  34555677777777665    55567654  5899999999999998876321        0  


Q ss_pred             -----------------------------------------C------eEEecCCcceeeecccccccccccccccceee
Q psy5413         142 -----------------------------------------S------EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLM  174 (285)
Q Consensus       142 -----------------------------------------~------~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~  174 (285)
                                                               .      .++++...|.+..++..+.      ......+
T Consensus       176 ~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~il------GlG~~~v  249 (608)
T TIGR03811       176 ELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADII------GIGLDQV  249 (608)
T ss_pred             cccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHc------CCCcccE
Confidence                                                     0      3666777798888766555      2333368


Q ss_pred             eeeecCCCCCCCHHHHHHHhcccccccCCceEE-EEEecccCCCCeeeCCHHHHHHHHHHH---HHcCC--eEEEeCccC
Q psy5413         175 RGVTNQKDGTFDLDEMEAKFSTADNIHCASTSL-VCVENTHNYCGGTVLPMQWLRELKARC---QEHNI--PVHMDGARL  248 (285)
Q Consensus       175 ~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~-v~i~~~~n~~gG~~~~~~~l~~i~~la---~~~gi--~li~Dea~~  248 (285)
                      +.+|.++++.+|+++|++.|++..+. +..+-+ |.+...++.  |.+.|   |++|+++|   +++|+  |+|+|+|++
T Consensus       250 v~VpvD~~~rmd~~~L~~~I~~~~~~-g~p~~~VVataGTT~~--GaiDp---l~eI~~l~~~~~~~gl~~~lHVDAAyG  323 (608)
T TIGR03811       250 IPVPVDSNYRMDINELEKIIRKLAAE-KTPILGVVGVVGSTEE--GAVDG---IDKIVALRNKLMKEGIYFYLHVDAAYG  323 (608)
T ss_pred             EEeecCCCCcCCHHHHHHHHHHHHhc-CCCeEEEEEEcCCcCC--cccCC---HHHHHHHHHHHHHcCCceeEeeecccc
Confidence            89998888999999999999764332 324444 444445554  99999   66666666   78998  699999988


Q ss_pred             Chh---h---------------------------------------hcccCCeEEEecccccCc--ceeEEeecCccc
Q psy5413         249 PLA---E---------------------------------------VCASVDTVMFCLSKGLGA--PVGSILAGPEEF  282 (285)
Q Consensus       249 ~~~---~---------------------------------------~~~~~dv~~~s~sK~l~~--p~gg~~~~~~~~  282 (285)
                      +..   .                                       ..+++|.++..+||++..  +.|++++.++++
T Consensus       324 G~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~  401 (608)
T TIGR03811       324 GYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRM  401 (608)
T ss_pred             chhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHH
Confidence            532   0                                       125789999999999888  456667776653

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>KOG1403|consensus

Probab=99.59  E-value=2.1e-15  Score=126.38  Aligned_cols=231  Identities=13%  Similarity=0.142  Sum_probs=147.2

Q ss_pred             CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC---CCCccCChh
Q psy5413          26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG---DDVYLEDPT  102 (285)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~---~~~y~~~~~  102 (285)
                      .|..++++..-..++..+..+.+++..-.+-                    +++||+|.+|...++..   ..+|-.++.
T Consensus        29 DP~kivRaq~QYmfDE~g~~yLDCInNVaHv--------------------ghchp~VV~A~~kQmat~~tN~RFlhd~l   88 (452)
T KOG1403|consen   29 DPLKIVRAQGQYMFDEEGTRYLDCINNVAHV--------------------GHCHPEVVRAGAKQMATISTNNRFLHDEL   88 (452)
T ss_pred             CchhhehhccceeeccCcccHHHHhhhhhhc--------------------ccCCHHHHHHHHHHHhHhcccchhhHHHH
Confidence            3555555555555555555555555444442                    67999999998876652   446666665


Q ss_pred             HHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCC--CeEEecCCcceeeeccccccccccccccc---ceeeeee
Q psy5413         103 CKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRD--SEIIVGDCSHIMLWEQGGASQTSVYSQIG---RVLMRGV  177 (285)
Q Consensus       103 ~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g--~~vi~~~~~h~~~~~~~~~~~~~~~~~~~---g~~~~~~  177 (285)
                      ..-.++..+.+.+..-++|+||||+||..|++++.+.++  |.|.++..||+.......++.. .|....   ....+.+
T Consensus        89 v~cA~~l~stlPeLsvc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPY-KF~~g~~v~kpd~VHV  167 (452)
T KOG1403|consen   89 VQCARTLTSTLPELSVCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPY-KFNQGGGVAKPDYVHV  167 (452)
T ss_pred             HHHHHHHhhcCCCceEEEEecCCchhhHHHHHHHHhhcccCceEEEechhccceeeeeeccce-eccCCCCcCCCceeEe
Confidence            555666666777778889999999999999999876544  4455677888766543333210 011111   1122222


Q ss_pred             ---ecCCCC-------------CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC-CHHHHHHHHHHHHHcCCe
Q psy5413         178 ---TNQKDG-------------TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL-PMQWLRELKARCQEHNIP  240 (285)
Q Consensus       178 ---~~~~~~-------------~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~-~~~~l~~i~~la~~~gi~  240 (285)
                         |....+             ..-.+.+++.+++ -...+..+++.+.|..++-+ |.+. |.++++++++..+.+|.+
T Consensus       168 APcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d-~~~~g~gvAAfiAEslQSCG-GQiiPPagYFq~Va~~Vr~aGGv  245 (452)
T KOG1403|consen  168 APCPDVYRGKFRDKMYPDADMGALYADPVKEICQD-QLAKGQGVAAFIAESLQSCG-GQIIPPAGYFQAVADAVRSAGGV  245 (452)
T ss_pred             cCCccccccccccccCCcccchhhhhhHHHHHHHH-HHhcCCcHHHHHHHHHHhcC-CcccCchhHHHHHHHHHhcCCCe
Confidence               211111             1112455555543 22234568899999988766 6655 468999999999999999


Q ss_pred             EEEeCccCChhhhc------ccCCeE--EEecccccCc--ceeEEeecC
Q psy5413         241 VHMDGARLPLAEVC------ASVDTV--MFCLSKGLGA--PVGSILAGP  279 (285)
Q Consensus       241 li~Dea~~~~~~~~------~~~dv~--~~s~sK~l~~--p~gg~~~~~  279 (285)
                      +|.||++.++....      +-+|++  +.++.|.+|.  |.+++++++
T Consensus       246 ~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmGNGhPVa~Vattk  294 (452)
T KOG1403|consen  246 CIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMGNGHPVAAVATTK  294 (452)
T ss_pred             EEeehhhhcccccchhhhhhhhhccccchheecccCCCCCeeeEEeccH
Confidence            99999988554332      234555  7778899988  988877654

>PRK15029 arginine decarboxylase; Provisional

Probab=99.58  E-value=2e-14  Score=137.88  Aligned_cols=168  Identities=14%  Similarity=0.069  Sum_probs=126.6

Q ss_pred             CCccCChhHHHHHHHHHhHcCCCcEE-EcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccccccccccccccccee
Q psy5413          95 DVYLEDPTCKELQEKAAKLAGKEAAI-FVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVL  173 (285)
Q Consensus        95 ~~y~~~~~~~~l~~~la~~~g~~~~~-~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~  173 (285)
                      +.+.+.-...+.++..|+.+|.++.+ ++||.|.+|.+++.+++ ++||.|+++..+|-+...+..++         |..
T Consensus       199 ~L~~p~G~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~-~~gd~Vlv~RN~HKSv~~al~L~---------ga~  268 (755)
T PRK15029        199 SLLDHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACM-TDNDVVVVDRNCHKSIEQGLILT---------GAK  268 (755)
T ss_pred             CCCCCCcHHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHc---------CCe
Confidence            34445556999999999999999885 45555677888888877 69999999999999887755555         667


Q ss_pred             eeeeecCC--C---CCCC-----HHHHHHHhcccccc---cCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCe
Q psy5413         174 MRGVTNQK--D---GTFD-----LDEMEAKFSTADNI---HCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIP  240 (285)
Q Consensus       174 ~~~~~~~~--~---~~~d-----~~~l~~~i~~~~~~---~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~  240 (285)
                      .+.++...  .   +.++     ++.++++|++++..   .+.+++++++++|+..  |.+++   +++|+++|+++|++
T Consensus       269 Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~--Gv~~d---i~~I~~~~h~~~~~  343 (755)
T PRK15029        269 PVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYD--GVCYN---AKEAQDLLEKTSDR  343 (755)
T ss_pred             EEEecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCc--ceeeC---HHHHHHHHHhcCCe
Confidence            66664321  1   1234     89999999775322   1235569999999988  99999   99999999999999


Q ss_pred             EEEeCccCC-------h---hhh-----c-ccCC-eEEEecccccCc-ceeEEee
Q psy5413         241 VHMDGARLP-------L---AEV-----C-ASVD-TVMFCLSKGLGA-PVGSILA  277 (285)
Q Consensus       241 li~Dea~~~-------~---~~~-----~-~~~d-v~~~s~sK~l~~-p~gg~~~  277 (285)
                      |++||||+.       +   ..+     . .++| +++-|.||.|++ ..++++-
T Consensus       344 llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LH  398 (755)
T PRK15029        344 LHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIH  398 (755)
T ss_pred             EEEECccccccccCccccccccccccccccCCCceEEEEchhhcccchhhhhhhe
Confidence            999999871       1   111     1 4688 779999999998 5555553

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.54  E-value=6.7e-14  Score=122.88  Aligned_cols=153  Identities=24%  Similarity=0.283  Sum_probs=123.0

Q ss_pred             hhHHHHHHHHHhHcCCCcE-EEcCChHHHHHHHHHHcc---ccCC----CeEEecCCcceeeecccccccccccccccce
Q psy5413         101 PTCKELQEKAAKLAGKEAA-IFVPSGTMGNLIAIMTHC---DRRD----SEIIVGDCSHIMLWEQGGASQTSVYSQIGRV  172 (285)
Q Consensus       101 ~~~~~l~~~la~~~g~~~~-~~~~~Gs~a~~~al~~~~---~~~g----~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~  172 (285)
                      ....+|++.|++..|.+.+ +..++|+++-.+.+.+..   ..+|    +.+|+++..|+......+++         |.
T Consensus       109 ~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~---------G~  179 (496)
T COG1003         109 ELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMA---------GF  179 (496)
T ss_pred             HHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhc---------Cc
Confidence            4477899999999999987 778888888776665532   2234    35888999998877666666         99


Q ss_pred             eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----
Q psy5413         173 LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL----  248 (285)
Q Consensus       173 ~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~----  248 (285)
                      +++.++.++++.+|+++|++++.+       +++++++++|+--  |..  .+.+++|+++.|++|..|..|+|-.    
T Consensus       180 ~VV~V~~~~~G~VDlddLk~k~~~-------~~AalMiTnPsT~--GvF--E~~I~ei~~ivH~~Gg~vY~DGANlNA~v  248 (496)
T COG1003         180 KVVVVKCDENGNVDLDDLRAKAED-------NLAALMITNPSTL--GVF--EEDIREICEIVHEAGGQVYYDGANLNAIV  248 (496)
T ss_pred             eEEEEecCCCCCccHHHHHHHhcc-------ceeEEEeccCccc--ccc--hhhHHHHHHHHHHcCCEEEecCcchhhhh
Confidence            999999999999999999999987       8999999998843  443  4569999999999999999999955    


Q ss_pred             Chh-hhcccCCeEEEecccccCccee
Q psy5413         249 PLA-EVCASVDTVMFCLSKGLGAPVG  273 (285)
Q Consensus       249 ~~~-~~~~~~dv~~~s~sK~l~~p~g  273 (285)
                      +.. .-..++|++-+.+||+|+.|.|
T Consensus       249 G~~rPGd~G~DV~HlNLHKTF~iPHG  274 (496)
T COG1003         249 GLARPGDMGFDVVHLNLHKTFCIPHG  274 (496)
T ss_pred             ccccccccccceEEeecccccccCCC
Confidence            222 2235899999999999877544

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.53  E-value=9.9e-14  Score=136.37  Aligned_cols=173  Identities=14%  Similarity=0.089  Sum_probs=117.0

Q ss_pred             hhHHHHHHHHHhHcCCC--c--EEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeee
Q psy5413         101 PTCKELQEKAAKLAGKE--A--AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRG  176 (285)
Q Consensus       101 ~~~~~l~~~la~~~g~~--~--~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~  176 (285)
                      ..+.+.|+.+++++|.+  .  ++|+.|+|+|+..++..+..++|++|++....|.+......++      ...|.++..
T Consensus        78 ~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a------~~~G~~v~~  151 (805)
T PLN02724         78 DTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYA------LEKGAAAIA  151 (805)
T ss_pred             HHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHH------HHcCCeEEe
Confidence            45889999999999963  2  4899999999999988864467899998777776543322222      344777777


Q ss_pred             eecC--------CCCCCCH--HHHHHHhccc---ccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH---c---
Q psy5413         177 VTNQ--------KDGTFDL--DEMEAKFSTA---DNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE---H---  237 (285)
Q Consensus       177 ~~~~--------~~~~~d~--~~l~~~i~~~---~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~---~---  237 (285)
                      ++.+        ..+.+++  ++|++.+++.   .....+++++|.+.+.+|.+ |.+.|   ++++.++++.   +   
T Consensus       152 v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~t-G~i~p---i~~i~~~~~~~~~~~~~  227 (805)
T PLN02724        152 VDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFS-GAKFP---LDLVKLIKDNQHSNFSK  227 (805)
T ss_pred             ccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCC-CCcCC---HHHHHHHHHhccccccc
Confidence            7653        2233333  5566654210   00112367899999999999 99999   5555443332   2   


Q ss_pred             --CCeEEEeCccC----ChhhhcccCCeEEEecccccCcce-eEEeecCcccc
Q psy5413         238 --NIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGAPV-GSILAGPEEFI  283 (285)
Q Consensus       238 --gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~p~-gg~~~~~~~~i  283 (285)
                        ++++++|.+|+    .+..-..++|++++|+|||+|+|. .|++..+++++
T Consensus       228 ~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G~G~L~vr~~~~  280 (805)
T PLN02724        228 SGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPTGLGALLVRRDAA  280 (805)
T ss_pred             CcceEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCCCceEEEEehhhh
Confidence              35799999988    222223589999999999999875 35665555543

>KOG1357|consensus

Probab=99.52  E-value=4.6e-14  Score=124.22  Aligned_cols=198  Identities=25%  Similarity=0.267  Sum_probs=148.3

Q ss_pred             eeeeeccCCcCC-------CcHHHHHHHHhcccC----CCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHH
Q psy5413          67 RTVDIRSDTISK-------PTMEMKNYMFNCEVG----DDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMT  135 (285)
Q Consensus        67 ~~~~~~~~~~~~-------~~~~v~~a~~~~~~~----~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~  135 (285)
                      +.+++.+-|+-+       +.+.+.+++......    ....+....+.++++.+|++.|+++++.+.-|-..|...+-.
T Consensus       137 ~~lNlgSYNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~e~a~vF~mGf~TNs~~~p~  216 (519)
T KOG1357|consen  137 RCLNLGSYNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGVEDAIVFSMGFATNSMNIPS  216 (519)
T ss_pred             eeeeecccccccccccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcCCcceEEEeccccccccCcce
Confidence            455565555544       788999998876542    223345667999999999999999998888888888888877


Q ss_pred             ccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCce------EEEE
Q psy5413         136 HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCAST------SLVC  209 (285)
Q Consensus       136 ~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~------~~v~  209 (285)
                      ++ .+|.-|+.+...|.+......++         |..++.+..+     |+++||+.+++....+.++|      -+|+
T Consensus       217 l~-~~gsLIiSDelNHaSi~~GaRLS---------gAtiRVfkHN-----dm~~LEr~Lrd~I~~gqP~Thrp~kki~ii  281 (519)
T KOG1357|consen  217 LL-GKGSLIISDELNHASLITGARLS---------GATTRVFRHN-----DMQGLERLLRDAIVYGQPKTHRPWKKILIC  281 (519)
T ss_pred             ee-cCCcceeeccccchheecccccc---------CceEEEEecC-----CHHHHHHHHHHHHhcCCCCcCCcchheeee
Confidence            77 47776777778898876655565         7787777764     77888877765422222222      3677


Q ss_pred             EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh-----hhc-------ccCCeEEEecccccCcceeEEe
Q psy5413         210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA-----EVC-------ASVDTVMFCLSKGLGAPVGSIL  276 (285)
Q Consensus       210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~-----~~~-------~~~dv~~~s~sK~l~~p~gg~~  276 (285)
                      ++...+.- |.++.   |+++.+++|+|...|+.||+|+ +..     ..+       ..+|+...++.|.+++ .||++
T Consensus       282 vegiysmE-g~iv~---Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga-~GGyi  356 (519)
T KOG1357|consen  282 VEGIYSME-GTIVD---LPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGA-AGGYI  356 (519)
T ss_pred             eccceecc-Ceecc---cHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhccc-cccee
Confidence            77777776 89999   9999999999999999999988 111     111       4567889999999987 79999


Q ss_pred             ecCccccc
Q psy5413         277 AGPEEFIQ  284 (285)
Q Consensus       277 ~~~~~~i~  284 (285)
                      ++++++++
T Consensus       357 agsk~lid  364 (519)
T KOG1357|consen  357 AGSKELID  364 (519)
T ss_pred             cCcHHHHh
Confidence            99998876

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=99.50  E-value=7.9e-15  Score=127.95  Aligned_cols=181  Identities=23%  Similarity=0.290  Sum_probs=42.1

Q ss_pred             cHHHHHHHHhcccCCC--Ccc-----CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcce
Q psy5413          80 TMEMKNYMFNCEVGDD--VYL-----EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHI  152 (285)
Q Consensus        80 ~~~v~~a~~~~~~~~~--~y~-----~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~  152 (285)
                      ++++.+++.+...+..  -|.     -...+..+++.++.++|++.++++|+...|++.++..+.  +|++||++..--.
T Consensus        19 ~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~~ltgAeaA~VvNnnaAAv~L~l~~la--~~~EvIvsRGelV   96 (367)
T PF03841_consen   19 SEEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLCELTGAEAALVVNNNAAAVLLALNTLA--KGKEVIVSRGELV   96 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence            5666777666554311  111     111256788999999999999999999999999998875  5777887532111


Q ss_pred             ----e--eecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCee----eC
Q psy5413         153 ----M--LWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT----VL  222 (285)
Q Consensus       153 ----~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~----~~  222 (285)
                          +  .....         ...|.+++.+-.+.  ...+++++++|++       +|++++--+++|.. ..    ..
T Consensus        97 eiGgsFRip~vm---------~~sGa~lvEVGttN--~t~~~Dye~AI~e-------~Ta~ll~Vh~Sn~~-i~GFt~~~  157 (367)
T PF03841_consen   97 EIGGSFRIPDVM---------RQSGARLVEVGTTN--RTHLSDYEKAITE-------NTAALLKVHTSNFR-IQGFTGEV  157 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccc---------cccccccccccccc--ccccccccccccc-------cccccccccccccc-cccccccc
Confidence                1  11111         24588888887643  3468899999998       89999888877763 11    34


Q ss_pred             CHHHHHHHHHHHHHcCCeEEEeCccCC--------------hh-hhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         223 PMQWLRELKARCQEHNIPVHMDGARLP--------------LA-EVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       223 ~~~~l~~i~~la~~~gi~li~Dea~~~--------------~~-~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      +   ++++++++++|++++|+|..-+.              +. .+..++|++++|..|.||||.+|+++|++++|+
T Consensus       158 ~---~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQaGiI~Gkk~lI~  231 (367)
T PF03841_consen  158 S---LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQAGIIVGKKELIE  231 (367)
T ss_dssp             ------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S-EEEEEEHHHHH
T ss_pred             c---HHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCCeEEEEeCHHHHH
Confidence            4   99999999999999999987531              11 123689999999999999999999999999986

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.49  E-value=1.7e-13  Score=124.02  Aligned_cols=182  Identities=13%  Similarity=0.046  Sum_probs=124.8

Q ss_pred             CCCcHH-HHHHHHhcccC--CCCccCChhHHHHHHHHHhHcCCC---cEEEc-CChHHHHHHHHHHccccCCCeEEecCC
Q psy5413          77 SKPTME-MKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAGKE---AAIFV-PSGTMGNLIAIMTHCDRRDSEIIVGDC  149 (285)
Q Consensus        77 ~~~~~~-v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~~---~~~~~-~~Gs~a~~~al~~~~~~~g~~vi~~~~  149 (285)
                      ...+|. |++++.+...+  +........+.+.++.++++++.+   .++|+ .|||.+++.++..+....+..++. ..
T Consensus        21 ~~~~~~~v~~a~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~-~g   99 (378)
T PRK03080         21 CKKRPGWQLEALADALLGRSHRQKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLA-WE   99 (378)
T ss_pred             cCCChHHHHHHHHhhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCCCCcceEEE-eC
Confidence            445666 99999876654  333223456889999999999963   35666 499999999999886312344444 44


Q ss_pred             cceeeecccccccccccccccce-eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHH
Q psy5413         150 SHIMLWEQGGASQTSVYSQIGRV-LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLR  228 (285)
Q Consensus       150 ~h~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~  228 (285)
                      .|..-+.. ...      +..|. ++..++.+++...|+++++    .        ++.|.+++..+.+ |.+.|   ++
T Consensus       100 ~f~~~~~~-~~~------~~~g~~~v~~~~~~~g~~~d~~~i~----~--------~~~V~~~h~~t~t-G~~~p---i~  156 (378)
T PRK03080        100 SFGSKWAT-DVV------KQLKLEDPRVLEADYGSLPDLSAVD----F--------DRDVVFTWNGTTT-GVRVP---VA  156 (378)
T ss_pred             HHHHHHHH-HHH------hhcCCCCceEeccCCCCCCCHhhcC----C--------CCCEEEEecCCcc-ceecc---ch
Confidence            44432110 011      23466 7777776566667776622    2        3468888888888 99999   99


Q ss_pred             HHHHHHHHcCCeEEEeCccC-Chhhh-cccCCeEEEecccccCcce-eEEeecCccccc
Q psy5413         229 ELKARCQEHNIPVHMDGARL-PLAEV-CASVDTVMFCLSKGLGAPV-GSILAGPEEFIQ  284 (285)
Q Consensus       229 ~i~~la~~~gi~li~Dea~~-~~~~~-~~~~dv~~~s~sK~l~~p~-gg~~~~~~~~i~  284 (285)
                      +|++  ++||+++++|.+++ +...+ ...+|+++++.+|||++|. .|++..+++.++
T Consensus       157 ~I~~--~~~g~~~vVDa~qs~G~~pidv~~iD~~~~s~~K~l~~P~G~g~l~v~~~~~~  213 (378)
T PRK03080        157 RWIG--ADREGLTICDATSAAFALPLDWSKLDVYTFSWQKVLGGEGGHGMAILSPRAVE  213 (378)
T ss_pred             hhcc--ccCCCeEEEecccccccCCCCHHHCcEEEEehhhhCCCCCceEEEEECHHHHH
Confidence            9988  88999999999988 22221 2347999999999999954 577777776654

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.46  E-value=6.7e-13  Score=126.35  Aligned_cols=167  Identities=11%  Similarity=0.095  Sum_probs=121.8

Q ss_pred             CccCChhHHHHHHHHHhHcCCCcEE-EcCChHHHHHHHHHHccccCCCeEEecCCcceeeecc-ccccccccccccccee
Q psy5413          96 VYLEDPTCKELQEKAAKLAGKEAAI-FVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVL  173 (285)
Q Consensus        96 ~y~~~~~~~~l~~~la~~~g~~~~~-~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~  173 (285)
                      .....-...+.++..|+.+|.++.+ ++||.|.+|.+++.+++ .+||.|+++..+|-+.... ..++         |..
T Consensus       169 L~~~eG~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~-~~Gd~VLvdRN~HKSv~hgaLiLs---------Ga~  238 (720)
T PRK13578        169 LLIHEGAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALL-TPGDLVLFDRNNHKSNHHGALIQA---------GAT  238 (720)
T ss_pred             CCCCChHHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHHc---------CCe
Confidence            3334455899999999999999885 55555778888888877 6999999999999887653 3344         667


Q ss_pred             eeeeecCC--C---CCCC-----HHHHHHHhcccc-c--ccCCceEEEEEecccCCCCeeeCCHHHHHHHHHH-HHHcCC
Q psy5413         174 MRGVTNQK--D---GTFD-----LDEMEAKFSTAD-N--IHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR-CQEHNI  239 (285)
Q Consensus       174 ~~~~~~~~--~---~~~d-----~~~l~~~i~~~~-~--~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~l-a~~~gi  239 (285)
                      .+.++...  .   +.++     .+.|+++|+++. +  ......+++++++|+..  |.+++   +++|+++ |+.++ 
T Consensus       239 PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYd--G~~yd---i~~I~~~~~h~~~-  312 (720)
T PRK13578        239 PVYLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYD--GTIYN---ARQVVDKIGHLCD-  312 (720)
T ss_pred             EEEeeccccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCc--ceeec---HHHHHHHhhccCC-
Confidence            66665322  1   1244     455999987741 1  01112689999999988  99999   9999998 68888 


Q ss_pred             eEEEeCccC------Ch------hhhcccCC----eEEEecccccCc-ceeEEeec
Q psy5413         240 PVHMDGARL------PL------AEVCASVD----TVMFCLSKGLGA-PVGSILAG  278 (285)
Q Consensus       240 ~li~Dea~~------~~------~~~~~~~d----v~~~s~sK~l~~-p~gg~~~~  278 (285)
                      +|++||||+      +.      ..+..++|    +++-|.||.|++ ..++++-.
T Consensus       313 ~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHv  368 (720)
T PRK13578        313 YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHK  368 (720)
T ss_pred             cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhc
Confidence            999999977      11      11335778    889999999998 55555533

>KOG2862|consensus

Probab=99.44  E-value=6.7e-13  Score=111.97  Aligned_cols=186  Identities=17%  Similarity=0.127  Sum_probs=139.6

Q ss_pred             CCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcE---EEcCChHHHHHHHHHHccccCCCeEEecCCccee
Q psy5413          77 SKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAA---IFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIM  153 (285)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~---~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~  153 (285)
                      ...+++|++|+.....++..-..-....++.+-+...|.....   ++..+|..+.++|+..++ .+||++++....- .
T Consensus        26 snl~~~V~~A~~~~~lgh~sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~l-ePgd~vLv~~~G~-w  103 (385)
T KOG2862|consen   26 SNLSGRVQEAMSRPSLGHMSPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLL-EPGDNVLVVSTGT-W  103 (385)
T ss_pred             cCCCHHHHHhhcCCccccCCHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhc-CCCCeEEEEEech-H
Confidence            3457889999888777665443345577788888888765543   788899999999999988 4999877643221 1


Q ss_pred             eecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHH
Q psy5413         154 LWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR  233 (285)
Q Consensus       154 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~l  233 (285)
                      ...+.-+.      +.+|.++..++.+......+|.+++++.++      ++++|.+++.-..| |.+.|.  ++.+-++
T Consensus       104 g~ra~D~~------~r~ga~V~~v~~~~G~~~~le~i~~~lsqh------~p~~vfv~hgdsST-gV~q~~--~~~~g~l  168 (385)
T KOG2862|consen  104 GQRAADCA------RRYGAEVDVVEADIGQAVPLEEITEKLSQH------KPKAVFVTHGDSST-GVLQDL--LAISGEL  168 (385)
T ss_pred             HHHHHHHH------HhhCceeeEEecCcccCccHHHHHHHHHhc------CCceEEEEecCccc-cccchH--HHHHHHH
Confidence            11222233      567888888888777789999999999985      78999999977777 888883  5667789


Q ss_pred             HHHcCCeEEEeCccC----ChhhhcccCCeEEEecccccCcceeE-EeecC
Q psy5413         234 CQEHNIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGAPVGS-ILAGP  279 (285)
Q Consensus       234 a~~~gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~p~gg-~~~~~  279 (285)
                      |++|+.++++|.+-+    .+..-.+++|+......|.|++|.|- .++.+
T Consensus       169 c~k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~aP~GLsiisfS  219 (385)
T KOG2862|consen  169 CHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFS  219 (385)
T ss_pred             hhcCCeEEEEechhhcCCccceehhhcccEEEecchhhcCCCCCcceeecC
Confidence            999999999999965    33334579999999999999997663 44443

>KOG0634|consensus

Probab=99.43  E-value=2.4e-12  Score=113.15  Aligned_cols=177  Identities=12%  Similarity=0.098  Sum_probs=131.3

Q ss_pred             CccCChhHHHHHHHHHhHcCC--------C-cEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccccccccccc
Q psy5413          96 VYLEDPTCKELQEKAAKLAGK--------E-AAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVY  166 (285)
Q Consensus        96 ~y~~~~~~~~l~~~la~~~g~--------~-~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~  166 (285)
                      .|+...+..+|...+.+..+.        + ..+++++.+.+++.+++.++ .+|+.|++...++.....  .+      
T Consensus        95 QYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~-N~gd~vlie~~ty~~AL~--s~------  165 (472)
T KOG0634|consen   95 QYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLI-NRGDHVLIEEYTYPSALQ--SM------  165 (472)
T ss_pred             ccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhh-cCCCceEEecccchHHHH--hc------
Confidence            566666777888888776551        1 24788888999999999999 599999998776643322  11      


Q ss_pred             ccccceeeeeeecCCCCCCCHHHHHHHhccccc--ccCCceEEEEEec-ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEE
Q psy5413         167 SQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADN--IHCASTSLVCVEN-THNYCGGTVLPMQWLRELKARCQEHNIPVHM  243 (285)
Q Consensus       167 ~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~--~~~~~~~~v~i~~-~~n~~gG~~~~~~~l~~i~~la~~~gi~li~  243 (285)
                       +..|+.+++++.+.+ .+++|.|++.+..-+.  .+..+.+++++-+ -+||| |..++.+.-++|.++|++||+++|.
T Consensus       166 -~a~gv~~ipv~md~~-Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPT-G~tls~errk~iy~LArKyDfLIVe  242 (472)
T KOG0634|consen  166 -EALGVKIIPVKMDQD-GIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPT-GNTLSLERRKKIYQLARKYDFLIVE  242 (472)
T ss_pred             -cccCceEEeccccCC-CCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCC-CCccCHHHHHHHHHHHHHcCEEEEe
Confidence             245899999998444 4899999999865321  1234577887777 89999 9999999999999999999999999


Q ss_pred             eCccC----C------------h---hhh--------cccC--CeE-EEecccccCc-ceeEEeecCccccc
Q psy5413         244 DGARL----P------------L---AEV--------CASV--DTV-MFCLSKGLGA-PVGSILAGPEEFIQ  284 (285)
Q Consensus       244 Dea~~----~------------~---~~~--------~~~~--dv~-~~s~sK~l~~-p~gg~~~~~~~~i~  284 (285)
                      ||.|.    .            .   ...        ..+.  .|+ .-||||.++. .+-|++.+++-+++
T Consensus       243 DdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~  314 (472)
T KOG0634|consen  243 DDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLK  314 (472)
T ss_pred             cCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHHHH
Confidence            99966    1            0   001        1122  245 8999999887 78889999887665

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.43  E-value=4.6e-12  Score=106.54  Aligned_cols=203  Identities=20%  Similarity=0.199  Sum_probs=121.4

Q ss_pred             eeeeccCCcCCCcHHHHHHHHhccc----C------CCCccCChhHHHHHHHHHhHc----CC----CcEEEcCChHHHH
Q psy5413          68 TVDIRSDTISKPTMEMKNYMFNCEV----G------DDVYLEDPTCKELQEKAAKLA----GK----EAAIFVPSGTMGN  129 (285)
Q Consensus        68 ~~~~~~~~~~~~~~~v~~a~~~~~~----~------~~~y~~~~~~~~l~~~la~~~----g~----~~~~~~~~Gs~a~  129 (285)
                      .+.+..+|+. .-|+|.+.+++...    .      -..|...+....|-+.+++.+    |.    +...++++...+.
T Consensus        32 ~imLggGNPa-~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~f  110 (417)
T COG3977          32 AIMLGGGNPA-RIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAF  110 (417)
T ss_pred             ceeeCCCCcc-cChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccchH
Confidence            4666666654 35666666554321    1      135665555555555555554    43    2235555444555


Q ss_pred             HHHHHHccccC--CC--eEEec--CCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCC
Q psy5413         130 LIAIMTHCDRR--DS--EIIVG--DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCA  203 (285)
Q Consensus       130 ~~al~~~~~~~--g~--~vi~~--~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~  203 (285)
                      .-++..+..+.  |+  .|+.+  +.|-++..  ..+..+.+.+.....++..- ....++.|+++|+  +.+       
T Consensus       111 FYlfNlF~G~~sdG~~k~illPLaPeYiGY~d--~~l~~d~fVs~kP~iel~~~-g~FKY~vDF~~l~--i~e-------  178 (417)
T COG3977         111 FYLFNLFAGRRSDGTEKKILLPLAPEYIGYAD--AGLEEDLFVSAKPNIELLPA-GQFKYHVDFEHLH--IGE-------  178 (417)
T ss_pred             HHHHHHhcCccCCCcceeEeeccChhhccccc--cccCccceeeccCCcccccc-cceeeccCHHHcc--ccc-------
Confidence            55555543222  32  35553  22222211  11110111121122222221 1134578888876  444       


Q ss_pred             ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC-hh-------hhcccCCeE-EEeccc-ccCccee
Q psy5413         204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP-LA-------EVCASVDTV-MFCLSK-GLGAPVG  273 (285)
Q Consensus       204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~-~~-------~~~~~~dv~-~~s~sK-~l~~p~g  273 (285)
                      .+.+|+++-|+||| |.+...+++.+|.++|++||+++++|.+|+. +.       ...++-+++ |+|+|| +|-|-+.
T Consensus       179 ~~g~ic~SRPtNPT-GNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~w~~NiilC~SLSK~GLPG~R~  257 (417)
T COG3977         179 STGAICVSRPTNPT-GNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPLWNENIILCMSLSKLGLPGSRC  257 (417)
T ss_pred             ccceEEecCCCCCC-CCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccccccCCCCEEEEeehhhcCCCCcce
Confidence            78999999999999 8999999999999999999999999999992 21       123556666 999999 4555688


Q ss_pred             EEeecCccccc
Q psy5413         274 SILAGPEEFIQ  284 (285)
Q Consensus       274 g~~~~~~~~i~  284 (285)
                      |+++++++++.
T Consensus       258 GIiIane~viq  268 (417)
T COG3977         258 GIIIANEKVIQ  268 (417)
T ss_pred             eEEEccHHHHH
Confidence            89999887653

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=99.42  E-value=1.9e-12  Score=114.01  Aligned_cols=183  Identities=22%  Similarity=0.225  Sum_probs=132.6

Q ss_pred             CcHHHHHHHHhcccCCC--Ccc--C---ChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEec----
Q psy5413          79 PTMEMKNYMFNCEVGDD--VYL--E---DPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVG----  147 (285)
Q Consensus        79 ~~~~v~~a~~~~~~~~~--~y~--~---~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~----  147 (285)
                      .++++++++.+......  -|.  .   ..-..++.+..+...+.+.++.+++.+.|++.++.++.  .+++++++    
T Consensus        39 ~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~~~~aea~~ivnnn~aAVll~~~al~--~~~EvVis~g~l  116 (395)
T COG1921          39 YSPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCGLTGAEAAAIVNNNAAAVLLTLNALA--EGKEVVVSRGEL  116 (395)
T ss_pred             CCHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhcccchhheeeECCcHHHHHHHHhhhc--cCCeEEEEcccc
Confidence            47788888776554211  111  1   12244667777777788999999999999999998875  35566653    


Q ss_pred             -CCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHH
Q psy5413         148 -DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW  226 (285)
Q Consensus       148 -~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~  226 (285)
                       +.+|........++         |++++.+.....  ....+++.+|.+       ++++++-.+.+|..=-...+   
T Consensus       117 V~gg~~~v~d~~~~a---------G~~l~EvG~tn~--t~~~d~~~AIne-------~ta~llkV~s~~~~f~~~l~---  175 (395)
T COG1921         117 VEGGAFRVPDIIRLA---------GAKLVEVGTTNR--THLKDYELAINE-------NTALLLKVHSSNYGFTGMLS---  175 (395)
T ss_pred             ccCCCCChhHHHHHc---------CCEEEEecccCc--CCHHHHHHHhcc-------CCeeEEEEeecccccccccc---
Confidence             24565555544444         999998876433  478999999999       77777666655431023455   


Q ss_pred             HHHHHHHHHHcCCeEEEeCccC-------Chh-hhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         227 LRELKARCQEHNIPVHMDGARL-------PLA-EVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       227 l~~i~~la~~~gi~li~Dea~~-------~~~-~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      +++++++||+||+++++|.+-.       .+. .+..++|++++|..|.|+||.+|+++|++++|+
T Consensus       176 ~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPqaGii~GkKelI~  241 (395)
T COG1921         176 EEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGPQAGIIVGKKELIE  241 (395)
T ss_pred             HHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCCccceEechHHHHH
Confidence            8889999999999999999864       222 334689999999999999999999999999985

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=99.38  E-value=9.7e-12  Score=106.96  Aligned_cols=202  Identities=20%  Similarity=0.223  Sum_probs=145.9

Q ss_pred             CeeeeeccCCcCC-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccc----cC
Q psy5413          66 IRTVDIRSDTISK-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCD----RR  140 (285)
Q Consensus        66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~----~~  140 (285)
                      .-++|+-.++-++ .+.....+|   ..|+..|+.+..+..|++.+.+.+|.+..+-+.-|-.|-.+.+..++.    -+
T Consensus        46 dv~IDLLTDSGTgams~~qwaam---m~GDEAYagsrs~~~L~~avkdifGfq~~iPthQGRgAE~Il~~i~ik~~~~~p  122 (471)
T COG3033          46 DVFIDLLTDSGTGAMTDKQWAAM---MRGDEAYAGSRSYYALADAVKDIFGFQYTIPTHQGRGAENILIPILIKKGEQEP  122 (471)
T ss_pred             ceEEEeeccCCcccccHHHHHHH---hccchhhcccccHHHHHHHHHHhcCceeeeeccCCccHHHHHHHHHhhhccccC
Confidence            3456776665443 233333333   346788887888999999999999999888888888887777776652    13


Q ss_pred             CCeEEecCCcceeeecccccccccccccccceeeeeee----------cCCCCCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413         141 DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT----------NQKDGTFDLDEMEAKFSTADNIHCASTSLVCV  210 (285)
Q Consensus       141 g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i  210 (285)
                      |...++...+|+.+...-.        +..|...+.++          .+..+.+|++.|++.|++.   +.+++..|++
T Consensus       123 g~~~~~~sN~~FdTTr~h~--------~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidev---G~~nvp~I~~  191 (471)
T COG3033         123 GSKMVAFSNYHFDTTRGHI--------QINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEV---GADNVPYIVL  191 (471)
T ss_pred             CccccccccceecchhHHH--------HhcCCccccccccccccccccCCCCCccCHHHHHHHHHHh---CcccCcEEEE
Confidence            4445556677777654221        11233333322          2335678999999999874   4457889999


Q ss_pred             ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-----------------Chh----hhcccCCeEEEecccccC
Q psy5413         211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-----------------PLA----EVCASVDTVMFCLSKGLG  269 (285)
Q Consensus       211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-----------------~~~----~~~~~~dv~~~s~sK~l~  269 (285)
                      .-++|..||+.++.+.++++.++|++|||+++.|.++.                 +..    +..+++|-+++|.-|---
T Consensus       192 tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~l  271 (471)
T COG3033         192 TITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGL  271 (471)
T ss_pred             EEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccce
Confidence            88999989999999999999999999999999999955                 222    233688999999988644


Q ss_pred             cceeEEeecCcc
Q psy5413         270 APVGSILAGPEE  281 (285)
Q Consensus       270 ~p~gg~~~~~~~  281 (285)
                      .++||+++.+.+
T Consensus       272 vnmGGfl~~~D~  283 (471)
T COG3033         272 VNMGGFLCFKDD  283 (471)
T ss_pred             eccccEEEecCc
Confidence            479999987654

>KOG0633|consensus

Probab=99.37  E-value=4.9e-12  Score=104.45  Aligned_cols=162  Identities=14%  Similarity=0.061  Sum_probs=115.3

Q ss_pred             HHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCCC-eEEecCCcceeeecccccccccccccccceeeeeeec
Q psy5413         103 CKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRDS-EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN  179 (285)
Q Consensus       103 ~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g~-~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~  179 (285)
                      -.+++..++.--+.+.  ..+-.+.-+-+...+++.+ -||+ +|+..++++.......++.         ++.++.+|.
T Consensus        71 nk~ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~c-~PGkeKIl~cPPtysMY~v~A~iN---------d~eVvkvpl  140 (375)
T KOG0633|consen   71 NKRLSDALAQDKPLTSDNICVGVGSDELIDLIIRCVC-DPGKEKILDCPPTYSMYVVDAAIN---------DAEVVKVPL  140 (375)
T ss_pred             cchhhhhcccCCCCCccceEEecCcHHHHHHHHhhee-cCCccceeecCCcceeEEEEeecC---------CceEEEecC
Confidence            3444444444333333  3444445567788888877 5885 5666666665554444444         899999999


Q ss_pred             CCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh------hhh
Q psy5413         180 QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL------AEV  253 (285)
Q Consensus       180 ~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~------~~~  253 (285)
                      +++++++.+++.+.++.+     ..++++++++|.||+ |.....+.+.+|.+.=  .++++++||+|..+      ..+
T Consensus       141 ~pdF~lnvdai~evl~~d-----s~iK~~F~tSPgNPt-g~~ik~~di~KiLe~p--~nglVVvDEAYidFsg~~S~~~l  212 (375)
T KOG0633|consen  141 NPDFSLNVDAIAEVLELD-----SKIKCIFLTSPGNPT-GSIIKEDDILKILEMP--DNGLVVVDEAYIDFSGVESRMKL  212 (375)
T ss_pred             CCCccccHHHHHHHHhcc-----ccceEEEEcCCCCCC-cccccHHHHHHHHhCC--CCcEEEEeeeeEeeccccccchH
Confidence            999999999999999762     268999999999999 9999988899888743  37899999998822      222


Q ss_pred             -cccCCeE-EEecccccCc--ceeEEeecCccc
Q psy5413         254 -CASVDTV-MFCLSKGLGA--PVGSILAGPEEF  282 (285)
Q Consensus       254 -~~~~dv~-~~s~sK~l~~--p~gg~~~~~~~~  282 (285)
                       .++.+.+ +.++||.+|.  .+.|+.....++
T Consensus       213 V~kYpNLivlqTlSKsfGLAGiRvG~~~~~~~i  245 (375)
T KOG0633|consen  213 VKKYPNLIVLQTLSKSFGLAGIRVGYGAFPLSI  245 (375)
T ss_pred             hHhCCceeehhhhhhhcCcceeEeecccccHHH
Confidence             2455654 8999997765  666776665544

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.36  E-value=9.4e-12  Score=118.54  Aligned_cols=161  Identities=17%  Similarity=0.147  Sum_probs=117.6

Q ss_pred             CccCChhHHHHHHHHHhHcCCCcEEEcCCh-HHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceee
Q psy5413          96 VYLEDPTCKELQEKAAKLAGKEAAIFVPSG-TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLM  174 (285)
Q Consensus        96 ~y~~~~~~~~l~~~la~~~g~~~~~~~~~G-s~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~  174 (285)
                      ...+.-...+.++..|+.+|.++.+|+.+| |.+|.+++.+++ .+||.|+++..+|-+...+..++         |...
T Consensus       190 Ll~~~G~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~-~~Gd~VLvdRN~HKSv~haLils---------ga~P  259 (714)
T PRK15400        190 LLDHSGPHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSA-PAGSTVLIDRNCHKSLTHLMMMS---------DVTP  259 (714)
T ss_pred             CCCCChHHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHc---------CCeE
Confidence            344445589999999999999998555555 788888888877 69999999999998887654454         7777


Q ss_pred             eeeecCC--C---CCCC-----HHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEe
Q psy5413         175 RGVTNQK--D---GTFD-----LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD  244 (285)
Q Consensus       175 ~~~~~~~--~---~~~d-----~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D  244 (285)
                      +.++...  .   +.++     .+.++++|.+++++.  ++..+++++|+..  |.+++   +++|.++|+.++  +++|
T Consensus       260 VYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak--~p~~~vit~pTYd--G~~yd---~~~I~~~~~~~~--ilvD  330 (714)
T PRK15400        260 IYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNAT--WPVHAVITNSTYD--GLLYN---TDFIKKTLDVKS--IHFD  330 (714)
T ss_pred             EEecccccccCCccCCCccccCHHHHHHHHHhCcccc--CccEEEEECCCCc--cEecC---HHHHHHHhCCCC--EEEE
Confidence            7665321  1   1234     899999998754321  2346888888877  99999   999999999887  6999


Q ss_pred             CccCC------h----hhhcccC---C--eEEEecccccCc-ceeEE
Q psy5413         245 GARLP------L----AEVCASV---D--TVMFCLSKGLGA-PVGSI  275 (285)
Q Consensus       245 ea~~~------~----~~~~~~~---d--v~~~s~sK~l~~-p~gg~  275 (285)
                      |||.+      .    ..+..++   |  +++-|.||.|++ ..+++
T Consensus       331 EAwgah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~  377 (714)
T PRK15400        331 SAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASM  377 (714)
T ss_pred             ccchhhhccCcccCCcChhhcCCCCCCceEEEEchhhcccchhHHhH
Confidence            99771      1    1122344   5  679999999988 34443

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.36  E-value=1.5e-11  Score=117.20  Aligned_cols=161  Identities=20%  Similarity=0.196  Sum_probs=118.0

Q ss_pred             CccCChhHHHHHHHHHhHcCCCcEEEcCCh-HHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceee
Q psy5413          96 VYLEDPTCKELQEKAAKLAGKEAAIFVPSG-TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLM  174 (285)
Q Consensus        96 ~y~~~~~~~~l~~~la~~~g~~~~~~~~~G-s~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~  174 (285)
                      .....-...+.++..|+.+|.++.+|+.+| |.+|.+++.+++ .+||.|+++..+|-+...+..++         |...
T Consensus       190 Ll~~~G~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~-~~Gd~VLvdRN~HKSv~~aLils---------ga~P  259 (713)
T PRK15399        190 LLDHTGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAA-PAGSTLLIDRNCHKSLAHLLMMS---------DVVP  259 (713)
T ss_pred             CCCCChHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHc---------CCee
Confidence            334445589999999999999998555555 788888888877 69999999999998887654454         7777


Q ss_pred             eeeecCC--C---CCCCH-----HHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeE-EE
Q psy5413         175 RGVTNQK--D---GTFDL-----DEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPV-HM  243 (285)
Q Consensus       175 ~~~~~~~--~---~~~d~-----~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~l-i~  243 (285)
                      +.++...  .   +.++.     +.++++|.+++++  .+++++++++|+..  |.+++   +++|.++|   |+.+ ++
T Consensus       260 VYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~--~~p~~vvit~pTYd--Gi~yd---~~~I~~~~---g~~~ilv  329 (713)
T PRK15399        260 IWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQA--QWPVHAVITNSTYD--GLLYN---TDWIKQTL---DVPSIHF  329 (713)
T ss_pred             EEecccccccCCcCCCChhhccHHHHHHHHHhCCCc--CCceEEEEECCCCC--ceeeC---HHHHHHHh---CCCEEEE
Confidence            7665321  1   12444     9999999875432  24467888898877  99999   88888888   6777 69


Q ss_pred             eCccC------Chh----hhcc--cCCeE---EEecccccCc-ceeEEe
Q psy5413         244 DGARL------PLA----EVCA--SVDTV---MFCLSKGLGA-PVGSIL  276 (285)
Q Consensus       244 Dea~~------~~~----~~~~--~~dv~---~~s~sK~l~~-p~gg~~  276 (285)
                      ||||.      +..    .+..  ++|.+   +-|.||.|++ ..++++
T Consensus       330 DEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~i  378 (713)
T PRK15399        330 DSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLI  378 (713)
T ss_pred             eccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccccccchheee
Confidence            99977      111    1112  46766   9999999998 556555

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=99.32  E-value=3.4e-11  Score=101.38  Aligned_cols=196  Identities=22%  Similarity=0.254  Sum_probs=145.5

Q ss_pred             cHHHHHHHHhccc------CCCCcc-CChhHHHHHHHHHhHcCCCcE---EEcCChHHHHHHHHHHccccCCCeEEe--c
Q psy5413          80 TMEMKNYMFNCEV------GDDVYL-EDPTCKELQEKAAKLAGKEAA---IFVPSGTMGNLIAIMTHCDRRDSEIIV--G  147 (285)
Q Consensus        80 ~~~v~~a~~~~~~------~~~~y~-~~~~~~~l~~~la~~~g~~~~---~~~~~Gs~a~~~al~~~~~~~g~~vi~--~  147 (285)
                      ...|++|.++...      +...|+ .+-..+.|++-.|+.+|.+.+   ...-||+.|+..|+...+ +|||+.+.  .
T Consensus        37 q~kVL~AF~~~rvs~~hf~~stGYGydD~GRdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~L-RpgDell~i~G  115 (416)
T COG4100          37 QKKVLEAFRHHRVSESHFTGSTGYGYDDLGRDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGIL-RPGDELLYITG  115 (416)
T ss_pred             HHHHHHHHHhcccchhccCCCCCCCccccchhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhcc-CCCCeEEEecC
Confidence            4477888775543      234666 345678899999999999986   356689999999999987 69998654  2


Q ss_pred             CCcceeeecccccccccccc-cccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHH
Q psy5413         148 DCSHIMLWEQGGASQTSVYS-QIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW  226 (285)
Q Consensus       148 ~~~h~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~  226 (285)
                      .+|- ...+..++..+..-+ ..+|....-++...++.+|.+.++..+++       +||+|.+.-..+...--.++-++
T Consensus       116 ~PYD-TLeevIG~rg~~~gSL~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~~-------~tkli~IQRS~GY~~RpS~~I~e  187 (416)
T COG4100         116 SPYD-TLEEVIGLRGEGQGSLKDFGIKYKAVPLTADGKIDIQAVKTAISD-------RTKLIGIQRSKGYAWRPSLSIAE  187 (416)
T ss_pred             Ccch-hHHHHhccCCCCcccHHHhCcceeecccccCCcccHHHHHHhcCc-------cceEEEEEeccCcCCCCcccHHH
Confidence            3331 111211111100000 24688888889888999999999999998       89999999888765444566678


Q ss_pred             HHHHHHHHHH--cCCeEEEeCccCChhh----hcccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413         227 LRELKARCQE--HNIPVHMDGARLPLAE----VCASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ  284 (285)
Q Consensus       227 l~~i~~la~~--~gi~li~Dea~~~~~~----~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~  284 (285)
                      +++++.+.|+  .++++++|.+|+.+.+    ..-++|++..|+-|+-||   -.||++++++++++
T Consensus       188 I~~~i~~vk~inpn~ivFVDNCYGEFvE~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve  254 (416)
T COG4100         188 IEEMITFVKEINPNVIVFVDNCYGEFVEEKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVE  254 (416)
T ss_pred             HHHHHHHHHhcCCCEEEEEeccchhhhhccCccccchhhhccceeeCCCCceeeccceeechHHHHH
Confidence            8999988887  4899999999994433    335889999999999888   68999999999876

>KOG1358|consensus

Probab=99.31  E-value=9.5e-12  Score=108.02  Aligned_cols=200  Identities=19%  Similarity=0.216  Sum_probs=143.6

Q ss_pred             cCCeeeeeccCCcCC--CcHHHHHHHH----hcccCC----CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHH
Q psy5413          64 VNIRTVDIRSDTISK--PTMEMKNYMF----NCEVGD----DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        64 ~~~~~~~~~~~~~~~--~~~~v~~a~~----~~~~~~----~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al  133 (285)
                      .|+++++|++.|+..  .++++.+...    +...|.    ..|++-..+..+++.|++++|.+..++.+.|-.++..++
T Consensus        92 ~G~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~E~aivYs~gF~ti~S~i  171 (467)
T KOG1358|consen   92 DGKDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGTEDAIVYSYGFSTIESAI  171 (467)
T ss_pred             cCceeecccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCCcceeeeccccchhhhcc
Confidence            578899999988876  5666666644    333331    257766778899999999999999999999999999999


Q ss_pred             HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccc--cc-cCC---ceEE
Q psy5413         134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTAD--NI-HCA---STSL  207 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~--~~-~~~---~~~~  207 (285)
                      .+++ ++||.++.+...+........++         .-.++.+.     +.|+++++..+.+..  +. ++.   .-+.
T Consensus       172 pafs-KrGDIi~~de~~nfaIq~GlqlS---------RS~i~~Fk-----hndm~~lerll~E~~~~~~K~~k~~~~Rrf  236 (467)
T KOG1358|consen  172 PAFS-KRGDIIFVDEAVNFAIQKGLQLS---------RSTISYFK-----HNDMEDLERLLPEQEDEDQKNPKKALTRRF  236 (467)
T ss_pred             hhhh-ccCcEEEEehhhhHHHHHHHhhh---------hheeEEec-----CCCHHHHHHhccCcchhhhhccccccceEE
Confidence            9987 79998777776654332211122         22333333     458888887764421  11 111   1578


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Ch-----hhhc-------ccCCeEEEecccccCcceeE
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PL-----AEVC-------ASVDTVMFCLSKGLGAPVGS  274 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~-----~~~~-------~~~dv~~~s~sK~l~~p~gg  274 (285)
                      |+++...-++ |.++|   +++|.++..+|...+|+||.+. +.     ...+       ...|+++.++.-.++. .||
T Consensus       237 iv~EGl~~N~-g~i~p---l~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas-~Gg  311 (467)
T KOG1358|consen  237 IVVEGLYANT-GDICP---LPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALAS-GGG  311 (467)
T ss_pred             EEEEeeccCC-Ccccc---cHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccc-cCc
Confidence            9999977666 99999   9999999999999999999966 11     1111       4567888888888876 789


Q ss_pred             EeecCcccc
Q psy5413         275 ILAGPEEFI  283 (285)
Q Consensus       275 ~~~~~~~~i  283 (285)
                      +++|+.-++
T Consensus       312 Fc~G~~~i~  320 (467)
T KOG1358|consen  312 FCAGKSFIA  320 (467)
T ss_pred             eeecceeeE
Confidence            999965433

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.30  E-value=1.2e-11  Score=111.16  Aligned_cols=182  Identities=10%  Similarity=0.042  Sum_probs=118.4

Q ss_pred             cCCCcHHHHHHHHhcccC------------CCCccCChhHHHHHHHHHhHcCC-C--cE-EEcCChHHHHHHHHHHcccc
Q psy5413          76 ISKPTMEMKNYMFNCEVG------------DDVYLEDPTCKELQEKAAKLAGK-E--AA-IFVPSGTMGNLIAIMTHCDR  139 (285)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~------------~~~y~~~~~~~~l~~~la~~~g~-~--~~-~~~~~Gs~a~~~al~~~~~~  139 (285)
                      |...+++|++|+.+...+            +..-.....+.++++.++++++. +  .+ ++.++|+.|+++++..++ .
T Consensus        11 P~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~-~   89 (360)
T PRK05355         11 PAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLL-G   89 (360)
T ss_pred             CCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcC-C
Confidence            355788999998876421            11111125688999999999985 2  23 666889999999999988 4


Q ss_pred             CCCeEEec-CCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHH-HhcccccccCCceEEEEEecccCC
Q psy5413         140 RDSEIIVG-DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEA-KFSTADNIHCASTSLVCVENTHNY  216 (285)
Q Consensus       140 ~g~~vi~~-~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~-~i~~~~~~~~~~~~~v~i~~~~n~  216 (285)
                      +|+++++. ...+.  ..+..++      +.+|.. ..+..++ .+..+..++++ .+++       ++++|.+++.-+.
T Consensus        90 ~g~~~l~i~~G~fg--~r~~~~a------~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~~-------~~~~V~~th~eTs  153 (360)
T PRK05355         90 GGKKADYVDTGSWS--KKAIKEA------KKYGEV-NVAASSEDDGFTYIPPLDEWQLSD-------DAAYVHYTSNETI  153 (360)
T ss_pred             CCCeEEEEECCHHH--HHHHHHH------HHhCCc-eEEecccccCCCCCCChhhccCCC-------CCCEEEEccCCCc
Confidence            77765543 22111  1122233      344544 4444332 44445555555 6655       6789999886666


Q ss_pred             CCeeeC-CHHHHHHHHHHHHHcCCeEEEeCccC-Chhhh-cccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         217 CGGTVL-PMQWLRELKARCQEHNIPVHMDGARL-PLAEV-CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       217 ~gG~~~-~~~~l~~i~~la~~~gi~li~Dea~~-~~~~~-~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      | |.+. +   +++|      +|+++++|.+++ +...+ .+..|++++|.+|++|.|-.|++..+++.++
T Consensus       154 t-Gv~~~~---i~~i------~g~l~vVDavss~g~~~idv~~~d~~~~ssqK~lgP~Glg~l~~s~~~l~  214 (360)
T PRK05355        154 D-GTEFHE---LPDT------GDVPLVADMSSDILSRPIDVSKFGLIYAGAQKNIGPAGLTIVIVREDLLG  214 (360)
T ss_pred             c-eEecCc---cccc------CCCcEEEEcCccccCccCCHHHccEEEEeccccccCCceEEEEECHHHHh
Confidence            6 8998 5   6666      899999999988 22221 2344788999999997444577777777664

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.30  E-value=1.1e-11  Score=111.50  Aligned_cols=180  Identities=13%  Similarity=0.028  Sum_probs=112.0

Q ss_pred             CCCcHHHHHHHHhcc-----cCCCCccCChhHHHHHHHHHhHcCCC---cEEE-cCChHHHHHHHHHHccccCCCeEEec
Q psy5413          77 SKPTMEMKNYMFNCE-----VGDDVYLEDPTCKELQEKAAKLAGKE---AAIF-VPSGTMGNLIAIMTHCDRRDSEIIVG  147 (285)
Q Consensus        77 ~~~~~~v~~a~~~~~-----~~~~~y~~~~~~~~l~~~la~~~g~~---~~~~-~~~Gs~a~~~al~~~~~~~g~~vi~~  147 (285)
                      ...+|++++++.+..     .+|........+.+.++.++++++.+   .++| ++|||.+++.++..+.. + +.+++.
T Consensus        12 ~~~~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~-~-~~l~i~   89 (361)
T TIGR01366        12 SKVRLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIE-K-KSLHLS   89 (361)
T ss_pred             cCCCHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhccc-c-cccEEe
Confidence            335889999987642     12332223456888999999999873   3566 47799999999998763 2 333333


Q ss_pred             CCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHH
Q psy5413         148 DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWL  227 (285)
Q Consensus       148 ~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l  227 (285)
                      ...|+....  ..+.   .....+ ++..++.++...++.     .+.+       ++++|.+++..|.+ |.+.|   +
T Consensus        90 ~G~~~~~~~--~~a~---~~~~~~-~~~~~~~~~~~~~~~-----~~~~-------~~~lV~~~h~et~t-G~~~p---i  147 (361)
T TIGR01366        90 FGEFSSKFA--KAVK---LAPWLG-EPIIVTADPGSAPEP-----QADP-------GVDVIAWAHNETST-GVAVP---V  147 (361)
T ss_pred             cCHHHHHHH--HHHH---hhhccC-CceEEecCCCCCCCC-----ccCC-------CCCEEEEcccCCcc-ceecc---c
Confidence            333322111  1110   000112 344444433322222     2333       79999999988888 99999   7


Q ss_pred             HHHHHHHHHcCCeEEEeCccC-Chhhh-cccCCeEEEecccccCcceeEE-eecCcccc
Q psy5413         228 RELKARCQEHNIPVHMDGARL-PLAEV-CASVDTVMFCLSKGLGAPVGSI-LAGPEEFI  283 (285)
Q Consensus       228 ~~i~~la~~~gi~li~Dea~~-~~~~~-~~~~dv~~~s~sK~l~~p~gg~-~~~~~~~i  283 (285)
                      ++|   +|++|+++++|.+++ +...+ .+.+|+++++.+|++++|.|.+ ++.+++++
T Consensus       148 ~~I---~~~~g~~~iVDavqs~g~~~idv~~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~  203 (361)
T TIGR01366       148 RRP---EGSDDALVVIDATSGAGGLPVDIAETDVYYFAPQKNFASDGGLWLAIMSPAAL  203 (361)
T ss_pred             ccc---cccCCCeEEEEcCccccCCCCCHHHCCEEEEEchhhcCCCCceEEEEECHHHH
Confidence            776   588999999999988 22111 1248999999999999864433 33455544

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.29  E-value=8.1e-12  Score=112.14  Aligned_cols=182  Identities=10%  Similarity=0.070  Sum_probs=113.6

Q ss_pred             CCCcHHHHHHHHhcccC-----CCCccC-------ChhHHHHHHHHHhHcCCC---cEEEcCC-hHHHHHHHHHHccc--
Q psy5413          77 SKPTMEMKNYMFNCEVG-----DDVYLE-------DPTCKELQEKAAKLAGKE---AAIFVPS-GTMGNLIAIMTHCD--  138 (285)
Q Consensus        77 ~~~~~~v~~a~~~~~~~-----~~~y~~-------~~~~~~l~~~la~~~g~~---~~~~~~~-Gs~a~~~al~~~~~--  138 (285)
                      ...+++|++++.+....     ...|..       ...+.++++.++++++.+   .++|+.| ||+|++.++..+..  
T Consensus         8 ~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~~   87 (355)
T cd00611           8 AALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGDK   87 (355)
T ss_pred             CCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCC
Confidence            44678999998876521     111111       155889999999999852   3577766 99999999999863  


Q ss_pred             cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCC-C-HHHHHHHhcccccccCCceEEEEEecccCC
Q psy5413         139 RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTF-D-LDEMEAKFSTADNIHCASTSLVCVENTHNY  216 (285)
Q Consensus       139 ~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-d-~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~  216 (285)
                      ++++.|++....|..    ..++      +..|.++..++.++++.. + .+..+..+++       ++++|.+++..|.
T Consensus        88 ~~~~~i~~g~~~~~~----~~~a------~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~lV~~~h~~t~  150 (355)
T cd00611          88 GTADYVVTGAWSAKA----AKEA------KRYGGVVVIVAAKEEGKYTKIPDVETWDLAP-------DAAYVHYCSNETI  150 (355)
T ss_pred             CeEEEEECCHHHHHH----HHHH------HhcCCCcEEEecccccCCCCCCCHhhcCCCC-------CCCEEEEeCCccc
Confidence            134444432222211    1122      345777777776433222 3 2222233444       7899999998888


Q ss_pred             CCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhhh-cccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         217 CGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAEV-CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       217 ~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~~-~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      + |...+        ++++.||+++++|.+++ +...+ .+..|+.+.+.+|++|.|-.|+++.++++++
T Consensus       151 t-G~~~~--------~i~~~~g~~~~VDa~qs~g~~~idv~~~~~~~ss~~K~lGP~G~g~l~~~~~~~~  211 (355)
T cd00611         151 H-GVEFD--------EVPDTGGVPLVADMSSNILSRPIDVSKFGVIYAGAQKNLGPAGVTVVIVRKDLLG  211 (355)
T ss_pred             c-cEEcc--------eecccCCCeEEEEccccccCCCCCHHHhCEEEeecccccCCCceEEEEECHHHHh
Confidence            8 67643        34456999999999988 22222 2334556676999987444577777776654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>KOG0258|consensus

Probab=99.29  E-value=3.2e-11  Score=104.77  Aligned_cols=171  Identities=13%  Similarity=0.121  Sum_probs=123.8

Q ss_pred             CCCccCChhHHHHHHHHHhHcCC--------CcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccc
Q psy5413          94 DDVYLEDPTCKELQEKAAKLAGK--------EAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSV  165 (285)
Q Consensus        94 ~~~y~~~~~~~~l~~~la~~~g~--------~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~  165 (285)
                      ...|..+.+..-+|+.+|+++..        +.+++++++|.|+...+.+++..+.+-|+++-+-+.-+  .+.++    
T Consensus       106 ~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLY--sAti~----  179 (475)
T KOG0258|consen  106 LGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLY--SATIS----  179 (475)
T ss_pred             ccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchh--HHHHH----
Confidence            35777778888899999998732        23478888899999999998866666677764332211  11122    


Q ss_pred             cccccceeeeeeec--CCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEE
Q psy5413         166 YSQIGRVLMRGVTN--QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHM  243 (285)
Q Consensus       166 ~~~~~g~~~~~~~~--~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~  243 (285)
                         ..|...+..-.  ..++.+|.++|++.+++..  .+.+++++++-||-||| |.+.+++.+++|..+|.++|+.|+.
T Consensus       180 ---l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~--k~i~~r~lvvINPGNPT-Gqvls~e~ie~i~~fa~~~~l~lla  253 (475)
T KOG0258|consen  180 ---LLGGTQVPYYLDEESNWSLDVAELERSVDEAR--KGINPRALVVINPGNPT-GQVLSEENIEGIICFAAEEGLVLLA  253 (475)
T ss_pred             ---HhCCcccceeeccccCCCCCHHHHHHHHHHHh--ccCCceEEEEECCCCcc-chhhcHHHHHHHHHHHHHcCeEEec
Confidence               34555554443  3467899999999998754  34478888888999999 9999999999999999999999999


Q ss_pred             eCccC-----------Chh----hhc-ccCC-e--E-EEecccccCc---ceeEEe
Q psy5413         244 DGARL-----------PLA----EVC-ASVD-T--V-MFCLSKGLGA---PVGSIL  276 (285)
Q Consensus       244 Dea~~-----------~~~----~~~-~~~d-v--~-~~s~sK~l~~---p~gg~~  276 (285)
                      ||+|-           ++.    .+. .+.| +  + ..+.||++.+   .+||++
T Consensus       254 DEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYm  309 (475)
T KOG0258|consen  254 DEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYM  309 (475)
T ss_pred             hHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCee
Confidence            99954           111    111 2333 2  2 7888998877   888886

>KOG0629|consensus

Probab=99.28  E-value=2.3e-11  Score=106.72  Aligned_cols=156  Identities=21%  Similarity=0.291  Sum_probs=114.6

Q ss_pred             HHHHHHHhHcCCC---cEEEcCChHHHHHHHHHHccccC--C----------C-eEEecCCcceeeeccccccccccccc
Q psy5413         105 ELQEKAAKLAGKE---AAIFVPSGTMGNLIAIMTHCDRR--D----------S-EIIVGDCSHIMLWEQGGASQTSVYSQ  168 (285)
Q Consensus       105 ~l~~~la~~~g~~---~~~~~~~Gs~a~~~al~~~~~~~--g----------~-~vi~~~~~h~~~~~~~~~~~~~~~~~  168 (285)
                      ++-.++.+..|-+   ..+|+++|+-+|.-++.++..+.  +          + .++.++.+|++...+++.-      .
T Consensus       145 ~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~l------g  218 (510)
T KOG0629|consen  145 EVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFL------G  218 (510)
T ss_pred             HHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHh------c
Confidence            3334445555544   35999999999999998875321  1          1 1345789999988766555      3


Q ss_pred             ccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413         169 IGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL  248 (285)
Q Consensus       169 ~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~  248 (285)
                      .....++.++.++.+.+++++||+.|.+. +..+..+.+|-.+..+-.- |...|   |..|+++|++|++|+|+|+|+.
T Consensus       219 ~gtd~c~~v~t~e~Gkm~~~dLe~kile~-k~kg~~Pf~vnaTaGTTV~-GAFDd---L~~iadiC~k~~lWmHvDAAwG  293 (510)
T KOG0629|consen  219 LGTDHCIKVKTDERGKMIPDDLEKKILEA-KAKGGVPFFVNATAGTTVL-GAFDD---LNGIADICEKHKLWMHVDAAWG  293 (510)
T ss_pred             cCCceeEEecccccCccchHHHHHHHHHH-HhcCCCCeEEEecCCceee-eccCc---HHHHHHHHHhcCEEEEeecccc
Confidence            44578889999899999999999999773 3333345666666544444 77777   9999999999999999999988


Q ss_pred             C-h---------hhhcccCCeEEEecccccCcc
Q psy5413         249 P-L---------AEVCASVDTVMFCLSKGLGAP  271 (285)
Q Consensus       249 ~-~---------~~~~~~~dv~~~s~sK~l~~p  271 (285)
                      + +         ..-.+.+|.++.+.||++|.|
T Consensus       294 GglLmS~k~R~kl~Giera~SvtwnpHK~~gap  326 (510)
T KOG0629|consen  294 GGLLMSRKHRHKLTGIERANSVTWNPHKLMGAP  326 (510)
T ss_pred             cccccChhhHhhccCccccCceeecHHHhhcCc
Confidence            3 1         112367899999999999984

>KOG2467|consensus

Probab=99.26  E-value=8.7e-11  Score=101.32  Aligned_cols=192  Identities=16%  Similarity=0.156  Sum_probs=129.3

Q ss_pred             eeccCCcCCCcHHHHHHHHhcccC--------CCCccCChhHHHHHHHH----HhHcCCCcE-----EEcCChHHHHHHH
Q psy5413          70 DIRSDTISKPTMEMKNYMFNCEVG--------DDVYLEDPTCKELQEKA----AKLAGKEAA-----IFVPSGTMGNLIA  132 (285)
Q Consensus        70 ~~~~~~~~~~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~~~l----a~~~g~~~~-----~~~~~Gs~a~~~a  132 (285)
                      ...++|++  +..|++|+-..+.+        ...|+.++.++++|...    .+.++.+..     +..-|||-||+++
T Consensus        45 LIaSENFt--s~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfav  122 (477)
T KOG2467|consen   45 LIASENFT--SRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAV  122 (477)
T ss_pred             Eeecccch--HHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHH
Confidence            34567665  78899998766653        34566777666665433    445677652     7778999999999


Q ss_pred             HHHccccCCCeEEe---cCCc---ceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceE
Q psy5413         133 IMTHCDRRDSEIIV---GDCS---HIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       133 l~~~~~~~g~~vi~---~~~~---h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                      ..+++ +|++++.-   ++..   |++....-.++..+.   .+.-....+.. ..+.+|.+.||+.-...      +++
T Consensus       123 Ytall-~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~Si---yFeSmPYkv~~-~TG~IDYD~Le~~A~~f------rPk  191 (477)
T KOG2467|consen  123 YTALL-KPHERIMGLDLPSGGHLSHGYQTPTKKISATSI---YFESMPYKVDP-STGYIDYDKLEKTATLF------RPK  191 (477)
T ss_pred             Hhhhc-CCCCeeeeccCCCCCccccccccCCceeeeeee---ecccCceeeCC-CCCceehHHHHHHHHhc------CCc
Confidence            99988 68887654   3333   443333222321111   11222222222 46779999999876653      667


Q ss_pred             EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecC
Q psy5413         207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGP  279 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~  279 (285)
                      +|+. ..+..  -..++   +.+++++|.+.|.++++|-+|. ++.      .-.+++|+|+.+.||.|-||+||.+.-+
T Consensus       192 ~iia-G~SaY--~R~~D---YaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~DiVTTTTHKsLRGPRg~mIFyR  265 (477)
T KOG2467|consen  192 LIIA-GTSAY--SRLID---YARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYCDIVTTTTHKSLRGPRGAMIFYR  265 (477)
T ss_pred             EEEe-ccccc--hhhcc---HHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccccceeeccccccccCCcceeEEEe
Confidence            7665 33333  35666   9999999999999999999998 222      2247999999999999999999999865


Q ss_pred             c
Q psy5413         280 E  280 (285)
Q Consensus       280 ~  280 (285)
                      +
T Consensus       266 k  266 (477)
T KOG2467|consen  266 K  266 (477)
T ss_pred             c
Confidence            4

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.25  E-value=6.6e-11  Score=108.82  Aligned_cols=159  Identities=18%  Similarity=0.168  Sum_probs=121.8

Q ss_pred             ChhHHHHHHHHHhHcCCCcE-EEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeee
Q psy5413         100 DPTCKELQEKAAKLAGKEAA-IFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT  178 (285)
Q Consensus       100 ~~~~~~l~~~la~~~g~~~~-~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~  178 (285)
                      .-.+.+.++..|+.+|.++. +++||.|.||.+++.+++ .+||.|+++...|-+......++         |...+.+.
T Consensus        69 ~G~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~-~~GD~VLvdRN~HKSi~~glila---------Ga~Pvyl~  138 (557)
T COG1982          69 EGPIKEAQELAARVFGADHTYFVVNGTSTANKAVINAVL-TPGDKVLVDRNCHKSIHHGLILA---------GATPVYLE  138 (557)
T ss_pred             CccHHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhc-CCCCEEEecCCccHHHHHHHHHc---------CCceEEec
Confidence            33489999999999999987 556666788888888877 69999999999998776543344         66666554


Q ss_pred             cC--C----CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----
Q psy5413         179 NQ--K----DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL----  248 (285)
Q Consensus       179 ~~--~----~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~----  248 (285)
                      ..  +    -+.++.+.+++.+.++...    -+++++.+|+..  |.+++   +++|.+.++++++|+.+|+++.    
T Consensus       139 p~~np~~gi~ggI~~~~~~~~l~~~~~~----~k~~vitnpTYd--Gv~~n---~~~i~~~~~~~~a~v~~deah~~~~~  209 (557)
T COG1982         139 PSRNPLYGIIGGIPLETFKEALLAHPDA----EKLAVITNPTYD--GVCYN---LRKIVELLHHYGAWVLYDEAHPAHFD  209 (557)
T ss_pred             CCCCccccccCCCCHHHHHHHHHhChhh----heeEEEecCccc--eEeec---HHHHHHHHhhcCceEEhhhcCccccc
Confidence            32  2    1358999999988774221    178889898887  99999   9999999999999999999976    


Q ss_pred             --Ch---hhhcccCCeEEEecccccCc-ceeEEee
Q psy5413         249 --PL---AEVCASVDTVMFCLSKGLGA-PVGSILA  277 (285)
Q Consensus       249 --~~---~~~~~~~dv~~~s~sK~l~~-p~gg~~~  277 (285)
                        ++   ......+|+++.|.||.+++ ..+..+-
T Consensus       210 ~~~~l~~~~~~~~~~~~tqS~HK~l~alSQaS~iH  244 (557)
T COG1982         210 FSPMLPESALNGGADFVTQSTHKLLAALSQASMIH  244 (557)
T ss_pred             ccccCcchhhhcCceEEEechhhhhhhhhhhHHHh
Confidence              11   11225678889999999988 4555543

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.17  E-value=5.1e-10  Score=110.96  Aligned_cols=156  Identities=16%  Similarity=0.100  Sum_probs=115.7

Q ss_pred             hHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCC--CeEEecCCcceeeecccccccccccccccceeeeee
Q psy5413         102 TCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRD--SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus       102 ~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g--~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~  177 (285)
                      ...++++.+++++|.+.  +-+++++|.+.++++.+...+++  ++|++++..|..+.....     .+.+..|.+++.+
T Consensus       122 al~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~-----t~a~~~G~ev~~~  196 (954)
T PRK05367        122 ALLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLR-----TRAEPLGIEVVVG  196 (954)
T ss_pred             HHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHH-----HHHHhCCCEEEEe
Confidence            36788999999999885  48999999999988876543343  789998888865432110     1114568898888


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC---Ch-hhh
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL---PL-AEV  253 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~---~~-~~~  253 (285)
                      +...    |++      .+       ++.++++..|+..  |.+.|   +++|+++||++|+++++|..+.   .+ ..-
T Consensus       197 ~~~~----d~~------~~-------~~~~vlvq~p~~~--G~i~d---~~~i~~~ah~~Gal~~vda~~~Al~~l~~pg  254 (954)
T PRK05367        197 DAAK----ALD------HD-------DVFGVLLQYPGTS--GEVRD---YTALIAAAHARGALVAVAADLLALTLLTPPG  254 (954)
T ss_pred             cCcc----CCC------cc-------cEEEEEEecCCCC--eeecc---HHHHHHHHHHcCCEEEEEehhhhccCCCChh
Confidence            8632    111      22       6778888787655  89999   9999999999999999999653   22 222


Q ss_pred             cccCCeEEEecccc-----cCcceeEEeecCccccc
Q psy5413         254 CASVDTVMFCLSKG-----LGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       254 ~~~~dv~~~s~sK~-----l~~p~gg~~~~~~~~i~  284 (285)
                      ..++|+++.+.+||     +|||..|++..++++++
T Consensus       255 e~GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r  290 (954)
T PRK05367        255 EMGADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKR  290 (954)
T ss_pred             hcCCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHh
Confidence            35899999999999     77898899988887654

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.11  E-value=3e-10  Score=101.65  Aligned_cols=157  Identities=10%  Similarity=0.014  Sum_probs=103.5

Q ss_pred             hhHHHHHHHHHhHcCCC---cEEEc-CChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeee
Q psy5413         101 PTCKELQEKAAKLAGKE---AAIFV-PSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRG  176 (285)
Q Consensus       101 ~~~~~l~~~la~~~g~~---~~~~~-~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~  176 (285)
                      ..+.++++.++++++.+   .++++ .|||.|+++++..+. .+|+++++.....+ ...+..++      +..|. +..
T Consensus        37 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~-~~~~~~l~i~~G~f-g~r~~~~a------~~~g~-~~~  107 (349)
T TIGR01364        37 AVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLL-AEGKVADYIVTGAW-SKKAAKEA------KKYGV-VNV  107 (349)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcC-CCCCeEEEEECCHH-HHHHHHHH------HHhCC-cEE
Confidence            45778899999999852   25555 569999999999987 47887654322211 11122333      44566 555


Q ss_pred             eecC----CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh
Q psy5413         177 VTNQ----KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA  251 (285)
Q Consensus       177 ~~~~----~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~  251 (285)
                      +..+    +....++++++  +++       ++++|.+.+.-+.| |...+        ++++.+|+++++|.+++ +..
T Consensus       108 ~~~~~~~~~~~~~~~~~~~--~~~-------~~~~v~~th~ETst-Gv~~~--------~l~~~~~~l~iVDavss~g~~  169 (349)
T TIGR01364       108 VASGKEGNYTKIPDPSTWE--ISE-------DAAYVHYCANETIH-GVEFR--------ELPDVKNAPLVADMSSNILSR  169 (349)
T ss_pred             EeccccCCCCCCCCHHhcC--CCC-------CCCEEEEcCCCCcc-cEecc--------eecccCCCeEEEEccccccCc
Confidence            5432    22245666555  233       67899998877777 78765        56667899999999988 222


Q ss_pred             hh-cccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         252 EV-CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       252 ~~-~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      .+ .+..|+++++.+|+||.|-.|+++.+++.++
T Consensus       170 ~id~~~~d~~~~ssqK~lgP~Glg~l~~s~~~~~  203 (349)
T TIGR01364       170 PIDVSKFGLIYAGAQKNIGPAGLTVVIVRKDLLG  203 (349)
T ss_pred             cCCHHHccEEEEecccccCCCceEEEEECHHHHh
Confidence            21 2345788999999997554577777776654

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.09  E-value=4.4e-09  Score=94.97  Aligned_cols=156  Identities=20%  Similarity=0.238  Sum_probs=104.3

Q ss_pred             hHHHHHHHHHhHcCCCcE--EEcCChHHHHHHHHHHccccCC--CeEEecCCcceeeecccccccccccccccceeeeee
Q psy5413         102 TCKELQEKAAKLAGKEAA--IFVPSGTMGNLIAIMTHCDRRD--SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus       102 ~~~~l~~~la~~~g~~~~--~~~~~Gs~a~~~al~~~~~~~g--~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~  177 (285)
                      ...+++..+++++|.+.+  -+.++++.+-++++.+....+.  ++++++...|..+..     +-..|....|.+++.+
T Consensus       111 ~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~-----v~~t~a~~~g~~iv~~  185 (429)
T PF02347_consen  111 ALFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRA-----VLRTYAAPLGIEIVEV  185 (429)
T ss_dssp             HHHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHH-----HHHHHCCHCCEEEEEE
T ss_pred             HHHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHH-----HHHHhhhhCCeEEEEe
Confidence            377999999999999964  6777777777766665433233  478899888865533     1113335569999999


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----Chh-h
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL----PLA-E  252 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~----~~~-~  252 (285)
                      +..+++..|        ++       ++++|++++|+..  |.+-+   +++|++++|++|.++++ .+-.    .+. .
T Consensus       186 ~~~~~~~~d--------~~-------~~a~v~vq~Pn~~--G~~ed---~~~i~~~~h~~gal~~~-~ad~~aL~~l~~P  244 (429)
T PF02347_consen  186 PLDEDGTTD--------DD-------DTAAVMVQNPNTF--GVFED---IKEIADIAHAAGALVIV-GADPNALGGLKSP  244 (429)
T ss_dssp             -BBTTCSB---------ST-------TEEEEEEESS-TT--SB--T---HHHHHHHHHHTT-EEEE-CGGCCGCCTC--G
T ss_pred             cccccCCcc--------cc-------CeEEEEeecCCCC--ceEee---HHHHHHHHHHcCCEEEE-ecCHHHHhCcCCh
Confidence            986666555        44       8999999999987  89999   99999999999999998 6633    111 1


Q ss_pred             hcccCCeEEEecccccCc------ceeEEeecCccccc
Q psy5413         253 VCASVDTVMFCLSKGLGA------PVGSILAGPEEFIQ  284 (285)
Q Consensus       253 ~~~~~dv~~~s~sK~l~~------p~gg~~~~~~~~i~  284 (285)
                      -..++|++ .+.+|.||.      |..|+++.++++++
T Consensus       245 ge~GADI~-vg~~Q~fg~p~~~GGP~~G~~a~~~~l~r  281 (429)
T PF02347_consen  245 GEYGADIV-VGEHQTFGIPMGFGGPGAGFFAVREDLVR  281 (429)
T ss_dssp             GGGT-SEE-EECCTTTT---CCC-S--EEEEE-GGGGG
T ss_pred             hhcCccEE-eeCCCCCcccCCCCCCCeeeEEEhhhhhh
Confidence            23589999 444886544      88899999888765

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.07  E-value=2.1e-09  Score=106.46  Aligned_cols=179  Identities=16%  Similarity=0.080  Sum_probs=122.6

Q ss_pred             CcHHHHHHHHhcccC---CCCccC------ChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCC--CeEE
Q psy5413          79 PTMEMKNYMFNCEVG---DDVYLE------DPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRD--SEII  145 (285)
Q Consensus        79 ~~~~v~~a~~~~~~~---~~~y~~------~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g--~~vi  145 (285)
                      .++.+++++.+...-   ...|..      -+...++++.+++++|.+.  +-++.++|.+.++++.+....+|  ++|+
T Consensus       117 ~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~Vl  196 (993)
T PLN02414        117 VPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFL  196 (993)
T ss_pred             CCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhcccCCCCEEE
Confidence            345665777654431   223321      1236788999999999874  68999999999988876543444  5688


Q ss_pred             ecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHH
Q psy5413         146 VGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQ  225 (285)
Q Consensus       146 ~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~  225 (285)
                      +++..|..+....     ..+.+..|++++.++... .  +      ...+       .+..+++..|++.  |.+.|  
T Consensus       197 Vs~~~hP~~~~v~-----~t~a~~~GieV~~v~~~~-~--~------~~~~-------~v~~vlvq~P~~~--G~v~d--  251 (993)
T PLN02414        197 IASNCHPQTIDVC-----QTRADGLGLEVVVADEKD-F--D------YSSG-------DVCGVLVQYPATD--GEVLD--  251 (993)
T ss_pred             EcCccCHhHHHHH-----HHhhhhcCCEEEEecchh-h--c------cccC-------ceEEEEEecCCCC--eEEcC--
Confidence            8888876543211     011245688888887621 0  1      1122       4667777777665  99999  


Q ss_pred             HHHHHHHHHHHcCCeEEEeCccC----Chh-hhcccCCeEEEeccccc-----CcceeEEeecCccccc
Q psy5413         226 WLRELKARCQEHNIPVHMDGARL----PLA-EVCASVDTVMFCLSKGL-----GAPVGSILAGPEEFIQ  284 (285)
Q Consensus       226 ~l~~i~~la~~~gi~li~Dea~~----~~~-~~~~~~dv~~~s~sK~l-----~~p~gg~~~~~~~~i~  284 (285)
                       +++|+++||++|+++++ .++.    .+. .-..++|+++.+.+||+     |||..|++..++++.+
T Consensus       252 -v~~I~~~ah~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r  318 (993)
T PLN02414        252 -YAEFVKNAHANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKR  318 (993)
T ss_pred             -HHHHHHHHHHcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccccCCCCCCCCeeEEEECHHHHh
Confidence             99999999999999999 5544    232 22358999999999997     6677799988877643

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.02  E-value=1.2e-09  Score=98.16  Aligned_cols=178  Identities=15%  Similarity=0.087  Sum_probs=114.7

Q ss_pred             CcHH-HHHHHHhcccCCC--CccCChhHHHHHHHHHhHcCCC--c--EEEcCChHHHHHHHHHHccccCCCeEEecCCcc
Q psy5413          79 PTME-MKNYMFNCEVGDD--VYLEDPTCKELQEKAAKLAGKE--A--AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSH  151 (285)
Q Consensus        79 ~~~~-v~~a~~~~~~~~~--~y~~~~~~~~l~~~la~~~g~~--~--~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h  151 (285)
                      .+|. +.+++.+...+..  .-.....+.++++.+.++++.+  .  .++..|||.++++++..++.++|+.+++.. .+
T Consensus        14 ~~~~~~~~~~~~~~~~~~HRs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~F   92 (374)
T TIGR01365        14 KRPGWSIEELKNAPLGRSHRSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SF   92 (374)
T ss_pred             CCchhhHHHHhhhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HH
Confidence            4565 7777776655422  2223355778899999999853  2  367899999999999998844777777643 21


Q ss_pred             eeeeccc-ccccccccccccce-eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHH
Q psy5413         152 IMLWEQG-GASQTSVYSQIGRV-LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRE  229 (285)
Q Consensus       152 ~~~~~~~-~~~~~~~~~~~~g~-~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~  229 (285)
                        ...+. .++      +..|. .+..+..++...+|+++++.  ++       .  +.++.+-|++  |...|   +++
T Consensus        93 --G~r~~~eia------~~~g~~~v~~l~~~~g~~~~~~~ve~--~~-------~--v~~vhnETST--Gv~np---v~~  148 (374)
T TIGR01365        93 --GKGWVTDVT------KQLKLPDVRVLEAEYGKLPDLKKVDF--KN-------D--VVFTWNGTTS--GVRVP---NGD  148 (374)
T ss_pred             --HHHHHHHHH------HhcCCCCcEEEcCCCCCCCCHHHcCC--CC-------C--EEEecCCCch--heecc---ccc
Confidence              12222 233      33466 35566665666789999872  22       2  3344344443  99999   766


Q ss_pred             HHHHHHHcCCeEEEeCccC--ChhhhcccCCeEEEecccccCccee-EEeecCcccc
Q psy5413         230 LKARCQEHNIPVHMDGARL--PLAEVCASVDTVMFCLSKGLGAPVG-SILAGPEEFI  283 (285)
Q Consensus       230 i~~la~~~gi~li~Dea~~--~~~~~~~~~dv~~~s~sK~l~~p~g-g~~~~~~~~i  283 (285)
                      ++..+  +++++|+|.+-+  +...-.+++|+++.+..|+|++|-| ++++-+++.+
T Consensus       149 i~~~~--~~~lliVDavSs~g~~~l~~d~iDv~~tgsQK~L~~ppGls~v~vs~~Al  203 (374)
T TIGR01365       149 FIPAD--REGLTICDATSAAFAQDLDYHKLDVVTFSWQKVLGGEGAHGMLILSPRAV  203 (374)
T ss_pred             ccccc--CCCcEEEEccchhcCCCCChhHCcEEEEechhccCCCCceEEEEECHHHH
Confidence            65322  589999999966  2222223599999999999999544 4666665544

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=98.95  E-value=1.9e-08  Score=88.98  Aligned_cols=192  Identities=17%  Similarity=0.141  Sum_probs=131.3

Q ss_pred             cCCcCCCcHHHHH-HHHhcccCCCCccC---------ChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccC
Q psy5413          73 SDTISKPTMEMKN-YMFNCEVGDDVYLE---------DPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRR  140 (285)
Q Consensus        73 ~~~~~~~~~~v~~-a~~~~~~~~~~y~~---------~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~  140 (285)
                      .+.+.+-.|.+.. .+.+-..=...|.+         -+...+++..+++++|.+-  +-+.+.+|.+-++++.+....+
T Consensus        82 ~GyY~~~~P~vI~rnile~pewyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~k  161 (450)
T COG0403          82 AGYYDTYTPPVILRNILENPEWYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVTK  161 (450)
T ss_pred             CcccCCcCcHHHHHHhhcCccccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhhc
Confidence            4555665665555 55432221223321         1236688899999999874  4788999999888888765433


Q ss_pred             --CCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCC
Q psy5413         141 --DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCG  218 (285)
Q Consensus       141 --g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~g  218 (285)
                        .++++++...|..+..     +-..|....|.+++..+.+     |+++++++ ...      .+.+|+++.|+..+ 
T Consensus       162 ~k~~~~~V~~~vhpqt~~-----Vl~Tra~~~g~~i~~~~~~-----d~~~l~~~-~~~------~~~gv~vQyP~~~G-  223 (450)
T COG0403         162 KKRNKFLVPKDVHPQTLD-----VLRTRAEGLGIEIEVVDAD-----DLDDLESA-DDG------DVFGVLVQYPNTFG-  223 (450)
T ss_pred             CcCceEEecCCCCHHHHH-----HHHhhcccCceEEEEeccc-----hhhhhhhc-ccc------CeEEEEEecCCCCC-
Confidence              3568888888865532     2224446678888887764     78888888 431      78999999999652 


Q ss_pred             eeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----hhcccCCeEEEeccc-----ccCcceeEEeecCcccccC
Q psy5413         219 GTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----EVCASVDTVMFCLSK-----GLGAPVGSILAGPEEFIQK  285 (285)
Q Consensus       219 G~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----~~~~~~dv~~~s~sK-----~l~~p~gg~~~~~~~~i~~  285 (285)
                      ....+   +++|.+.+|++|.++++=.--..+.    .-..++|+++.+.+-     ++|||..|+.+.+++++++
T Consensus       224 ~~~~d---~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~  296 (450)
T COG0403         224 IVEED---LRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQ  296 (450)
T ss_pred             ccchh---HHHHHHHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCCcceeeeeEhHhHhhc
Confidence            36666   9999999999999888643322111    123589998665554     7888999999999888653

>KOG2040|consensus

Probab=98.94  E-value=4.6e-09  Score=96.71  Aligned_cols=156  Identities=17%  Similarity=0.208  Sum_probs=120.0

Q ss_pred             ChhHHHHHHHHHhHcCCCcE-EEcCChHHHHHH---HHHHccccCCC----eEEecCCcceeeecccccccccccccccc
Q psy5413         100 DPTCKELQEKAAKLAGKEAA-IFVPSGTMGNLI---AIMTHCDRRDS----EIIVGDCSHIMLWEQGGASQTSVYSQIGR  171 (285)
Q Consensus       100 ~~~~~~l~~~la~~~g~~~~-~~~~~Gs~a~~~---al~~~~~~~g~----~vi~~~~~h~~~~~~~~~~~~~~~~~~~g  171 (285)
                      .+.+.+|++.+++..|.+.. +..|+|.++-.+   ++++....+|+    ..+++-..|+......+++         |
T Consensus       581 ~~lf~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~Ma---------g  651 (1001)
T KOG2040|consen  581 QQLFTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMA---------G  651 (1001)
T ss_pred             HHHHHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhc---------C
Confidence            35688999999999999986 777777766544   45554444453    2566788888776656666         9


Q ss_pred             eeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC---
Q psy5413         172 VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL---  248 (285)
Q Consensus       172 ~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~---  248 (285)
                      .+++.+....++.+|+++|+++.++    |.++.++++++.|+-.  |..-+  .+++++++.++||.-|..|++--   
T Consensus       652 mkvvpV~~~~~G~id~~dLk~kaek----h~~~Laa~MvTYPST~--GvfE~--~i~d~cd~iHehGGQVYlDGANMNAq  723 (1001)
T KOG2040|consen  652 MKVVPVGCDANGNIDMVDLKAKAEK----HKDNLAALMVTYPSTH--GVFEE--GIDDICDIIHEHGGQVYLDGANMNAQ  723 (1001)
T ss_pred             CEEEEeeccCCCCccHHHHHHHHHH----hhhhhheeEEeccccc--ccccc--cHHHHHHHHHhcCCEEEecCCCccce
Confidence            9999999988999999999999988    5668999999998754  55433  49999999999999999999944   


Q ss_pred             -Chhhh-cccCCeEEEecccccCcce
Q psy5413         249 -PLAEV-CASVDTVMFCLSKGLGAPV  272 (285)
Q Consensus       249 -~~~~~-~~~~dv~~~s~sK~l~~p~  272 (285)
                       ++... .-+.||.-..+||.|+-|.
T Consensus       724 VGlc~pGd~GaDV~HLNLHKTFcIPH  749 (1001)
T KOG2040|consen  724 VGLCRPGDIGADVCHLNLHKTFCIPH  749 (1001)
T ss_pred             ecccCCccccccceeecccceeeecC
Confidence             33222 2378999899999876543

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=98.92  E-value=1.8e-08  Score=86.18  Aligned_cols=148  Identities=17%  Similarity=0.194  Sum_probs=105.1

Q ss_pred             HHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHcccc-CCCeEEecCCcceeeecccccccccccccccceeeeeeec
Q psy5413         103 CKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDR-RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN  179 (285)
Q Consensus       103 ~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~-~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~  179 (285)
                      -..+-.+++-++|...  ++.+++.|--+.-++.+++.. +|+.||+++...+.+....+-.         -+.+.....
T Consensus        78 p~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g---------~~~~~~~~~  148 (407)
T COG3844          78 PERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEG---------LADLLGIGY  148 (407)
T ss_pred             hhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcc---------hhhhhcccc
Confidence            4567778888888654  466665555555566555532 3778888765544433211111         112222223


Q ss_pred             CCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcc
Q psy5413         180 QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P---LAEVCA  255 (285)
Q Consensus       180 ~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~  255 (285)
                      +-...+.++++++++++       ++++|++++++..| |+..+   +.+|-+++|+||++++-|=+|+ +   ..--..
T Consensus       149 ~~~~~~~P~~~~~~~~d-------d~AvV~L~~V~y~T-Gql~d---m~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~  217 (407)
T COG3844         149 DLEGVIAPRALEEAITD-------DVAVVLLSHVNYKT-GQLLD---MRAITALAHQHGALVGWDLAHSAGAVPVDLHAA  217 (407)
T ss_pred             cceeeeChHHHHHhhcc-------ceEEEEeccccccc-cceee---HHHHHHHHHhcCceEEeehhcccCCcceeeccc
Confidence            33445678899999988       89999999999999 99999   9999999999999999999998 3   222347


Q ss_pred             cCCeEEEecccccCc
Q psy5413         256 SVDTVMFCLSKGLGA  270 (285)
Q Consensus       256 ~~dv~~~s~sK~l~~  270 (285)
                      ++|+-+.|.+|.|.+
T Consensus       218 gaDfaigcsyKYLNg  232 (407)
T COG3844         218 GADFAIGCSYKYLNG  232 (407)
T ss_pred             CCCeeeeeeceeccC
Confidence            899999999999977

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=98.73  E-value=1.1e-07  Score=93.49  Aligned_cols=156  Identities=15%  Similarity=0.150  Sum_probs=109.9

Q ss_pred             hHHHHHHHHHhHcCCCcE--EEcCChHHHHHHHHHHccccC--CCeEEecCCcceeeecccccccccccccccceeeeee
Q psy5413         102 TCKELQEKAAKLAGKEAA--IFVPSGTMGNLIAIMTHCDRR--DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus       102 ~~~~l~~~la~~~g~~~~--~~~~~Gs~a~~~al~~~~~~~--g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~  177 (285)
                      ...++++.+++++|.+..  -+.+.+|.+.++++++....+  +++|++++..|..+....     ..+....|.+++.+
T Consensus       110 ~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~-----~t~a~~~g~~v~~~  184 (939)
T TIGR00461       110 ALLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVL-----HTRAKPFGIEVIVV  184 (939)
T ss_pred             HHHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHH-----HHHHHhcCcEEEEE
Confidence            367899999999999854  788888888887776643222  367899998886543211     11224557777766


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh----h
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE----V  253 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~----~  253 (285)
                              |+++|++.+         +++++++.+|+..  |.+.+   +++|++++|++|.+++++.-...+..    -
T Consensus       185 --------~~~~l~~~~---------~~~~v~~q~Pn~~--G~ied---~~~i~~~~h~~gal~~~~ad~~al~ll~~Pg  242 (939)
T TIGR00461       185 --------DCSDIKKAV---------DVFGCLLQYPATD--GSILD---YKQLIDALHSHKSLVSVAADLMALTLLTPPG  242 (939)
T ss_pred             --------cHHHHhhcC---------CEEEEEEECCCCC--eEEec---HHHHHHHHHHcCCEEEEEechHHhCCcCCHH
Confidence                    344555554         3689999998876  89988   99999999999999999655442222    2


Q ss_pred             cccCCeEEEeccc-----ccCcceeEEeecCccccc
Q psy5413         254 CASVDTVMFCLSK-----GLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       254 ~~~~dv~~~s~sK-----~l~~p~gg~~~~~~~~i~  284 (285)
                      ..++|+++.+..+     ++|||.+|+++.++++++
T Consensus       243 e~GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r  278 (939)
T TIGR00461       243 HYGADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNR  278 (939)
T ss_pred             HcCCcEEeeCCCccCCCCCCCCCceeeeeecHhhHh
Confidence            2489998554333     455699999998887764

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=98.66  E-value=6.9e-07  Score=78.29  Aligned_cols=169  Identities=20%  Similarity=0.167  Sum_probs=115.5

Q ss_pred             CCCccCChhHHHHHHHHHhH-cCCCc---------EEEcCChHHHHHHHHHHcccc-CCCeEEecCCcceeeeccccccc
Q psy5413          94 DDVYLEDPTCKELQEKAAKL-AGKEA---------AIFVPSGTMGNLIAIMTHCDR-RDSEIIVGDCSHIMLWEQGGASQ  162 (285)
Q Consensus        94 ~~~y~~~~~~~~l~~~la~~-~g~~~---------~~~~~~Gs~a~~~al~~~~~~-~g~~vi~~~~~h~~~~~~~~~~~  162 (285)
                      ...|-+-.+..++.+.++++ +|.+.         .+.+.|||.|+-.+...+... +...|.++++++.....   +- 
T Consensus        62 ~k~Yl~i~G~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~---If-  137 (396)
T COG1448          62 TKNYLPIEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKA---IF-  137 (396)
T ss_pred             ccccCCcCCcHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHH---HH-
Confidence            34565666677888888887 56441         278999999999998876532 33458899887533211   11 


Q ss_pred             ccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEEEEEec-ccCCCCeeeCCHHHHHHHHHHHHHcCC
Q psy5413         163 TSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSLVCVEN-THNYCGGTVLPMQWLRELKARCQEHNI  239 (285)
Q Consensus       163 ~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~-~~n~~gG~~~~~~~l~~i~~la~~~gi  239 (285)
                           ...|.++...|.-  +...+|++.+.+.+++..    .+. +|++.. .+||| |.-.+.+.-++|.++.++.|.
T Consensus       138 -----~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~----~~~-vvLLH~CcHNPT-G~D~t~~qW~~l~~~~~~r~l  206 (396)
T COG1448         138 -----EAAGLEVETYPYYDAETKGLDFDGMLADLKTAP----EGS-VVLLHGCCHNPT-GIDPTEEQWQELADLIKERGL  206 (396)
T ss_pred             -----HhcCCceeeeeccccccccccHHHHHHHHHhCC----CCC-EEEEecCCCCCC-CCCCCHHHHHHHHHHHHHcCC
Confidence                 2347777766642  233489998888887631    133 444444 99999 899999999999999999999


Q ss_pred             eEEEeCccCChh-----------hhc-ccCC-eEEEecccccCc---ceeEEee
Q psy5413         240 PVHMDGARLPLA-----------EVC-ASVD-TVMFCLSKGLGA---PVGSILA  277 (285)
Q Consensus       240 ~li~Dea~~~~~-----------~~~-~~~d-v~~~s~sK~l~~---p~gg~~~  277 (285)
                      +.++|-||-++.           .+. .+.. +++.|+||.|+.   ..|++.+
T Consensus       207 ip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~v  260 (396)
T COG1448         207 IPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALSV  260 (396)
T ss_pred             eeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeEE
Confidence            999999966221           111 2222 449999999887   6666544

>PLN02452 phosphoserine transaminase

Probab=98.65  E-value=1.7e-07  Score=84.20  Aligned_cols=182  Identities=8%  Similarity=-0.015  Sum_probs=107.8

Q ss_pred             cCCCcHHHHHHHHhccc------------CCCCccCChhHHHHHHHHHhHcCCCc---E-EEcCChHHHHHHHHHHcccc
Q psy5413          76 ISKPTMEMKNYMFNCEV------------GDDVYLEDPTCKELQEKAAKLAGKEA---A-IFVPSGTMGNLIAIMTHCDR  139 (285)
Q Consensus        76 ~~~~~~~v~~a~~~~~~------------~~~~y~~~~~~~~l~~~la~~~g~~~---~-~~~~~Gs~a~~~al~~~~~~  139 (285)
                      |...+++|++++++...            .|..-.....+.++++.|.++++.+.   + ++..|||.++++++..++ .
T Consensus        15 P~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~-~   93 (365)
T PLN02452         15 PATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLC-K   93 (365)
T ss_pred             CCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcC-C
Confidence            34568899999887642            12211123558889999999998642   4 566889999999999988 4


Q ss_pred             CCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC---CCCCHHHHHHHhcccccccCCceEEEEEecccCC
Q psy5413         140 RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD---GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNY  216 (285)
Q Consensus       140 ~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~  216 (285)
                      +|+++++...... ...+...+      +.+|...+.....+.   ..+++++++  ..+       +.+.|.+++-.-.
T Consensus        94 ~~~~~l~~~~G~f-g~r~~~~a------~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~v~~~hnETs  157 (365)
T PLN02452         94 PGDKADFVVTGSW-SKKAAKEA------KKYCKTNVIASGKDEKYTKIPSVSEWE--LTP-------DAKFVHICANETI  157 (365)
T ss_pred             CCCeEEEEECCHH-HHHHHHHH------HHhCCCcEEEecCCCCCCCCCChHHcC--CCC-------CCcEEEECCCCCC
Confidence            7776655433221 11222222      333433222211111   135666642  112       4566766663334


Q ss_pred             CCeee-CCHHHHHHHHHHHHHcCCeEEEeCccC-Chhhh-cccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         217 CGGTV-LPMQWLRELKARCQEHNIPVHMDGARL-PLAEV-CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       217 ~gG~~-~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~~-~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      + |.. .+   ++++.      ++++++|.+++ +...+ .+..++...|.+|++|.|-.++++.++++++
T Consensus       158 t-Gv~~~~---~~~i~------~~~lvVDa~Ss~g~~pidv~~~~v~~~saqK~lGP~Gl~~v~vr~~~l~  218 (365)
T PLN02452        158 H-GVEFKD---YPDVG------NVPLVADMSSNFLSKPVDVSKYGVIYAGAQKNVGPSGVTIVIIRKDLIG  218 (365)
T ss_pred             C-cEecCc---ccccC------CCeEEEECCccccCcccCHHHcCEEEEecccccCCCCeEEEEEcHHHHh
Confidence            4 775 66   66654      28999999987 22221 2345556679999997554567777777664

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=98.57  E-value=2.2e-07  Score=81.62  Aligned_cols=172  Identities=18%  Similarity=0.112  Sum_probs=96.1

Q ss_pred             CCCc-cCChhHHHHHHHHHhHcCCCcE--EEcCChHHHHHH-HH-HHcccc-CC----------CeEEecCCcceeeecc
Q psy5413          94 DDVY-LEDPTCKELQEKAAKLAGKEAA--IFVPSGTMGNLI-AI-MTHCDR-RD----------SEIIVGDCSHIMLWEQ  157 (285)
Q Consensus        94 ~~~y-~~~~~~~~l~~~la~~~g~~~~--~~~~~Gs~a~~~-al-~~~~~~-~g----------~~vi~~~~~h~~~~~~  157 (285)
                      ...| +.-.+..|+++.+++++|.+..  +...|.|--++. ++ .+++.. .|          -+.+|+-+.|-   ..
T Consensus        61 ~RNY~G~l~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYD---RH  137 (425)
T PF12897_consen   61 CRNYPGGLDGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYD---RH  137 (425)
T ss_dssp             TTSS-S-SS--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--H---HH
T ss_pred             ccCCCCccCChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCch---HH
Confidence            4578 7777899999999999998653  444444422221 11 111110 11          13567654421   11


Q ss_pred             cccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec-ccCCCCeeeCCHHHHHHHHHH-HH
Q psy5413         158 GGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN-THNYCGGTVLPMQWLRELKAR-CQ  235 (285)
Q Consensus       158 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~-~~n~~gG~~~~~~~l~~i~~l-a~  235 (285)
                      -++.      +.+|.+++.+|..++| +|++.+|+.+.++     +.+|.|.+.+ =+||+ |.+|+.|-+++++.+ +.
T Consensus       138 Fai~------E~~Giemi~VpM~~dG-PDmD~Ve~LV~~D-----~svKGiWcVP~ySNPt-G~tySde~vrrlA~m~~A  204 (425)
T PF12897_consen  138 FAIT------EHFGIEMIPVPMTEDG-PDMDMVEELVAED-----PSVKGIWCVPKYSNPT-GITYSDEVVRRLAAMKTA  204 (425)
T ss_dssp             HHHH------HHCT-EEEEEEEETTE-E-HHHHHHHTHTS-----TTEEEEEE-SSS-TTT------HHHHHHHHHS--S
T ss_pred             HHHH------HhhCcEEEecCCCCCC-CCHHHHHHHHhcC-----CccceEEeCCCccCCC-CccCCHHHHHHHhcCCcC
Confidence            1233      6789999999997776 7999999999652     2689999988 77888 999999999999988 34


Q ss_pred             HcCCeEEEeCccC--Ch------------hhhc---ccCCe--EEEecccc-cCcceeEEeecCcc
Q psy5413         236 EHNIPVHMDGARL--PL------------AEVC---ASVDT--VMFCLSKG-LGAPVGSILAGPEE  281 (285)
Q Consensus       236 ~~gi~li~Dea~~--~~------------~~~~---~~~dv--~~~s~sK~-l~~p~gg~~~~~~~  281 (285)
                      +.+..++-|.+|.  .+            ...+   .+.|-  ++.|.||. +.|-..++++++++
T Consensus       205 A~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS~~  270 (425)
T PF12897_consen  205 APDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAASEA  270 (425)
T ss_dssp             STT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-HH
T ss_pred             CcCeEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecCHH
Confidence            5799999999977  11            1112   23343  38999995 55544455655543

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PRK12566 glycine dehydrogenase; Provisional

Probab=98.50  E-value=1.3e-06  Score=85.74  Aligned_cols=183  Identities=13%  Similarity=0.081  Sum_probs=117.1

Q ss_pred             cCCcCCCcHHHH-HHHHhcccCCCCcc---------CChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccC
Q psy5413          73 SDTISKPTMEMK-NYMFNCEVGDDVYL---------EDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRR  140 (285)
Q Consensus        73 ~~~~~~~~~~v~-~a~~~~~~~~~~y~---------~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~  140 (285)
                      .+.+.+-.|.+. +.+.+...=...|.         .-+...+++..+++++|.+  ++-+.+.+|.+-++++.+....+
T Consensus        86 ~G~y~~~~P~vi~~~i~~~~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~LtGm~vaNASl~D~atA~aEA~~ma~~~~~  165 (954)
T PRK12566         86 MGYHGTVTPTVILRNVLENPGWYTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDLANASLLDEATAAAEAMALAKRVAK  165 (954)
T ss_pred             ccccCCcCcHHHHHHHHhCchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCchhhhhhhccchhHHHHHHHHHHHHhh
Confidence            455555566554 55544221112222         1133678999999999998  44788888887776665543112


Q ss_pred             --CCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCC
Q psy5413         141 --DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCG  218 (285)
Q Consensus       141 --g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~g  218 (285)
                        .+++++++..|..+..     +-..|....|.+++.           +++++.+.+       ++.+|++.+|+..  
T Consensus       166 ~k~~~~~v~~~~hP~~~~-----v~~t~~~~~g~~i~~-----------~~~~~~~~~-------~~~~v~vq~P~~~--  220 (954)
T PRK12566        166 SKSNRFFVDEHCHPQTLS-----VLRTRAEGFGFELVV-----------DAVDNLAAH-------AVFGALLQYPDTH--  220 (954)
T ss_pred             cCCCEEEECCCCCHHHHH-----HHHHhhhcCCcEEEE-----------cchhhcCCC-------CEEEEEEECCCCc--
Confidence              3468888888855422     111222445666653           334445544       7899999999876  


Q ss_pred             eeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh----hhcccCCeEEE-----ecccccCcceeEEeecCccccc
Q psy5413         219 GTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA----EVCASVDTVMF-----CLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       219 G~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~----~~~~~~dv~~~-----s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      |.+.+   +++|.+++|++|.+++ +.+-. .+.    .-..++|+++.     +..=++|||..|+++.++++++
T Consensus       221 G~i~d---~~~i~~~~h~~gal~~-~~~d~laL~ll~~Pge~GADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R  292 (954)
T PRK12566        221 GEIRD---LRPLIDQLHGQQALAC-VAADLLSLLVLTPPGELGADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKR  292 (954)
T ss_pred             eEEcc---HHHHHHHHHHcCCEEE-EEeCHHHHhCCCChhhcCCcEEeeCCCcCCCCCCCCCCCeeeeeehHHHHh
Confidence            89987   9999999999999866 44422 111    12358999854     3334677799999999887765

>KOG1383|consensus

Probab=98.43  E-value=1.1e-06  Score=78.54  Aligned_cols=162  Identities=18%  Similarity=0.123  Sum_probs=114.5

Q ss_pred             HHHHHHHHHhHcCCCc---EEEcCChHHHHHHHHHHccccC----C---CeEEecCCcceeeecccccccccccccccce
Q psy5413         103 CKELQEKAAKLAGKEA---AIFVPSGTMGNLIAIMTHCDRR----D---SEIIVGDCSHIMLWEQGGASQTSVYSQIGRV  172 (285)
Q Consensus       103 ~~~l~~~la~~~g~~~---~~~~~~Gs~a~~~al~~~~~~~----g---~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~  172 (285)
                      -.++-..++.+++...   ...+.+||++++.+.+......    |   .+++++...|.....   .+      ..+++
T Consensus       122 e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK---~a------~yf~v  192 (491)
T KOG1383|consen  122 EAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEK---AA------RYFEV  192 (491)
T ss_pred             HHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHH---HH------hhEEE
Confidence            3344455566665443   2678889999888887754321    1   235555555654443   22      56699


Q ss_pred             eeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH-cCCeEEEeCccCCh
Q psy5413         173 LMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE-HNIPVHMDGARLPL  250 (285)
Q Consensus       173 ~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~-~gi~li~Dea~~~~  250 (285)
                      ++..+|.+ .++.+|+..+.+.+++       +|.+++.+-++-|+ |.+-+   +++|.++..+ +++++++|.+-+++
T Consensus       193 ~l~~V~~~~~~~~~D~~k~~~~i~e-------Nti~lv~~~~~~p~-G~~e~---ve~l~~l~~e~w~ipiHvDa~~GgF  261 (491)
T KOG1383|consen  193 ELREVPLDEGDYRVDPGKVVRMIDE-------NTIMLVGSLPNFPT-GEIED---VEKLADLLLEIWDIPIHVDACLGGF  261 (491)
T ss_pred             EEEeeeccccceEecHHHHHHHhcc-------ceEEEEEEcCCCCc-cchhh---HHHHHHHHHHHhCCceeecccCccc
Confidence            99999987 5678999999999999       89999999999999 89988   9999999999 99999999997633


Q ss_pred             hh----h--------cccCCeEEEecccccCc--ceeEEeecCccccc
Q psy5413         251 AE----V--------CASVDTVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       251 ~~----~--------~~~~dv~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      ..    .        ..++-.+..+.||.-..  -.+.++-.+++++.
T Consensus       262 i~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~  309 (491)
T KOG1383|consen  262 INPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKELLP  309 (491)
T ss_pred             cccccccCccccccCCCCceeEeeccceeeeeecCcEEEEEccccccc
Confidence            22    1        12333458888995322  35566667776553

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=98.40  E-value=2.9e-06  Score=75.84  Aligned_cols=181  Identities=9%  Similarity=-0.004  Sum_probs=103.8

Q ss_pred             CCCcHHHHHHHHhcccC------------CCCccCChhHHHHHHHHHhHcCCCc---E-EEcCChHHHHHHHHHHccccC
Q psy5413          77 SKPTMEMKNYMFNCEVG------------DDVYLEDPTCKELQEKAAKLAGKEA---A-IFVPSGTMGNLIAIMTHCDRR  140 (285)
Q Consensus        77 ~~~~~~v~~a~~~~~~~------------~~~y~~~~~~~~l~~~la~~~g~~~---~-~~~~~Gs~a~~~al~~~~~~~  140 (285)
                      ..-+++|++++++.+.+            |..-.....+.++++.+.++++.+.   + ++..|||.+.+++...++ .+
T Consensus        13 a~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll-~~   91 (364)
T PRK12462         13 GALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFS-RP   91 (364)
T ss_pred             cCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcC-CC
Confidence            33577888888755543            1111122457788899999998632   4 566668999999999988 47


Q ss_pred             CCeEE--ecCCcceeeecccccccccccccccc-eeeeeee--cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccC
Q psy5413         141 DSEII--VGDCSHIMLWEQGGASQTSVYSQIGR-VLMRGVT--NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHN  215 (285)
Q Consensus       141 g~~vi--~~~~~h~~~~~~~~~~~~~~~~~~~g-~~~~~~~--~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n  215 (285)
                      |++++  +....++  ..+...+      +.+| +.+....  ..+...++++++  .+.+       +.+.|.+++..-
T Consensus        92 g~~~~~~~~tG~fg--~r~~~ea------~~~g~v~~~~~~~~~~~~~~p~~~~~--~~~~-------d~~~v~~t~NET  154 (364)
T PRK12462         92 GAAAPEYVTTGYWS--RKAIGEA------SRVAAMRVVWDGAASGYRTLPSLAEL--DWDA-------RAPFRHYVSNET  154 (364)
T ss_pred             CCcEEEEEeCCHHH--HHHHHHH------HhcCCceEecCcCCCCCCcCCCHHHh--ccCC-------CCcEEEEccCCC
Confidence            77543  3333221  1111122      2233 2222211  111233555554  1222       455666655333


Q ss_pred             CCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC--ChhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         216 YCGGTVLPMQWLRELKARCQEHNIPVHMDGARL--PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       216 ~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~--~~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      .+ |..++        ++.+.+++++|+|.+-.  +...-.+..|++..+..|+||.|-.++++-+++.++
T Consensus       155 st-Gv~~~--------~~~~~~~~llvvD~sS~~~s~pid~~~~dvi~agsQKnlgP~Gltvvivs~~al~  216 (364)
T PRK12462        155 VE-GLQFP--------DAAGLPDSPLIADMSSDFMSRPFDVEAYGMVYAHAQKNLGPAGVTVAIIRRALLE  216 (364)
T ss_pred             Cc-eEecC--------cccccCCCeEEEEcCchhhCCCCChHHccEEEeeccccCCCCceEEEEECHHHHh
Confidence            33 88886        22334699999999966  221122345999999999999554466666776664

>KOG1405|consensus

Probab=98.37  E-value=6.6e-07  Score=77.44  Aligned_cols=84  Identities=14%  Similarity=0.109  Sum_probs=63.1

Q ss_pred             CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCCe
Q psy5413         185 FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVDT  259 (285)
Q Consensus       185 ~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~dv  259 (285)
                      -+++++|+.|.+..+. ...+++|++|+.++.+|-.-.+++++++|+++|++||+.+|+||+|++..     -+.++.++
T Consensus       253 ~Cl~~Ve~li~~~~~k-~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l  331 (484)
T KOG1405|consen  253 GCLAEVEDLIVKYRKK-KKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNL  331 (484)
T ss_pred             hHHHHHHHHHHHHhhc-CCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCC
Confidence            4678889988774321 23789999999999997777899999999999999999999999998321     12233322


Q ss_pred             E----EEecccccC
Q psy5413         260 V----MFCLSKGLG  269 (285)
Q Consensus       260 ~----~~s~sK~l~  269 (285)
                      -    +++|||=|-
T Consensus       332 ~~PpD~vTFSKK~q  345 (484)
T KOG1405|consen  332 DSPPDVVTFSKKFQ  345 (484)
T ss_pred             CCCccceehhhhhh
Confidence            1    667778654

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=98.18  E-value=3.5e-06  Score=74.83  Aligned_cols=157  Identities=21%  Similarity=0.246  Sum_probs=91.7

Q ss_pred             HHHHHHhHcCCC---cEEEcCChH-HHHHHHHHHcc-ccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC
Q psy5413         106 LQEKAAKLAGKE---AAIFVPSGT-MGNLIAIMTHC-DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ  180 (285)
Q Consensus       106 l~~~la~~~g~~---~~~~~~~Gs-~a~~~al~~~~-~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  180 (285)
                      |...+.+..|..   .++.++-++ +++...+.++. +..++.|+.+...|.+...+...+         |.+++.++..
T Consensus        61 l~~d~~~~~G~~~~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~A---------Gl~~~vV~~~  131 (389)
T PF05889_consen   61 LVLDALRLAGLRSVKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERA---------GLEPVVVENV  131 (389)
T ss_dssp             HHHHHHHHTTHTTHCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHT---------T-EEEEE-EE
T ss_pred             HHHHHHHHcCCccccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhc---------CCeEEEeecc
Confidence            334444455654   345555443 23333333332 224567887777776665543333         7676666632


Q ss_pred             --CC-CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC--------
Q psy5413         181 --KD-GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP--------  249 (285)
Q Consensus       181 --~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~--------  249 (285)
                        ++ -..|++++++++++.    +.+..+.++++++... +...|  ++++|+++|++|||+.++-.||+-        
T Consensus       132 ~~~d~l~td~~~ie~~i~~~----G~~~iLcvltttscfa-pr~~D--~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~  204 (389)
T PF05889_consen  132 LEGDELITDLEAIEAKIEEL----GADNILCVLTTTSCFA-PRLPD--DIEEIAKICKEYDIPHLVNNAYGVQSSKCMHL  204 (389)
T ss_dssp             EETTEEEEHHHHHHHHHHHH----CGGGEEEEEEESSTTT-TB------HHHHHHHHHHHT--EEEEGTTTTT-HHHHHH
T ss_pred             CCCCeeeccHHHHHHHHHHh----CCCCeEEEEEecCccC-CCCCc--cHHHHHHHHHHcCCceEEccchhhhHHHHHHH
Confidence              22 246889999999763    2244455555555444 45444  499999999999999999999982        


Q ss_pred             hhhh--cccCCeEEEecccccCcceeEEeec
Q psy5413         250 LAEV--CASVDTVMFCLSKGLGAPVGSILAG  278 (285)
Q Consensus       250 ~~~~--~~~~dv~~~s~sK~l~~p~gg~~~~  278 (285)
                      +...  ....|++.-+..|.|-.|.||.++.
T Consensus       205 i~~a~~~GRvda~vqS~dkNF~VPvGgai~A  235 (389)
T PF05889_consen  205 IQQAWRVGRVDAFVQSTDKNFMVPVGGAIMA  235 (389)
T ss_dssp             HHHHHHHSTCSEEEEEHHHHHCEESSHEEEE
T ss_pred             HHHHHhcCCcceeeeecCCCEEecCCCcEEE
Confidence            1111  2578999999999998888876653

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>KOG1411|consensus

Probab=97.79  E-value=0.0007  Score=58.90  Aligned_cols=181  Identities=18%  Similarity=0.120  Sum_probs=112.7

Q ss_pred             cHHHHHHHHhccc--CCCCccCChhHHHHHHHHHhHc-CCC-------cE--EEcCChHHHHHHHHHHcc-ccCCCeEEe
Q psy5413          80 TMEMKNYMFNCEV--GDDVYLEDPTCKELQEKAAKLA-GKE-------AA--IFVPSGTMGNLIAIMTHC-DRRDSEIIV  146 (285)
Q Consensus        80 ~~~v~~a~~~~~~--~~~~y~~~~~~~~l~~~la~~~-g~~-------~~--~~~~~Gs~a~~~al~~~~-~~~g~~vi~  146 (285)
                      -|.|++|-++...  .+-.|.+-.+..|+.+.-+++. |..       +.  +.+-||+.|+-.+...+. ..++..|++
T Consensus        72 L~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~i  151 (427)
T KOG1411|consen   72 LPSVRKAEQQLASLSLDKEYLPITGLAEFNKLSAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYI  151 (427)
T ss_pred             eHHHHHHHHHHhhhcccchhccccchHHHHHHHHHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceee
Confidence            4566666443332  1346666666788888888873 432       22  455678877766554432 235677999


Q ss_pred             cCCcceeeecccccccccccccccceeeeee--ecCCCCCCCHHHHHHHhcccccccCCceEEEEEec-ccCCCCeeeCC
Q psy5413         147 GDCSHIMLWEQGGASQTSVYSQIGRVLMRGV--TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN-THNYCGGTVLP  223 (285)
Q Consensus       147 ~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~-~~n~~gG~~~~  223 (285)
                      ++++.+.....-         ...|..+..+  ..+....+|.+.+.+-+.+..    .. ..|++-. -+||| |.=..
T Consensus       152 p~PTWgNh~~if---------~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p----~g-s~ilLhaCaHNPT-GvDPt  216 (427)
T KOG1411|consen  152 PDPTWGNHKNIF---------KDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAP----EG-SIILLHACAHNPT-GVDPT  216 (427)
T ss_pred             cCCcccccCccc---------cccCcceeeeeeccccccccchHHHHHHHhcCC----CC-cEEEeehhhcCCC-CCCcc
Confidence            988754432211         1224443333  233445578777776665521    12 2333333 89999 88888


Q ss_pred             HHHHHHHHHHHHHcCCeEEEeCccCChh-------------hhcccCCeE-EEecccccCc---ceeEE
Q psy5413         224 MQWLRELKARCQEHNIPVHMDGARLPLA-------------EVCASVDTV-MFCLSKGLGA---PVGSI  275 (285)
Q Consensus       224 ~~~l~~i~~la~~~gi~li~Dea~~~~~-------------~~~~~~dv~-~~s~sK~l~~---p~gg~  275 (285)
                      .|..++|.++.++.+.+-++|-+|-++.             ++..+.+++ +-|+.|.+|.   ..|++
T Consensus       217 ~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~  285 (427)
T KOG1411|consen  217 KEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGAL  285 (427)
T ss_pred             HHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhcccee
Confidence            8999999999999999999999966221             222455665 8999999887   45544

>KOG1412|consensus

Probab=97.28  E-value=0.0034  Score=54.09  Aligned_cols=135  Identities=14%  Similarity=0.098  Sum_probs=86.6

Q ss_pred             EEcCChHHHHHHHHHHccc-cCCCeEEecCCcceeeecccccccccccccccc-eeeeeeec--CCCCCCCHHHHHHHhc
Q psy5413         120 IFVPSGTMGNLIAIMTHCD-RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGR-VLMRGVTN--QKDGTFDLDEMEAKFS  195 (285)
Q Consensus       120 ~~~~~Gs~a~~~al~~~~~-~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g-~~~~~~~~--~~~~~~d~~~l~~~i~  195 (285)
                      +.+-||+.|+.++...+.. ...+.|++++++......   +.      ...| ..+...+.  .+....|++.+...|+
T Consensus       103 vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~---if------~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~  173 (410)
T KOG1412|consen  103 VQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHA---IF------EKAGFTTVATYPYWDAENKCVDLEGFLSDLE  173 (410)
T ss_pred             eeeccccchhhhhHHHHHHhcccceeEecCCchhHHHH---HH------HHcCCceeeeeeeecCCCceecHHHHHHHHh
Confidence            6788999999888776532 234558888776322111   11      1123 12223332  2334579998888887


Q ss_pred             ccccccCCceE-EEEEec-ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------------hhcccCCeE
Q psy5413         196 TADNIHCASTS-LVCVEN-THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------------EVCASVDTV  260 (285)
Q Consensus       196 ~~~~~~~~~~~-~v~i~~-~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------------~~~~~~dv~  260 (285)
                      ..      ... .+++.. -+||| |.=...|...+|+++.++.+.+.++|-+|-++.             +...+..++
T Consensus       174 ~A------Pe~si~iLhaCAhNPT-GmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~f  246 (410)
T KOG1412|consen  174 SA------PEGSIIILHACAHNPT-GMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELF  246 (410)
T ss_pred             hC------CCCcEEeeeccccCCC-CCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEE
Confidence            62      223 333333 69999 777778889999999999999999999965221             111344444


Q ss_pred             -EEecccccCc
Q psy5413         261 -MFCLSKGLGA  270 (285)
Q Consensus       261 -~~s~sK~l~~  270 (285)
                       +-||+|.+|.
T Consensus       247 v~QSFaKNfGl  257 (410)
T KOG1412|consen  247 VCQSFAKNFGL  257 (410)
T ss_pred             EEhhhhhhccc
Confidence             8999999887

>KOG3846|consensus

Probab=97.01  E-value=0.005  Score=53.01  Aligned_cols=205  Identities=15%  Similarity=0.156  Sum_probs=120.7

Q ss_pred             ccccccccCCeeeeeccCCcCCCcHHHHHHHHhcc-------c-CCCCcc--CCh-hHHHHHHHHHhHcCCCc--EEEcC
Q psy5413          57 VPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCE-------V-GDDVYL--EDP-TCKELQEKAAKLAGKEA--AIFVP  123 (285)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~-------~-~~~~y~--~~~-~~~~l~~~la~~~g~~~--~~~~~  123 (285)
                      ..+.+...+..++.|-.++.+..+....+.+.+.+       . +|. -+  ++. .-...-..++.+.|...  +.++|
T Consensus        57 ~d~sLv~~d~~~iYlcGNSLGLmPK~t~~~~~~eLDkWak~av~gH~-~GkvPW~~~De~il~l~~~iVGA~e~EvavmN  135 (465)
T KOG3846|consen   57 ADPSLVSDDKPVIYLCGNSLGLMPKSTRNSINAELDKWAKCAVEGHF-KGKVPWVSIDEPILPLLAPIVGAQENEVAVMN  135 (465)
T ss_pred             CCccccCCCCCeEEEeccccccCchhhHhHHHHHHHHHHhhhhhccc-ccccceeecchhhhhhhhhhccCCchhhhhHh
Confidence            33444555667777776666654444444333222       1 111 11  111 12234455666677643  34555


Q ss_pred             ChHHHHHHHHHHccccCCC---eEEecCCc----ceeeecccccccccccccccce----eeeeeec-CCCCCCCHHHHH
Q psy5413         124 SGTMGNLIAIMTHCDRRDS---EIIVGDCS----HIMLWEQGGASQTSVYSQIGRV----LMRGVTN-QKDGTFDLDEME  191 (285)
Q Consensus       124 ~Gs~a~~~al~~~~~~~g~---~vi~~~~~----h~~~~~~~~~~~~~~~~~~~g~----~~~~~~~-~~~~~~d~~~l~  191 (285)
                      +=+.-+...+..+. +|..   +|+....+    |+....-.         +..|.    .++-+.. ..+..+..|++.
T Consensus       136 sLTvNlh~Ll~sFy-KPTekR~KILlE~kaFPSDhYAiesQ~---------~lhG~~~e~sm~~iePREGEetlRteDIL  205 (465)
T KOG3846|consen  136 SLTVNLHSLLISFY-KPTEKRFKILLEKKAFPSDHYAIESQC---------KLHGISPENSMIQIEPREGEETLRTEDIL  205 (465)
T ss_pred             hhhhHHHHHHHHhc-CCcchhhhhhhccCCCCchHHHHHhhh---------hhcCCChHHheEEecccccccchhHHHHH
Confidence            55544445555555 5543   25543222    22211111         11122    2223322 223457889999


Q ss_pred             HHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----ChhhhcccCCeEEEecccc
Q psy5413         192 AKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL----PLAEVCASVDTVMFCLSKG  267 (285)
Q Consensus       192 ~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~  267 (285)
                      +.|++    .++.+++|.++.++..| |+.++   +.+|-..-+..|+++=.|-+|+    ++.--.+++|+-|.|..|.
T Consensus       206 d~IEk----ngDeiA~v~fSGvqyYT-GQ~Fd---i~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCSYKY  277 (465)
T KOG3846|consen  206 DTIEK----NGDEIALVCFSGVQYYT-GQYFD---IGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFACWCSYKY  277 (465)
T ss_pred             HHHHh----cCCeEEEEEeecceeec-ccccc---hhhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEEEeeecc
Confidence            99988    46689999999999999 99999   9999987777899999999988    3333458999999999998


Q ss_pred             cCc---ceeEEeecCc
Q psy5413         268 LGA---PVGSILAGPE  280 (285)
Q Consensus       268 l~~---p~gg~~~~~~  280 (285)
                      +..   .+||..+-.+
T Consensus       278 lnaGaGgIgGlFvHek  293 (465)
T KOG3846|consen  278 LNAGAGGIGGLFVHEK  293 (465)
T ss_pred             cccCCCccceeeeehh
Confidence            755   4566555433

>KOG3843|consensus

Probab=96.90  E-value=0.00065  Score=57.10  Aligned_cols=88  Identities=23%  Similarity=0.351  Sum_probs=62.4

Q ss_pred             CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC-----h-----hhh
Q psy5413         184 TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP-----L-----AEV  253 (285)
Q Consensus       184 ~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~-----~-----~~~  253 (285)
                      ..|++.+++.|++.      ...+|+.-+.+..+ -..-.++.+++|+.+|-.|+++-|+..+|+-     +     ..-
T Consensus       140 ~tdleav~~~iee~------g~dcilci~sttsc-fapr~pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~~  212 (432)
T KOG3843|consen  140 ITDLEAVEAIIEEL------GEDCILCIHSTTSC-FAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAAE  212 (432)
T ss_pred             HHhHHHHHHHHHHh------CCceEEEEeecccc-cCCCCCchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHhh
Confidence            46999999999874      22333333323222 3444567899999999999999999999881     1     111


Q ss_pred             cccCCeEEEecccccCcceeEEeec
Q psy5413         254 CASVDTVMFCLSKGLGAPVGSILAG  278 (285)
Q Consensus       254 ~~~~dv~~~s~sK~l~~p~gg~~~~  278 (285)
                      +...|.++-|+.|.|..|.||.++.
T Consensus       213 ~grida~vqsldknf~vpvggaiia  237 (432)
T KOG3843|consen  213 CGRIDAFVQSLDKNFMVPVGGAIIA  237 (432)
T ss_pred             hccHHHHHHHhhhcceeecchhHhh
Confidence            3466888899999999999987753

>KOG2040|consensus

Probab=96.41  E-value=0.027  Score=53.26  Aligned_cols=153  Identities=18%  Similarity=0.166  Sum_probs=95.5

Q ss_pred             HHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC
Q psy5413         105 ELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD  182 (285)
Q Consensus       105 ~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  182 (285)
                      ..+..++++.|.+-  +-+.+-|+.|-++...+....++++.+++...|..+.....     ..+..+|.+++..     
T Consensus       167 NyQTmi~dlTGL~~aNASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~-----TRa~~~~i~v~~~-----  236 (1001)
T KOG2040|consen  167 NYQTMITDLTGLPMANASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVK-----TRAKGFGIKVVVS-----  236 (1001)
T ss_pred             hhHHhhhhccCCcccchhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhh-----ccccccceeEEec-----
Confidence            34566688888764  46778899888888877665556678888888866532111     1113344443222     


Q ss_pred             CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----hhhcccCC
Q psy5413         183 GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----AEVCASVD  258 (285)
Q Consensus       183 ~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----~~~~~~~d  258 (285)
                         |+++....        .+++..|++..|...  |.+.+   ..++++.+++.|..+++----..+    .....++|
T Consensus       237 ---~~~~~~~s--------~~~v~gvlvQYP~t~--G~i~d---~~el~~~a~~~~s~vv~atDLLaLtiLrpPgefGaD  300 (1001)
T KOG2040|consen  237 ---DIKEADYS--------SKDVSGVLVQYPDTE--GSVLD---FDELVELAHANGSLVVMATDLLALTILRPPGEFGAD  300 (1001)
T ss_pred             ---CHHHhhcc--------ccceeEEEEEcCCCC--CcccC---HHHHHHHhhccCceEEEeehhhHHHccCChhhcCce
Confidence               33222211        126889999998876  89999   888899999999887653221111    11224889


Q ss_pred             eEEEeccc-----ccCcceeEEeecCcccc
Q psy5413         259 TVMFCLSK-----GLGAPVGSILAGPEEFI  283 (285)
Q Consensus       259 v~~~s~sK-----~l~~p~gg~~~~~~~~i  283 (285)
                      +.+.|...     ++|||.+||.+..+++.
T Consensus       301 IavGSsQRFGVPlGYGGPHAaFfAv~~~l~  330 (1001)
T KOG2040|consen  301 IAVGSSQRFGVPLGYGGPHAAFFAVSESLV  330 (1001)
T ss_pred             eeeccccccCccccCCCchHHHHHHHHHHH
Confidence            88766544     45667777776655543

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=96.15  E-value=0.0041  Score=54.45  Aligned_cols=150  Identities=18%  Similarity=0.095  Sum_probs=71.2

Q ss_pred             hhHHHHHHHHHhHc---CC-----CcEEEcCChHHHHHHHHHHcccc---CCC--eEEecCCcceeeecccccccccccc
Q psy5413         101 PTCKELQEKAAKLA---GK-----EAAIFVPSGTMGNLIAIMTHCDR---RDS--EIIVGDCSHIMLWEQGGASQTSVYS  167 (285)
Q Consensus       101 ~~~~~l~~~la~~~---g~-----~~~~~~~~Gs~a~~~al~~~~~~---~g~--~vi~~~~~h~~~~~~~~~~~~~~~~  167 (285)
                      -...+|++.|.++.   |.     ...+|-++.++-+.+|+-++...   .+.  .|+...+|+.......     .++ 
T Consensus        43 f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt-----~~f-  116 (363)
T PF04864_consen   43 FISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQT-----DFF-  116 (363)
T ss_dssp             TS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHC-----CCT-
T ss_pred             eccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHH-----Hhc-
Confidence            34677888887774   32     22466666677777777776532   111  3776777765443211     111 


Q ss_pred             cccceeeeeeec-CCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413         168 QIGRVLMRGVTN-QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA  246 (285)
Q Consensus       168 ~~~g~~~~~~~~-~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea  246 (285)
                         ........- ...+.          +.    .....-.=+++.||||. |.+-.     .   +.+..+..+|.|-|
T Consensus       117 ---~s~~y~w~Gda~~~~----------~~----~~~~~~IElVTSPNNPD-G~lr~-----~---V~~g~~~k~I~D~A  170 (363)
T PF04864_consen  117 ---DSRLYKWAGDASNFK----------NS----DNPSPYIELVTSPNNPD-GQLRE-----A---VLNGSSGKVIHDLA  170 (363)
T ss_dssp             ----BTTEEEEEECCCGT----------T-----S-CCGEEEEEESS-TTT---------------SSTTTEEEEEEE-T
T ss_pred             ---cccCccccccHHhhc----------cC----CCCCCeEEEEeCCCCCc-ccccc-----h---hcCCCCcceeeeee
Confidence               111111111 11110          11    01134455688899999 55422     1   23556677899999


Q ss_pred             cC----ChhhhcccCCeEEEeccccc--Cc-ceeEEeecCccc
Q psy5413         247 RL----PLAEVCASVDTVMFCLSKGL--GA-PVGSILAGPEEF  282 (285)
Q Consensus       247 ~~----~~~~~~~~~dv~~~s~sK~l--~~-p~gg~~~~~~~~  282 (285)
                      |.    ........-|+.++|+||.-  +| .+|..++.++++
T Consensus       171 YYWPhyTpI~~~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~V  213 (363)
T PF04864_consen  171 YYWPHYTPITAPADHDIMLFTLSKLTGHAGSRFGWALVKDEEV  213 (363)
T ss_dssp             T-STTTS---S-B--SEEEEEHHHHCS-GGG-EEEEEES-HHH
T ss_pred             eecccccccCCCCCCceEEEEEecccCccccccceeeecCHHH
Confidence            66    22223356689999999953  34 677777777654

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=95.88  E-value=0.02  Score=44.97  Aligned_cols=54  Identities=11%  Similarity=0.161  Sum_probs=42.1

Q ss_pred             ccCChhHHHHHHHHHhHc----C--C----CcEEEcCChHHHHHHHHHHccccCCCeEEecCCcc
Q psy5413          97 YLEDPTCKELQEKAAKLA----G--K----EAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSH  151 (285)
Q Consensus        97 y~~~~~~~~l~~~la~~~----g--~----~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h  151 (285)
                      |.......+|++.+++++    |  .    +.+++++++++|++.++.+++ .+||.|+++.++|
T Consensus        88 Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~-dpGD~VlVp~P~Y  151 (153)
T PLN02994         88 FQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIA-DPGDAFLVPTPYY  151 (153)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHc-CCCCEEEEeCCCC
Confidence            554455777888888775    4  1    245888899999999999988 5999999998876

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=93.92  E-value=0.87  Score=40.46  Aligned_cols=158  Identities=14%  Similarity=0.126  Sum_probs=80.4

Q ss_pred             hhHHHHHHHHHhHcCCCc---EEEcCCh-HHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccc--eee
Q psy5413         101 PTCKELQEKAAKLAGKEA---AIFVPSG-TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGR--VLM  174 (285)
Q Consensus       101 ~~~~~l~~~la~~~g~~~---~~~~~~G-s~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g--~~~  174 (285)
                      ....+.++.+.++++.+.   ++|+.+| +.....+...++.+.+.. ++...++....  ..-+      ...+  ..+
T Consensus        50 ~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nLl~~~~~~-yv~~g~Ws~~a--~~eA------~~~~~~~~~  120 (365)
T COG1932          50 NVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNLLGKRGTD-YVDTGAWSEFA--IKEA------KKVGKQPKL  120 (365)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhhhcccCce-eEeeeehhHhH--HHHH------HHhcccccc
Confidence            347788899999998764   4566554 666777777766433321 22222111100  0000      1111  111


Q ss_pred             eeee---cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC--C
Q psy5413         175 RGVT---NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL--P  249 (285)
Q Consensus       175 ~~~~---~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~--~  249 (285)
                      ....   ......++++..+  +.+       +.+.|.++ +|+++.|.-++.  ...+..     +.++++|..-.  +
T Consensus       121 ~~~~~~~~~~~~iP~~~~~~--~~~-------~~ayv~~~-~NeTi~Gv~v~~--~p~~~~-----~~~~v~D~SS~ils  183 (365)
T COG1932         121 IDARIEEAGYGSIPDLSKWD--FSD-------NDAYVHFC-WNETISGVEVPE--LPDIGS-----DGLLVADASSAILS  183 (365)
T ss_pred             cccceeccCccCCCChhhcc--cCC-------CccEEEEe-cCCcccceEccC--CCCCCC-----CceEEEecccHHhc
Confidence            1111   1111224444433  332       33334443 333333777661  222221     27899998855  3


Q ss_pred             hhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         250 LAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       250 ~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      ..--...+|++.++..|.+|+---++++-++++++
T Consensus       184 r~iDvsk~dviyagaQKnlGpaGltvvIvr~~~l~  218 (365)
T COG1932         184 RPIDVSKYDVIYAGAQKNLGPAGLTVVIVRPDLLE  218 (365)
T ss_pred             CCCChhHcceEEEehhhccCccceEEEEEcHHHHh
Confidence            33334688999999999999722455566666665

>smart00642 Aamy Alpha-amylase domain

Probab=81.46  E-value=4.2  Score=32.31  Aligned_cols=59  Identities=17%  Similarity=0.187  Sum_probs=38.6

Q ss_pred             CHHHHHHHhcccccccCCceEEEEEecccCCCCe-----------------eeCCHHHHHHHHHHHHHcCCeEEEeCcc
Q psy5413         186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGG-----------------TVLPMQWLRELKARCQEHNIPVHMDGAR  247 (285)
Q Consensus       186 d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG-----------------~~~~~~~l~~i~~la~~~gi~li~Dea~  247 (285)
                      |++.+.+.+..-.+   -.+.+|.+.+++....+                 ..-+.++++++++.||++|+-||+|-+.
T Consensus        17 ~~~gi~~~l~yl~~---lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~   92 (166)
T smart00642       17 DLQGIIEKLDYLKD---LGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVI   92 (166)
T ss_pred             CHHHHHHHHHHHHH---CCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence            56666666532111   14667777775433210                 2224578999999999999999999883

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	285
1jg8_A	347	Crystal Structure Of Threonine Aldolase (Low-Specif		2e-42
2fm1_A	355	Crystal Structure Of L-allo-threonine Aldolase (tm1		2e-42
1lw4_A	347	X-Ray Structure Of L-Threonine Aldolase (Low-Specif		7e-39
3lws_A	357	Crystal Structure Of Putative Aromatic Amino Acid B		1e-08
3pj0_A	359	Crystal Structure Of A Putative L-Allo-Threonine Al		7e-07

>pdb|1JG8|A Chain A, Crystal Structure Of Threonine Aldolase (Low-Specificity) Length = 347

Iteration: 1
 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/226 (41%), Positives = 127/226 (56%), Gaps = 18/226 (7%)
Query: 69  VDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCXXXXXXXXXXXXXXXXIFVPSGTMG 128
           +D+RSDT++KPT EM+  M   EVGDDVY EDPT                 +FVPSGTMG
Sbjct: 6   IDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMG 65
Query: 129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLD 188
           N ++IM H  R D  I+  D SHI  +E G  +  S        +M      K+G  D D
Sbjct: 66  NQVSIMAHTQRGDEVILEAD-SHIFWYEVGAMAVLSG-------VMPHPVPGKNGAMDPD 117
Query: 189 EMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248
           ++  K     NIH   TSL+ +ENTHN  GG V+P++ ++E+    +EH I VH+DGAR+
Sbjct: 118 DVR-KAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARI 176
Query: 249 ---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
                    P+ E     D+VMFCLS GL APVGS++ G  +FI++
Sbjct: 177 FNASIASGVPVKEYAGYADSVMFCLSXGLCAPVGSVVVGDRDFIER 222

>pdb|2FM1|A Chain A, Crystal Structure Of L-allo-threonine Aldolase (tm1744) From Thermotoga Maritima At 2.25 A Resolution Length = 355

Iteration: 1
 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/226 (41%), Positives = 127/226 (56%), Gaps = 18/226 (7%)
Query: 69  VDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCXXXXXXXXXXXXXXXXIFVPSGTMG 128
           +D+RSDT++KPT EM+  M   EVGDDVY EDPT                 +FVPSGTMG
Sbjct: 14  IDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMG 73
Query: 129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLD 188
           N ++IM H  R D  I+  D SHI  +E G  +  S        +M      K+G  D D
Sbjct: 74  NQVSIMAHTQRGDEVILEAD-SHIFWYEVGAMAVLSG-------VMPHPVPGKNGAMDPD 125
Query: 189 EMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248
           ++  K     NIH   TSL+ +ENTHN  GG V+P++ ++E+    +EH I VH+DGAR+
Sbjct: 126 DVR-KAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARI 184
Query: 249 ---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
                    P+ E     D+VMFCLS GL APVGS++ G  +FI++
Sbjct: 185 FNASIASGVPVKEYAGYADSVMFCLSXGLCAPVGSVVVGDRDFIER 230

>pdb|1LW4|A Chain A, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity) In Complex With L-Allo-Threonine Length = 347

Iteration: 1
 Score =  157 bits (397), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 89/230 (38%), Positives = 123/230 (53%), Gaps = 26/230 (11%)
Query: 69  VDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCXXXXXXXXXXXXXXXXIFVPSGTMG 128
           +D+RSDT++KPT E +      EVGDDVY EDPT                 +FVPSGT G
Sbjct: 6   IDLRSDTVTKPTEEXRKAXAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTXG 65
Query: 129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ----KDGT 184
           N ++I  H  R D  I+  D SHI  +E G  +           ++ GV       K+G 
Sbjct: 66  NQVSIXAHTQRGDEVILEAD-SHIFWYEVGAXA-----------VLSGVXPHPVPGKNGA 113
Query: 185 FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD 244
            D D++  K     NIH   TSL+ +ENTHN  GG V+P++ ++E+    +EH I VH+D
Sbjct: 114 XDPDDVR-KAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHID 172
Query: 245 GARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
           GAR+         P+ E     D+V FCLS GL APVGS++ G  +FI++
Sbjct: 173 GARIFNASIASGVPVKEYAGYADSVXFCLSXGLCAPVGSVVVGDRDFIER 222

>pdb|3LWS|A Chain A, Crystal Structure Of Putative Aromatic Amino Acid Beta- Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1) FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution Length = 357

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 69/175 (39%), Gaps = 26/175 (14%)
Query: 120 IFVPSGTMGNLIAIMTHCDRRDSEIIVGD-CSHIMLWEQGGASQTSVYSQIGRVLMRGVT 178
           +F PSGT    +A+    D  D+  +      H+ + EQ G  +      I       + 
Sbjct: 66  VFFPSGTXAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETI-------LV 118
Query: 179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN 238
              D    LDE++A      +I C     + +E      GG       L  +   C+E  
Sbjct: 119 GAADRLXTLDEIKA----LPDIAC-----LLLELPQREIGGVAPAFSELETISRYCRERG 169
Query: 239 IPVHMDGARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284
           I +H+DGARL           AE+    D++      GLG   G+ILAGP  F Q
Sbjct: 170 IRLHLDGARLFEXLPYYEKTAAEIAGLFDSIYISFYXGLGGIAGAILAGPAAFCQ 224

>pdb|3PJ0|A Chain A, Crystal Structure Of A Putative L-Allo-Threonine Aldolase (Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A Resolution Length = 359

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 29/178 (16%)
Query: 120 IFVPSGTMGNLIAIMTHCDRRDSE-IIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT 178
           +F PSGT    IA+    DR+++  +     SH+ + EQ G  +     QI  +L+ G  
Sbjct: 67  VFFPSGTXAQQIALRIWADRKENRRVAYHPLSHLEIHEQDGLKELQ---QITPLLL-GTA 122
Query: 179 NQKDGTFDLDEMEAKFSTADNIHC--ASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE 236
           NQ               T D+I       S V +E      GG +   + L ++   C E
Sbjct: 123 NQ-------------LLTIDDIKSLREPVSSVLIELPQREIGGQLPAFEELEKISEYCHE 169
Query: 237 HNIPVHMDGARL----PL-----AEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
             I +H+DGARL    P       E+CA  D+V      G+G   G+ILAG ++F+Q+
Sbjct: 170 QGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYXGIGGIAGAILAGNDDFVQE 227

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	285
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	1e-104
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	1e-101
3pj0_A	359	LMO0305 protein; structural genomics, joint center	3e-98
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	2e-74
1svv_A	359	Threonine aldolase; structural genomics, structura	4e-71
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	1e-66
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	3e-42
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	8e-38
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	4e-13
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	5e-07
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	2e-05
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	2e-04

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* Length = 347

 Score =  305 bits (784), Expect = e-104
 Identities = 102/226 (45%), Positives = 140/226 (61%), Gaps = 18/226 (7%)

Query: 69  VDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMG 128
           +D+RSDT++KPT EM+  M   EVGDDVY EDPT  EL+  AA+  GKEAA+FVPSGTMG
Sbjct: 6   IDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMG 65

Query: 129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLD 188
           N ++IM H  R D E+I+   SHI  +E G        + +  V+   V  + +G  D D
Sbjct: 66  NQVSIMAHTQRGD-EVILEADSHIFWYEVGAM------AVLSGVMPHPVPGK-NGAMDPD 117

Query: 189 EMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248
           ++        NIH   TSL+ +ENTHN  GG V+P++ ++E+    +EH I VH+DGAR+
Sbjct: 118 DVRKAIR-PRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARI 176

Query: 249 ---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
                    P+ E     D+VMFCLSKGL APVGS++ G  +FI++
Sbjct: 177 FNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIER 222

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} Length = 357

 Score =  298 bits (764), Expect = e-101
 Identities = 55/240 (22%), Positives = 87/240 (36%), Gaps = 34/240 (14%)

Query: 64  VNIRTVDIRSDTISKPT--------MEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAG 115
           +N      +  T             ++        E+  D Y      +  ++K A + G
Sbjct: 2   MNRLRTSFQQTTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLG 61

Query: 116 KEAAIFVPSGTMGNLIAIMTHCDRRD-SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLM 174
            + A+F PSGTM   +A+    D  D   +      H+ + EQ G        ++  +  
Sbjct: 62  MDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGL------KELHPIET 115

Query: 175 RGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARC 234
             V    D    LDE++              + + +E      GG       L  +   C
Sbjct: 116 ILVGA-ADRLMTLDEIK---------ALPDIACLLLELPQREIGGVAPAFSELETISRYC 165

Query: 235 QEHNIPVHMDGARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
           +E  I +H+DGARL           AE+    D++     KGLG   G+ILAGP  F Q 
Sbjct: 166 RERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPAAFCQT 225

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} Length = 359

 Score =  291 bits (748), Expect = 3e-98
 Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 29/228 (12%)

Query: 68  TVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTM 127
               R+  +    ++      +  +  D+Y      ++ + K AK+ GK++A+F PSGTM
Sbjct: 19  GNGPRNVGVLTEALQN----IDDNLESDIYGNGAVIEDFETKIAKILGKQSAVFFPSGTM 74

Query: 128 GNLIAIMTHCDRRD-SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFD 186
              IA+    DR++   +     SH+ + EQ G        ++ ++    +    +    
Sbjct: 75  AQQIALRIWADRKENRRVAYHPLSHLEIHEQDGL------KELQQITPLLLGT-ANQLLT 127

Query: 187 LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246
           +D++++             S V +E      GG +   + L ++   C E  I +H+DGA
Sbjct: 128 IDDIKS--------LREPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGA 179

Query: 247 RL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
           RL            E+CA  D+V     KG+G   G+ILAG ++F+Q+
Sbjct: 180 RLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIAGAILAGNDDFVQE 227

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 Length = 356

 Score =  230 bits (589), Expect = 2e-74
 Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 21/230 (9%)

Query: 69  VDIRSDTISKPTMEMKNYMFNCEVGD-DVYLEDPTCKELQEKAAKLAGKEAAIF-VPSGT 126
           +   SD I+  + E+   +     G    Y  D    +++ K  ++  ++  +F VP+GT
Sbjct: 10  LGFSSDNIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGT 69

Query: 127 MGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFD 186
             N + +          I     SHI   E G       +S   +++     +      D
Sbjct: 70  AANALCLSAMT-PPWGNIYCHPASHINNDECGAPE---FFSNGAKLM---TVDGPAAKLD 122

Query: 187 LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246
           +  +  +          +T   CV  T     G++  +  +  +   C+  ++ +HMDG+
Sbjct: 123 IVRLRERTR-EKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGS 181

Query: 247 RL---------PLAEV--CASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
           R            AE+   A VD + F  +K       +I+        +
Sbjct: 182 RFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATE 231

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 Length = 359

 Score =  222 bits (567), Expect = 4e-71
 Identities = 48/231 (20%), Positives = 80/231 (34%), Gaps = 25/231 (10%)

Query: 69  VDIRSDTISKPTMEMKNYMFNCEVGDDV-YLEDPTCKELQEKAAKLAGKEAA--IFVPSG 125
               +D       ++ + M    +     Y +D  C +      +L  +  A   F+  G
Sbjct: 16  YSFVNDYSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGG 75

Query: 126 TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTF 185
           T  NLIA      R    +I     HI   E G    T       +V+        DG  
Sbjct: 76  TQTNLIACSLAL-RPWEAVIATQLGHISTHETGAIEATG-----HKVV---TAPCPDGKL 126

Query: 186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDG 245
            + ++E+      + H     LV + NT     GT    Q L ++ A C+EH + + +DG
Sbjct: 127 RVADIESALHENRSEHMVIPKLVYISNTTEV--GTQYTKQELEDISASCKEHGLYLFLDG 184

Query: 246 ARL-----------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
           ARL            LA++    D      +K  G    +++   +     
Sbjct: 185 ARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPN 235

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* Length = 467

 Score =  214 bits (545), Expect = 1e-66
 Identities = 47/247 (19%), Positives = 82/247 (33%), Gaps = 37/247 (14%)

Query: 68  TVDIRSDTISKPTME-MKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGT 126
            +D+ +D+ +    + M+  M     GD+ Y    +   L E    + G +  I    G 
Sbjct: 43  FIDLLTDSGTGAVTQSMQAAMM---RGDEAYSGSRSYYALAESVKNIFGYQYTIPTHQGR 99

Query: 127 MGNLIAIMTHCDRRDSEIIVGDC-----SHIMLWEQGGASQ----TSVYSQIGRVLMRGV 177
               I I     +R+ E  +        S+       G SQ    T     I      GV
Sbjct: 100 GAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGV 159

Query: 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH 237
                G FDL+ +E      + +   +   +    T N  GG  + +  L+ + +  +++
Sbjct: 160 RYDFKGNFDLEGLERGI---EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKY 216

Query: 238 NIPVHMDGARL---------------------PLAEVCASVDTVMFCLSKGLGAPVGSIL 276
           +IPV MD AR                         E     D +     K    P+G +L
Sbjct: 217 DIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLL 276

Query: 277 AGPEEFI 283
              ++  
Sbjct: 277 CMKDDSF 283

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467

 Score =  149 bits (378), Expect = 3e-42
 Identities = 39/249 (15%), Positives = 77/249 (30%), Gaps = 37/249 (14%)

Query: 68  TVDIRSDTISKPTMEMKNYMFNC-EVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGT 126
            +D+ +D+    T  M ++ +     GD+ Y       +L++KA +L   +  I    G 
Sbjct: 45  YIDLLTDSG---TNAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKELFNYDYIIPAHQGR 101

Query: 127 MGNLIAIMTHCDRRDSEIIV--GDCSHIMLWEQGGASQ-----TSVYSQIGRVLMRGVTN 179
               I        +  E             ++   A        ++     +       +
Sbjct: 102 GAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYD 161

Query: 180 QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNI 239
              G FD+ +++            +   +    T N  GG  + M  L+E+    ++H I
Sbjct: 162 DWKGDFDIKKLKENI---AQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGI 218

Query: 240 PVHMDGARL---------------------PLAEVCASVDTVMFCLSKGLGAPVGSILA- 277
            V MD AR                       + ++    D +     K     +G ++A 
Sbjct: 219 FVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAI 278

Query: 278 -GPEEFIQK 285
              EE    
Sbjct: 279 RDNEEIFTL 287

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456

 Score =  137 bits (347), Expect = 8e-38
 Identities = 35/239 (14%), Positives = 73/239 (30%), Gaps = 31/239 (12%)

Query: 68  TVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTM 127
            +D+ +D+ +    + +       +GD+ Y        L+    +L G +  +    G  
Sbjct: 44  YIDLLTDSGTNAMSDKQ--WAGMMMGDEAYAGSENFYHLERTVQELFGFKHIVPTHQGRG 101

Query: 128 GNLIAIMTHCDRRDSEIIVGD--CSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTF 185
              +       +    +       +     E+ GA    V          G+     G  
Sbjct: 102 AENLLSQLAI-KPGQYVAGNMYFTTTRYHQEKNGA--VFVDIVRDEAHDAGLNIAFKGDI 158

Query: 186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDG 245
           DL +++      D     + + +C+  T N  GG  + M  +R ++   + H I V  D 
Sbjct: 159 DLKKLQKL---IDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDA 215

Query: 246 ARL---------------------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFI 283
            R                       + E+ +  D       K     +G  L   ++ +
Sbjct: 216 TRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDDEM 274

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score = 67.4 bits (165), Expect = 4e-13
 Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 30/208 (14%)

Query: 89  NCEVGDDVYLEDPTC-KELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVG 147
            C  G    ++ P     +  +  K  G + A             + +   +    +++ 
Sbjct: 41  FCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDA-WVVMD 99

Query: 148 DCSH---IMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCAS 204
           +  H    +  E+ G +   V            T+  D     +         +      
Sbjct: 100 ENCHYSSYVAAERAGLNIALVP----------KTDYPDYAITPENFAQTIE--ETKKRGE 147

Query: 205 TSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA----RLPLAEVCASVDTV 260
             L  +        G +     ++++   C E+++P+ ++GA    R+P++      D  
Sbjct: 148 VVLALITYPDGNY-GNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGAD-- 201

Query: 261 MFCLS--KGLGAP-VGSILAGPEEFIQK 285
               S  K + A     ++   EE+ + 
Sbjct: 202 FIVGSGHKSMAASGPIGVMGMKEEWAEI 229

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456

 Score = 49.3 bits (117), Expect = 5e-07
 Identities = 30/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)

Query: 98  LEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDS--EIIVGDCSHIMLW 155
           +   T K L+    +L     AI  P  T  ++   ++   ++     +I    SH    
Sbjct: 131 MYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASH---- 186

Query: 156 EQGGASQTSV-----YSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCV 210
                   S      +  +   L+  V +       ++++E        I   +   V +
Sbjct: 187 -------KSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAI--KKEIELGNRPCV-L 236

Query: 211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEVCA---------SVDTVM 261
                +          + E+   C+ ++IP  ++GA                   VD V+
Sbjct: 237 STLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVV 293

Query: 262 FCLSKGLGAPVGS 274
               K L  P+G 
Sbjct: 294 SSSDKNLLTPIGG 306

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* Length = 374

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 29/189 (15%), Positives = 59/189 (31%), Gaps = 34/189 (17%)

Query: 105 ELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTS 164
           E   K       +  +     +   L  I+    ++             L E  G     
Sbjct: 65  EYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKV---------IHYLPELPGHPSIE 115

Query: 165 VYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPM 224
              +I              +  + E+  K     +     T ++   +T +     V+ +
Sbjct: 116 RSCKIVNA---KYFE----SDKVGEILNKID--KD-----TLVIITGSTMDL---KVIEL 158

Query: 225 QWLRELKARCQEHNIPVHMD---GARLPLAE-----VCASVDTVMFCLSKGLGAPVGSIL 276
           +  +++    +     V +D   GAR+ L       +    D V+    K +  P G +L
Sbjct: 159 ENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLL 218

Query: 277 AGPEEFIQK 285
           AG +E + K
Sbjct: 219 AGKKELVDK 227

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} Length = 755

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 19/150 (12%)

Query: 104 KELQEKAAKLAGKEAAIFVPSG-TMGNLIAIMTHCDRRDSEIIVGDC--SHIMLWEQGGA 160
            E ++ AA++ G + +  V  G +  N   +       D  ++  +C  S        GA
Sbjct: 208 GESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGA 267

Query: 161 S------QTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH 214
                    + Y  IG +  + +  +      L +  ++     +      S   V N  
Sbjct: 268 KPVYMVPSRNRYGIIGPIYPQEMQPE-----TLQKKISESPLTKDKAGQKPSYCVVTNCT 322

Query: 215 NYCGGTVLPMQWLRELKARCQEHNIPVHMD 244
               G        +E +   ++ +  +H D
Sbjct: 323 YD--GVCYN---AKEAQDLLEKTSDRLHFD 347

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.95
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.94
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.93
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.93
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.93
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.92
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.92
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.91
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.91
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.91
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.91
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.91
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.91
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.91
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.91
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.91
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.91
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.91
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.91
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.91
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.9
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.9
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.9
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.9
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.9
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.9
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.9
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.9
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.9
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.9
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.9
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.9
1svv_A	359	Threonine aldolase; structural genomics, structura	99.9
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.9
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.9
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.9
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.9
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.9
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.9
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.9
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.9
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.9
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.9
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.9
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.9
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.89
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.89
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.89
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.89
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.89
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.89
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.89
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.89
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.89
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.89
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.89
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.89
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.89
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.89
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.89
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.89
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.89
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.89
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.89
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.89
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.89
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.89
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.89
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.89
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.89
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.89
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.89
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.89
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.89
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.89
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.88
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.88
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.88
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.88
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.88
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.88
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.88
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.88
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.88
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.88
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.88
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.88
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.88
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.88
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.88
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.88
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.88
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.88
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.88
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.88
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.88
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.88
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.88
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.88
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.88
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.87
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.87
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.87
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.87
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.87
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.87
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.87
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.87
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.87
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.87
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.87
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.87
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.87
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.87
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.87
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.87
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.87
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.87
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.87
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.87
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.87
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.87
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.86
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.86
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.86
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.86
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.86
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.86
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.86
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.86
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.86
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.86
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.86
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.86
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.86
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.86
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.85
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.85
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.85
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.85
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.85
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.85
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.85
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.85
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.85
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.85
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.85
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.85
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.85
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.85
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.85
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.85
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.85
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.85
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.85
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.75
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.85
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.85
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.85
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.85
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.84
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.84
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.84
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.84
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.84
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.84
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.84
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.84
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.84
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.84
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.84
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.84
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.84
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.84
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.83
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.83
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.83
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.83
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.83
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.83
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.83
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.83
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.83
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.83
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.82
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.82
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.82
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.82
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.82
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.82
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.82
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.82
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.82
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.82
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.82
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.82
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.82
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.82
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.82
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.82
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.81
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.7
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.81
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.81
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.81
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.81
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.81
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.81
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.81
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.81
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.8
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.8
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.8
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.79
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.79
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.79
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.78
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.76
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.75
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.75
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.74
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.72
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.69
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.69
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.67
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.66
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.66
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.64
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.63
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.62
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.62
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.62
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.59
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.55
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.54
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.4

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.95  E-value=1.1e-27  Score=212.01  Aligned_cols=210  Identities=48%  Similarity=0.790  Sum_probs=166.6

Q ss_pred             CeeeeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEE
Q psy5413          66 IRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEII  145 (285)
Q Consensus        66 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi  145 (285)
                      +.+++|.++....+++++++++.+...+...|++++...+|++.+++++|.+..++++||++|+.+++++++ ++||+|+
T Consensus         3 ~~~i~~~~~~~~~p~~~~~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~~-~~gd~Vl   81 (347)
T 1jg8_A            3 HMMIDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHT-QRGDEVI   81 (347)
T ss_dssp             --CEECSCGGGCCCCHHHHHHHHTCCCCCGGGTCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHC-CTTCEEE
T ss_pred             ceEEEeccccCCCCCHHHHHHHhcCCCCCcccCCChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHhc-CCCCEEE
Confidence            356899988878889999999987654445677788899999999999999989999999999999998876 6899999


Q ss_pred             ecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHH
Q psy5413         146 VGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQ  225 (285)
Q Consensus       146 ~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~  225 (285)
                      +++++|..++......      ...|.+++.+ ..+++.+|+++|+++|++.. .+.+++++|++++|+||+||.++|.+
T Consensus        82 ~~~~~~~~~~~~~~~~------~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~-~~~~~~~~v~~~~~~npt~G~~~~~~  153 (347)
T 1jg8_A           82 LEADSHIFWYEVGAMA------VLSGVMPHPV-PGKNGAMDPDDVRKAIRPRN-IHFPRTSLIAIENTHNRSGGRVVPLE  153 (347)
T ss_dssp             EETTCHHHHSSTTHHH------HHTCCEEEEE-CEETTEECHHHHHHHSCCSC-TTSCCEEEEEEESSBTTTTSBCCCHH
T ss_pred             EcCcchhhhccccchh------hccCeEEEEe-cCCCCccCHHHHHHHhcccc-ccccCceEEEEeccccccCCccCcHH
Confidence            9999987654322122      2347777777 43556689999999997510 01126899999999999989999999


Q ss_pred             HHHHHHHHHHHcCCeEEEeCccC---------ChhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         226 WLRELKARCQEHNIPVHMDGARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       226 ~l~~i~~la~~~gi~li~Dea~~---------~~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      ++++|+++|++||+++|+||+|.         ....+..++|.+++++||++++|.|+++++++++++
T Consensus       154 ~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~  221 (347)
T 1jg8_A          154 NIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIE  221 (347)
T ss_dssp             HHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCCceEEEEcCHHHHH
Confidence            99999999999999999999863         122233578988889999999988887877776653

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.94  E-value=1.6e-25  Score=198.42  Aligned_cols=208  Identities=19%  Similarity=0.309  Sum_probs=164.3

Q ss_pred             CeeeeeccCCcCCCcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcCCCc-EEEcCChHHHHHHHHHHccccCCCe
Q psy5413          66 IRTVDIRSDTISKPTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAGKEA-AIFVPSGTMGNLIAIMTHCDRRDSE  143 (285)
Q Consensus        66 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g~~~-~~~~~~Gs~a~~~al~~~~~~~g~~  143 (285)
                      +.++||.++++.+++|++++++.++..+ ...|+..+...++++.+++++|.+. +++++||++|++.++++++ ++|++
T Consensus         7 ~~~id~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~-~~gd~   85 (356)
T 1v72_A            7 PPALGFSSDNIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMT-PPWGN   85 (356)
T ss_dssp             CCCCBCSCGGGCCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSC-CTTEE
T ss_pred             CceEeeccCCccCCCHHHHHHHHhhccCcccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhc-CCCCE
Confidence            4678999998888999999999987654 3566667888999999999999655 5899999999999999987 58999


Q ss_pred             EEecCCcceeeeccccccccccccccc-ceeeeeeecCCCCCCCHHHHHH-HhcccccccCCceEEEEEecccCCCCeee
Q psy5413         144 IIVGDCSHIMLWEQGGASQTSVYSQIG-RVLMRGVTNQKDGTFDLDEMEA-KFSTADNIHCASTSLVCVENTHNYCGGTV  221 (285)
Q Consensus       144 vi~~~~~h~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~d~~~l~~-~i~~~~~~~~~~~~~v~i~~~~n~~gG~~  221 (285)
                      |+++.++|........+.      ... |.+++.++.+ ++.+|+++|++ ++++..+.++.++++|++++|+| + |.+
T Consensus        86 vi~~~~~~~~~~~~~~~~------~~~~g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-t-G~~  156 (356)
T 1v72_A           86 IYCHPASHINNDECGAPE------FFSNGAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-V-GSI  156 (356)
T ss_dssp             EEECTTSHHHHSSTTHHH------HHTTSCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-T-SCC
T ss_pred             EEEcCccchhhhhchHHH------HHhCCcEEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-C-Ccc
Confidence            999999887654421122      122 7788888763 46789999999 88752112334689999999886 6 899


Q ss_pred             CCHHHHHHHHHHHHHcCCeEEEeCccCC---------hhhh--cccCCeEEEecccccCccee-EEeecCccccc
Q psy5413         222 LPMQWLRELKARCQEHNIPVHMDGARLP---------LAEV--CASVDTVMFCLSKGLGAPVG-SILAGPEEFIQ  284 (285)
Q Consensus       222 ~~~~~l~~i~~la~~~gi~li~Dea~~~---------~~~~--~~~~dv~~~s~sK~l~~p~g-g~~~~~~~~i~  284 (285)
                      ++.+++++|+++|++||+++|+||+|..         ....  ..++|++++++||+ ++|.| |++++++++++
T Consensus       157 ~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~~~~~~~~~  230 (356)
T 1v72_A          157 YTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAIVLFNTSLAT  230 (356)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEEEESSGGGHH
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEEEEECHHHHh
Confidence            9999999999999999999999999861         1111  13688999999999 66888 68888887754

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.93  E-value=1.1e-25  Score=205.65  Aligned_cols=224  Identities=14%  Similarity=0.138  Sum_probs=161.3

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC-CccCChhHHH
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD-VYLEDPTCKE  105 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~-~y~~~~~~~~  105 (285)
                      |..+.++.+.++|+..++.+++.+..|+..                  +.++.||+|.+|+.+++.... .....+...+
T Consensus        70 P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGH~hp~v~~Av~~q~~~~~~~~~~~~~~~~  131 (454)
T 4ao9_A           70 PLTIARGEGAALWDADGHRYADFIAEYTAG------------------VYGHSAPEIRDAVIEAMQGGINLTGHNLLEGR  131 (454)
T ss_dssp             CCEEEEEETTEEEETTCCEEEESSGGGGTT------------------TTCSCCHHHHHHHHHHHHTCSCCCSEESSHHH
T ss_pred             CccEEEeecCEEEECCCCEEEEccccHHhh------------------cccCCCHHHHHHHHHHHhcCCCccCCcHHHHH
Confidence            566667777777776666666655555543                  237799999999998876533 2234566789


Q ss_pred             HHHHHHhHc-CCCcEEEcCChHHHHHHHHHHccccCCCe-EE-ecCCcceeeecccccccccccccccc--eeeeeeecC
Q psy5413         106 LQEKAAKLA-GKEAAIFVPSGTMGNLIAIMTHCDRRDSE-II-VGDCSHIMLWEQGGASQTSVYSQIGR--VLMRGVTNQ  180 (285)
Q Consensus       106 l~~~la~~~-g~~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi-~~~~~h~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~  180 (285)
                      +++.|++++ +.+.++|++|||+|++.|++++...+|+. |+ ....||+.+...+...      ....  .....+|. 
T Consensus       132 lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~------~~~~~~~~~~~~p~-  204 (454)
T 4ao9_A          132 LARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARP------SPTTVPFDFLVLPY-  204 (454)
T ss_dssp             HHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSB------CTTSCCSEEEEECT-
T ss_pred             HHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccc------cCccCCCCcccCCC-
Confidence            999999987 56778999999999999999987656653 33 3678888765443332      1111  12222332 


Q ss_pred             CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC---hhhhcccC
Q psy5413         181 KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP---LAEVCASV  257 (285)
Q Consensus       181 ~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~---~~~~~~~~  257 (285)
                          .|++.+++.+++    +++++++|++|++++..|....++++|++|+++|++||++||+||++++   .....+++
T Consensus       205 ----nd~~~l~~~l~~----~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tGR~G~~~a~e~~  276 (454)
T 4ao9_A          205 ----NDAQTARAQIER----HGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTSRLAPHGLANKL  276 (454)
T ss_dssp             ----TCHHHHHHHHHH----TGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGGGGSTTCHHHHH
T ss_pred             ----chHHHHHHHHhh----cCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcCCCccccchhcc
Confidence                389999999987    4558999999999999877788899999999999999999999999873   33333444


Q ss_pred             CeE--EEecccccCc--ceeEEeecCccccc
Q psy5413         258 DTV--MFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       258 dv~--~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      ++.  +.+++|.+++  |+|+++ +++++++
T Consensus       277 gv~PDi~t~gK~lggG~Piga~~-~~~ei~~  306 (454)
T 4ao9_A          277 GIRSDLTTLGKYIGGGMSFGAFG-GRADVMA  306 (454)
T ss_dssp             TCCCSEEEEEGGGGTTSSCEEEE-ECHHHHG
T ss_pred             CCCCcEEEeccccCCCCcceeee-eHHHHHH
Confidence            444  5677799987  877655 4455543

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.93  E-value=2.4e-26  Score=204.28  Aligned_cols=196  Identities=28%  Similarity=0.467  Sum_probs=157.1

Q ss_pred             ccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCe--EEecCC
Q psy5413          72 RSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSE--IIVGDC  149 (285)
Q Consensus        72 ~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~--vi~~~~  149 (285)
                      .+.++.+++|++.+++.+.. +...|+.++...++++.+++++|.+..++++||++|+..++++++ .+|++  |++++.
T Consensus        20 ~~~~~~g~~p~v~~ai~~~~-~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~-~~g~~~vvi~~~~   97 (359)
T 3pj0_A           20 NGPRNVGVLTEALQNIDDNL-ESDIYGNGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWA-DRKENRRVAYHPL   97 (359)
T ss_dssp             SSCCBHHHHHHHTTTSCTTC-BCCBTTBSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHH-HHHTCCEEEECTT
T ss_pred             CCccccCCCHHHHHHHHhhc-ccCcccCCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHH-hcCCCcEEEEecc
Confidence            34455557889999888743 345677788899999999999999888888999999999999987 46665  566777


Q ss_pred             cceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHH
Q psy5413         150 SHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRE  229 (285)
Q Consensus       150 ~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~  229 (285)
                      +|.+........      ...|.+++.++. +++.+|+++|+++ .+       ++++|++++|+|++||.+++.+++++
T Consensus        98 ~~~~~~~~~~~~------~~~g~~~~~v~~-~~~~~d~~~l~~~-~~-------~~~~v~~~~p~n~~~G~~~~~~~l~~  162 (359)
T 3pj0_A           98 SHLEIHEQDGLK------ELQQITPLLLGT-ANQLLTIDDIKSL-RE-------PVSSVLIELPQREIGGQLPAFEELEK  162 (359)
T ss_dssp             CHHHHSSTTHHH------HHHCCEEEECSC-TTSCCCHHHHHTC-SS-------CCSEEEEESSBGGGTSBCCCHHHHHH
T ss_pred             ceeeehhcchHH------HhcCceEEecCC-cCCCcCHHHHHhc-cC-------CceEEEEEecccCCCcccCCHHHHHH
Confidence            776554433332      234788888887 5678999999988 44       78999999999998889999999999


Q ss_pred             HHHHHHHcCCeEEEeCccC---------ChhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         230 LKARCQEHNIPVHMDGARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       230 i~~la~~~gi~li~Dea~~---------~~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      |+++|++||++||+|++|.         ....+...+|+++.|+||++++|.||++++++++++
T Consensus       163 l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~~~l~~  226 (359)
T 3pj0_A          163 ISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIAGAILAGNDDFVQ  226 (359)
T ss_dssp             HHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSSCEEEEECHHHHH
T ss_pred             HHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcceEEEECCHHHHH
Confidence            9999999999999999975         122233577999999999999988889888887764

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.93  E-value=5.6e-26  Score=201.89  Aligned_cols=174  Identities=30%  Similarity=0.479  Sum_probs=142.2

Q ss_pred             CCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCC--eEEecCCcceeeecccccccccccccccc
Q psy5413          94 DDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDS--EIIVGDCSHIMLWEQGGASQTSVYSQIGR  171 (285)
Q Consensus        94 ~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~--~vi~~~~~h~~~~~~~~~~~~~~~~~~~g  171 (285)
                      ...|+.++...+|++.+++++|.+..+++++|++|+..++++++. +|+  .|++++.+|.+........      ...|
T Consensus        40 ~~~y~~~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~~~~-~gd~~~vi~~~~~~~~~~~~~~~~------~~~g  112 (357)
T 3lws_A           40 SDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSD-ETDNRTVAYHPLCHLEIHEQDGLK------ELHP  112 (357)
T ss_dssp             CEETTEETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHH-HHTCCEEEECTTCHHHHSSTTHHH------HHSS
T ss_pred             cccccCChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHhh-cCCCcEEEecccceeeeeccchhh------hccC
Confidence            356777788999999999999998888889999999999998874 666  6777888886655432222      2347


Q ss_pred             eeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC---
Q psy5413         172 VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL---  248 (285)
Q Consensus       172 ~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~---  248 (285)
                      .+++.++. +++.+|+++|+++  .       ++++|++++|+||+||.+++.+++++|+++|++||++||+||+|.   
T Consensus       113 ~~~~~v~~-~~~~~d~~~l~~~--~-------~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~  182 (357)
T 3lws_A          113 IETILVGA-ADRLMTLDEIKAL--P-------DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEM  182 (357)
T ss_dssp             CEEEECSC-TTSCCCHHHHHTC--C-------SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHH
T ss_pred             cEEEEecC-CCCCcCHHHHhcC--c-------CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhh
Confidence            88888875 5667999999887  2       478999999999988999999999999999999999999999975   


Q ss_pred             ------ChhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         249 ------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       249 ------~~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                            +...+...+|+++.|+||++++|.||++++++++++
T Consensus       183 ~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~~~~~~  224 (357)
T 3lws_A          183 LPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPAAFCQ  224 (357)
T ss_dssp             HHHHTCCHHHHHTTSSEEEEESSSTTCCSSCEEEEECHHHHH
T ss_pred             hhhcCCChHHHHhcCCEEEEeccccCCCCceEEEEcCHHHHH
Confidence                  222333568999999999998888899999887764

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.92  E-value=2.4e-24  Score=191.02  Aligned_cols=203  Identities=14%  Similarity=0.087  Sum_probs=160.0

Q ss_pred             cCCeeeeeccCCcC-CCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCC--CcEEEcCChHHHHHHHHHHccccC
Q psy5413          64 VNIRTVDIRSDTIS-KPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGK--EAAIFVPSGTMGNLIAIMTHCDRR  140 (285)
Q Consensus        64 ~~~~~~~~~~~~~~-~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~--~~~~~~~~Gs~a~~~al~~~~~~~  140 (285)
                      .++++++|.++... .++|++.+++.+.......| +.+...++++.++++++.  +.+++++||++|+..++++++ ++
T Consensus        14 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y-~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~   91 (354)
T 3ly1_A           14 STDNPIRINFNENPLGMSPKAQAAARDAVVKANRY-AKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYA-SL   91 (354)
T ss_dssp             CSSSCEECSSCCCSSCCCHHHHHHHHHTGGGTTSC-CHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHC-CT
T ss_pred             CCCceEEccCCCCCCCCCHHHHHHHHHHHhhCcCC-CCCchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHh-CC
Confidence            36788999876444 47889999999877655556 356789999999999985  457999999999999999986 68


Q ss_pred             CCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCee
Q psy5413         141 DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT  220 (285)
Q Consensus       141 g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~  220 (285)
                      |++|+++.++|.......         ...|.+++.++.++++.+|+++|+++++++     +++++|++++|+||+ |.
T Consensus        92 gd~vl~~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~-----~~~~~v~l~~p~npt-G~  156 (354)
T 3ly1_A           92 EAQLVIPELTYGDGEHFA---------KIAGMKVTKVKMLDNWAFDIEGLKAAVAAY-----SGPSIVYLVNPNNPT-GT  156 (354)
T ss_dssp             TCEEEEESSSCTHHHHHH---------HHTTCEEEEECCCTTSCCCHHHHHHHHHTC-----SSCEEEEEESSCTTT-CC
T ss_pred             CCeEEECCCCchHHHHHH---------HHcCCEEEEecCCCCCCCCHHHHHHHhccC-----CCCCEEEEeCCCCCc-CC
Confidence            999999888876543322         244888999988767889999999999830     178999999999999 99


Q ss_pred             eCCHHHHHHHHHHHHHcCCeEEEeCccCCh---------hhhcc---cCCeEEEecccccCc--ceeEEeecCccccc
Q psy5413         221 VLPMQWLRELKARCQEHNIPVHMDGARLPL---------AEVCA---SVDTVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       221 ~~~~~~l~~i~~la~~~gi~li~Dea~~~~---------~~~~~---~~dv~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      ++|.+++++|+++| +||+++|+||+|..+         .....   ..++++.|+||+++.  .+.|+++.++++++
T Consensus       157 ~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~  233 (354)
T 3ly1_A          157 ITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIA  233 (354)
T ss_dssp             CCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHH
T ss_pred             CcCHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHH
Confidence            99988888888888 799999999998722         11111   333669999999973  56678888777653

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.92  E-value=3.5e-24  Score=193.98  Aligned_cols=195  Identities=15%  Similarity=0.206  Sum_probs=156.7

Q ss_pred             cCCeeeeeccCCcCC--CcHHHHHHHHhcccCC--------CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHH
Q psy5413          64 VNIRTVDIRSDTISK--PTMEMKNYMFNCEVGD--------DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        64 ~~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~~--------~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al  133 (285)
                      .|++++||.++++..  ++|++.+++.+++...        ..++..+...++++.+++++|.+..+++++|++|+..++
T Consensus        57 ~g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~l  136 (409)
T 3kki_A           57 ASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLL  136 (409)
T ss_dssp             CCTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEEEESCHHHHHHHHH
T ss_pred             CCCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEEEecchHHHHHHHH
Confidence            378899998876543  6889999988776531        123344567889999999999998999999999999999


Q ss_pred             HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      ++++ ++||.|++++++|..+......         .|.+++.++.     .|+++|++++++.      ++++|+++++
T Consensus       137 ~~~~-~~gd~Vl~~~~~~~~~~~~~~~---------~g~~~~~~~~-----~d~~~le~~l~~~------~~~~vi~~~~  195 (409)
T 3kki_A          137 QTIC-QPNTNVYIDFFAHMSLWEGARY---------ANAQAHPFMH-----NNCDHLRMLIQRH------GPGIIVVDSI  195 (409)
T ss_dssp             HHHC-CTTCEEEEETTSCHHHHHHHHH---------TTCEEEEECT-----TCHHHHHHHHHHH------CSCEEEEESB
T ss_pred             HHhc-CCCCEEEECCCcCHHHHHHHHH---------cCCeEEEecC-----CCHHHHHHHHHhc------CCeEEEECCC
Confidence            9887 6999999999998766543222         3777776654     5899999999862      4799999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC--h-------h---hhcccCCeEEEecccccCcceeEEeecCcc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP--L-------A---EVCASVDTVMFCLSKGLGAPVGSILAGPEE  281 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~--~-------~---~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~  281 (285)
                      +|++ |.+.|   +++|+++|++||++||+||+|+.  +       .   ......|+++.|+||+++++ ||+++++++
T Consensus       196 ~npt-G~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~-gg~v~~~~~  270 (409)
T 3kki_A          196 YSTL-GTIAP---LAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR-AGAIWCNNE  270 (409)
T ss_dssp             CTTT-CCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS-CEEEEESSS
T ss_pred             CCCC-CCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC-ceEEEECHH
Confidence            9999 89999   99999999999999999999872  1       1   11235788899999999987 888988888


Q ss_pred             ccc
Q psy5413         282 FIQ  284 (285)
Q Consensus       282 ~i~  284 (285)
                      +++
T Consensus       271 ~~~  273 (409)
T 3kki_A          271 VNR  273 (409)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            765

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.91  E-value=9.2e-24  Score=192.52  Aligned_cols=198  Identities=17%  Similarity=0.192  Sum_probs=157.4

Q ss_pred             cCCeeeeeccCCc-C-CCcHHHHHHHHhcccC-C---C----CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHH
Q psy5413          64 VNIRTVDIRSDTI-S-KPTMEMKNYMFNCEVG-D---D----VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        64 ~~~~~~~~~~~~~-~-~~~~~v~~a~~~~~~~-~---~----~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al  133 (285)
                      .|++++||.++++ + .++|++.+++.++... .   .    .++..+...++++.+++++|.+..+++++|++|+..++
T Consensus        62 ~g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al  141 (427)
T 2w8t_A           62 RGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGII  141 (427)
T ss_dssp             TTEEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHH
T ss_pred             CCceEEEEECcccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHH
Confidence            4688999998875 4 3788999998876542 1   1    22345778999999999999998899999999999999


Q ss_pred             HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      +++. ++|+.|+++.++|.++.....         ..|.+++.++.     .|+++|++++++..+   .++++|+++++
T Consensus       142 ~~l~-~~gd~vl~~~~~h~~~~~~~~---------~~g~~~~~~~~-----~d~~~le~~l~~~~~---~~~~~v~~~~~  203 (427)
T 2w8t_A          142 STLA-GKGEYVILDADSHASIYDGCQ---------QGNAEIVRFRH-----NSVEDLDKRLGRLPK---EPAKLVVLEGV  203 (427)
T ss_dssp             HHHS-CTTCEEEEETTCCHHHHHHHH---------HSCSEEEEECT-----TCHHHHHHHHHTSCS---SSCEEEEEESE
T ss_pred             HHhc-CCCCEEEECCcccHHHHHHHH---------HcCCeeEEeCC-----CCHHHHHHHHHhccC---CCCeEEEEcCC
Confidence            9876 689999999999876654322         23777777763     599999999976211   26899999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-h-----------hhcccCCeEEEecccccCcceeEEeecCcc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-A-----------EVCASVDTVMFCLSKGLGAPVGSILAGPEE  281 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-~-----------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~  281 (285)
                      +|++ |.+.|   +++|+++|++||+++|+||+|+.. .           .+..+.|+++.|+||+++. .||+++++++
T Consensus       204 ~n~t-G~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~-~gG~v~~~~~  278 (427)
T 2w8t_A          204 YSML-GDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGT-VGGFVVSNHP  278 (427)
T ss_dssp             ETTT-TEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCS-CCEEEEECCT
T ss_pred             CCCC-CCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhcc-CCCEEEeCHH
Confidence            9999 89999   999999999999999999998821 1           1123568889999999984 6788888888


Q ss_pred             ccc
Q psy5413         282 FIQ  284 (285)
Q Consensus       282 ~i~  284 (285)
                      +++
T Consensus       279 l~~  281 (427)
T 2w8t_A          279 KFE  281 (427)
T ss_dssp             TGG
T ss_pred             HHH
Confidence            765

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.91  E-value=5.1e-24  Score=189.82  Aligned_cols=202  Identities=13%  Similarity=0.185  Sum_probs=152.6

Q ss_pred             eeeeecc-CCcCCCcHHHHHHHHhcccCC----------CCccCChhHHHHHHH-HHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413          67 RTVDIRS-DTISKPTMEMKNYMFNCEVGD----------DVYLEDPTCKELQEK-AAKLAGKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        67 ~~~~~~~-~~~~~~~~~v~~a~~~~~~~~----------~~y~~~~~~~~l~~~-la~~~g~~~~~~~~~Gs~a~~~al~  134 (285)
                      .+++|.. .....+++++.+++.+.....          ..+...+...++++. +++++|.+.+++++||++|+..+++
T Consensus         8 ~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~~v~~~~g~t~a~~~~~~   87 (371)
T 2e7j_A            8 DFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMH   87 (371)
T ss_dssp             CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHH
T ss_pred             CcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHH
Confidence            3455555 334557889999998876532          123356778999999 9999998866888889999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeee--cCCCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT--NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      +++ ++|++|+++.++|.......         ...|.+++.++  .++++.+|+++|++++++... + +++++|++++
T Consensus        88 ~~~-~~gd~vl~~~~~~~~~~~~~---------~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~-~-~~~~~v~~~~  155 (371)
T 2e7j_A           88 SLA-KKDAWVVMDENCHYSSYVAA---------ERAGLNIALVPKTDYPDYAITPENFAQTIEETKK-R-GEVVLALITY  155 (371)
T ss_dssp             HHC-CTTCEEEEETTCCHHHHHHH---------HHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTT-T-SCEEEEEEES
T ss_pred             HHh-CCCCEEEEccCcchHHHHHH---------HHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcc-c-CCeEEEEEEC
Confidence            986 58999999988876554432         24488888888  666678999999999974210 0 2789999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----hhhcccCCeEEEecccccCc-ceeEEeecCccccc
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----AEVCASVDTVMFCLSKGLGA-PVGSILAGPEEFIQ  284 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----~~~~~~~dv~~~s~sK~l~~-p~gg~~~~~~~~i~  284 (285)
                      ++||+ |.++|   +++|+++|++||+++|+||+|+..    .....+.|+++.|+||++++ ..+|+++.++++++
T Consensus       156 ~~npt-G~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~~~  228 (371)
T 2e7j_A          156 PDGNY-GNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAE  228 (371)
T ss_dssp             SCTTT-CCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTT
T ss_pred             CCCCC-cccCC---HHHHHHHHHHcCCeEEEECccccCCCCCChhhcCCCEEEecCCcCCCCCCCcEEEEEechhhh
Confidence            99999 89999   899999999999999999998821    11123678999999999887 45578888777654

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.91  E-value=7.1e-24  Score=191.82  Aligned_cols=202  Identities=16%  Similarity=0.139  Sum_probs=157.8

Q ss_pred             CCeeeeeccCCcCCCcHHHHHHHHhcccC--------CCCccC--ChhHHHHHHHHHhHcCC---CcEEEcCChHHHHHH
Q psy5413          65 NIRTVDIRSDTISKPTMEMKNYMFNCEVG--------DDVYLE--DPTCKELQEKAAKLAGK---EAAIFVPSGTMGNLI  131 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~--------~~~y~~--~~~~~~l~~~la~~~g~---~~~~~~~~Gs~a~~~  131 (285)
                      |+.+++|.++.+...++++.+++.+....        ...|+.  .+...++++.++++++.   +.+++++||++|+..
T Consensus        26 g~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~  105 (420)
T 1t3i_A           26 GHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINL  105 (420)
T ss_dssp             TEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHH
T ss_pred             CCceEEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHH
Confidence            45678999888887788999998876542        122332  35688999999999998   568999999999999


Q ss_pred             HHHHc----cccCCCeEEecCCcceeeec-ccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceE
Q psy5413         132 AIMTH----CDRRDSEIIVGDCSHIMLWE-QGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       132 al~~~----~~~~g~~vi~~~~~h~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                      +++++    + ++|++|+++.+.|..... .....      ...|.+++.++.++++.+|+++|++++++       +++
T Consensus       106 ~~~~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~~------~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-------~~~  171 (420)
T 1t3i_A          106 VAYSWGMNNL-KAGDEIITTVMEHHSNLVPWQMVA------AKTGAVLKFVQLDEQESFDLEHFKTLLSE-------KTK  171 (420)
T ss_dssp             HHHHTHHHHC-CTTCEEEEETTCCGGGTHHHHHHH------HHHCCEEEEECBCTTSSBCHHHHHHHCCT-------TEE
T ss_pred             HHHHhhhccc-CCCCEEEECcchhHHHHHHHHHHH------HhcCcEEEEeccCCCCCcCHHHHHHhhCC-------Cce
Confidence            99998    5 589999998887755311 01111      23477888888877777999999999987       799


Q ss_pred             EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----hhhcccCCeEEEecccccCcceeEEeecCccc
Q psy5413         207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----AEVCASVDTVMFCLSKGLGAPVGSILAGPEEF  282 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~  282 (285)
                      +|++++++|++ |.++|   +++|+++|++||+++|+||+|+..    .....+.|+++.|+||.++++.+|+++.++++
T Consensus       172 ~v~~~~~~npt-G~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~G~~~~~~~~  247 (420)
T 1t3i_A          172 LVTVVHISNTL-GCVNP---AEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEI  247 (420)
T ss_dssp             EEEEESBCTTT-CBBCC---HHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHH
T ss_pred             EEEEeCCcccc-cCcCC---HHHHHHHHHHcCCEEEEEhhhccCCccCchhhcCCCEEEEehhhhcCCCceEEEEEchHH
Confidence            99999999999 99999   999999999999999999998821    11123579999999997765445788877766


Q ss_pred             cc
Q psy5413         283 IQ  284 (285)
Q Consensus       283 i~  284 (285)
                      ++
T Consensus       248 ~~  249 (420)
T 1t3i_A          248 LE  249 (420)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.91  E-value=9e-24  Score=190.09  Aligned_cols=202  Identities=16%  Similarity=0.080  Sum_probs=157.8

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----CC----CcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----GK----EAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g~----~~~~~~~~Gs~a~~~al~  134 (285)
                      |+.+++|.++.+.. .++.+.+++.+.... ...|...+...++++.+++++    |.    +.+++++||++|+..+++
T Consensus        40 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~  119 (389)
T 1o4s_A           40 GEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFM  119 (389)
T ss_dssp             TCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHH
T ss_pred             CCCEEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHH
Confidence            56789998877653 567899998877653 345665556788999999987    53    457999999999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      +++ ++|++|++++++|.......         ...|.+++.++.++  ++.+|+++|++++++       ++++|++++
T Consensus       120 ~l~-~~gd~Vl~~~~~~~~~~~~~---------~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-------~~~~v~~~~  182 (389)
T 1o4s_A          120 ALL-DPGDEVIVFSPVWVSYIPQI---------ILAGGTVNVVETFMSKNFQPSLEEVEGLLVG-------KTKAVLINS  182 (389)
T ss_dssp             HHC-CTTCEEEEEESCCTTHHHHH---------HHTTCEEEEEECCGGGTTCCCHHHHHHTCCT-------TEEEEEEES
T ss_pred             HhC-CCCCEEEEcCCCchhHHHHH---------HHcCCEEEEEecCCccCCCCCHHHHHHhccc-------CceEEEEcC
Confidence            986 58999999887775543321         23478888888753  456899999999977       789999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---------hhhc--ccCCeEEEecccccCc--ceeEEeecC
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---------AEVC--ASVDTVMFCLSKGLGA--PVGSILAGP  279 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---------~~~~--~~~dv~~~s~sK~l~~--p~gg~~~~~  279 (285)
                      |+||+ |.++|.+++++|+++|++||+++|+||+|+.+         ..+.  .+.|+++.|+||+++.  .+.|+++.+
T Consensus       183 p~npt-G~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~  261 (389)
T 1o4s_A          183 PNNPT-GVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISS  261 (389)
T ss_dssp             SCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECC
T ss_pred             CCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeC
Confidence            99999 89999999999999999999999999998722         1121  2457789999999974  456888888


Q ss_pred             ccccc
Q psy5413         280 EEFIQ  284 (285)
Q Consensus       280 ~~~i~  284 (285)
                      +++++
T Consensus       262 ~~~~~  266 (389)
T 1o4s_A          262 EKVAT  266 (389)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77653

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.91  E-value=2.7e-24  Score=197.85  Aligned_cols=204  Identities=19%  Similarity=0.257  Sum_probs=151.5

Q ss_pred             CCeeeeeccCCcCCCcHHHHHHHHhccc-CCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcccc---C
Q psy5413          65 NIRTVDIRSDTISKPTMEMKNYMFNCEV-GDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDR---R  140 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~-~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~---~  140 (285)
                      |+.++||.++.+.   +.+.+++.+.+. +...|+..+...++++.++++++.+.+++++||++|++.++++++..   +
T Consensus        42 g~~ylD~~~~~~~---~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~~~~~~~~  118 (467)
T 1ax4_A           42 SAVYIDLLTDSGT---NAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKE  118 (467)
T ss_dssp             GGCSEECSCSSSC---CCEEHHHHHHHHTCCCCSSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred             CceeeecccCcCC---HHHHHHHHHHHhhcccccccCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHHHHhhccC
Confidence            5678999777654   666666655533 34467777889999999999999999999999999999999998732   8


Q ss_pred             CCe---EEecCCcceeeecccccccccccccccceeeeeeecC----------CCCCCCHHHHHHHhcccccccCCceEE
Q psy5413         141 DSE---IIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ----------KDGTFDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       141 g~~---vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~~~~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                      ||+   |+++ .+|..... ..+       ...|..++.++..          .++.+|+++|+++|+++.   .+++++
T Consensus       119 Gd~~~~viv~-~~~~~~~~-~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~---~~~~~~  186 (467)
T 1ax4_A          119 GKAKNPVFIS-NFHFDTTA-AHV-------ELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG---ADNIVA  186 (467)
T ss_dssp             TCCSSCEEEE-SSCCHHHH-HHH-------HHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC---GGGEEE
T ss_pred             CCccceEEEe-ccccchhh-HHH-------hccCCceecccccccccccccCCcccccCHHHHHHHHHhcC---CCCeeE
Confidence            998   8887 55522211 011       1224444433211          235689999999997521   126899


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC-----------------hhhhc----ccCCeEEEeccc
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP-----------------LAEVC----ASVDTVMFCLSK  266 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~-----------------~~~~~----~~~dv~~~s~sK  266 (285)
                      |++++++|++||.+++.+++++|+++|++||++||+||+|..                 +..+.    ..+|++++|+||
T Consensus       187 vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK  266 (467)
T 1ax4_A          187 IVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKK  266 (467)
T ss_dssp             EEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTS
T ss_pred             EEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccc
Confidence            999999999989999999999999999999999999998542                 11111    357888999999


Q ss_pred             ccCcceeEEeecC-c-ccc
Q psy5413         267 GLGAPVGSILAGP-E-EFI  283 (285)
Q Consensus       267 ~l~~p~gg~~~~~-~-~~i  283 (285)
                      +++.|.||+++++ + +++
T Consensus       267 ~~g~~~Gg~~~~~d~~~l~  285 (467)
T 1ax4_A          267 DPLLNIGGLVAIRDNEEIF  285 (467)
T ss_dssp             TTCCSSCEEEEESSCHHHH
T ss_pred             cCCCCcceEEEeCCHHHHH
Confidence            9988888888876 6 654

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.91  E-value=5.8e-24  Score=191.24  Aligned_cols=200  Identities=18%  Similarity=0.196  Sum_probs=157.5

Q ss_pred             CCeeeeeccCCcCC--CcHHHHHHHHhcccC------CC--CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK--PTMEMKNYMFNCEVG------DD--VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~------~~--~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~  134 (285)
                      |++++||.++++.+  ++|++.+++.+....      ..  .++..+...++++.+++++|.+..+++++|++|+..+++
T Consensus        42 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~l~  121 (399)
T 3tqx_A           42 EKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFE  121 (399)
T ss_dssp             TEEEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHH
T ss_pred             CeeEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCCCcEEEECchHHHHHHHHH
Confidence            67889999887643  688999998766542      11  234567789999999999999988999999999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      +++ ++|+.|+++.++|..+.....         ..|.+++.++.     .|++++++++++... .+.++++|++++++
T Consensus       122 ~~~-~~gd~v~~~~~~~~~~~~~~~---------~~g~~~~~~~~-----~d~~~l~~~l~~~~~-~~~~~~~v~~~~~~  185 (399)
T 3tqx_A          122 TLL-GPEDAIISDELNHASIIDGIR---------LCKAQRYRYKN-----NAMGDLEAKLKEADE-KGARFKLIATDGVF  185 (399)
T ss_dssp             HHC-CTTCEEEEETTCCHHHHHHHH---------SCCSEEEEECT-----TCTTHHHHHHHHHHT-TTCSSEEEEEESEE
T ss_pred             Hhc-CCCCEEEECCcccHHHHHHHH---------HcCCceeEeCC-----CCHHHHHHHHHhhhc-cCCCceEEEEeCCC
Confidence            877 689999999999877654322         33777777775     377889988876211 12268999999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Ch--------hhh---cccCCeEEEecccccCcceeEEeecCccc
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PL--------AEV---CASVDTVMFCLSKGLGAPVGSILAGPEEF  282 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~--------~~~---~~~~dv~~~s~sK~l~~p~gg~~~~~~~~  282 (285)
                      ||+ |.++|   +++|+++|++||+++|+||+|. +.        ...   ....|+++.|+||+++|+.||++++++++
T Consensus       186 npt-G~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gG~~~~~~~~  261 (399)
T 3tqx_A          186 SMD-GIIAD---LKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASGGYTSGHKEI  261 (399)
T ss_dssp             TTT-TEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCCEEEEECHHH
T ss_pred             CCC-CCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCceEEEEcCHHH
Confidence            999 89999   9999999999999999999985 22        111   12568889999999997778999988876


Q ss_pred             cc
Q psy5413         283 IQ  284 (285)
Q Consensus       283 i~  284 (285)
                      ++
T Consensus       262 ~~  263 (399)
T 3tqx_A          262 IE  263 (399)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.91  E-value=7.8e-24  Score=189.74  Aligned_cols=200  Identities=16%  Similarity=0.136  Sum_probs=157.9

Q ss_pred             eeeeeccCCcCC-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCCe
Q psy5413          67 RTVDIRSDTISK-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDSE  143 (285)
Q Consensus        67 ~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~~  143 (285)
                      .+++|..+.+.. +++.+.+++.++......|.......++++.++++++.+  .+++++||++|+..++++++ .+|++
T Consensus        26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~  104 (381)
T 1v2d_A           26 GAVNLGQGFPSNPPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV-GPGDE  104 (381)
T ss_dssp             TCEECCCCSCSSCCCHHHHHHHHHHTTTSCSCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC-CTTCE
T ss_pred             CeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC-CCCCE
Confidence            368888766654 678999999877654345665556889999999999874  57999999999999999986 58999


Q ss_pred             EEecCCcceeeecccccccccccccccceeeeeeecC---CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCee
Q psy5413         144 IIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ---KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT  220 (285)
Q Consensus       144 vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~  220 (285)
                      |++++++|......   .      ...|.+++.++.+   +++.+|+++|++++++       ++++|++++|+||+ |.
T Consensus       105 Vl~~~~~~~~~~~~---~------~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-------~~~~v~~~~~~npt-G~  167 (381)
T 1v2d_A          105 VVVLEPFFDVYLPD---A------FLAGAKARLVRLDLTPEGFRLDLSALEKALTP-------RTRALLLNTPMNPT-GL  167 (381)
T ss_dssp             EEEEESCCTTHHHH---H------HHTTCEEEEEECEEETTEEECCHHHHHTTCCT-------TEEEEEEESSCTTT-CC
T ss_pred             EEEcCCCchhHHHH---H------HHcCCEEEEEeCCCCCccCCcCHHHHHHhcCc-------CCEEEEECCCCCCC-CC
Confidence            99988777554331   1      2347788888764   4466899999999976       78999999999999 89


Q ss_pred             eCCHHHHHHHHHHHHHcCCeEEEeCccCChh------hh---cccCCeEEEecccccCc--ceeEEeecCccccc
Q psy5413         221 VLPMQWLRELKARCQEHNIPVHMDGARLPLA------EV---CASVDTVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       221 ~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~---~~~~dv~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      ++|.+++++|+++|++||+++|+||+|+.+.      .+   ..+.|+++.|+||+++.  .+.|+++.++++++
T Consensus       168 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~  242 (381)
T 1v2d_A          168 VFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMP  242 (381)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHH
T ss_pred             ccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHHHHH
Confidence            9999999999999999999999999987321      11   23567789999999874  45678888877654

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.91  E-value=1.2e-23  Score=189.40  Aligned_cols=200  Identities=15%  Similarity=0.079  Sum_probs=155.1

Q ss_pred             CeeeeeccCCcCC-CcHHHHHHHHhcccC-----CCCccCChhHHHHHHHHHhHc----C----CCcEEEcCChHHHHHH
Q psy5413          66 IRTVDIRSDTISK-PTMEMKNYMFNCEVG-----DDVYLEDPTCKELQEKAAKLA----G----KEAAIFVPSGTMGNLI  131 (285)
Q Consensus        66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-----~~~y~~~~~~~~l~~~la~~~----g----~~~~~~~~~Gs~a~~~  131 (285)
                      +.++||.++++.. +++++.+++.+....     ...|+......++++.+++++    |    .+.+++++||++|+..
T Consensus        35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~  114 (398)
T 3ele_A           35 ENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSI  114 (398)
T ss_dssp             GGCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHH
T ss_pred             CCeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHH
Confidence            5689999888764 678999998877653     245655555678888888875    2    3457999999999999


Q ss_pred             HHHHccccCC-CeEEecCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413         132 AIMTHCDRRD-SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVC  209 (285)
Q Consensus       132 al~~~~~~~g-~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~  209 (285)
                      ++++++ ++| |+|++..++|.......         ...|.+++.++.++ ++.+|+++|++++++       ++++|+
T Consensus       115 ~~~~l~-~~g~d~vl~~~p~~~~~~~~~---------~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-------~~~~v~  177 (398)
T 3ele_A          115 CFRALT-SDAYDEFITIAPYFPEYKVFV---------NAAGARLVEVPADTEHFQIDFDALEERINA-------HTRGVI  177 (398)
T ss_dssp             HHHHHC-CSTTCEEEEESSCCTHHHHHH---------HHTTCEEEEECCCTTTSSCCHHHHHHTCCT-------TEEEEE
T ss_pred             HHHHHc-CCCCCEEEEeCCCchhhHHHH---------HHcCCEEEEEecCCcCCcCCHHHHHHHhCc-------CCCEEE
Confidence            999987 689 99999888765443311         23488888888754 457899999999987       799999


Q ss_pred             EecccCCCCeeeCCHHHHHHHHHHHHH------cCCeEEEeCccCChh-------hhcc--cCCeEEEecccccCc--ce
Q psy5413         210 VENTHNYCGGTVLPMQWLRELKARCQE------HNIPVHMDGARLPLA-------EVCA--SVDTVMFCLSKGLGA--PV  272 (285)
Q Consensus       210 i~~~~n~~gG~~~~~~~l~~i~~la~~------~gi~li~Dea~~~~~-------~~~~--~~dv~~~s~sK~l~~--p~  272 (285)
                      +++|+||| |.+++.+++++|+++|++      ||+++|+||+|..+.       ....  ..++++.|+||+++.  .+
T Consensus       178 ~~~p~npt-G~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  256 (398)
T 3ele_A          178 INSPNNPS-GTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGER  256 (398)
T ss_dssp             ECSSCTTT-CCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTC
T ss_pred             EcCCCCCC-CCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCccce
Confidence            99999999 899999999999999999      999999999987321       1112  223559999999873  55


Q ss_pred             eEEeecCcccc
Q psy5413         273 GSILAGPEEFI  283 (285)
Q Consensus       273 gg~~~~~~~~i  283 (285)
                      .|+++.+++++
T Consensus       257 ~G~~~~~~~~~  267 (398)
T 3ele_A          257 IGYVLVPDEVY  267 (398)
T ss_dssp             CEEEECCTTST
T ss_pred             eEEEEEcchhh
Confidence            67777777643

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.91  E-value=5.7e-24  Score=191.01  Aligned_cols=198  Identities=14%  Similarity=0.037  Sum_probs=151.9

Q ss_pred             eeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCCeEEe
Q psy5413          69 VDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDSEIIV  146 (285)
Q Consensus        69 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~~vi~  146 (285)
                      +.|.+..+...++++++++.+....+..+...+...++++.+++++|.+  .+++++||++|+..++++++ ++|++|++
T Consensus        10 ~yl~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~-~~gd~Vl~   88 (392)
T 2z9v_A           10 VITLTAGPVNAYPEVLRGLGRTVLYDYDPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLI-SPDDVVLN   88 (392)
T ss_dssp             SEECSSSCCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHC-CTTCCEEE
T ss_pred             ceeecCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhc-CCCCEEEE
Confidence            4455556677899999999887654332333445789999999999875  57899999999999999986 58999999


Q ss_pred             cCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHH
Q psy5413         147 GDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW  226 (285)
Q Consensus       147 ~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~  226 (285)
                      +.+.|.... ...+.      ...|.+++.++.++++.+|+++|++++++     .+++++|++++++||+ |.++|   
T Consensus        89 ~~~~~~~~~-~~~~~------~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-----~~~~~~v~~~~~~npt-G~~~~---  152 (392)
T 2z9v_A           89 LASGVYGKG-FGYWA------KRYSPHLLEIEVPYNEAIDPQAVADMLKA-----HPEITVVSVCHHDTPS-GTINP---  152 (392)
T ss_dssp             EESSHHHHH-HHHHH------HHHCSCEEEEECCTTSCCCHHHHHHHHHH-----CTTCCEEEEESEEGGG-TEECC---
T ss_pred             ecCCcccHH-HHHHH------HHcCCceEEeeCCCCCCCCHHHHHHHHhc-----CCCCcEEEEeccCCCC-ceecc---
Confidence            887765432 11222      23477888888766777999999999953     1168999999999999 89999   


Q ss_pred             HHHHHHHHHHcCCeEEEeCccC-Chh--hh-cccCCeEEEecccccCccee-EEeecCcccc
Q psy5413         227 LRELKARCQEHNIPVHMDGARL-PLA--EV-CASVDTVMFCLSKGLGAPVG-SILAGPEEFI  283 (285)
Q Consensus       227 l~~i~~la~~~gi~li~Dea~~-~~~--~~-~~~~dv~~~s~sK~l~~p~g-g~~~~~~~~i  283 (285)
                      +++|+++|++||+++|+||+|+ +..  .. ..+.|+++.|+||+++++.| |+++.+++++
T Consensus       153 l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~  214 (392)
T 2z9v_A          153 IDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAW  214 (392)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHH
T ss_pred             HHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCcccccCCCceeEEEECHHHH
Confidence            9999999999999999999987 111  11 12578999999998887433 7777777654

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.91  E-value=1.5e-23  Score=188.31  Aligned_cols=202  Identities=12%  Similarity=0.077  Sum_probs=156.5

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----C----CCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----G----KEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g----~~~~~~~~~Gs~a~~~al~  134 (285)
                      |+.+++|..+.+.. .++.+.+++.+.... ...|...+...++++.+++++    |    .+.+++++||++|+..+++
T Consensus        29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~  108 (388)
T 1j32_A           29 GIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLML  108 (388)
T ss_dssp             TCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHH
T ss_pred             CCCEEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHH
Confidence            56788998877654 577899998876643 345665555788888888886    3    2457899999999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      +++ ++|++|+++.+.|.......         ...|.+++.++.++  ++.+|+++|++++++       ++++|++++
T Consensus       109 ~~~-~~gd~vl~~~~~~~~~~~~~---------~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-------~~~~v~~~~  171 (388)
T 1j32_A          109 AMI-EPGDEVIIPAPFWVSYPEMV---------KLAEGTPVILPTTVETQFKVSPEQIRQAITP-------KTKLLVFNT  171 (388)
T ss_dssp             HHC-CTTCEEEEESSCCTHHHHHH---------HHTTCEEEEECCCGGGTTCCCHHHHHHHCCT-------TEEEEEEES
T ss_pred             Hhc-CCCCEEEEcCCCChhHHHHH---------HHcCCEEEEecCCcccCCCCCHHHHHHhcCc-------CceEEEEeC
Confidence            986 58999999888775543321         23477888888753  456899999999987       789999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhc---ccCCeEEEecccccCc--ceeEEee
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVC---ASVDTVMFCLSKGLGA--PVGSILA  277 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~---~~~dv~~~s~sK~l~~--p~gg~~~  277 (285)
                      |+||+ |.++|.+++++|+++|++||+++|+||+|+.+          ..+.   .+.++++.|+||+++.  .+.|+++
T Consensus       172 p~npt-G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~  250 (388)
T 1j32_A          172 PSNPT-GMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLA  250 (388)
T ss_dssp             SCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEE
T ss_pred             CCCCC-CcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEE
Confidence            99999 89999999999999999999999999998722          1111   2457789999999974  4467888


Q ss_pred             cCccccc
Q psy5413         278 GPEEFIQ  284 (285)
Q Consensus       278 ~~~~~i~  284 (285)
                      .++++++
T Consensus       251 ~~~~~~~  257 (388)
T 1j32_A          251 GPVPLVK  257 (388)
T ss_dssp             CCHHHHH
T ss_pred             eCHHHHH
Confidence            8777653

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.91  E-value=1.6e-23  Score=188.03  Aligned_cols=200  Identities=15%  Similarity=0.127  Sum_probs=155.3

Q ss_pred             eeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----C----CCc-EEEcCChHHHHHHHHHH
Q psy5413          67 RTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----G----KEA-AIFVPSGTMGNLIAIMT  135 (285)
Q Consensus        67 ~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g----~~~-~~~~~~Gs~a~~~al~~  135 (285)
                      .+++|..+.+.. +++++.+++.+.... ...|.......++++.+++++    |    .+. +++++||++|+..++++
T Consensus        27 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~  106 (389)
T 1gd9_A           27 DVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSA  106 (389)
T ss_dssp             SCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTT
T ss_pred             CeEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHH
Confidence            568888776653 678999998877653 345665445788999999887    6    356 89999999999999999


Q ss_pred             ccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         136 HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       136 ~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      ++ ++|++|+++.++|.......         ...|.+++.++.++  ++.+|+++|++++++       ++++|++++|
T Consensus       107 ~~-~~gd~vl~~~~~~~~~~~~~---------~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-------~~~~v~~~~~  169 (389)
T 1gd9_A          107 FL-KDGEEVLIPTPAFVSYAPAV---------ILAGGKPVEVPTYEEDEFRLNVDELKKYVTD-------KTRALIINSP  169 (389)
T ss_dssp             TC-CTTCEEEEEESCCTTHHHHH---------HHHTCEEEEEECCGGGTTCCCHHHHHHHCCT-------TEEEEEEESS
T ss_pred             hC-CCCCEEEEcCCCchhHHHHH---------HHCCCEEEEeccCCccCCCCCHHHHHHhcCc-------CceEEEEECC
Confidence            86 58999999887775543322         23477888888754  356899999999976       7899999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc-----ccCCeEEEecccccCc--ceeEEeecC
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC-----ASVDTVMFCLSKGLGA--PVGSILAGP  279 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~-----~~~dv~~~s~sK~l~~--p~gg~~~~~  279 (285)
                      +||+ |.+++.+++++|+++|++||+++|+||+|+...       .+.     ...|+++.|+||+++.  .+.|+++.+
T Consensus       170 ~npt-G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~  248 (389)
T 1gd9_A          170 CNPT-GAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAP  248 (389)
T ss_dssp             CTTT-CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECC
T ss_pred             CCCC-CcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEEC
Confidence            9999 899999999999999999999999999988221       111     2346779999999974  445788887


Q ss_pred             ccccc
Q psy5413         280 EEFIQ  284 (285)
Q Consensus       280 ~~~i~  284 (285)
                      +++++
T Consensus       249 ~~~~~  253 (389)
T 1gd9_A          249 SWIIE  253 (389)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77653

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.91  E-value=2.1e-23  Score=188.06  Aligned_cols=200  Identities=19%  Similarity=0.200  Sum_probs=155.1

Q ss_pred             CCeeeeeccCCcCC--CcHHHHHHHHhcccC-CC-----Ccc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK--PTMEMKNYMFNCEVG-DD-----VYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~-~~-----~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~  134 (285)
                      |+.++||.++++.+  ++|++.+++.++... ..     .|.  ..+...++++.+++++|.+..+++++|++|+..+++
T Consensus        44 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~  123 (401)
T 1fc4_A           44 GSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFE  123 (401)
T ss_dssp             SCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHH
T ss_pred             CccEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHH
Confidence            56789999887654  588999998876542 11     221  257789999999999998877899999999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      +++ ++|+.|+++.++|.......         ...|.+++.++.     .|++++++++++..+ .+.++++|++++++
T Consensus       124 ~~~-~~gd~v~~~~~~~~~~~~~~---------~~~g~~~~~~~~-----~d~~~l~~~l~~~~~-~~~~~~~v~~~~~~  187 (401)
T 1fc4_A          124 TLL-GAEDAIISDALNHASIIDGV---------RLCKAKRYRYAN-----NDMQELEARLKEARE-AGARHVLIATDGVF  187 (401)
T ss_dssp             HHC-CTTCEEEEETTCCHHHHHHH---------HTSCSEEEEECT-----TCHHHHHHHHHHHHH-TTCSSEEEEEESEE
T ss_pred             HHc-CCCCEEEEcchhHHHHHHHH---------HHcCCceEEECC-----CCHHHHHHHHHHhhc-cCCCceEEEEeCCc
Confidence            876 68999999998886554322         234777777763     489999999875211 11157999999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhh-----------hcccCCeEEEecccccCcceeEEeecCccc
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAE-----------VCASVDTVMFCLSKGLGAPVGSILAGPEEF  282 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~-----------~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~  282 (285)
                      ||+ |.++|   +++|.++|++||+++|+||+|. ++..           +..+.|+++.|+||+++++.||+++.++++
T Consensus       188 npt-G~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~gG~~~~~~~~  263 (401)
T 1fc4_A          188 SMD-GVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEV  263 (401)
T ss_dssp             TTT-TEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEECHHH
T ss_pred             CCC-CCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCCEEEEcCHHH
Confidence            999 89999   9999999999999999999995 4321           123468889999999956458999888876


Q ss_pred             cc
Q psy5413         283 IQ  284 (285)
Q Consensus       283 i~  284 (285)
                      ++
T Consensus       264 ~~  265 (401)
T 1fc4_A          264 VE  265 (401)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.91  E-value=8.6e-24  Score=190.76  Aligned_cols=200  Identities=17%  Similarity=0.143  Sum_probs=153.2

Q ss_pred             eeeeeccCCcC--CCcHHHHHHHHhcccCC--CCccC----ChhHHHHHHHHHhHcCC-----CcEEEcCChHHHHHHHH
Q psy5413          67 RTVDIRSDTIS--KPTMEMKNYMFNCEVGD--DVYLE----DPTCKELQEKAAKLAGK-----EAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        67 ~~~~~~~~~~~--~~~~~v~~a~~~~~~~~--~~y~~----~~~~~~l~~~la~~~g~-----~~~~~~~~Gs~a~~~al  133 (285)
                      .++||.++++.  .++|++++++.++....  ..|..    .+...++++.+++++|.     +.+++++||++|+..++
T Consensus        40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~  119 (407)
T 3nra_A           40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAV  119 (407)
T ss_dssp             CCEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHH
T ss_pred             ceeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHH
Confidence            47999987766  47889999988776532  13433    23455666667777776     57899999999999999


Q ss_pred             HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeec------CCCCCCCHHHHHHHhcccccccCCceEE
Q psy5413         134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN------QKDGTFDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                      ++++ ++|++|+++.++|.......         ...|.+++.++.      ++++.+|+++|++++++       ++++
T Consensus       120 ~~l~-~~gd~vl~~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-------~~~~  182 (407)
T 3nra_A          120 AATV-ARGDKVAIVQPDYFANRKLV---------EFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA-------GARV  182 (407)
T ss_dssp             HTTC-CTTCEEEEEESCCTHHHHHH---------HHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-------TCCE
T ss_pred             HHhC-CCCCEEEEcCCcccchHHHH---------HHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh-------CCcE
Confidence            9886 68999999888876544322         234788888887      35667899999999987       7899


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhc---ccCCeEEEecccccCc--ce
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVC---ASVDTVMFCLSKGLGA--PV  272 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~---~~~dv~~~s~sK~l~~--p~  272 (285)
                      |++++|+||+ |.++|.+++++|+++|++||+++|+||+|..+          ..+.   ...++++.|+||+++.  .+
T Consensus       183 v~~~~p~npt-G~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r  261 (407)
T 3nra_A          183 FLFSNPNNPA-GVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYR  261 (407)
T ss_dssp             EEEESSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGC
T ss_pred             EEEcCCCCCC-CcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeee
Confidence            9999999999 89999999999999999999999999998721          1111   2233669999999873  55


Q ss_pred             eEEeecCccccc
Q psy5413         273 GSILAGPEEFIQ  284 (285)
Q Consensus       273 gg~~~~~~~~i~  284 (285)
                      .|++++++++++
T Consensus       262 ~G~~~~~~~~~~  273 (407)
T 3nra_A          262 LGVAFGSRAIIA  273 (407)
T ss_dssp             CEEEEECHHHHH
T ss_pred             EEEEEcCHHHHH
Confidence            677877777653

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.90  E-value=3.6e-23  Score=185.50  Aligned_cols=196  Identities=17%  Similarity=0.205  Sum_probs=154.4

Q ss_pred             CCeeeeeccCCc-C-CCcHHHHHHHHhcccC------CCCc--cCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTI-S-KPTMEMKNYMFNCEVG------DDVY--LEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~-~-~~~~~v~~a~~~~~~~------~~~y--~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~  134 (285)
                      |+.++||.++.+ + .+++++.+++.+....      ...|  +..+...++++.+++++|.+..+++++|++|+..+++
T Consensus        38 g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~~~  117 (384)
T 1bs0_A           38 DRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIA  117 (384)
T ss_dssp             TEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHH
T ss_pred             CceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHH
Confidence            567899998663 4 4788999998876542      1223  4457799999999999999888999999999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      ++. ++|+.|++++++|..+.....         ..|.+++.+|.     .|+++|++++++.    .+++++|++++++
T Consensus       118 ~~~-~~gd~v~~~~~~~~~~~~~~~---------~~g~~~~~~~~-----~d~~~l~~~l~~~----~~~~~~v~~~~~~  178 (384)
T 1bs0_A          118 AMM-AKEDRIAADRLSHASLLEAAS---------LSPSQLRRFAH-----NDVTHLARLLASP----CPGQQMVVTEGVF  178 (384)
T ss_dssp             HHC-CTTCEEEEETTCCHHHHHHHH---------TSSSEEEEECT-----TCHHHHHHHHHSC----CSSCEEEEEESBC
T ss_pred             HhC-CCCcEEEEcccccHHHHHHHH---------HcCCCEEEeCC-----CCHHHHHHHHHhc----CCCCeEEEEeCCC
Confidence            876 689999999999876544222         33778877774     4899999999762    2247899999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh--------h-hcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA--------E-VCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~--------~-~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      ||+ |.++|   +++|+++|++||+++|+||+|. +..        . .....|+++.|+||+++ |.||++++++++++
T Consensus       179 npt-G~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~GG~~~~~~~~~~  253 (384)
T 1bs0_A          179 SMD-GDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFG-VSGAAVLCSSTVAD  253 (384)
T ss_dssp             TTT-CCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTS-SCCEEEEECHHHHH
T ss_pred             CCC-CCccC---HHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhh-ccCcEEEeCHHHHH
Confidence            999 99999   9999999999999999999986 221        1 11347888999999998 56788888877654

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.90  E-value=1.4e-23  Score=187.14  Aligned_cols=200  Identities=15%  Similarity=0.122  Sum_probs=157.2

Q ss_pred             CeeeeeccCCcC-CCcHHHHHHHHhccc--CCCCccCChhHHHHHHHHHhHcCC---CcEEEcCChHHHHHHHHHHcccc
Q psy5413          66 IRTVDIRSDTIS-KPTMEMKNYMFNCEV--GDDVYLEDPTCKELQEKAAKLAGK---EAAIFVPSGTMGNLIAIMTHCDR  139 (285)
Q Consensus        66 ~~~~~~~~~~~~-~~~~~v~~a~~~~~~--~~~~y~~~~~~~~l~~~la~~~g~---~~~~~~~~Gs~a~~~al~~~~~~  139 (285)
                      +.+++|.++... .++|++.+++.+...  ....|.. +...++++.+++++|.   +.+++++||++|+..++++++ +
T Consensus        30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~-~  107 (367)
T 3euc_A           30 HGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPV-PSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAA-R  107 (367)
T ss_dssp             TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC-CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTC-C
T ss_pred             CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHc-C
Confidence            467899865544 478899999987765  2445553 5689999999999998   567999999999999999986 6


Q ss_pred             CCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCe
Q psy5413         140 RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGG  219 (285)
Q Consensus       140 ~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG  219 (285)
                      +|++|++..++|......   .      ...|.+++.++.++++.+|+++|+++++++      ++++|++++|+||+ |
T Consensus       108 ~gd~Vl~~~~~~~~~~~~---~------~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~------~~~~v~~~~~~npt-G  171 (367)
T 3euc_A          108 PGAKVMAPVPGFVMYAMS---A------QFAGLEFVGVPLRADFTLDRGAMLAAMAEH------QPAIVYLAYPNNPT-G  171 (367)
T ss_dssp             TTCEEEEEESCSCCSCHH---H------HTTTCEEEEEECCTTSCCCHHHHHHHHHHH------CCSEEEEESSCTTT-C
T ss_pred             CCCEEEEcCCCHHHHHHH---H------HHcCCeEEEecCCCCCCCCHHHHHHHhhcc------CCCEEEEcCCCCCC-C
Confidence            899999988777554332   2      245889999998777789999999999763      68999999999999 8


Q ss_pred             eeCCHHHHHHHHHHHHHc--CCeEEEeCccCCh-----hhhcc--cCCeEEEecccccCc--ceeEEeecCccccc
Q psy5413         220 TVLPMQWLRELKARCQEH--NIPVHMDGARLPL-----AEVCA--SVDTVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       220 ~~~~~~~l~~i~~la~~~--gi~li~Dea~~~~-----~~~~~--~~dv~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      .+++.+++++|+++|++|  |+++|+||+|..+     .....  ..++++.|+||+ +.  .+.|+++.++++++
T Consensus       172 ~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~  246 (367)
T 3euc_A          172 NLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-GLAGIRLGYVAGDPQWLE  246 (367)
T ss_dssp             CCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-TSCSCCEEEEEECHHHHH
T ss_pred             CCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh-cccccCceeeeeCHHHHH
Confidence            999999999999999999  9999999998832     11222  223558999998 44  45677777776653

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.90  E-value=4.8e-23  Score=186.87  Aligned_cols=202  Identities=17%  Similarity=0.190  Sum_probs=155.1

Q ss_pred             CCeeeeeccCCcCCCcHHHHHHHHhccc--CCC------Cc----cCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHH
Q psy5413          65 NIRTVDIRSDTISKPTMEMKNYMFNCEV--GDD------VY----LEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNL  130 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~--~~~------~y----~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~  130 (285)
                      +++++.|........++++.+++.++..  ...      .+    ...+...++++.++++++.+  .+++++||++|++
T Consensus        20 ~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~   99 (423)
T 3lvm_A           20 MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDN   99 (423)
T ss_dssp             CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHH
T ss_pred             cCCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHH
Confidence            4556666666667789999999998776  211      11    12345689999999999987  6899999999999


Q ss_pred             HHHHHccc---cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEE
Q psy5413         131 IAIMTHCD---RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       131 ~al~~~~~---~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                      .+++++..   ++|++|+++.+.|..........      ...|.+++.++.++++.+|+++|++++++       ++++
T Consensus       100 ~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~------~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-------~~~~  166 (423)
T 3lvm_A          100 LAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQL------EREGFEVTYLAPQRNGIIDLKELEAAMRD-------DTIL  166 (423)
T ss_dssp             HHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHH------HHTTCEEEEECCCTTSCCCHHHHHHHCCT-------TEEE
T ss_pred             HHHHHHHHhhccCCCEEEECCccchHHHHHHHHH------HHcCCEEEEeccCCCCccCHHHHHHhcCC-------CcEE
Confidence            99998762   36899999888876543322111      23488888888877888999999999987       7899


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC-hh---hhcccCCeEEEecccccCcceeEEeecCcccc
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP-LA---EVCASVDTVMFCLSKGLGAPVGSILAGPEEFI  283 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~-~~---~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i  283 (285)
                      |++++++|++ |.++|   +++|+++|++||++||+||+++. ..   ....+.|++++|+||.++++..|+++.+++.+
T Consensus       167 v~~~~~~npt-G~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~~  242 (423)
T 3lvm_A          167 VSIMHVNNEI-GVVQD---IAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPR  242 (423)
T ss_dssp             EECCSBCTTT-CBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTB
T ss_pred             EEEeCCCCCC-ccccC---HHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHhcCCCCeEEEEEecccc
Confidence            9999999999 99999   99999999999999999999882 11   11235789999999977764345666665544

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.90  E-value=1.2e-23  Score=188.27  Aligned_cols=202  Identities=13%  Similarity=0.128  Sum_probs=155.8

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc----CCC-----cEEEcCChHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA----GKE-----AAIFVPSGTMGNLIA  132 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~----g~~-----~~~~~~~Gs~a~~~a  132 (285)
                      |++++||..+.+.. ++|.+.+++.++...  ...|...+...++++.+++++    |.+     .+++++||++|+..+
T Consensus        24 g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~  103 (376)
T 2dou_A           24 GVGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHL  103 (376)
T ss_dssp             TCCCEECSSCCCCCCCCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHH
T ss_pred             CCCEEeccCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHH
Confidence            56789998877654 578999999887643  345654456889999999987    753     679999999999999


Q ss_pred             HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      +++++ ++|++|++..++|.......         ...|.+++.++..+.+.+|++++++++++       ++++|++++
T Consensus       104 ~~~l~-~~gd~vl~~~p~y~~~~~~~---------~~~g~~~~~~~~~~~~~~d~~~l~~~l~~-------~~~~v~l~~  166 (376)
T 2dou_A          104 LLALT-EPEDLLLLPEVAYPSYFGAA---------RVASLRTFLIPLREDGLADLKAVPEGVWR-------EAKVLLLNY  166 (376)
T ss_dssp             HHHHC-CTTCEEEEESSCCHHHHHHH---------HHTTCEEEEECBCTTSSBCGGGSCHHHHH-------HEEEEEECS
T ss_pred             HHHhc-CCCCEEEECCCCcHhHHHHH---------HHcCCEEEEeeCCCCCCCCHHHHHHhhcc-------CceEEEECC
Confidence            99986 58999998877765443311         23477888887733445899999999976       789999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------hhc-----ccCCeEEEecccccCc--ceeEEeecC
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------EVC-----ASVDTVMFCLSKGLGA--PVGSILAGP  279 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~-----~~~dv~~~s~sK~l~~--p~gg~~~~~  279 (285)
                      |+||+ |.++|.+++++|+++|++||+++|+||+|..+.      ...     ...++++.|+||+++.  .+.|+++.+
T Consensus       167 p~npt-G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~  245 (376)
T 2dou_A          167 PNNPT-GAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGS  245 (376)
T ss_dssp             SCTTT-CCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEEC
T ss_pred             CCCCc-CccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecC
Confidence            99999 899999999999999999999999999987321      111     1234668999999863  456778887


Q ss_pred             ccccc
Q psy5413         280 EEFIQ  284 (285)
Q Consensus       280 ~~~i~  284 (285)
                      +++++
T Consensus       246 ~~~~~  250 (376)
T 2dou_A          246 EEALA  250 (376)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.90  E-value=3.2e-23  Score=186.07  Aligned_cols=200  Identities=16%  Similarity=0.089  Sum_probs=155.9

Q ss_pred             eeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----C----CC-cEEEcCChHHHHHHHHHH
Q psy5413          67 RTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----G----KE-AAIFVPSGTMGNLIAIMT  135 (285)
Q Consensus        67 ~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g----~~-~~~~~~~Gs~a~~~al~~  135 (285)
                      .+++|..+.+.. +++.+.+++.+.... ...|.......++++.+++++    |    .+ .+++++||++|+..++++
T Consensus        31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~  110 (386)
T 1u08_A           31 QAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITA  110 (386)
T ss_dssp             TCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHH
T ss_pred             CeEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHH
Confidence            468888877653 678999999877653 345665445788888888884    5    24 789999999999999999


Q ss_pred             ccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         136 HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       136 ~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      ++ ++|++|++..+.|......   .      ...|.+++.++.++ ++.+|+++|++++++       ++++|++++|+
T Consensus       111 ~~-~~gd~vl~~~p~~~~~~~~---~------~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-------~~~~v~l~~p~  173 (386)
T 1u08_A          111 LV-RNGDEVICFDPSYDSYAPA---I------ALSGGIVKRMALQPPHFRVDWQEFAALLSE-------RTRLVILNTPH  173 (386)
T ss_dssp             HC-CTTCEEEEEESCCTTHHHH---H------HHTTCEEEEEECCTTTCCCCHHHHHHHCCT-------TEEEEEEESSC
T ss_pred             hC-CCCCEEEEeCCCchhHHHH---H------HHcCCEEEEeecCcccCcCCHHHHHHhhcc-------cCEEEEEeCCC
Confidence            86 5899999987776544331   1      23478888888754 467899999999976       78999999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC----------hhhh--cccCCeEEEecccccCc--ceeEEeecCc
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP----------LAEV--CASVDTVMFCLSKGLGA--PVGSILAGPE  280 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~----------~~~~--~~~~dv~~~s~sK~l~~--p~gg~~~~~~  280 (285)
                      ||+ |.++|.+++++|+++|++||+++|+||+|..          +..+  ..+.++++.|+||+++.  .+.|+++.++
T Consensus       174 npt-G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~  252 (386)
T 1u08_A          174 NPS-ATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPA  252 (386)
T ss_dssp             TTT-CCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCH
T ss_pred             CCC-CccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCH
Confidence            999 8999999999999999999999999999872          1111  13467779999999974  4467888777


Q ss_pred             cccc
Q psy5413         281 EFIQ  284 (285)
Q Consensus       281 ~~i~  284 (285)
                      ++++
T Consensus       253 ~~~~  256 (386)
T 1u08_A          253 PISA  256 (386)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.90  E-value=4.4e-24  Score=196.45  Aligned_cols=213  Identities=12%  Similarity=0.102  Sum_probs=146.4

Q ss_pred             CC--eeeeeccC----CcCCCcHHHHHHHHhcccC--CC--CccCChhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHH
Q psy5413          65 NI--RTVDIRSD----TISKPTMEMKNYMFNCEVG--DD--VYLEDPTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIA  132 (285)
Q Consensus        65 ~~--~~~~~~~~----~~~~~~~~v~~a~~~~~~~--~~--~y~~~~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~a  132 (285)
                      |+  +++||.++    +.++++|++.+|+.+++..  +.  .+..++...+|++.++++++  .+.++|++||++|++.|
T Consensus        72 G~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~A  151 (457)
T 3tfu_A           72 GQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVA  151 (457)
T ss_dssp             TEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHH
T ss_pred             CCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHH
Confidence            56  67777654    3456899999999887653  22  22356778999999999984  56789999999999999


Q ss_pred             HHHcccc------CCC-eEEe-cCCcceeeeccccccc-ccccc-----cccceeeeeeecCCCCCCCHHHHHHHhcccc
Q psy5413         133 IMTHCDR------RDS-EIIV-GDCSHIMLWEQGGASQ-TSVYS-----QIGRVLMRGVTNQKDGTFDLDEMEAKFSTAD  198 (285)
Q Consensus       133 l~~~~~~------~g~-~vi~-~~~~h~~~~~~~~~~~-~~~~~-----~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~  198 (285)
                      +++++..      +|+ .|++ ...||+.+.....+.. ...|.     ...+...+.+|.......|+++|+++|++  
T Consensus       152 lk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~--  229 (457)
T 3tfu_A          152 AKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQ--  229 (457)
T ss_dssp             HHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHh--
Confidence            9998743      555 5554 5677776543222210 01111     11233333444322333589999999974  


Q ss_pred             cccCCceEEEEEec-ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----hcc----cCCeEEEeccccc
Q psy5413         199 NIHCASTSLVCVEN-THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE-----VCA----SVDTVMFCLSKGL  268 (285)
Q Consensus       199 ~~~~~~~~~v~i~~-~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----~~~----~~dv~~~s~sK~l  268 (285)
                        +.+++++|++++ ++|++|..+.+.+++++|+++|++||++||+||+|+++..     ..+    ..|  +.|++|++
T Consensus       230 --~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pd--iit~sK~l  305 (457)
T 3tfu_A          230 --HAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPD--IMCVGKAL  305 (457)
T ss_dssp             --HGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS--EEEECGGG
T ss_pred             --CCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCce--EEEEChhh
Confidence              223799999999 9999977777999999999999999999999999884321     112    234  44888999


Q ss_pred             Cc--ceeEEeecCcccc
Q psy5413         269 GA--PVGSILAGPEEFI  283 (285)
Q Consensus       269 ~~--p~gg~~~~~~~~i  283 (285)
                      ++  +..|+++++++++
T Consensus       306 ~gG~~~lG~v~~~~~i~  322 (457)
T 3tfu_A          306 TGGYLSLAATLCTADVA  322 (457)
T ss_dssp             GTTSSCCEEEEEEHHHH
T ss_pred             hCCCcceEEEEEcHHHH
Confidence            88  3455666666654

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.90  E-value=4.8e-23  Score=185.65  Aligned_cols=197  Identities=21%  Similarity=0.263  Sum_probs=154.9

Q ss_pred             CCeeeeeccCCc-CC-CcHHHHHHHHhcccC----CCCc----cCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTI-SK-PTMEMKNYMFNCEVG----DDVY----LEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~-~~-~~~~v~~a~~~~~~~----~~~y----~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~  134 (285)
                      |+.++||.++++ .. +++.+.+++.+....    ...|    +..+...++++.+++++|.+.+++++||++|+..+++
T Consensus        42 g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~v~~~~ggt~a~~~~~~  121 (398)
T 3a2b_A           42 GRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLS  121 (398)
T ss_dssp             TEEEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHH
T ss_pred             CceEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH
Confidence            567899998876 54 788999998776542    1112    3456788999999999999989999999999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      +++ ++|+.|++++++|..+.....         ..|.+++.++.     +|++++++++++...   .++++|++++++
T Consensus       122 ~~~-~~gd~V~~~~p~~~~~~~~~~---------~~g~~~~~v~~-----~d~~~l~~~l~~~~~---~~~~~v~~~~~~  183 (398)
T 3a2b_A          122 CLM-GRNDYILLDERDHASIIDGSR---------LSFSKVIKYGH-----NNMEDLRAKLSRLPE---DSAKLICTDGIF  183 (398)
T ss_dssp             HSS-CTTCEEEEETTCCHHHHHHHH---------HSSSEEEEECT-----TCHHHHHHHHHTSCS---SSCEEEEEESBC
T ss_pred             HHh-CCCCEEEECCccCHHHHHHHH---------HcCCceEEeCC-----CCHHHHHHHHHhhcc---CCceEEEEeCCC
Confidence            987 689999999999876654222         34778888775     489999999976211   168999999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-h-----hhc------ccCCeEEEecccccCcceeEEeecCccc
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-A-----EVC------ASVDTVMFCLSKGLGAPVGSILAGPEEF  282 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-~-----~~~------~~~dv~~~s~sK~l~~p~gg~~~~~~~~  282 (285)
                      ||+ |.+.+   +++|+++|++||+++|+||+|... .     ...      +++|+++.|+||+++ |.||++++++++
T Consensus       184 npt-G~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~GG~~~~~~~~  258 (398)
T 3a2b_A          184 SME-GDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLGGFVAGDADV  258 (398)
T ss_dssp             TTT-CCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSCEEEEECHHH
T ss_pred             CCC-CCccC---HHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCCcEEEeCHHH
Confidence            999 89999   999999999999999999998621 1     111      236888999999998 456888888876


Q ss_pred             cc
Q psy5413         283 IQ  284 (285)
Q Consensus       283 i~  284 (285)
                      ++
T Consensus       259 ~~  260 (398)
T 3a2b_A          259 ID  260 (398)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.90  E-value=3.2e-23  Score=185.52  Aligned_cols=192  Identities=15%  Similarity=0.087  Sum_probs=149.5

Q ss_pred             eccCCcCCCcHHHHHHHHhcccCCCCcc--CChhHHHHHHHHHhHcCCC--c-EEEcCChHHHHHHHHHHccccCCCeEE
Q psy5413          71 IRSDTISKPTMEMKNYMFNCEVGDDVYL--EDPTCKELQEKAAKLAGKE--A-AIFVPSGTMGNLIAIMTHCDRRDSEII  145 (285)
Q Consensus        71 ~~~~~~~~~~~~v~~a~~~~~~~~~~y~--~~~~~~~l~~~la~~~g~~--~-~~~~~~Gs~a~~~al~~~~~~~g~~vi  145 (285)
                      +....+...++++.+++.+....  .|+  ..+...++++.+++++|.+  . +++++||++|+..++++++ ++|++|+
T Consensus        23 l~~~~~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~-~~gd~vl   99 (386)
T 2dr1_A           23 LFTAGPVACFPEVLEIMKVQMFS--HRSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGV-SKGGKVL   99 (386)
T ss_dssp             ECCSSSCCCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHS-CTTCEEE
T ss_pred             eecCCCcCCcHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhh-cCCCeEE
Confidence            34455566789999999877643  332  2456788999999999976  3 5899999999999999876 5899999


Q ss_pred             ecCCccee--eecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCC
Q psy5413         146 VGDCSHIM--LWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLP  223 (285)
Q Consensus       146 ~~~~~h~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~  223 (285)
                      ++.++|..  ...   ..      ...|.+++.++.++++.+|+++|++++++     .+++++|++++++|++ |.+.|
T Consensus       100 ~~~~~~~~~~~~~---~~------~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-----~~~~~~v~~~~~~npt-G~~~~  164 (386)
T 2dr1_A          100 VTIIGAFGKRYKE---VV------ESNGRKAVVLEYEPGKAVKPEDLDDALRK-----NPDVEAVTITYNETST-GVLNP  164 (386)
T ss_dssp             EEESSHHHHHHHH---HH------HHTTCEEEEEECCTTCCCCHHHHHHHHHH-----CTTCCEEEEESEETTT-TEECC
T ss_pred             EEcCCchhHHHHH---HH------HHhCCceEEEecCCCCCCCHHHHHHHHhc-----CCCCcEEEEEeecCCc-chhCC
Confidence            98887754  221   22      24488888888877777999999999953     1178999999999999 89999


Q ss_pred             HHHHHHHHHHHHHcCCeEEEeCccCChh---hh-cccCCeEEEecccccCcce-eEEeecCcccc
Q psy5413         224 MQWLRELKARCQEHNIPVHMDGARLPLA---EV-CASVDTVMFCLSKGLGAPV-GSILAGPEEFI  283 (285)
Q Consensus       224 ~~~l~~i~~la~~~gi~li~Dea~~~~~---~~-~~~~dv~~~s~sK~l~~p~-gg~~~~~~~~i  283 (285)
                         +++|+++|++||+++|+||+|+...   .+ ..+.|+++.|+||++++|. .|+++.+++++
T Consensus       165 ---l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~~~  226 (386)
T 2dr1_A          165 ---LPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFL  226 (386)
T ss_dssp             ---HHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSSCEEEEECHHHH
T ss_pred             ---HHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEeccccccCCCceEEEEECHHHH
Confidence               9999999999999999999988211   11 2357899999999999863 47887777664

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.90  E-value=1.9e-23  Score=186.70  Aligned_cols=198  Identities=17%  Similarity=0.112  Sum_probs=151.1

Q ss_pred             CCeeeeeccCCcC-CCcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTIS-KPTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~-~~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~~~al~  134 (285)
                      |++++||.++.+. .++|++.+++.++... ...|.. .. .++++.++++++        .+.+++++||++|+..+++
T Consensus        22 g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~   99 (377)
T 3fdb_A           22 GQGVLPLWVAESDFSTCPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAID   99 (377)
T ss_dssp             CTTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHH
T ss_pred             CCCeeeecccCCCCCCCHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHH
Confidence            5677899876554 4688999999887654 345654 44 778888888865        3467999999999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      +++ ++|++|++..++|.......         ...|.+++.++.+++  +|++++++++++       ++++|++++|+
T Consensus       100 ~~~-~~gd~vl~~~~~~~~~~~~~---------~~~g~~~~~~~~~~~--~d~~~l~~~l~~-------~~~~v~i~~p~  160 (377)
T 3fdb_A          100 HFT-PAQSKVIVPTPAYPPFFHLL---------SATQREGIFIDATGG--INLHDVEKGFQA-------GARSILLCNPY  160 (377)
T ss_dssp             HHS-CTTCCEEEEESCCTHHHHHH---------HHHTCCEEEEECTTS--CCHHHHHHHHHT-------TCCEEEEESSB
T ss_pred             Hhc-CCCCEEEEcCCCcHhHHHHH---------HHcCCEEEEccCCCC--CCHHHHHHHhcc-------CCCEEEEeCCC
Confidence            987 58999999887775543322         234888888887555  899999999987       68899999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh--------hhc----ccCCeEEEecccccCc--ceeE-EeecC
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA--------EVC----ASVDTVMFCLSKGLGA--PVGS-ILAGP  279 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~--------~~~----~~~dv~~~s~sK~l~~--p~gg-~~~~~  279 (285)
                      ||+ |.++|.+++++|+++|++||+++|+||+|..+.        .+.    ...++++.|+||+++.  .+.| +++++
T Consensus       161 npt-G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~  239 (377)
T 3fdb_A          161 NPL-GMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSN  239 (377)
T ss_dssp             TTT-TBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCS
T ss_pred             CCC-CCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCC
Confidence            999 899999999999999999999999999988321        111    1122568999999864  3445 45556


Q ss_pred             ccccc
Q psy5413         280 EEFIQ  284 (285)
Q Consensus       280 ~~~i~  284 (285)
                      +++++
T Consensus       240 ~~~~~  244 (377)
T 3fdb_A          240 PSDAE  244 (377)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66543

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.90  E-value=2.3e-23  Score=185.35  Aligned_cols=199  Identities=16%  Similarity=0.182  Sum_probs=152.3

Q ss_pred             CeeeeeccC-CcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCC--CcEEEcCChHHHHHHHHHHccccCCC
Q psy5413          66 IRTVDIRSD-TISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGK--EAAIFVPSGTMGNLIAIMTHCDRRDS  142 (285)
Q Consensus        66 ~~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~--~~~~~~~~Gs~a~~~al~~~~~~~g~  142 (285)
                      +++++|.++ ++..++|++.+++.+.......|. ++...++++.++++++.  +.+++++||++|+..++++++ ++|+
T Consensus        32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~-~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~-~~gd  109 (363)
T 3ffh_A           32 TKITKLSSNENPLGTSKKVAAIQANSSVETEIYP-DGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLL-DTTT  109 (363)
T ss_dssp             SCCEECSSCSCTTCCCHHHHHHHHTCBSCCCBC-----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC-STTC
T ss_pred             CceEEccCCCCCCCCCHHHHHHHHHHHHHhhcCC-CcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHc-cCCC
Confidence            467999876 444478899999998775544553 56678999999999986  457999999999999999986 6899


Q ss_pred             eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413         143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL  222 (285)
Q Consensus       143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~  222 (285)
                      +|+++.++|.......         ...|.+++.++.++++.+|++++++++++       ++++|++++|+||+ |.++
T Consensus       110 ~vl~~~~~~~~~~~~~---------~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-------~~~~v~~~~p~npt-G~~~  172 (363)
T 3ffh_A          110 NTVMATPTFVQYRQNA---------LIEGAEVREIPLLQDGEHDLEGMLNAIDE-------KTTIVWICNPNNPT-GNYI  172 (363)
T ss_dssp             EEEEEESSCHHHHHHH---------HHHTCEEEEEECCTTSCCCHHHHHHHCCT-------TEEEEEEESSCTTT-CCCC
T ss_pred             EEEEcCCChHHHHHHH---------HHcCCEEEEecCCCCCCcCHHHHHHhccc-------CCCEEEEeCCCCCc-CCCc
Confidence            9999887765543322         23488889998876788999999999987       79999999999999 8999


Q ss_pred             CHHHHHHHHHHHHHcCCeEEEeCccCChh--------hhcccC--CeEEEecccccCc--ceeEEeecCccccc
Q psy5413         223 PMQWLRELKARCQEHNIPVHMDGARLPLA--------EVCASV--DTVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       223 ~~~~l~~i~~la~~~gi~li~Dea~~~~~--------~~~~~~--dv~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      |.+++.+|++.|++ |+++|+||+|+.+.        ......  .+++.|+||+++.  .+.|+++.++++++
T Consensus       173 ~~~~l~~l~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~  245 (363)
T 3ffh_A          173 ELADIQAFLDRVPS-DVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIR  245 (363)
T ss_dssp             CHHHHHHHHTTSCT-TSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHH
T ss_pred             CHHHHHHHHHhCCC-CcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHHH
Confidence            97777777777766 99999999988221        111112  2458999999874  44577777777653

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.90  E-value=2.9e-23  Score=188.05  Aligned_cols=203  Identities=12%  Similarity=0.090  Sum_probs=152.8

Q ss_pred             cCCeeeeeccCCcCC-CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc----CC-----CcEEEcCChHHHHHH
Q psy5413          64 VNIRTVDIRSDTISK-PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA----GK-----EAAIFVPSGTMGNLI  131 (285)
Q Consensus        64 ~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~----g~-----~~~~~~~~Gs~a~~~  131 (285)
                      .|++++||.++.+.. ++|.+.+++.++...  ...|+..+...++++.+++++    |.     +.+++++||++|+..
T Consensus        35 ~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~  114 (412)
T 2x5d_A           35 RGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAH  114 (412)
T ss_dssp             TTCCCEECSSCCCCSCCCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHH
T ss_pred             cCCCEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHH
Confidence            366789999877654 678999999887653  235665566789999999988    63     468999999999999


Q ss_pred             HHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEEE
Q psy5413         132 AIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLVC  209 (285)
Q Consensus       132 al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~  209 (285)
                      ++++++ ++|++|++..++|.......         ...|.+++.++.+++  +.+|+++|++++++       ++++|+
T Consensus       115 ~~~~~~-~~gd~Vl~~~p~~~~~~~~~---------~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~-------~~~~v~  177 (412)
T 2x5d_A          115 LMLATL-DHGDTILVPNPSYPIHIYGA---------VIAGAQVRSVPLVPGIDFFNELERAIRESIP-------KPRMMI  177 (412)
T ss_dssp             HHHHHC-CTTCEEEEEESCCHHHHHHH---------HHHTCEEEEEECSTTSCHHHHHHHHHHTEES-------CCSEEE
T ss_pred             HHHHhC-CCCCEEEEcCCCchhHHHHH---------HHcCCEEEEeecCCccCCCCCHHHHHHhccc-------CceEEE
Confidence            999986 58999999877765443311         234778888887543  23688999999976       789999


Q ss_pred             EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhc--ccCCeEEEecccccCc--ceeEE
Q psy5413         210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVC--ASVDTVMFCLSKGLGA--PVGSI  275 (285)
Q Consensus       210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~--~~~dv~~~s~sK~l~~--p~gg~  275 (285)
                      +++|+||+ |.++|.+++++|+++|++||+++|+||+|..+.          .+.  .+.++++.|+||+++.  .+.|+
T Consensus       178 l~~p~npt-G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~  256 (412)
T 2x5d_A          178 LGFPSNPT-AQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGF  256 (412)
T ss_dssp             EESSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEE
T ss_pred             ECCCCCCC-CCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEE
Confidence            99999999 899999999999999999999999999987321          111  2445779999999973  45677


Q ss_pred             eecCccccc
Q psy5413         276 LAGPEEFIQ  284 (285)
Q Consensus       276 ~~~~~~~i~  284 (285)
                      +++++++++
T Consensus       257 ~~~~~~~~~  265 (412)
T 2x5d_A          257 MVGNPELVS  265 (412)
T ss_dssp             EEECHHHHH
T ss_pred             EEcCHHHHH
Confidence            777777654

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.90  E-value=1.6e-23  Score=188.51  Aligned_cols=202  Identities=19%  Similarity=0.203  Sum_probs=155.8

Q ss_pred             CCeeeeeccCCcCCCcHHHHHHHHhcccCC----CC------ccCChhHHHHHHHHHhHcCC---CcEEEcCChHHHHHH
Q psy5413          65 NIRTVDIRSDTISKPTMEMKNYMFNCEVGD----DV------YLEDPTCKELQEKAAKLAGK---EAAIFVPSGTMGNLI  131 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~----~~------y~~~~~~~~l~~~la~~~g~---~~~~~~~~Gs~a~~~  131 (285)
                      |+.+++|.....+..++++.+++.++....    ..      |...+...++++.++++++.   +.+++++||++|+..
T Consensus        21 g~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~  100 (406)
T 1kmj_A           21 GLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINL  100 (406)
T ss_dssp             TEECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHH
T ss_pred             CCceEEecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHH
Confidence            345677877777777889999988766421    11      12356688999999999987   457999999999999


Q ss_pred             HHHHc----cccCCCeEEecCCcceeeec-ccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceE
Q psy5413         132 AIMTH----CDRRDSEIIVGDCSHIMLWE-QGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       132 al~~~----~~~~g~~vi~~~~~h~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                      +++++    + ++|++|+++.+.|..... .....      ...|.+++.++.++++.+|+++|++++++       +++
T Consensus       101 ~~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~d~~~l~~~l~~-------~~~  166 (406)
T 1kmj_A          101 VANSWGNSNV-RAGDNIIISQMEHHANIVPWQMLC------ARVGAELRVIPLNPDGTLQLETLPTLFDE-------KTR  166 (406)
T ss_dssp             HHHHTHHHHC-CTTCEEEEETTCCGGGTHHHHHHH------HHHTCEEEEECBCTTSCBCGGGHHHHCCT-------TEE
T ss_pred             HHHHhhhhcC-CCCCEEEEecccchHHHHHHHHHH------HhCCCEEEEEecCCCCCcCHHHHHHHhcc-------CCe
Confidence            99998    5 589999998887754321 11112      23477888888766777899999999987       789


Q ss_pred             EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC-hh--hh-cccCCeEEEecccccCcceeEEeecCccc
Q psy5413         207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP-LA--EV-CASVDTVMFCLSKGLGAPVGSILAGPEEF  282 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~-~~--~~-~~~~dv~~~s~sK~l~~p~gg~~~~~~~~  282 (285)
                      +|++++++|++ |.++|   +++|+++|++||+++|+||+|+. ..  .. ..+.|+++.|+||.++++..|+++.++++
T Consensus       167 ~v~~~~~~npt-G~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~g~~G~G~~~~~~~~  242 (406)
T 1kmj_A          167 LLAITHVSNVL-GTENP---LAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEAL  242 (406)
T ss_dssp             EEEEESBCTTT-CCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHH
T ss_pred             EEEEeCCCccc-cCcCC---HHHHHHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEEchhccCCCCcEEEEEeHHH
Confidence            99999999999 89999   99999999999999999999882 11  11 13678999999999865323777777766


Q ss_pred             cc
Q psy5413         283 IQ  284 (285)
Q Consensus       283 i~  284 (285)
                      ++
T Consensus       243 ~~  244 (406)
T 1kmj_A          243 LQ  244 (406)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.90  E-value=1.4e-22  Score=179.37  Aligned_cols=207  Identities=22%  Similarity=0.296  Sum_probs=159.9

Q ss_pred             CeeeeeccCCcCCCcHHHHHHHHhcccCC-CCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCC
Q psy5413          66 IRTVDIRSDTISKPTMEMKNYMFNCEVGD-DVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDS  142 (285)
Q Consensus        66 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~-~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~  142 (285)
                      +.+++|.++..+.+++++.+++.++...+ ..++..+...++++.+++++|.+  .+++++||++|++.++++++ ++|+
T Consensus        13 p~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~-~~gd   91 (359)
T 1svv_A           13 PKPYSFVNDYSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL-RPWE   91 (359)
T ss_dssp             --CEECSCSCSSCCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC-CTTE
T ss_pred             CeeEEecCCCcCCCCHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHh-CCCC
Confidence            45788988777788999999999877542 33445677899999999998865  36899999999999999987 5899


Q ss_pred             eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413         143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL  222 (285)
Q Consensus       143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~  222 (285)
                      +|++++++|....... ..      ...|.+++.++.+ ++.+|+++|+++++++.+.++.++++|+++++ |++ |.++
T Consensus        92 ~vl~~~~~~~~~~~~~-~~------~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~pt-G~~~  161 (359)
T 1svv_A           92 AVIATQLGHISTHETG-AI------EATGHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEV-GTQY  161 (359)
T ss_dssp             EEEEETTSHHHHSSTT-HH------HHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTT-SCCC
T ss_pred             EEEEcccchHHHHHHH-HH------hcCCCeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCC-ceec
Confidence            9999988886654321 11      2457888888874 67799999999997721222335899999999 677 8999


Q ss_pred             CHHHHHHHHHHHHHcCCeEEEeCccC----Chhh-------hcccCCeEEEecccccCccee-EEeecCccccc
Q psy5413         223 PMQWLRELKARCQEHNIPVHMDGARL----PLAE-------VCASVDTVMFCLSKGLGAPVG-SILAGPEEFIQ  284 (285)
Q Consensus       223 ~~~~l~~i~~la~~~gi~li~Dea~~----~~~~-------~~~~~dv~~~s~sK~l~~p~g-g~~~~~~~~i~  284 (285)
                      |.+++++|+++|++||+++|+||+|.    +...       +....|+++++++|+ ++|.| |+++.++++++
T Consensus       162 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l~~~~~~~~  234 (359)
T 1svv_A          162 TKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA-GGMFGEALIILNDALKP  234 (359)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT-TCSSCEEEEECSGGGCT
T ss_pred             CHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC-CCCCceEEEEEcccHHH
Confidence            99999999999999999999999983    1111       114678899999997 44555 78888888765

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.9e-23  Score=191.50  Aligned_cols=202  Identities=17%  Similarity=0.116  Sum_probs=156.0

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc----CC----CcEEEcCChHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA----GK----EAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~----g~----~~~~~~~~Gs~a~~~al  133 (285)
                      ++.+++|..+.+.. +++.+.+++.++...  ...|.......++++.+++++    |.    +.+++++||++|+..++
T Consensus        56 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~  135 (447)
T 3b46_A           56 GRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCL  135 (447)
T ss_dssp             TSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHH
T ss_pred             CCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHH
Confidence            46789999887654 567999999877653  245665555778999998886    32    35789999999999999


Q ss_pred             HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC------------CCCCCHHHHHHHhccccccc
Q psy5413         134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK------------DGTFDLDEMEAKFSTADNIH  201 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------~~~~d~~~l~~~i~~~~~~~  201 (285)
                      ++++ .+||+|++..++|.......         ...|.+++.++..+            ++.+|+++|++++++     
T Consensus       136 ~~l~-~~gd~Vlv~~p~y~~~~~~~---------~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-----  200 (447)
T 3b46_A          136 MGLL-NAGDEVIVFEPFFDQYIPNI---------ELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITS-----  200 (447)
T ss_dssp             HHHC-CTTCEEEEEESCCTTHHHHH---------HHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCT-----
T ss_pred             HHHc-CCCCEEEEeCCCchhHHHHH---------HHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhcc-----
Confidence            9987 58999999877765443321         23477777777533            346899999999976     


Q ss_pred             CCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---------hhh---cccCCeEEEecccccC
Q psy5413         202 CASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---------AEV---CASVDTVMFCLSKGLG  269 (285)
Q Consensus       202 ~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---------~~~---~~~~dv~~~s~sK~l~  269 (285)
                        ++++|++++|+||+ |.+++.+++++|+++|++||+++|+||+|..+         ..+   ..+.++++.|+||+++
T Consensus       201 --~~~~v~l~~p~npt-G~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~  277 (447)
T 3b46_A          201 --KTKAVIINTPHNPI-GKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFA  277 (447)
T ss_dssp             --TEEEEEEESSCTTT-CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTT
T ss_pred             --CCeEEEEeCCCCCC-CcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcC
Confidence              79999999999999 89999999999999999999999999998731         111   1245677999999997


Q ss_pred             c--ceeEEeec-Cccccc
Q psy5413         270 A--PVGSILAG-PEEFIQ  284 (285)
Q Consensus       270 ~--p~gg~~~~-~~~~i~  284 (285)
                      +  .+.|++++ ++++++
T Consensus       278 ~~G~riG~~~~~~~~l~~  295 (447)
T 3b46_A          278 ATGWRIGWVLSLNAELLS  295 (447)
T ss_dssp             CTTSCCEEEECSCHHHHH
T ss_pred             CcchhhEEEEeCCHHHHH
Confidence            4  55678887 777654

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.90  E-value=2.2e-23  Score=187.56  Aligned_cols=202  Identities=13%  Similarity=0.059  Sum_probs=153.4

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc----C-----CC-cEEEcCChHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA----G-----KE-AAIFVPSGTMGNLIAI  133 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~----g-----~~-~~~~~~~Gs~a~~~al  133 (285)
                      |+++++|.++.+.. .+|.+.+++.++......|.......++++.+++++    |     .+ .+++++||++|+..++
T Consensus        29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~  108 (396)
T 3jtx_A           29 GMEAVPLHIGEPKHPTPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFV  108 (396)
T ss_dssp             TCCCEECSCCSCCSCCCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHH
T ss_pred             CCCeEEeCCcCCCCCCCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHH
Confidence            67889999877665 577999999887754455654444667777777764    4     34 7899999999999999


Q ss_pred             HHccccCC-----CeEEecCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEE
Q psy5413         134 MTHCDRRD-----SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       134 ~~~~~~~g-----~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                      ++++ ++|     ++|+++.++|......   .      ...|.+++.++.++ .+.+|++++++++++       ++++
T Consensus       109 ~~~~-~~g~~~~~d~vl~~~p~~~~~~~~---~------~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~-------~~~~  171 (396)
T 3jtx_A          109 QTVL-NPVSDGIKPAIVSPNPFYQIYEGA---T------LLGGGEIHFANCPAPSFNPDWRSISEEVWK-------RTKL  171 (396)
T ss_dssp             HHHC-CC---CCCCEEEEEESCCHHHHHH---H------HHTTCEEEEEECCTTTCCCCGGGSCHHHHH-------TEEE
T ss_pred             HHHh-CCCCccCCCEEEEcCCCcHhHHHH---H------HHcCCEEEEeecCCCCCccCHHHHHHhhcc-------CcEE
Confidence            9987 575     6888887776544331   1      23488888888743 345799999999987       7999


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc---------ccCCeEEEecccccCc-
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC---------ASVDTVMFCLSKGLGA-  270 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~---------~~~dv~~~s~sK~l~~-  270 (285)
                      |++++|+||+ |.+++.+++++|+++|++||+++|+||+|..+.       ...         ...++++.|+||.++. 
T Consensus       172 v~l~~p~npt-G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~  250 (396)
T 3jtx_A          172 VFVCSPNNPS-GSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVP  250 (396)
T ss_dssp             EEEESSCTTT-CCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCG
T ss_pred             EEEECCCCCC-CCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCc
Confidence            9999999999 899999999999999999999999999988211       110         2334669999997654 


Q ss_pred             -ceeEEeecCccccc
Q psy5413         271 -PVGSILAGPEEFIQ  284 (285)
Q Consensus       271 -p~gg~~~~~~~~i~  284 (285)
                       .+.|++++++++++
T Consensus       251 G~r~G~~~~~~~~~~  265 (396)
T 3jtx_A          251 GLRSGFVAGDAELLK  265 (396)
T ss_dssp             GGCCEEEEECHHHHH
T ss_pred             ccceEEEEeCHHHHH
Confidence             55677888777654

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.90  E-value=3e-23  Score=188.87  Aligned_cols=200  Identities=15%  Similarity=0.117  Sum_probs=153.4

Q ss_pred             eeeeeccCCcC-CCcHHHHHHHHhcccC----CCCccCChhHHHHHHHHHhHc----C----CC-cEEEcCChHHHHHHH
Q psy5413          67 RTVDIRSDTIS-KPTMEMKNYMFNCEVG----DDVYLEDPTCKELQEKAAKLA----G----KE-AAIFVPSGTMGNLIA  132 (285)
Q Consensus        67 ~~~~~~~~~~~-~~~~~v~~a~~~~~~~----~~~y~~~~~~~~l~~~la~~~----g----~~-~~~~~~~Gs~a~~~a  132 (285)
                      .+++|.++.+. .+++.+.+++.++...    ...|.......++++.+++++    |    .+ .+++++||++|+..+
T Consensus        38 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~  117 (429)
T 1yiz_A           38 KPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYAT  117 (429)
T ss_dssp             CCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHH
T ss_pred             CEEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHH
Confidence            57899887665 4678999999877653    235554445678888888885    5    34 689999999999999


Q ss_pred             HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC----------CCCCCHHHHHHHhcccccccC
Q psy5413         133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK----------DGTFDLDEMEAKFSTADNIHC  202 (285)
Q Consensus       133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------~~~~d~~~l~~~i~~~~~~~~  202 (285)
                      +++++ ++|++|++..++|.......         ...|.+++.++.++          ++.+|+++|++++++      
T Consensus       118 ~~~~~-~~gd~Vl~~~p~y~~~~~~~---------~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~------  181 (429)
T 1yiz_A          118 IQGHV-DEGDEVIIIEPFFDCYEPMV---------KAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE------  181 (429)
T ss_dssp             HHHHC-CTTCEEEEEESCCTTHHHHH---------HHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCT------
T ss_pred             HHHhc-CCCCEEEEcCCCchhHHHHH---------HHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhcc------
Confidence            99987 58999998877664433211         23477888887644          346899999999976      


Q ss_pred             CceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhh--cccCCeEEEecccccCc
Q psy5413         203 ASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEV--CASVDTVMFCLSKGLGA  270 (285)
Q Consensus       203 ~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~--~~~~dv~~~s~sK~l~~  270 (285)
                       ++++|++++|+||+ |.++|.+++++|+++|++||+++|+||+|+.+          ..+  ..+.|+++.|+||++++
T Consensus       182 -~~~~v~~~~p~npt-G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~  259 (429)
T 1yiz_A          182 -KTKMIIINTPHNPL-GKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSL  259 (429)
T ss_dssp             -TEEEEEEESSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTC
T ss_pred             -CceEEEECCCCCCC-CccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCC
Confidence             78999999999999 89999999999999999999999999998721          111  12456779999999874


Q ss_pred             --ceeEEeecCccccc
Q psy5413         271 --PVGSILAGPEEFIQ  284 (285)
Q Consensus       271 --p~gg~~~~~~~~i~  284 (285)
                        .+.|++++++++++
T Consensus       260 ~G~r~G~~~~~~~~~~  275 (429)
T 1yiz_A          260 TGWKIGWAYGPEALLK  275 (429)
T ss_dssp             GGGCCEEEESCHHHHH
T ss_pred             CCcceEEEEeCHHHHH
Confidence              44577777777654

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.90  E-value=5.2e-23  Score=184.90  Aligned_cols=202  Identities=17%  Similarity=0.119  Sum_probs=154.4

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----CC----CcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----GK----EAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g~----~~~~~~~~Gs~a~~~al~  134 (285)
                      ++.+++|..+.+.. .++.+.+++.+.... ...|.......++++.+++++    |.    +.+++++||++|+..+++
T Consensus        30 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~  109 (385)
T 1b5p_A           30 GVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQ  109 (385)
T ss_dssp             TCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHH
T ss_pred             CCCEEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHH
Confidence            34568888777654 467888888766542 345654455788999998886    32    457899999999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      +++ ++||+|+++.++|.....   ..      ...|.+++.++.++  ++.+|+++|++++++       ++++|++++
T Consensus       110 ~l~-~~gd~Vlv~~p~y~~~~~---~~------~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-------~~~~v~~~~  172 (385)
T 1b5p_A          110 AIL-DPGDEVIVLSPYWVSYPE---MV------RFAGGVVVEVETLPEEGFVPDPERVRRAITP-------RTKALVVNS  172 (385)
T ss_dssp             HHC-CTTCEEEEEESCCTHHHH---HH------HHTTCEEEEEECCGGGTTCCCHHHHHTTCCT-------TEEEEEEES
T ss_pred             Hhc-CCCCEEEEcCCCchhHHH---HH------HHcCCEEEEeecCcccCCCCCHHHHHHhcCC-------CCEEEEEeC
Confidence            987 589999998887754433   11      23488888888753  456899999999976       789999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------hhc---ccCCeEEEecccccCc--ceeEEeecCcc
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------EVC---ASVDTVMFCLSKGLGA--PVGSILAGPEE  281 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~---~~~dv~~~s~sK~l~~--p~gg~~~~~~~  281 (285)
                      |+||| |.+++.+++++|+++|++||+++|+||+|..+.      .+.   ...++++.|+||.++.  .+.|+++.+++
T Consensus       173 p~NPt-G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~  251 (385)
T 1b5p_A          173 PNNPT-GAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKE  251 (385)
T ss_dssp             SCTTT-CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHH
T ss_pred             CCCCC-CCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEEEEeCHH
Confidence            99999 899999999999999999999999999987321      111   1234569999999874  55788888877


Q ss_pred             ccc
Q psy5413         282 FIQ  284 (285)
Q Consensus       282 ~i~  284 (285)
                      +++
T Consensus       252 ~~~  254 (385)
T 1b5p_A          252 VIK  254 (385)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.90  E-value=5.3e-23  Score=187.52  Aligned_cols=211  Identities=14%  Similarity=0.051  Sum_probs=143.9

Q ss_pred             CCeeeeeccCC----cCCCcHHHHHHHHhcccCC-CCccCChhHHHHHHHHHhHc-CCCcEEEcCChHHHHHHHHHHccc
Q psy5413          65 NIRTVDIRSDT----ISKPTMEMKNYMFNCEVGD-DVYLEDPTCKELQEKAAKLA-GKEAAIFVPSGTMGNLIAIMTHCD  138 (285)
Q Consensus        65 ~~~~~~~~~~~----~~~~~~~v~~a~~~~~~~~-~~y~~~~~~~~l~~~la~~~-g~~~~~~~~~Gs~a~~~al~~~~~  138 (285)
                      |++++||.++.    .++.+|++.+|+.+++... ..+.+++...+|++.+++++ +.+.++|++||++|++.+++++..
T Consensus        52 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~  131 (429)
T 3k28_A           52 GNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARG  131 (429)
T ss_dssp             CCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCcCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHH
Confidence            67788887654    3447999999998876532 23345778999999999998 567789999999999999998764


Q ss_pred             cC-CCeEEe-cCCcceeeeccccccccccc----ccc------cceeeeeeecCCCCCCCHHHHHHHhcccccccCCceE
Q psy5413         139 RR-DSEIIV-GDCSHIMLWEQGGASQTSVY----SQI------GRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       139 ~~-g~~vi~-~~~~h~~~~~~~~~~~~~~~----~~~------~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                      .+ ++.|++ ...+|+.+...........+    ...      .+..++.++.     .|+++|++++++    +.++++
T Consensus       132 ~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~----~~~~~~  202 (429)
T 3k28_A          132 YTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAY-----NDLESVKYAFEQ----FGDDIA  202 (429)
T ss_dssp             HHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEET-----TCHHHHHHHHHH----HGGGEE
T ss_pred             hhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCC-----CCHHHHHHHHHh----CCCCEE
Confidence            33 455655 56677665432222100000    000      0012222332     289999999975    223789


Q ss_pred             EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----hhhcccCCeE--EEecccccCc-ceeEEeecC
Q psy5413         207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----AEVCASVDTV--MFCLSKGLGA-PVGSILAGP  279 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----~~~~~~~dv~--~~s~sK~l~~-p~gg~~~~~  279 (285)
                      +|+++++++++|....+.+++++|+++|++||++||+||+|+++    ....+..++.  +.++||++++ .+.|+++++
T Consensus       203 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~  282 (429)
T 3k28_A          203 CVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGK  282 (429)
T ss_dssp             EEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTTHHHHHHTCCCSEEEECGGGGTTSCCEEEEEC
T ss_pred             EEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchHHHHhCCCCceehhhhhhcCCCCeEEEEEc
Confidence            99999999887555667899999999999999999999999854    1111112221  5678899976 445567777


Q ss_pred             ccccc
Q psy5413         280 EEFIQ  284 (285)
Q Consensus       280 ~~~i~  284 (285)
                      +++++
T Consensus       283 ~~~~~  287 (429)
T 3k28_A          283 AEIMR  287 (429)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            77664

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.90  E-value=4.6e-23  Score=186.72  Aligned_cols=187  Identities=18%  Similarity=0.192  Sum_probs=149.6

Q ss_pred             cHHHHHHHHhcccC------CCCcc-CChhHHHHHHHHHhHcCCCcEEE---cCChHHHHHHHHHHccccCCCeEEecC-
Q psy5413          80 TMEMKNYMFNCEVG------DDVYL-EDPTCKELQEKAAKLAGKEAAIF---VPSGTMGNLIAIMTHCDRRDSEIIVGD-  148 (285)
Q Consensus        80 ~~~v~~a~~~~~~~------~~~y~-~~~~~~~l~~~la~~~g~~~~~~---~~~Gs~a~~~al~~~~~~~g~~vi~~~-  148 (285)
                      +.+|++++.+....      ...|. ..+...+|++.+++++|.+.+++   ++||++|+..++.+++ ++||+|+++. 
T Consensus        31 ~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all-~~GD~Vl~~~~  109 (409)
T 3jzl_A           31 QAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGIL-RPDDELLYITG  109 (409)
T ss_dssp             HHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHC-CTTCEEEECSS
T ss_pred             HHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhc-CCCCEEEEeCC
Confidence            56788888875422      12222 35668899999999999998877   8999999999999877 6999999886 


Q ss_pred             Ccceeeeccc-------ccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec----ccCCC
Q psy5413         149 CSHIMLWEQG-------GASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN----THNYC  217 (285)
Q Consensus       149 ~~h~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~----~~n~~  217 (285)
                      +.|..+....       ...      ...|.+++.++.++++.+|++++++++++       ++++|++++    |+|++
T Consensus       110 ~~y~~~~~~~~~~g~~~~~l------~~~G~~~~~v~~~~~g~~d~e~l~~ai~~-------~tklV~i~~s~g~p~npt  176 (409)
T 3jzl_A          110 QPYDTLEEIVGIRKQGQGSL------KDFHIGYSSVPLLENGDVDFPRIAKKMTP-------KTKMIGIQRSRGYADRPS  176 (409)
T ss_dssp             SCCTTHHHHHTSSSSSSSCT------GGGTCEEEECCCCTTSCCCHHHHHHHCCT-------TEEEEEEECSCTTSSSCC
T ss_pred             CCcHhHHHHHhcccchhhHH------HHcCCEEEEeCCCCCCCcCHHHHHHhccC-------CCeEEEEECCCCCCCCCc
Confidence            6554433211       111      34588888998877888999999999987       899999999    99999


Q ss_pred             CeeeCCHHHHHHHHHHHHH--cCCeEEEeCccCChh----hhcccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413         218 GGTVLPMQWLRELKARCQE--HNIPVHMDGARLPLA----EVCASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ  284 (285)
Q Consensus       218 gG~~~~~~~l~~i~~la~~--~gi~li~Dea~~~~~----~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~  284 (285)
                       |.+.+   +++|+++|++  ||+++|+|++|....    ....++|+++.|+||++++   ++||++++++++++
T Consensus       177 -g~v~~---l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~  248 (409)
T 3jzl_A          177 -FTIEK---IKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVD  248 (409)
T ss_dssp             -CCHHH---HHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHH
T ss_pred             -Ccccc---HHHHHHHHHhhCCCCEEEEeCCcccccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHH
Confidence             88877   9999999999  999999999988332    2345789999999999987   67999999988765

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.90  E-value=3e-23  Score=185.39  Aligned_cols=189  Identities=12%  Similarity=0.036  Sum_probs=148.4

Q ss_pred             cCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc----EEEcCChHHHHHHHHHHccccCCCeEEecCCcc
Q psy5413          76 ISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA----AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSH  151 (285)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~----~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h  151 (285)
                      +...++++++++.+....+..+...+...++++.+++++|.+.    +++++||++|+. ++..++ ++||+|++.++.|
T Consensus        10 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~-~~gd~vi~~~~~~   87 (384)
T 3zrp_A           10 PTTIKEDVLVAGLENNVGFTSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLL-KPNDKILVVSNGV   87 (384)
T ss_dssp             CSCCCHHHHHHTTCCSCCTTSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGC-CTTCEEEEECSSH
T ss_pred             CCCCCHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhc-CCCCEEEEecCCc
Confidence            3557899999998876544333345668899999999999775    699999999999 988876 6899998877665


Q ss_pred             eeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHH
Q psy5413         152 IMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELK  231 (285)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~  231 (285)
                      .... ...+.      ...|.+++.++.++++.+|+++++++++++      ++++|++++++|++ |.++|   +++|.
T Consensus        88 ~~~~-~~~~~------~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~~~~v~~~~~~npt-G~~~~---l~~i~  150 (384)
T 3zrp_A           88 FGDR-WEQIF------KRYPVNVKVLRPSPGDYVKPGEVEEEVRKS------EYKLVALTHVETST-GVREP---VKDVI  150 (384)
T ss_dssp             HHHH-HHHHH------TTSSCEEEEECCSTTCCCCHHHHHHHHHHS------CEEEEEEESEETTT-TEECC---HHHHH
T ss_pred             chHH-HHHHH------HHcCCcEEEecCCCCCCCCHHHHHHHHHhC------CCcEEEEeCCCCCC-ceECc---HHHHH
Confidence            3311 11222      345888999988777889999999999773      68999999999999 89999   99999


Q ss_pred             HHHHHcCCeEEEeCccCC-hh---hhcccCCeEEEecccccCc-ceeEEeecCcccc
Q psy5413         232 ARCQEHNIPVHMDGARLP-LA---EVCASVDTVMFCLSKGLGA-PVGSILAGPEEFI  283 (285)
Q Consensus       232 ~la~~~gi~li~Dea~~~-~~---~~~~~~dv~~~s~sK~l~~-p~gg~~~~~~~~i  283 (285)
                      ++|++||+++|+|++++. ..   ....+.|++++|+||++++ +..|+++.+++++
T Consensus       151 ~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~  207 (384)
T 3zrp_A          151 NKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKAL  207 (384)
T ss_dssp             HHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHH
T ss_pred             HHHHhcCCEEEEECcccccCccccccccCCCEEEecCcccccCCCceEEEEECHHHH
Confidence            999999999999999882 11   1123679999999999976 4457777777664

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.90  E-value=6.5e-24  Score=189.70  Aligned_cols=199  Identities=13%  Similarity=0.051  Sum_probs=151.0

Q ss_pred             eeeeeccCCcCC-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc----CC----CcEEEcCChHHHHHHHHHHcc
Q psy5413          67 RTVDIRSDTISK-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA----GK----EAAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        67 ~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~----g~----~~~~~~~~Gs~a~~~al~~~~  137 (285)
                      +++||.++.+.. ++|.+.+++.++......|+......++++.+++++    |.    +.+++++||++++..++++++
T Consensus        24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~  103 (376)
T 3ezs_A           24 RGLDLGIGEPQFETPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVL  103 (376)
T ss_dssp             CCCBCSSCCCCSCCCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHT
T ss_pred             CEEEeCCCCCCCCCCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHc
Confidence            778998766555 678999999987744455665445677888888876    54    567999999999999999987


Q ss_pred             ccC--CCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccC
Q psy5413         138 DRR--DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHN  215 (285)
Q Consensus       138 ~~~--g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n  215 (285)
                       ++  |++|+++.++|.......         ...|.+++.++.+++...++ ++++++.+       ++++|++++|+|
T Consensus       104 -~~~~gd~vl~~~p~~~~~~~~~---------~~~g~~~~~~~~~~~~~~~~-~l~~~~~~-------~~~~v~~~~p~n  165 (376)
T 3ezs_A          104 -FDYQNPTIAYPNPFYQIYEGAA---------KFIKAKSLLMPLTKENDFTP-SLNEKELQ-------EVDLVILNSPNN  165 (376)
T ss_dssp             -TTCSSCEEEEEESCCTHHHHHH---------HHTTCEEEEEECCGGGTSCC-CCCHHHHH-------HCSEEEECSSCT
T ss_pred             -CCCCCCEEEEecCCcHhHHHHH---------HHcCCEEEEcccCCCCCcch-hHHhhhcc-------CCCEEEEcCCCC
Confidence             57  899999887775443321         23488888888755434454 67777766       789999999999


Q ss_pred             CCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---------hhh-------cccCCeEEEecccccCc--ceeEEee
Q psy5413         216 YCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---------AEV-------CASVDTVMFCLSKGLGA--PVGSILA  277 (285)
Q Consensus       216 ~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---------~~~-------~~~~dv~~~s~sK~l~~--p~gg~~~  277 (285)
                      |+ |.+++.+++++|+++|++||+++|+||+|..+         ...       ....++++.|+||++|.  .+.|+++
T Consensus       166 pt-G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~  244 (376)
T 3ezs_A          166 PT-GRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIA  244 (376)
T ss_dssp             TT-CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEE
T ss_pred             Cc-CCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEe
Confidence            99 89999999999999999999999999998821         111       12344669999999863  5567777


Q ss_pred             cCccccc
Q psy5413         278 GPEEFIQ  284 (285)
Q Consensus       278 ~~~~~i~  284 (285)
                      +++++++
T Consensus       245 ~~~~~~~  251 (376)
T 3ezs_A          245 GDSRLLE  251 (376)
T ss_dssp             ECHHHHH
T ss_pred             eCHHHHH
Confidence            7777653

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.90  E-value=3.5e-23  Score=187.46  Aligned_cols=200  Identities=17%  Similarity=0.118  Sum_probs=154.5

Q ss_pred             eeeeeccCCcC-CCcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----CC----C-cEEEcCChHHHHHHHHHH
Q psy5413          67 RTVDIRSDTIS-KPTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----GK----E-AAIFVPSGTMGNLIAIMT  135 (285)
Q Consensus        67 ~~~~~~~~~~~-~~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g~----~-~~~~~~~Gs~a~~~al~~  135 (285)
                      .+++|..+.+. .+++.+.+++.++... ...|.......++++.+++++    |.    + .+++++||++|+..++++
T Consensus        26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~  105 (411)
T 2o0r_A           26 GAVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLG  105 (411)
T ss_dssp             TCEESSCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHH
T ss_pred             CeeeccCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHH
Confidence            46888877665 3678999999887654 345665555678888888886    52    3 689999999999999999


Q ss_pred             ccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC---CCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         136 HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK---DGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       136 ~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      ++ ++|++|+++.++|.......         ...|.+++.++.++   ++.+|+++|++++++       ++++|++++
T Consensus       106 ~~-~~gd~Vl~~~~~y~~~~~~~---------~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-------~~~~v~l~~  168 (411)
T 2o0r_A          106 LV-EPGSEVLLIEPFYDSYSPVV---------AMAGAHRVTVPLVPDGRGFALDADALRRAVTP-------RTRALIINS  168 (411)
T ss_dssp             HC-CTTCEEEEEESCCTTHHHHH---------HHTTCEEEEEECEEETTEEECCHHHHHHHCCT-------TEEEEEEES
T ss_pred             hc-CCCCEEEEeCCCcHhHHHHH---------HHcCCEEEEeeccccccCCCCCHHHHHHhhcc-------CceEEEEeC
Confidence            86 58999999877765543321         23477888887643   245899999999976       789999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc-----ccCCeEEEecccccCc--ceeEEeec
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC-----ASVDTVMFCLSKGLGA--PVGSILAG  278 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~-----~~~dv~~~s~sK~l~~--p~gg~~~~  278 (285)
                      |+||+ |.++|.+++++|+++|++||+++|+||+|+.+.       .+.     .+.|+++.|+||+++.  .+.|+++.
T Consensus       169 ~~npt-G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~  247 (411)
T 2o0r_A          169 PHNPT-GAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACG  247 (411)
T ss_dssp             SCTTT-CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEEC
T ss_pred             CCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEee
Confidence            99999 899999999999999999999999999988221       111     3457779999999874  45678877


Q ss_pred             Cccccc
Q psy5413         279 PEEFIQ  284 (285)
Q Consensus       279 ~~~~i~  284 (285)
                      ++++++
T Consensus       248 ~~~~~~  253 (411)
T 2o0r_A          248 PAELIA  253 (411)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            777653

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.90  E-value=3.6e-23  Score=188.59  Aligned_cols=198  Identities=14%  Similarity=0.089  Sum_probs=153.3

Q ss_pred             cCCeeeeeccCCcC-----CCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcC-------CCcEEEcCChHHHH
Q psy5413          64 VNIRTVDIRSDTIS-----KPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAG-------KEAAIFVPSGTMGN  129 (285)
Q Consensus        64 ~~~~~~~~~~~~~~-----~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g-------~~~~~~~~~Gs~a~  129 (285)
                      .++++++|..+.+.     .+++++.+++.++...  ...|.+.....++++.++++++       .+.+++++||++|+
T Consensus        52 ~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al  131 (427)
T 3dyd_A           52 PNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAI  131 (427)
T ss_dssp             TTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHH
T ss_pred             CCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHH
Confidence            36788999988865     4788999999877653  3467666778999999999987       34579999999999


Q ss_pred             HHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEE
Q psy5413         130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       130 ~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                      ..++++++ ++|++|+++.++|.....   ..      ...|.+++.++..  .++.+|++++++++++       ++++
T Consensus       132 ~~~~~~l~-~~gd~vl~~~p~~~~~~~---~~------~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~-------~~~~  194 (427)
T 3dyd_A          132 DLCLAVLA-NPGQNILVPRPGFSLYKT---LA------ESMGIEVKLYNLLPEKSWEIDLKQLEYLIDE-------KTAC  194 (427)
T ss_dssp             HHHHHHHC-CTTCEEEEEESCCTHHHH---HH------HHTTCEEEEEEEEGGGTTEECHHHHHSSCCT-------TEEE
T ss_pred             HHHHHHhc-CCCCEEEEcCCCchhHHH---HH------HHcCCEEEEEecccccCCCCCHHHHHHHhcc-------CCCE
Confidence            99999987 589999998877654332   11      2347777777753  3456899999999977       7899


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcccCCeE-EEecccccCc--ceeE
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVCASVDTV-MFCLSKGLGA--PVGS  274 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~~~dv~-~~s~sK~l~~--p~gg  274 (285)
                      |++++|+||| |.+++.+++++|+++|++||+++|+||+|..+.          .+....+++ +.|+||.+++  .+.|
T Consensus       195 v~i~~p~npt-G~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG  273 (427)
T 3dyd_A          195 LIVNNPSNPC-GSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLG  273 (427)
T ss_dssp             EEEESSCTTT-CCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCE
T ss_pred             EEEECCCCCC-CCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcceE
Confidence            9999999999 899999999999999999999999999987321          111223344 7899998655  3345


Q ss_pred             EeecC
Q psy5413         275 ILAGP  279 (285)
Q Consensus       275 ~~~~~  279 (285)
                      +++.+
T Consensus       274 ~~~~~  278 (427)
T 3dyd_A          274 WILIH  278 (427)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            55543

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.90  E-value=2.6e-23  Score=185.17  Aligned_cols=198  Identities=13%  Similarity=0.032  Sum_probs=154.2

Q ss_pred             CeeeeeccC-CcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCC--CcEEEcCChHHHHHHHHHHccccCCC
Q psy5413          66 IRTVDIRSD-TISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGK--EAAIFVPSGTMGNLIAIMTHCDRRDS  142 (285)
Q Consensus        66 ~~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~--~~~~~~~~Gs~a~~~al~~~~~~~g~  142 (285)
                      +.+++|..+ ++..++|++++++.+.......|.... ..++++.+++++|.  +.+++++||++|+..++++++ ++|+
T Consensus        30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~-~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~-~~gd  107 (365)
T 3get_A           30 KEVIKLASNENPFGTPPKAIECLRQNANKAHLYPDDS-MIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKL-NSKN  107 (365)
T ss_dssp             SCCEECSSCCCTTCSCHHHHHHHHHHGGGTTSCCCTT-CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC-CTTC
T ss_pred             CceEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCC-hHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHh-CCCC
Confidence            567999865 555578899999998776555665444 37999999999985  467999999999999999987 6899


Q ss_pred             eEEecCCcceeeecccccccccccccccceeeeeeec-CCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeee
Q psy5413         143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN-QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTV  221 (285)
Q Consensus       143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~  221 (285)
                      +|+++.++|.......         ...|.+++.++. .+++ +|++++++++++       ++++|++++|+||+ |.+
T Consensus       108 ~vl~~~~~~~~~~~~~---------~~~g~~~~~v~~~~~~~-~d~~~l~~~l~~-------~~~~v~~~~p~npt-G~~  169 (365)
T 3get_A          108 AFLQAGVTFAMYEIYA---------KQCGAKCYKTQSITHNL-DEFKKLYETHKD-------EIKLIFLCLPNNPL-GEC  169 (365)
T ss_dssp             EEEECSSCCTHHHHHH---------HHHTCEEEECSSSSCCH-HHHHHHHHHTTT-------TEEEEEEESSCTTT-CCC
T ss_pred             EEEEeCCChHHHHHHH---------HHcCCEEEEEecCCCCC-CCHHHHHHHhCC-------CCCEEEEcCCCCCC-CCC
Confidence            9999888876543321         234888888886 5667 899999999986       89999999999999 899


Q ss_pred             CCHHHHHHHHHHHHHcCCeEEEeCccCChh------------hhc--ccCCeEEEecccccCc--ceeEEeecCccccc
Q psy5413         222 LPMQWLRELKARCQEHNIPVHMDGARLPLA------------EVC--ASVDTVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       222 ~~~~~l~~i~~la~~~gi~li~Dea~~~~~------------~~~--~~~dv~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      +|.+++++|+++| ++|+++|+||+|..+.            ...  ...++++.|+||+++.  .+.|+++.++++++
T Consensus       170 ~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~  247 (365)
T 3get_A          170 LDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIIS  247 (365)
T ss_dssp             CCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHH
T ss_pred             cCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHH
Confidence            9988888888888 5799999999987322            111  1234568999999864  55677777777653

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.90  E-value=8.9e-23  Score=185.56  Aligned_cols=195  Identities=17%  Similarity=0.190  Sum_probs=149.8

Q ss_pred             cHHHHHHHHhcccC------CCCcc-CChhHHHHHHHHHhHcCCCcEEE---cCChHHHHHHHHHHccccCCCeEEecC-
Q psy5413          80 TMEMKNYMFNCEVG------DDVYL-EDPTCKELQEKAAKLAGKEAAIF---VPSGTMGNLIAIMTHCDRRDSEIIVGD-  148 (285)
Q Consensus        80 ~~~v~~a~~~~~~~------~~~y~-~~~~~~~l~~~la~~~g~~~~~~---~~~Gs~a~~~al~~~~~~~g~~vi~~~-  148 (285)
                      .++|++++.+....      ...|. ..+...+|++.+++++|.+.+++   ++||++|+..++.+++ ++||+|++++ 
T Consensus        45 ~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all-~pGD~Vl~~~~  123 (427)
T 3i16_A           45 QLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNL-RPGNTMLSVCG  123 (427)
T ss_dssp             HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHC-CTTCEEEESSS
T ss_pred             HHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHh-CCCCEEEEeCC
Confidence            46788888764321      22333 45668999999999999998877   8999999999999877 6999999887 


Q ss_pred             Ccceeeecccccccc-c-ccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec----ccCCCCeeeC
Q psy5413         149 CSHIMLWEQGGASQT-S-VYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN----THNYCGGTVL  222 (285)
Q Consensus       149 ~~h~~~~~~~~~~~~-~-~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~----~~n~~gG~~~  222 (285)
                      +.|.......+.... . ......|.+++.++.++++.+|++++++++++     .+++++|++++    |+|++ |.+.
T Consensus       124 ~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~-----~~~tklV~i~~s~~~p~npt-g~i~  197 (427)
T 3i16_A          124 EPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKE-----DESITLVHIQRSTGYGWRRA-LLIE  197 (427)
T ss_dssp             SCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHT-----CTTEEEEEEECSCCSSSSCC-CCHH
T ss_pred             CccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhC-----CCCCEEEEEEcCCCCCCCCc-ccHH
Confidence            555433211100000 0 00034588999998877888999999999982     01899999999    99998 7776


Q ss_pred             CHHHHHHHHHHHHH--cCCeEEEeCccCChh----hhcccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413         223 PMQWLRELKARCQE--HNIPVHMDGARLPLA----EVCASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ  284 (285)
Q Consensus       223 ~~~~l~~i~~la~~--~gi~li~Dea~~~~~----~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~  284 (285)
                      +   +++|+++|++  ||+++|+|++|....    ....++|+++.|+||++++   ++||++++++++++
T Consensus       198 d---l~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~  265 (427)
T 3i16_A          198 D---IKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIE  265 (427)
T ss_dssp             H---HHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHH
T ss_pred             H---HHHHHHHHHHhCCCCEEEEECCCccccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHHHHH
Confidence            6   9999999999  999999999988322    2335789999999999998   89999999988765

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.89  E-value=1.6e-23  Score=192.75  Aligned_cols=206  Identities=17%  Similarity=0.240  Sum_probs=147.8

Q ss_pred             CCeeeeeccCCcCCCcHHHHHHHHhccc-CCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccC---
Q psy5413          65 NIRTVDIRSDTISKPTMEMKNYMFNCEV-GDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRR---  140 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~-~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~---  140 (285)
                      |..++||.++.+.   +++.+++.+++. +...|+..+...++++.++++++.+.+++++||++|++.++++++ ++   
T Consensus        40 ~~~ylD~~~~~~~---~~v~~a~~~~l~~~~~~y~~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~~-~~~~~  115 (467)
T 2oqx_A           40 EDVFIDLLTDSGT---GAVTQSMQAAMMRGDEAYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLI-KKREQ  115 (467)
T ss_dssp             GGCSEECSCCSSC---SCCCHHHHHHTTSCCCCSSSCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHHH-HHHHH
T ss_pred             CCeeEecccCCCc---HHHHHHHHHHhccCcceeccCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHHh-ccccc
Confidence            5678999877655   788888777654 345677778889999999999999999999999999999999987 45   


Q ss_pred             --C----CeEEecCCcceeeecccc-cccccccccccceeeeeeecC----CCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413         141 --D----SEIIVGDCSHIMLWEQGG-ASQTSVYSQIGRVLMRGVTNQ----KDGTFDLDEMEAKFSTADNIHCASTSLVC  209 (285)
Q Consensus       141 --g----~~vi~~~~~h~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~----~~~~~d~~~l~~~i~~~~~~~~~~~~~v~  209 (285)
                        |    |+|++. .+|+.+..... .....   ...+.....++..    .++.+|+++|+++|+++.   .+++++|+
T Consensus       116 ~~G~~~~d~Ii~~-~~h~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~---~~~~~~vi  188 (467)
T 2oqx_A          116 EKGLDRSKMVAFS-NYFFDTTQGHSQINGCT---VRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG---PNNVPYIV  188 (467)
T ss_dssp             HHCCCTTTCEEEE-SSCCHHHHHHHHHTTCE---EEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC---GGGCCCEE
T ss_pred             cCCCCccceEEec-ccccccchhhhhccCcc---eeeccccccccCCCCCCccCCcCHHHHHHHHHhcC---CCceeEEE
Confidence              7    887765 56744211100 00000   0011111112221    345689999999997521   12789999


Q ss_pred             EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC-----------------hhhhc----ccCCeEEEeccccc
Q psy5413         210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP-----------------LAEVC----ASVDTVMFCLSKGL  268 (285)
Q Consensus       210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~-----------------~~~~~----~~~dv~~~s~sK~l  268 (285)
                      +++++|++||.+++.+++++|+++|++||++||+|++|..                 ...+.    ..+|++++|+||++
T Consensus       189 ~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~  268 (467)
T 2oqx_A          189 ATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDA  268 (467)
T ss_dssp             EESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTT
T ss_pred             EeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEeccccc
Confidence            9999999879999999999999999999999999965421                 11221    45788899999999


Q ss_pred             CcceeEEeecCcc
Q psy5413         269 GAPVGSILAGPEE  281 (285)
Q Consensus       269 ~~p~gg~~~~~~~  281 (285)
                      ++|.||+++++++
T Consensus       269 g~~~Gg~~~~~~~  281 (467)
T 2oqx_A          269 MVPMGGLLCMKDD  281 (467)
T ss_dssp             CCSSCEEEEECSG
T ss_pred             CCCCceEEEecCh
Confidence            9888898887665

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.89  E-value=5.9e-23  Score=185.69  Aligned_cols=198  Identities=19%  Similarity=0.103  Sum_probs=151.2

Q ss_pred             CCeeeeeccCCc---C-CCcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcC------C--CcEEEcCChHHHHHH
Q psy5413          65 NIRTVDIRSDTI---S-KPTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAG------K--EAAIFVPSGTMGNLI  131 (285)
Q Consensus        65 ~~~~~~~~~~~~---~-~~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g------~--~~~~~~~~Gs~a~~~  131 (285)
                      |+.+++|..+.+   . ..++++.+++.+.... ...|.......++++.++++++      .  +.+++++||++|+..
T Consensus        37 g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~  116 (406)
T 1xi9_A           37 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQL  116 (406)
T ss_dssp             TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHH
T ss_pred             CCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHH
Confidence            567889988777   3 3567999998876653 2356655556889999988872      2  457999999999999


Q ss_pred             HHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413         132 AIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVC  209 (285)
Q Consensus       132 al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~  209 (285)
                      ++++++ ++|++|+++.++|.......         ...|.+++.++.++  ++.+|+++|++++++       ++++|+
T Consensus       117 ~~~~l~-~~gd~Vl~~~~~~~~~~~~~---------~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-------~~~~v~  179 (406)
T 1xi9_A          117 IFGALL-DPGDEILVPGPSYPPYTGLV---------KFYGGKPVEYRTIEEEDWQPDIDDIRKKITD-------RTKAIA  179 (406)
T ss_dssp             HHHHHC-CTTCEEEEEESCCHHHHHHH---------HHTTCEEEEEEEEGGGTSEECHHHHHHHCCT-------TEEEEE
T ss_pred             HHHHhC-CCCCEEEEcCCCCccHHHHH---------HHcCCEEEEeecCCCcCCcCCHHHHHHhhCc-------CceEEE
Confidence            999986 68999999887775443321         23477888877643  345799999999987       789999


Q ss_pred             EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---------hhcccC-CeEEEecccccCc--ceeEEee
Q psy5413         210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---------EVCASV-DTVMFCLSKGLGA--PVGSILA  277 (285)
Q Consensus       210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~~~~-dv~~~s~sK~l~~--p~gg~~~  277 (285)
                      +++|+||+ |.+++.+++++|+++|++||+++|+||+|+.+.         .+..+. ++++.|+||+++.  .+.|+++
T Consensus       180 i~~p~npt-G~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  258 (406)
T 1xi9_A          180 VINPNNPT-GALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMY  258 (406)
T ss_dssp             EESSCTTT-CCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEE
T ss_pred             EECCCCCC-CCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccEEEEEE
Confidence            99999999 899999999999999999999999999987321         111133 5568999999974  4456666


Q ss_pred             --cCc
Q psy5413         278 --GPE  280 (285)
Q Consensus       278 --~~~  280 (285)
                        .++
T Consensus       259 ~~~~~  263 (406)
T 1xi9_A          259 FVDPE  263 (406)
T ss_dssp             EECTT
T ss_pred             EecCc
Confidence              776

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.89  E-value=1e-22  Score=182.64  Aligned_cols=203  Identities=11%  Similarity=0.064  Sum_probs=148.5

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccC--ChhHHHHHHHHHhHcC----CCcEEEcCChHHHHHHHHHHc
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLE--DPTCKELQEKAAKLAG----KEAAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~--~~~~~~l~~~la~~~g----~~~~~~~~~Gs~a~~~al~~~  136 (285)
                      |++++||..+.+.. ++|++.+++.++... ...|+.  .+...++++.+++.+|    .+.+++++||++|+..+++++
T Consensus        26 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l  105 (391)
T 3dzz_A           26 KEKELPMWIAEMDFKIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQF  105 (391)
T ss_dssp             CTTCEECCSSCCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHH
T ss_pred             CCCceeccccCCCCCCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHh
Confidence            45678888766555 678999999887653 334442  2234445555555555    345799999999999999998


Q ss_pred             cccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC---CCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         137 CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ---KDGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       137 ~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      + ++|++|+++.++|.......         ...|.+++.++.+   ..+.+|+++|++++++.      ++++|++++|
T Consensus       106 ~-~~gd~vl~~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~~v~i~~p  169 (391)
T 3dzz_A          106 T-SPGDQILVQEPVYNMFYSVI---------EGNGRRVISSDLIYENSKYSVNWADLEEKLATP------SVRMMVFCNP  169 (391)
T ss_dssp             S-CTTCEEEECSSCCHHHHHHH---------HHTTCEEEECCCEEETTEEECCHHHHHHHHTST------TEEEEEEESS
T ss_pred             C-CCCCeEEECCCCcHHHHHHH---------HHcCCEEEEeeeeecCCceeecHHHHHHHHhcc------CceEEEEECC
Confidence            6 68999999988876554322         2347788888763   22348999999999731      7899999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc----ccCC--eEEEecccccCc--ceeEEeec
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC----ASVD--TVMFCLSKGLGA--PVGSILAG  278 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~----~~~d--v~~~s~sK~l~~--p~gg~~~~  278 (285)
                      +||+ |.+++.+++++|+++|++||+++|+||+|+.+.       .+.    ...|  +++.|+||+++.  .+.|+++.
T Consensus       170 ~npt-G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~  248 (391)
T 3dzz_A          170 HNPI-GYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAII  248 (391)
T ss_dssp             BTTT-TBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEEC
T ss_pred             CCCC-CcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEE
Confidence            9999 899999999999999999999999999988211       111    1145  669999999863  45567766


Q ss_pred             C-ccccc
Q psy5413         279 P-EEFIQ  284 (285)
Q Consensus       279 ~-~~~i~  284 (285)
                      + +++++
T Consensus       249 ~~~~~~~  255 (391)
T 3dzz_A          249 PNPDLRA  255 (391)
T ss_dssp             CSHHHHH
T ss_pred             CCHHHHH
Confidence            5 66643

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.89  E-value=8.1e-23  Score=186.43  Aligned_cols=210  Identities=12%  Similarity=0.092  Sum_probs=140.7

Q ss_pred             CCeeeeeccCC----cCCCcHHHHHHHHhcccCC-CCccCChhHHHHHHHHHhHc-CCCcEEEcCChHHHHHHHHHHccc
Q psy5413          65 NIRTVDIRSDT----ISKPTMEMKNYMFNCEVGD-DVYLEDPTCKELQEKAAKLA-GKEAAIFVPSGTMGNLIAIMTHCD  138 (285)
Q Consensus        65 ~~~~~~~~~~~----~~~~~~~v~~a~~~~~~~~-~~y~~~~~~~~l~~~la~~~-g~~~~~~~~~Gs~a~~~al~~~~~  138 (285)
                      |++++||.++.    .++.+|++.+++.+++... ..+.+++...+|++.+++++ +.+.++|++|||+|++.+++++..
T Consensus        54 g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~  133 (434)
T 3l44_A           54 GNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARA  133 (434)
T ss_dssp             CCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCCSSCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHH
Confidence            56777776653    2457999999998876542 22345777899999999998 567789999999999999998764


Q ss_pred             c-CCCeEEe-cCCcceeeeccccccccccc----cccc------ceeeeeeecCCCCCCCHHHHHHHhcccccccCCceE
Q psy5413         139 R-RDSEIIV-GDCSHIMLWEQGGASQTSVY----SQIG------RVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       139 ~-~g~~vi~-~~~~h~~~~~~~~~~~~~~~----~~~~------g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                      . .+++|++ ...+|.++...........+    ....      ...++.+|.     .|+++|++++++    +.++++
T Consensus       134 ~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~----~~~~~~  204 (434)
T 3l44_A          134 YTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPF-----NNVETLKEALDK----WGHEVA  204 (434)
T ss_dssp             HHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECT-----TCHHHHHHHHHH----HGGGEE
T ss_pred             hhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCc-----ccHHHHHHHHHh----CCCCEE
Confidence            2 4466766 45566655432221100000    0000      012222222     289999999975    223789


Q ss_pred             EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----hhcccCCeE--EEecccccCc--ceeEEeec
Q psy5413         207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----EVCASVDTV--MFCLSKGLGA--PVGSILAG  278 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~  278 (285)
                      +|+++++++++|....+++++++|+++|++||++||+||+|+++.    ...+..++.  +.++||++++  |+|+ +++
T Consensus       205 ~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~~~~~~di~t~sK~~~~G~~iG~-~~~  283 (434)
T 3l44_A          205 AILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDLLGVTPDLTALGKVIGGGLPIGA-YGG  283 (434)
T ss_dssp             EEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHHHTCCCSEEEEEGGGGTTSSCEE-EEE
T ss_pred             EEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHHcCCCCCeeehhhhhcCCcCeee-EEE
Confidence            999999988874455589999999999999999999999998541    111111221  5678899877  5554 566


Q ss_pred             Cccccc
Q psy5413         279 PEEFIQ  284 (285)
Q Consensus       279 ~~~~i~  284 (285)
                      ++++++
T Consensus       284 ~~~i~~  289 (434)
T 3l44_A          284 KKEIME  289 (434)
T ss_dssp             CHHHHT
T ss_pred             cHHHHH
Confidence            777654

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.89  E-value=2.8e-23  Score=187.91  Aligned_cols=202  Identities=10%  Similarity=0.065  Sum_probs=155.2

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc----CC-----CcEEEcCChHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA----GK-----EAAIFVPSGTMGNLIA  132 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~----g~-----~~~~~~~~Gs~a~~~a  132 (285)
                      |++++||..+.+.. ++|.+.+++.++...  ...|...+...++++.+++++    |.     +.+++++||++|+..+
T Consensus        46 g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~  125 (404)
T 2o1b_A           46 PLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAV  125 (404)
T ss_dssp             SSCCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHH
T ss_pred             CCCEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHH
Confidence            56789999877664 578999999877643  234554456788999999987    75     3579999999999999


Q ss_pred             HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413         133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCVE  211 (285)
Q Consensus       133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~  211 (285)
                      +++++ ++|++|++..++|.......         ...|.+++.++.++ .+.+|+++|++++++       ++++|+++
T Consensus       126 ~~~l~-~~gd~Vl~~~p~y~~~~~~~---------~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-------~~~~v~l~  188 (404)
T 2o1b_A          126 PTCVI-NPGDYVLLPDPGYTDYLAGV---------LLADGKPVPLNLEPPHYLPDWSKVDSQIID-------KTKLIYLT  188 (404)
T ss_dssp             HHHHC-CTTCEEEEEESCCSSHHHHH---------HHTTCEEEEEECCTTTCCCCGGGSCHHHHH-------HEEEEEEC
T ss_pred             HHHhc-CCCCEEEEcCCCchhHHHHH---------HHCCCEEEEeccCcccCcCCHHHHHHhhcc-------CceEEEEc
Confidence            99986 58999998877765443321         23477888888754 335789999999976       78999999


Q ss_pred             cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------hhcc-----cCCeEEEecccccCc--ceeEEeec
Q psy5413         212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------EVCA-----SVDTVMFCLSKGLGA--PVGSILAG  278 (285)
Q Consensus       212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~~-----~~dv~~~s~sK~l~~--p~gg~~~~  278 (285)
                      +|+||+ |.++|.+++++|+++|++||+++|+||+|..+.      .+..     +.++++.|+||+++.  .+.|++++
T Consensus       189 ~p~npt-G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~  267 (404)
T 2o1b_A          189 YPNNPT-GSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVG  267 (404)
T ss_dssp             SSCTTT-CCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEE
T ss_pred             CCCCCC-CccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEec
Confidence            999999 899999999999999999999999999987321      1111     234669999999973  45677877


Q ss_pred             Cccccc
Q psy5413         279 PEEFIQ  284 (285)
Q Consensus       279 ~~~~i~  284 (285)
                      ++++++
T Consensus       268 ~~~~~~  273 (404)
T 2o1b_A          268 NKDMIQ  273 (404)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            777654

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.89  E-value=3e-23  Score=185.89  Aligned_cols=199  Identities=17%  Similarity=0.095  Sum_probs=151.7

Q ss_pred             eeeeccCCcCCCcHHHHHHHHhcccCC-----C---CccC-ChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHc
Q psy5413          68 TVDIRSDTISKPTMEMKNYMFNCEVGD-----D---VYLE-DPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        68 ~~~~~~~~~~~~~~~v~~a~~~~~~~~-----~---~y~~-~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~  136 (285)
                      .++|.....+..++++.+++.+.....     .   .|.. .+...++++.+++++|.+  .+++++||++|+..+++++
T Consensus        17 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~   96 (390)
T 1elu_A           17 KTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGL   96 (390)
T ss_dssp             SEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHS
T ss_pred             eEEecCCccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCC
Confidence            466666666666788999988765421     1   2332 366889999999999876  5799999999999999998


Q ss_pred             -cccCCCeEEecCCcceeeecc-cccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         137 -CDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       137 -~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                       + ++|++|+++.++|...... ..+.      ...|.+++.++.+  .++.+|+++|++++++       ++++|++++
T Consensus        97 ~~-~~gd~vl~~~~~~~~~~~~~~~~~------~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~-------~~~~v~~~~  162 (390)
T 1elu_A           97 DW-HQGDEILLTDCEHPGIIAIVQAIA------ARFGITYRFFPVAATLNQGDAAAVLANHLGP-------KTRLVILSH  162 (390)
T ss_dssp             CC-CTTCEEEEETTCCHHHHHHHHHHH------HHHCCEEEEECCGGGSSSSCHHHHHHTTCCT-------TEEEEEEES
T ss_pred             CC-CCCCEEEEecCcccHHHHHHHHHH------HHhCcEEEEEcCCCCCCccchHHHHHHhcCC-------CceEEEEec
Confidence             5 5899999988877554321 1111      2347788888764  4667899999999976       799999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHH----HcCCeEEEeCccC-Chhh--h-cccCCeEEEecccccCccee-EEeecCcccc
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQ----EHNIPVHMDGARL-PLAE--V-CASVDTVMFCLSKGLGAPVG-SILAGPEEFI  283 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~----~~gi~li~Dea~~-~~~~--~-~~~~dv~~~s~sK~l~~p~g-g~~~~~~~~i  283 (285)
                      ++|++ |.++|   +++|+++|+    +||+++|+||+|+ +...  + ..+.|+++.|+||+++++.| |+++.+++++
T Consensus       163 ~~npt-G~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~  238 (390)
T 1elu_A          163 LLWNT-GQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCL  238 (390)
T ss_dssp             BCTTT-CCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTG
T ss_pred             cccCC-ceecC---HHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEccccccccCCCceEEEEECHHhH
Confidence            99999 89999   999999999    9999999999988 2111  1 23578999999997766444 7787777765


Q ss_pred             c
Q psy5413         284 Q  284 (285)
Q Consensus       284 ~  284 (285)
                      +
T Consensus       239 ~  239 (390)
T 1elu_A          239 G  239 (390)
T ss_dssp             G
T ss_pred             h
Confidence            4

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.89  E-value=3.1e-23  Score=188.20  Aligned_cols=201  Identities=15%  Similarity=0.118  Sum_probs=153.9

Q ss_pred             CeeeeeccCCcCC-CcHHHHHHHHhcccCC---CCccCChhHHHHHHHHHhHcC------C---CcEEEcCChHHHHHHH
Q psy5413          66 IRTVDIRSDTISK-PTMEMKNYMFNCEVGD---DVYLEDPTCKELQEKAAKLAG------K---EAAIFVPSGTMGNLIA  132 (285)
Q Consensus        66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~---~~y~~~~~~~~l~~~la~~~g------~---~~~~~~~~Gs~a~~~a  132 (285)
                      ..+++|..+.+.. +++.+.+++.++....   ..|.......++++.++++++      .   +.+++++||++|+..+
T Consensus        28 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~  107 (422)
T 3fvs_A           28 HDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTA  107 (422)
T ss_dssp             SCCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHH
T ss_pred             CCceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHH
Confidence            4678998877765 6789999998876542   356655556788888888865      2   4579999999999999


Q ss_pred             HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC------------CCCCCHHHHHHHhcccccc
Q psy5413         133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK------------DGTFDLDEMEAKFSTADNI  200 (285)
Q Consensus       133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------~~~~d~~~l~~~i~~~~~~  200 (285)
                      +++++ ++|++|++..++|.......         ...|.+++.++..+            ++.+|++++++++++    
T Consensus       108 ~~~~~-~~gd~vl~~~p~~~~~~~~~---------~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~----  173 (422)
T 3fvs_A          108 FQALV-DEGDEVIIIEPFFDCYEPMT---------MMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS----  173 (422)
T ss_dssp             HHHHC-CTTCEEEEEESCCTTHHHHH---------HHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCT----
T ss_pred             HHHHc-CCCCEEEEcCCCchhhHHHH---------HHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCC----
Confidence            99986 68999998877765443211         23477888777644            335899999999987    


Q ss_pred             cCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcc--cCCeEEEeccccc
Q psy5413         201 HCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVCA--SVDTVMFCLSKGL  268 (285)
Q Consensus       201 ~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~--~~dv~~~s~sK~l  268 (285)
                         ++++|++++|+||+ |.+++.+++++|+++|++||+++|+||+|..+.          .+..  ..++++.|+||.+
T Consensus       174 ---~~~~v~~~~p~npt-G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~  249 (422)
T 3fvs_A          174 ---RTKALVLNTPNNPL-GKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTF  249 (422)
T ss_dssp             ---TEEEEEEESSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHH
T ss_pred             ---CceEEEECCCCCCC-CcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhcc
Confidence               79999999999999 899999999999999999999999999987211          1111  2235689999998


Q ss_pred             Cc--ceeEEeecCccccc
Q psy5413         269 GA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       269 ~~--p~gg~~~~~~~~i~  284 (285)
                      +.  .+.|++++++++++
T Consensus       250 g~~G~r~G~~~~~~~~~~  267 (422)
T 3fvs_A          250 SATGWKVGWVLGPDHIMK  267 (422)
T ss_dssp             TCGGGCCEEEECCHHHHH
T ss_pred             CCccceEEEEEeCHHHHH
Confidence            73  56678888777653

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.89  E-value=2.9e-23  Score=183.50  Aligned_cols=188  Identities=11%  Similarity=0.037  Sum_probs=144.0

Q ss_pred             CCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCCeEEecCCcc
Q psy5413          74 DTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSH  151 (285)
Q Consensus        74 ~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h  151 (285)
                      ..+...++++++++.+....+..+...+...++++.+++++|.+  .+++++||++|+..++++++ ++|++|+++.+.|
T Consensus         7 ~~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~-~~gd~vl~~~~~~   85 (352)
T 1iug_A            7 PGPVRLHPKALEALARPQLHHRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF-APGERVLVPVYGK   85 (352)
T ss_dssp             SSSCCCCHHHHHHHHSCCCCTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC-CTTCEEEEEECSH
T ss_pred             CCCCCCCHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc-CCCCeEEEEeCCc
Confidence            33466789999999987654333333345789999999999986  46899999999999999986 5899999988776


Q ss_pred             eeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHH
Q psy5413         152 IMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELK  231 (285)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~  231 (285)
                      .... .....      ...|.+++.++.++++.+|++++++   +       ++++|++++++||+ |.++|   +++|.
T Consensus        86 ~~~~-~~~~~------~~~g~~~~~v~~~~~~~~d~~~l~~---~-------~~~~v~~~~~~npt-G~~~~---l~~i~  144 (352)
T 1iug_A           86 FSER-FYEIA------LEAGLVVERLDYPYGDTPRPEDVAK---E-------GYAGLLLVHSETST-GALAD---LPALA  144 (352)
T ss_dssp             HHHH-HHHHH------HHTTCEEEEEECCTTCCCCTTTSCC---S-------SCSEEEEESEETTT-TEECC---HHHHH
T ss_pred             hhHH-HHHHH------HHcCCceEEEeCCCCCCCCHHHHhc---c-------CCcEEEEEEecCCc-ceecC---HHHHH
Confidence            5543 22222      2347888888876667788877765   3       68899999999999 89999   99999


Q ss_pred             HHHHHc--CCeEEEeCccC-Chh--hh-cccCCeEEEecccccCccee-EEeecCcccc
Q psy5413         232 ARCQEH--NIPVHMDGARL-PLA--EV-CASVDTVMFCLSKGLGAPVG-SILAGPEEFI  283 (285)
Q Consensus       232 ~la~~~--gi~li~Dea~~-~~~--~~-~~~~dv~~~s~sK~l~~p~g-g~~~~~~~~i  283 (285)
                      ++|++|  |+++|+||+|+ +..  .. ..+.|+++.|+||+++++.| |+++.+++++
T Consensus       145 ~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~  203 (352)
T 1iug_A          145 RAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRAL  203 (352)
T ss_dssp             HHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHH
T ss_pred             HHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccccCCCceeEEEECHHHH
Confidence            999999  99999999987 211  11 12578999999998877533 6776666654

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.89  E-value=3.2e-23  Score=187.70  Aligned_cols=200  Identities=17%  Similarity=0.111  Sum_probs=153.1

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcCC--------CcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAGK--------EAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g~--------~~~~~~~~Gs~a~~~al~  134 (285)
                      |+.+++|..+.+.. .++.+.+++ ++... ...|.......++++.++++++.        +.+++++||++|+..+++
T Consensus        42 g~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~  120 (409)
T 2gb3_A           42 GVRIHHLNIGQPDLKTPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFA  120 (409)
T ss_dssp             TCEEEECSSCCCCSCCCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHH
T ss_pred             CCCEEeccCCCCCCCCCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHH
Confidence            56789999877763 567999999 76643 33566555578899999998742        457999999999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      +++ ++|++|+++.++|.......         ...|.+++.++.++  ++.+ +++|++++++       ++++|++++
T Consensus       121 ~~~-~~gd~Vl~~~~~~~~~~~~~---------~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~-------~~~~v~~~~  182 (409)
T 2gb3_A          121 VIA-NPGDEILVLEPFYANYNAFA---------KIAGVKLIPVTRRMEEGFAI-PQNLESFINE-------RTKGIVLSN  182 (409)
T ss_dssp             HHC-CTTCEEEEEESCCTHHHHHH---------HHHTCEEEEEECCGGGTSCC-CTTGGGGCCT-------TEEEEEEES
T ss_pred             HhC-CCCCEEEEcCCCchhHHHHH---------HHcCCEEEEeccCCCCCCcc-HHHHHHhhCc-------CCeEEEECC
Confidence            986 68999999887775543322         23477888888753  2333 7888888876       789999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------h-hc--ccCCeEEEecccccCc--ceeEEeecCc-
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------E-VC--ASVDTVMFCLSKGLGA--PVGSILAGPE-  280 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~-~~--~~~dv~~~s~sK~l~~--p~gg~~~~~~-  280 (285)
                      |+||+ |.+++.+++++|+++|++||+++|+||+|+...      . +.  ...|+++.|+||+++.  .+.|+++.++ 
T Consensus       183 p~npt-G~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~  261 (409)
T 2gb3_A          183 PCNPT-GVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNE  261 (409)
T ss_dssp             SCTTT-CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCH
T ss_pred             CCCCC-CCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccCCccceEEEEEECcH
Confidence            99999 889999999999999999999999999987221      1 11  2457779999999974  4467777776 


Q ss_pred             cccc
Q psy5413         281 EFIQ  284 (285)
Q Consensus       281 ~~i~  284 (285)
                      ++++
T Consensus       262 ~l~~  265 (409)
T 2gb3_A          262 ELIS  265 (409)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6653

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.89  E-value=2.4e-22  Score=182.61  Aligned_cols=163  Identities=17%  Similarity=0.192  Sum_probs=134.9

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccccc-ccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGA-SQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~~~~~~~g~~~~~~  177 (285)
                      .++...+|++.++++.|.+.+++++||++|+..++++++ ++||+|+++++.|..+...... .      ...|.+++.+
T Consensus        79 ~~p~~~~l~~~la~~~g~~~~~~~~sG~~Ai~~al~~l~-~~Gd~Vi~~~~~y~~~~~~~~~~~------~~~g~~~~~v  151 (414)
T 3ndn_A           79 GNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALL-GAGDRLVAARSLFGSCFVVCSEIL------PRWGVQTVFV  151 (414)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTC-CTTCEEEEESCCCHHHHHHHHTHH------HHTTCEEEEE
T ss_pred             CChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEcCCccchHHHHHHHHH------HHcCcEEEEe
Confidence            578899999999999999989999999999999999886 6999999988776554321111 1      2358888888


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~  254 (285)
                      +..     |+++|++++++       ++++|++++|+||+ |.+.+   +++|+++|++||++||+||+|+..   ....
T Consensus       152 ~~~-----d~~~l~~ai~~-------~t~~v~le~p~Npt-G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~~~~  215 (414)
T 3ndn_A          152 DGD-----DLSQWERALSV-------PTQAVFFETPSNPM-QSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQQGFP  215 (414)
T ss_dssp             CTT-----CHHHHHHHTSS-------CCSEEEEESSCTTT-CCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCCCGG
T ss_pred             CCC-----CHHHHHHhcCC-------CCeEEEEECCCCCC-Ccccc---HHHHHHHHHHcCCEEEEECCCcccccCCchh
Confidence            763     89999999987       78999999999999 89999   999999999999999999999822   1234


Q ss_pred             ccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413         255 ASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ  284 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~  284 (285)
                      .++|+++.|++|++++   +++|+++++++.++
T Consensus       216 ~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~  248 (414)
T 3ndn_A          216 LGVDVVVYSGTKHIDGQGRVLGGAILGDREYID  248 (414)
T ss_dssp             GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHT
T ss_pred             cCCCeEeccCCccccCCCCceEEEEEECHHHHH
Confidence            5689999999999987   56888888876554

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.89  E-value=3.2e-23  Score=188.91  Aligned_cols=203  Identities=12%  Similarity=0.060  Sum_probs=155.6

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhccc-CC-CCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEV-GD-DVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~-~~-~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~~~al  133 (285)
                      |+.+++|.++.+.. +++++.+++.+... +. ..|.......++++.++++++        .+.+++++||++|+..++
T Consensus        43 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~  122 (437)
T 3g0t_A           43 GTKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSF  122 (437)
T ss_dssp             TCCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred             CCCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHH
Confidence            56789998766655 57899999987765 33 456654556889999999886        346799999999999999


Q ss_pred             HHccc-cCCC--eEEecCCcceeeecccccccccccccccceeeeeeecC-CCCCCCHHHHHHHh-cccccccCCceEEE
Q psy5413         134 MTHCD-RRDS--EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKF-STADNIHCASTSLV  208 (285)
Q Consensus       134 ~~~~~-~~g~--~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i-~~~~~~~~~~~~~v  208 (285)
                      ++++. ++|+  +|+++.++|.......         ...|.+++.++.+ +.+.+|+++|++++ +.       ++++|
T Consensus       123 ~~l~~~~~gd~~~Vl~~~p~~~~~~~~~---------~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~-------~~~~v  186 (437)
T 3g0t_A          123 LVANRTHKNREYGTLFIDPGFNLNKLQC---------RILGQKFESFDLFEYRGEKLREKLESYLQTG-------QFCSI  186 (437)
T ss_dssp             HHHTTSCTTCSCCEEEEESCCHHHHHHH---------HHHTCCCEEEEGGGGCTTHHHHHHHHHHTTT-------CCCEE
T ss_pred             HHHhcCCCCCccEEEEeCCCcHhHHHHH---------HHcCCEEEEEeecCCCCccCHHHHHHHHhcC-------CceEE
Confidence            98751 4888  8999887775543322         2347788888874 34468999999999 44       78999


Q ss_pred             EEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---------------hhhc--ccCCeEEEecccccCc-
Q psy5413         209 CVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---------------AEVC--ASVDTVMFCLSKGLGA-  270 (285)
Q Consensus       209 ~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---------------~~~~--~~~dv~~~s~sK~l~~-  270 (285)
                      ++++|+||+ |.+++.+++++|+++|++||+++|+||+|+.+               ..+.  ...++++.|+||+++. 
T Consensus       187 ~l~~p~npt-G~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~  265 (437)
T 3g0t_A          187 IYSNPNNPT-WQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYA  265 (437)
T ss_dssp             EEESSCTTT-CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCG
T ss_pred             EEeCCCCCC-CCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCc
Confidence            999999999 89999999999999999999999999998721               1111  2233669999999874 


Q ss_pred             -ceeEEeecCccccc
Q psy5413         271 -PVGSILAGPEEFIQ  284 (285)
Q Consensus       271 -p~gg~~~~~~~~i~  284 (285)
                       .+.|+++.++++++
T Consensus       266 G~r~G~~~~~~~~~~  280 (437)
T 3g0t_A          266 GQRIGVLMISGKLYE  280 (437)
T ss_dssp             GGCCEEEEECHHHHH
T ss_pred             cceeEEEEECHHHhh
Confidence             55678877777654

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.89  E-value=1.5e-22  Score=184.09  Aligned_cols=189  Identities=18%  Similarity=0.214  Sum_probs=149.0

Q ss_pred             CcHHHHHHHHhcccC------CCCcc-CChhHHHHHHHHHhHcCCCcEEE---cCChHHHHHHHHHHccccCCCeEEecC
Q psy5413          79 PTMEMKNYMFNCEVG------DDVYL-EDPTCKELQEKAAKLAGKEAAIF---VPSGTMGNLIAIMTHCDRRDSEIIVGD  148 (285)
Q Consensus        79 ~~~~v~~a~~~~~~~------~~~y~-~~~~~~~l~~~la~~~g~~~~~~---~~~Gs~a~~~al~~~~~~~g~~vi~~~  148 (285)
                      .+++|++++.+...+      ...|. ..+...+|++.+++++|.+.+++   ++||++|+..++.+++ ++||+|++.+
T Consensus        45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all-~pGD~Vl~~~  123 (427)
T 3hvy_A           45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNL-RPNDTMMSIC  123 (427)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTC-CTTCEEEECS
T ss_pred             hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhc-CCCCEEEEeC
Confidence            357899998875432      22232 35568999999999999998877   8999999999999887 6999999886


Q ss_pred             -Ccceeeeccc--------ccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec----ccC
Q psy5413         149 -CSHIMLWEQG--------GASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN----THN  215 (285)
Q Consensus       149 -~~h~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~----~~n  215 (285)
                       +.|.......        ...      ...|.+++.++. +++.+|+++++++++++     +++++|++++    |+|
T Consensus       124 ~~~y~~~~~~~g~~~~~~~~~l------~~~G~~~~~v~~-~~~~~d~e~l~~~i~~~-----~~tklV~i~~s~gyp~n  191 (427)
T 3hvy_A          124 GMPYDTLHDIIGMDDSKKVGSL------REYGVKYKMVDL-KDGKVDINTVKEELKKD-----DSIKLIHIQRSTGYGWR  191 (427)
T ss_dssp             SSCCGGGHHHHTCCTTCCSCCT------GGGTCEEEECCC-BTTBCCHHHHHHHHHHC-----TTEEEEEEESSCCSSSS
T ss_pred             CCCchhHHHHhccccchhhhHH------HHcCCEEEEecC-CCCCcCHHHHHHHhhCC-----CCCEEEEEECCCCCCCC
Confidence             5543322110        111      245888888888 67889999999999830     1899999999    999


Q ss_pred             CCCeeeCCHHHHHHHHHHHHH--cCCeEEEeCccCCh----hhhcccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413         216 YCGGTVLPMQWLRELKARCQE--HNIPVHMDGARLPL----AEVCASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ  284 (285)
Q Consensus       216 ~~gG~~~~~~~l~~i~~la~~--~gi~li~Dea~~~~----~~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~  284 (285)
                      ++ |.+.+   +++|+++|++  ||+++|+|++|+..    .....++|+++.|+||++++   ++||++++++++++
T Consensus       192 pt-g~v~d---l~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~  265 (427)
T 3hvy_A          192 KS-LRIAE---IAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVT  265 (427)
T ss_dssp             CC-CCHHH---HHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHH
T ss_pred             cc-ccHHH---HHHHHHHHHHhCCCCEEEEECCccccccCCCCcccCCeEEEECCcccccccccceEEEEEECHHHHH
Confidence            98 77766   9999999999  89999999998832    23345689999999999998   89999999988765

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.89  E-value=1.3e-22  Score=181.30  Aligned_cols=196  Identities=18%  Similarity=0.169  Sum_probs=149.0

Q ss_pred             eeccCCcCCCcHHHHHHHHhcccCC---C------CccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccc
Q psy5413          70 DIRSDTISKPTMEMKNYMFNCEVGD---D------VYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCD  138 (285)
Q Consensus        70 ~~~~~~~~~~~~~v~~a~~~~~~~~---~------~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~  138 (285)
                      .|.....+.+++++++++.++....   .      .|...+...++++.+++++|.+  .+++++||++|+..+++++..
T Consensus         4 yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~   83 (384)
T 1eg5_A            4 YFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAE   83 (384)
T ss_dssp             ECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHH
T ss_pred             EEecCccCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhh
Confidence            3444444578899999998776531   0      1223355789999999999975  679999999999999999862


Q ss_pred             ---cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccC
Q psy5413         139 ---RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHN  215 (285)
Q Consensus       139 ---~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n  215 (285)
                         ++|++|+++.+.|..........      ...|.+++.++.++++.+|+++|++++++       ++++|++++++|
T Consensus        84 ~~~~~gd~vl~~~~~~~~~~~~~~~~------~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-------~~~~v~~~~~~n  150 (384)
T 1eg5_A           84 TFEKRKRTIITTPIEHKAVLETMKYL------SMKGFKVKYVPVDSRGVVKLEELEKLVDE-------DTFLVSIMAANN  150 (384)
T ss_dssp             HTTTTCCEEEECTTSCHHHHHHHHHH------HHTTCEEEECCBCTTSCBCHHHHHHHCCT-------TEEEEEEESBCT
T ss_pred             hccCCCCEEEECCCCchHHHHHHHHH------HhcCCEEEEEccCCCCccCHHHHHHHhCC-------CCeEEEEECCCC
Confidence               58999999888775443322111      23478888888877778999999999987       799999999999


Q ss_pred             CCCeeeCCHHHHHHHHHHHHHcC--CeEEEeCccC-Chh--hhc-ccCCeEEEecccccCcceeEEeecCccc
Q psy5413         216 YCGGTVLPMQWLRELKARCQEHN--IPVHMDGARL-PLA--EVC-ASVDTVMFCLSKGLGAPVGSILAGPEEF  282 (285)
Q Consensus       216 ~~gG~~~~~~~l~~i~~la~~~g--i~li~Dea~~-~~~--~~~-~~~dv~~~s~sK~l~~p~gg~~~~~~~~  282 (285)
                      |+ |.++|   +++|.++|++||  +++|+||+|+ +..  .+. .+.|++++|+||+++.+-.|+++.++++
T Consensus       151 pt-G~~~~---~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~G~G~~~~~~~~  219 (384)
T 1eg5_A          151 EV-GTIQP---VEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGV  219 (384)
T ss_dssp             TT-CBBCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTS
T ss_pred             Cc-ccccC---HHHHHHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcCCCceEEEEEcCCC
Confidence            99 89999   899999999999  9999999987 111  111 2578999999998765323677776654

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.89  E-value=7.9e-23  Score=181.37  Aligned_cols=196  Identities=9%  Similarity=0.082  Sum_probs=149.8

Q ss_pred             eeeeccCCcCCCcHHHHHHHHhcccCCCCcc--CChhHHHHHHHHHhHcCCC----cEEEcCChHHHHHHHHHHccccCC
Q psy5413          68 TVDIRSDTISKPTMEMKNYMFNCEVGDDVYL--EDPTCKELQEKAAKLAGKE----AAIFVPSGTMGNLIAIMTHCDRRD  141 (285)
Q Consensus        68 ~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~--~~~~~~~l~~~la~~~g~~----~~~~~~~Gs~a~~~al~~~~~~~g  141 (285)
                      +++|..+ +...+|++.+++.++. ++ .+.  ..+...++++.+++++|.+    .+++++||++|+..++++++ ++|
T Consensus         5 ~~~~~~g-p~~~~~~v~~a~~~~~-~~-~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~-~~g   80 (366)
T 1m32_A            5 YLLLTPG-PLTTSRTVKEAMLFDS-CT-WDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL-GPQ   80 (366)
T ss_dssp             CEECSSS-SCCCCHHHHHTTCCCC-CT-TSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC-CTT
T ss_pred             cccccCC-CcCCCHHHHHHHhhhh-cC-CCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhc-CCC
Confidence            4677777 5668899999998754 22 222  1256899999999999843    37999999999999999987 588


Q ss_pred             CeEEec-CCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCee
Q psy5413         142 SEIIVG-DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT  220 (285)
Q Consensus       142 ~~vi~~-~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~  220 (285)
                      ++|++. +.+|.....  ...      ...|.+++.++.++++.+|+++|+++++++     .++++|++++++||+ |.
T Consensus        81 d~vi~~~~~~~~~~~~--~~~------~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~-----~~~~~v~~~~~~npt-G~  146 (366)
T 1m32_A           81 DKVLIVSNGAYGARMV--EMA------GLMGIAHHAYDCGEVARPDVQAIDAILNAD-----PTISHIAMVHSETTT-GM  146 (366)
T ss_dssp             CCEEEEESSHHHHHHH--HHH------HHHTCCEEEEECCTTSCCCHHHHHHHHHHC-----TTCCEEEEESEETTT-TE
T ss_pred             CeEEEEeCCCccHHHH--HHH------HHhCCceEEEeCCCCCCCCHHHHHHHHhcC-----CCeEEEEEecccCCc-ce
Confidence            887654 577754221  122      234778888887677779999999999761     147899999999999 89


Q ss_pred             eCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh--hh-cccCCeEEEecccccCccee-EEeecCccccc
Q psy5413         221 VLPMQWLRELKARCQEHNIPVHMDGARL-PLA--EV-CASVDTVMFCLSKGLGAPVG-SILAGPEEFIQ  284 (285)
Q Consensus       221 ~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~--~~-~~~~dv~~~s~sK~l~~p~g-g~~~~~~~~i~  284 (285)
                      ++|   +++|+++|++||+++|+||+|+ +..  .+ ..+.|+++.|+||+++++.| |+++.++++++
T Consensus       147 ~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~  212 (366)
T 1m32_A          147 LNP---IDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLA  212 (366)
T ss_dssp             ECC---HHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHT
T ss_pred             ecC---HHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCcccccCCCceEEEEECHHHHH
Confidence            999   9999999999999999999987 111  11 13578999999999977554 88888777654

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.89  E-value=3.9e-23  Score=186.75  Aligned_cols=201  Identities=17%  Similarity=0.107  Sum_probs=153.6

Q ss_pred             CeeeeeccCCcCC-CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcC--------C-CcEEEcCChHHHHHHHH
Q psy5413          66 IRTVDIRSDTISK-PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAG--------K-EAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g--------~-~~~~~~~~Gs~a~~~al  133 (285)
                      ..+++|..+.+.. +++.+.+++.++...  ...|.......++++.++++++        . +.+++++||++|+..++
T Consensus        23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~  102 (410)
T 3e2y_A           23 PSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSI  102 (410)
T ss_dssp             TTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHH
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHH
Confidence            4578998887765 678999999887653  2356554456789999998875        2 56899999999999999


Q ss_pred             HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC-----------CCCCCCHHHHHHHhcccccccC
Q psy5413         134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-----------KDGTFDLDEMEAKFSTADNIHC  202 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~d~~~l~~~i~~~~~~~~  202 (285)
                      ++++ ++|++|++..++|.......         ...|.+++.++..           .++.+|++++++++++      
T Consensus       103 ~~~~-~~gd~vl~~~p~~~~~~~~~---------~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~------  166 (410)
T 3e2y_A          103 QGLV-DPGDEVIIMVPFYDCYEPMV---------RMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS------  166 (410)
T ss_dssp             HHHC-CTTCEEEEEESCCTTHHHHH---------HHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCT------
T ss_pred             HHhc-CCCCEEEEeCCCchhhHHHH---------HHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCC------
Confidence            9987 58999998877765443321         2347777777653           2345799999999976      


Q ss_pred             CceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcc--cCCeEEEecccccCc
Q psy5413         203 ASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVCA--SVDTVMFCLSKGLGA  270 (285)
Q Consensus       203 ~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~--~~dv~~~s~sK~l~~  270 (285)
                       ++++|++++|+||+ |.+++.+++++|+++|++||+++|+||+|..+.          .+..  ...+++.|+||+++.
T Consensus       167 -~~~~v~~~~p~npt-G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~  244 (410)
T 3e2y_A          167 -KTKAIILNTPHNPL-GKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSV  244 (410)
T ss_dssp             -TEEEEEEESSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSC
T ss_pred             -CceEEEEeCCCCCC-CcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCC
Confidence             79999999999999 899999999999999999999999999987211          1111  122558999999873


Q ss_pred             --ceeEEeecCccccc
Q psy5413         271 --PVGSILAGPEEFIQ  284 (285)
Q Consensus       271 --p~gg~~~~~~~~i~  284 (285)
                        .+.|++++++++++
T Consensus       245 ~G~r~G~~~~~~~~~~  260 (410)
T 3e2y_A          245 TGWKLGWSIGPAHLIK  260 (410)
T ss_dssp             GGGCCEEEECCHHHHH
T ss_pred             CCceEEEEEECHHHHH
Confidence              56678888877654

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.89  E-value=1.5e-22  Score=181.94  Aligned_cols=200  Identities=12%  Similarity=0.051  Sum_probs=148.4

Q ss_pred             cCCeeeeeccCCcCCC-cHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHHHHHH
Q psy5413          64 VNIRTVDIRSDTISKP-TMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        64 ~~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~~~al  133 (285)
                      .|++++||.++.+..+ +|++.+++.++... ...|.......++++.++++++        .+.+++++||++|+..++
T Consensus        29 ~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~  108 (391)
T 3h14_A           29 AGRRIIHMEVGQPGTGAPRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAF  108 (391)
T ss_dssp             TTCCCEECCCSSCSSCSCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHH
T ss_pred             cCCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHH
Confidence            4678899998777664 67899999887653 3456554456789999988863        356799999999999999


Q ss_pred             HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413         134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLVCVE  211 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~i~  211 (285)
                      ++++ ++|++|+++.++|......   .      ...|.+++.++.+++  +.+|+++++++          ++++|+++
T Consensus       109 ~~l~-~~gd~vl~~~p~~~~~~~~---~------~~~g~~~~~v~~~~~~~~~~d~~~l~~~----------~~~~v~i~  168 (391)
T 3h14_A          109 TALF-DSGDRVGIGAPGYPSYRQI---L------RALGLVPVDLPTAPENRLQPVPADFAGL----------DLAGLMVA  168 (391)
T ss_dssp             HHHC-CTTCEEEEEESCCHHHHHH---H------HHTTCEEEEEECCGGGTTSCCHHHHTTS----------CCSEEEEE
T ss_pred             HHhc-CCCCEEEEcCCCCccHHHH---H------HHcCCEEEEeecCcccCCCCCHHHHHhc----------CCeEEEEC
Confidence            9987 6899999988777554332   1      234888888887543  45798888765          36899999


Q ss_pred             cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------hhc--ccCCeEEEecccccCc--ceeEEeecCcc
Q psy5413         212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------EVC--ASVDTVMFCLSKGLGA--PVGSILAGPEE  281 (285)
Q Consensus       212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~--~~~dv~~~s~sK~l~~--p~gg~~~~~~~  281 (285)
                      +|+||+ |.++|.+++++|+++|++||+++|+||+|..+.      ...  ...++++.|+||+++.  .+.|+++.+++
T Consensus       169 ~p~npt-G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~  247 (391)
T 3h14_A          169 SPANPT-GTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMVVPED  247 (391)
T ss_dssp             SSCTTT-CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEECCGG
T ss_pred             CCCCCC-CccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEEeCHH
Confidence            999999 899999999999999999999999999988221      111  1233568999999863  56678888777


Q ss_pred             ccc
Q psy5413         282 FIQ  284 (285)
Q Consensus       282 ~i~  284 (285)
                      +++
T Consensus       248 ~~~  250 (391)
T 3h14_A          248 QVR  250 (391)
T ss_dssp             GHH
T ss_pred             HHH
Confidence            654

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.89  E-value=5.4e-23  Score=184.81  Aligned_cols=191  Identities=17%  Similarity=0.159  Sum_probs=149.0

Q ss_pred             eccCCcCCCcHHHHHHHHhcccCCCCcc--CChhHHHHHHHHHhHcCCC---cEEEcCChHHHHHHHHHHccccCCCeEE
Q psy5413          71 IRSDTISKPTMEMKNYMFNCEVGDDVYL--EDPTCKELQEKAAKLAGKE---AAIFVPSGTMGNLIAIMTHCDRRDSEII  145 (285)
Q Consensus        71 ~~~~~~~~~~~~v~~a~~~~~~~~~~y~--~~~~~~~l~~~la~~~g~~---~~~~~~~Gs~a~~~al~~~~~~~g~~vi  145 (285)
                      +.+.++...++++.+++.+....  .|+  ..+...++++.+++++|.+   .+++++||++|+..++++++ ++|++|+
T Consensus        37 l~~~~~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~-~~gd~Vl  113 (393)
T 1vjo_A           37 LLGPGPSNAHPSVLQAMNVSPVG--HLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV-EPGDVVL  113 (393)
T ss_dssp             ECSSSCCCCCHHHHHHHSSCCCC--TTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC-CTTCEEE
T ss_pred             eccCCCCCCCHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhcc-CCCCEEE
Confidence            44555677899999999887653  343  2245788899999998875   57999999999999999987 5899999


Q ss_pred             ecCCccee--eecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCC
Q psy5413         146 VGDCSHIM--LWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLP  223 (285)
Q Consensus       146 ~~~~~h~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~  223 (285)
                      +..++|..  ...   ..      ...|.+++.++.++++.+|+++|++++++.      ++++|++++++||+ |.+.|
T Consensus       114 ~~~~~~~~~~~~~---~~------~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~------~~~~v~~~~~~npt-G~~~~  177 (393)
T 1vjo_A          114 IGVAGYFGNRLVD---MA------GRYGADVRTISKPWGEVFSLEELRTALETH------RPAILALVHAETST-GARQP  177 (393)
T ss_dssp             EEESSHHHHHHHH---HH------HHTTCEEEEEECCTTCCCCHHHHHHHHHHH------CCSEEEEESEETTT-TEECC
T ss_pred             EEcCChhHHHHHH---HH------HHcCCceEEEecCCCCCCCHHHHHHHHhhC------CceEEEEeccCCCc-ceecc
Confidence            98877654  222   12      234788888888777789999999999762      57899999999999 88999


Q ss_pred             HHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCcce-eEEeecCcccc
Q psy5413         224 MQWLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPV-GSILAGPEEFI  283 (285)
Q Consensus       224 ~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~-gg~~~~~~~~i  283 (285)
                         +++|+++|++||+++|+||+|+ +   ......+.|+++.|+||++++|. .|+++.+++++
T Consensus       178 ---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~  239 (393)
T 1vjo_A          178 ---LEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAI  239 (393)
T ss_dssp             ---CTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHH
T ss_pred             ---HHHHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcCcccccCCCceEEEEECHHHH
Confidence               8999999999999999999988 1   11111356889999999998843 37777777654

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.89  E-value=3.8e-22  Score=181.48  Aligned_cols=205  Identities=19%  Similarity=0.149  Sum_probs=142.7

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCCCC---ccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcc
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGDDV---YLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~~---y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~  137 (285)
                      |++++||.++    ..++++|++.+++.+++.....   ....+...++++.+++++|.+.+++++||++|++.+++++.
T Consensus        56 g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~ggteA~~~al~~~~  135 (420)
T 2pb2_A           56 GKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLAR  135 (420)
T ss_dssp             CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHH
T ss_pred             CCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhCCCCeEEEeCCHHHHHHHHHHHHH
Confidence            6778898765    3455789999999887653211   12467789999999999998889999999999999999876


Q ss_pred             cc------CCC-eEEec-CCcceeeeccccccccccccccc---ceeeeeeecCCCCCCCHHHHHHHhcccccccCCceE
Q psy5413         138 DR------RDS-EIIVG-DCSHIMLWEQGGASQTSVYSQIG---RVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       138 ~~------~g~-~vi~~-~~~h~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                      ..      +|+ +|++. ..+|..+...........+...+   ...+..++.     .|+++|+++|++       +++
T Consensus       136 ~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-----~d~~~le~~i~~-------~~~  203 (420)
T 2pb2_A          136 HYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-----NDLHAVKAVMDD-------HTC  203 (420)
T ss_dssp             HHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-----TCHHHHHHHCCT-------TEE
T ss_pred             HHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-----CCHHHHHHHhcc-------Cce
Confidence            32      564 67765 45666554322111000000000   111333333     389999999986       899


Q ss_pred             EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh---------hcccCCeEEEecccccCc--ceeEE
Q psy5413         207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE---------VCASVDTVMFCLSKGLGA--PVGSI  275 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~---------~~~~~dv~~~s~sK~l~~--p~gg~  275 (285)
                      +|++++++|++|..+++.+++++|+++|++||++||+||+|+++..         .....|++  +++|++++  |.|++
T Consensus       204 ~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii--t~sK~l~~G~~iG~~  281 (420)
T 2pb2_A          204 AVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL--TSAKALGGGFPVSAM  281 (420)
T ss_dssp             EEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEE
T ss_pred             EEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE--EecccccCCCceEEE
Confidence            9999999987633679999999999999999999999999984321         11134655  67899986  45554


Q ss_pred             eecCccccc
Q psy5413         276 LAGPEEFIQ  284 (285)
Q Consensus       276 ~~~~~~~i~  284 (285)
                      + .++++++
T Consensus       282 ~-~~~~l~~  289 (420)
T 2pb2_A          282 L-TTQEIAS  289 (420)
T ss_dssp             E-ECHHHHT
T ss_pred             E-EhHHHHH
Confidence            4 4555554

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.89  E-value=4.7e-23  Score=189.52  Aligned_cols=232  Identities=14%  Similarity=0.087  Sum_probs=159.4

Q ss_pred             CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC----CCCcc-CC
Q psy5413          26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG----DDVYL-ED  100 (285)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~----~~~y~-~~  100 (285)
                      .|..+.+..+.++|+..++.+++.++.||..                  +.++.+|++.+|+.+|+..    +..++ .+
T Consensus        49 ~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~Ai~~q~~~l~~~~~~~~~~~  110 (473)
T 4e3q_A           49 GTVVVTHGEGPYIVDVNGRRYLDANSGLWNM------------------VAGFDHKGLIDAAKAQYERFPGYHAFFGRMS  110 (473)
T ss_dssp             CCEEEEEEETTEEEETTCCEEEETTTTTTTC------------------TTCSCCHHHHHHHHHHHHHCCCCCCCTTEEE
T ss_pred             CCEEEEeeecCEEEeCCCCEEEEcccCHHHh------------------hccCCCHHHHHHHHHHHHhcccccccccccC
Confidence            4677888888999988777777777666653                  2377999999999987753    22333 45


Q ss_pred             hhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCCe-EEe-cCCcceeeecccccccccccccc-
Q psy5413         101 PTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDSE-IIV-GDCSHIMLWEQGGASQTSVYSQI-  169 (285)
Q Consensus       101 ~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~~-vi~-~~~~h~~~~~~~~~~~~~~~~~~-  169 (285)
                      +...+|.++|+++..  .++++|++|||+|++.|++++...      +++. ||. ...||+.+.....+.. ..+... 
T Consensus       111 ~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg-~~~~~~~  189 (473)
T 4e3q_A          111 DQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTG-KPYNSVF  189 (473)
T ss_dssp             HHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSC-CGGGGGG
T ss_pred             HHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccc-ccccccc
Confidence            668899999999974  567899999999999999997531      3333 443 5788987754322221 111111 


Q ss_pred             ----cceeeeeeec----CCCCC-------CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHH
Q psy5413         170 ----GRVLMRGVTN----QKDGT-------FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARC  234 (285)
Q Consensus       170 ----~g~~~~~~~~----~~~~~-------~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la  234 (285)
                          .+...+..|.    .+.+.       ...+++++.|.+.   +.+++++|++|++++..|..+.|++++++|+++|
T Consensus       190 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~---~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc  266 (473)
T 4e3q_A          190 GLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQRE---GADTIAGFFAEPVMGAGGVIPPAKGYFQAILPIL  266 (473)
T ss_dssp             TCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHH---CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHH
T ss_pred             CCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhh---CCCceEEEEeCCccCCCCceeCCHHHHHHHHHHh
Confidence                1222222221    01111       1234566666442   3447999999999999866677789999999999


Q ss_pred             HHcCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecC
Q psy5413         235 QEHNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGP  279 (285)
Q Consensus       235 ~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~  279 (285)
                      ++||++||+||+++++     ....++.++.  +.+++|.+++   |+|++++++
T Consensus       267 ~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~  321 (473)
T 4e3q_A          267 RKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGP  321 (473)
T ss_dssp             HHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECH
T ss_pred             cccceEEeccCccccCCcccchhHHHhcCCCCChHHhcccccCCCCCcccccccH
Confidence            9999999999998844     3344556666  7778899976   888777654

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.89  E-value=6.6e-23  Score=184.12  Aligned_cols=190  Identities=17%  Similarity=0.136  Sum_probs=146.0

Q ss_pred             cCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc---EEEcCChHHHHHHHHHHccccCCCeEEecCCcce
Q psy5413          76 ISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA---AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHI  152 (285)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~---~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~  152 (285)
                      +...++++.+++.+....+......+...++++.+++++|.+.   +++++||++|+..++++++ ++|++|+++.+.|.
T Consensus        27 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~-~~gd~vl~~~~~~~  105 (393)
T 2huf_A           27 PSNAPQRVLDAMSRPILGHLHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLL-EDGDVILIGHTGHW  105 (393)
T ss_dssp             CCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC-CTTCEEEEEESSHH
T ss_pred             CCCCCHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHh-CCCCEEEEECCCcc
Confidence            4567899999998876543211234568899999999999753   5799999999999999986 58999999887765


Q ss_pred             eeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHH
Q psy5413         153 MLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKA  232 (285)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~  232 (285)
                      ... .....      ...|.+++.++.++++.+|+++++++|++.      ++++|++++++|++ |.++|   +++|++
T Consensus       106 ~~~-~~~~~------~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~~~~v~~~~~~npt-G~~~~---l~~i~~  168 (393)
T 2huf_A          106 GDR-SADMA------TRYGADVRVVKSKVGQSLSLDEIRDALLIH------KPSVLFLTQGDSST-GVLQG---LEGVGA  168 (393)
T ss_dssp             HHH-HHHHH------HHTTCEEEEEECCTTCCCCHHHHHHHHHHH------CCSEEEEESEETTT-TEECC---CTTHHH
T ss_pred             hHH-HHHHH------HHcCCeeEEEeCCCCCCCCHHHHHHHHhcc------CCcEEEEEccCCCc-cccCC---HHHHHH
Confidence            421 11122      235788888887677789999999999752      57899999999999 89999   999999


Q ss_pred             HHHHcCCeEEEeCccC-Chh--hh-cccCCeEEEecccccCccee-EEeecCcccc
Q psy5413         233 RCQEHNIPVHMDGARL-PLA--EV-CASVDTVMFCLSKGLGAPVG-SILAGPEEFI  283 (285)
Q Consensus       233 la~~~gi~li~Dea~~-~~~--~~-~~~~dv~~~s~sK~l~~p~g-g~~~~~~~~i  283 (285)
                      +|++||+++|+||++. +..  .+ ..+.|+++.|+||+++++.| |+++.+++++
T Consensus       169 ~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~  224 (393)
T 2huf_A          169 LCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAV  224 (393)
T ss_dssp             HHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCCCSSCEEEEECHHHH
T ss_pred             HHHHcCCEEEEEcccccCCCCcchhhcCccEEEECCCcccccCCCeEEEEECHHHH
Confidence            9999999999999987 111  11 13578999999999876333 6777776654

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.89  E-value=6.5e-23  Score=185.09  Aligned_cols=194  Identities=14%  Similarity=0.091  Sum_probs=149.9

Q ss_pred             eeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc---EEEcCChHHHHHHHHHHccccCCCeEEe
Q psy5413          70 DIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA---AIFVPSGTMGNLIAIMTHCDRRDSEIIV  146 (285)
Q Consensus        70 ~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~---~~~~~~Gs~a~~~al~~~~~~~g~~vi~  146 (285)
                      .+.+..+...++++.+++.++..++......+...++++.++++++.+.   +++++||++|+..++++++ ++||+|++
T Consensus        15 ~~~~pgp~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~-~~gd~Vl~   93 (411)
T 3nnk_A           15 LLMGPGPINADPRVLRAMSSQLIGQYDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI-RPGDKVLV   93 (411)
T ss_dssp             EEESSSCCCCCHHHHHHHTSCCCCTTCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             eeecCCCCCCCHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc-CCCCEEEE
Confidence            3444556778999999998876543322223557899999999998754   4788899999999999986 68999999


Q ss_pred             cCCccee--eecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCH
Q psy5413         147 GDCSHIM--LWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPM  224 (285)
Q Consensus       147 ~~~~h~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~  224 (285)
                      ..+.|..  ...   ..      ...|.+++.++.++++.+|+++|+++|+++      ++++|++++++|++ |.+.| 
T Consensus        94 ~~~~~~~~~~~~---~~------~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~~~~v~~~~~~npt-G~~~~-  156 (411)
T 3nnk_A           94 PVFGRFGHLLCE---IA------RRCRAEVHTIEVPWGEVFTPDQVEDAVKRI------RPRLLLTVQGDTST-TMLQP-  156 (411)
T ss_dssp             EECSHHHHHHHH---HH------HHTTCEEEEEECCTTCCCCHHHHHHHHHHH------CCSEEEEESEETTT-TEECC-
T ss_pred             ecCCchHHHHHH---HH------HHcCCeEEEEecCCCCCCCHHHHHHHHhhC------CCeEEEEeCCCCCc-ceecc-
Confidence            8877643  221   22      345888889988777888999999999752      68999999999999 89999 


Q ss_pred             HHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCcc-eeEEeecCcccc
Q psy5413         225 QWLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAP-VGSILAGPEEFI  283 (285)
Q Consensus       225 ~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p-~gg~~~~~~~~i  283 (285)
                        +++|+++|++||+++|+||+++ +   ......++|+++.++||+++++ ..|+++.+++++
T Consensus       157 --l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~  218 (411)
T 3nnk_A          157 --LAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARME  218 (411)
T ss_dssp             --CTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHH
T ss_pred             --HHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccCCCCceEEEEECHHHH
Confidence              9999999999999999999987 2   1112236789999999997663 347777776654

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.89  E-value=1.2e-22  Score=184.59  Aligned_cols=202  Identities=14%  Similarity=0.132  Sum_probs=145.5

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccC--ChhHHHHHHHHHhHcC----CCcEEEcCChHHHHHHHHHHc
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLE--DPTCKELQEKAAKLAG----KEAAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~--~~~~~~l~~~la~~~g----~~~~~~~~~Gs~a~~~al~~~  136 (285)
                      ++.++||..+.+.. ++|++.+++.++... ...|..  .+...++++.+++.++    .+.+++++||++|++.+++++
T Consensus        60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~  139 (421)
T 3l8a_A           60 NPELLQMWVADMDFLPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAF  139 (421)
T ss_dssp             CTTCEECCSSCCCSCCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHH
T ss_pred             CCCeeecccCCCCCCCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHh
Confidence            45778887665554 678999999877652 344442  3344555555555555    345799999999999999998


Q ss_pred             cccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC---CCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         137 CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ---KDGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       137 ~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      + ++|++|++..+.|.......         ...|.+++.+|..   .++.+|+++|++++++.      ++++|++++|
T Consensus       140 ~-~~gd~Vi~~~~~y~~~~~~~---------~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~------~~~~vil~~p  203 (421)
T 3l8a_A          140 S-EKGDAVLINSPVYYPFARTI---------RLNDHRLVENSLQIINGRFEIDFEQLEKDIIDN------NVKIYLLCSP  203 (421)
T ss_dssp             S-CTEEEEEEEESCCHHHHHHH---------HHTTEEEEEEECEEETTEEECCHHHHHHHHHHT------TEEEEEEESS
T ss_pred             c-CCCCEEEECCCCcHHHHHHH---------HHCCCEEEeccccccCCCeeeCHHHHHHHhhcc------CCeEEEECCC
Confidence            6 58899998777665433211         2347777877753   22358999999999731      7999999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhc---ccCCeEEEecccccCc--ceeEEeec
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVC---ASVDTVMFCLSKGLGA--PVGSILAG  278 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~---~~~dv~~~s~sK~l~~--p~gg~~~~  278 (285)
                      +||+ |.+++.+++++|+++|++||++||+||+|+.+.          .+.   ....+++.|+||+++.  ...|+++.
T Consensus       204 ~npt-G~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~  282 (421)
T 3l8a_A          204 HNPG-GRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAII  282 (421)
T ss_dssp             BTTT-TBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEEC
T ss_pred             CCCC-CCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEc
Confidence            9999 799999999999999999999999999987321          111   1223559999999863  33455554


Q ss_pred             C-cccc
Q psy5413         279 P-EEFI  283 (285)
Q Consensus       279 ~-~~~i  283 (285)
                      + ++++
T Consensus       283 ~~~~l~  288 (421)
T 3l8a_A          283 QNESLR  288 (421)
T ss_dssp             CSHHHH
T ss_pred             CCHHHH
Confidence            4 6654

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.89  E-value=1.4e-22  Score=187.23  Aligned_cols=217  Identities=17%  Similarity=0.138  Sum_probs=144.4

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCC---CC-ccCChhHHHHHHHHHhHc--CCCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD---DV-YLEDPTCKELQEKAAKLA--GKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~---~~-y~~~~~~~~l~~~la~~~--g~~~~~~~~~Gs~a~~~al~  134 (285)
                      |++++||.++    +.++.+|+|.+|+.+++...   .. ...++...+|++.+++++  +.+.++|++||++|++.|++
T Consensus        53 G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik  132 (476)
T 3i5t_A           53 GRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALR  132 (476)
T ss_dssp             CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHH
T ss_pred             CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHH
Confidence            4566666544    23568999999998876531   12 245677899999999998  46778999999999999999


Q ss_pred             Hcccc------CC-CeEEe-cCCcceeeeccccccccccccc-----ccceeeeeeecCCCC-CCC--------HHHHHH
Q psy5413         135 THCDR------RD-SEIIV-GDCSHIMLWEQGGASQTSVYSQ-----IGRVLMRGVTNQKDG-TFD--------LDEMEA  192 (285)
Q Consensus       135 ~~~~~------~g-~~vi~-~~~~h~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~-~~d--------~~~l~~  192 (285)
                      +++..      ++ +.||+ ...||+++.........+.|..     ..+...+..|..... ..|        +++|++
T Consensus       133 ~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~  212 (476)
T 3i5t_A          133 FSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFED  212 (476)
T ss_dssp             HHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHH
Confidence            98743      33 35554 5677877643222221122211     123333333321111 112        789999


Q ss_pred             HhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcc-cCCeE--EEec
Q psy5413         193 KFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCA-SVDTV--MFCL  264 (285)
Q Consensus       193 ~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~-~~dv~--~~s~  264 (285)
                      ++++.   +.+++++|++|+++|++|..+++.++|++|+++|++||++||+||+|+++.     ...+ ..++.  +.++
T Consensus       213 ~i~~~---~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~  289 (476)
T 3i5t_A          213 RIESL---GPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITF  289 (476)
T ss_dssp             HHHHH---CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEE
T ss_pred             HHHhc---CCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcchhhh
Confidence            88641   113789999999999985578899999999999999999999999988441     1223 33333  5578


Q ss_pred             ccccCc--ceeEEeecCccccc
Q psy5413         265 SKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       265 sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      +|++++  ...|++++++++++
T Consensus       290 sK~l~~G~~plg~v~~~~~i~~  311 (476)
T 3i5t_A          290 AKGVTSGYVPLGGLAISEAVLA  311 (476)
T ss_dssp             CGGGGTTSSCCEEEEECHHHHH
T ss_pred             hhhhcCCCcCeEEEEECHHHHH
Confidence            899976  23345556666653

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.89  E-value=2.9e-22  Score=182.43  Aligned_cols=211  Identities=17%  Similarity=0.084  Sum_probs=143.2

Q ss_pred             CCeeeeeccCC----cCCCcHHHHHHHHhcccCCCCcc-CChhHHHHHHHHHhHcC-CCcEEEcCChHHHHHHHHHHccc
Q psy5413          65 NIRTVDIRSDT----ISKPTMEMKNYMFNCEVGDDVYL-EDPTCKELQEKAAKLAG-KEAAIFVPSGTMGNLIAIMTHCD  138 (285)
Q Consensus        65 ~~~~~~~~~~~----~~~~~~~v~~a~~~~~~~~~~y~-~~~~~~~l~~~la~~~g-~~~~~~~~~Gs~a~~~al~~~~~  138 (285)
                      |++++||.++.    .++.+|++.+++.+++.....|+ .++...++++.++++++ .+.++|++||++|++.+++++..
T Consensus        51 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~  130 (427)
T 3fq8_A           51 GNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRA  130 (427)
T ss_dssp             SCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHH
Confidence            56788887654    23479999999998775432222 56778999999999984 56789999999999999987653


Q ss_pred             cCC-CeEEe-cCCcceeeeccccccccccc----ccccc------eeeeeeecCCCCCCCHHHHHHHhcccccccCCceE
Q psy5413         139 RRD-SEIIV-GDCSHIMLWEQGGASQTSVY----SQIGR------VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       139 ~~g-~~vi~-~~~~h~~~~~~~~~~~~~~~----~~~~g------~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                      .++ ++|++ ...+|+.+............    ....+      ..+..++.     .|+++|++++++    +.++++
T Consensus       131 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~----~~~~~~  201 (427)
T 3fq8_A          131 YTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-----NDLEAVKALFAE----NPGEIA  201 (427)
T ss_dssp             HHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET-----TCHHHHHHHHHH----STTTEE
T ss_pred             hhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCC-----CCHHHHHHHHHh----CCCCEE
Confidence            333 45555 56667655432222100000    00001      11223332     189999999976    344789


Q ss_pred             EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----hhhcccCCeE--EEecccccCc-ceeEEeecC
Q psy5413         207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----AEVCASVDTV--MFCLSKGLGA-PVGSILAGP  279 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----~~~~~~~dv~--~~s~sK~l~~-p~gg~~~~~  279 (285)
                      +|+++++++++|....+.+++++|+++|++||++||+||+|+++    ....+..++.  +.++||++++ .+.|+++++
T Consensus       202 ~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t~sK~~~~G~~~G~~~~~  281 (427)
T 3fq8_A          202 GVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGK  281 (427)
T ss_dssp             EEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHTTCCCSEEEECGGGGTTSSCEEEEEC
T ss_pred             EEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhcCCCCChhhhhhhhhCCcceEEEEEc
Confidence            99999999988555666888999999999999999999999854    1111222222  5688899986 445667777


Q ss_pred             ccccc
Q psy5413         280 EEFIQ  284 (285)
Q Consensus       280 ~~~i~  284 (285)
                      +++++
T Consensus       282 ~~~~~  286 (427)
T 3fq8_A          282 REIMQ  286 (427)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            77665

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.89  E-value=1.3e-22  Score=185.78  Aligned_cols=215  Identities=11%  Similarity=0.077  Sum_probs=143.2

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccC--CC--CccCChhHHHHHHHHHhHcC---CCcEEEcCChHHHHHHHH
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVG--DD--VYLEDPTCKELQEKAAKLAG---KEAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~--~~--~y~~~~~~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~al  133 (285)
                      |++|+||.++    +.++.||+|.+|+.+++..  +.  .+.+.+...+|.++|+++..   .+.++|++|||+|++.|+
T Consensus        63 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~Al  142 (456)
T 4atq_A           63 GNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAV  142 (456)
T ss_dssp             SCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHH
T ss_pred             CCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHH
Confidence            5666666433    4577999999999987653  22  22345667889999999974   446799999999999999


Q ss_pred             HHccccCCCe-EEe-cCCcceeeecccccccc-ccccccc---ceeeeeeecCC------CCCCCHHHHHHHhcccc-cc
Q psy5413         134 MTHCDRRDSE-IIV-GDCSHIMLWEQGGASQT-SVYSQIG---RVLMRGVTNQK------DGTFDLDEMEAKFSTAD-NI  200 (285)
Q Consensus       134 ~~~~~~~g~~-vi~-~~~~h~~~~~~~~~~~~-~~~~~~~---g~~~~~~~~~~------~~~~d~~~l~~~i~~~~-~~  200 (285)
                      +++...+++. |+. ...||+.+.....+... ..+...+   ...+..+|...      ....+.+.+++.++... ..
T Consensus       143 klAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  222 (456)
T 4atq_A          143 KVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQI  222 (456)
T ss_dssp             HHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHT
T ss_pred             HHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhh
Confidence            9998666654 333 57889877543222211 1121111   12233333211      11123444444432210 11


Q ss_pred             cCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc--c
Q psy5413         201 HCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA--P  271 (285)
Q Consensus       201 ~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~--p  271 (285)
                      +++++++|++|++++..|....|++++++|+++|++||++||+||+++++     ....++.++.  +.+++|.+++  |
T Consensus       223 ~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggg~P  302 (456)
T 4atq_A          223 GGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAGGLP  302 (456)
T ss_dssp             CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSS
T ss_pred             cCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhhhcccCcCC
Confidence            34489999999999988666677899999999999999999999998843     3444566665  6777899988  8


Q ss_pred             eeEEeecC
Q psy5413         272 VGSILAGP  279 (285)
Q Consensus       272 ~gg~~~~~  279 (285)
                      +|+++..+
T Consensus       303 ~~av~~~~  310 (456)
T 4atq_A          303 LSAITGRA  310 (456)
T ss_dssp             CEEEEEEH
T ss_pred             ceeeEecH
Confidence            88766553

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.89  E-value=2.1e-22  Score=181.70  Aligned_cols=198  Identities=14%  Similarity=0.053  Sum_probs=150.5

Q ss_pred             eeeccCCcCCCcHHHHHHHHhcccCC-----CCcc----CChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHc-
Q psy5413          69 VDIRSDTISKPTMEMKNYMFNCEVGD-----DVYL----EDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTH-  136 (285)
Q Consensus        69 ~~~~~~~~~~~~~~v~~a~~~~~~~~-----~~y~----~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~-  136 (285)
                      +.|........++++.+++.+.....     ..|.    ..+...++++.+++++|.+  .+++++||++++..+++++ 
T Consensus        28 ~~ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~  107 (406)
T 3cai_A           28 VHFDAPAGMLIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASS  107 (406)
T ss_dssp             EECBGGGCCCCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTG
T ss_pred             EEEeCCCcCCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHh
Confidence            44444444567889999988765421     1232    2456889999999999976  5789999999999999876 


Q ss_pred             -cccCCCeEEecCCcceeeecccc-cccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         137 -CDRRDSEIIVGDCSHIMLWEQGG-ASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       137 -~~~~g~~vi~~~~~h~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                       ..++|++|+++.+.|........ +.      ...|.+++.++.+ +++.+|+++|++++++       ++++|+++++
T Consensus       108 ~~~~~gd~vi~~~~~~~~~~~~~~~~~------~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~-------~~~~v~~~~~  174 (406)
T 3cai_A          108 SRAGLGYEVIVSRLDDEANIAPWLRAA------HRYGAKVKWAEVDIETGELPTWQWESLISK-------STRLVAVNSA  174 (406)
T ss_dssp             GGGBTTCEEEEETTSCGGGTHHHHHHH------HHHBCEEEEECCCTTTCCCCGGGHHHHCCT-------TEEEEEEESB
T ss_pred             hccCCCCEEEEcCCccHHHHHHHHHHH------HhcCCeEEEEecCcccCCcCHHHHHHHhCC-------CceEEEEeCC
Confidence             12589999998888765432111 11      1247788888876 5677899999999977       7999999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCcceeE-EeecCccccc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPVGS-ILAGPEEFIQ  284 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~gg-~~~~~~~~i~  284 (285)
                      +|++ |.++|   +++|.++|+++|+++|+||+|+ +   ......+.|+++.|+||++|+. +| +++.++++++
T Consensus       175 ~npt-G~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~g~~-~G~~~~~~~~~~~  245 (406)
T 3cai_A          175 SGTL-GGVTD---LRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGPP-IGAMVFRDPSVMN  245 (406)
T ss_dssp             CTTT-CBBCC---CHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGGTSCS-CEEEEESCHHHHH
T ss_pred             cCCc-cccCC---HHHHHHHHHHcCCEEEEEcccccCCCCCCchhcCCCEEEeehhhhcCCC-cCeEEEEehHHHh
Confidence            9999 89999   8999999999999999999987 2   1111236899999999988754 66 8888877653

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.89  E-value=4.5e-22  Score=179.18  Aligned_cols=206  Identities=13%  Similarity=0.080  Sum_probs=144.8

Q ss_pred             CCeeeeeccCC----cCCCcHHHHHHHHhcccCC-C--CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcc
Q psy5413          65 NIRTVDIRSDT----ISKPTMEMKNYMFNCEVGD-D--VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        65 ~~~~~~~~~~~----~~~~~~~v~~a~~~~~~~~-~--~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~  137 (285)
                      |++++||.++.    .++++|++.+++.++.... .  ....++...++++.+++++|.+.+++++||++|++.+++++.
T Consensus        35 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~ea~~~al~~~~  114 (395)
T 3nx3_A           35 AKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAMKTAR  114 (395)
T ss_dssp             CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH
T ss_pred             CCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHH
Confidence            56788887652    3347899999998876532 1  123567899999999999998889999999999999999876


Q ss_pred             cc------CCCeEEec-CCcceeeecccccccccccc---cccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEE
Q psy5413         138 DR------RDSEIIVG-DCSHIMLWEQGGASQTSVYS---QIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       138 ~~------~g~~vi~~-~~~h~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                      ..      .+++|++. ..+|.+............+.   ...+..+..++.     .|+++|++++++       ++++
T Consensus       115 ~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~-------~~~~  182 (395)
T 3nx3_A          115 KYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-----NDISSVEKLVNE-------KTCA  182 (395)
T ss_dssp             HHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-----TCHHHHHTTCCT-------TEEE
T ss_pred             HHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-----CCHHHHHHhccC-------CeEE
Confidence            42      35667664 55566543322222111111   011223334443     289999999976       8999


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----hcccCCe--EEEecccccCc-ceeEEeecC
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE-----VCASVDT--VMFCLSKGLGA-PVGSILAGP  279 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----~~~~~dv--~~~s~sK~l~~-p~gg~~~~~  279 (285)
                      |++++++|++|+...+.+++++|+++|++||++||+||+|+++..     .....++  -+.++||++++ .+.|+++.+
T Consensus       183 v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~~~G~~~~~  262 (395)
T 3nx3_A          183 IILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGLSVGAFVIN  262 (395)
T ss_dssp             EEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGTTTSCCEEEEEC
T ss_pred             EEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEEecccccCCCceEEEEEc
Confidence            999999999877789999999999999999999999999884321     1122222  25678899876 445566666


Q ss_pred             ccc
Q psy5413         280 EEF  282 (285)
Q Consensus       280 ~~~  282 (285)
                      +++
T Consensus       263 ~~~  265 (395)
T 3nx3_A          263 QKV  265 (395)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            665

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.89  E-value=1.4e-22  Score=183.06  Aligned_cols=206  Identities=16%  Similarity=0.110  Sum_probs=151.4

Q ss_pred             CCeeeeeccCCcCC---CcHHHHHHHHhcccC----CCCccCChhHHHHHHHHHhHc----C----CCcEEEcCChHHHH
Q psy5413          65 NIRTVDIRSDTISK---PTMEMKNYMFNCEVG----DDVYLEDPTCKELQEKAAKLA----G----KEAAIFVPSGTMGN  129 (285)
Q Consensus        65 ~~~~~~~~~~~~~~---~~~~v~~a~~~~~~~----~~~y~~~~~~~~l~~~la~~~----g----~~~~~~~~~Gs~a~  129 (285)
                      |+.++||.++.+..   +++++.+++.++...    .. |+......++++.+++++    |    .+.+++++||++|+
T Consensus        33 g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~  111 (407)
T 2zc0_A           33 GVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGAL  111 (407)
T ss_dssp             SCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHH
T ss_pred             CCceEeCCCCCCCchhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHH
Confidence            45789998766542   677899988776542    23 665556789999999998    7    24568999999999


Q ss_pred             HHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEE-
Q psy5413         130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLV-  208 (285)
Q Consensus       130 ~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v-  208 (285)
                      ..++++++ ++|++|++..++|.......         ...|.+++.++.++++ +|+++|+++++.... .+.++++| 
T Consensus       112 ~~~~~~~~-~~gd~vl~~~p~~~~~~~~~---------~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~-~~~~~~~v~  179 (407)
T 2zc0_A          112 DLLGRVLI-DPGDVVITENPSYINTLLAF---------EQLGAKIEGVPVDNDG-MRVDLLEEKIKELKA-KGQKVKLIY  179 (407)
T ss_dssp             HHHHHHHC-CTTCEEEEEESCCHHHHHHH---------HTTTCEEEEEEEETTE-ECHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             HHHHHHhc-CCCCEEEEeCCChHHHHHHH---------HHcCCEEEEcccCCCC-CCHHHHHHHHHhhhc-ccCCceEEE
Confidence            99999987 58999998877765443321         2347788888875544 899999999971000 01267887 


Q ss_pred             EEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc--c--cCCeEEEecccccCc-ceeEEe
Q psy5413         209 CVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC--A--SVDTVMFCLSKGLGA-PVGSIL  276 (285)
Q Consensus       209 ~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~--~--~~dv~~~s~sK~l~~-p~gg~~  276 (285)
                      ++++++||+ |.++|.+++++|+++|++||+++|+||+|..+.       .+.  .  +.++++.|+||+++. .++|++
T Consensus       180 ~~~~~~npt-G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~  258 (407)
T 2zc0_A          180 TIPTGQNPM-GVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTGFRIGWI  258 (407)
T ss_dssp             ECCSSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCTTSCCEEE
T ss_pred             ECCCCCCCC-CcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCCCcceEEE
Confidence            467899999 899999999999999999999999999988321       111  1  122458999999984 357788


Q ss_pred             ecCccccc
Q psy5413         277 AGPEEFIQ  284 (285)
Q Consensus       277 ~~~~~~i~  284 (285)
                      +.++++++
T Consensus       259 ~~~~~~~~  266 (407)
T 2zc0_A          259 IAEGEILK  266 (407)
T ss_dssp             ECCHHHHH
T ss_pred             ecCHHHHH
Confidence            88777653

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.89  E-value=1.7e-22  Score=185.18  Aligned_cols=232  Identities=13%  Similarity=0.100  Sum_probs=146.4

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccC----CcCCCcHHHHHHHHhcccCCC----Ccc
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSD----TISKPTMEMKNYMFNCEVGDD----VYL   98 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~----~y~   98 (285)
                      |..++++.+.+.|+..                      |++++||.++    +.++.+|++.+++.+++....    ...
T Consensus        27 p~~~~~g~G~~v~d~~----------------------g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~   84 (448)
T 3dod_A           27 PLIIESGTGIKVKDIN----------------------GKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGM   84 (448)
T ss_dssp             CCEEEEEEBTEEEETT----------------------SCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCSSS
T ss_pred             CceEEEeeeCEEEECC----------------------CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccccc
Confidence            5556666666666643                      4566776653    345678999999998776421    223


Q ss_pred             CChhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc---CC----CeEEec-CCcceeeeccccccccccccc
Q psy5413          99 EDPTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR---RD----SEIIVG-DCSHIMLWEQGGASQTSVYSQ  168 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~---~g----~~vi~~-~~~h~~~~~~~~~~~~~~~~~  168 (285)
                      ..+...++++.++++++  .+.++|++||++|++.|+++++..   +|    ++|++. ..||+++.....+.....+..
T Consensus        85 ~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~  164 (448)
T 3dod_A           85 TNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHH  164 (448)
T ss_dssp             EEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC---------------------
T ss_pred             CCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccc
Confidence            45678899999999984  467899999999999999998753   55    677764 556766543222221111111


Q ss_pred             cc---ceeeeeeecCCCCC-----------CCHHHHHHHhcccccccCCceEEEEEeccc-CCCCeeeCCHHHHHHHHHH
Q psy5413         169 IG---RVLMRGVTNQKDGT-----------FDLDEMEAKFSTADNIHCASTSLVCVENTH-NYCGGTVLPMQWLRELKAR  233 (285)
Q Consensus       169 ~~---g~~~~~~~~~~~~~-----------~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~-n~~gG~~~~~~~l~~i~~l  233 (285)
                      .+   ...+..++.+..+.           .|+++|+++|+.    +.+++++|++++++ |++|+.+.+.+++++|+++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~----~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l  240 (448)
T 3dod_A          165 VYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEE----HHEEIAALSIESMVQGASGMIVMPEGYLAGVREL  240 (448)
T ss_dssp             --------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHH----HGGGEEEEEEESSEESTTTCEECCTTHHHHHHHH
T ss_pred             cccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHh----CCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHH
Confidence            11   11233344322221           258999999973    22378999999998 8886788899999999999


Q ss_pred             HHHcCCeEEEeCccCChh-----hhcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413         234 CQEHNIPVHMDGARLPLA-----EVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       234 a~~~gi~li~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      |++||++||+||+|+++.     ......++.  +.+++|++++  ...|++++++++++
T Consensus       241 ~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~  300 (448)
T 3dod_A          241 CTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYK  300 (448)
T ss_dssp             HHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHH
T ss_pred             HHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHH
Confidence            999999999999988432     122222322  5678899875  14456666666654

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.88  E-value=2.7e-22  Score=178.96  Aligned_cols=192  Identities=13%  Similarity=0.079  Sum_probs=148.1

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~~~al~  134 (285)
                      |+.+++|..+.+.. .++.+.+++.+.... ...|+......++++.++++++        .+.+++++||++|+..+++
T Consensus        28 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~  107 (370)
T 2z61_A           28 GKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALS  107 (370)
T ss_dssp             TCCCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHH
T ss_pred             CCCEEEccCCCCCCCCCHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHH
Confidence            46778998877764 567899998877653 3456655567889999999874        2457999999999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      +++ ++|++|++.+++|.......         ...|.+++.++      +|+++|++++++       ++++|++++|+
T Consensus       108 ~~~-~~gd~vl~~~p~~~~~~~~~---------~~~g~~~~~v~------~d~~~l~~~l~~-------~~~~v~~~~p~  164 (370)
T 2z61_A          108 SII-DDGDEVLIQNPCYPCYKNFI---------RFLGAKPVFCD------FTVESLEEALSD-------KTKAIIINSPS  164 (370)
T ss_dssp             HHC-CTTCEEEEESSCCTHHHHHH---------HHTTCEEEEEC------SSHHHHHHHCCS-------SEEEEEEESSC
T ss_pred             Hhc-CCCCEEEEeCCCchhHHHHH---------HHcCCEEEEeC------CCHHHHHHhccc-------CceEEEEcCCC
Confidence            986 68999999888775543321         23477777776      599999999976       78999999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------hhc-----ccCCeEEEecccccCc--ceeEEeecCcc
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------EVC-----ASVDTVMFCLSKGLGA--PVGSILAGPEE  281 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~-----~~~dv~~~s~sK~l~~--p~gg~~~~~~~  281 (285)
                      ||+ |.++|   ++ |+++|++||+++|+||+|....      .+.     .+.|+++.|+||+++.  .+.|+++++++
T Consensus       165 npt-G~~~~---~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~  239 (370)
T 2z61_A          165 NPL-GEVID---RE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDE  239 (370)
T ss_dssp             TTT-CCCCC---HH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHH
T ss_pred             CCc-CcccC---HH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECHH
Confidence            999 89999   45 9999999999999999988221      111     2446779999999974  45678888777


Q ss_pred             ccc
Q psy5413         282 FIQ  284 (285)
Q Consensus       282 ~i~  284 (285)
                      +++
T Consensus       240 ~~~  242 (370)
T 2z61_A          240 IIE  242 (370)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.88  E-value=4.7e-22  Score=181.39  Aligned_cols=197  Identities=17%  Similarity=0.186  Sum_probs=152.9

Q ss_pred             CcHHHHHHHHhcccC------CCCcc-CChhHHHHHHHHHhHcCCCcEEE---cCChHHHHHHHHHHccccCCCeEEecC
Q psy5413          79 PTMEMKNYMFNCEVG------DDVYL-EDPTCKELQEKAAKLAGKEAAIF---VPSGTMGNLIAIMTHCDRRDSEIIVGD  148 (285)
Q Consensus        79 ~~~~v~~a~~~~~~~------~~~y~-~~~~~~~l~~~la~~~g~~~~~~---~~~Gs~a~~~al~~~~~~~g~~vi~~~  148 (285)
                      .++++++++.+...+      ...|. .++...++++.+++++|.+..++   ++||++|+..++.+++ ++||+|++..
T Consensus        36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~-~~Gd~Vl~~~  114 (431)
T 3ht4_A           36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGIL-RPGDELLYIT  114 (431)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTC-CTTCEEEECS
T ss_pred             HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhC-CCCCEEEEeC
Confidence            367888888775432      12222 34668899999999999987754   6799999999999877 6999999887


Q ss_pred             -Ccceeeecccccccc-cccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec-ccCCCCeeeCCHH
Q psy5413         149 -CSHIMLWEQGGASQT-SVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN-THNYCGGTVLPMQ  225 (285)
Q Consensus       149 -~~h~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~-~~n~~gG~~~~~~  225 (285)
                       +.|..+.....+..+ .......|.+++.++.++++.+|+++|++++++       ++++|++++ ++|++ |...+.+
T Consensus       115 ~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~-------~tk~V~i~~sp~np~-~~~~~~~  186 (431)
T 3ht4_A          115 GKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHS-------NTKMIGIQRSKGYAT-RPSFTIS  186 (431)
T ss_dssp             SSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCT-------TEEEEEEECSCTTSS-SCCCCHH
T ss_pred             CCCchhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCC-------CCeEEEEECCCCCCC-CCcCCHH
Confidence             666554432211000 000134688999999877888999999999987       899999995 88888 8889999


Q ss_pred             HHHHHHHHHHH--cCCeEEEeCccCChh----hhcccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413         226 WLRELKARCQE--HNIPVHMDGARLPLA----EVCASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ  284 (285)
Q Consensus       226 ~l~~i~~la~~--~gi~li~Dea~~~~~----~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~  284 (285)
                      ++++|+++|++  +|+++|+||+|+...    ....++|+++.|++|++++   +.||++++++++++
T Consensus       187 ~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~  254 (431)
T 3ht4_A          187 QIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVE  254 (431)
T ss_dssp             HHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGGGTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHH
T ss_pred             HHHHHHHHHHhhCCCCEEEEeCCChhhccCCCccccCCeEEEcCccccCCCCCCCceEEEEecHHHHH
Confidence            99999999999  999999999988332    2334689999999999887   78899999887764

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.88  E-value=1.8e-22  Score=180.28  Aligned_cols=188  Identities=12%  Similarity=0.000  Sum_probs=143.2

Q ss_pred             cCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC---cE-EEcCChHHHHHHHHHHccccCCCeEEecCC-c
Q psy5413          76 ISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE---AA-IFVPSGTMGNLIAIMTHCDRRDSEIIVGDC-S  150 (285)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~---~~-~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~-~  150 (285)
                      +...++++++++.++...+......+...++++.+++++|.+   .. ++++||++|++.++++++ ++||+|++..+ +
T Consensus        27 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~-~~gd~vi~~~~~~  105 (376)
T 3f0h_A           27 PVMSSEEVRAIGAEQVPYFRTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF-TKKDKVLVIDGGS  105 (376)
T ss_dssp             SCCCCHHHHHHHTSCCCCCSSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC-CTTCCEEEEESSH
T ss_pred             CCCCcHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc-CCCCeEEEEeCCh
Confidence            456789999999887654322222355788999999999875   34 458889999999999987 68999888765 3


Q ss_pred             ceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHH
Q psy5413         151 HIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLREL  230 (285)
Q Consensus       151 h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i  230 (285)
                      |...  .....      ...|.+++.++.++++.+|++++++++++       ++++|++++++|++ |.++|   +++|
T Consensus       106 ~~~~--~~~~~------~~~g~~~~~v~~~~~~~~d~~~l~~~~~~-------~~~~v~~~~~~npt-G~~~~---l~~i  166 (376)
T 3f0h_A          106 FGHR--FVQLC------EIHEIPYVALKLEHGKKLTKEKLYEYDNQ-------NFTGLLVNVDETST-AVLYD---TMMI  166 (376)
T ss_dssp             HHHH--HHHHH------HHTTCCEEEEECCTTCCCCHHHHHTTTTS-------CCCEEEEESEETTT-TEECC---HHHH
T ss_pred             hhHH--HHHHH------HHcCCceEEEeCCCCCCCCHHHHHHhhcc-------CceEEEEecccCCc-ceecC---HHHH
Confidence            3321  11122      34577888888867778999999998866       78999999999999 89999   9999


Q ss_pred             HHHHHHcCCeEEEeCccCChh---hh-cccCCeEEEecccccCc-ceeEEeecCcccc
Q psy5413         231 KARCQEHNIPVHMDGARLPLA---EV-CASVDTVMFCLSKGLGA-PVGSILAGPEEFI  283 (285)
Q Consensus       231 ~~la~~~gi~li~Dea~~~~~---~~-~~~~dv~~~s~sK~l~~-p~gg~~~~~~~~i  283 (285)
                      +++|++||+++|+|++++...   .. ..++|+++.++||++++ +-.|+++.+++++
T Consensus       167 ~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~  224 (376)
T 3f0h_A          167 GEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGV  224 (376)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHH
T ss_pred             HHHHHHcCCEEEEEcCccccCccccccccCccEEEecCcccccCCCceEEEEECHHHH
Confidence            999999999999999988221   11 23579999999999995 3346677776654

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.88  E-value=4.2e-22  Score=182.30  Aligned_cols=207  Identities=14%  Similarity=0.063  Sum_probs=144.8

Q ss_pred             cCCeeeeeccCCc----CCCcHHHHHHHHhcccCCC----CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHH
Q psy5413          64 VNIRTVDIRSDTI----SKPTMEMKNYMFNCEVGDD----VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMT  135 (285)
Q Consensus        64 ~~~~~~~~~~~~~----~~~~~~v~~a~~~~~~~~~----~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~  135 (285)
                      .|++++||.++..    ++++|++.+++.++.....    .| ..+...++++.+++++|.+.+++++||++|++.++++
T Consensus        74 ~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~  152 (439)
T 2oat_A           74 EGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAF-YNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKL  152 (439)
T ss_dssp             TCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCTTS-EESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHH
T ss_pred             CCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccCcc-CCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHH
Confidence            3678899987532    3489999999988775321    23 3456899999999999988899999999999999998


Q ss_pred             ccc--------cCC-CeEEec-CCcceeeecccccccccccccccc---eeeeeeecCCCCCCCHHHHHHHhcccccccC
Q psy5413         136 HCD--------RRD-SEIIVG-DCSHIMLWEQGGASQTSVYSQIGR---VLMRGVTNQKDGTFDLDEMEAKFSTADNIHC  202 (285)
Q Consensus       136 ~~~--------~~g-~~vi~~-~~~h~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~  202 (285)
                      ++.        .+| ++|++. ..+|..+.........+.+...++   ..++.++.     .|+++|+++|+..     
T Consensus       153 ~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-----~d~~~le~~l~~~-----  222 (439)
T 2oat_A          153 ARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-----NDLPALERALQDP-----  222 (439)
T ss_dssp             HHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-----SCHHHHHHHTTST-----
T ss_pred             HHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-----CCHHHHHHHhCCC-----
Confidence            752        245 667765 466766543222220000101111   23344443     2899999999521     


Q ss_pred             CceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----hcc----cCCeEEEecccccCcc--
Q psy5413         203 ASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE-----VCA----SVDTVMFCLSKGLGAP--  271 (285)
Q Consensus       203 ~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----~~~----~~dv~~~s~sK~l~~p--  271 (285)
                       ++++|+++++++++|..+++.+++++|+++|++||++||+||+|+++..     ..+    ..|+  .|++|++++.  
T Consensus       223 -~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di--~t~sK~l~~G~~  299 (439)
T 2oat_A          223 -NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDI--VLLGKALSGGLY  299 (439)
T ss_dssp             -TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSE--EEECGGGGTTSS
T ss_pred             -CEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcE--EEecccccCCCC
Confidence             7899999999888733567889999999999999999999999984321     111    2354  4888999873  


Q ss_pred             eeEEeecCccccc
Q psy5413         272 VGSILAGPEEFIQ  284 (285)
Q Consensus       272 ~gg~~~~~~~~i~  284 (285)
                      .+|++++++++++
T Consensus       300 ~~G~v~~~~~~~~  312 (439)
T 2oat_A          300 PVSAVLCDDDIML  312 (439)
T ss_dssp             CCEEEEECHHHHT
T ss_pred             CeEEEEECHHHHh
Confidence            4667777777654

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.88  E-value=5.1e-22  Score=180.93  Aligned_cols=211  Identities=15%  Similarity=0.080  Sum_probs=138.2

Q ss_pred             CCeeeeeccCC----cCCCcHHHHHHHHhcccCCCC-ccCChhHHHHHHHHHhHc-CCCcEEEcCChHHHHHHHHHHccc
Q psy5413          65 NIRTVDIRSDT----ISKPTMEMKNYMFNCEVGDDV-YLEDPTCKELQEKAAKLA-GKEAAIFVPSGTMGNLIAIMTHCD  138 (285)
Q Consensus        65 ~~~~~~~~~~~----~~~~~~~v~~a~~~~~~~~~~-y~~~~~~~~l~~~la~~~-g~~~~~~~~~Gs~a~~~al~~~~~  138 (285)
                      |++++||.++.    .++.+|++.+++.+++..... ..+++...++++.+++++ +.+.++|++||++|++.+++++..
T Consensus        52 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~  131 (429)
T 4e77_A           52 GKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARG  131 (429)
T ss_dssp             CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHH
Confidence            56777776553    245799999999988764322 235678899999999998 567789999999999999997653


Q ss_pred             cC-CCeEEe-cCCcceeeeccccccc-------ccccc---cccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceE
Q psy5413         139 RR-DSEIIV-GDCSHIMLWEQGGASQ-------TSVYS---QIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       139 ~~-g~~vi~-~~~~h~~~~~~~~~~~-------~~~~~---~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                      .+ ++.|++ ...+|+.+........       .+...   ......+..++.     .|+++|++++++    +.++++
T Consensus       132 ~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~----~~~~~~  202 (429)
T 4e77_A          132 YTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTY-----NDLASVRQAFEQ----YPQEVA  202 (429)
T ss_dssp             HHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECT-----TCHHHHHHHHHH----STTTEE
T ss_pred             hhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCC-----CCHHHHHHHHHh----cCCCEE
Confidence            22 344554 5677776642221110       00000   001111222222     289999999975    234789


Q ss_pred             EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----hhhcccCCeE--EEecccccCc-ceeEEeecC
Q psy5413         207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----AEVCASVDTV--MFCLSKGLGA-PVGSILAGP  279 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----~~~~~~~dv~--~~s~sK~l~~-p~gg~~~~~  279 (285)
                      +|+++++++.+|....+.+++++|+++|++||++||+||+|+++    ....+..++.  +.|+||++++ ..+|+++++
T Consensus       203 ~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~~~~~~~~~~~pdi~t~sK~~~~G~~~G~~~~~  282 (429)
T 4e77_A          203 CIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYHVIPDLTCLGKIIGGGMPVGAFGGR  282 (429)
T ss_dssp             EEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBTTCHHHHTTCCCSEEEEEGGGGTTSCCEEEEEC
T ss_pred             EEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCcchHHHhcCCCCCeeeecccccCCCCeEEEEEC
Confidence            99999888877455556889999999999999999999999844    1111222221  4688899986 345567777


Q ss_pred             ccccc
Q psy5413         280 EEFIQ  284 (285)
Q Consensus       280 ~~~i~  284 (285)
                      +++++
T Consensus       283 ~~~~~  287 (429)
T 4e77_A          283 REVMN  287 (429)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            77664

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.88  E-value=1.3e-22  Score=186.08  Aligned_cols=207  Identities=12%  Similarity=0.058  Sum_probs=154.7

Q ss_pred             CCeeeeeccCCcCC---CcHHHHHHHHhcccCC----CCccCChhHHHHHHHHHhHc----CC---CcEEEcCChHHHHH
Q psy5413          65 NIRTVDIRSDTISK---PTMEMKNYMFNCEVGD----DVYLEDPTCKELQEKAAKLA----GK---EAAIFVPSGTMGNL  130 (285)
Q Consensus        65 ~~~~~~~~~~~~~~---~~~~v~~a~~~~~~~~----~~y~~~~~~~~l~~~la~~~----g~---~~~~~~~~Gs~a~~  130 (285)
                      ++.+++|..+.+..   +++++.+++.+.+...    ..|+..+...+|++.+++++    |.   +.+++++||++|+.
T Consensus        75 ~~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~  154 (448)
T 3aow_A           75 TSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALD  154 (448)
T ss_dssp             TSSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHH
T ss_pred             CCCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHH
Confidence            35689998877653   6778999888765432    35666566889999999998    75   45799999999999


Q ss_pred             HHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEE-
Q psy5413         131 IAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVC-  209 (285)
Q Consensus       131 ~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~-  209 (285)
                      .++++++ ++||+|++..++|......   .      ...|.+++.++.++++ +|+++|+++++.. .....++++|+ 
T Consensus       155 ~~~~~l~-~~Gd~Vlv~~p~y~~~~~~---~------~~~g~~~~~v~~~~~g-~d~~~L~~~l~~~-~~~~~~~k~v~~  222 (448)
T 3aow_A          155 LIGRVFL-NPGDIVVVEAPTYLAALQA---F------NFYEPQYIQIPLDDEG-MKVEILEEKLKEL-KSQGKKVKVVYT  222 (448)
T ss_dssp             HHHHHHC-CTTCEEEEEESCCHHHHHH---H------HTTCCEEEEEEEETTE-ECHHHHHHHHHHH-HHTTCCEEEEEE
T ss_pred             HHHHHHc-CCCCEEEEeCCChHHHHHH---H------HHcCCEEEEeccCCCC-CCHHHHHHHHhhh-hccCCCCeEEEE
Confidence            9999987 5899999988776544331   1      2348888888875544 8999999999710 00012688885 


Q ss_pred             EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhc-ccCCeEEEecccccCc-ceeEEee
Q psy5413         210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVC-ASVDTVMFCLSKGLGA-PVGSILA  277 (285)
Q Consensus       210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~-~~~dv~~~s~sK~l~~-p~gg~~~  277 (285)
                      +++++||| |.+++.+++++|+++|++||+++|+||+|..+.          .+. .+.++++.|+||+++. .+.|+++
T Consensus       223 ~~~~~NPt-G~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~~GlriG~v~  301 (448)
T 3aow_A          223 VPTFQNPA-GVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAPGFRIGWMV  301 (448)
T ss_dssp             CCSSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTCGGGCCEEEE
T ss_pred             CCCCCCCc-CCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhccccccEEEEE
Confidence            57799999 899999999999999999999999999987321          111 1234559999999984 4567888


Q ss_pred             cCccccc
Q psy5413         278 GPEEFIQ  284 (285)
Q Consensus       278 ~~~~~i~  284 (285)
                      +++++++
T Consensus       302 ~~~~l~~  308 (448)
T 3aow_A          302 GDPGIIR  308 (448)
T ss_dssp             ECHHHHH
T ss_pred             eCHHHHH
Confidence            8777654

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.88  E-value=3.3e-22  Score=182.67  Aligned_cols=217  Identities=18%  Similarity=0.136  Sum_probs=143.8

Q ss_pred             CCeeeeeccCCc----CCCcHHHHHHHHhcccCCC----CccCChhHHHHHHHHHhHc--CC-CcEEEcCChHHHHHHHH
Q psy5413          65 NIRTVDIRSDTI----SKPTMEMKNYMFNCEVGDD----VYLEDPTCKELQEKAAKLA--GK-EAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        65 ~~~~~~~~~~~~----~~~~~~v~~a~~~~~~~~~----~y~~~~~~~~l~~~la~~~--g~-~~~~~~~~Gs~a~~~al  133 (285)
                      |++++||.++.+    ++.+|++.+++.+++....    ..+..+...++++.+++++  +. +.++|++||++|++.++
T Consensus        42 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al  121 (439)
T 3dxv_A           42 GRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAY  121 (439)
T ss_dssp             SCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHH
T ss_pred             CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHH
Confidence            677889887665    3378999999988765432    2235677899999999998  55 57899999999999999


Q ss_pred             HHccc-cCCCeEEe-cCCcceeeecccccccccc--ccccc---ceeeeeeecCCCCCC-----CHHHHHHHhccccccc
Q psy5413         134 MTHCD-RRDSEIIV-GDCSHIMLWEQGGASQTSV--YSQIG---RVLMRGVTNQKDGTF-----DLDEMEAKFSTADNIH  201 (285)
Q Consensus       134 ~~~~~-~~g~~vi~-~~~~h~~~~~~~~~~~~~~--~~~~~---g~~~~~~~~~~~~~~-----d~~~l~~~i~~~~~~~  201 (285)
                      +++.. ..++.|++ ...+|.++.....+.....  |...+   ...+..++.+..+..     |+++|++++++.   +
T Consensus       122 ~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~  198 (439)
T 3dxv_A          122 RAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAV---P  198 (439)
T ss_dssp             HHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTS---C
T ss_pred             HHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhc---C
Confidence            98632 13445554 6677776643322220000  11111   111233333222222     799999999410   2


Q ss_pred             CCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCCeE--EEecccccCc-cee
Q psy5413         202 CASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVDTV--MFCLSKGLGA-PVG  273 (285)
Q Consensus       202 ~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~-p~g  273 (285)
                      .+++++|++++++|++|+...+.+++++|+++|++||++||+||+|+++.     ...+..++.  +.|+||++++ .+.
T Consensus       199 ~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~s~sK~~~~G~ri  278 (439)
T 3dxv_A          199 AGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVLGKGLGGGLPL  278 (439)
T ss_dssp             TTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEEEECGGGGTTSCC
T ss_pred             CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEEEEcchhcCCcce
Confidence            33799999999999986666778889999999999999999999998431     111222221  4488999987 445


Q ss_pred             EEeecCccccc
Q psy5413         274 SILAGPEEFIQ  284 (285)
Q Consensus       274 g~~~~~~~~i~  284 (285)
                      |++++++++++
T Consensus       279 G~~~~~~~~~~  289 (439)
T 3dxv_A          279 SAVIAPAEILD  289 (439)
T ss_dssp             EEEEEEHHHHT
T ss_pred             EEEEECHHHHh
Confidence            67777777654

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.88  E-value=8.2e-23  Score=183.12  Aligned_cols=191  Identities=12%  Similarity=0.063  Sum_probs=146.3

Q ss_pred             CcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC---cEEEcCChHHHHHHHHHHccccCCCeEEecCCcc
Q psy5413          75 TISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE---AAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSH  151 (285)
Q Consensus        75 ~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~---~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h  151 (285)
                      .+...++++.+++.++..++..+...+...++++.++++++.+   .+++++||++|+..++++++ ++||+|++....|
T Consensus        30 ~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~-~~gd~vl~~~~~~  108 (393)
T 3kgw_A           30 GPSNLAPRVLAAGSLRMIGHMQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL-EPGDSFLTGTNGI  108 (393)
T ss_dssp             SCCCCCHHHHHHTTCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC-CTTCEEEEEESSH
T ss_pred             CCCCCCHHHHHHhcccccCcccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC-CCCCEEEEEeCCc
Confidence            4466789999999876554332223456789999999999875   35899999999999999986 6899999876555


Q ss_pred             eeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHH
Q psy5413         152 IMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELK  231 (285)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~  231 (285)
                      .... .....      ...|.+++.++.++++.+|+++|+++++++      ++++|++++++||+ |.++|   +++|+
T Consensus       109 ~~~~-~~~~~------~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~~v~~~~~~npt-G~~~~---l~~i~  171 (393)
T 3kgw_A          109 WGMR-AAEIA------DRIGARVHQMIKKPGEHYTLQEVEEGLAQH------KPVLLFLVHGESST-GVVQP---LDGFG  171 (393)
T ss_dssp             HHHH-HHHHH------HHTTCEEEEEECCTTCCCCHHHHHHHHHHH------CCSEEEEESEETTT-TEECC---CTTHH
T ss_pred             hhHH-HHHHH------HHcCCceEEEeCCCCCCCCHHHHHHHHhhC------CCcEEEEeccCCcc-hhhcc---HHHHH
Confidence            3110 01122      345888888888777789999999999763      68999999999999 89999   99999


Q ss_pred             HHHHHcCCeEEEeCccC-Chhh---hcccCCeEEEecccccCcc-eeEEeecCcccc
Q psy5413         232 ARCQEHNIPVHMDGARL-PLAE---VCASVDTVMFCLSKGLGAP-VGSILAGPEEFI  283 (285)
Q Consensus       232 ~la~~~gi~li~Dea~~-~~~~---~~~~~dv~~~s~sK~l~~p-~gg~~~~~~~~i  283 (285)
                      ++|++||+++|+||+++ +...   ...+.|+++.++||+++++ ..|+++.+++++
T Consensus       172 ~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~  228 (393)
T 3kgw_A          172 ELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAK  228 (393)
T ss_dssp             HHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHH
T ss_pred             HHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccccCCCceeEEEECHHHH
Confidence            99999999999999987 2211   1235789999999998763 346777666654

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.88  E-value=3.8e-22  Score=182.28  Aligned_cols=205  Identities=17%  Similarity=0.119  Sum_probs=137.3

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCCC----CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHc
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGDD----VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~----~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~  136 (285)
                      |++++||.++    ..++++|++.+++.+++....    .| ..+...++++.+++++|.+.++|++||++|++.+++++
T Consensus        64 G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~a  142 (433)
T 1z7d_A           64 DKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAF-FSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLC  142 (433)
T ss_dssp             CCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTS-EEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH
T ss_pred             CCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccCCc-CCHHHHHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHH
Confidence            6778888774    223489999999988775321    23 45678999999999999888999999999999999986


Q ss_pred             cc--------cCC-CeEEecC-Ccceeeecccccccccccccccc---eeeeeeecCCCCCCCHHHHHHHhc-ccccccC
Q psy5413         137 CD--------RRD-SEIIVGD-CSHIMLWEQGGASQTSVYSQIGR---VLMRGVTNQKDGTFDLDEMEAKFS-TADNIHC  202 (285)
Q Consensus       137 ~~--------~~g-~~vi~~~-~~h~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~d~~~l~~~i~-~~~~~~~  202 (285)
                      ..        .+| ++|++.+ .+|.++...........+...++   ..+..+|.     .|+++|+++++ +      
T Consensus       143 ~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-----~d~~~le~~l~~~------  211 (433)
T 1z7d_A          143 RKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-----DDLEALEEELKDP------  211 (433)
T ss_dssp             HHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-----TCHHHHHHHHTST------
T ss_pred             HHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-----CCHHHHHHHhCCC------
Confidence            42        256 7777654 56766543222220011111111   23344443     28999999994 4      


Q ss_pred             CceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----hcc----cCCeEEEecccccCcc--
Q psy5413         203 ASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE-----VCA----SVDTVMFCLSKGLGAP--  271 (285)
Q Consensus       203 ~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----~~~----~~dv~~~s~sK~l~~p--  271 (285)
                       ++++|+++++++++|..+++.+++++|+++|++||++||+||+|+++..     ..+    ..|+  .|++|++++.  
T Consensus       212 -~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di--~t~sK~l~~G~~  288 (433)
T 1z7d_A          212 -NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDV--ILLGKALSGGHY  288 (433)
T ss_dssp             -TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSE--EEECGGGGTTSS
T ss_pred             -CEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCE--EEECccccCCCC
Confidence             7899999999888733457888999999999999999999999984321     112    2354  4888999863  


Q ss_pred             eeEEeecCccccc
Q psy5413         272 VGSILAGPEEFIQ  284 (285)
Q Consensus       272 ~gg~~~~~~~~i~  284 (285)
                      .+|++++++++++
T Consensus       289 ~~G~v~~~~~~~~  301 (433)
T 1z7d_A          289 PISAVLANDDIML  301 (433)
T ss_dssp             CCEEEEECHHHHT
T ss_pred             CeEEEEECHHHHh
Confidence            4667777777664

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.88  E-value=3e-22  Score=182.65  Aligned_cols=156  Identities=21%  Similarity=0.205  Sum_probs=131.9

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccc-cccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGG-ASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|...+|++.+++++|.+.+++++||++|+..++++++ ++||+|+++++.|..+..... ..      ...|.+++.+
T Consensus        80 ~~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~al~-~~Gd~Vi~~~~~y~~~~~~~~~~~------~~~G~~~~~v  152 (430)
T 3ri6_A           80 SNPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLA-RAGDSVVTTDRLFGHTLSLFQKTL------PSFGIEVRFV  152 (430)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHTHH------HHTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHHH------HHcCCEEEEe
Confidence            578899999999999999989999999999999999887 699999998888765443111 11      3458888888


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~  254 (285)
                      +.+     |+++++++|++       ++++|++++|+||+ |.+.|   +++|+++|+++|+++|+|++++..   ....
T Consensus       153 ~~~-----d~~~l~~ai~~-------~t~~v~~e~p~Npt-G~~~d---l~~i~~la~~~g~~livD~a~~~~~~~~~~~  216 (430)
T 3ri6_A          153 DVM-----DSLAVEHACDE-------TTKLLFLETISNPQ-LQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLLEAKR  216 (430)
T ss_dssp             CTT-----CHHHHHHHCCT-------TEEEEEEESSCTTT-CCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTCCGGG
T ss_pred             CCC-----CHHHHHHhhCC-------CCeEEEEECCCCCC-CeecC---HHHHHHHHHHcCCEEEEECCCcccccCChHH
Confidence            764     89999999987       89999999999999 89999   999999999999999999998822   2234


Q ss_pred             ccCCeEEEecccccCcc---eeEEee
Q psy5413         255 ASVDTVMFCLSKGLGAP---VGSILA  277 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~p---~gg~~~  277 (285)
                      .++|+++.|++|+++++   +||+++
T Consensus       217 ~g~div~~S~sK~l~g~g~~~gG~vv  242 (430)
T 3ri6_A          217 LGVDIEVLSSTKFISGGGTSVGGVLI  242 (430)
T ss_dssp             GTCSEEEEECCCEEETTEEECCEEEE
T ss_pred             cCCEEEEECCcccccCCCCceEEEEE
Confidence            57899999999999984   888888

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.88  E-value=3e-22  Score=177.85  Aligned_cols=196  Identities=11%  Similarity=0.017  Sum_probs=148.9

Q ss_pred             CCeeeeeccC-CcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCC--CcEEEcCChHHHHHHHHHHccccCC
Q psy5413          65 NIRTVDIRSD-TISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGK--EAAIFVPSGTMGNLIAIMTHCDRRD  141 (285)
Q Consensus        65 ~~~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~--~~~~~~~~Gs~a~~~al~~~~~~~g  141 (285)
                      +++++||.++ ++..++|++.+++.++......|. ++...++++.++++++.  +.+++++||++|+..+++++     
T Consensus        25 ~~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~-~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~-----   98 (361)
T 3ftb_A           25 GRELLDYSSNINPLGIPKSFLNNIDEGIKNLGVYP-DVNYRRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF-----   98 (361)
T ss_dssp             ---CEETTCCCCTTCSCHHHHTTHHHHHHGGGSCC-CTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC-----
T ss_pred             CCCEEEecCCCCCCCCCHHHHHHHHHHHHHhcCCC-CccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc-----
Confidence            5788999876 444578899999887765444553 46679999999999985  45689999999999999986     


Q ss_pred             CeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeee
Q psy5413         142 SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTV  221 (285)
Q Consensus       142 ~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~  221 (285)
                      ++|+++.++|......   .      ...|.+++.++.++++.++++++++++++        +++|++++|+||+ |.+
T Consensus        99 d~vi~~~~~~~~~~~~---~------~~~g~~~~~~~~~~~~~~~~~~l~~~l~~--------~~~v~i~~p~npt-G~~  160 (361)
T 3ftb_A           99 EKILIIVPSYAEYEIN---A------KKHGVSVVFSYLDENMCIDYEDIISKIDD--------VDSVIIGNPNNPN-GGL  160 (361)
T ss_dssp             SEEEEEESCCTHHHHH---H------HHTTCEEEEEECCTTSCCCHHHHHHHTTT--------CSEEEEETTBTTT-TBC
T ss_pred             CcEEEecCChHHHHHH---H------HHcCCeEEEeecCcccCCCHHHHHHhccC--------CCEEEEeCCCCCC-CCC
Confidence            7788887776544331   1      23488889998877767899999999853        6899999999999 899


Q ss_pred             CCHHHHHHHHHHHHHcCCeEEEeCccCChhh--------hccc-CC-eEEEecccccCc--ceeEEee-cCccccc
Q psy5413         222 LPMQWLRELKARCQEHNIPVHMDGARLPLAE--------VCAS-VD-TVMFCLSKGLGA--PVGSILA-GPEEFIQ  284 (285)
Q Consensus       222 ~~~~~l~~i~~la~~~gi~li~Dea~~~~~~--------~~~~-~d-v~~~s~sK~l~~--p~gg~~~-~~~~~i~  284 (285)
                      +|.+++++|+++|++||+++|+||+|+.+..        .... -+ +++.|+||+++.  .+.|+++ .++++++
T Consensus       161 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~  236 (361)
T 3ftb_A          161 INKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAA  236 (361)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHH
T ss_pred             CCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHH
Confidence            9999999999999999999999999872211        1111 12 448899999874  4456665 7777653

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.88  E-value=3.5e-22  Score=183.24  Aligned_cols=200  Identities=15%  Similarity=0.200  Sum_probs=150.8

Q ss_pred             CCeeeeeccCC-cCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCe
Q psy5413          65 NIRTVDIRSDT-ISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSE  143 (285)
Q Consensus        65 ~~~~~~~~~~~-~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~  143 (285)
                      +..++||.++. +....+++.+++..   +...|...+...+|++.++++++.+.+++++||++|++.++++++ ++|| 
T Consensus        41 ~~~ylD~~~~~~~~~~~~~~~~a~~~---~~~~y~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l~-~~gd-  115 (456)
T 2ez2_A           41 KDIYIDLLTDSGTNAMSDKQWAGMMM---GDEAYAGSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAI-KPGQ-  115 (456)
T ss_dssp             GGCSEECSCSSSCCCCCHHHHHHHTT---CCCCSSSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHC-CTTC-
T ss_pred             ccceeeeccccCCccCCHHHHHHhhc---chhhcccChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhC-CCCC-
Confidence            45678887653 34457888888863   235677788899999999999999999999999999999999986 6888 


Q ss_pred             EEecCCcc-eeeecccccccccccccccceeeeeeecCC----------CCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         144 IIVGDCSH-IMLWEQGGASQTSVYSQIGRVLMRGVTNQK----------DGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       144 vi~~~~~h-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                       +++.++| ..+....         ...|.+++.++.++          ++.+|+++|+++|++..   ..++++|++++
T Consensus       116 -i~~~~~~~~~~~~~~---------~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t---~~~~~~v~l~~  182 (456)
T 2ez2_A          116 -YVAGNMYFTTTRYHQ---------EKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKG---AENIAYICLAV  182 (456)
T ss_dssp             -EEEESSCCHHHHHHH---------HHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHC---GGGEEEEEEES
T ss_pred             -EeccccccchhHHHH---------HHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhcc---ccceeEEEEec
Confidence             5555555 5433221         23477777776542          25689999999997621   01359999999


Q ss_pred             ccC-CCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC----------h--hh---------hcccCCeEEEecccccCc
Q psy5413         213 THN-YCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP----------L--AE---------VCASVDTVMFCLSKGLGA  270 (285)
Q Consensus       213 ~~n-~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~----------~--~~---------~~~~~dv~~~s~sK~l~~  270 (285)
                      |+| ++ |.+++.+++++|+++|++||++||+||+|+.          .  ..         .....|++++|++|+++.
T Consensus       183 p~n~pt-G~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~  261 (456)
T 2ez2_A          183 TVNLAG-GQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLV  261 (456)
T ss_dssp             SBTTTT-SBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCC
T ss_pred             cCCCCC-CccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCC
Confidence            998 87 8999999999999999999999999999763          1  11         113468887788898665


Q ss_pred             ceeEEeec-Ccccc
Q psy5413         271 PVGSILAG-PEEFI  283 (285)
Q Consensus       271 p~gg~~~~-~~~~i  283 (285)
                      ++||++++ +++++
T Consensus       262 ~~gG~~~~~~~~~~  275 (456)
T 2ez2_A          262 NIGGFLCMNDDEMF  275 (456)
T ss_dssp             SSCEEEEESCHHHH
T ss_pred             CceeEEEECCHHHH
Confidence            67888887 56654

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.88  E-value=4.8e-22  Score=180.56  Aligned_cols=189  Identities=12%  Similarity=0.070  Sum_probs=143.3

Q ss_pred             cCCcCCCcHHHHHHHHhcc-cCCCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCC
Q psy5413          73 SDTISKPTMEMKNYMFNCE-VGDDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDC  149 (285)
Q Consensus        73 ~~~~~~~~~~v~~a~~~~~-~~~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~  149 (285)
                      +..+..+..+...++.+.. .+...|+  .++...++|+.+++++|.+.+++++||++|+..++++++ ++||+|+++.+
T Consensus        51 s~t~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~ssGt~Ai~~al~~l~-~~Gd~Vi~~~~  129 (415)
T 2fq6_A           51 ASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFI-EQGDHVLMTNT  129 (415)
T ss_dssp             CSCBCCSSHHHHHHHHHTTTTTSCCCTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTC-CTTCEEEEETT
T ss_pred             ccceeeCCHHHHHHhhccccCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHh-CCCCEEEEeCC
Confidence            3444445554443332222 2233444  578899999999999999888888999999999999877 68999999877


Q ss_pred             cceeeeccc-ccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHH
Q psy5413         150 SHIMLWEQG-GASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLR  228 (285)
Q Consensus       150 ~h~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~  228 (285)
                      .|..+.... ...      ...|.++..++..     |+++++++|++       +|++|++++|+|++ |.++|   ++
T Consensus       130 ~y~~~~~~~~~~l------~~~G~~v~~v~~~-----d~~~le~ai~~-------~tklV~~e~~~Npt-G~v~d---l~  187 (415)
T 2fq6_A          130 AYEPSQDFCSKIL------SKLGVTTSWFDPL-----IGADIVKHLQP-------NTKIVFLESPGSIT-MEVHD---VP  187 (415)
T ss_dssp             SCHHHHHHHHHTG------GGGTCEEEEECTT-----CGGGGGGGCCT-------TEEEEEEESSCTTT-CCCCC---HH
T ss_pred             CchHHHHHHHHHH------HHcCcEEEEECCC-----CHHHHHHhhcc-------CCcEEEEECCCCCC-CEeec---HH
Confidence            765443211 111      2457788777652     88999999987       79999999999999 99999   99


Q ss_pred             HHHHHHHH--cCCeEEEeCccCCh---hhhcccCCeEEEecccccCcc---eeEEeecCccccc
Q psy5413         229 ELKARCQE--HNIPVHMDGARLPL---AEVCASVDTVMFCLSKGLGAP---VGSILAGPEEFIQ  284 (285)
Q Consensus       229 ~i~~la~~--~gi~li~Dea~~~~---~~~~~~~dv~~~s~sK~l~~p---~gg~~~~~~~~i~  284 (285)
                      +|+++|++  ||+++|+|++|+..   ..+..++|+++.|++|+++++   .+|++++++++++
T Consensus       188 ~I~~la~~~~~g~~livD~a~a~~~~~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~  251 (415)
T 2fq6_A          188 AIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWE  251 (415)
T ss_dssp             HHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHH
T ss_pred             HHHHHHHhhcCCCEEEEECCCcccccCCccccCCeEEEEeCccccCCCCCceEEEEEeCHHHHH
Confidence            99999999  99999999998822   233457899999999999983   4788888776543

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.88  E-value=3.2e-22  Score=179.87  Aligned_cols=205  Identities=21%  Similarity=0.202  Sum_probs=142.3

Q ss_pred             CCeeeeeccCC----cCCCcHHHHHHHHhcccCCC---CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcc
Q psy5413          65 NIRTVDIRSDT----ISKPTMEMKNYMFNCEVGDD---VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        65 ~~~~~~~~~~~----~~~~~~~v~~a~~~~~~~~~---~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~  137 (285)
                      |++++||.++.    .++.+|++.+++.++.....   .....+...++++.+++++|.+.+++++||++|++.+++++.
T Consensus        35 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~~gt~a~~~al~~~~  114 (392)
T 3ruy_A           35 GNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTAR  114 (392)
T ss_dssp             CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH
Confidence            56778887654    23468999999988765321   223456799999999999998889999999999999999876


Q ss_pred             cc--------C-CCeEEecCCc-ceeeecccccccccccccccc---eeeeeeecCCCCCCCHHHHHHHhcccccccCCc
Q psy5413         138 DR--------R-DSEIIVGDCS-HIMLWEQGGASQTSVYSQIGR---VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCAS  204 (285)
Q Consensus       138 ~~--------~-g~~vi~~~~~-h~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~  204 (285)
                      ..        + +++|++..+. |........+.....+...+.   ..+..++.     .|+++|++++++       +
T Consensus       115 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~-------~  182 (392)
T 3ruy_A          115 RWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-----GDLEALKAAITP-------N  182 (392)
T ss_dssp             HHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-----TCHHHHHHHCCT-------T
T ss_pred             HhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-----ccHHHHHHHhcc-------C
Confidence            43        2 4578776554 444322111110011111111   11222222     289999999986       8


Q ss_pred             eEEEEEecccCCCCeeeCC-HHHHHHHHHHHHHcCCeEEEeCccCChhh-----hcc----cCCeEEEecccccCc--ce
Q psy5413         205 TSLVCVENTHNYCGGTVLP-MQWLRELKARCQEHNIPVHMDGARLPLAE-----VCA----SVDTVMFCLSKGLGA--PV  272 (285)
Q Consensus       205 ~~~v~i~~~~n~~gG~~~~-~~~l~~i~~la~~~gi~li~Dea~~~~~~-----~~~----~~dv~~~s~sK~l~~--p~  272 (285)
                      +++|++++++|++ |.++| .+++++|+++|++||+++|+||+|+++..     ...    ..|+  .++||++++  .+
T Consensus       183 ~~~v~~~~~~npt-G~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~--~~~SK~l~gG~~~  259 (392)
T 3ruy_A          183 TAAFILEPIQGEA-GINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDM--YILGKALGGGVFP  259 (392)
T ss_dssp             EEEEEECSSBSTT-TSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSE--EEECGGGGTTTSC
T ss_pred             eEEEEEeCccCCC-CCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCE--EEEchhhhCChhh
Confidence            9999999999999 77775 55699999999999999999999973311     111    2344  467899987  66


Q ss_pred             eEEeecCccccc
Q psy5413         273 GSILAGPEEFIQ  284 (285)
Q Consensus       273 gg~~~~~~~~i~  284 (285)
                      +|+++.++++++
T Consensus       260 ~G~~~~~~~~~~  271 (392)
T 3ruy_A          260 ISCAAANRDILG  271 (392)
T ss_dssp             CEEEEECHHHHT
T ss_pred             hEEEEECHHHHh
Confidence            788888877654

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.88  E-value=1.9e-22  Score=185.65  Aligned_cols=216  Identities=13%  Similarity=0.060  Sum_probs=142.4

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccC----CC-CccCChhHHHHHHHHHhHc--CCCcEEEcCChHHHHHHHH
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVG----DD-VYLEDPTCKELQEKAAKLA--GKEAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~----~~-~y~~~~~~~~l~~~la~~~--g~~~~~~~~~Gs~a~~~al  133 (285)
                      |++++||.++    +.++++|++.+|+.+++..    .. ..+.++...+|++.+++++  +.+.++|++||++|++.++
T Consensus        50 G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al  129 (460)
T 3gju_A           50 GRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNI  129 (460)
T ss_dssp             CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHH
T ss_pred             CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHH
Confidence            5667777654    3355789999999877642    11 1234677889999999997  4456799999999999999


Q ss_pred             HHcccc------C-CCeEEe-cCCcceeeeccccccccccccc-----ccceeeeeeecC---CCCCCC--------HHH
Q psy5413         134 MTHCDR------R-DSEIIV-GDCSHIMLWEQGGASQTSVYSQ-----IGRVLMRGVTNQ---KDGTFD--------LDE  189 (285)
Q Consensus       134 ~~~~~~------~-g~~vi~-~~~~h~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~---~~~~~d--------~~~  189 (285)
                      ++++..      + ++.|++ ...||+++.....+.....|..     ..+...+.+|..   ++...+        +++
T Consensus       130 ~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~  209 (460)
T 3gju_A          130 KLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADK  209 (460)
T ss_dssp             HHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHH
Confidence            998742      3 456665 5666776643222221111111     113333333321   111122        688


Q ss_pred             HHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCCeE--EE
Q psy5413         190 MEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVDTV--MF  262 (285)
Q Consensus       190 l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~dv~--~~  262 (285)
                      |+++|++.   +.+++++|++++++|++|..+.+.+++++|+++|++||++||+||+|+++.     ...+..++.  +.
T Consensus       210 le~~i~~~---~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~  286 (460)
T 3gju_A          210 LEEMILAE---GPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLI  286 (460)
T ss_dssp             HHHHHHHH---CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEE
T ss_pred             HHHHHHhc---CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCee
Confidence            99988641   123789999999999985568889999999999999999999999988442     112222222  56


Q ss_pred             ecccccCc--ceeEEeecCcccc
Q psy5413         263 CLSKGLGA--PVGSILAGPEEFI  283 (285)
Q Consensus       263 s~sK~l~~--p~gg~~~~~~~~i  283 (285)
                      ++||++++  ...|+++++++++
T Consensus       287 t~sK~l~gG~~~lg~v~~~~~i~  309 (460)
T 3gju_A          287 TIAKGLTSAYAPLSGVIVADRVW  309 (460)
T ss_dssp             EECGGGTTTSSCCEEEEEEHHHH
T ss_pred             eeehhhcCCCCCeEEEEECHHHH
Confidence            78899987  3445666666654

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.88  E-value=4.3e-22  Score=181.24  Aligned_cols=207  Identities=14%  Similarity=0.115  Sum_probs=150.5

Q ss_pred             eeeeeccCCcCCCcHHHHHHHHhccc------------CCCCccCChhHHHHHHHHHhHcC----------CCcEEEcCC
Q psy5413          67 RTVDIRSDTISKPTMEMKNYMFNCEV------------GDDVYLEDPTCKELQEKAAKLAG----------KEAAIFVPS  124 (285)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~a~~~~~~------------~~~~y~~~~~~~~l~~~la~~~g----------~~~~~~~~~  124 (285)
                      .+++|.++....+++.+.+++.++..            ....|.......++++.++++++          .+.+++++|
T Consensus        37 ~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G  116 (428)
T 1iay_A           37 GVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGG  116 (428)
T ss_dssp             SBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEH
T ss_pred             ceeeeccccchhhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccC
Confidence            56888865545567788888875431            11345543347889999999875          345689999


Q ss_pred             hHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccC
Q psy5413         125 GTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHC  202 (285)
Q Consensus       125 Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~  202 (285)
                      |++++..++++++ ++|++|+++.++|......  +.      ...|.+++.++.++  ++.+|++++++++++.. .++
T Consensus       117 ~~~ai~~~~~~~~-~~gd~Vl~~~p~y~~~~~~--~~------~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~~  186 (428)
T 1iay_A          117 ATGANETIIFCLA-DPGDAFLVPSPYYPAFNRD--LR------WRTGVQLIPIHCESSNNFKITSKAVKEAYENAQ-KSN  186 (428)
T ss_dssp             HHHHHHHHHHHHC-CTTCEEEEESSCCTTHHHH--TT------TTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHH-HTT
T ss_pred             hHHHHHHHHHHhC-CCCCeEEEccCCCcchHHH--HH------HhcCCEEEEeecCCccCCcCCHHHHHHHHHHHH-hcC
Confidence            9999999999987 5899999988877544321  11      23478888888753  34689999999986421 112


Q ss_pred             CceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhccc-------CC--eEEEe
Q psy5413         203 ASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVCAS-------VD--TVMFC  263 (285)
Q Consensus       203 ~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~~~-------~d--v~~~s  263 (285)
                      .++++|++++|+||+ |.++|.+++++|+++|++||+++|+||+|..+          ..+...       .|  +++.|
T Consensus       187 ~~~~~v~l~~p~npt-G~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s  265 (428)
T 1iay_A          187 IKVKGLILTNPSNPL-GTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYS  265 (428)
T ss_dssp             CCEEEEEEESSCTTT-CCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEE
T ss_pred             CceEEEEEcCCCCCC-CCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEec
Confidence            368999999999999 89999999999999999999999999998731          112222       57  66999


Q ss_pred             cccccCc--ceeEEeec-Cccccc
Q psy5413         264 LSKGLGA--PVGSILAG-PEEFIQ  284 (285)
Q Consensus       264 ~sK~l~~--p~gg~~~~-~~~~i~  284 (285)
                      +||++|.  .+.|+++. ++++++
T Consensus       266 ~sK~~g~~Glr~G~~~~~~~~~~~  289 (428)
T 1iay_A          266 LSKDMGLPGFRVGIIYSFNDDVVN  289 (428)
T ss_dssp             STTTSSCGGGCEEEEEESCHHHHH
T ss_pred             chhhcCCCCceEEEEEeCCHHHHH
Confidence            9999964  44455555 666543

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.88  E-value=1.5e-22  Score=178.75  Aligned_cols=188  Identities=14%  Similarity=0.086  Sum_probs=142.7

Q ss_pred             cCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC----cEEEcCChHHHHHHHHHHccccCCCeEEecCCcc
Q psy5413          76 ISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE----AAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSH  151 (285)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~----~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h  151 (285)
                      +...++++++++.+....+..+...+...++++.+++++|.+    .+++++||++|+..+++++. +  ++|+++++.|
T Consensus         8 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~-~--d~vl~~~~~~   84 (353)
T 2yrr_A            8 PTPIPERVQKALLRPMRGHLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD-R--GPVLVLVNGA   84 (353)
T ss_dssp             SCCCCHHHHGGGGSCCCCTTCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS-C--CCEEEEECSH
T ss_pred             CCCCCHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc-C--CcEEEEcCCC
Confidence            456788999999887654322222345889999999999874    35889999999999999876 3  7788877665


Q ss_pred             eeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHH
Q psy5413         152 IMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELK  231 (285)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~  231 (285)
                      ... ......      ...|.+++.++.++++.+|+++++++++++      ++++|++++++||+ |.++|   +++|.
T Consensus        85 ~~~-~~~~~~------~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~------~~~~v~~~~~~npt-G~~~~---~~~i~  147 (353)
T 2yrr_A           85 FSQ-RVAEMA------ALHGLDPEVLDFPPGEPVDPEAVARALKRR------RYRMVALVHGETST-GVLNP---AEAIG  147 (353)
T ss_dssp             HHH-HHHHHH------HHTTCCEEEEECCTTSCCCHHHHHHHHHHS------CCSEEEEESEETTT-TEECC---HHHHH
T ss_pred             chH-HHHHHH------HHcCCceEEEeCCCCCCCCHHHHHHHHHhC------CCCEEEEEccCCCc-ceecC---HHHHH
Confidence            442 111122      245788888888777789999999999762      57899999999999 89999   89999


Q ss_pred             HHHHHcCCeEEEeCccC-Chh--hh-cccCCeEEEecccccCcce-eEEeecCcccc
Q psy5413         232 ARCQEHNIPVHMDGARL-PLA--EV-CASVDTVMFCLSKGLGAPV-GSILAGPEEFI  283 (285)
Q Consensus       232 ~la~~~gi~li~Dea~~-~~~--~~-~~~~dv~~~s~sK~l~~p~-gg~~~~~~~~i  283 (285)
                      ++|++||+++|+||+|. +..  .+ ..+.|+++.+++|+++++. .|+++.+++++
T Consensus       148 ~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~  204 (353)
T 2yrr_A          148 ALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEAR  204 (353)
T ss_dssp             HHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHH
T ss_pred             HHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccccCCCceEEEEECHHHH
Confidence            99999999999999987 111  11 1256899999999887743 37777777654

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.88  E-value=3.1e-22  Score=178.41  Aligned_cols=191  Identities=19%  Similarity=0.224  Sum_probs=145.2

Q ss_pred             eccCCcCCCcHHHHHHHHhcccCCC-----Ccc----CChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccc-
Q psy5413          71 IRSDTISKPTMEMKNYMFNCEVGDD-----VYL----EDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCD-  138 (285)
Q Consensus        71 ~~~~~~~~~~~~v~~a~~~~~~~~~-----~y~----~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~-  138 (285)
                      |.......+++++.+++.+......     .|.    ..+...++++.+++++|.+.  +++++||++|+..+++++.. 
T Consensus         4 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~   83 (382)
T 4hvk_A            4 FDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMR   83 (382)
T ss_dssp             CBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             ecCCCcCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhh
Confidence            3344445678899999887664211     121    23456799999999999764  68999999999999998763 


Q ss_pred             --cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCC
Q psy5413         139 --RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNY  216 (285)
Q Consensus       139 --~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~  216 (285)
                        ++|++|+++...|..........      ...|.+++.++.++++.+|+++|++++++       ++++|++++++|+
T Consensus        84 ~~~~gd~vi~~~~~~~~~~~~~~~~------~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-------~~~~v~~~~~~np  150 (382)
T 4hvk_A           84 NARKGKHILVSAVEHMSVINPAKFL------QKQGFEVEYIPVGKYGEVDVSFIDQKLRD-------DTILVSVQHANNE  150 (382)
T ss_dssp             HGGGCCEEEEETTCCHHHHHHHHHH------HHTTCEEEEECBCTTSCBCHHHHHHHCCT-------TEEEEECCSBCTT
T ss_pred             hcCCCCEEEECCCCcHHHHHHHHHH------HhcCCEEEEeccCCCCCcCHHHHHHHhcc-------CceEEEEECCCCC
Confidence              58999999888876554322221      23488889998877888999999999987       7899999999999


Q ss_pred             CCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Ch---hhhcccCCeEEEecccccCcc-eeEEeecC
Q psy5413         217 CGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PL---AEVCASVDTVMFCLSKGLGAP-VGSILAGP  279 (285)
Q Consensus       217 ~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~---~~~~~~~dv~~~s~sK~l~~p-~gg~~~~~  279 (285)
                      + |.+.|   +++|.++|++||+ +|+|++|+ +.   .....+.|+++.|+||+++++ .|.+++.+
T Consensus       151 t-G~~~~---~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~  213 (382)
T 4hvk_A          151 I-GTIQP---VEEISEVLAGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRK  213 (382)
T ss_dssp             T-CBBCC---HHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGTSCTTCEEEEEET
T ss_pred             c-eeeCC---HHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhcCCCceEEEEEcC
Confidence            9 89999   9999999999999 99999987 21   111236899999999987653 44444433

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.88  E-value=1.2e-21  Score=176.61  Aligned_cols=185  Identities=15%  Similarity=0.179  Sum_probs=141.6

Q ss_pred             CCCcHHHHHHHHhcccCCCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceee
Q psy5413          77 SKPTMEMKNYMFNCEVGDDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIML  154 (285)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~  154 (285)
                      ..+.++...+..+.......|+  .++...++++.+++++|.+..++++||++|+..++++++ ++|++|+++.+.|..+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~~~~-~~gd~vl~~~~~y~~~  111 (389)
T 3acz_A           33 CFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFL-QKGDHLIAGDTLYGCT  111 (389)
T ss_dssp             CCSSHHHHHHHHTTCSSCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTTC-CTTCEEEEESSCCHHH
T ss_pred             ecCChHHHHHhhcCCCCCcccCCCCChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHh-CCCCEEEEeCCCchHH
Confidence            4455544444433222223343  478899999999999999888999999999999999876 5899999988777544


Q ss_pred             eccc-ccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHH
Q psy5413         155 WEQG-GASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR  233 (285)
Q Consensus       155 ~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~l  233 (285)
                      .... ...      ...|.+++.++.     .|+++++++|++       ++++|++++|+||+ |.+.|   +++|+++
T Consensus       112 ~~~~~~~~------~~~g~~~~~v~~-----~d~~~l~~~i~~-------~~~~v~~~~~~npt-G~~~~---l~~i~~~  169 (389)
T 3acz_A          112 VSLFTHWL------PRFGIEVDLIDT-----SDVEKVKAAWKP-------NTKMVYLESPANPT-CKVSD---IKGIAVV  169 (389)
T ss_dssp             HHHHHHHH------HHTTCEEEEECT-----TCHHHHHHTCCT-------TEEEEEEESSCTTT-CCCCC---HHHHHHH
T ss_pred             HHHHHHHH------HHcCCEEEEECC-----CCHHHHHHhcCC-------CCeEEEEECCCCCC-CeecC---HHHHHHH
Confidence            3211 111      345788888775     389999999987       79999999999999 89999   9999999


Q ss_pred             HHHcCCeEEEeCccCChh---hhcccCCeEEEecccccCcc---eeEEeecCc-cccc
Q psy5413         234 CQEHNIPVHMDGARLPLA---EVCASVDTVMFCLSKGLGAP---VGSILAGPE-EFIQ  284 (285)
Q Consensus       234 a~~~gi~li~Dea~~~~~---~~~~~~dv~~~s~sK~l~~p---~gg~~~~~~-~~i~  284 (285)
                      |++||+++|+||+|....   .+..+.|+++.|++|+++++   ++|+++.++ ++++
T Consensus       170 ~~~~~~~livD~~~~~~~~~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~  227 (389)
T 3acz_A          170 CHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIA  227 (389)
T ss_dssp             HHHHTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHH
T ss_pred             HHHcCCEEEEECCCccccccCccccCCeEEEECChhhccCCCCceeEEEEECcHHHHH
Confidence            999999999999988322   23357899999999999884   357887777 6653

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.88  E-value=1.4e-22  Score=182.62  Aligned_cols=201  Identities=14%  Similarity=0.088  Sum_probs=151.2

Q ss_pred             CeeeeeccCCcCC---CcHHHHHHHHhcccC----CCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHc
Q psy5413          66 IRTVDIRSDTISK---PTMEMKNYMFNCEVG----DDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        66 ~~~~~~~~~~~~~---~~~~v~~a~~~~~~~----~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~  136 (285)
                      +.++||.++.+..   +++++.+++.++...    ...|...+...++++.+++++|.+  .+++++||++|+..+++++
T Consensus        32 ~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~  111 (397)
T 2zyj_A           32 PGILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVF  111 (397)
T ss_dssp             TTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHH
T ss_pred             CCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHh
Confidence            4578998765432   678999998876542    245665556889999999999853  5789999999999999998


Q ss_pred             cccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEE-EEecccC
Q psy5413         137 CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLV-CVENTHN  215 (285)
Q Consensus       137 ~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v-~i~~~~n  215 (285)
                      + ++|++|++..++|......   .      ...|.+++.++.++++ +|+++|++++++.      ++++| ++++++|
T Consensus       112 ~-~~gd~Vl~~~p~y~~~~~~---~------~~~g~~~~~~~~~~~~-~d~~~l~~~l~~~------~~~~v~~~~~~~n  174 (397)
T 2zyj_A          112 L-DEGSPVLLEAPSYMGAIQA---F------RLQGPRFLTVPAGEEG-PDLDALEEVLKRE------RPRFLYLIPSFQN  174 (397)
T ss_dssp             C-CTTCEEEEEESCCHHHHHH---H------HTTCCEEEEEEEETTE-ECHHHHHHHHHHC------CCSCEEECCBSCT
T ss_pred             C-CCCCEEEEeCCCcHHHHHH---H------HHcCCEEEecCcCCCC-CCHHHHHHHHhhc------CCeEEEECCCCcC
Confidence            6 5899999887766544321   1      2347788888775544 8999999999752      56787 4688999


Q ss_pred             CCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhccc---CC-eEEEecccccCc-ceeEEeecCc
Q psy5413         216 YCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVCAS---VD-TVMFCLSKGLGA-PVGSILAGPE  280 (285)
Q Consensus       216 ~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~~~---~d-v~~~s~sK~l~~-p~gg~~~~~~  280 (285)
                      |+ |.++|.+++++|+++|++||+++|+||+|+.+          ..+...   -+ +++.|+||+++. .+.|+++.++
T Consensus       175 pt-G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~  253 (397)
T 2zyj_A          175 PT-GGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAHP  253 (397)
T ss_dssp             TT-CCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECCH
T ss_pred             CC-CCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccceeEEEecCH
Confidence            99 89999999999999999999999999998732          111111   22 558999999984 4557887777


Q ss_pred             cccc
Q psy5413         281 EFIQ  284 (285)
Q Consensus       281 ~~i~  284 (285)
                      ++++
T Consensus       254 ~~~~  257 (397)
T 2zyj_A          254 EALQ  257 (397)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.88  E-value=3.5e-22  Score=181.83  Aligned_cols=207  Identities=17%  Similarity=0.143  Sum_probs=152.2

Q ss_pred             CeeeeeccCCcC---CCcHHHHHHHHhcccC----CCCccCChhHHHHHHHHHhHc----CC-----CcEEEcCChHHHH
Q psy5413          66 IRTVDIRSDTIS---KPTMEMKNYMFNCEVG----DDVYLEDPTCKELQEKAAKLA----GK-----EAAIFVPSGTMGN  129 (285)
Q Consensus        66 ~~~~~~~~~~~~---~~~~~v~~a~~~~~~~----~~~y~~~~~~~~l~~~la~~~----g~-----~~~~~~~~Gs~a~  129 (285)
                      +.++||.++.+.   .+++++.+++.+....    ...|.......++++.+++++    |.     +.+++++||++|+
T Consensus        43 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al  122 (425)
T 1vp4_A           43 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQAL  122 (425)
T ss_dssp             TTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHH
T ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHH
Confidence            467899876543   3678999998876642    145665556788999999988    73     3468999999999


Q ss_pred             HHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccc-cCCceEEE
Q psy5413         130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNI-HCASTSLV  208 (285)
Q Consensus       130 ~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~-~~~~~~~v  208 (285)
                      ..++++++ ++|++|++..++|.......         ...|.+++.++.++++ +|+++|++++++.... ++.++++|
T Consensus       123 ~~~~~~l~-~~gd~Vl~~~p~y~~~~~~~---------~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v  191 (425)
T 1vp4_A          123 DLIGKLFL-DDESYCVLDDPAYLGAINAF---------RQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFI  191 (425)
T ss_dssp             HHHHHHHC-CTTCEEEEEESCCHHHHHHH---------HTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred             HHHHHHhC-CCCCEEEEeCCCcHHHHHHH---------HHcCCEEEEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEE
Confidence            99999986 58999999877765443311         2347788888875544 8999999998651000 01268888


Q ss_pred             -EEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhc-ccCCeEEEecccccCc-ceeEE
Q psy5413         209 -CVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVC-ASVDTVMFCLSKGLGA-PVGSI  275 (285)
Q Consensus       209 -~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~-~~~dv~~~s~sK~l~~-p~gg~  275 (285)
                       ++++++||| |.++|.+++++|+++|++||+++|+||+|+.+.          .+. ...++++.|+||+++. .+.|+
T Consensus       192 ~~~~~~~npt-G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~  270 (425)
T 1vp4_A          192 YVVSNFHNPA-GVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGM  270 (425)
T ss_dssp             EEECSSCTTT-CCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEE
T ss_pred             EECCCCCCCC-CCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccccccceEE
Confidence             478899999 899999999999999999999999999987321          111 1234669999999984 45678


Q ss_pred             eecCccccc
Q psy5413         276 LAGPEEFIQ  284 (285)
Q Consensus       276 ~~~~~~~i~  284 (285)
                      ++.++++++
T Consensus       271 ~~~~~~~~~  279 (425)
T 1vp4_A          271 VAGSKEFIR  279 (425)
T ss_dssp             EECCHHHHH
T ss_pred             EeeCHHHHH
Confidence            888777654

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.88  E-value=2.2e-22  Score=185.86  Aligned_cols=231  Identities=15%  Similarity=0.086  Sum_probs=150.8

Q ss_pred             CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccC----CcCCCcHHHHHHHHhcccCC---C--C
Q psy5413          26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSD----TISKPTMEMKNYMFNCEVGD---D--V   96 (285)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~---~--~   96 (285)
                      .|..+.++.+.+.|+..                      |++++||.++    +.++++|+|.+|+.+++...   .  .
T Consensus        37 ~p~~~~~~~G~~l~d~~----------------------G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~   94 (472)
T 3hmu_A           37 GTRVITRARGVWLNDSE----------------------GEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFF   94 (472)
T ss_dssp             CCEEEEEEEBTEEEETT----------------------CCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSS
T ss_pred             CCeeEEEeecCEEEECC----------------------CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcccccccc
Confidence            35556666666666644                      4566666543    33568999999998876531   1  1


Q ss_pred             ccCChhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc-------CCCeEEe-cCCcceeeeccccccccccc
Q psy5413          97 YLEDPTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR-------RDSEIIV-GDCSHIMLWEQGGASQTSVY  166 (285)
Q Consensus        97 y~~~~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~-------~g~~vi~-~~~~h~~~~~~~~~~~~~~~  166 (285)
                      ...++...+|++.++++++  .+.++|++||++|++.++++++..       .++.||+ ...||+++.........+.|
T Consensus        95 ~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~  174 (472)
T 3hmu_A           95 KTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGM  174 (472)
T ss_dssp             SEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHH
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhh
Confidence            2346778999999999985  457899999999999999998742       2345555 56778766433222211111


Q ss_pred             ccc----cceeeeeeecC---CCCCCC--------HHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHH
Q psy5413         167 SQI----GRVLMRGVTNQ---KDGTFD--------LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELK  231 (285)
Q Consensus       167 ~~~----~g~~~~~~~~~---~~~~~d--------~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~  231 (285)
                      ...    .+...+..|..   .++ .|        +++|+++|++.   +.+++++|++|++++++|..+.++++|++|+
T Consensus       175 ~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~---~~~~~aavi~epv~~~gG~~~~~~~~l~~l~  250 (472)
T 3hmu_A          175 HAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILEL---GENRVAAFIAEPVQGAGGVIVAPDSYWPEIQ  250 (472)
T ss_dssp             HHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHH---CGGGEEEEEECSSBSTTTCBCCCTTHHHHHH
T ss_pred             ccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhc---CCCCEEEEEEcCccCCCCcccCCHHHHHHHH
Confidence            111    12333332220   011 23        78899888641   1137899999999999855666899999999


Q ss_pred             HHHHHcCCeEEEeCccCChh-----hhcccCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413         232 ARCQEHNIPVHMDGARLPLA-----EVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       232 ~la~~~gi~li~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                      ++|++||++||+||+|+++.     ...+..++.  +.+++|++++   |+| +++++++++
T Consensus       251 ~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~sK~l~gg~~plG-~v~~~~~i~  311 (472)
T 3hmu_A          251 RICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIG-GSIVCDEVA  311 (472)
T ss_dssp             HHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCE-EEEEEHHHH
T ss_pred             HHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceeeechhhhcCCcceE-EEEECHHHH
Confidence            99999999999999988442     112222222  4577899876   445 555566654

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.88  E-value=7.2e-22  Score=176.90  Aligned_cols=187  Identities=18%  Similarity=0.082  Sum_probs=145.6

Q ss_pred             CCCcHHHHHHHHhcccCC-CC---c-cCChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHcccc----------
Q psy5413          77 SKPTMEMKNYMFNCEVGD-DV---Y-LEDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDR----------  139 (285)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~-~~---y-~~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~----------  139 (285)
                      ..++|++.+++.+..... ..   | +..+...++++.+++++|.+.  +++++||++|+..+++++...          
T Consensus        40 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~  119 (397)
T 3f9t_A           40 SNVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLS  119 (397)
T ss_dssp             CCCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhccc
Confidence            346789999998766532 11   1 123445678899999998764  499999999999999998743          


Q ss_pred             --CCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCC
Q psy5413         140 --RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYC  217 (285)
Q Consensus       140 --~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~  217 (285)
                        +|++|+++.++|..+.....         ..|.+++.++.++++.+|+++|++++++.      ++++|++++|+|++
T Consensus       120 ~~~gd~vl~~~~~~~~~~~~~~---------~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~~~~v~~~~~~npt  184 (397)
T 3f9t_A          120 KNEHPKIIVPITAHFSFEKGRE---------MMDLEYIYAPIKEDYTIDEKFVKDAVEDY------DVDGIIGIAGTTEL  184 (397)
T ss_dssp             CCSSCEEEEETTCCTHHHHHHH---------HHTCEEEEECBCTTSSBCHHHHHHHHHHS------CCCEEEEEBSCTTT
T ss_pred             CCCCeEEEECCcchhHHHHHHH---------HcCceeEEEeeCCCCcCCHHHHHHHHhhc------CCeEEEEECCCCCC
Confidence              38999999998876544222         34889999998778889999999999762      57899999999999


Q ss_pred             CeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------------------hhcccCCeEEEecccccCc--ceeEEee
Q psy5413         218 GGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------------------EVCASVDTVMFCLSKGLGA--PVGSILA  277 (285)
Q Consensus       218 gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------------------~~~~~~dv~~~s~sK~l~~--p~gg~~~  277 (285)
                       |.+.|   +++|+++|++||+++|+||+|+...                  ... ++|+++.+++|++++  +.|++++
T Consensus       185 -G~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~  259 (397)
T 3f9t_A          185 -GTIDN---IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILF  259 (397)
T ss_dssp             -CCBCC---HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEE
T ss_pred             -CCCCC---HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEE
Confidence             88999   9999999999999999999987211                  011 678899999999865  5666667


Q ss_pred             cCcccc
Q psy5413         278 GPEEFI  283 (285)
Q Consensus       278 ~~~~~i  283 (285)
                      .++.++
T Consensus       260 ~~~~~~  265 (397)
T 3f9t_A          260 KDIGYK  265 (397)
T ss_dssp             SSGGGG
T ss_pred             eCHHHH
Confidence            766554

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.88  E-value=2.8e-22  Score=179.12  Aligned_cols=183  Identities=14%  Similarity=0.105  Sum_probs=141.6

Q ss_pred             HHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcC---CCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecc
Q psy5413          81 MEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAG---KEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ  157 (285)
Q Consensus        81 ~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~  157 (285)
                      +++.+++.+.   ...|+..+...++++.++++++   .+.+++++||++|+..++++++ ++||+|+++.++|......
T Consensus        46 ~~~~~~~~~~---~~~y~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~-~~gd~Vl~~~~~~~~~~~~  121 (375)
T 3op7_A           46 EDFYKKLQGT---KLNYGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI-EPGDHVISLYPTYQQLYDI  121 (375)
T ss_dssp             HHHHHHHHTS---CCSSCCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESSCTHHHHH
T ss_pred             HHHHHHHhcC---CcCCCCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCchhHHHH
Confidence            4555555433   3567766778899999999963   3568999999999999999987 6899999988877554332


Q ss_pred             cccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHH
Q psy5413         158 GGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQ  235 (285)
Q Consensus       158 ~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~  235 (285)
                      .         ...|.+++.++.++  .+.+|+++|++++++       ++++|++++|+||+ |.++|.+++++|+++|+
T Consensus       122 ~---------~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-------~~~~v~~~~~~npt-G~~~~~~~l~~i~~la~  184 (375)
T 3op7_A          122 P---------KSLGAEVDLWQIEEENGWLPDLEKLRQLIRP-------TTKMICINNANNPT-GAVMDRTYLEELVEIAS  184 (375)
T ss_dssp             H---------HHTTCEEEEEEEEGGGTTEECHHHHHHHCCT-------TCCEEEEESSCTTT-CCCCCHHHHHHHHHHHH
T ss_pred             H---------HHcCCEEEEEeccccCCCCCCHHHHHHhhcc-------CCeEEEEcCCCCCC-CCCCCHHHHHHHHHHHH
Confidence            1         23477887777642  445799999999987       78999999999999 89999999999999999


Q ss_pred             HcCCeEEEeCccCChh-----hhc--ccCCeEEEecccccCc--ceeEEeecCccccc
Q psy5413         236 EHNIPVHMDGARLPLA-----EVC--ASVDTVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       236 ~~gi~li~Dea~~~~~-----~~~--~~~dv~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      +||+++|+||+|..+.     ...  ...++++.|+||+++.  .++|+++.++++++
T Consensus       185 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~  242 (375)
T 3op7_A          185 EVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTD  242 (375)
T ss_dssp             TTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHH
T ss_pred             HcCCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHH
Confidence            9999999999988321     111  2334669999999973  55678887877654

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.88  E-value=2.3e-21  Score=175.91  Aligned_cols=184  Identities=21%  Similarity=0.198  Sum_probs=142.3

Q ss_pred             cCCcCCCcHHHHHHHHhcccCCCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCc
Q psy5413          73 SDTISKPTMEMKNYMFNCEVGDDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCS  150 (285)
Q Consensus        73 ~~~~~~~~~~v~~a~~~~~~~~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~  150 (285)
                      +..+..++++..++..+ ..+...|+  .++...++++.+++++|.+.+++++||++|+..++++++ ++|++|+++.+.
T Consensus        27 s~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~al~~l~-~~gd~vi~~~~~  104 (412)
T 2cb1_A           27 VAAYGFKTLEEGQERFA-TGEGYVYARQKDPTAKALEERLKALEGALEAVVLASGQAATFAALLALL-RPGDEVVAAKGL  104 (412)
T ss_dssp             CSBCCCSSHHHHHHHHH-HCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTC-CTTCEEEEETTC
T ss_pred             cceeecCChHHHHHHhc-cccCcCcCCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCC
Confidence            33445666655444433 22334555  447899999999999999989999999999999999886 589999998888


Q ss_pred             ceeeeccc-ccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHH
Q psy5413         151 HIMLWEQG-GASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRE  229 (285)
Q Consensus       151 h~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~  229 (285)
                      |..+.... ...      ...|.+++.++.      |+++|+++|++       ++++|++++++|++ |.++|   +++
T Consensus       105 ~~~~~~~~~~~~------~~~g~~~~~~~~------~~~~l~~~i~~-------~~~~v~~~~~~n~~-G~~~~---l~~  161 (412)
T 2cb1_A          105 FGQTIGLFGQVL------SLMGVTVRYVDP------EPEAVREALSA-------KTRAVFVETVANPA-LLVPD---LEA  161 (412)
T ss_dssp             CHHHHHHHHHTT------TTTTCEEEEECS------SHHHHHHHCCT-------TEEEEEEESSCTTT-CCCCC---HHH
T ss_pred             chhHHHHHHHHH------HHcCCEEEEECC------CHHHHHHHhcc-------CCeEEEEeCCCCCC-ccccc---HHH
Confidence            75443211 111      245778888775      48999999987       89999999999999 89999   999


Q ss_pred             HHHHHHHcCCeEEEeCccCCh----hhhcccCCeEEEecccccCc---ceeEEeecCcc
Q psy5413         230 LKARCQEHNIPVHMDGARLPL----AEVCASVDTVMFCLSKGLGA---PVGSILAGPEE  281 (285)
Q Consensus       230 i~~la~~~gi~li~Dea~~~~----~~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~  281 (285)
                      |+++|++||+++|+||+|+..    .....+.|+++.|+||++++   +.|++++.+++
T Consensus       162 i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~  220 (412)
T 2cb1_A          162 LATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRET  220 (412)
T ss_dssp             HHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCC
T ss_pred             HHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccc
Confidence            999999999999999999843    22334789999999999987   46777777643

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.87  E-value=3.3e-22  Score=179.95  Aligned_cols=196  Identities=16%  Similarity=0.175  Sum_probs=146.2

Q ss_pred             eeeeeccCCcCCCcHHHHHHHHhcccC---C--CCcc----CChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHH
Q psy5413          67 RTVDIRSDTISKPTMEMKNYMFNCEVG---D--DVYL----EDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMT  135 (285)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~a~~~~~~~---~--~~y~----~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~  135 (285)
                      .++.|........++++.+++.+....   .  ..|.    ..+...++++.+++++|.+  .+++++||++|+..++++
T Consensus        20 ~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~   99 (400)
T 3vax_A           20 HMTYLDAAATTRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLG   99 (400)
T ss_dssp             --CCCCCCCCSSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHT
T ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHH
Confidence            445555444456788999998876541   1  1121    2345789999999999976  579999999999999998


Q ss_pred             cc---ccCCC-eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413         136 HC---DRRDS-EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVE  211 (285)
Q Consensus       136 ~~---~~~g~-~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~  211 (285)
                      ++   .++|| +|+++...|.+........      ...|.+++.++.++++.+|+++|++++++       ++++|+++
T Consensus       100 l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~------~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-------~~~~v~~~  166 (400)
T 3vax_A          100 LAPYGERTGRRHIITSAIEHKAVLEPLEHL------AGRGFEVDFLTPGPSGRISVEGVMERLRP-------DTLLVSLM  166 (400)
T ss_dssp             THHHHHHHTCCEEEEETTSCHHHHHHHHHH------HTTTCEEEEECCCTTCCCCHHHHHTTCCT-------TEEEEECC
T ss_pred             HHHhhccCCCCEEEECccccHhHHHHHHHH------HhcCCeEEEEccCCCCCcCHHHHHHhcCC-------CceEEEEE
Confidence            75   14799 9999887776543322111      23588899998877888999999999987       79999999


Q ss_pred             cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhhh--cccCCeEEEecccccCcc-eeEEe-ecC
Q psy5413         212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAEV--CASVDTVMFCLSKGLGAP-VGSIL-AGP  279 (285)
Q Consensus       212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~~--~~~~dv~~~s~sK~l~~p-~gg~~-~~~  279 (285)
                      +++||+ |.++|   +++|.++|++||+++|+||+|+ +....  ....|+++.|+||.++.+ .|+++ +.+
T Consensus       167 ~~~npt-G~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~  235 (400)
T 3vax_A          167 HVNNET-GVIQP---VAELAQQLRATPTYLHVDAAQGYGKVPGDLTTPIDMISISGHKIGAPKGVGALVTRRR  235 (400)
T ss_dssp             SBCTTT-CBBCC---HHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSCCSEEEEETGGGTSCSSCEEEEECBC
T ss_pred             CCCCCc-eeeCc---HHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhcCcEEEEeHHHhCCCCceEEEEEecc
Confidence            999999 89999   8999999999999999999987 22111  111889999999966553 44444 444

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.87  E-value=5.3e-22  Score=181.07  Aligned_cols=206  Identities=12%  Similarity=0.050  Sum_probs=151.8

Q ss_pred             eeeeeccCCcCCCcHHHHHHHHhcccCC-------------CCccCChhHHHHHHHHHhHcC----------CCcEEEcC
Q psy5413          67 RTVDIRSDTISKPTMEMKNYMFNCEVGD-------------DVYLEDPTCKELQEKAAKLAG----------KEAAIFVP  123 (285)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~-------------~~y~~~~~~~~l~~~la~~~g----------~~~~~~~~  123 (285)
                      .++.+....-..+++.+.+++.++....             ..|.......+|++.++++++          .+.+++++
T Consensus        39 ~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~  118 (435)
T 3piu_A           39 GIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTA  118 (435)
T ss_dssp             SBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEE
T ss_pred             CeEEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcC
Confidence            3566665555557889999888764311             246655567899999999987          45679999


Q ss_pred             ChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhccccccc
Q psy5413         124 SGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIH  201 (285)
Q Consensus       124 ~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~  201 (285)
                      ||++|+..++++++ ++|+.|+++.++|........        ...|.+++.++.++  .+.+|+++|++++++.. .+
T Consensus       119 gg~~a~~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~  188 (435)
T 3piu_A          119 GATSANETFIFCLA-DPGEAVLIPTPYYPGFDRDLK--------WRTGVEIVPIHCTSSNGFQITETALEEAYQEAE-KR  188 (435)
T ss_dssp             HHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHTT--------TTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHH-HT
T ss_pred             ChHHHHHHHHHHhc-CCCCeEEECCCccccHHHHHH--------HhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHH-hc
Confidence            99999999999987 689999998888765433221        13488888888754  34589999999997521 12


Q ss_pred             CCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhccc---------CC--eE
Q psy5413         202 CASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVCAS---------VD--TV  260 (285)
Q Consensus       202 ~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~~~---------~d--v~  260 (285)
                      +.++++|++++|+||+ |.+++.+++++|+++|++||+++|+||+|...          ..+...         .|  ++
T Consensus       189 ~~~~~~v~i~~p~npt-G~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~  267 (435)
T 3piu_A          189 NLRVKGVLVTNPSNPL-GTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHV  267 (435)
T ss_dssp             TCCEEEEEEESSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEE
T ss_pred             CCCeEEEEEcCCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEE
Confidence            3378999999999999 89999999999999999999999999998721          111111         22  56


Q ss_pred             EEecccccCc--ceeEEeec-Ccccc
Q psy5413         261 MFCLSKGLGA--PVGSILAG-PEEFI  283 (285)
Q Consensus       261 ~~s~sK~l~~--p~gg~~~~-~~~~i  283 (285)
                      +.|+||++|.  .+.|++++ +++++
T Consensus       268 i~s~sK~~g~~G~r~G~~~~~~~~~~  293 (435)
T 3piu_A          268 VYSLSKDLGLPGFRVGAIYSNDDMVV  293 (435)
T ss_dssp             EEESSSSSCCGGGCEEEEEESCHHHH
T ss_pred             EEeeecccCCCceeEEEEEeCCHHHH
Confidence            8999999973  44556655 45443

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.87  E-value=1.1e-21  Score=176.95  Aligned_cols=197  Identities=16%  Similarity=0.112  Sum_probs=149.0

Q ss_pred             CCeeeeeccCCc-CC-CcHHHHHHHHhcccC--C------CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTI-SK-PTMEMKNYMFNCEVG--D------DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~-~~-~~~~v~~a~~~~~~~--~------~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~  134 (285)
                      |+++++|.+++. +. .+|++.+++.++...  .      ..|+..+...++++.+++++|.+..+++++|++++..++.
T Consensus        45 g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~~  124 (401)
T 2bwn_A           45 KQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLS  124 (401)
T ss_dssp             EEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHH
T ss_pred             CCcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHHH
Confidence            577888886554 32 578999998876542  1      1345557799999999999998877777899999988887


Q ss_pred             Hccc-cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         135 THCD-RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       135 ~~~~-~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      ++.. ++|+.|+++.++|.......         ...|.+++.++.+     |+++++++++...   .+++++|+++++
T Consensus       125 ~l~~~~~gd~Vl~~~~~~~~~~~~~---------~~~g~~~~~v~~~-----d~~~le~~l~~~~---~~~~~~v~~~~~  187 (401)
T 2bwn_A          125 TLRVLFPGLIIYSDSLNHASMIEGI---------KRNAGPKRIFRHN-----DVAHLRELIAADD---PAAPKLIAFESV  187 (401)
T ss_dssp             HHHHHSTTCEEEEETTCCHHHHHHH---------HHSCCCEEEECTT-----CHHHHHHHHHHSC---TTSCEEEEEESB
T ss_pred             HHhcCCCCCEEEECchhhHHHHHHH---------HHcCCeEEEEcCC-----CHHHHHHHHHhhc---cCCceEEEEecC
Confidence            7532 47899999988886654322         2347788888763     7899999887411   027899999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hh-----cccCCeEEEecccccCcceeEEeecCcc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA------EV-----CASVDTVMFCLSKGLGAPVGSILAGPEE  281 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~-----~~~~dv~~~s~sK~l~~p~gg~~~~~~~  281 (285)
                      +|++ |.++|   +++|+++|++||+++|+||+|+ +..      .+     ....|+++.|+||+++++ ||+++++++
T Consensus       188 ~npt-G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~-GG~~~~~~~  262 (401)
T 2bwn_A          188 YSMD-GDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVF-GGYIAASAR  262 (401)
T ss_dssp             CTTT-CCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSC-CEEEEECHH
T ss_pred             cCCC-CCcCC---HHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCC-CCEEecCHH
Confidence            9999 89999   9999999999999999999988 211      11     123577899999999974 578877766


Q ss_pred             cc
Q psy5413         282 FI  283 (285)
Q Consensus       282 ~i  283 (285)
                      ++
T Consensus       263 ~~  264 (401)
T 2bwn_A          263 MV  264 (401)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.87  E-value=6.3e-22  Score=178.28  Aligned_cols=199  Identities=13%  Similarity=0.024  Sum_probs=147.4

Q ss_pred             eeeeeccCCcCC-CcHHHHHHHHhccc-CCCCccCChhHHHHHHHHHhHc----C----CCcEEEcCChHHHHHHHHHHc
Q psy5413          67 RTVDIRSDTISK-PTMEMKNYMFNCEV-GDDVYLEDPTCKELQEKAAKLA----G----KEAAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        67 ~~~~~~~~~~~~-~~~~v~~a~~~~~~-~~~~y~~~~~~~~l~~~la~~~----g----~~~~~~~~~Gs~a~~~al~~~  136 (285)
                      .+++|..+.+.. +++++.+++.++.. ....|...  ..++++.+++++    |    .+.+++++||++|+..+++++
T Consensus        32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l  109 (399)
T 1c7n_A           32 EVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREF  109 (399)
T ss_dssp             TCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHH
T ss_pred             CceeeeecCCCCCCCHHHHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHh
Confidence            467787666543 67899999887764 23455532  778888888874    5    345799999999999999998


Q ss_pred             cccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC-CC--CCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         137 CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-KD--GTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       137 ~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      + ++|++|++..++|.......         ...|.+++.++.. ++  +.+|+++|++++++.      ++++|++++|
T Consensus       110 ~-~~gd~vl~~~p~~~~~~~~~---------~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~------~~~~v~~~~~  173 (399)
T 1c7n_A          110 T-KPGDGVIIITPVYYPFFMAI---------KNQERKIIECELLEKDGYYTIDFQKLEKLSKDK------NNKALLFCSP  173 (399)
T ss_dssp             C-CTTCEEEECSSCCTHHHHHH---------HTTTCEEEECCCEEETTEEECCHHHHHHHHTCT------TEEEEEEESS
T ss_pred             c-CCCCEEEEcCCCcHhHHHHH---------HHcCCEEEecccccCCCCEEEcHHHHHHHhccC------CCcEEEEcCC
Confidence            7 58999999887765443321         2347788877763 22  248999999999731      7899999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc------ccCCeEEEecccccCc--ceeEEeec
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC------ASVDTVMFCLSKGLGA--PVGSILAG  278 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~------~~~dv~~~s~sK~l~~--p~gg~~~~  278 (285)
                      +||+ |.++|.+++++|+++|++||+++|+||+|+.+.       .+.      ...++++.|+||+++.  .+.|+++.
T Consensus       174 ~npt-G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~  252 (399)
T 1c7n_A          174 HNPV-GRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIII  252 (399)
T ss_dssp             BTTT-TBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEEC
T ss_pred             CCCC-CcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEE
Confidence            9999 899999999999999999999999999987321       111      1223568999999874  44566766


Q ss_pred             C-ccccc
Q psy5413         279 P-EEFIQ  284 (285)
Q Consensus       279 ~-~~~i~  284 (285)
                      + +++++
T Consensus       253 ~~~~~~~  259 (399)
T 1c7n_A          253 KNPDIRE  259 (399)
T ss_dssp             CCHHHHH
T ss_pred             CCHHHHH
Confidence            4 55543

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.87  E-value=7.6e-22  Score=181.50  Aligned_cols=216  Identities=11%  Similarity=0.030  Sum_probs=142.6

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCC---C--CccCChhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHH
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD---D--VYLEDPTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~---~--~y~~~~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al  133 (285)
                      |++++||.++    +.++++|++.+|+.+++...   .  ....++...++++.++++++  .+.++|++||++|++.++
T Consensus        49 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al  128 (459)
T 4a6r_A           49 GNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMI  128 (459)
T ss_dssp             CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHH
T ss_pred             CCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHH
Confidence            5667777654    33557899999998876521   1  12356778999999999984  567899999999999999


Q ss_pred             HHcccc-------CCCeEEe-cCCcceeeeccccccccccccc-----ccceeeeeeecC---CCCCCC--------HHH
Q psy5413         134 MTHCDR-------RDSEIIV-GDCSHIMLWEQGGASQTSVYSQ-----IGRVLMRGVTNQ---KDGTFD--------LDE  189 (285)
Q Consensus       134 ~~~~~~-------~g~~vi~-~~~~h~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~---~~~~~d--------~~~  189 (285)
                      ++++..       .++.|++ ...||+++...........|..     ..+...+.+|..   .+. .|        +++
T Consensus       129 ~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~  207 (459)
T 4a6r_A          129 RMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARW  207 (459)
T ss_dssp             HHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHH
Confidence            998742       3566665 5666766533222211111111     113333333320   111 34        788


Q ss_pred             HHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCCeE--EE
Q psy5413         190 MEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVDTV--MF  262 (285)
Q Consensus       190 l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~dv~--~~  262 (285)
                      |+++|++.   +.+++++|+++++++++|..+.+.+++++|+++|++||++||+||+|+++.     ...+..++.  +.
T Consensus       208 le~~i~~~---~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~  284 (459)
T 4a6r_A          208 LEEKILEI---GADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLF  284 (459)
T ss_dssp             HHHHHHHH---CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE
T ss_pred             HHHHHHHc---CCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCee
Confidence            99988641   112789999999998886667799999999999999999999999988432     112222222  55


Q ss_pred             ecccccCc--ceeEEeecCccccc
Q psy5413         263 CLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       263 s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      ++||++++  ...|++++++++++
T Consensus       285 t~sK~l~gg~~~lg~v~~~~~i~~  308 (459)
T 4a6r_A          285 TAAKGLSSGYLPIGAVFVGKRVAE  308 (459)
T ss_dssp             EECGGGGTTSSCCEEEEECHHHHH
T ss_pred             ehhhhhcCCCCCccceeeCHHHHH
Confidence            78899876  34455666776543

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.87  E-value=1.3e-21  Score=172.06  Aligned_cols=192  Identities=13%  Similarity=0.052  Sum_probs=150.4

Q ss_pred             CeeeeeccC-CcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCC
Q psy5413          66 IRTVDIRSD-TISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDS  142 (285)
Q Consensus        66 ~~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~  142 (285)
                      +++++|.++ ++..++|.+.+++.+...+...|. ++...++++.++++++.+  .+++++|+++++..++.++   +|+
T Consensus        16 ~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~y~-~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~---~gd   91 (337)
T 3p1t_A           16 AQAVCLAFNENPEAVEPRVQAAIAAAAARINRYP-FDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF---SSM   91 (337)
T ss_dssp             CCCEECSSCCCCSCCCHHHHHHHHHHGGGTTSCC-TTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS---TTS
T ss_pred             CCceEeeCCCCCCCCCHHHHHHHHHhhhhhccCC-CCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc---CCC
Confidence            467888866 666789999999998776656674 678999999999999875  4688888899999999886   789


Q ss_pred             eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413         143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL  222 (285)
Q Consensus       143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~  222 (285)
                      +|+++.++|.......         ...|.+++.++.++++.+|+++++++  .       ++++|++++|+||+ |.++
T Consensus        92 ~vl~~~p~~~~~~~~~---------~~~g~~~~~v~~~~~~~~d~~~l~~~--~-------~~~~v~i~~p~npt-G~~~  152 (337)
T 3p1t_A           92 RFVTAWPGFDGYRARI---------AVSGLRHFEIGLTDDLLLDPNDLAQV--S-------RDDCVVLANPSNPT-GQAL  152 (337)
T ss_dssp             EEEEESSSCSHHHHHH---------TTSCCEEEEECBCTTSSBCHHHHTTC--C-------TTEEEEEESSCTTT-CCCC
T ss_pred             eEEEeCCCcHHHHHHH---------HHcCCEEEEecCCCCCCCCHHHHHhh--c-------CCCEEEEeCCCCCC-CCCC
Confidence            9999888876544322         24488999998877778999998876  2       56899999999999 9999


Q ss_pred             CHHHHHHHHHHHHHcCCeEEEeCccCChhh-----h-cccCCeEEEecccccC--cceeEEeecCccccc
Q psy5413         223 PMQWLRELKARCQEHNIPVHMDGARLPLAE-----V-CASVDTVMFCLSKGLG--APVGSILAGPEEFIQ  284 (285)
Q Consensus       223 ~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----~-~~~~dv~~~s~sK~l~--~p~gg~~~~~~~~i~  284 (285)
                      |   ++++.++|+++++ +|+||+|..+..     . ....++++.|+||+++  |.+.|+++.++++++
T Consensus       153 ~---~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~  218 (337)
T 3p1t_A          153 S---AGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIA  218 (337)
T ss_dssp             C---HHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHH
T ss_pred             C---HHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEeeCchhccCcchheEEEEeCHHHHH
Confidence            9   7777888888997 666999873221     1 1234567999999997  366788888877654

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.87  E-value=7.1e-22  Score=179.00  Aligned_cols=197  Identities=17%  Similarity=0.144  Sum_probs=149.4

Q ss_pred             CeeeeeccCCc-----CCCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcC--------------CCcEEEcCC
Q psy5413          66 IRTVDIRSDTI-----SKPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAG--------------KEAAIFVPS  124 (285)
Q Consensus        66 ~~~~~~~~~~~-----~~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g--------------~~~~~~~~~  124 (285)
                      +.+++|..+.+     ..+++.+.+++.+....  ...|+......++++.++++++              .+.+++++|
T Consensus        33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g  112 (416)
T 1bw0_A           33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSG  112 (416)
T ss_dssp             SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESH
T ss_pred             CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCC
Confidence            35788888765     34788999999877653  2456655567899999999987              345799999


Q ss_pred             hHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccC
Q psy5413         125 GTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHC  202 (285)
Q Consensus       125 Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~  202 (285)
                      |++|+..++++++ ++|++|++..++|......   .      ...|.+++.++.++  .+.+|+++|++++++      
T Consensus       113 ~~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~~---~------~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------  176 (416)
T 1bw0_A          113 GSHGILMAITAIC-DAGDYALVPQPGFPHYETV---C------KAYGIGMHFYNCRPENDWEADLDEIRRLKDD------  176 (416)
T ss_dssp             HHHHHHHHHHHHC-CTTCEEEEEESCCTHHHHH---H------HHTTCEEEEEEEEGGGTTEECHHHHHHHCCT------
T ss_pred             hHHHHHHHHHHhC-CCCCEEEEcCCCcHhHHHH---H------HHcCcEEEEeecCcccCCCCCHHHHHHHhcc------
Confidence            9999999999986 5899999987776544331   1      23477888777643  355899999999976      


Q ss_pred             CceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----------hhc---ccCC-eEEEecccc
Q psy5413         203 ASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----------EVC---ASVD-TVMFCLSKG  267 (285)
Q Consensus       203 ~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----------~~~---~~~d-v~~~s~sK~  267 (285)
                       ++++|++++|+||+ |.++|.+++++|+++|++||+++|+||+|..+.           .+.   ...+ +++.|+||+
T Consensus       177 -~~~~v~i~~p~npt-G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~  254 (416)
T 1bw0_A          177 -KTKLLIVTNPSNPC-GSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKN  254 (416)
T ss_dssp             -TEEEEEEESSCTTT-CCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTT
T ss_pred             -CCeEEEEeCCCCCC-CcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhh
Confidence             78999999999999 899999999999999999999999999988321           111   1112 448999999


Q ss_pred             cCc--ceeEEeecCc
Q psy5413         268 LGA--PVGSILAGPE  280 (285)
Q Consensus       268 l~~--p~gg~~~~~~  280 (285)
                      +++  .+.|+++.++
T Consensus       255 ~~~~Glr~G~~~~~~  269 (416)
T 1bw0_A          255 LVVPGWRLGWLLYVD  269 (416)
T ss_dssp             TSCGGGCCEEEEEEC
T ss_pred             CCCCCceEEEEEeeC
Confidence            765  4456666544

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.87  E-value=7.9e-22  Score=176.15  Aligned_cols=189  Identities=20%  Similarity=0.221  Sum_probs=143.5

Q ss_pred             CcCCCcHHHHHHHHhcccC---CC--Ccc----CChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHcc---ccC
Q psy5413          75 TISKPTMEMKNYMFNCEVG---DD--VYL----EDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHC---DRR  140 (285)
Q Consensus        75 ~~~~~~~~v~~a~~~~~~~---~~--~y~----~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~---~~~  140 (285)
                      ..+.+++++++++.+....   ..  .|.    ..+...++++.+++++|.+  .+++++||++|+..+++++.   .++
T Consensus         8 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~   87 (382)
T 4eb5_A            8 SAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARK   87 (382)
T ss_dssp             TCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHGGG
T ss_pred             CCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhccCC
Confidence            3356789999999876652   11  132    1346889999999999976  56899999999999999876   258


Q ss_pred             CCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCee
Q psy5413         141 DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT  220 (285)
Q Consensus       141 g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~  220 (285)
                      |++|+++++.|..........      ...|.+++.++.++++.+|+++|++++++       ++++|++++++||+ |.
T Consensus        88 gd~Vl~~~~~~~~~~~~~~~~------~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-------~~~~v~~~~~~npt-G~  153 (382)
T 4eb5_A           88 GKHILVSAVEHMSVINPAKFL------QKQGFEVEYIPVGKYGEVDVSFIDQKLRD-------DTILVSVQHANNEI-GT  153 (382)
T ss_dssp             CCEEEEETTCCHHHHHHHHHH------TTTTCEEEEECBCTTSCBCHHHHHHHCCT-------TEEEEECCSBCTTT-CB
T ss_pred             CCEEEECCCcchHHHHHHHHH------HhCCcEEEEeccCCCCccCHHHHHHHhcC-------CCeEEEEeccCCCc-cc
Confidence            999999888876543322211      23488888888877778999999999987       78999999999999 89


Q ss_pred             eCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh--hh-cccCCeEEEecccccCcceeEEeecCcc
Q psy5413         221 VLPMQWLRELKARCQEHNIPVHMDGARL-PLA--EV-CASVDTVMFCLSKGLGAPVGSILAGPEE  281 (285)
Q Consensus       221 ~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~--~~-~~~~dv~~~s~sK~l~~p~gg~~~~~~~  281 (285)
                      ++|   +++|.++|++||++ |+||+|+ +..  .+ ..+.|+++.|+||+++.+..|+++.+++
T Consensus       154 ~~~---l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~  214 (382)
T 4eb5_A          154 IQP---VEEISEVLAGKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKE  214 (382)
T ss_dssp             BCC---HHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGTCCSSCEEEEEETT
T ss_pred             cCC---HHHHHHHHHHCCCE-EEEcchhcCCcccCccccCCCEEEeehHHhcCCCceEEEEEccc
Confidence            999   89999999999999 9999987 111  11 1267899999999866432345544443

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.87  E-value=5e-22  Score=179.53  Aligned_cols=190  Identities=11%  Similarity=0.052  Sum_probs=145.4

Q ss_pred             cCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc--E-EEcCChHHHHHHHHHHccccCCCeEEecCCcce
Q psy5413          76 ISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA--A-IFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHI  152 (285)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~--~-~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~  152 (285)
                      +...++++.+++.+...++..+...+...++++.+++++|.+.  . ++++||++|+..++++++ ++||+|+++++.|.
T Consensus        19 p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~-~~gd~Vl~~~~~~~   97 (416)
T 3isl_A           19 PVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVI-EPEDDVLIPIYGRF   97 (416)
T ss_dssp             SCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHC-CTTCEEEEEESSHH
T ss_pred             CcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhc-CCCCEEEEecCCcc
Confidence            3456788888887754333222234568899999999999764  3 478899999999999986 68999999877765


Q ss_pred             eeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHH
Q psy5413         153 MLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKA  232 (285)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~  232 (285)
                      ... .....      ...|.+++.++.++++.+|+++|++++++.      ++++|++++++|++ |.+.|   +++|++
T Consensus        98 ~~~-~~~~~------~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~~~~v~~~~~~npt-G~~~~---l~~i~~  160 (416)
T 3isl_A           98 GYL-LTEIA------ERYGANVHMLECEWGTVFDPEDIIREIKKV------KPKIVAMVHGETST-GRIHP---LKAIGE  160 (416)
T ss_dssp             HHH-HHHHH------HHTTCEEEEEECCTTCCCCHHHHHHHHHHH------CCSEEEEESEETTT-TEECC---CHHHHH
T ss_pred             cHH-HHHHH------HhcCCeeEEEecCCCCCCCHHHHHHHHhhC------CCcEEEEEccCCCC-ceecC---HHHHHH
Confidence            411 11122      345888999998778889999999999842      78999999999999 89999   999999


Q ss_pred             HHHHcCCeEEEeCccC-Chh---hhcccCCeEEEecccccCcc-eeEEeecCcccc
Q psy5413         233 RCQEHNIPVHMDGARL-PLA---EVCASVDTVMFCLSKGLGAP-VGSILAGPEEFI  283 (285)
Q Consensus       233 la~~~gi~li~Dea~~-~~~---~~~~~~dv~~~s~sK~l~~p-~gg~~~~~~~~i  283 (285)
                      +|++||+++|+|++|+ +..   ....+.|+++.++||+++++ ..|+++.+++++
T Consensus       161 l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~  216 (416)
T 3isl_A          161 ACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVA  216 (416)
T ss_dssp             HHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHH
T ss_pred             HHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCccccCCCCCeEEEEECHHHH
Confidence            9999999999999987 211   11236799999999997764 346777776654

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.87  E-value=3.5e-21  Score=177.91  Aligned_cols=211  Identities=15%  Similarity=0.150  Sum_probs=153.0

Q ss_pred             CccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC--CCCccCChhHHHHHHHH----HhHcCCC--
Q psy5413          46 SIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKA----AKLAGKE--  117 (285)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~l----a~~~g~~--  117 (285)
                      ..++...|.+|.+..+...            ....+.+...+.....+  ...|...|...++|+.+    ++++|.+  
T Consensus        64 ~~~~~~~~~~p~~~~~~~~------------~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~  131 (475)
T 3k40_A           64 IMPGVTHWHSPKFHAYFPT------------ANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAE  131 (475)
T ss_dssp             TGGGCCCTTCTTBCCSSCC------------CCCHHHHHHHHHHHHHCCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HhccCCCCCCcCceeeCCC------------CCcHHHHHHHHHHHHhCccccCccCCcHHHHHHHHHHHHHHHHhCCCch
Confidence            4566777888865544433            22344454444333332  34577788888888876    5556765  


Q ss_pred             ---------cEEEcCChHHHHHHHHHHcccc------------------CCCeEEecCCcceeeeccccccccccccccc
Q psy5413         118 ---------AAIFVPSGTMGNLIAIMTHCDR------------------RDSEIIVGDCSHIMLWEQGGASQTSVYSQIG  170 (285)
Q Consensus       118 ---------~~~~~~~Gs~a~~~al~~~~~~------------------~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~  170 (285)
                               .++|++|||+|+..++.+++.+                  +++.|+++...|.+..+...+.         
T Consensus       132 ~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~---------  202 (475)
T 3k40_A          132 FLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLG---------  202 (475)
T ss_dssp             GCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHH---------
T ss_pred             hccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHc---------
Confidence                     3699999999999999987532                  1246888999998877654444         


Q ss_pred             ceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh
Q psy5413         171 RVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL  250 (285)
Q Consensus       171 g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~  250 (285)
                      |.+++.+|.++++ +|+++|+++|+++.+ .+..+.+|+++.+++.+ |.+.|   +++|+++|++||+|+|+|++|+..
T Consensus       203 g~~~~~v~~d~~~-~d~~~L~~~i~~~~~-~~~~~~~v~~~~~~t~~-G~~~~---l~~I~~la~~~~~~lhvD~A~~~~  276 (475)
T 3k40_A          203 GVKLRSVQSENHR-MRGAALEKAIEQDVA-EGLIPFYAVVTLGTTNS-CAFDY---LDECGPVGNKHNLWIHVDAAYAGS  276 (475)
T ss_dssp             TCEEEEECCBTTB-CCHHHHHHHHHHHHH-TTCEEEEEEEEBSCTTT-CCBCC---HHHHHHHHHHTTCEEEEECTTGGG
T ss_pred             CCceEEEECCCCC-cCHHHHHHHHHHHHH-CCCccEEEEEEecCCCC-cCcCC---HHHHHHHHHHhCCeEEEeHHhHHH
Confidence            8899999987788 999999999987322 12237788888888888 89999   999999999999999999998832


Q ss_pred             h-------hh---cccCCeEEEecccccCcc--eeEEeecCcccc
Q psy5413         251 A-------EV---CASVDTVMFCLSKGLGAP--VGSILAGPEEFI  283 (285)
Q Consensus       251 ~-------~~---~~~~dv~~~s~sK~l~~p--~gg~~~~~~~~i  283 (285)
                      .       ..   .+.+|++++++|||+++|  .|++++.+++++
T Consensus       277 ~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l  321 (475)
T 3k40_A          277 AFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWV  321 (475)
T ss_dssp             GGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC
T ss_pred             HHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHH
Confidence            1       11   135699999999999985  445666666554

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.87  E-value=2.5e-21  Score=174.39  Aligned_cols=202  Identities=16%  Similarity=0.126  Sum_probs=138.9

Q ss_pred             CCeeeeeccC---C-cCCCcHHHHHHHHhcccCC----CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHc
Q psy5413          65 NIRTVDIRSD---T-ISKPTMEMKNYMFNCEVGD----DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        65 ~~~~~~~~~~---~-~~~~~~~v~~a~~~~~~~~----~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~  136 (285)
                      |+.++||.++   + .++++|++.+++.++....    ..| ..+...++++.+++++|.+.+++++||++|++.+++++
T Consensus        39 g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g~~~v~~~~gg~~a~~~al~~~  117 (397)
T 2ord_A           39 GNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLF-WNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIA  117 (397)
T ss_dssp             CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTS-EEHHHHHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHH
T ss_pred             CCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCcccc-CCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHH
Confidence            4567888754   3 3446899999998766421    123 35678999999999999888999999999999999987


Q ss_pred             ccc-----CC-CeEEec-CCcceeeecccccccccccccccc---eeeeeeecCCCCCCCHHHHHHHhcccccccCCceE
Q psy5413         137 CDR-----RD-SEIIVG-DCSHIMLWEQGGASQTSVYSQIGR---VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       137 ~~~-----~g-~~vi~~-~~~h~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                      ...     +| ++|++. ..+|..............+...+.   ..++.++.     .|+++|++++++       +++
T Consensus       118 ~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~l~~-------~~~  185 (397)
T 2ord_A          118 RKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-----NNVEDLRRKMSE-------DVC  185 (397)
T ss_dssp             HHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-----TCHHHHHHHCCT-------TEE
T ss_pred             HHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-----CCHHHHHHHhhc-------CeE
Confidence            531     43 566665 455665442211110000000000   01344443     289999999976       899


Q ss_pred             EEEEecccCCCCee-eCCHHHHHHHHHHHHHcCCeEEEeCccCChhh---------hcccCCeEEEecccccCc-ceeEE
Q psy5413         207 LVCVENTHNYCGGT-VLPMQWLRELKARCQEHNIPVHMDGARLPLAE---------VCASVDTVMFCLSKGLGA-PVGSI  275 (285)
Q Consensus       207 ~v~i~~~~n~~gG~-~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~---------~~~~~dv~~~s~sK~l~~-p~gg~  275 (285)
                      +|++++++||+ |. +++.+++++|+++|++||+++|+||+|+++..         +....|++  ++||++++ .+.|+
T Consensus       186 ~v~~~~~~npt-G~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~r~G~  262 (397)
T 2ord_A          186 AVFLEPIQGES-GIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVL--TTAKGLGGGVPIGA  262 (397)
T ss_dssp             EEEECSEECTT-TCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEE
T ss_pred             EEEEecccCCC-CcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCee--eeccccCCCcCeEE
Confidence            99999999999 66 99999999999999999999999999984321         11125654  77899986 33445


Q ss_pred             eecCccc
Q psy5413         276 LAGPEEF  282 (285)
Q Consensus       276 ~~~~~~~  282 (285)
                      ++.++++
T Consensus       263 ~~~~~~~  269 (397)
T 2ord_A          263 VIVNERA  269 (397)
T ss_dssp             EEECSTT
T ss_pred             EEEchHh
Confidence            5555554

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.87  E-value=1.7e-21  Score=174.71  Aligned_cols=199  Identities=14%  Similarity=0.093  Sum_probs=147.1

Q ss_pred             CeeeeeccCCcCC-CcHHHHHHHHhcccC-CCCcc--CChhHHHHHHHHHhHcC----CCcEEEcCChHHHHHHHHHHcc
Q psy5413          66 IRTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYL--EDPTCKELQEKAAKLAG----KEAAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~--~~~~~~~l~~~la~~~g----~~~~~~~~~Gs~a~~~al~~~~  137 (285)
                      ..+++|..+.+.. ++|++.+++.++... ...|.  ..+...++++.+++++|    .+.+++++||++|+..++++++
T Consensus        32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~  111 (391)
T 4dq6_A           32 NDLLPMWVADMDFKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELT  111 (391)
T ss_dssp             SCSEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS
T ss_pred             CCceeccccCCCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhC
Confidence            4668888766654 678999999887653 23343  33456667777777766    3457999999999999999987


Q ss_pred             ccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--C--CCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         138 DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--K--DGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       138 ~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                       ++|++|+++.++|.......         ...|.+++.++.+  .  ++.+|++++++++++        +++|++++|
T Consensus       112 -~~gd~vl~~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--------~~~v~i~~p  173 (391)
T 4dq6_A          112 -KANDKIMIQEPVYSPFNSVV---------KNNNRELIISPLQKLENGNYIMDYEDIENKIKD--------VKLFILCNP  173 (391)
T ss_dssp             -CTTCEEEECSSCCTHHHHHH---------HHTTCEEEECCCEECTTSCEECCHHHHHHHCTT--------EEEEEEESS
T ss_pred             -CCCCEEEEcCCCCHHHHHHH---------HHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc--------CCEEEEECC
Confidence             68999999888876543322         2347888888765  2  234899999999853        789999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhcc------cCCeEEEecccccCc--ceeEEeec
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVCA------SVDTVMFCLSKGLGA--PVGSILAG  278 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~~------~~dv~~~s~sK~l~~--p~gg~~~~  278 (285)
                      +||+ |.+++.+++++|+++|++||+++|+||+|+.+.       .+..      ...+++.|+||+++.  .+.|+++.
T Consensus       174 ~npt-G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~  252 (391)
T 4dq6_A          174 HNPV-GRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVL  252 (391)
T ss_dssp             BTTT-TBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEEC
T ss_pred             CCCC-CcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEe
Confidence            9999 899999999999999999999999999988321       1111      122558999999863  45566665


Q ss_pred             Cc-ccc
Q psy5413         279 PE-EFI  283 (285)
Q Consensus       279 ~~-~~i  283 (285)
                      ++ +++
T Consensus       253 ~~~~~~  258 (391)
T 4dq6_A          253 PDEKDY  258 (391)
T ss_dssp             CSHHHH
T ss_pred             CCHHHH
Confidence            44 554

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.87  E-value=4.4e-21  Score=177.54  Aligned_cols=211  Identities=15%  Similarity=0.141  Sum_probs=153.2

Q ss_pred             CccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHH-hccc-CCCCccCChhHHHHHHHHHhH----cCCC--
Q psy5413          46 SIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMF-NCEV-GDDVYLEDPTCKELQEKAAKL----AGKE--  117 (285)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~-~~~~-~~~~y~~~~~~~~l~~~la~~----~g~~--  117 (285)
                      ..++...|.+|.+..+...            ....|.+...+. .... +...|...|...++|+.++++    +|.+  
T Consensus        69 ~~~~~~~~~~p~~~~~~~~------------~~~~~~~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~  136 (481)
T 4e1o_A           69 IMPGVVHWQSPHMHAYYPA------------LTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEH  136 (481)
T ss_dssp             TGGGCCCTTSTTBCSSSCC------------CCCHHHHHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred             HhcCCCCCCCCCeeEeCCC------------CCCHHHHHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChh
Confidence            3466778888864444332            223444444443 3332 245677788888898877554    5654  


Q ss_pred             ----------cEEEcCChHHHHHHHHHHcccc------------------CCCeEEecCCcceeeecccccccccccccc
Q psy5413         118 ----------AAIFVPSGTMGNLIAIMTHCDR------------------RDSEIIVGDCSHIMLWEQGGASQTSVYSQI  169 (285)
Q Consensus       118 ----------~~~~~~~Gs~a~~~al~~~~~~------------------~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~  169 (285)
                                .+++++|||+|+..++.+++.+                  ++..|+++...|.++.+...+.        
T Consensus       137 ~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~--------  208 (481)
T 4e1o_A          137 FLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLIS--------  208 (481)
T ss_dssp             GCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHH--------
T ss_pred             hhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhC--------
Confidence                      3589999999999999987642                  3457888999998877654444        


Q ss_pred             cceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC
Q psy5413         170 GRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP  249 (285)
Q Consensus       170 ~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~  249 (285)
                       |.+++.++.++++.+|+++|+++|+++.. .+..+.+|+++.+++++ |.+.|   |++|+++|++||+|+|+|++|+.
T Consensus       209 -g~~~~~v~~~~~~~~d~~~Le~~i~~~~~-~g~~~~~vv~~~~~t~~-G~id~---l~~I~~la~~~~~~lhvDaA~g~  282 (481)
T 4e1o_A          209 -LVKMKFLPVDDNFSLRGEALQKAIEEDKQ-RGLVPVFVCATLGTTGV-CAFDC---LSELGPICAREGLWLHIDAAYAG  282 (481)
T ss_dssp             -TCEEEEECCCTTSCCCHHHHHHHHHHHHH-TTCEEEEEEEEBSCTTT-CCBCC---HHHHHHHHHHHTCEEEEECTTGG
T ss_pred             -CCceEEEEcCCCCcCCHHHHHHHHHHHHh-CCCCcEEEEEecCCCCC-cCcCC---HHHHHHHHHHcCCeEEeehhhHH
Confidence             88899999877889999999999986322 22237788888888888 89988   99999999999999999999883


Q ss_pred             hh-------hh---cccCCeEEEecccccCcc--eeEEeecCccc
Q psy5413         250 LA-------EV---CASVDTVMFCLSKGLGAP--VGSILAGPEEF  282 (285)
Q Consensus       250 ~~-------~~---~~~~dv~~~s~sK~l~~p--~gg~~~~~~~~  282 (285)
                      ..       ..   .+.+|++++++|||+++|  .|++++.++++
T Consensus       283 ~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~  327 (481)
T 4e1o_A          283 TAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYK  327 (481)
T ss_dssp             GGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHH
T ss_pred             HHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHH
Confidence            21       11   134699999999999985  34556666554

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.87  E-value=2.7e-21  Score=176.41  Aligned_cols=208  Identities=19%  Similarity=0.139  Sum_probs=141.6

Q ss_pred             CCeeeeeccCC----cCCCcHHHHHHHHhcccCCCCc-cCChhHHHHHHHHHhHc-CCCcEEEcCChHHHHHHHHHHccc
Q psy5413          65 NIRTVDIRSDT----ISKPTMEMKNYMFNCEVGDDVY-LEDPTCKELQEKAAKLA-GKEAAIFVPSGTMGNLIAIMTHCD  138 (285)
Q Consensus        65 ~~~~~~~~~~~----~~~~~~~v~~a~~~~~~~~~~y-~~~~~~~~l~~~la~~~-g~~~~~~~~~Gs~a~~~al~~~~~  138 (285)
                      |++++||.++.    .++++|++.+++.++......+ ...+...++++.+++++ +.+.++|++||++|++.+++++..
T Consensus        55 g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~  134 (434)
T 2epj_A           55 GARIVDLVLAYGPLILGHKHPRVLEAVEEALARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARG  134 (434)
T ss_dssp             CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCCSSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCEEEEcccchhcccCCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHH
Confidence            57788987663    3457899999999877642222 24667899999999999 778889999999999999998421


Q ss_pred             -cCCCeEEe-cCCcceeeeccccccccc--cc--ccccce------eeeeeecCCCCCCCHHHHHHHhcccccccCCceE
Q psy5413         139 -RRDSEIIV-GDCSHIMLWEQGGASQTS--VY--SQIGRV------LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       139 -~~g~~vi~-~~~~h~~~~~~~~~~~~~--~~--~~~~g~------~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                       ..+++|++ ...+|..+..........  .+  ....|.      .++.++.     .|+++|++++++.    +++++
T Consensus       135 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~----~~~~~  205 (434)
T 2epj_A          135 YTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-----NDVEALERVFAEY----GDRIA  205 (434)
T ss_dssp             HHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-----TCHHHHHHHHHHH----GGGEE
T ss_pred             hhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-----CCHHHHHHHHHhC----CCCEE
Confidence             23455555 456676543221111000  00  001122      2344443     3899999999751    23789


Q ss_pred             EEEEecccCCCCeeeC-CHHHHHHHHHHHHHcCCeEEEeCccCChh----hhcc----cCCeEEEecccccCc-ceeEEe
Q psy5413         207 LVCVENTHNYCGGTVL-PMQWLRELKARCQEHNIPVHMDGARLPLA----EVCA----SVDTVMFCLSKGLGA-PVGSIL  276 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~-~~~~l~~i~~la~~~gi~li~Dea~~~~~----~~~~----~~dv~~~s~sK~l~~-p~gg~~  276 (285)
                      +|+++++++++ |.+. +.+++++|+++|++||++||+||+|+++.    ...+    ..|  +.|+||++++ ..+|++
T Consensus       206 ~vi~ep~~~~~-G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~d--i~s~sK~l~~G~~~G~v  282 (434)
T 2epj_A          206 GVIVEPVIANA-GVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGLEGAQGYFNIEGD--IIVLGKIIGGGFPVGAV  282 (434)
T ss_dssp             EEEECSSBCSS-SCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSSTTHHHHHHTCCCS--EEEEEGGGGTTSSCEEE
T ss_pred             EEEEeCCcCCC-CccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCCcchhhHHhCCCCC--eeeecchhcCCcceeee
Confidence            99999988887 6655 79999999999999999999999998542    1111    234  4588899987 335566


Q ss_pred             ecCccccc
Q psy5413         277 AGPEEFIQ  284 (285)
Q Consensus       277 ~~~~~~i~  284 (285)
                      ++++++++
T Consensus       283 ~~~~~~~~  290 (434)
T 2epj_A          283 AGSREVMS  290 (434)
T ss_dssp             EECHHHHT
T ss_pred             eecHHHHH
Confidence            66677654

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.87  E-value=2.5e-21  Score=174.73  Aligned_cols=183  Identities=17%  Similarity=0.225  Sum_probs=141.6

Q ss_pred             CcHHHHHHHHhccc--CCCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceee
Q psy5413          79 PTMEMKNYMFNCEV--GDDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIML  154 (285)
Q Consensus        79 ~~~~v~~a~~~~~~--~~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~  154 (285)
                      ..+++.+++..+..  ....|+  .++...++++.+++++|.+..+++++|++|+..++++++ ++|++|+++.+.|..+
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~-~~gd~vi~~~~~~~~~  116 (398)
T 2rfv_A           38 VFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLC-QQGDHIVSASAIYGCT  116 (398)
T ss_dssp             CCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESSSCHHH
T ss_pred             ccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEcCCCcccH
Confidence            45666666652222  223343  567899999999999999888999999999999999987 5899999988887654


Q ss_pred             eccc-ccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHH
Q psy5413         155 WEQG-GASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR  233 (285)
Q Consensus       155 ~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~l  233 (285)
                      .... ...      ...|.+++.++..     |++++++++++       ++++|++++|+||+ |.++|   +++|+++
T Consensus       117 ~~~~~~~~------~~~g~~~~~v~~~-----d~~~l~~~i~~-------~~~~v~~~~~~npt-G~~~~---l~~i~~l  174 (398)
T 2rfv_A          117 HAFLSHSM------PKFGINVRFVDAA-----KPEEIRAAMRP-------ETKVVYIETPANPT-LSLVD---IETVAGI  174 (398)
T ss_dssp             HHHHHTHH------HHTTCEEEEECTT-----SHHHHHHHCCT-------TEEEEEEESSBTTT-TBCCC---HHHHHHH
T ss_pred             HHHHHHHH------HHcCCEEEEeCCC-----CHHHHHHhcCC-------CCeEEEEECCCCCC-CcccC---HHHHHHH
Confidence            3321 111      2347888888763     89999999987       79999999999999 89999   9999999


Q ss_pred             HHHcCCeEEEeCccCC-h--hhhcccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413         234 CQEHNIPVHMDGARLP-L--AEVCASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ  284 (285)
Q Consensus       234 a~~~gi~li~Dea~~~-~--~~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~  284 (285)
                      |++||+++|+||+|.. .  .....+.|+++.|+||++++   +.||+++.++++++
T Consensus       175 ~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~  231 (398)
T 2rfv_A          175 AHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFID  231 (398)
T ss_dssp             HHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHH
T ss_pred             HHHcCCEEEEECCCcccccCCchhhCCcEEEEeCcccccCCCCceEEEEEECHHHHH
Confidence            9999999999999882 1  12234689999999999976   34688888776653

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.87  E-value=1.2e-21  Score=175.93  Aligned_cols=197  Identities=11%  Similarity=0.051  Sum_probs=145.2

Q ss_pred             eeeeeccCCcC-CCcHHHHHHHHhcccC-CCCccCChhHHH-HHHHHHhHc----C----CCcEEEcCChHHHHHHHHHH
Q psy5413          67 RTVDIRSDTIS-KPTMEMKNYMFNCEVG-DDVYLEDPTCKE-LQEKAAKLA----G----KEAAIFVPSGTMGNLIAIMT  135 (285)
Q Consensus        67 ~~~~~~~~~~~-~~~~~v~~a~~~~~~~-~~~y~~~~~~~~-l~~~la~~~----g----~~~~~~~~~Gs~a~~~al~~  135 (285)
                      +++||..+.+. .++|++.+++.++... ...|...  ..+ +++.+++++    |    .+.+++++||++|+..++++
T Consensus        29 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~  106 (390)
T 1d2f_A           29 DLLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQ  106 (390)
T ss_dssp             -CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHH
T ss_pred             CeeEeeecCCCCCCCHHHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHH
Confidence            56888776654 3678999999887643 3445532  556 888888875    4    24579999999999999999


Q ss_pred             ccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC---CCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         136 HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD---GTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       136 ~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      ++ ++|++|++..++|.......         ...|.+++.++.+++   +.+|+++|++++++.      ++++|++++
T Consensus       107 l~-~~gd~vl~~~p~y~~~~~~~---------~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~------~~~~v~l~~  170 (390)
T 1d2f_A          107 WS-ETGEGVVIHTPAYDAFYKAI---------EGNQRTVMPVALEKQADGWFCDMGKLEAVLAKP------ECKIMLLCS  170 (390)
T ss_dssp             SS-CTTCEEEEEESCCHHHHHHH---------HHTTCEEEEEECEECSSSEECCHHHHHHHHTST------TEEEEEEES
T ss_pred             hc-CCCCEEEEcCCCcHHHHHHH---------HHCCCEEEEeecccCCCccccCHHHHHHHhccC------CCeEEEEeC
Confidence            87 58999998877665443211         234778888876433   248999999999752      689999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------h---hcccC-CeEEEecccccCc--ceeEEeec-
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------E---VCASV-DTVMFCLSKGLGA--PVGSILAG-  278 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~---~~~~~-dv~~~s~sK~l~~--p~gg~~~~-  278 (285)
                      |+||+ |.++|.+++++|+++|++||+++|+||+|+.+.       .   +.... |. +.|+||+++.  .+.|+++. 
T Consensus       171 p~npt-G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~  248 (390)
T 1d2f_A          171 PQNPT-GKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIE  248 (390)
T ss_dssp             SCTTT-CCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEEC
T ss_pred             CCCCC-CcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEEEC
Confidence            99999 899999999999999999999999999987321       1   11122 66 9999999863  44566654 


Q ss_pred             Ccccc
Q psy5413         279 PEEFI  283 (285)
Q Consensus       279 ~~~~i  283 (285)
                      +++++
T Consensus       249 ~~~~~  253 (390)
T 1d2f_A          249 NSSSR  253 (390)
T ss_dssp             SHHHH
T ss_pred             CHHHH
Confidence            55654

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.87  E-value=3.7e-21  Score=176.05  Aligned_cols=163  Identities=17%  Similarity=0.236  Sum_probs=134.1

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccc-cccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGG-ASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~~~~~~~g~~~~~~  177 (285)
                      .++...++++.+++++|.+..+++++|++|+..++++++ ++||+|+++.+.|..+..... ..      ...|.+++.+
T Consensus       112 ~~~~~~~l~~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~-~~Gd~Vi~~~~~y~~~~~~~~~~~------~~~G~~v~~v  184 (445)
T 1qgn_A          112 GNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETIL------PKMGITATVI  184 (445)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHS-CSSCEEEEETTSCHHHHHHHHHTG------GGGTCEEEEE
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHHH------HHcCCEEEEe
Confidence            568899999999999999888999999999999999876 589999998877765433111 11      3458888888


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCce-EEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhh
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCAST-SLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEV  253 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~-~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~  253 (285)
                      +..     |+++++++|++       ++ ++|++++|+||+ |.+.|   +++|+++|++||+++|+|++|+..   ...
T Consensus       185 ~~~-----d~~~l~~ai~~-------~tv~lV~le~p~Npt-G~v~d---l~~I~~la~~~g~~livD~a~~~~~~~~~~  248 (445)
T 1qgn_A          185 DPA-----DVGALELALNQ-------KKVNLFFTESPTNPF-LRCVD---IELVSKLCHEKGALVCIDGTFATPLNQKAL  248 (445)
T ss_dssp             CSS-----CHHHHHHHHHH-------SCEEEEEEESSCTTT-CCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCCTT
T ss_pred             CCC-----CHHHHHHHhcc-------CCCCEEEEeCCCCCC-CcccC---HHHHHHHHHHcCCEEEEECCCcccccCCcc
Confidence            763     89999999987       67 999999999999 89999   999999999999999999999822   122


Q ss_pred             cccCCeEEEecccccCcc---eeEEeecCccccc
Q psy5413         254 CASVDTVMFCLSKGLGAP---VGSILAGPEEFIQ  284 (285)
Q Consensus       254 ~~~~dv~~~s~sK~l~~p---~gg~~~~~~~~i~  284 (285)
                      ..++|+++.|+||++++.   ++|++++++++++
T Consensus       249 ~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~  282 (445)
T 1qgn_A          249 ALGADLVLHSATKFLGGHNDVLAGCISGPLKLVS  282 (445)
T ss_dssp             TTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHH
T ss_pred             ccCCEEEEECCcccccccccceEEEEEECHHHHH
Confidence            347899999999999985   4888888877654

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.87  E-value=1.3e-21  Score=177.38  Aligned_cols=207  Identities=14%  Similarity=0.086  Sum_probs=151.4

Q ss_pred             CCeeeeeccCCc------CCCcHHHHHHHHhccc-CCCCccCChhHHHHHHHHHhHc----CCC---cEEEcCChHHHHH
Q psy5413          65 NIRTVDIRSDTI------SKPTMEMKNYMFNCEV-GDDVYLEDPTCKELQEKAAKLA----GKE---AAIFVPSGTMGNL  130 (285)
Q Consensus        65 ~~~~~~~~~~~~------~~~~~~v~~a~~~~~~-~~~~y~~~~~~~~l~~~la~~~----g~~---~~~~~~~Gs~a~~  130 (285)
                      +..+++|..+.+      ..+.+.+.+++.+... +...|.......++++.+++++    +.+   .+++++||++|+.
T Consensus        37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~  116 (418)
T 3rq1_A           37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIH  116 (418)
T ss_dssp             GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHH
T ss_pred             CCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHHH
Confidence            346788888764      3367788888876543 2345665556788888888875    456   6799999999999


Q ss_pred             HHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413         131 IAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVC  209 (285)
Q Consensus       131 ~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~  209 (285)
                      .++++++ ++||+|+++.++|.......         ...|.+++.++.. +++.+|++++++++++...  ....++|+
T Consensus       117 ~~~~~l~-~~gd~Vl~~~p~~~~~~~~~---------~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~--~~~~~~vi  184 (418)
T 3rq1_A          117 HLIHNYT-EPGDEVLTADWYWGAYRVIC---------SDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAA--KQTNVVVI  184 (418)
T ss_dssp             HHHHHHS-CTTCEEEEESSCCTHHHHHH---------HHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHH--HCSEEEEE
T ss_pred             HHHHHhc-CCCCEEEECCCCchhHHHHH---------HHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhc--cCCCEEEE
Confidence            9999987 68999999888775543322         2448888888863 4567899999999974100  01345899


Q ss_pred             Eecc-cCCCCeeeCCHHHHHHHHHHHH------HcCCeEEEeCccCChh-------hhc---cc--CC---eEEEecccc
Q psy5413         210 VENT-HNYCGGTVLPMQWLRELKARCQ------EHNIPVHMDGARLPLA-------EVC---AS--VD---TVMFCLSKG  267 (285)
Q Consensus       210 i~~~-~n~~gG~~~~~~~l~~i~~la~------~~gi~li~Dea~~~~~-------~~~---~~--~d---v~~~s~sK~  267 (285)
                      +++| +||| |.+++.+++++|+++|+      +||+++|+||+|..+.       .+.   ..  -+   +++.|+||.
T Consensus       185 ~~~p~~NPt-G~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~  263 (418)
T 3rq1_A          185 FNTPGNNPT-GYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKG  263 (418)
T ss_dssp             EECSSCTTT-CCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTT
T ss_pred             EeCCCCCCC-CCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCC
Confidence            9999 9999 99999999999999999      8999999999986221       111   11  13   458899999


Q ss_pred             cCc--ceeEEeec---Cccccc
Q psy5413         268 LGA--PVGSILAG---PEEFIQ  284 (285)
Q Consensus       268 l~~--p~gg~~~~---~~~~i~  284 (285)
                      +++  .+.|++++   ++++++
T Consensus       264 ~~~~G~r~G~~~~~~~~~~~~~  285 (418)
T 3rq1_A          264 FTMYGQRVGAMIGISDDEEIAD  285 (418)
T ss_dssp             TTCCSSCCEEEEEEESSHHHHH
T ss_pred             CcCcCCcceEEEEEeCCHHHHH
Confidence            864  45567766   776654

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.87  E-value=1.3e-21  Score=174.34  Aligned_cols=199  Identities=11%  Similarity=0.053  Sum_probs=147.0

Q ss_pred             CCeeeeeccCCcC-CCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCC
Q psy5413          65 NIRTVDIRSDTIS-KPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRD  141 (285)
Q Consensus        65 ~~~~~~~~~~~~~-~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g  141 (285)
                      ++.++||.++... .+++++.+++.++......|. .+...++++.++++++.+  .+++++||++++..+++++   +|
T Consensus        23 ~~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~-~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~---~g   98 (364)
T 1lc5_A           23 PDQLLDFSANINPLGMPVSVKRALIDNLDCIERYP-DADYFHLHQALARHHQVPASWILAGNGETESIFTVASGL---KP   98 (364)
T ss_dssp             GGGSEECSSCCCTTCCCHHHHHHHHHTGGGGGSCC-CTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH---CC
T ss_pred             ccceEEeccccCCCCCCHHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc---CC
Confidence            4568899876543 378899999988765434554 345789999999999864  5799999999999999986   56


Q ss_pred             CeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCC-HHHHHHHhcccccccCCceEEEEEecccCCCCee
Q psy5413         142 SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFD-LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT  220 (285)
Q Consensus       142 ~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d-~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~  220 (285)
                      ++|++..++|......   .      ...|.+++.++.++...++ ++++.+.+.+       ++++|++++|+||+ |.
T Consensus        99 d~vl~~~p~y~~~~~~---~------~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~-------~~~~v~i~~p~npt-G~  161 (364)
T 1lc5_A           99 RRAMIVTPGFAEYGRA---L------AQSGCEIRRWSLREADGWQLTDAILEALTP-------DLDCLFLCTPNNPT-GL  161 (364)
T ss_dssp             SEEEEEESCCTHHHHH---H------HHTTCEEEEEECCGGGTTCCCTTHHHHCCT-------TCCEEEEESSCTTT-CC
T ss_pred             CeEEEeCCCcHHHHHH---H------HHcCCeEEEEeCCcccccchhHHHHHhccC-------CCCEEEEeCCCCCC-CC
Confidence            8888877766443321   1      2347788888875322233 4555555544       68899999999999 89


Q ss_pred             eCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc--ccCCeEEEecccccCc--ceeEEee-cCccccc
Q psy5413         221 VLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC--ASVDTVMFCLSKGLGA--PVGSILA-GPEEFIQ  284 (285)
Q Consensus       221 ~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~--~~~dv~~~s~sK~l~~--p~gg~~~-~~~~~i~  284 (285)
                      ++|.+++++|+++|++||+++|+||+|..+.       ...  ...++++.|+||+++.  .+.|+++ .++++++
T Consensus       162 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~  237 (364)
T 1lc5_A          162 LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMA  237 (364)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHH
T ss_pred             CCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHH
Confidence            9999999999999999999999999987321       111  2345669999999973  4557777 8877653

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.87  E-value=1.1e-21  Score=175.30  Aligned_cols=196  Identities=14%  Similarity=0.088  Sum_probs=142.0

Q ss_pred             eeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCC------CcEEEcCChHHHHHHHHHHccc--cC
Q psy5413          69 VDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGK------EAAIFVPSGTMGNLIAIMTHCD--RR  140 (285)
Q Consensus        69 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~------~~~~~~~~Gs~a~~~al~~~~~--~~  140 (285)
                      +.|..+ +...++++.+++.+....+..........++++.++++++.      +.+++++||++|+..+++++..  ++
T Consensus         7 ~~~~p~-p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~   85 (385)
T 2bkw_A            7 TLLIPG-PIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAP   85 (385)
T ss_dssp             EECSSS-SCCCCHHHHHTTSCCCCCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCS
T ss_pred             eeecCC-CcCchHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCC
Confidence            444443 45678899999887654321000112467888999999875      3468999999999999998752  48


Q ss_pred             CCeEEec-CCcceeeecccccccccccccccceeeeeeec-CCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCC
Q psy5413         141 DSEIIVG-DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN-QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCG  218 (285)
Q Consensus       141 g~~vi~~-~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~g  218 (285)
                      |++|++. .+++.....  ...      ...|.+++.++. ++++.+|+++|++++++.      ++++|++++++|++ 
T Consensus        86 gd~vlv~~~~~~~~~~~--~~~------~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~~v~~~~~~npt-  150 (385)
T 2bkw_A           86 NKNVLVVSTGTFSDRFA--DCL------RSYGAQVDVVRPLKIGESVPLELITEKLSQN------SYGAVTVTHVDTST-  150 (385)
T ss_dssp             CCEEEEECSSHHHHHHH--HHH------HHTTCEEEEECCSSTTSCCCHHHHHHHHHHS------CCSEEEEESEETTT-
T ss_pred             CCeEEEEcCCcchHHHH--HHH------HHcCCceEEEecCCCCCCCCHHHHHHHHhcC------CCCEEEEEccCCCc-
Confidence            8988765 433322210  111      234788888887 677779999999999752      57899999999999 


Q ss_pred             eeeCCHHHHHHHHHHHHHc--CCeEEEeCccC-Chh--hhc-ccCCeEEEecccccCccee-EEeecCcccc
Q psy5413         219 GTVLPMQWLRELKARCQEH--NIPVHMDGARL-PLA--EVC-ASVDTVMFCLSKGLGAPVG-SILAGPEEFI  283 (285)
Q Consensus       219 G~~~~~~~l~~i~~la~~~--gi~li~Dea~~-~~~--~~~-~~~dv~~~s~sK~l~~p~g-g~~~~~~~~i  283 (285)
                      |.++|   +++|+++|++|  |+++|+||+|+ +..  .+. .+.|+++.|+||++++|.| |+++.+++++
T Consensus       151 G~~~~---l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~  219 (385)
T 2bkw_A          151 AVLSD---LKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFM  219 (385)
T ss_dssp             TEECC---HHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHH
T ss_pred             CeEcC---HHHHHHHHHhhCCCCEEEEECccccCCccccccccCceEEEecCccccccCCcceEEEEcHHHH
Confidence            89999   99999999999  99999999987 211  111 2578899999999887433 6777776554

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.87  E-value=2.3e-21  Score=174.89  Aligned_cols=205  Identities=20%  Similarity=0.165  Sum_probs=142.4

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCC---CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcc
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD---DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~---~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~  137 (285)
                      |++++||.++    +.++++|++.+++.++....   ......+...++++.++++++.+.+++++||++|++.++++++
T Consensus        38 g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~~a~~~al~~~~  117 (406)
T 4adb_A           38 GKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLAR  117 (406)
T ss_dssp             CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHH
T ss_pred             CCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhCCCCeEEEeCcHHHHHHHHHHHHH
Confidence            5677888765    33457899999998876531   1222467799999999999999999999999999999999876


Q ss_pred             cc------CC-CeEEec-CCcceeeeccccccccccccc---ccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceE
Q psy5413         138 DR------RD-SEIIVG-DCSHIMLWEQGGASQTSVYSQ---IGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       138 ~~------~g-~~vi~~-~~~h~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                      ..      +| ++|++. ..+|.+............+..   ..+..+..++.     .|+++|++++++       +++
T Consensus       118 ~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~-------~~~  185 (406)
T 4adb_A          118 KFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-----NDINSASALIDD-------STC  185 (406)
T ss_dssp             HHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-----TCHHHHHTTCST-------TEE
T ss_pred             HHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-----CcHHHHHHHhcC-------CeE
Confidence            42      55 677765 455655432221110111100   11123333333     389999999976       899


Q ss_pred             EEEEecccCCCCeee-CCHHHHHHHHHHHHHcCCeEEEeCccCChhh---------hcccCCeEEEecccccCc-ceeEE
Q psy5413         207 LVCVENTHNYCGGTV-LPMQWLRELKARCQEHNIPVHMDGARLPLAE---------VCASVDTVMFCLSKGLGA-PVGSI  275 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~-~~~~~l~~i~~la~~~gi~li~Dea~~~~~~---------~~~~~dv~~~s~sK~l~~-p~gg~  275 (285)
                      +|+++ |+|++||.+ ++.+++++|+++|++||++||+||+|+++..         .....|++  ++||++++ .++|+
T Consensus       186 ~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~~G~r~G~  262 (406)
T 4adb_A          186 AVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLL--TTAKALGGGFPVGA  262 (406)
T ss_dssp             EEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEE
T ss_pred             EEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEE--EechhhcCCCCeEE
Confidence            99999 788885554 3889999999999999999999999973311         11234554  67999976 45677


Q ss_pred             eecCccccc
Q psy5413         276 LAGPEEFIQ  284 (285)
Q Consensus       276 ~~~~~~~i~  284 (285)
                      ++.++++++
T Consensus       263 ~~~~~~~~~  271 (406)
T 4adb_A          263 LLATEECAR  271 (406)
T ss_dssp             EEECHHHHH
T ss_pred             EEEcHHHHh
Confidence            888777654

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.86  E-value=8.9e-22  Score=176.88  Aligned_cols=192  Identities=14%  Similarity=0.098  Sum_probs=146.0

Q ss_pred             ccCCcCCCcHHHHHHHHhcccCCCCcc--CChhHHHHHHHHHhHcCCC---cEEEcCChHHHHHHHHHHccccCCCeEEe
Q psy5413          72 RSDTISKPTMEMKNYMFNCEVGDDVYL--EDPTCKELQEKAAKLAGKE---AAIFVPSGTMGNLIAIMTHCDRRDSEIIV  146 (285)
Q Consensus        72 ~~~~~~~~~~~v~~a~~~~~~~~~~y~--~~~~~~~l~~~la~~~g~~---~~~~~~~Gs~a~~~al~~~~~~~g~~vi~  146 (285)
                      .+.++...++++.+++.+....+  |.  ......++++.+++++|.+   .+++++||++|+..++.+++ ++|++|++
T Consensus        22 ~~~~p~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~-~~gd~vl~   98 (396)
T 2ch1_A           22 MGPGPSNCSKRVLTAMTNTVLSN--FHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL-EEGDRVLI   98 (396)
T ss_dssp             CSSSSCCCCHHHHHHTTSCCCCT--TCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             ecCCCCCCCHHHHHHhccccccC--CChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc-CCCCeEEE
Confidence            34555667899999998765432  32  1235889999999999875   36799999999999999987 58999999


Q ss_pred             cCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHH
Q psy5413         147 GDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW  226 (285)
Q Consensus       147 ~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~  226 (285)
                      +.++|.... .....      ...|.+++.++.++++.+|+++|++++++.      ++++|++++++||+ |.++|   
T Consensus        99 ~~~~~~~~~-~~~~~------~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~------~~~~v~~~~~~npt-G~~~~---  161 (396)
T 2ch1_A           99 AVNGIWAER-AVEMS------ERYGADVRTIEGPPDRPFSLETLARAIELH------QPKCLFLTHGDSSS-GLLQP---  161 (396)
T ss_dssp             EESSHHHHH-HHHHH------HHTTCEEEEEECCTTSCCCHHHHHHHHHHH------CCSEEEEESEETTT-TEECC---
T ss_pred             EcCCcccHH-HHHHH------HHcCCceEEecCCCCCCCCHHHHHHHHHhC------CCCEEEEECCCCCC-ceecC---
Confidence            887775542 11122      345888888888777789999999999762      57899999999999 89999   


Q ss_pred             HHHHHHHHHHcCCeEEEeCccC-Chhh---hcccCCeEEEecccccCcc-eeEEeecCcccc
Q psy5413         227 LRELKARCQEHNIPVHMDGARL-PLAE---VCASVDTVMFCLSKGLGAP-VGSILAGPEEFI  283 (285)
Q Consensus       227 l~~i~~la~~~gi~li~Dea~~-~~~~---~~~~~dv~~~s~sK~l~~p-~gg~~~~~~~~i  283 (285)
                      +++|+++|++||+++|+||+|. +...   ...+.|+++.+++|+++++ ..|+++.+++++
T Consensus       162 ~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~  223 (396)
T 2ch1_A          162 LEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKAL  223 (396)
T ss_dssp             CTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHH
T ss_pred             HHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEcCCccccCCCCeEEEEECHHHH
Confidence            8999999999999999999988 1111   1124688899999998873 336776666544

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.86  E-value=3.4e-21  Score=173.80  Aligned_cols=162  Identities=20%  Similarity=0.165  Sum_probs=132.9

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .++...++++.+++++|.+.+++++||++|++.++++++ ++|++|++..+.|..+.... ...      ...|.+++.+
T Consensus        64 ~~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~~al~~~~-~~gd~Vi~~~~~y~~~~~~~~~~~------~~~g~~~~~v  136 (392)
T 3qhx_A           64 GNPTRTALEAALAAVEDAAFGRAFSSGMAAADCALRAML-RPGDHVVIPDDAYGGTFRLIDKVF------TGWNVEYTPV  136 (392)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHTG------GGGTCEEEEE
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCcchHHHHHHHHH------HhcCcEEEEe
Confidence            568899999999999999989999999999999999876 68999999887775433211 111      3457888888


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---hhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---EVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---~~~  254 (285)
                      +.+     |++++++++++       ++++|++++|+|++ |.+.|   +++|+++|++||+++|+|++|+...   ...
T Consensus       137 ~~~-----d~~~l~~~i~~-------~~~~v~~~~~~npt-G~~~~---l~~i~~la~~~g~~li~D~~~~~~~~~~~~~  200 (392)
T 3qhx_A          137 ALA-----DLDAVRAAIRP-------TTRLIWVETPTNPL-LSIAD---IAGIAQLGADSSAKVLVDNTFASPALQQPLS  200 (392)
T ss_dssp             CTT-----CHHHHHHHCCT-------TEEEEEEESSCTTT-CCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCCGGG
T ss_pred             CCC-----CHHHHHHhhCC-------CCeEEEEECCCCCC-cEEec---HHHHHHHHHHcCCEEEEECCCcccccCChHH
Confidence            763     89999999987       89999999999999 89999   9999999999999999999988321   233


Q ss_pred             ccCCeEEEecccccCc---ceeEEeecC-cccc
Q psy5413         255 ASVDTVMFCLSKGLGA---PVGSILAGP-EEFI  283 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~---p~gg~~~~~-~~~i  283 (285)
                      .+.|+++.|++|++++   +++|+++.+ ++++
T Consensus       201 ~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~  233 (392)
T 3qhx_A          201 LGADVVLHSTTKYIGGHSDVVGGALVTNDEELD  233 (392)
T ss_dssp             GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHH
T ss_pred             hCCcEEEEcCccccCCCCCceEEEEEECcHHHH
Confidence            5789999999999987   357888776 4543

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.86  E-value=2.7e-21  Score=177.35  Aligned_cols=216  Identities=15%  Similarity=0.082  Sum_probs=139.8

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCC---CCccCChhHHHHHHHHHhHcCCC-cEEEcCChHHHHHHHHHHc
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD---DVYLEDPTCKELQEKAAKLAGKE-AAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~---~~y~~~~~~~~l~~~la~~~g~~-~~~~~~~Gs~a~~~al~~~  136 (285)
                      |++++||.++    +.++++|++.+|+.+++...   .....++...++++.++++++.+ .++|++||++|++.+++++
T Consensus        48 g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~  127 (452)
T 3n5m_A           48 GKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIA  127 (452)
T ss_dssp             CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCCCCTTSEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHH
T ss_pred             CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHH
Confidence            5667777655    34557899999998877532   12234677899999999998643 2899999999999999998


Q ss_pred             ccc-------CCCeEEe-cCCcceeeeccccccccccccccc---ceeeeeeecCCC--C-CCC---------HHHHHHH
Q psy5413         137 CDR-------RDSEIIV-GDCSHIMLWEQGGASQTSVYSQIG---RVLMRGVTNQKD--G-TFD---------LDEMEAK  193 (285)
Q Consensus       137 ~~~-------~g~~vi~-~~~~h~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~--~-~~d---------~~~l~~~  193 (285)
                      +..       ++++|++ ...||+++...........+...+   ...+..++....  . ..|         +++|+++
T Consensus       128 ~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~  207 (452)
T 3n5m_A          128 RQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRV  207 (452)
T ss_dssp             HHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHH
T ss_pred             HHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHH
Confidence            732       4566666 456676553222111111111111   111222222111  1 112         8999999


Q ss_pred             hcccccccCCceEEEEEecc-cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCCeE--EEecc
Q psy5413         194 FSTADNIHCASTSLVCVENT-HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVDTV--MFCLS  265 (285)
Q Consensus       194 i~~~~~~~~~~~~~v~i~~~-~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~dv~--~~s~s  265 (285)
                      +++.   +.+++++|+++++ +| +|..+.+.+++++|+++|++||++||+||+|+++.     ...+..++.  +.++|
T Consensus       208 l~~~---~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~s  283 (452)
T 3n5m_A          208 MTWE---LSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMA  283 (452)
T ss_dssp             HHHH---CGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEEC
T ss_pred             HHhc---CCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEeec
Confidence            9721   2237999999999 89 84455588999999999999999999999988432     122333332  56788


Q ss_pred             cccCc--ceeEEeecCccccc
Q psy5413         266 KGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       266 K~l~~--p~gg~~~~~~~~i~  284 (285)
                      |++++  ...|++++++++++
T Consensus       284 K~l~~G~~~ig~~~~~~~i~~  304 (452)
T 3n5m_A          284 KGITSAYLPLSATAVKREIYE  304 (452)
T ss_dssp             GGGGTTSSCCEEEEEEHHHHG
T ss_pred             ccccCCCcceEEEEECHHHHH
Confidence            99875  23356666776654

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.86  E-value=4.1e-21  Score=173.46  Aligned_cols=162  Identities=20%  Similarity=0.231  Sum_probs=132.6

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .++...++++.+++++|.+..+++++|++|+..++++++ ++|++|+++.+.|..+.... ...      ...|.+++.+
T Consensus        63 ~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~-~~gd~vl~~~~~~~~~~~~~~~~~------~~~g~~~~~~  135 (398)
T 1gc0_A           63 SNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLL-RPGDEVLLGNTLYGCTFAFLHHGI------GEFGVKLRHV  135 (398)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCSHHHHHHHHTG------GGGTCEEEEE
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-cCCCEEEEeCCCchhHHHHHHHHH------HHcCCEEEEE
Confidence            578899999999999999888999999999999999986 58999999888776543321 111      2347777777


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---hhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---EVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---~~~  254 (285)
                      +..     |+++++++|++       ++++|++++|+|++ |.++|   +++|+++|++||+++|+||+|....   .+.
T Consensus       136 ~~~-----d~~~l~~~i~~-------~~~~v~~~~~~npt-G~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~  199 (398)
T 1gc0_A          136 DMA-----DLQALEAAMTP-------ATRVIYFESPANPN-MHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQRPLE  199 (398)
T ss_dssp             CTT-----CHHHHHHHCCT-------TEEEEEEESSCTTT-CCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCCGGG
T ss_pred             CCC-----CHHHHHHhcCC-------CCeEEEEECCCCCC-ccccc---HHHHHHHHHHcCCEEEEECCCcccccCCchh
Confidence            652     89999999987       89999999999999 89998   9999999999999999999998221   223


Q ss_pred             ccCCeEEEecccccCcc---eeEEeecCcccc
Q psy5413         255 ASVDTVMFCLSKGLGAP---VGSILAGPEEFI  283 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~p---~gg~~~~~~~~i  283 (285)
                      .+.|+++.|+||++++|   .||+++.+++++
T Consensus       200 ~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~  231 (398)
T 1gc0_A          200 LGADLVVHSATKYLSGHGDITAGIVVGSQALV  231 (398)
T ss_dssp             GTCSEEEEETTTTTTCSSSCCCEEEEECHHHH
T ss_pred             hCceEEEECCccccCCCCCCeEEEEEEChHHH
Confidence            46899999999999974   478888876654

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.86  E-value=8.2e-22  Score=175.93  Aligned_cols=187  Identities=15%  Similarity=0.108  Sum_probs=145.8

Q ss_pred             eeeeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHc-cccCCCeEE
Q psy5413          67 RTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTH-CDRRDSEII  145 (285)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~-~~~~g~~vi  145 (285)
                      .++++..+.+....  +.+++.+..... .|...+...++++.++++++.+.+++++||++|++.+++++ + ++|++|+
T Consensus         7 ~~~~l~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~-~~gd~v~   82 (374)
T 3uwc_A            7 PYSYLERQFADIEP--YLNDLREFIKTA-DFTLGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNI-GAGDEVI   82 (374)
T ss_dssp             CSCCHHHHTSSCHH--HHHHHHHHHHHT-CCSSCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTC-CTTCEEE
T ss_pred             eeeccccCCCCchH--HHHHHHHHHHcC-CcccChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCC-CCCCEEE
Confidence            34555555544332  777777655432 46667889999999999999998999999999999999998 5 6899999


Q ss_pred             ecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHH
Q psy5413         146 VGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQ  225 (285)
Q Consensus       146 ~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~  225 (285)
                      ++.++|.......         ...|.+++.++.++++.+|++++++++++       ++++|+   ++|++ |.+.+  
T Consensus        83 ~~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~v~---~~n~~-G~~~~--  140 (374)
T 3uwc_A           83 TCANTFIASVGAI---------VQAGATPVLVDSENGYVIDPEKIEAAITD-------KTKAIM---PVHYT-GNIAD--  140 (374)
T ss_dssp             EESSSCHHHHHHH---------HHTTCEEEEECBCTTSSBCGGGTGGGCCT-------TEEEEC---CBCGG-GCCCC--
T ss_pred             ECCCccHHHHHHH---------HHcCCEEEEEecCCCCCcCHHHHHHhCCC-------CceEEE---EeCCc-CCcCC--
Confidence            9988886654422         23488888888766777899999999987       788888   67777 88888  


Q ss_pred             HHHHHHHHHHHcCCeEEEeCccCCh-h----hhcccCCeEEEecc--cccCc-ceeEEeecCc
Q psy5413         226 WLRELKARCQEHNIPVHMDGARLPL-A----EVCASVDTVMFCLS--KGLGA-PVGSILAGPE  280 (285)
Q Consensus       226 ~l~~i~~la~~~gi~li~Dea~~~~-~----~~~~~~dv~~~s~s--K~l~~-p~gg~~~~~~  280 (285)
                       +++|+++|++||+++|+||+|+.. .    ......|+++.|+|  |++++ +.||+++.++
T Consensus       141 -~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~  202 (374)
T 3uwc_A          141 -MPALAKIAKKHNLHIVEDACQTILGRINDKFVGSWGQFACFSLHPLKNLNVWSDAGVIITHS  202 (374)
T ss_dssp             -HHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECSSSSSSCCSSCCEEEEESC
T ss_pred             -HHHHHHHHHHcCCEEEEeCCCccCceeCCeeccccccEEEEeCCCCCcCCccceeEEEEeCC
Confidence             999999999999999999998821 1    12223689999977  99988 5677777554

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.86  E-value=7e-21  Score=172.39  Aligned_cols=163  Identities=18%  Similarity=0.190  Sum_probs=132.9

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      ..+...++++.+++++|.+..+++++|++|+..++++++ ++||+|+++++.|..+.... ...      ...|.+++.+
T Consensus        60 ~~~~~~~l~~~ia~~~g~~~~i~~~~g~~ai~~~~~~l~-~~gd~Vl~~~~~y~~~~~~~~~~~------~~~g~~~~~v  132 (404)
T 1e5e_A           60 GNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTIL-KAGDHLISDECLYGCTHALFEHAL------TKFGIQVDFI  132 (404)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHH------HHTTCEEEEE
T ss_pred             cChHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHh-CCCCEEEEeCCCchhHHHHHHHHH------HHcCCEEEEE
Confidence            356778999999999999888999999999999999876 58999999888876543311 011      3458888888


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH-cCCeEEEeCccCChh---hh
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE-HNIPVHMDGARLPLA---EV  253 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~-~gi~li~Dea~~~~~---~~  253 (285)
                      +..     |++++++++++       ++++|++++|+||+ |.+++   +++|+++|++ ||+++|+||+|....   .+
T Consensus       133 ~~~-----d~~~l~~~i~~-------~t~~v~l~~p~Npt-G~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~~~~  196 (404)
T 1e5e_A          133 NTA-----IPGEVKKHMKP-------NTKIVYFETPANPT-LKIID---MERVCKDAHSQEGVLVIADNTFCSPMITNPV  196 (404)
T ss_dssp             CTT-----STTHHHHHCCT-------TEEEEEEESSCTTT-CCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTCCGG
T ss_pred             CCC-----CHHHHHHhcCC-------CCcEEEEECCCCCC-CcccC---HHHHHHHHHhhcCCEEEEECCCchhhhCCcc
Confidence            763     78899999987       79999999999999 89998   9999999999 999999999998322   22


Q ss_pred             cccCCeEEEecccccCcc--e-eEEeecCccccc
Q psy5413         254 CASVDTVMFCLSKGLGAP--V-GSILAGPEEFIQ  284 (285)
Q Consensus       254 ~~~~dv~~~s~sK~l~~p--~-gg~~~~~~~~i~  284 (285)
                      ..+.|+++.|+||+++++  + +|++++++++++
T Consensus       197 ~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~  230 (404)
T 1e5e_A          197 DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQ  230 (404)
T ss_dssp             GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHH
T ss_pred             ccCCEEEEEcCccccCCCCCCeEEEEEECHHHHH
Confidence            346899999999999874  2 588888877654

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.86  E-value=8e-21  Score=172.62  Aligned_cols=215  Identities=15%  Similarity=0.040  Sum_probs=141.3

Q ss_pred             CCeeeeeccCC----cCCC-cHHHHHHHHhcccCCCC----ccCChhHHHHHHHHHhHcCCC---cEEEcCChHHHHHHH
Q psy5413          65 NIRTVDIRSDT----ISKP-TMEMKNYMFNCEVGDDV----YLEDPTCKELQEKAAKLAGKE---AAIFVPSGTMGNLIA  132 (285)
Q Consensus        65 ~~~~~~~~~~~----~~~~-~~~v~~a~~~~~~~~~~----y~~~~~~~~l~~~la~~~g~~---~~~~~~~Gs~a~~~a  132 (285)
                      |+.++||.++.    .+++ +|++.+++.+++.....    .+.++...++++.+++++|.+   .++|++||++|++.+
T Consensus        41 g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~a  120 (419)
T 2eo5_A           41 GNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEAS  120 (419)
T ss_dssp             SCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHH
T ss_pred             CCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHH
Confidence            45678887654    2345 79999999887653211    134567889999999999853   579999999999999


Q ss_pred             HHHccccCCCeEEecC-Ccceeeeccccccccc-ccccc---cceeeeeeecCCCCC----------------CCHHHHH
Q psy5413         133 IMTHCDRRDSEIIVGD-CSHIMLWEQGGASQTS-VYSQI---GRVLMRGVTNQKDGT----------------FDLDEME  191 (285)
Q Consensus       133 l~~~~~~~g~~vi~~~-~~h~~~~~~~~~~~~~-~~~~~---~g~~~~~~~~~~~~~----------------~d~~~l~  191 (285)
                      ++++...+|++|++.+ .+|.++.....+.... .+...   ....++.++.+.++.                +|+++|+
T Consensus       121 i~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~  200 (419)
T 2eo5_A          121 IKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIE  200 (419)
T ss_dssp             HHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHH
Confidence            9986543488888765 5665543222111000 11111   112344555433221                3688999


Q ss_pred             -HHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----hcc----cCCeEE
Q psy5413         192 -AKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE-----VCA----SVDTVM  261 (285)
Q Consensus       192 -~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----~~~----~~dv~~  261 (285)
                       +++++..  +.+++++|++++.+|++|..+.+.+++++|+++|++||++||+||+|+++..     ...    ..|  +
T Consensus       201 ~~~i~~~~--~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d--~  276 (419)
T 2eo5_A          201 DYIFVNLV--PPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPD--V  276 (419)
T ss_dssp             HTHHHHTC--CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS--E
T ss_pred             HHHHhhcc--CCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCC--E
Confidence             8886410  0126889999888888733577899999999999999999999999984321     112    223  4


Q ss_pred             EecccccCc--ceeEEeecCcccc
Q psy5413         262 FCLSKGLGA--PVGSILAGPEEFI  283 (285)
Q Consensus       262 ~s~sK~l~~--p~gg~~~~~~~~i  283 (285)
                      .++||++++  .+.|+++++++++
T Consensus       277 ~t~sK~~~~G~~riG~~~~~~~~~  300 (419)
T 2eo5_A          277 ITLAKALGGGIMPIGATIFRKDLD  300 (419)
T ss_dssp             EEECGGGGTTTSCCEEEEEEGGGC
T ss_pred             EEecccccCCccceEEEEEchHhh
Confidence            578999875  3346676667654

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.86  E-value=2.8e-21  Score=177.45  Aligned_cols=218  Identities=13%  Similarity=0.136  Sum_probs=141.0

Q ss_pred             cCCeeeeeccC----CcCCCcHHHHHHHHhcccCCC----CccCChhHHHHHHHHHhHcC---CCcEEEcCChHHHHHHH
Q psy5413          64 VNIRTVDIRSD----TISKPTMEMKNYMFNCEVGDD----VYLEDPTCKELQEKAAKLAG---KEAAIFVPSGTMGNLIA  132 (285)
Q Consensus        64 ~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~----~y~~~~~~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~a  132 (285)
                      .|++++||.++    +.++.+|++.+++.+++....    ..+..+...++++.++++++   .+.++|++||++|++.|
T Consensus        59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~A  138 (451)
T 3oks_A           59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENA  138 (451)
T ss_dssp             TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHH
Confidence            36778888754    335579999999998775422    12356778899999999985   35679999999999999


Q ss_pred             HHHccccCC-CeEEe-cCCcceeeecccccccc-cccccc-----cceeeeeeecC-------CC----CCCCHHHHHHH
Q psy5413         133 IMTHCDRRD-SEIIV-GDCSHIMLWEQGGASQT-SVYSQI-----GRVLMRGVTNQ-------KD----GTFDLDEMEAK  193 (285)
Q Consensus       133 l~~~~~~~g-~~vi~-~~~~h~~~~~~~~~~~~-~~~~~~-----~g~~~~~~~~~-------~~----~~~d~~~l~~~  193 (285)
                      +++++..+| +.|++ ...||+.+.....+... ..|...     .+...+.++..       .+    ...+++.+++.
T Consensus       139 lk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  218 (451)
T 3oks_A          139 VKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITV  218 (451)
T ss_dssp             HHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHH
Confidence            999874355 45554 56777766433222111 112111     13333333310       00    01235555555


Q ss_pred             hcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCCeE--EEeccc
Q psy5413         194 FSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVDTV--MFCLSK  266 (285)
Q Consensus       194 i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~dv~--~~s~sK  266 (285)
                      +++..  +.+++++|+++++++.+|....+.+++++|+++|++||++||+||+|+++.     ...+..++.  +.+++|
T Consensus       219 l~~~~--~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK  296 (451)
T 3oks_A          219 IDKQI--GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAK  296 (451)
T ss_dssp             HHHHT--CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECG
T ss_pred             HHhhc--CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehh
Confidence            54311  123789999999888875566778999999999999999999999988442     122222322  558889


Q ss_pred             ccCc--ceeEEeecCccccc
Q psy5413         267 GLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       267 ~l~~--p~gg~~~~~~~~i~  284 (285)
                      ++++  |+| ++++++++++
T Consensus       297 ~l~~G~~iG-~v~~~~~~~~  315 (451)
T 3oks_A          297 GIAGGLPLS-AVTGRAEIMD  315 (451)
T ss_dssp             GGGTTSSCE-EEEEEHHHHT
T ss_pred             hhhCCcceE-EEEECHHHHh
Confidence            9977  555 5566777654

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.86  E-value=2.1e-21  Score=178.32  Aligned_cols=214  Identities=14%  Similarity=0.148  Sum_probs=140.0

Q ss_pred             cCCeeeeeccC----CcCCCcHHHHHHHHhcccC--CC--CccCChhHHHHHHHHHhHcC---CCcEEEcCChHHHHHHH
Q psy5413          64 VNIRTVDIRSD----TISKPTMEMKNYMFNCEVG--DD--VYLEDPTCKELQEKAAKLAG---KEAAIFVPSGTMGNLIA  132 (285)
Q Consensus        64 ~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~--~~--~y~~~~~~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~a  132 (285)
                      .|++++||.++    +.++.+|+|.+|+.+++..  +.  ..+.++...+|++.++++++   .+.++|++||++|++.|
T Consensus        62 ~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~a  141 (453)
T 4ffc_A           62 DGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENA  141 (453)
T ss_dssp             TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHH
Confidence            46888998865    3455799999999887653  22  22456778899999999986   35679999999999999


Q ss_pred             HHHccccCC-CeEEe-cCCcceeeeccccccccc-ccccc-----cceeeeeeecC--CCCCCC--------HHHHHHHh
Q psy5413         133 IMTHCDRRD-SEIIV-GDCSHIMLWEQGGASQTS-VYSQI-----GRVLMRGVTNQ--KDGTFD--------LDEMEAKF  194 (285)
Q Consensus       133 l~~~~~~~g-~~vi~-~~~~h~~~~~~~~~~~~~-~~~~~-----~g~~~~~~~~~--~~~~~d--------~~~l~~~i  194 (285)
                      +++++..+| +.|++ ...||+.+.....+.... .|...     .+...+.++..  +....+        ++.|++.+
T Consensus       142 lk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i  221 (453)
T 4ffc_A          142 IKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQI  221 (453)
T ss_dssp             HHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhc
Confidence            998764344 45555 567777664332221110 11111     13333333321  101111        35555555


Q ss_pred             cccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----hcccCCeE--EEecccc
Q psy5413         195 STADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE-----VCASVDTV--MFCLSKG  267 (285)
Q Consensus       195 ~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----~~~~~dv~--~~s~sK~  267 (285)
                      ..      .++++|++++.++.+|..+.+.+++++|+++|++||++||+||+|+++..     ..+..++.  +.+++|+
T Consensus       222 ~~------~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~  295 (453)
T 4ffc_A          222 GA------QSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKG  295 (453)
T ss_dssp             CG------GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGG
T ss_pred             CC------CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhh
Confidence            43      26899999998887755667889999999999999999999999884421     11222222  5678899


Q ss_pred             cCc--ceeEEeecCccccc
Q psy5413         268 LGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       268 l~~--p~gg~~~~~~~~i~  284 (285)
                      +++  |+| ++++++++++
T Consensus       296 ~~~G~~~G-~~~~~~~i~~  313 (453)
T 4ffc_A          296 IAGGMPLS-AVTGRAELMD  313 (453)
T ss_dssp             GGTTSSCE-EEEEEHHHHT
T ss_pred             hcCCcCeE-EEEECHHHHh
Confidence            976  555 5666777654

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.86  E-value=7.6e-21  Score=170.64  Aligned_cols=178  Identities=16%  Similarity=0.133  Sum_probs=140.5

Q ss_pred             cHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHc-cccCCCeEEecCCcceeeecc
Q psy5413          80 TMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTH-CDRRDSEIIVGDCSHIMLWEQ  157 (285)
Q Consensus        80 ~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~-~~~~g~~vi~~~~~h~~~~~~  157 (285)
                      .+++.+++.+.+.. ...|...+...++++.+++++|.+..+++++|++|+..+++++ + ++|++|+++.+.|......
T Consensus        16 ~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~-~~gd~Vi~~~~~~~~~~~~   94 (388)
T 1b9h_A           16 DDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGV-GPGTEVIVPAFTFISSSQA   94 (388)
T ss_dssp             CHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTC-CTTCEEEEESSSCTHHHHH
T ss_pred             CHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCC-CCcCEEEECCCccHHHHHH
Confidence            47888888877653 2345567789999999999999988888889999999999998 5 6899999988887665432


Q ss_pred             cccccccccccccceeeeeeecCCC-CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH
Q psy5413         158 GGASQTSVYSQIGRVLMRGVTNQKD-GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE  236 (285)
Q Consensus       158 ~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~  236 (285)
                      .         ...|.+++.++.+++ +.+|+++|+++|++       ++++|+   |+|++ |.+.+   +++|+++|++
T Consensus        95 ~---------~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~-------~~~~v~---~~n~t-G~~~~---l~~i~~la~~  151 (388)
T 1b9h_A           95 A---------QRLGAVTVPVDVDAATYNLDPEAVAAAVTP-------RTKVIM---PVHMA-GLMAD---MDALAKISAD  151 (388)
T ss_dssp             H---------HHTTCEEEEECBCTTTCCBCHHHHHHHCCT-------TEEEEC---CBCGG-GCCCC---HHHHHHHHHH
T ss_pred             H---------HHcCCEEEEEecCCCcCCCCHHHHHHhcCc-------CceEEE---EeCCc-cCcCC---HHHHHHHHHH
Confidence            2         234888888887653 67899999999976       788888   77888 88888   9999999999


Q ss_pred             cCCeEEEeCccC-Chhh----hcccCCeEEEecc--cccCcceeEEeecCcc
Q psy5413         237 HNIPVHMDGARL-PLAE----VCASVDTVMFCLS--KGLGAPVGSILAGPEE  281 (285)
Q Consensus       237 ~gi~li~Dea~~-~~~~----~~~~~dv~~~s~s--K~l~~p~gg~~~~~~~  281 (285)
                      ||++||+|++|+ +...    .....|+.+.|+|  |++++++||+++.+++
T Consensus       152 ~~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~~~G~~~~~~~  203 (388)
T 1b9h_A          152 TGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDG  203 (388)
T ss_dssp             HTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTT
T ss_pred             cCCEEEEecchhcCCccCCeecccccceEEEEccCCCcccCCCeEEEEECCH
Confidence            999999999998 2211    1122257777766  8887778888887664

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.86  E-value=4e-21  Score=175.90  Aligned_cols=196  Identities=13%  Similarity=0.059  Sum_probs=144.0

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhccc------CCCCccCChhHHHHHHHHHhHc----C--CCcEEEcCChHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEV------GDDVYLEDPTCKELQEKAAKLA----G--KEAAIFVPSGTMGNLI  131 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~------~~~~y~~~~~~~~l~~~la~~~----g--~~~~~~~~~Gs~a~~~  131 (285)
                      ++++++|.++.+.. .+|.+.+++.++..      +...|+..+...+|++.+++++    +  .+.+++++|+++++..
T Consensus        68 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~  147 (449)
T 3qgu_A           68 DAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSKCDIAR  147 (449)
T ss_dssp             TCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHH
T ss_pred             CCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHH
Confidence            56889999887665 67799999887654      2235665566889999999997    3  3457899999999988


Q ss_pred             HHHHccccCCCeEEecCCcceeeeccccccccccccccccee----------eeeeecCCC--CCCCHHHHHHHhccccc
Q psy5413         132 AIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVL----------MRGVTNQKD--GTFDLDEMEAKFSTADN  199 (285)
Q Consensus       132 al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~--~~~d~~~l~~~i~~~~~  199 (285)
                      + ..++ ++||.|++++++|.........         .|.+          ++.++.+++  ...|++++     +   
T Consensus       148 ~-~~l~-~~gd~Vl~~~p~~~~~~~~~~~---------~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---  208 (449)
T 3qgu_A          148 I-QMMF-GSKPTVAVQDPSYPVYVDTSVM---------MGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----K---  208 (449)
T ss_dssp             H-HHHH-CSSSCEEEEESCCTHHHHHHHH---------HTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----C---
T ss_pred             H-HHHh-CCCCEEEEcCCCChhHHHHHHH---------cCCcccccccccceeEEEecccccCCcCChhHc-----C---
Confidence            8 6656 5899999988877554332222         2444          666665433  22333221     2   


Q ss_pred             ccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc-----ccCCeEEEecccc
Q psy5413         200 IHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC-----ASVDTVMFCLSKG  267 (285)
Q Consensus       200 ~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~-----~~~dv~~~s~sK~  267 (285)
                          ++++|++++|+||+ |.+++.+++++|+++|++||+++|+||+|..+.       .+.     ...++++.|+||+
T Consensus       209 ----~~~~v~l~~p~NPt-G~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~  283 (449)
T 3qgu_A          209 ----RTDIIFFCSPNNPT-GAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKY  283 (449)
T ss_dssp             ----CCSEEEEESSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGG
T ss_pred             ----CCCEEEEeCCCCCC-CCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhh
Confidence                68999999999999 899999999999999999999999999988211       111     2334669999999


Q ss_pred             cCc--ceeEEeecCccccc
Q psy5413         268 LGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       268 l~~--p~gg~~~~~~~~i~  284 (285)
                      ++.  .+.|++++++++++
T Consensus       284 ~g~~G~r~G~~~~~~~~~~  302 (449)
T 3qgu_A          284 AGFTGVRLGWTVVPKALKY  302 (449)
T ss_dssp             GTCTTCCCEEEECCTTCBC
T ss_pred             cCCccceeEEEecCHHHHh
Confidence            973  56678888887764

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.86  E-value=3e-21  Score=173.53  Aligned_cols=199  Identities=14%  Similarity=0.072  Sum_probs=145.8

Q ss_pred             CeeeeeccCCc------CCCcHHHHHHHHhccc--CCCCccCChhHHHHHHHHHhHc-CC----CcEEE--cCChHHHHH
Q psy5413          66 IRTVDIRSDTI------SKPTMEMKNYMFNCEV--GDDVYLEDPTCKELQEKAAKLA-GK----EAAIF--VPSGTMGNL  130 (285)
Q Consensus        66 ~~~~~~~~~~~------~~~~~~v~~a~~~~~~--~~~~y~~~~~~~~l~~~la~~~-g~----~~~~~--~~~Gs~a~~  130 (285)
                      +.+++|..+.+      ..+++.+.+++.++..  ....|.......++++.+++++ +.    +.+++  ++||++|++
T Consensus        26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~  105 (394)
T 2ay1_A           26 QGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALR  105 (394)
T ss_dssp             TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHH
T ss_pred             ccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHH
Confidence            45688887764      1357899999887643  2345665566789999999996 43    45677  999999999


Q ss_pred             HHHHHccc-cCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEE
Q psy5413         131 IAIMTHCD-RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       131 ~al~~~~~-~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                      .+++++.. .+|++|++..++|.......         ...|.+++.++..  +++.+|++++++++++.    ..++++
T Consensus       106 ~~~~~~~~~~~gd~vl~~~p~~~~~~~~~---------~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~----~~~~~~  172 (394)
T 2ay1_A          106 QALELARMANPDLRVFVSDPTWPNHVSIM---------NFMGLPVQTYRYFDAETRGVDFEGMKADLAAA----KKGDMV  172 (394)
T ss_dssp             HHHHHHHHHCTTCCEEEEESCCHHHHHHH---------HHHTCCEEEEECEETTTTEECHHHHHHHHHTC----CTTCEE
T ss_pred             HHHHHHHhcCCCCEEEEcCCCChhHHHHH---------HHcCCceEEEecccccCCccCHHHHHHHHHhC----CCCCEE
Confidence            99987652 37888998877665443211         2347777777763  45668999999999762    224788


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh--------h---hcc-cCCe-EEEecccccCc--ce
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA--------E---VCA-SVDT-VMFCLSKGLGA--PV  272 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~--------~---~~~-~~dv-~~~s~sK~l~~--p~  272 (285)
                      +++++|+||| |.+++.+++++|+++|++||+++|+||+|..+.        .   +.. +.++ ++.|+||+++.  .+
T Consensus       173 ~~~~~~~npt-G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r  251 (394)
T 2ay1_A          173 LLHGCCHNPT-GANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRER  251 (394)
T ss_dssp             EEESSSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGC
T ss_pred             EEeCCCCCCC-CCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCc
Confidence            8889999999 899999999999999999999999999988321        1   112 3344 48999999973  44


Q ss_pred             eEEeec
Q psy5413         273 GSILAG  278 (285)
Q Consensus       273 gg~~~~  278 (285)
                      .|+++.
T Consensus       252 iG~~~~  257 (394)
T 2ay1_A          252 TGCLLA  257 (394)
T ss_dssp             EEEEEE
T ss_pred             cceEEE
Confidence            455554

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.86  E-value=7.8e-21  Score=172.96  Aligned_cols=203  Identities=18%  Similarity=0.110  Sum_probs=137.6

Q ss_pred             eeeeccCCcCCCcHHHHHHHHhcccCCC-----Ccc----CChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHc
Q psy5413          68 TVDIRSDTISKPTMEMKNYMFNCEVGDD-----VYL----EDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        68 ~~~~~~~~~~~~~~~v~~a~~~~~~~~~-----~y~----~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~  136 (285)
                      .++|.......+++++++++.+......     .|.    ..+...++++.+++++|.+  .+++++||++|+..+++++
T Consensus        19 ~~~Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~   98 (432)
T 3a9z_A           19 KVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHST   98 (432)
T ss_dssp             CEECBTTTCCCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHH
T ss_pred             cEEeeCCccCCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHH
Confidence            3555555545778999999987654211     121    1123579999999999875  5799999999999999987


Q ss_pred             cc-------cCCCeEEecCCcceeeeccc-----cccc-c--cccccccceeeeeeecCC-CCCCCHHHHHHHhcccccc
Q psy5413         137 CD-------RRDSEIIVGDCSHIMLWEQG-----GASQ-T--SVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNI  200 (285)
Q Consensus       137 ~~-------~~g~~vi~~~~~h~~~~~~~-----~~~~-~--~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~  200 (285)
                      +.       ++|++|++..+++.......     -.+. .  ..+....|.+++.++.++ ++.+|+++|++++++    
T Consensus        99 ~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~----  174 (432)
T 3a9z_A           99 VRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRP----  174 (432)
T ss_dssp             HHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCT----
T ss_pred             HhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccC----
Confidence            52       37887777655542211000     0000 0  000123478888888754 667899999999987    


Q ss_pred             cCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC----------CeEEEeCccCCh----hhhcccCCeEEEeccc
Q psy5413         201 HCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN----------IPVHMDGARLPL----AEVCASVDTVMFCLSK  266 (285)
Q Consensus       201 ~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g----------i~li~Dea~~~~----~~~~~~~dv~~~s~sK  266 (285)
                         ++++|++++++|++ |.++|   +++|.++|+++|          +++|+||+|+..    .....+.|+++.|+||
T Consensus       175 ---~~~~v~~~~~~npt-G~~~~---~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~~d~~~~s~~K  247 (432)
T 3a9z_A          175 ---TTCLVTIMLANNET-GVIMP---ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHK  247 (432)
T ss_dssp             ---TEEEEECCSBCTTT-CBBCC---HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHCCSEEEEEGGG
T ss_pred             ---CceEEEEECcccCc-ccccC---HHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhcCCCEEEEehhH
Confidence               79999999999999 99999   889999999999          999999998721    1112368999999999


Q ss_pred             ccCcceeEEeecCccc
Q psy5413         267 GLGAPVGSILAGPEEF  282 (285)
Q Consensus       267 ~l~~p~gg~~~~~~~~  282 (285)
                      ++| |+.|+++.++++
T Consensus       248 ~~g-~~~G~~~~~~~~  262 (432)
T 3a9z_A          248 FYG-PRIGALYVRGVG  262 (432)
T ss_dssp             TTC-CSCEEEEETTBT
T ss_pred             hcC-CcceEEEEcccc
Confidence            986 557788776654

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.86  E-value=1.7e-21  Score=182.39  Aligned_cols=197  Identities=13%  Similarity=0.070  Sum_probs=149.6

Q ss_pred             eeeeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc----CC-------CcEEEcCChHHHHHHHHHH
Q psy5413          67 RTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA----GK-------EAAIFVPSGTMGNLIAIMT  135 (285)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~----g~-------~~~~~~~~Gs~a~~~al~~  135 (285)
                      .+++|..+.+..++|++++++.+...+...+.+.....++++.+++++    +.       +.+++++||++|+..++.+
T Consensus       104 ~~i~l~~g~~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~  183 (533)
T 3f6t_A          104 DAVNYCHTELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHS  183 (533)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHH
T ss_pred             hheeccCCCCCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHH
Confidence            467888888888888888887776655433335556678888888876    32       4568999999999999987


Q ss_pred             -----ccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC----CCCCCCHHHHHHHhcccccccCCceE
Q psy5413         136 -----HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ----KDGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       136 -----~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                           ++ ++||+|+++.++|.........         .|..++.++..    .++.+|+++|++++++       +++
T Consensus       184 l~~~~l~-~~gd~Viv~~p~~~~~~~~~~~---------~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~-------~~k  246 (533)
T 3f6t_A          184 LAENHLL-KKGDKIAINEPIFTPYLRIPEL---------KDYELVEVDLHSYEKNDWEIEPNEIEKLKDP-------SIK  246 (533)
T ss_dssp             HHHTTSS-CTTCEEEEESSCCHHHHTSGGG---------GGSEEEEECCCEETTTTSEECHHHHHHHSCT-------TEE
T ss_pred             hhhhhcc-CCcCEEEEcCCCcHHHHHHHHH---------cCCeEEEEEecCCcccCCCCCHHHHHHHhCC-------CCe
Confidence                 45 6899999999888665442222         36666666653    3467899999999977       899


Q ss_pred             EEEEecccCCCCeeeCCHHHHHHHHHHHH-HcCCeEEEeCccCCh-------hhhcccCCeEEEecccccCc--ceeEEe
Q psy5413         207 LVCVENTHNYCGGTVLPMQWLRELKARCQ-EHNIPVHMDGARLPL-------AEVCASVDTVMFCLSKGLGA--PVGSIL  276 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~-~~gi~li~Dea~~~~-------~~~~~~~dv~~~s~sK~l~~--p~gg~~  276 (285)
                      +|++++|+||+ |.+++.+++++|+++|+ +||+++|+||+|..+       .....+.++++.|+||.+|.  .+.|++
T Consensus       247 ~v~l~~p~NPt-G~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l  325 (533)
T 3f6t_A          247 ALIVVNPTNPT-SKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGWRLGVI  325 (533)
T ss_dssp             EEEEESSCTTT-CBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGGCEEEE
T ss_pred             EEEEeCCCCCC-ccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcccceEEE
Confidence            99999999999 89999999999999999 689999999998722       12222334669999999874  455677


Q ss_pred             ecCcc
Q psy5413         277 AGPEE  281 (285)
Q Consensus       277 ~~~~~  281 (285)
                      +.+++
T Consensus       326 ~~~~~  330 (533)
T 3f6t_A          326 ALNEK  330 (533)
T ss_dssp             EEESS
T ss_pred             EECcH
Confidence            76655

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.85  E-value=1.3e-21  Score=176.67  Aligned_cols=192  Identities=17%  Similarity=0.168  Sum_probs=148.6

Q ss_pred             CeeeeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHc-cccCCCeE
Q psy5413          66 IRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTH-CDRRDSEI  144 (285)
Q Consensus        66 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~-~~~~g~~v  144 (285)
                      +.++||..+.+..+ +++.+++.++... ..|...+...++++.+++++|.+..+++++|++|+..+++++ + ++|++|
T Consensus        30 ~~~id~~~~~~~~~-~~v~~a~~~~~~~-~~y~~~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~~-~~gd~v  106 (399)
T 2oga_A           30 VPFLDLKAAYEELR-AETDAAIARVLDS-GRYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGI-GPGDEV  106 (399)
T ss_dssp             BCSCCHHHHHHHTH-HHHHHHHHHHHHH-TCCSSSHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTTC-CTTCEE
T ss_pred             CcccccCcCCCCCC-HHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhCC-CCcCEE
Confidence            45678877665544 8899998876643 256666889999999999999988899999999999999998 5 589999


Q ss_pred             EecCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCC
Q psy5413         145 IVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLP  223 (285)
Q Consensus       145 i~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~  223 (285)
                      +++.+.|..+....         ...|.+++.++.++ ++.+|+++|++++++       ++++|++   +|++ |.+.+
T Consensus       107 l~~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-------~~~~v~~---~n~t-G~~~~  166 (399)
T 2oga_A          107 IVPSHTYIASWLAV---------SATGATPVPVEPHEDHPTLDPLLVEKAITP-------RTRALLP---VHLY-GHPAD  166 (399)
T ss_dssp             EEESSSCTHHHHHH---------HHTTCEEEEECBCSSSSSBCHHHHHHHCCT-------TEEEECC---BCGG-GCCCC
T ss_pred             EECCCccHHHHHHH---------HHCCCEEEEEecCCCCCCcCHHHHHHhcCC-------CCeEEEE---eCCc-CCccC
Confidence            99888776544322         23478888888755 467899999999987       7888885   4556 88888


Q ss_pred             HHHHHHHHHHHHHcCCeEEEeCccCCh-h-h---hcccCCeEEEec--ccccCcc-eeEEeecC-cccc
Q psy5413         224 MQWLRELKARCQEHNIPVHMDGARLPL-A-E---VCASVDTVMFCL--SKGLGAP-VGSILAGP-EEFI  283 (285)
Q Consensus       224 ~~~l~~i~~la~~~gi~li~Dea~~~~-~-~---~~~~~dv~~~s~--sK~l~~p-~gg~~~~~-~~~i  283 (285)
                         +++|.++|+++|+++|+||+|+.. . .   .....|++++|+  +|+++++ .||+++.+ ++++
T Consensus       167 ---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~  232 (399)
T 2oga_A          167 ---MDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELA  232 (399)
T ss_dssp             ---HHHHHHHHHHHTCEECEECTTCTTCEETTEETTCTTCEEEEECCTTSSSCCSSCCEEEEESCHHHH
T ss_pred             ---HHHHHHHHHHcCCEEEEECcccccCccCCeecccccCEEEEeCCCCccCCcCCceEEEEeCCHHHH
Confidence               999999999999999999999822 1 1   112258889998  6999873 67777664 6654

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.85  E-value=3.2e-21  Score=171.52  Aligned_cols=195  Identities=13%  Similarity=0.061  Sum_probs=143.7

Q ss_pred             cCCeeeeeccCCcCC-CcHHHHHHHHhcccC----CCCccCChhHHHHHHHHHhHcCC--CcEEEcCChHHHHHHHHHHc
Q psy5413          64 VNIRTVDIRSDTISK-PTMEMKNYMFNCEVG----DDVYLEDPTCKELQEKAAKLAGK--EAAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        64 ~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~----~~~y~~~~~~~~l~~~la~~~g~--~~~~~~~~Gs~a~~~al~~~  136 (285)
                      .++.+++|.++.+.. ++|++.+++.+....    ...|. ++...++++.+++++|.  +.+++++||++|+..+++++
T Consensus        24 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~-~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l  102 (360)
T 3hdo_A           24 DIASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYP-SASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAF  102 (360)
T ss_dssp             CCTTSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCC-CSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred             cccceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCC-CCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHH
Confidence            356789999765554 678999999887654    23444 34468999999999984  46799999999999999998


Q ss_pred             cccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCC
Q psy5413         137 CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNY  216 (285)
Q Consensus       137 ~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~  216 (285)
                      + ++||+|+++.++|.......         ...|.+++.++.++++.+  +++++.+         ++++|++++|+||
T Consensus       103 ~-~~gd~Vl~~~p~~~~~~~~~---------~~~g~~~~~v~~~~~~~~--~~l~~~~---------~~~~v~i~~p~np  161 (360)
T 3hdo_A          103 A-AEGEEIGYVHPSYSYYGTLA---------EVQGARVRTFGLTGDFRI--AGFPERY---------EGKVFFLTTPNAP  161 (360)
T ss_dssp             C-CTTCEEEEESSSCTHHHHHH---------HHHTCEEEEECBCTTSSB--TTCCSSB---------CSSEEEEESSCTT
T ss_pred             h-CCCCEEEEcCCChHHHHHHH---------HHCCCEEEEeeCCCCCCH--HHHHhhc---------CCCEEEEeCCCCC
Confidence            6 68999999888775543322         234888888887555433  3332221         3569999999999


Q ss_pred             CCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcc--cCCeEEEecccccCc--ceeEEeecCccccc
Q psy5413         217 CGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCA--SVDTVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       217 ~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~--~~dv~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      + |.++|   ++++.++|+++|+++|+||+|+.+     .....  ..++++.|+||+++.  .+.|+++.++++++
T Consensus       162 t-G~~~~---~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~  234 (360)
T 3hdo_A          162 L-GPSFP---LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIA  234 (360)
T ss_dssp             T-CCCCC---HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHHHHH
T ss_pred             C-CCCcC---HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHHHHH
Confidence            9 99999   788888899999999999998832     22212  223558999999863  56678888877654

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.85  E-value=5.8e-21  Score=171.66  Aligned_cols=199  Identities=16%  Similarity=0.054  Sum_probs=145.2

Q ss_pred             CeeeeeccCCc---C---CCcHHHHHHHHhccc--CCCCccCChhHHHHHHHHHhHc---C-----CCcEEE--cCChHH
Q psy5413          66 IRTVDIRSDTI---S---KPTMEMKNYMFNCEV--GDDVYLEDPTCKELQEKAAKLA---G-----KEAAIF--VPSGTM  127 (285)
Q Consensus        66 ~~~~~~~~~~~---~---~~~~~v~~a~~~~~~--~~~~y~~~~~~~~l~~~la~~~---g-----~~~~~~--~~~Gs~  127 (285)
                      +.+++|..+.+   .   .+++.+.+++.++..  ....|+..+...++++.+++++   +     .+.+++  ++||++
T Consensus        26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~  105 (396)
T 2q7w_A           26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTG  105 (396)
T ss_dssp             --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHH
T ss_pred             CCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchh
Confidence            46788888763   2   356899999887643  2345766667899999999997   2     345666  999999


Q ss_pred             HHHHHHHHcc-ccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCc
Q psy5413         128 GNLIAIMTHC-DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCAS  204 (285)
Q Consensus       128 a~~~al~~~~-~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~  204 (285)
                      |++.+++++. ..+|++|++..++|......   .      ...|.+++.++..  +++.+|++++++++++.    ..+
T Consensus       106 a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~---~------~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~----~~~  172 (396)
T 2q7w_A          106 ALRVAADFLAKNTSVKRVWVSNPSWPNHKSV---F------NSAGLEVREYAYYDAENHTLDFDALINSLNEA----QAG  172 (396)
T ss_dssp             HHHHHHHHHHHHSCCCEEEEEESCCTHHHHH---H------HHTTCEEEEEECEETTTTEECHHHHHHHHTTC----CTT
T ss_pred             hHHHHHHHHHHhCCCCEEEEcCCCchhHHHH---H------HHcCCceEEEecccCCCCCcCHHHHHHHHHhC----CCC
Confidence            9999998764 14899999887766543321   1      2347788888763  45668999999999752    225


Q ss_pred             eEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh--------hh---cc-cCC-eEEEecccccCc-
Q psy5413         205 TSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA--------EV---CA-SVD-TVMFCLSKGLGA-  270 (285)
Q Consensus       205 ~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~--------~~---~~-~~d-v~~~s~sK~l~~-  270 (285)
                      ++++++++|+||| |.+++.+++++|+++|++||+++|+||+|..+.        .+   .. .-+ +++.|+||+++. 
T Consensus       173 ~~~v~~~~p~npt-G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~  251 (396)
T 2q7w_A          173 DVVLFHGCCHNPT-GIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLY  251 (396)
T ss_dssp             CEEEEECSSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCG
T ss_pred             CEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccccc
Confidence            7889999999999 899999999999999999999999999987321        11   11 223 459999999973 


Q ss_pred             -ceeEEeec
Q psy5413         271 -PVGSILAG  278 (285)
Q Consensus       271 -p~gg~~~~  278 (285)
                       .+.|+++.
T Consensus       252 G~riG~~~~  260 (396)
T 2q7w_A          252 NERVGACTL  260 (396)
T ss_dssp             GGCCEEEEE
T ss_pred             ccccceEEE
Confidence             44455653

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.85  E-value=1.5e-21  Score=177.83  Aligned_cols=204  Identities=12%  Similarity=0.016  Sum_probs=151.9

Q ss_pred             CeeeeeccCCc-CC-CcHHH--HHHHHhcccC--CCCccCChhHHHHHHHHHhHc-----CC--Cc---EEEcCChHHHH
Q psy5413          66 IRTVDIRSDTI-SK-PTMEM--KNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA-----GK--EA---AIFVPSGTMGN  129 (285)
Q Consensus        66 ~~~~~~~~~~~-~~-~~~~v--~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~-----g~--~~---~~~~~~Gs~a~  129 (285)
                      +.++||..+.+ .. .+|.+  .+++.++...  ...|.......++++.+++++     +.  +.   +++++||++|+
T Consensus        47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al  126 (430)
T 2x5f_A           47 STTYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGL  126 (430)
T ss_dssp             TCSEECCCSSCEETTEECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHH
T ss_pred             CCcEEeeeeeccCCCCchhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHH
Confidence            35789998877 44 34556  7777665432  345665456889999999998     54  46   78999999999


Q ss_pred             HHHHHHccccCCCeEEecCCcceeeecccccccccccccc-cceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEE
Q psy5413         130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQI-GRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       130 ~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                      ..++++++ ++||+|+++.++|......   .      .. .|.+++.++.++ ++.+|+++|++++++    ++.++++
T Consensus       127 ~~~~~~l~-~~gd~Vl~~~p~y~~~~~~---~------~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~----~~~~~~~  192 (430)
T 2x5f_A          127 SLVGDLFV-NQDDTILLPEHNWGNYKLV---F------NTRNGANLQTYPIFDKDGHYTTDSLVEALQS----YNKDKVI  192 (430)
T ss_dssp             HHHHHHHC-CTTCEEEEESSCCTHHHHH---H------TTTTCCEEEEECCBCTTSCBCSHHHHHHHHH----CCSSEEE
T ss_pred             HHHHHHHh-CCCCEEEEcCCcCccHHHH---H------HHhcCCeEEEEeccCccCCcCHHHHHHHHHh----cCCCCEE
Confidence            99999987 6899999988776544331   1      23 478888888644 356899999999976    2336899


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHH-----cCCeEEEeCccCCh----------h-hhcc-cC----CeEEEeccc
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQE-----HNIPVHMDGARLPL----------A-EVCA-SV----DTVMFCLSK  266 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~-----~gi~li~Dea~~~~----------~-~~~~-~~----dv~~~s~sK  266 (285)
                      |++++|+||| |.+++.+++++|+++|++     ||+++|+||+|..+          . .+.. ..    ++++.|+||
T Consensus       193 v~i~~p~npt-G~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK  271 (430)
T 2x5f_A          193 MILNYPNNPT-GYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATK  271 (430)
T ss_dssp             EEECSSCTTT-CCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHH
T ss_pred             EEEcCCCCCC-CCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEeccc
Confidence            9999999999 899999999999999999     99999999998721          1 2211 22    344899999


Q ss_pred             ccCc--ceeEEeec---Cccccc
Q psy5413         267 GLGA--PVGSILAG---PEEFIQ  284 (285)
Q Consensus       267 ~l~~--p~gg~~~~---~~~~i~  284 (285)
                      ++++  .+.|+++.   ++++++
T Consensus       272 ~~~~~G~riG~~~~~~~~~~~~~  294 (430)
T 2x5f_A          272 EFFAWGFRVGFMTFGTSDQTTKE  294 (430)
T ss_dssp             HTTCGGGCCEEEEEBCCCHHHHH
T ss_pred             CCCCCCCCeEEEEEecCCHHHHH
Confidence            9974  44567766   766653

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.85  E-value=3.6e-21  Score=172.84  Aligned_cols=188  Identities=19%  Similarity=0.162  Sum_probs=146.4

Q ss_pred             eeeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHc-cccCCCeEEe
Q psy5413          68 TVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTH-CDRRDSEIIV  146 (285)
Q Consensus        68 ~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~-~~~~g~~vi~  146 (285)
                      +++|..  +. .++++.+++.+..... .|...+...++++.+++++|.+.+++++||++|+..+++++ + ++|++|++
T Consensus        10 ~i~~~~--p~-~~~~~~~a~~~~~~~~-~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~~-~~gd~Vl~   84 (393)
T 1mdo_A           10 FLPFSR--PA-MGAEELAAVKTVLDSG-WITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGI-GEGDEVIT   84 (393)
T ss_dssp             CBCSCC--CC-CCHHHHHHHHHHHHHT-CCSSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTC-CTTCEEEE
T ss_pred             ccccCC--CC-CCHHHHHHHHHHHhcC-CcCCChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcCC-CCCCEEEe
Confidence            355554  23 3477788887766432 34456889999999999999998999999999999999998 6 58999999


Q ss_pred             cCCcceeeecccccccccccccccceeeeeeecCCC-CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHH
Q psy5413         147 GDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD-GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQ  225 (285)
Q Consensus       147 ~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~  225 (285)
                      +.+.|.......         ...|.+++.++.+++ +.+|+++|++++++       ++++|+++++   + |.+.+  
T Consensus        85 ~~~~~~~~~~~~---------~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-------~~~~v~~~~~---~-G~~~~--  142 (393)
T 1mdo_A           85 PSMTWVSTLNMI---------VLLGANPVMVDVDRDTLMVTPEHIEAAITP-------QTKAIIPVHY---A-GAPAD--  142 (393)
T ss_dssp             ESSSCHHHHHHH---------HHTTCEEEEECBCTTTCCBCHHHHHHHCCT-------TEEEECCBCG---G-GCCCC--
T ss_pred             CCCccHhHHHHH---------HHCCCEEEEEeccCCcCCCCHHHHHHhcCC-------CceEEEEeCC---C-CCcCC--
Confidence            888876554322         234888888887554 57899999999987       7899998764   4 78888  


Q ss_pred             HHHHHHHHHHHcCCeEEEeCccC-Chhhh--ccc-CCeEEEecc--cccCcceeEEeecC-cccc
Q psy5413         226 WLRELKARCQEHNIPVHMDGARL-PLAEV--CAS-VDTVMFCLS--KGLGAPVGSILAGP-EEFI  283 (285)
Q Consensus       226 ~l~~i~~la~~~gi~li~Dea~~-~~~~~--~~~-~dv~~~s~s--K~l~~p~gg~~~~~-~~~i  283 (285)
                       +++|.++|++||+++|+||+|+ +....  ..+ .|+++.|+|  |+++++++|+++.+ ++++
T Consensus       143 -~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~  206 (393)
T 1mdo_A          143 -LDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFA  206 (393)
T ss_dssp             -HHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHH
T ss_pred             -HHHHHHHHHHcCCeEEEECccccCCeECCeecCCCCeEEEeCCCCCccccccceEEEeCCHHHH
Confidence             9999999999999999999998 32211  113 788999999  99988788888875 5654

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.85  E-value=2.2e-20  Score=170.05  Aligned_cols=157  Identities=18%  Similarity=0.177  Sum_probs=129.2

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .++...++++.+++++|.+..+++++|++|+..++++++ ++|++|+++...|..+.... .+.      ...|.+++.+
T Consensus        56 ~~~~~~~l~~~la~~~g~~~~v~~~sGt~A~~~~l~~~~-~~gd~vi~~~~~~~~~~~~~~~~~------~~~g~~~~~~  128 (421)
T 2ctz_A           56 MNPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLA-QAGDNIVSTPNLYGGTFNQFKVTL------KRLGIEVRFT  128 (421)
T ss_dssp             BCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEECSCCCHHHHHHHHTHH------HHTTCEEEEC
T ss_pred             CChHHHHHHHHHHHHhCCCceEEecCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHH------HHcCCEEEEE
Confidence            467789999999999999888999999999999999876 68999999887775543211 111      2457788877


Q ss_pred             -ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCcc-C-Ch--hh
Q psy5413         178 -TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGAR-L-PL--AE  252 (285)
Q Consensus       178 -~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~-~-~~--~~  252 (285)
                       +..     |+++++++|++       ++++|++++++|++ |.+.|   +++|+++|++||+++|+|++| + +.  ..
T Consensus       129 ~~~~-----d~~~l~~~i~~-------~~~~v~~~~~~n~~-G~~~~---l~~i~~~a~~~g~~livD~~~~~~g~~~~~  192 (421)
T 2ctz_A          129 SREE-----RPEEFLALTDE-------KTRAWWVESIGNPA-LNIPD---LEALAQAAREKGVALIVDNTFGMGGYLLRP  192 (421)
T ss_dssp             CTTC-----CHHHHHHHCCT-------TEEEEEEESSCTTT-CCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSCCG
T ss_pred             CCCC-----CHHHHHHhhcc-------CCeEEEEECCCCCC-CcccC---HHHHHHHHHHcCCEEEEECCcccccccCCc
Confidence             552     89999999987       89999999999999 89999   999999999999999999999 5 21  22


Q ss_pred             hcccCCeEEEecccccCc---ceeEEeec
Q psy5413         253 VCASVDTVMFCLSKGLGA---PVGSILAG  278 (285)
Q Consensus       253 ~~~~~dv~~~s~sK~l~~---p~gg~~~~  278 (285)
                      ...++|+++.|++|++++   +.||+++.
T Consensus       193 ~~~~~Di~~~s~~K~l~~~g~~~G~~~~~  221 (421)
T 2ctz_A          193 LAWGAALVTHSLTKWVGGHGAVIAGAIVD  221 (421)
T ss_dssp             GGGTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred             cccCCeEEEECCcccccCCCCcEEEEEEe
Confidence            335689999999999997   56888876

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.85  E-value=4.9e-21  Score=170.31  Aligned_cols=191  Identities=19%  Similarity=0.156  Sum_probs=143.2

Q ss_pred             eeeeeccCCcCC-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCC-C
Q psy5413          67 RTVDIRSDTISK-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRD-S  142 (285)
Q Consensus        67 ~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g-~  142 (285)
                      .++||.++.... ++|.+  +    ......|... ...++++.++++++.+  .+++++||++++..++++++ ++| +
T Consensus        30 ~~i~l~~~~~~~~~~~~v--a----~~~~~~Y~~~-~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~-~~g~d  101 (356)
T 1fg7_A           30 GDVWLNANEYPTAVEFQL--T----QQTLNRYPEC-QPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC-EPGKD  101 (356)
T ss_dssp             CSEECSSCCCSSCCCCCC--C----CCCTTSCCCS-SCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC-CTTTC
T ss_pred             ceEEeeCCCCCCCCCHhH--h----hhhhccCCCc-cHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHh-CCCCC
Confidence            568888654443 44455  2    2233456543 4789999999999865  57899999999999999987 588 8


Q ss_pred             eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413         143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL  222 (285)
Q Consensus       143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~  222 (285)
                      +|+++.++|.......         ...|.+++.++.++++.+|+++++++++        ++++|++++|+||| |.++
T Consensus       102 ~Vl~~~p~~~~~~~~~---------~~~g~~~~~v~~~~~~~~d~~~l~~~i~--------~~~~v~l~~p~npt-G~~~  163 (356)
T 1fg7_A          102 AILYCPPTYGMYSVSA---------ETIGVECRTVPTLDNWQLDLQGISDKLD--------GVKVVYVCSPNNPT-GQLI  163 (356)
T ss_dssp             EEEECSSSCTHHHHHH---------HHHTCEEEECCCCTTSCCCHHHHHTSCT--------TEEEEEEESSCTTT-CCCC
T ss_pred             EEEEeCCChHHHHHHH---------HHcCCEEEEeeCCCCCCCCHHHHHHHhc--------CCCEEEEeCCCCCC-CCCC
Confidence            9999887765443321         2347888888876666789999988874        47899999999999 8999


Q ss_pred             CHHHHHHHHHHHHHcCCeEEEeCccCChh------hhcc--cCCeEEEecccccCc--ceeEEeecCccccc
Q psy5413         223 PMQWLRELKARCQEHNIPVHMDGARLPLA------EVCA--SVDTVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       223 ~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~~--~~dv~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      |.+++++|+++|+ +|+++|+||+|..+.      .+..  ..++++.|+||+++.  .+.|+++.++++++
T Consensus       164 ~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~  234 (356)
T 1fg7_A          164 NPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVIN  234 (356)
T ss_dssp             CHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHH
T ss_pred             CHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHHHH
Confidence            9999999999999 999999999988322      1111  234569999999874  55677777777654

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.85  E-value=2.5e-21  Score=172.98  Aligned_cols=177  Identities=15%  Similarity=0.086  Sum_probs=139.0

Q ss_pred             cHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccc
Q psy5413          80 TMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGG  159 (285)
Q Consensus        80 ~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~  159 (285)
                      .+++.+++.+.... ..|...+...++++.+++++|.+.+++++||++|+..+++++..++||+|+++.+.|..+.... 
T Consensus        16 ~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~-   93 (373)
T 3frk_A           16 EYEIKFKFEEIYKR-NWFILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALAV-   93 (373)
T ss_dssp             HHHHHHHHHHHHHH-TCCSSSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHH-
T ss_pred             CHHHHHHHHHHHHC-CCccCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHH-
Confidence            56777777665543 2466678899999999999999999999999999999999982368999999988887654422 


Q ss_pred             cccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC
Q psy5413         160 ASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN  238 (285)
Q Consensus       160 ~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g  238 (285)
                              ...|.+++.++.+ +++.+|++++++++++       ++++|++   +|++ |.+.+   +++|.++|++||
T Consensus        94 --------~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~-------~~~~v~~---~n~~-G~~~~---l~~i~~l~~~~~  151 (373)
T 3frk_A           94 --------SYTGAKPIFVEPDIRTYNIDPSLIESAITE-------KTKAIIA---VHLY-GQPAD---MDEIKRIAKKYN  151 (373)
T ss_dssp             --------HHHSCEEEEECEETTTTEECGGGTGGGCCT-------TEEEEEE---ECCT-TCCCC---HHHHHHHHHHHT
T ss_pred             --------HHcCCEEEEEeccccccCcCHHHHHHhcCC-------CCeEEEE---ECCC-cCccc---HHHHHHHHHHcC
Confidence                    2347788888765 4567899999999987       7888884   4566 88888   999999999999


Q ss_pred             CeEEEeCccCC-hh----hhcccCCeEEEecc--cccCc-ceeEEeecCc
Q psy5413         239 IPVHMDGARLP-LA----EVCASVDTVMFCLS--KGLGA-PVGSILAGPE  280 (285)
Q Consensus       239 i~li~Dea~~~-~~----~~~~~~dv~~~s~s--K~l~~-p~gg~~~~~~  280 (285)
                      +++|+|++|+. ..    ......|++++|++  |++++ +.||++++++
T Consensus       152 ~~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~  201 (373)
T 3frk_A          152 LKLIEDAAQAHGSLYKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTND  201 (373)
T ss_dssp             CEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESC
T ss_pred             CEEEEECCcccCCEECCEeccccccEEEEeCcCCCccCccceeEEEEeCC
Confidence            99999999882 21    11123688888866  99998 6788887754

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.85  E-value=1.3e-20  Score=168.15  Aligned_cols=195  Identities=13%  Similarity=0.045  Sum_probs=144.3

Q ss_pred             eeeccCCcC-CCcHHHHHHHHhcccC----CCCccCChhHHHHHHHHHhH------cCC--CcEEEcCChHHHHHHHHHH
Q psy5413          69 VDIRSDTIS-KPTMEMKNYMFNCEVG----DDVYLEDPTCKELQEKAAKL------AGK--EAAIFVPSGTMGNLIAIMT  135 (285)
Q Consensus        69 ~~~~~~~~~-~~~~~v~~a~~~~~~~----~~~y~~~~~~~~l~~~la~~------~g~--~~~~~~~~Gs~a~~~al~~  135 (285)
                      +||.++.+. .++|++.+++.++...    ...|.... ..++++.++++      ++.  +.+++++||++++..++++
T Consensus        33 idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~-~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~  111 (369)
T 3cq5_A           33 IRLNTNENPYPPSEALVADLVATVDKIATELNRYPERD-AVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQA  111 (369)
T ss_dssp             EECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCCTT-CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHH
T ss_pred             eeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCCcc-HHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHH
Confidence            788876554 4678999998876542    34565433 36899999998      443  3468889899999999999


Q ss_pred             ccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccC
Q psy5413         136 HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHN  215 (285)
Q Consensus       136 ~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n  215 (285)
                      ++ ++|++|+++.++|.......         ...|.+++.++.++++.+|++++++++++.      ++++|++++|+|
T Consensus       112 l~-~~gd~Vl~~~~~y~~~~~~~---------~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~~~~v~~~~~~n  175 (369)
T 3cq5_A          112 FG-GPGRTALGFQPSYSMHPILA---------KGTHTEFIAVSRGADFRIDMDVALEEIRAK------QPDIVFVTTPNN  175 (369)
T ss_dssp             HC-STTCEEEEEESSCTHHHHHH---------HHTTCEEEEEECCTTSSCCHHHHHHHHHHH------CCSEEEEESSCT
T ss_pred             hc-CCCCEEEEcCCChHHHHHHH---------HHcCCEEEEecCCcCCCCCHHHHHHHhhcc------CCCEEEEeCCCC
Confidence            86 58999999887775443311         234788888887666678999999999752      578999999999


Q ss_pred             CCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh------hhhccc---CCeEEEecccccCc--ceeEEeecCccccc
Q psy5413         216 YCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL------AEVCAS---VDTVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       216 ~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~------~~~~~~---~dv~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      |+ |.++|   ++++.++|+.+++++|+||+|+.+      ......   .++++.|+||+++.  .+.|+++.++++++
T Consensus       176 pt-G~~~~---~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~  251 (369)
T 3cq5_A          176 PT-GDVTS---LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFID  251 (369)
T ss_dssp             TT-CCCCC---HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHH
T ss_pred             CC-CCCCC---HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHHH
Confidence            99 89999   677777777788999999998722      122122   23669999999974  44577777776653

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.85  E-value=2.3e-20  Score=169.69  Aligned_cols=206  Identities=14%  Similarity=0.086  Sum_probs=138.8

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCCCCcc-CChhHHHHHHHHHhHc-CCCcEEEcCChHHHHHHHHHHc--
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGDDVYL-EDPTCKELQEKAAKLA-GKEAAIFVPSGTMGNLIAIMTH--  136 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~~y~-~~~~~~~l~~~la~~~-g~~~~~~~~~Gs~a~~~al~~~--  136 (285)
                      |++++||.++    ..++++|++.+++.+++.....|+ ..+...++++.+++++ +.+.+++++||++|++.+++++  
T Consensus        51 g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~  130 (424)
T 2e7u_A           51 GNRYLDYVMSWGPLILGHAHPKVLARVRETLERGLTFGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARG  130 (424)
T ss_dssp             CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCCSSCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCEEEEccccccccccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHH
Confidence            5678888765    335578999999988776422222 4567899999999999 6777899999999999999973  


Q ss_pred             cccCCCeEEe-cCCcceeeecccccccc--cccc--cccce------eeeeeecCCCCCCCHHHHHHHhcccccccCCce
Q psy5413         137 CDRRDSEIIV-GDCSHIMLWEQGGASQT--SVYS--QIGRV------LMRGVTNQKDGTFDLDEMEAKFSTADNIHCAST  205 (285)
Q Consensus       137 ~~~~g~~vi~-~~~~h~~~~~~~~~~~~--~~~~--~~~g~------~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~  205 (285)
                      +. .++.|++ ...||..+.........  ..+.  ...|.      .++.++.     .|+++|++++++.    ++++
T Consensus       131 ~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~----~~~~  200 (424)
T 2e7u_A          131 YT-GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-----NDPEGLREVLKRR----GEEI  200 (424)
T ss_dssp             HH-CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-----TCHHHHHHHHHHH----GGGE
T ss_pred             hh-CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-----CCHHHHHHHHHhC----CCCE
Confidence            32 3355555 45667654322111100  0000  01121      2333332     3899999999741    1278


Q ss_pred             EEEEEecccCCCCeee-CCHHHHHHHHHHHHHcCCeEEEeCccCChh----hhcc----cCCeEEEecccccCc-ceeEE
Q psy5413         206 SLVCVENTHNYCGGTV-LPMQWLRELKARCQEHNIPVHMDGARLPLA----EVCA----SVDTVMFCLSKGLGA-PVGSI  275 (285)
Q Consensus       206 ~~v~i~~~~n~~gG~~-~~~~~l~~i~~la~~~gi~li~Dea~~~~~----~~~~----~~dv~~~s~sK~l~~-p~gg~  275 (285)
                      ++|++++.++++ |.+ .+.+++++|+++ ++||++||+||+|+++.    ...+    ..|  +.|+||++++ ..+|+
T Consensus       201 ~~vi~ep~~~~~-G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~d--i~s~sK~l~~G~~~G~  276 (424)
T 2e7u_A          201 AAIIFEPVVGNA-GVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAFGGATELLGLKPD--LVTLGKILGGGLPAAA  276 (424)
T ss_dssp             EEEEECSSBCTT-SCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSSTTHHHHHHTCCCS--EEEECGGGGTTSSCEE
T ss_pred             EEEEEeCCCCCC-CCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccchhHHHHHhCCCcc--hhhhhhhhhCCcceEE
Confidence            999998887777 655 579999999999 99999999999998542    1111    234  4588999987 34556


Q ss_pred             eecCccccc
Q psy5413         276 LAGPEEFIQ  284 (285)
Q Consensus       276 ~~~~~~~i~  284 (285)
                      +++++++++
T Consensus       277 ~~~~~~~~~  285 (424)
T 2e7u_A          277 YAGRREIME  285 (424)
T ss_dssp             EEECHHHHT
T ss_pred             EEEcHHHHh
Confidence            666777665

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.85  E-value=7.7e-21  Score=171.93  Aligned_cols=203  Identities=14%  Similarity=0.026  Sum_probs=148.4

Q ss_pred             CCeeeeeccCCc------CCCcHHHHHHHHhcc--c-CCCCccCChhHHHHHHHHHhHc-CC-------CcEEE--cCCh
Q psy5413          65 NIRTVDIRSDTI------SKPTMEMKNYMFNCE--V-GDDVYLEDPTCKELQEKAAKLA-GK-------EAAIF--VPSG  125 (285)
Q Consensus        65 ~~~~~~~~~~~~------~~~~~~v~~a~~~~~--~-~~~~y~~~~~~~~l~~~la~~~-g~-------~~~~~--~~~G  125 (285)
                      ++.+++|..+.+      ..+.+.+.+++.+..  . ....|+......++++.+++++ +.       +.+++  ++||
T Consensus        29 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg  108 (412)
T 1ajs_A           29 DPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGG  108 (412)
T ss_dssp             CTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred             CCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCc
Confidence            456788888764      235689999988775  2 2345766667889999999998 43       56788  9999


Q ss_pred             HHHHHHHHHHcc-ccCC-----CeEEecCCcceeeeccccccccccccccccee-eeeeecC--CCCCCCHHHHHHHhcc
Q psy5413         126 TMGNLIAIMTHC-DRRD-----SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVL-MRGVTNQ--KDGTFDLDEMEAKFST  196 (285)
Q Consensus       126 s~a~~~al~~~~-~~~g-----~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~--~~~~~d~~~l~~~i~~  196 (285)
                      ++|++.+++++. ..+|     ++|++..++|......   .      ...|.+ ++.++..  +++.+|++++++++++
T Consensus       109 ~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~---~------~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~  179 (412)
T 1ajs_A          109 TGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGV---F------TTAGFKDIRSYRYWDTEKRGLDLQGFLSDLEN  179 (412)
T ss_dssp             HHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHH---H------HHTTCSCEEEEECEETTTTEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHH---H------HHcCCceeEEEeeecCCCCccCHHHHHHHHHh
Confidence            999999975322 2478     8899887776543321   1      234777 7777762  4566899999999975


Q ss_pred             cccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---------hh---cccCC--eEEE
Q psy5413         197 ADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---------EV---CASVD--TVMF  262 (285)
Q Consensus       197 ~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~---~~~~d--v~~~  262 (285)
                          +..++++|++++|+||| |.+++.+++++|+++|++||+++|+||+|.++.         .+   ....|  +++.
T Consensus       180 ----~~~~~~~v~~~~p~npt-G~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  254 (412)
T 1ajs_A          180 ----APEFSIFVLHACAHNPT-GTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQ  254 (412)
T ss_dssp             ----SCTTCEEEEESSSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEE
T ss_pred             ----CCCCcEEEEECCCCCCC-CCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEE
Confidence                22367888899999999 889999999999999999999999999977321         11   12234  5599


Q ss_pred             ecccccCc--ceeEEeec---Ccc
Q psy5413         263 CLSKGLGA--PVGSILAG---PEE  281 (285)
Q Consensus       263 s~sK~l~~--p~gg~~~~---~~~  281 (285)
                      |+||.+++  .+.|+++.   +++
T Consensus       255 s~sK~~~~~G~riG~~~~~~~~~~  278 (412)
T 1ajs_A          255 SFSKNFGLYNERVGNLTVVAKEPD  278 (412)
T ss_dssp             ECTTTSCCGGGCEEEEEEECSSHH
T ss_pred             ecccccCCCCcceEEEEEecCCHH
Confidence            99999876  33456655   565

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.85  E-value=2.9e-21  Score=175.90  Aligned_cols=217  Identities=14%  Similarity=0.068  Sum_probs=137.2

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCCC----CccCChhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGDD----VYLEDPTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~----~y~~~~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~  134 (285)
                      |++++||.++    ..++.+|++.+++.+++....    ....++...++++.++++++  .+.+++++||++|++.+++
T Consensus        28 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~  107 (430)
T 3i4j_A           28 GRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVK  107 (430)
T ss_dssp             SCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHH
T ss_pred             CCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHH
Confidence            5677888763    334568999999987764321    23346678899999999985  4678999999999999999


Q ss_pred             Hcccc------C-CCeEEec-CCcceeeeccccccccccccccc---ce--eeeeeecCCC---CCCCHHHHHHHhcccc
Q psy5413         135 THCDR------R-DSEIIVG-DCSHIMLWEQGGASQTSVYSQIG---RV--LMRGVTNQKD---GTFDLDEMEAKFSTAD  198 (285)
Q Consensus       135 ~~~~~------~-g~~vi~~-~~~h~~~~~~~~~~~~~~~~~~~---g~--~~~~~~~~~~---~~~d~~~l~~~i~~~~  198 (285)
                      +++..      + ++.|++. ..+|.+............+...+   ..  .+..++.+..   +..|+++|+++|++. 
T Consensus       108 ~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~-  186 (430)
T 3i4j_A          108 LARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLERE-  186 (430)
T ss_dssp             HHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHH-
T ss_pred             HHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhc-
Confidence            98642      2 4566664 55566553322222011111111   11  2333343222   224678999998741 


Q ss_pred             cccCCceEEEEEecccC-CCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccC-CeE--EEecccccC
Q psy5413         199 NIHCASTSLVCVENTHN-YCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASV-DTV--MFCLSKGLG  269 (285)
Q Consensus       199 ~~~~~~~~~v~i~~~~n-~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~-dv~--~~s~sK~l~  269 (285)
                        +.+++++|++++++| ++|..+.+.+++++|+++|++||++||+||+|+++.     ...... ++.  +.++||+++
T Consensus       187 --~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t~sK~l~  264 (430)
T 3i4j_A          187 --GPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLA  264 (430)
T ss_dssp             --CGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEEECGGGT
T ss_pred             --CCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEEEEccccc
Confidence              112789999999998 886678889999999999999999999999988432     122222 222  567889988


Q ss_pred             c--ceeEEeecCccccc
Q psy5413         270 A--PVGSILAGPEEFIQ  284 (285)
Q Consensus       270 ~--p~gg~~~~~~~~i~  284 (285)
                      +  .+.|+++.++++++
T Consensus       265 ~G~~r~G~~~~~~~i~~  281 (430)
T 3i4j_A          265 AGYAPLAGLLAAPQVYE  281 (430)
T ss_dssp             TTSSCCEEEEECHHHHH
T ss_pred             CCccccEEEEECHHHHH
Confidence            5  23366777777653

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.85  E-value=1.1e-20  Score=171.92  Aligned_cols=188  Identities=16%  Similarity=0.138  Sum_probs=145.8

Q ss_pred             eeccCCcCCC-cHHHHHHHHhcccCCCCccC-ChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEec
Q psy5413          70 DIRSDTISKP-TMEMKNYMFNCEVGDDVYLE-DPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVG  147 (285)
Q Consensus        70 ~~~~~~~~~~-~~~v~~a~~~~~~~~~~y~~-~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~  147 (285)
                      +|..+.+..+ ++++.+++.+.... ..|.. .+...++++.++++++.+.+++++||++|+..+++++.  +|++|+++
T Consensus        20 ~l~~~~p~~~~p~~~~~a~~~~~~~-~~y~~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~--~gd~Vlv~   96 (424)
T 2po3_A           20 PLLVGRPNRIDRARLYERLDRALDS-QWLSNGGPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG--LTGEVIMP   96 (424)
T ss_dssp             CEETTCCCCCCHHHHHHHHHHHHHH-TCCSSSCHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT--CCSEEEEE
T ss_pred             cccccCCCCCChHHHHHHHHHHHhc-CCcccCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC--CCCEEEEC
Confidence            3444444443 45888888776542 24665 68899999999999999999999999999999999864  68999998


Q ss_pred             CCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHH
Q psy5413         148 DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW  226 (285)
Q Consensus       148 ~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~  226 (285)
                      +++|.......         ...|.+++.++.++ ++.+|+++|++++++       ++++|+++++   + |.+.+   
T Consensus        97 ~~~~~~~~~~~---------~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-------~~~~v~~~~~---t-G~~~~---  153 (424)
T 2po3_A           97 SMTFAATPHAL---------RWIGLTPVFADIDPDTGNLDPDQVAAAVTP-------RTSAVVGVHL---W-GRPCA---  153 (424)
T ss_dssp             SSSCTHHHHHH---------HHTTCEEEEECBCTTTSSBCHHHHGGGCCT-------TEEEEEEECG---G-GCCCC---
T ss_pred             CCccHHHHHHH---------HHcCCEEEEEecCCCcCCcCHHHHHHhhCc-------CCcEEEEECC---C-CCcCC---
Confidence            88876554322         23488888888754 567899999999976       7899998764   4 78777   


Q ss_pred             HHHHHHHHHHcCCeEEEeCccC-Chhh----hcccCCeEEEecc--cccCcceeEEeecC-cccc
Q psy5413         227 LRELKARCQEHNIPVHMDGARL-PLAE----VCASVDTVMFCLS--KGLGAPVGSILAGP-EEFI  283 (285)
Q Consensus       227 l~~i~~la~~~gi~li~Dea~~-~~~~----~~~~~dv~~~s~s--K~l~~p~gg~~~~~-~~~i  283 (285)
                      +++|+++|++||+++|+||+|+ +...    +....|+++.|+|  |+++++++|+++.+ ++++
T Consensus       154 l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~sk~K~l~~~~~G~~v~~~~~l~  218 (424)
T 2po3_A          154 ADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFHATKAVNAFEGGAVVTDDADLA  218 (424)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHH
T ss_pred             HHHHHHHHHHcCCEEEEECccccCCeECCeecccccCEEEEeCCCCCCccCCCCeEEEeCCHHHH
Confidence            9999999999999999999988 3321    2223588899998  89988888888887 6654

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.85  E-value=4.1e-21  Score=174.51  Aligned_cols=196  Identities=13%  Similarity=-0.003  Sum_probs=146.2

Q ss_pred             CeeeeeccC---CcCC---CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcCC--------C--cEEEcCChHH
Q psy5413          66 IRTVDIRSD---TISK---PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAGK--------E--AAIFVPSGTM  127 (285)
Q Consensus        66 ~~~~~~~~~---~~~~---~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~--------~--~~~~~~~Gs~  127 (285)
                      ..+++|..+   ++..   +.+.+.+++.+....  ...|.......++++.+++++..        +  .+++++||++
T Consensus        49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~  128 (420)
T 4f4e_A           49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG  128 (420)
T ss_dssp             SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred             CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence            467888887   3333   347999998876654  34576666778899999988632        3  5689999999


Q ss_pred             HHHHHHH--HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeec--CCCCCCCHHHHHHHhcccccccCC
Q psy5413         128 GNLIAIM--THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN--QKDGTFDLDEMEAKFSTADNIHCA  203 (285)
Q Consensus       128 a~~~al~--~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~i~~~~~~~~~  203 (285)
                      |+..+++  .++ .+||+|++++++|.......         ...|.+++.++.  .+++.+|++++++.+++    +.+
T Consensus       129 al~~~~~~~~~~-~~gd~Vlv~~p~~~~~~~~~---------~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----~~~  194 (420)
T 4f4e_A          129 ALKIGADFLRTL-NPKAKVAISDPSWENHRALF---------DMAGFEVVAYPYYDAKTNGVNFDGMLAALNG----YEP  194 (420)
T ss_dssp             HHHHHHHHHHHH-CTTCCEEEEESCCHHHHHHH---------HHTTCCEEEEECEETTTTEECHHHHHHHHTT----CCT
T ss_pred             HHHHHHHHHHHh-CCCCEEEEeCCCcHhHHHHH---------HHcCCeEEEeeeeccccCccCHHHHHHHHHh----CCC
Confidence            9999964  334 58999999888875543322         234778888876  34667899999999985    223


Q ss_pred             ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh--------h---hc--ccCCeEEEecccccCc
Q psy5413         204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA--------E---VC--ASVDTVMFCLSKGLGA  270 (285)
Q Consensus       204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~--------~---~~--~~~dv~~~s~sK~l~~  270 (285)
                      ++++|++++|+||| |.+++.+++++|+++|++||+++|+||+|..+.        .   ..  ....+++.|+||.++.
T Consensus       195 ~~~~v~i~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~  273 (420)
T 4f4e_A          195 GTIVVLHACCHNPT-GVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSL  273 (420)
T ss_dssp             TCEEEEECSSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTC
T ss_pred             CCEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcC
Confidence            78999999999999 899999999999999999999999999987221        1   11  1223558999999984


Q ss_pred             --ceeEEe
Q psy5413         271 --PVGSIL  276 (285)
Q Consensus       271 --p~gg~~  276 (285)
                        .+.|++
T Consensus       274 ~G~RiG~~  281 (420)
T 4f4e_A          274 YGERVGAL  281 (420)
T ss_dssp             GGGCEEEE
T ss_pred             cCCCcEEE
Confidence              444554

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.85  E-value=1.9e-20  Score=169.28  Aligned_cols=188  Identities=18%  Similarity=0.106  Sum_probs=131.8

Q ss_pred             CcHHHHHHHHhcccCC--------CCccCChhHHHH----HHHHHhHcCCCcE-EEcCChHHHHHHHHHHccccCCCeEE
Q psy5413          79 PTMEMKNYMFNCEVGD--------DVYLEDPTCKEL----QEKAAKLAGKEAA-IFVPSGTMGNLIAIMTHCDRRDSEII  145 (285)
Q Consensus        79 ~~~~v~~a~~~~~~~~--------~~y~~~~~~~~l----~~~la~~~g~~~~-~~~~~Gs~a~~~al~~~~~~~g~~vi  145 (285)
                      .+|++.+++.++....        ..|...+...++    ++.+++++|.+.. +++++|++|++.++++++ ++||+|+
T Consensus        37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~-~~gd~vl  115 (417)
T 3n0l_A           37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYAALI-NPGDKIL  115 (417)
T ss_dssp             CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHS-CTTCEEE
T ss_pred             CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEeccHHHHHHHHHHHhc-CCCCEEE
Confidence            4899999998876321        122233334444    4488888998876 888999999999999986 6999999


Q ss_pred             ecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHH
Q psy5413         146 VGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQ  225 (285)
Q Consensus       146 ~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~  225 (285)
                      +..+.|......+...   .. ...+..++.++.+.++.+|+++|++++++.      ++++|++++++|   |.+.+  
T Consensus       116 ~~~~~~~~~~~~~~~~---~~-~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~~v~~~~~~~---G~~~~--  180 (417)
T 3n0l_A          116 GMDLSHGGHLTHGAKV---SS-SGKMYESCFYGVELDGRIDYEKVREIAKKE------KPKLIVCGASAY---ARVID--  180 (417)
T ss_dssp             EECC--------------------CCSEEEEECCCTTSSCCHHHHHHHHHHH------CCSEEEECCSSC---CSCCC--
T ss_pred             ecccccccccchhhhh---hh-hcceeeeEeccCCCCCCcCHHHHHHHHHhc------CCeEEEECCccc---CccCC--
Confidence            9888775432211111   00 112334555555566779999999999842      688999887775   78899  


Q ss_pred             HHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecC-cccc
Q psy5413         226 WLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGP-EEFI  283 (285)
Q Consensus       226 ~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~-~~~i  283 (285)
                       +++|+++|++||+++|+||+|. +..      ......|+++.|+||+|+|++||+++++ ++++
T Consensus       181 -l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~G~~~~~~~~~~  245 (417)
T 3n0l_A          181 -FAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRGGIIMTNDEELA  245 (417)
T ss_dssp             -HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTTTCSEEEEESSTTTCSCSCEEEEESCHHHH
T ss_pred             -HHHHHHHHHHcCCEEEEECccchhhhhcccCCCccccceEEEeeCccccCCCCeeEEEECCHHHH
Confidence             9999999999999999999975 221      1123568999999999988889999887 5554

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.85  E-value=1.8e-20  Score=171.98  Aligned_cols=207  Identities=16%  Similarity=0.124  Sum_probs=131.9

Q ss_pred             CCeeeeeccCC----cCCCcHHHHHHHHhcccCCCCcc-CChhHHHHHHHHHhHc-CCCcEEEcCChHHHHHHHHHHccc
Q psy5413          65 NIRTVDIRSDT----ISKPTMEMKNYMFNCEVGDDVYL-EDPTCKELQEKAAKLA-GKEAAIFVPSGTMGNLIAIMTHCD  138 (285)
Q Consensus        65 ~~~~~~~~~~~----~~~~~~~v~~a~~~~~~~~~~y~-~~~~~~~l~~~la~~~-g~~~~~~~~~Gs~a~~~al~~~~~  138 (285)
                      |+.++||.++.    .++++|++.+++.+++.....|+ ..+...++++.+++.+ +.+.+++++||++|++.+++++..
T Consensus        56 g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~  135 (453)
T 2cy8_A           56 GNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQYAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARA  135 (453)
T ss_dssp             CCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTCSSCSSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHH
Confidence            56788997663    34588999999998775422222 4556777777777776 567789999999999999998321


Q ss_pred             -cCCCeEEe-cCCcceeeeccccccccccc--ccccce------eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEE
Q psy5413         139 -RRDSEIIV-GDCSHIMLWEQGGASQTSVY--SQIGRV------LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLV  208 (285)
Q Consensus       139 -~~g~~vi~-~~~~h~~~~~~~~~~~~~~~--~~~~g~------~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v  208 (285)
                       ..+++||+ ...||+.+....... ...|  ....|.      .++.++.     .|+++|+++|+++    ++++++|
T Consensus       136 ~~~~~~vi~~~~~yhg~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~----~~~~~~v  205 (453)
T 2cy8_A          136 FTGRRMILRFEGHYHGWHDFSASGY-NSHFDGQPAPGVLPETTANTLLIRP-----DDIEGMREVFANH----GSDIAAF  205 (453)
T ss_dssp             HHCCCEEEEECC-----------------------------CGGGEEEECT-----TCHHHHHHHHHHH----GGGEEEE
T ss_pred             hhCCCEEEEEcCCcCCCchhhHhhc-CCccCCCcCCCCCccccCceeecCC-----CCHHHHHHHHHhc----CCCEEEE
Confidence             12345555 445675543221111 0000  000122      2233332     3899999999741    2378999


Q ss_pred             EEecccCCCCe-eeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----hhcc----cCCeEEEecccccCc-ceeEEeec
Q psy5413         209 CVENTHNYCGG-TVLPMQWLRELKARCQEHNIPVHMDGARLPLA----EVCA----SVDTVMFCLSKGLGA-PVGSILAG  278 (285)
Q Consensus       209 ~i~~~~n~~gG-~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----~~~~----~~dv~~~s~sK~l~~-p~gg~~~~  278 (285)
                      ++++++|++ | .+.+.+++++|+++|++||++||+||+|+++.    ...+    ..|  +.++||++++ ..+|++++
T Consensus       206 i~ep~~~~t-G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~d--i~s~sK~l~~G~~~G~v~~  282 (453)
T 2cy8_A          206 IAEPVGSHF-GVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHGMQALLDVQPD--LTCLAKASAGGLPGGILGG  282 (453)
T ss_dssp             EECSSEHHH-HTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTCTTHHHHHHTCCCS--EEEEEGGGGTTSSCEEEEE
T ss_pred             EECCCCCCC-CCcCCCHHHHHHHHHHHHHcCCEEEEecCccccccCchhhhHHhCCCCc--EEEEChhhhCCcceEEEec
Confidence            999988887 6 45679999999999999999999999998541    1111    235  4488899986 45667777


Q ss_pred             Cccccc
Q psy5413         279 PEEFIQ  284 (285)
Q Consensus       279 ~~~~i~  284 (285)
                      ++++++
T Consensus       283 ~~~~~~  288 (453)
T 2cy8_A          283 REDVMG  288 (453)
T ss_dssp             CHHHHT
T ss_pred             hHHHHH
Confidence            777665

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.85  E-value=2.2e-20  Score=171.21  Aligned_cols=189  Identities=13%  Similarity=0.053  Sum_probs=136.3

Q ss_pred             CCcHHHHHHHHhcccCCC--C------ccCChhH---HHHH-HHHHhHcCCCcEEE-cCChHHHHHHHHHHccccCCCeE
Q psy5413          78 KPTMEMKNYMFNCEVGDD--V------YLEDPTC---KELQ-EKAAKLAGKEAAIF-VPSGTMGNLIAIMTHCDRRDSEI  144 (285)
Q Consensus        78 ~~~~~v~~a~~~~~~~~~--~------y~~~~~~---~~l~-~~la~~~g~~~~~~-~~~Gs~a~~~al~~~~~~~g~~v  144 (285)
                      ..+|++++++.+...+..  .      |...+..   .+++ +.+++++|.+...+ ++||++|++.++++++ ++||+|
T Consensus        56 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~-~~Gd~V  134 (447)
T 3h7f_A           56 FVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLHALM-SPGERL  134 (447)
T ss_dssp             CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC-CTTCEE
T ss_pred             CCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHhc-CCCCEE
Confidence            359999999987764211  1      1222222   3444 88999999988766 9999999999999987 699999


Q ss_pred             EecCCcceeeecccc-cccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413         145 IVGDCSHIMLWEQGG-ASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL  222 (285)
Q Consensus       145 i~~~~~h~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~  222 (285)
                      ++.++.|......+. +.    + ...+...+.++.+ +++.+|+++|++++++.      ++++|++++++|++++   
T Consensus       135 l~~~~~~~~~~~~~~~~~----~-~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~~i~~~~~~~~~~~---  200 (447)
T 3h7f_A          135 LGLDLANGGHLTHGMRLN----F-SGKLYENGFYGVDPATHLIDMDAVRATALEF------RPKVIIAGWSAYPRVL---  200 (447)
T ss_dssp             EEECGGGTCCGGGTCTTS----H-HHHSSEEEEECCCTTTCSCCHHHHHHHHHHH------CCSEEEEECSSCCSCC---
T ss_pred             EecCcccccccchhhhhh----h-cCCeeEEEEcCcCcccCCcCHHHHHHHHHhc------CCeEEEEcCCCCCCcc---
Confidence            998877754211111 11    0 0112344445543 45679999999999652      5789999888887633   


Q ss_pred             CHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         223 PMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       223 ~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      +   +++|+++|++||++||+||+|. ++.      ....++|+++.|+||+|+||+||++++++++++
T Consensus       201 ~---l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~~~di~~~s~sK~l~G~~gG~i~~~~~~~~  266 (447)
T 3h7f_A          201 D---FAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGGGRSGLIVGKQQYAK  266 (447)
T ss_dssp             C---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSGGGCCCSCEEEEECGGGHH
T ss_pred             C---HHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCCCCcEEEecCCcCCCCCCeEEEEECHHHHH
Confidence            5   9999999999999999999975 221      112467999999999999999999999887653

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.85  E-value=7.6e-21  Score=171.92  Aligned_cols=161  Identities=17%  Similarity=0.164  Sum_probs=128.4

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecc-ccc-ccccccccccceeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ-GGA-SQTSVYSQIGRVLMRG  176 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~-~~~-~~~~~~~~~~g~~~~~  176 (285)
                      .+|...+|++.++++.|.+.+++++||++|++.+ ..++ ++||+|++.++.|..+... ... .      ...|.+++.
T Consensus        65 ~~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai~~~-~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~------~~~g~~~~~  136 (400)
T 3nmy_A           65 HNPTRFAYERCVAALEGGTRAFAFASGMAATSTV-MELL-DAGSHVVAMDDLYGGTFRLFERVRR------RTAGLDFSF  136 (400)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHH-HTTS-CTTCEEEEESSCCHHHHHHHHHTHH------HHHCCEEEE
T ss_pred             CCHHHHHHHHHHHHHhCCCCEEEecCHHHHHHHH-HHHc-CCCCEEEEeCCCchHHHHHHHHhhH------hhcCeEEEE
Confidence            5788999999999999999899999999999985 4445 6899999988777533221 111 1      234778887


Q ss_pred             eecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhh
Q psy5413         177 VTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEV  253 (285)
Q Consensus       177 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~  253 (285)
                      ++..     |+++++++|++       ++++|++++|+||+ |.++|   +++|+++|++||+++|+||+|+..   ...
T Consensus       137 v~~~-----d~~~l~~~i~~-------~~~~v~~e~~~np~-G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~~~  200 (400)
T 3nmy_A          137 VDLT-----DPAAFKAAIRA-------DTKMVWIETPTNPM-LKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQRPL  200 (400)
T ss_dssp             ECTT-----SHHHHHHHCCT-------TEEEEEEESSCTTT-CCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCCGG
T ss_pred             ECCC-----CHHHHHHHhcc-------CCCEEEEECCCCCC-Ceeec---HHHHHHHHHHcCCEEEEECCCcccccCChh
Confidence            7763     89999999987       89999999999999 89999   999999999999999999999822   123


Q ss_pred             cccCCeEEEecccccCcc---eeE--EeecCcccc
Q psy5413         254 CASVDTVMFCLSKGLGAP---VGS--ILAGPEEFI  283 (285)
Q Consensus       254 ~~~~dv~~~s~sK~l~~p---~gg--~~~~~~~~i  283 (285)
                      ..++|+++.|++|+++++   +||  +++++++++
T Consensus       201 ~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~  235 (400)
T 3nmy_A          201 SLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELA  235 (400)
T ss_dssp             GGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHH
T ss_pred             hcCCcEEEecCccccCCCCCcceeEEEEeCCHHHH
Confidence            347899999999999974   677  455566554

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.85  E-value=2e-20  Score=171.56  Aligned_cols=211  Identities=12%  Similarity=0.077  Sum_probs=141.3

Q ss_pred             CCeeeeeccCC----cCCCcHHHH-H-HHHh---cccCCCCc---cCChhHHHHHHHHHhHcC---CCcEEEcCChHHHH
Q psy5413          65 NIRTVDIRSDT----ISKPTMEMK-N-YMFN---CEVGDDVY---LEDPTCKELQEKAAKLAG---KEAAIFVPSGTMGN  129 (285)
Q Consensus        65 ~~~~~~~~~~~----~~~~~~~v~-~-a~~~---~~~~~~~y---~~~~~~~~l~~~la~~~g---~~~~~~~~~Gs~a~  129 (285)
                      |+.++||.++.    .++++|++. + |+.+   +......|   ...+...++++.++++++   .+.++|++||++|+
T Consensus        53 g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~  132 (449)
T 2cjg_A           53 GRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAV  132 (449)
T ss_dssp             CCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCTTTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHH
T ss_pred             CcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHH
Confidence            66788886543    345789999 8 9888   65432111   245668999999999984   56789999999999


Q ss_pred             HHHHHHccc--c-----------CCCeEEecC-Ccceeeecccccccc-cccccc---cceeeeeeecCC--CC------
Q psy5413         130 LIAIMTHCD--R-----------RDSEIIVGD-CSHIMLWEQGGASQT-SVYSQI---GRVLMRGVTNQK--DG------  183 (285)
Q Consensus       130 ~~al~~~~~--~-----------~g~~vi~~~-~~h~~~~~~~~~~~~-~~~~~~---~g~~~~~~~~~~--~~------  183 (285)
                      +.+++++..  +           ++++||+.+ .+|+++......... +.+...   ....+..++.++  ..      
T Consensus       133 ~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  212 (449)
T 2cjg_A          133 ENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAA  212 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccch
Confidence            999987541  1           167787765 567665432222200 111111   112444555432  11      


Q ss_pred             --CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----hcc-
Q psy5413         184 --TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE-----VCA-  255 (285)
Q Consensus       184 --~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----~~~-  255 (285)
                        ..++++|+++|++    +.+++++|++++++|++|..+++.+++++|+++|++||++||+||+|+++..     ... 
T Consensus       213 ~~~~~~~~le~~i~~----~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~  288 (449)
T 2cjg_A          213 LEAEALRQARAAFET----RPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQ  288 (449)
T ss_dssp             HHHHHHHHHHHHHHH----STTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHH
T ss_pred             hhHHHHHHHHHHHHh----cCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecc
Confidence              1456778888864    2237999999999999844799999999999999999999999999984421     111 


Q ss_pred             ---cCCeEEEecccccCcceeEEeecCccccc
Q psy5413         256 ---SVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       256 ---~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                         ..|  +.++||++  |.|++++ ++++++
T Consensus       289 ~~~~~d--i~t~sK~l--~iG~~~~-~~~~~~  315 (449)
T 2cjg_A          289 LDVAPD--IVAFGKKT--QVCGVMA-GRRVDE  315 (449)
T ss_dssp             HTCCCS--EEEECGGG--SSEEEEE-CGGGGG
T ss_pred             cCCCce--EEEecCcc--cEEEEEE-CHHHhh
Confidence               234  45788999  7776554 556654

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.75  E-value=6.1e-23  Score=188.49  Aligned_cols=205  Identities=13%  Similarity=0.053  Sum_probs=144.0

Q ss_pred             cCCeeeeeccCCc----CCCcHHHHHHHHhcccCCC-CccCChhHHHHHHHHHhHc-CCCcEEEcCChHHHHHHHHHHcc
Q psy5413          64 VNIRTVDIRSDTI----SKPTMEMKNYMFNCEVGDD-VYLEDPTCKELQEKAAKLA-GKEAAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        64 ~~~~~~~~~~~~~----~~~~~~v~~a~~~~~~~~~-~y~~~~~~~~l~~~la~~~-g~~~~~~~~~Gs~a~~~al~~~~  137 (285)
                      .|++++||.++..    ++.+|+|.+|+.+++.... ...+++...+|++.|++++ +.+.++|++||++|++.|++++.
T Consensus        98 dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~~~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar  177 (465)
T 2yky_A           98 DGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNLSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATAT  177 (465)
Confidence            3677788876554    5589999999998876432 2224677899999999998 77788999999999999999875


Q ss_pred             ccCC-CeEEe-cCCcceeeecccccccccccccccce--eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         138 DRRD-SEIIV-GDCSHIMLWEQGGASQTSVYSQIGRV--LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       138 ~~~g-~~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      ..+| ++||+ ...||+.+....  +. +   ...|.  .++.++.     .|+++|++++++    +++++++|+++++
T Consensus       178 ~~tgr~~ii~~~~~yHG~~~~~~--sg-~---~~~g~~~~~~~~~~-----~d~~~l~~~l~~----~~~~~aavi~epv  242 (465)
T 2yky_A          178 AITGRKTVLAFDGGYHGGLLNFA--SG-H---APTNAPYHVVLGVY-----NDVEGTADLLKR----HGHDCAAILVEPM  242 (465)
Confidence            3344 55655 566787664322  10 0   01122  2223332     388999999975    2238999999998


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh----hcccCCeE--EEecccccCc-ceeEEeecCccccc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE----VCASVDTV--MFCLSKGLGA-PVGSILAGPEEFIQ  284 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~----~~~~~dv~--~~s~sK~l~~-p~gg~~~~~~~~i~  284 (285)
                      ++.+|..+.+.+++++|+++|++||++||+||+|+ +..    ..+..++.  +.+++|++++ ...|++++++++++
T Consensus       243 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~t~sK~lg~G~piG~v~~~~~i~~  319 (465)
T 2yky_A          243 LGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLME  319 (465)
Confidence            77773355678999999999999999999999998 421    12222222  5688999988 33456777787765

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.85  E-value=2.3e-20  Score=169.97  Aligned_cols=213  Identities=15%  Similarity=0.163  Sum_probs=143.1

Q ss_pred             CCeeeeeccCCc----CCCcHHHHHHHHhcccCC-----CCccCChhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHH
Q psy5413          65 NIRTVDIRSDTI----SKPTMEMKNYMFNCEVGD-----DVYLEDPTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        65 ~~~~~~~~~~~~----~~~~~~v~~a~~~~~~~~-----~~y~~~~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al  133 (285)
                      |+.++||.++.+    ++++|++.+++.++....     ..| .++...++++.++++++  .+.++|++||++|++.++
T Consensus        42 g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai  120 (429)
T 1s0a_A           42 GRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGI-THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAM  120 (429)
T ss_dssp             SCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSE-ECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHH
T ss_pred             CCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccccccc-CCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHH
Confidence            567788876542    346899999998776421     123 35667899999999994  567899999999999999


Q ss_pred             HHccc--c----CCCeEEecC-Ccceeeeccccccc-----ccccc-cccceeeeeeecC----CCCCCCHHHHHHHhcc
Q psy5413         134 MTHCD--R----RDSEIIVGD-CSHIMLWEQGGASQ-----TSVYS-QIGRVLMRGVTNQ----KDGTFDLDEMEAKFST  196 (285)
Q Consensus       134 ~~~~~--~----~g~~vi~~~-~~h~~~~~~~~~~~-----~~~~~-~~~g~~~~~~~~~----~~~~~d~~~l~~~i~~  196 (285)
                      +++..  +    +|++|++.+ .+|.+......+..     ...|. ...+...+.++..    ..+.+|+++|++++++
T Consensus       121 ~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~  200 (429)
T 1s0a_A          121 KMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAA  200 (429)
T ss_dssp             HHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHH
T ss_pred             HHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHh
Confidence            87541  2    477888765 56765432211110     00010 0113344444321    1235799999999974


Q ss_pred             cccccCCceEEEEEecc-cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----hcc----cCCeEEEeccc
Q psy5413         197 ADNIHCASTSLVCVENT-HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE-----VCA----SVDTVMFCLSK  266 (285)
Q Consensus       197 ~~~~~~~~~~~v~i~~~-~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----~~~----~~dv~~~s~sK  266 (285)
                          +.+++++|+++++ +|++|..+.+.+++++|+++|++||++||+||+|+++..     ..+    ..|  +.++||
T Consensus       201 ----~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d--~~t~sK  274 (429)
T 1s0a_A          201 ----HRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPD--ILCLGK  274 (429)
T ss_dssp             ----HTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS--EEEECG
T ss_pred             ----CCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCC--EEEecc
Confidence                1227889999988 899944677899999999999999999999999984321     111    234  457889


Q ss_pred             ccCc--ceeEEeecCccccc
Q psy5413         267 GLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       267 ~l~~--p~gg~~~~~~~~i~  284 (285)
                      ++++  .+.|++++++++++
T Consensus       275 ~l~~G~~~iG~~~~~~~~~~  294 (429)
T 1s0a_A          275 ALTGGTMTLSATLTTREVAE  294 (429)
T ss_dssp             GGGTSSSCCEEEEECHHHHH
T ss_pred             cccCCCccceEEEeCHHHHH
Confidence            9986  34567777776653

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.85  E-value=3.9e-21  Score=171.53  Aligned_cols=179  Identities=18%  Similarity=0.164  Sum_probs=139.5

Q ss_pred             cHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccc
Q psy5413          80 TMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGG  159 (285)
Q Consensus        80 ~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~  159 (285)
                      .+++.+++.+.... ..|...+...++++.+++++|.+.+++++||++|++.+++++..++|++|+++.++|..+.... 
T Consensus        15 ~~~v~~a~~~~~~~-~~~~~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~-   92 (367)
T 3nyt_A           15 KDKIDAGIQRVLRH-GQYILGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETV-   92 (367)
T ss_dssp             HHHHHHHHHHHHHH-CCCSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHH-
T ss_pred             CHHHHHHHHHHHhc-CCccCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHH-
Confidence            45777777665542 2455678899999999999999999999999999999999983368999999988886654422 


Q ss_pred             cccccccccccceeeeeeecCCC-CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC
Q psy5413         160 ASQTSVYSQIGRVLMRGVTNQKD-GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN  238 (285)
Q Consensus       160 ~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g  238 (285)
                              ...|.+++.++.+++ +.+|+++++++|++       ++++|+   ++|++ |...+   +++|.++|++||
T Consensus        93 --------~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~-------~~~~v~---~~~~~-G~~~~---~~~i~~la~~~~  150 (367)
T 3nyt_A           93 --------ALLGAKPVYVDIDPRTYNLDPQLLEAAITP-------RTKAII---PVSLY-GQCAD---FDAINAIASKYG  150 (367)
T ss_dssp             --------HHTTCEEEEECBCTTTCSBCGGGTGGGCCT-------TEEEEC---CBCGG-GCCCC---HHHHHHHHHHTT
T ss_pred             --------HHcCCEEEEEecCCccCCcCHHHHHHhcCc-------CCcEEE---eeCCc-cChhh---HHHHHHHHHHcC
Confidence                    234888888887654 78899999999977       889988   45566 88888   999999999999


Q ss_pred             CeEEEeCccC-Chhh----hcccCCeEEEec--ccccCc-ceeEEeecC-ccc
Q psy5413         239 IPVHMDGARL-PLAE----VCASVDTVMFCL--SKGLGA-PVGSILAGP-EEF  282 (285)
Q Consensus       239 i~li~Dea~~-~~~~----~~~~~dv~~~s~--sK~l~~-p~gg~~~~~-~~~  282 (285)
                      ++||+|++|+ +...    .....|++++||  +|++++ ..||+++.+ +++
T Consensus       151 ~~li~D~a~~~g~~~~~~~~~~~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l  203 (367)
T 3nyt_A          151 IPVIEDAAQSFGASYKGKRSCNLSTVACTSFFPSAPLGCYGDGGAIFTNDDEL  203 (367)
T ss_dssp             CCBEEECTTTTTCEETTEETTSSSSEEEEECCTTSSSCCSSCCEEEEESCHHH
T ss_pred             CEEEEECccccCCeECCeeccCCCCEEEEECCCCCcCCCcCceeEEEeCCHHH
Confidence            9999999987 2211    111228888886  899988 567777764 444

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.85  E-value=1.1e-20  Score=172.69  Aligned_cols=207  Identities=13%  Similarity=0.034  Sum_probs=144.4

Q ss_pred             Ceee-eeccCCcCCCc---HHHHHHHHhcccC-------C------CCccCChhHHHHHHHHHhHc--------CCCcEE
Q psy5413          66 IRTV-DIRSDTISKPT---MEMKNYMFNCEVG-------D------DVYLEDPTCKELQEKAAKLA--------GKEAAI  120 (285)
Q Consensus        66 ~~~~-~~~~~~~~~~~---~~v~~a~~~~~~~-------~------~~y~~~~~~~~l~~~la~~~--------g~~~~~  120 (285)
                      +.++ +|..+.+....   +.+.+++.+...+       .      ..|.......++++.+++++        ..+.++
T Consensus        31 ~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~  110 (444)
T 3if2_A           31 DQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIA  110 (444)
T ss_dssp             SSCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred             chhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEE
Confidence            4568 88888877632   3445555544333       1      24665556789999999987        235679


Q ss_pred             EcCChHHHHHHHHHHccccCCC--------------eEEec-CCcceeeecccccccccccccccceeeeeeecCC-C--
Q psy5413         121 FVPSGTMGNLIAIMTHCDRRDS--------------EIIVG-DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-D--  182 (285)
Q Consensus       121 ~~~~Gs~a~~~al~~~~~~~g~--------------~vi~~-~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~--  182 (285)
                      +++||++|+..++++++ ++|+              +|++. .+.|..........  ..+ ...+..++.++.++ +  
T Consensus       111 ~t~G~t~al~~~~~~l~-~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~g~  186 (444)
T 3if2_A          111 LTNGSQNAFFYLFNLFG-GAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEG--QHF-AAVLPHIDEVTHDGEEGF  186 (444)
T ss_dssp             EESSHHHHHHHHHHHSS-EEEECC-------CEEEEEEEESSSSCCGGGTTCCSSS--CCE-EECCCEEEEEEETTEEEE
T ss_pred             EecCcHHHHHHHHHHHh-CCCccccccccccccccceEEEeCCCCccchhhccccc--chh-hccCceEEecccccccCc
Confidence            99999999999999987 5776              67764 44443322111000  000 23467777777643 2  


Q ss_pred             --CCCCHHHHHHH---hcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----hh
Q psy5413         183 --GTFDLDEMEAK---FSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----EV  253 (285)
Q Consensus       183 --~~~d~~~l~~~---i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----~~  253 (285)
                        +.+|+++|+++   +.+       ++++|++++|+||+ |.++|.+++++|+++|++||+++|+||+|....    ..
T Consensus       187 ~~~~~d~~~l~~~l~~~~~-------~~~~v~i~~p~npt-G~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~  258 (444)
T 3if2_A          187 FKYRVDFEALENLPALKEG-------RIGAICCSRPTNPT-GNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYS  258 (444)
T ss_dssp             EEEECCHHHHHTCHHHHTT-------CEEEEEEESSCTTT-CCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCS
T ss_pred             cccCCCHHHHHHHHHhcCC-------CceEEEeCCCCCCC-CCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccc
Confidence              36899999998   444       79999999999999 899999999999999999999999999987211    11


Q ss_pred             -----cccCCeEEEecccccCc-ceeEEeecCccccc
Q psy5413         254 -----CASVDTVMFCLSKGLGA-PVGSILAGPEEFIQ  284 (285)
Q Consensus       254 -----~~~~dv~~~s~sK~l~~-p~gg~~~~~~~~i~  284 (285)
                           ....++++.|+||++.. .+.|+++.++++++
T Consensus       259 ~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~  295 (444)
T 3if2_A          259 DAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIE  295 (444)
T ss_dssp             CCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHH
T ss_pred             cccccCCCCEEEEechhhccCCCCceEEEEECHHHHH
Confidence                 12344669999997433 56678888877653

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.85  E-value=7.6e-21  Score=170.42  Aligned_cols=187  Identities=13%  Similarity=0.052  Sum_probs=138.1

Q ss_pred             CC-eeeeeccCC-cCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCC---CcEEEcCChHHHHHHHHHHcccc
Q psy5413          65 NI-RTVDIRSDT-ISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGK---EAAIFVPSGTMGNLIAIMTHCDR  139 (285)
Q Consensus        65 ~~-~~~~~~~~~-~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~---~~~~~~~~Gs~a~~~al~~~~~~  139 (285)
                      |. +++|+.... ....++++++++..    ..  ++.....++++.+++++|.   +.+++++||++|+..+++++   
T Consensus        26 g~~~v~~~~~~~~~~~~~~~v~~a~~~----~~--~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~---   96 (374)
T 2aeu_A           26 GRDALYDLSGLSGGFLIDEKDKALLNT----YI--GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL---   96 (374)
T ss_dssp             CGGGCEECSSCCCCCCCCHHHHHHHTS----TT--HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH---
T ss_pred             CccceeeecccCCCCCCCHHHHHHHHH----hc--CchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC---
Confidence            44 577877654 34567899999861    11  1123345677777788898   66799999999999999975   


Q ss_pred             CCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEE-EEEecccCCCC
Q psy5413         140 RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSL-VCVENTHNYCG  218 (285)
Q Consensus       140 ~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~-v~i~~~~n~~g  218 (285)
                      +||+|+++.+.|..........      ...|.+++.+       .|+++++++ ++       ++++ |++++|+||+ 
T Consensus        97 ~gd~Vl~~~~~y~~~~~~~~~~------~~~g~~~~~v-------~d~~~l~~~-~~-------~~~~~v~~~~p~npt-  154 (374)
T 2aeu_A           97 KPKKVIHYLPELPGHPSIERSC------KIVNAKYFES-------DKVGEILNK-ID-------KDTLVIITGSTMDLK-  154 (374)
T ss_dssp             CCSEEEEECSSSSCCTHHHHHH------HHTTCEEEEE-------SCHHHHHTT-CC-------TTEEEEEECBCTTSC-
T ss_pred             CCCEEEEecCCCCccHHHHHHH------HHcCcEEEEe-------CCHHHHHhc-CC-------CccEEEEEccCCCCC-
Confidence            8999998877543322100011      2347777766       288999887 54       7899 9999999998 


Q ss_pred             eeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh--------hhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         219 GTVLPMQWLRELKARCQEHNIPVHMDGARLPLA--------EVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       219 G~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~--------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      |.  +..++++|.++|++||+++|+||+|....        ....+.|+++.|+||+++|+++|++++++++++
T Consensus       155 G~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~~~G~~~~~~~~~~  226 (374)
T 2aeu_A          155 VI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVD  226 (374)
T ss_dssp             BC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCSCEEEEEEHHHHH
T ss_pred             CC--CcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCcceEEEEECHHHHH
Confidence            64  56679999999999999999999987321        122357899999999999889999988887764

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.84  E-value=1.1e-20  Score=169.86  Aligned_cols=197  Identities=12%  Similarity=-0.008  Sum_probs=145.1

Q ss_pred             CeeeeeccC---CcCC---CcHHHHHHHHh-cccC--CCCccCChhHHHHHHHHHhHcCC--------C--cEEEcCChH
Q psy5413          66 IRTVDIRSD---TISK---PTMEMKNYMFN-CEVG--DDVYLEDPTCKELQEKAAKLAGK--------E--AAIFVPSGT  126 (285)
Q Consensus        66 ~~~~~~~~~---~~~~---~~~~v~~a~~~-~~~~--~~~y~~~~~~~~l~~~la~~~g~--------~--~~~~~~~Gs  126 (285)
                      ..+++|..+   ++..   .++++.+++.+ ....  ...|.......++++.++++++.        +  .+++++||+
T Consensus        26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~  105 (397)
T 3fsl_A           26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGS  105 (397)
T ss_dssp             SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHH
T ss_pred             CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcH
Confidence            356888777   2332   34799999988 6653  34566556678899999998732        4  568999999


Q ss_pred             HHHHHHHHH--ccccCCCeEEecCCcceeeecccccccccccccccceeeeeeec--CCCCCCCHHHHHHHhcccccccC
Q psy5413         127 MGNLIAIMT--HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN--QKDGTFDLDEMEAKFSTADNIHC  202 (285)
Q Consensus       127 ~a~~~al~~--~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~i~~~~~~~~  202 (285)
                      +|+..+++.  ++ ++||+|+++.++|.......         ...|.+++.++.  .+++.+|++++++++++    +.
T Consensus       106 ~a~~~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~---------~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~----~~  171 (397)
T 3fsl_A          106 GALKVGADFLKRY-FPESGVWVSDPTWENHVAIF---------AGAGFEVSTYPWYDEATNGVRFNDLLATLKT----LQ  171 (397)
T ss_dssp             HHHHHHHHHHHHH-CTTCCEEEESSCCHHHHHHH---------HHTTCCEEEECCEETTTTEECHHHHHHHHTT----CC
T ss_pred             HHHHHHHHHHHhc-CCCCeEEEeCCCchhHHHHH---------HHcCCceEEEeeeeccCCcCcHHHHHHHHHh----CC
Confidence            999999643  34 58999999888775543321         234778888876  34667899999999985    22


Q ss_pred             CceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----------hhcccC--CeEEEecccccC
Q psy5413         203 ASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----------EVCASV--DTVMFCLSKGLG  269 (285)
Q Consensus       203 ~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----------~~~~~~--dv~~~s~sK~l~  269 (285)
                      ++++++++++|+||| |.+++.+++++|+++|++||+++|+||+|..+.           .+....  .+++.|+||.++
T Consensus       172 ~~~~~v~~~~p~npt-G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~  250 (397)
T 3fsl_A          172 AGSIVLLHPCCHNPT-GADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFS  250 (397)
T ss_dssp             TTCEEEECSSSCTTT-CCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTT
T ss_pred             CCCEEEEeCCCCCCC-CcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEeccccccc
Confidence            378999999999999 899999999999999999999999999987221           111122  245899999987


Q ss_pred             c--ceeEEee
Q psy5413         270 A--PVGSILA  277 (285)
Q Consensus       270 ~--p~gg~~~  277 (285)
                      .  .+.|+++
T Consensus       251 ~~G~riG~~~  260 (397)
T 3fsl_A          251 LYGERVGGLS  260 (397)
T ss_dssp             CGGGCCEEEE
T ss_pred             CcCCCeeEEE
Confidence            3  4445653

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.84  E-value=1.4e-20  Score=173.81  Aligned_cols=195  Identities=18%  Similarity=0.220  Sum_probs=144.9

Q ss_pred             eeeeccCCcCCCcHHHHHHHHhcccCCCCccCC-------hhHHHHHHHHHhHcCCCcE-EEcCChHHHHHHHHHHcc--
Q psy5413          68 TVDIRSDTISKPTMEMKNYMFNCEVGDDVYLED-------PTCKELQEKAAKLAGKEAA-IFVPSGTMGNLIAIMTHC--  137 (285)
Q Consensus        68 ~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-------~~~~~l~~~la~~~g~~~~-~~~~~Gs~a~~~al~~~~--  137 (285)
                      ++.+. +...+..|++.+++.+.......|...       +...++++.+++++|.+.. +++++|++|+..+++++.  
T Consensus        68 ~~~lg-~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~  146 (474)
T 1wyu_B           68 FYPLG-SCTMKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAY  146 (474)
T ss_dssp             CCCBT-TTCCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHH
T ss_pred             ccccc-cccccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHH
Confidence            34444 333456688888887663333333321       3467788888999998876 477899999998777653  


Q ss_pred             -ccCCC-----eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413         138 -DRRDS-----EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVE  211 (285)
Q Consensus       138 -~~~g~-----~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~  211 (285)
                       .++||     +|+++.++|..+....         ...|.+++.++.++++.+|+++|+++|++       ++++|+++
T Consensus       147 ~~~~Gd~~~r~~Vlv~~~~h~~~~~~~---------~~~G~~vv~v~~~~~~~~d~~~L~~~i~~-------~t~~v~~~  210 (474)
T 1wyu_B          147 HEDRGEGRTRRVVLVPDSAHGSNPATA---------SMAGYQVREIPSGPEGEVDLEALKRELGP-------HVAALMLT  210 (474)
T ss_dssp             HHHTTCTTTCCEEEEETTSCTHHHHHH---------HHTTCEEEEECBCTTSSBCHHHHHHHCST-------TEEEEEEC
T ss_pred             HHhcCCccCCCEEEEeCCcChhhHHHH---------HHCCCEEEEecCCCCCCcCHHHHHHhhCC-------CceEEEEE
Confidence             13676     8999999997765432         23488999998877888999999999987       79999999


Q ss_pred             cccCCCCeee-CCHHHHHHHHHHHHHcCCeEEEeCccCC----hhh-hcccCCeEEEecccccCcc------eeEEeecC
Q psy5413         212 NTHNYCGGTV-LPMQWLRELKARCQEHNIPVHMDGARLP----LAE-VCASVDTVMFCLSKGLGAP------VGSILAGP  279 (285)
Q Consensus       212 ~~~n~~gG~~-~~~~~l~~i~~la~~~gi~li~Dea~~~----~~~-~~~~~dv~~~s~sK~l~~p------~gg~~~~~  279 (285)
                      +|+ ++ |.+ .+   +++|+++|++||+++|+||+|..    ... ...+.|+++.++||++++|      ..|+++.+
T Consensus       211 ~pn-~~-G~~~~~---l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~  285 (474)
T 1wyu_B          211 NPN-TL-GLFERR---ILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVK  285 (474)
T ss_dssp             SSC-TT-SCCCTT---HHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEEC
T ss_pred             CCC-CC-cccCCC---HHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCCeEEEEEc
Confidence            984 67 777 46   99999999999999999999861    111 1236899999999999865      46788777


Q ss_pred             ccccc
Q psy5413         280 EEFIQ  284 (285)
Q Consensus       280 ~~~i~  284 (285)
                      +++++
T Consensus       286 ~~l~~  290 (474)
T 1wyu_B          286 AHLAP  290 (474)
T ss_dssp             GGGGG
T ss_pred             HHHHH
Confidence            77654

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.84  E-value=2.3e-20  Score=173.31  Aligned_cols=195  Identities=15%  Similarity=0.157  Sum_probs=140.0

Q ss_pred             CCCcHHHHHHHHhcccC--CCCccCChhHHHHHHH----HHhHcCC---CcEEEcCChHHHHHHHHHHccc---------
Q psy5413          77 SKPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEK----AAKLAGK---EAAIFVPSGTMGNLIAIMTHCD---------  138 (285)
Q Consensus        77 ~~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~----la~~~g~---~~~~~~~~Gs~a~~~al~~~~~---------  138 (285)
                      +...+.+++++.....+  ...|...+...++++.    +++++|.   +.++|++|||+|++.++.++..         
T Consensus       110 ~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~  189 (497)
T 2qma_A          110 PPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGH  189 (497)
T ss_dssp             CCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhccc
Confidence            34577888887654443  2345656666666666    7888887   3569999999999999998521         


Q ss_pred             ---cC------CC-eEEecCCcceeeecccccccccccccccce-eeeeeecCCCCCCCHHHHHHHhcccccccCCceEE
Q psy5413         139 ---RR------DS-EIIVGDCSHIMLWEQGGASQTSVYSQIGRV-LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       139 ---~~------g~-~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                         .+      |+ .|+++...|.+........      . .|. +++.+|.++++.+|+++|+++|+++... +.++.+
T Consensus       190 ~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~------g-~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~-~~~~~~  261 (497)
T 2qma_A          190 SIQKLGLPDYADKLRIVCSKKSHFTVQKSASWM------G-LGEKAVMTVDANADGTMDITKLDEVIAQAKAE-GLIPFA  261 (497)
T ss_dssp             CHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHT------T-SCGGGEEEECBCTTSSBCGGGHHHHHHHHHHT-TCEEEE
T ss_pred             chhhcccccccCCeEEEECCCchHHHHHHHHHc------C-CCcccEEEEecCCCCcCCHHHHHHHHHHHHHC-CCcceE
Confidence               12      35 6888888887765533333      1 133 6788888778889999999999762111 112458


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-------h--cccCCeEEEecccccCcc--eeEEe
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE-------V--CASVDTVMFCLSKGLGAP--VGSIL  276 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-------~--~~~~dv~~~s~sK~l~~p--~gg~~  276 (285)
                      |+++.++|++ |.+.|   +++|+++|++||+|+|+|++|++...       +  .+.+|++++++|||+++|  .|+++
T Consensus       262 vv~~~~~~~t-G~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~  337 (497)
T 2qma_A          262 IVGTAGTTDH-GAIDD---LDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGALL  337 (497)
T ss_dssp             EEEEBSCTTT-CCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSSCEEEE
T ss_pred             EEEcCCCCCC-CCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcceEEEE
Confidence            8889999999 88999   99999999999999999999882211       1  147799999999999885  45566


Q ss_pred             ecCcccc
Q psy5413         277 AGPEEFI  283 (285)
Q Consensus       277 ~~~~~~i  283 (285)
                      +.++..+
T Consensus       338 ~~~~~~~  344 (497)
T 2qma_A          338 VNDKSNF  344 (497)
T ss_dssp             ESCGGGG
T ss_pred             EeCHHHH
Confidence            6666543

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.84  E-value=2.3e-20  Score=167.84  Aligned_cols=205  Identities=14%  Similarity=0.057  Sum_probs=137.4

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccCC----CCccCChhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD----DVYLEDPTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~----~~y~~~~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~  134 (285)
                      |+.++||.++    ..++++|++.+++.++....    ..| ..+...++++.++++++  .+.+++++||++|+..+++
T Consensus        44 g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~  122 (395)
T 1vef_A           44 GNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTL-PTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALK  122 (395)
T ss_dssp             SCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTS-CCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHH
T ss_pred             CCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCcccc-CCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHH
Confidence            4577888765    23448899999988766421    123 46779999999999994  4567999999999999998


Q ss_pred             Hccc-cCCCeEEecCC-cceeeecccccccccccc---cccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413         135 THCD-RRDSEIIVGDC-SHIMLWEQGGASQTSVYS---QIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVC  209 (285)
Q Consensus       135 ~~~~-~~g~~vi~~~~-~h~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~  209 (285)
                      ++.. .++++|++.++ +|..............+.   ......+..++.     .|+++|++++++       ++++|+
T Consensus       123 ~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~-------~~~~v~  190 (395)
T 1vef_A          123 FARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVDE-------ETAAVI  190 (395)
T ss_dssp             HHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCCT-------TEEEEE
T ss_pred             HHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCC-----CcHHHHHHHhcc-------CEEEEE
Confidence            7631 36777776554 555443221111000000   000001222222     489999999986       789999


Q ss_pred             EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh--------h-cccCCeEEEecccccCc-ceeEEeecC
Q psy5413         210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE--------V-CASVDTVMFCLSKGLGA-PVGSILAGP  279 (285)
Q Consensus       210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~--------~-~~~~dv~~~s~sK~l~~-p~gg~~~~~  279 (285)
                      +++++|++|....+.+++++|+++|++||++||+||+|+++..        . ....|++  ++||++++ .+.|+++.+
T Consensus       191 ~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~  268 (395)
T 1vef_A          191 LEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALGGGVPLGVAVMR  268 (395)
T ss_dssp             ECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCEEEEEE
T ss_pred             EeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEcccccCCCceEEEEeh
Confidence            9999998833456789999999999999999999999984321        1 1235655  77999987 334556555


Q ss_pred             ccccc
Q psy5413         280 EEFIQ  284 (285)
Q Consensus       280 ~~~i~  284 (285)
                      +++++
T Consensus       269 ~~~~~  273 (395)
T 1vef_A          269 EEVAR  273 (395)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            55543

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.84  E-value=1.5e-20  Score=172.20  Aligned_cols=213  Identities=17%  Similarity=0.159  Sum_probs=139.8

Q ss_pred             CCeeeeeccCC----cCCCcHHHHHHHHhcccCC--CC--ccCChhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDT----ISKPTMEMKNYMFNCEVGD--DV--YLEDPTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~----~~~~~~~v~~a~~~~~~~~--~~--y~~~~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~  134 (285)
                      |+.++||.++.    .++++|++.+++.+++...  ..  .+..+...++++.++++++  .+.++|++||++|++.+++
T Consensus        49 g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~  128 (449)
T 3a8u_X           49 GRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVK  128 (449)
T ss_dssp             CCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHH
T ss_pred             CCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHH
Confidence            56678876433    3456899999998877542  12  2345678899999999984  4567999999999999999


Q ss_pred             Hccc-------cCCCeEEe-cCCcceeeecccccccccccccc-----cceeeeeeecCCC---CCCC--------HHHH
Q psy5413         135 THCD-------RRDSEIIV-GDCSHIMLWEQGGASQTSVYSQI-----GRVLMRGVTNQKD---GTFD--------LDEM  190 (285)
Q Consensus       135 ~~~~-------~~g~~vi~-~~~~h~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~---~~~d--------~~~l  190 (285)
                      ++..       .++++|++ ...+|.++.........+.+...     .+...+.++....   ..+|        +++|
T Consensus       129 ~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~l  208 (449)
T 3a8u_X          129 MVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADEL  208 (449)
T ss_dssp             HHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHH
Confidence            8763       14677776 55667655322211100011111     1344444432111   1135        9999


Q ss_pred             HHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----hcc----cCCeEE
Q psy5413         191 EAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE-----VCA----SVDTVM  261 (285)
Q Consensus       191 ~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----~~~----~~dv~~  261 (285)
                      +++|++.   ..+++++|++++.+|++|..+.+.+++++|+++|++||++||+||+|+++..     ..+    ..|++ 
T Consensus       209 e~~l~~~---~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~-  284 (449)
T 3a8u_X          209 LKLIELH---DASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLM-  284 (449)
T ss_dssp             HHHHHHH---CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE-
T ss_pred             HHHHHhc---CCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCCCEE-
Confidence            9999741   0127899999998888733466799999999999999999999999963321     111    23544 


Q ss_pred             EecccccCc---ceeEEeecCcccc
Q psy5413         262 FCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       262 ~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                       ++||++++   |.|+ ++.+++++
T Consensus       285 -s~sK~l~~G~~~~G~-~~~~~~~~  307 (449)
T 3a8u_X          285 -CIAKQVTNGAIPMGA-VIASTEIY  307 (449)
T ss_dssp             -EECGGGGTTSSCCEE-EEEEHHHH
T ss_pred             -EEcccccCCCCceEE-EEECHHHH
Confidence             88899986   3554 55556654

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.84  E-value=2.4e-20  Score=166.41  Aligned_cols=204  Identities=19%  Similarity=0.156  Sum_probs=139.7

Q ss_pred             CCeeeeeccCCc---C-CCcHHHHHHHHhcccC----CCCccCChhHHHHHHHHHhHcCC-CcEEEcCChHHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTI---S-KPTMEMKNYMFNCEVG----DDVYLEDPTCKELQEKAAKLAGK-EAAIFVPSGTMGNLIAIMT  135 (285)
Q Consensus        65 ~~~~~~~~~~~~---~-~~~~~v~~a~~~~~~~----~~~y~~~~~~~~l~~~la~~~g~-~~~~~~~~Gs~a~~~al~~  135 (285)
                      |+.++||.++.+   . ++++++.+++.+....    ...| +.+...++++.+++++|. +.+++++||++|+..++++
T Consensus        27 g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y-~~~~~~~l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~  105 (375)
T 2eh6_A           27 GKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLY-ENPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKL  105 (375)
T ss_dssp             CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTB-CCHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHH
T ss_pred             CCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCccc-CCHHHHHHHHHHHhhcCCCCeEEEeCchHHHHHHHHHH
Confidence            567889987643   2 2788999998876542    1245 456789999999999998 7789999999999999986


Q ss_pred             c--cc---cCC-CeEEecCCc-ceeeecccccccccccccc---cceeeeeeecCCCCCCCHHHHHHHhcccccccCCce
Q psy5413         136 H--CD---RRD-SEIIVGDCS-HIMLWEQGGASQTSVYSQI---GRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCAST  205 (285)
Q Consensus       136 ~--~~---~~g-~~vi~~~~~-h~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~  205 (285)
                      +  ..   ++| ++|++.++. |.+............+...   ....+..++.     .|+++|++++++       ++
T Consensus       106 ~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~-------~~  173 (375)
T 2eh6_A          106 ARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-----NDIDSVYKLLDE-------ET  173 (375)
T ss_dssp             HHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-----TCHHHHHTTCCT-------TE
T ss_pred             HHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-----chHHHHHHHhcC-------Ce
Confidence            3  22   467 888887654 5543321111100000000   0001222222     489999999976       79


Q ss_pred             EEEEEecccCCCCeee-CCHHHHHHHHHHHHHcCCeEEEeCccCChhh------h-ccc--CCeEEEecccccCc-ceeE
Q psy5413         206 SLVCVENTHNYCGGTV-LPMQWLRELKARCQEHNIPVHMDGARLPLAE------V-CAS--VDTVMFCLSKGLGA-PVGS  274 (285)
Q Consensus       206 ~~v~i~~~~n~~gG~~-~~~~~l~~i~~la~~~gi~li~Dea~~~~~~------~-~~~--~dv~~~s~sK~l~~-p~gg  274 (285)
                      ++|++++++|++ |.+ .+.+++++|+++|++||+++|+||+|+++..      . ..+  .|++  ++||++++ .+.|
T Consensus       174 ~~v~~~~~~~~t-G~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~--s~SK~~~~g~~~G  250 (375)
T 2eh6_A          174 AGIIIEVIQGEG-GVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI--ALAKGLGGGVPIG  250 (375)
T ss_dssp             EEEEECSEETTT-TSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSCCE
T ss_pred             EEEEEeCccCCC-CCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEE--EEcccccCCCCeE
Confidence            999999999999 555 6799999999999999999999999883211      1 112  5655  67799987 3445


Q ss_pred             EeecCccccc
Q psy5413         275 ILAGPEEFIQ  284 (285)
Q Consensus       275 ~~~~~~~~i~  284 (285)
                      +++.++++++
T Consensus       251 ~~~~~~~~~~  260 (375)
T 2eh6_A          251 AILAREEVAQ  260 (375)
T ss_dssp             EEEEEHHHHT
T ss_pred             EEEEcHHHHh
Confidence            6666666654

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.84  E-value=5.3e-21  Score=186.65  Aligned_cols=236  Identities=15%  Similarity=0.134  Sum_probs=150.9

Q ss_pred             CCccccccccc--cccccCCC----CCccceeeccCCccccccccCCeeeeeccCCcCCC-cHHHHHHHHhccc--CCCC
Q psy5413          26 TPALVESTPLS--RSWSDNGN----LSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKP-TMEMKNYMFNCEV--GDDV   96 (285)
Q Consensus        26 ~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~a~~~~~~--~~~~   96 (285)
                      +|..+.++.+.  +.|+..++    .++++++.||..                  +.++. +|++.+|+.+|+.  .+..
T Consensus       356 ~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~------------------~lGh~~~p~i~~Ai~~Q~~~l~h~~  417 (831)
T 4a0g_A          356 TVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQ------------------GPDPTFQAELAREMGYTAARFGHVM  417 (831)
T ss_dssp             GCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTC------------------CCCHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             CCeEEEEeeccceEEEECCCCccchheeeecccHhhc------------------CCCCCCCHHHHHHHHHHHhhccccc
Confidence            34555566553  66665555    556666666653                  33778 9999999998875  2332


Q ss_pred             c--cCChhHHHHHHHHHhHcC---CCcEEEcCChHHHHHHHHHHccc----cC-----------CC-eEEe-cCCcceee
Q psy5413          97 Y--LEDPTCKELQEKAAKLAG---KEAAIFVPSGTMGNLIAIMTHCD----RR-----------DS-EIIV-GDCSHIML  154 (285)
Q Consensus        97 y--~~~~~~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~al~~~~~----~~-----------g~-~vi~-~~~~h~~~  154 (285)
                      +  ..++...+|+++|+++.+   .++++|++|||+||+.|++++++    .+           ++ +||. ...||+.+
T Consensus       418 ~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T  497 (831)
T 4a0g_A          418 FPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDT  497 (831)
T ss_dssp             CTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSS
T ss_pred             ccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCc
Confidence            2  245678899999999986   56789999999999999999831    11           23 3443 67889887


Q ss_pred             eccccccccccccc--------ccce-------------eeeeeecCCC-------CCCC------------------HH
Q psy5413         155 WEQGGASQTSVYSQ--------IGRV-------------LMRGVTNQKD-------GTFD------------------LD  188 (285)
Q Consensus       155 ~~~~~~~~~~~~~~--------~~g~-------------~~~~~~~~~~-------~~~d------------------~~  188 (285)
                      ..+..++....|..        .++.             ..+..|....       ...+                  ++
T Consensus       498 ~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  577 (831)
T 4a0g_A          498 LGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSA  577 (831)
T ss_dssp             HHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHH
T ss_pred             eeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHH
Confidence            55333321122221        1111             1112221000       0012                  35


Q ss_pred             HHHHHhcccc-cccCCceEEEEEecc-cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE-
Q psy5413         189 EMEAKFSTAD-NIHCASTSLVCVENT-HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV-  260 (285)
Q Consensus       189 ~l~~~i~~~~-~~~~~~~~~v~i~~~-~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~-  260 (285)
                      +|++.|++.. ..+.+++++|++|++ ++.+|..++|+++|++|+++|++||++||+||+++++     .+..+..++. 
T Consensus       578 ~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~P  657 (831)
T 4a0g_A          578 YLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKP  657 (831)
T ss_dssp             HHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCC
T ss_pred             HHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCC
Confidence            6777775311 123458999999997 9998888899999999999999999999999998843     2223333333 


Q ss_pred             -EEecccccCc---ceeEEeecC
Q psy5413         261 -MFCLSKGLGA---PVGSILAGP  279 (285)
Q Consensus       261 -~~s~sK~l~~---p~gg~~~~~  279 (285)
                       +++++|.|++   |+|++++++
T Consensus       658 DiitlsK~L~gG~~Plgav~~~~  680 (831)
T 4a0g_A          658 DIACFAKLLTGGMVPLAVTLATD  680 (831)
T ss_dssp             SEEEECGGGGTTSSCCEEEEECH
T ss_pred             cEEEEecccccCccCcEEEEECH
Confidence             5678899966   667666553

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.84  E-value=1.7e-20  Score=167.14  Aligned_cols=182  Identities=14%  Similarity=0.109  Sum_probs=142.2

Q ss_pred             CCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHc---cccCCCeEEecCCccee
Q psy5413          77 SKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTH---CDRRDSEIIVGDCSHIM  153 (285)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~---~~~~g~~vi~~~~~h~~  153 (285)
                      ...+|++++++.+..... .+.+.+...++++.+++++|.+.+++++||++|+..+++++   . ++|++|+++.+.|..
T Consensus         9 ~~~~~~v~~a~~~~~~~~-~~~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~-~~gd~Vl~~~~~~~~   86 (375)
T 2fnu_A            9 PCLDKEDKKAVLEVLNSK-QLTQGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFS-ADRNEIITTPISFVA   86 (375)
T ss_dssp             CCCCHHHHHHHHHHHTSS-CCSSSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCC-TTSCEEEECSSSCTH
T ss_pred             CCCCHHHHHHHHHHHHcC-cccCChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccC-CCCCEEEECCCccHh
Confidence            346889999998876532 34456789999999999999998899999999999999998   5 589999999888866


Q ss_pred             eecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHH
Q psy5413         154 LWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR  233 (285)
Q Consensus       154 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~l  233 (285)
                      .....         ...|.+++.++.++++.+|+++|++++++       ++++|+++++   + |.+.|   +++|.++
T Consensus        87 ~~~~~---------~~~g~~~~~~~~~~~~~~d~~~l~~~i~~-------~~~~v~~~~~---t-G~~~~---l~~i~~l  143 (375)
T 2fnu_A           87 TANML---------LESGYTPVFAGIKNDGNIDELALEKLINE-------RTKAIVSVDY---A-GKSVE---VESVQKL  143 (375)
T ss_dssp             HHHHH---------HHTTCEEEECCBCTTSSBCGGGSGGGCCT-------TEEEEEEECG---G-GCCCC---HHHHHHH
T ss_pred             HHHHH---------HHCCCEEEEeccCCCCCCCHHHHHhhcCc-------CceEEEEeCC---c-CCccC---HHHHHHH
Confidence            54322         23488888888766667899999999976       7899888887   4 89999   9999999


Q ss_pred             HHHcCCeEEEeCccCCh-hh----hcccCCeEEEecc--cccCcceeEEeec-Ccccc
Q psy5413         234 CQEHNIPVHMDGARLPL-AE----VCASVDTVMFCLS--KGLGAPVGSILAG-PEEFI  283 (285)
Q Consensus       234 a~~~gi~li~Dea~~~~-~~----~~~~~dv~~~s~s--K~l~~p~gg~~~~-~~~~i  283 (285)
                      |++||+++|+||+|+.. ..    +....|+++.|++  |++++..|++++. +++++
T Consensus       144 ~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K~~~~g~g~~~~~~~~~~~  201 (375)
T 2fnu_A          144 CKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTAEGGAVVTNDSELH  201 (375)
T ss_dssp             HHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHH
T ss_pred             HHHcCCEEEEECccccCCeECCeeccccCCeEEEeCCCCCCccccCceEEEeCCHHHH
Confidence            99999999999998821 11    1112367788887  9997556777764 35553

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.84  E-value=4.1e-20  Score=172.23  Aligned_cols=189  Identities=18%  Similarity=0.214  Sum_probs=140.1

Q ss_pred             cHHHH-HHHHhccc-CCCCccCChhHHHHHHHHHhH----cCCC----cEEEcCChHHHHHHHHHHcccc----------
Q psy5413          80 TMEMK-NYMFNCEV-GDDVYLEDPTCKELQEKAAKL----AGKE----AAIFVPSGTMGNLIAIMTHCDR----------  139 (285)
Q Consensus        80 ~~~v~-~a~~~~~~-~~~~y~~~~~~~~l~~~la~~----~g~~----~~~~~~~Gs~a~~~al~~~~~~----------  139 (285)
                      .+.++ +++.+... +...|...+...++|+.++++    +|.+    .++|++|||+|+..++.++..+          
T Consensus       108 ~~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~  187 (511)
T 3vp6_A          108 IIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGM  187 (511)
T ss_dssp             HHHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCG
T ss_pred             HHHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCc
Confidence            44444 34443332 235677778888888766554    5765    4589999999999999887642          


Q ss_pred             ---CCCeEEecCCcceeeecccccccccccccccce---eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         140 ---RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRV---LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       140 ---~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                         +++.|+++...|.+........         |.   +++.++.++++.+|+++|+++|+++. ..+..+++|+++.+
T Consensus       188 ~~~~~~~v~~s~~~H~s~~~~~~~~---------g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~-~~g~~~~~vv~~~~  257 (511)
T 3vp6_A          188 AAVPKLVLFTSEQSHYSIKKAGAAL---------GFGTDNVILIKCNERGKIIPADFEAKILEAK-QKGYVPFYVNATAG  257 (511)
T ss_dssp             GGSCCEEEEEETTSCTHHHHHHHHT---------TSCGGGEEEECBCTTSCBCHHHHHHHHHHHH-HTTCEEEEEEEEBS
T ss_pred             ccCCCeEEEECCCchHHHHHHHHHc---------CCCCCcEEEeecCCCCccCHHHHHHHHHHHH-hcCCCcEEEEEecC
Confidence               3457888999998776644443         44   78888887788999999999997731 12234899999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh----------hcccCCeEEEecccccCcce--eEEeecCcc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE----------VCASVDTVMFCLSKGLGAPV--GSILAGPEE  281 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~----------~~~~~dv~~~s~sK~l~~p~--gg~~~~~~~  281 (285)
                      +|++ |.+.|   |++|+++|++||+|+|+|++|++...          -.+++|++++++||||++|.  |++++.+++
T Consensus       258 ~~~~-G~vd~---l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~  333 (511)
T 3vp6_A          258 TTVY-GAFDP---IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKG  333 (511)
T ss_dssp             CSSS-CCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTT
T ss_pred             CCCC-ccccc---HHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHH
Confidence            9999 89988   99999999999999999999883211          12467999999999998853  445566655


Q ss_pred             c
Q psy5413         282 F  282 (285)
Q Consensus       282 ~  282 (285)
                      +
T Consensus       334 ~  334 (511)
T 3vp6_A          334 I  334 (511)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.84  E-value=3.2e-20  Score=173.02  Aligned_cols=157  Identities=20%  Similarity=0.150  Sum_probs=125.1

Q ss_pred             HHHHHHHHhHcCCC----cE--EEcCChHHHHHHHHHHccccCC--------CeEEecCCcceeeecccccccccccccc
Q psy5413         104 KELQEKAAKLAGKE----AA--IFVPSGTMGNLIAIMTHCDRRD--------SEIIVGDCSHIMLWEQGGASQTSVYSQI  169 (285)
Q Consensus       104 ~~l~~~la~~~g~~----~~--~~~~~Gs~a~~~al~~~~~~~g--------~~vi~~~~~h~~~~~~~~~~~~~~~~~~  169 (285)
                      .++++.+++++|.+    .+  ++++||++|++.++++++. ++        ++|+++.++|........         .
T Consensus       142 ~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~-~g~~~~g~~~d~Vi~~~~~~~~~~~~~~---------~  211 (514)
T 3mad_A          142 AEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRD-WARATKGITAPEAVVPVSAHAAFDKAAQ---------Y  211 (514)
T ss_dssp             HHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHH-HHHHHHCCSSCEEEEETTSCTHHHHHHH---------H
T ss_pred             HHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHH-HhhhhcCCCCCeEEEeCccchHHHHHHH---------H
Confidence            34556668888876    45  9999999999999999873 44        789999988876544322         3


Q ss_pred             cceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC
Q psy5413         170 GRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP  249 (285)
Q Consensus       170 ~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~  249 (285)
                      .|.+++.++.++++.+|+++|+++|++       ++++|++++++|++ |.+.|   +++|+++|++||++||+||+|++
T Consensus       212 ~G~~v~~v~~~~~~~~d~~~Le~~i~~-------~~~~v~~~~~~npt-G~~~~---l~~i~~la~~~~i~livDea~~~  280 (514)
T 3mad_A          212 FGIKLVRTPLDADYRADVAAMREAITP-------NTVVVAGSAPGYPH-GVVDP---IPEIAALAAEHGIGCHVDACLGG  280 (514)
T ss_dssp             HTCEEEEECBCTTSCBCHHHHHHHCCT-------TEEEEEEETTCTTT-CCCCC---HHHHHHHHHHHTCEEEEECTTTT
T ss_pred             cCCeeEEeeeCCCCCCCHHHHHHHhcc-------CCEEEEEeCCCCCC-ccccC---HHHHHHHHHHhCCeEEEeccccc
Confidence            488899999877888999999999987       79999999999999 89999   99999999999999999999883


Q ss_pred             hh---------------hhcccCCeEEEecccccCc--ceeEEeecCcc
Q psy5413         250 LA---------------EVCASVDTVMFCLSKGLGA--PVGSILAGPEE  281 (285)
Q Consensus       250 ~~---------------~~~~~~dv~~~s~sK~l~~--p~gg~~~~~~~  281 (285)
                      ..               ....++|+++.+++|++++  +.|++++.++.
T Consensus       281 ~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~  329 (514)
T 3mad_A          281 FILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPD  329 (514)
T ss_dssp             TTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHH
T ss_pred             ccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHH
Confidence            21               1234678999999999655  34444455543

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.84  E-value=1.6e-20  Score=169.98  Aligned_cols=161  Identities=17%  Similarity=0.153  Sum_probs=130.2

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecc-cccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~  177 (285)
                      .++...++++.+++++|.+..+++++|++|+..+++ ++ ++|++|+++++.|..+... ....      ...|.+++.+
T Consensus        65 ~~p~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~-l~-~~gd~Vl~~~~~y~~~~~~~~~~~------~~~G~~v~~v  136 (403)
T 3cog_A           65 GNPTRNCLEKAVAALDGAKYCLAFASGLAATVTITH-LL-KAGDQIICMDDVYGGTNRYFRQVA------SEFGLKISFV  136 (403)
T ss_dssp             -CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHT-TS-CTTCEEEEESSCCHHHHHHHHHTG------GGGTCEEEEE
T ss_pred             CCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-Hh-CCCCEEEEeCCCcchHHHHHHHHH------HHcCCEEEEE
Confidence            468899999999999998888888999999999998 66 6899999988777543221 1112      3458888888


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC-CeEEEeCccCChh---hh
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN-IPVHMDGARLPLA---EV  253 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g-i~li~Dea~~~~~---~~  253 (285)
                      +..     |+++++++|++       ++++|++++|+||+ |.++|   +++|+++|++|| +++|+||+|....   .+
T Consensus       137 ~~~-----d~~~l~~~i~~-------~t~~v~~~~p~npt-G~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~~~~  200 (403)
T 3cog_A          137 DCS-----KIKLLEAAITP-------ETKLVWIETPTNPT-QKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQRPL  200 (403)
T ss_dssp             CTT-----SHHHHHHHCCT-------TEEEEEEESSCTTT-CCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTCCTT
T ss_pred             CCC-----CHHHHHHhcCc-------CCeEEEEECCCCCC-CeeeC---HHHHHHHHHHcCCCEEEEECCCcccccCCcc
Confidence            763     89999999987       89999999999999 89999   999999999999 9999999988331   23


Q ss_pred             cccCCeEEEecccccCcc---eeEEeec-Ccccc
Q psy5413         254 CASVDTVMFCLSKGLGAP---VGSILAG-PEEFI  283 (285)
Q Consensus       254 ~~~~dv~~~s~sK~l~~p---~gg~~~~-~~~~i  283 (285)
                      ..+.|+++.|++|++++|   ++|+++. +++++
T Consensus       201 ~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~  234 (403)
T 3cog_A          201 ALGADISMYSATKYMNGHSDVVMGLVSVNCESLH  234 (403)
T ss_dssp             TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHH
T ss_pred             ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHH
Confidence            347899999999999984   3678776 45654

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.84  E-value=1.2e-20  Score=169.63  Aligned_cols=177  Identities=16%  Similarity=0.146  Sum_probs=136.8

Q ss_pred             cHHHHHHHHhcccCCCCcc-CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc
Q psy5413          80 TMEMKNYMFNCEVGDDVYL-EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG  158 (285)
Q Consensus        80 ~~~v~~a~~~~~~~~~~y~-~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~  158 (285)
                      .+++.+++.+.... ..|. ..+...++++.++++++.+.+++++||++|++.+++++..++|++|+++.++|.......
T Consensus        35 ~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~  113 (391)
T 3dr4_A           35 DGNERDYVLECMDT-TWISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSV  113 (391)
T ss_dssp             CSSHHHHHHHHHHH-TCCSSCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHHH
T ss_pred             CHHHHHHHHHHHHc-CCccCCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHHHH
Confidence            36777887765543 2344 678899999999999999999999999999999999982368999999988876554322


Q ss_pred             ccccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc
Q psy5413         159 GASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH  237 (285)
Q Consensus       159 ~~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~  237 (285)
                               ...|.+++.++.+ +++.+|++++++++++       ++++|+++   |++ |.+.+   +++|+++|++|
T Consensus       114 ---------~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~v~~~---n~t-G~~~~---~~~i~~l~~~~  170 (391)
T 3dr4_A          114 ---------TYCGATPVLVDNDPRTFNLDAAKLEALITP-------RTKAIMPV---HLY-GQICD---MDPILEVARRH  170 (391)
T ss_dssp             ---------HHTTCEEEEECBCTTTCSBCGGGSGGGCCT-------TEEEECCB---CGG-GCCCC---HHHHHHHHHHT
T ss_pred             ---------HHCCCEEEEEecCccccCcCHHHHHHhcCC-------CceEEEEE---CCC-CChhh---HHHHHHHHHHc
Confidence                     2348888888876 4567899999999977       78888854   566 88888   99999999999


Q ss_pred             CCeEEEeCccC-Chhh----hcccCCeEEEecc--cccCcceeEEeecCc
Q psy5413         238 NIPVHMDGARL-PLAE----VCASVDTVMFCLS--KGLGAPVGSILAGPE  280 (285)
Q Consensus       238 gi~li~Dea~~-~~~~----~~~~~dv~~~s~s--K~l~~p~gg~~~~~~  280 (285)
                      |+++|+|++|+ +...    .....|+.++|++  |+++++.||+++.++
T Consensus       171 ~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~~K~l~~g~gg~~~~~~  220 (391)
T 3dr4_A          171 NLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITTGEGGMITTND  220 (391)
T ss_dssp             TCEEEEECTTCTTCEETTEETTSSSSEEEEECBTTSSSCCBSCEEEEESC
T ss_pred             CCEEEEECcccccceECCeeecccCCEEEEECCCCCcCCcCCeEEEEECC
Confidence            99999999988 2221    1122477777755  999887777776554

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.84  E-value=2.6e-20  Score=168.53  Aligned_cols=192  Identities=12%  Similarity=0.107  Sum_probs=139.6

Q ss_pred             eeeccCCcCCCcHHHHHHHHhcccCC---C----Cc--cCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHcc
Q psy5413          69 VDIRSDTISKPTMEMKNYMFNCEVGD---D----VY--LEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        69 ~~~~~~~~~~~~~~v~~a~~~~~~~~---~----~y--~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~  137 (285)
                      +.|.....+.+++++.+++.++....   .    .|  +..+...++++.+++++|.+  .+++++||++++..++++++
T Consensus        30 ~yld~~~~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~  109 (416)
T 1qz9_A           30 IYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAAL  109 (416)
T ss_dssp             EECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHH
T ss_pred             EeecCCCcCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhc
Confidence            44444444567889999988776531   1    11  11356789999999999975  57899999999998888765


Q ss_pred             -c----cCCCe-EEecCCcceeeeccc-cccccccccccc--ceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEE
Q psy5413         138 -D----RRDSE-IIVGDCSHIMLWEQG-GASQTSVYSQIG--RVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLV  208 (285)
Q Consensus       138 -~----~~g~~-vi~~~~~h~~~~~~~-~~~~~~~~~~~~--g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v  208 (285)
                       .    ++|++ |++++.+|.++.... .+.      ...  |.+++.++.       +++|+++|++       ++++|
T Consensus       110 ~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~------~~~~~g~~~~~v~~-------~~~l~~~i~~-------~~~~v  169 (416)
T 1qz9_A          110 RVQATRSPERRVIVTETSNFPTDLYIAEGLA------DMLQQGYTLRLVDS-------PEELPQAIDQ-------DTAVV  169 (416)
T ss_dssp             HHHHHHSTTCCEEEEETTSCHHHHHHHHHHH------HHHCSSCEEEEESS-------GGGHHHHCST-------TEEEE
T ss_pred             ccccccCCCCcEEEEcCCCCCchHHHHHHHH------HHhcCCceEEEeCc-------HHHHHHHhCC-------CceEE
Confidence             1    47876 555667776443211 111      122  667777764       6788888876       78999


Q ss_pred             EEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh--hh-cccCCeEEEecccccC-ccee-EEeecCccc
Q psy5413         209 CVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA--EV-CASVDTVMFCLSKGLG-APVG-SILAGPEEF  282 (285)
Q Consensus       209 ~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~--~~-~~~~dv~~~s~sK~l~-~p~g-g~~~~~~~~  282 (285)
                      ++++++|++ |.++|   +++|+++|++||+++|+||+|+ +..  .+ ..+.|+++.|+||+++ ++.+ |+++.++++
T Consensus       170 ~~~~~~npt-G~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~~  245 (416)
T 1qz9_A          170 MLTHVNYKT-GYMHD---MQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQL  245 (416)
T ss_dssp             EEESBCTTT-CBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTT
T ss_pred             EEeccccCc-ccccC---HHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCCCCCCeEEEEECHHH
Confidence            999999999 89999   9999999999999999999987 111  11 1357999999999985 4666 788887776


Q ss_pred             cc
Q psy5413         283 IQ  284 (285)
Q Consensus       283 i~  284 (285)
                      ++
T Consensus       246 ~~  247 (416)
T 1qz9_A          246 CD  247 (416)
T ss_dssp             TT
T ss_pred             Hh
Confidence            54

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.84  E-value=3.9e-20  Score=167.33  Aligned_cols=193  Identities=13%  Similarity=0.075  Sum_probs=133.3

Q ss_pred             eeeccCCcCCCcHHHHHHHHhcccCCC--------CccCC----hhHHHHHHHHHhHcCCCcE-EEcCChHHHHHHHHHH
Q psy5413          69 VDIRSDTISKPTMEMKNYMFNCEVGDD--------VYLED----PTCKELQEKAAKLAGKEAA-IFVPSGTMGNLIAIMT  135 (285)
Q Consensus        69 ~~~~~~~~~~~~~~v~~a~~~~~~~~~--------~y~~~----~~~~~l~~~la~~~g~~~~-~~~~~Gs~a~~~al~~  135 (285)
                      ..+.+.++  .+|++.+++.++.....        .|...    .....+++.+++++|.+.. +++++|++|++.++++
T Consensus        34 ~~~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~  111 (420)
T 3gbx_A           34 ELIASENY--TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTA  111 (420)
T ss_dssp             ECCTTCCC--CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHH
T ss_pred             eeeccCCC--CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHH
Confidence            34445554  69999999988763211        11111    2233455788888998776 5578999999999998


Q ss_pred             ccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccC
Q psy5413         136 HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHN  215 (285)
Q Consensus       136 ~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n  215 (285)
                      ++ ++||+|++..++|......+...   .. ...+...+.++.+.++.+|+++|+++++++      ++++|++++|++
T Consensus       112 ~~-~~gd~v~~~~~~~~~~~~~~~~~---~~-~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~~v~~~~~~~  180 (420)
T 3gbx_A          112 LL-QPGDTVLGMNLAQGGHLTHGSPV---NF-SGKLYNIVPYGIDESGKIDYDEMAKLAKEH------KPKMIIGGFSAY  180 (420)
T ss_dssp             HC-CTTCEEEEEEEC---------------C-HHHHSEEEEEEECTTCSCCHHHHHHHHHHH------CCSEEEECCTTC
T ss_pred             hc-CCCCEEEecchhhcceeccchhh---hh-cccceeEEeccCCccCCcCHHHHHHHHHhc------CCeEEEEecCcc
Confidence            87 69999999888876532111110   00 112334455565566779999999999862      589999988887


Q ss_pred             CCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecCc
Q psy5413         216 YCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGPE  280 (285)
Q Consensus       216 ~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~  280 (285)
                      +   ...+   +++|+++|++||+++|+||+|. +..      ......|+++.|+||+++||.||++++++
T Consensus       181 ~---~~~~---l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gg~~~~~~  246 (420)
T 3gbx_A          181 S---GVVD---WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKG  246 (420)
T ss_dssp             C---SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTTTSSEEEEESSGGGCSCSCEEEEESS
T ss_pred             C---CccC---HHHHHHHHHHcCCEEEEECCcchhceecccCCcccccCCEEEeecccCCCCCCceEEEEcC
Confidence            4   4677   9999999999999999999986 221      12235789999999999888899999877

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.83  E-value=1.3e-20  Score=175.06  Aligned_cols=194  Identities=10%  Similarity=0.066  Sum_probs=141.5

Q ss_pred             cHHHHHHHHhcccC-----CCCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHHHHHHHHccccCCCeEEe
Q psy5413          80 TMEMKNYMFNCEVG-----DDVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGNLIAIMTHCDRRDSEIIV  146 (285)
Q Consensus        80 ~~~v~~a~~~~~~~-----~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~  146 (285)
                      ++.+++++.+.+..     ...|.......++++.++++++        .+.+++++||++++..++.+++..+||.|++
T Consensus       108 p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  187 (500)
T 3tcm_A          108 SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILV  187 (500)
T ss_dssp             CHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEE
T ss_pred             CHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEE
Confidence            44455554443332     3467766777889999988863        3457999999999999999976358999999


Q ss_pred             cCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCH
Q psy5413         147 GDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPM  224 (285)
Q Consensus       147 ~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~  224 (285)
                      +.+.|.......         ...|.+++.++.+++  +.+|+++|+++|++. ..++.++++|++++|+||| |.+++.
T Consensus       188 ~~p~y~~~~~~~---------~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-~~~~~~~k~ivl~~p~NPt-G~~~s~  256 (500)
T 3tcm_A          188 PIPQYPLYSASI---------ALHGGALVPYYLNESTGWGLETSDVKKQLEDA-RSRGINVRALVVINPGNPT-GQVLAE  256 (500)
T ss_dssp             EESCCTHHHHHH---------HHTTCEEEEEECBTTTTSBCCHHHHHHHHHHH-HHTTCEEEEEEEESSCTTT-CCCCCH
T ss_pred             eCCCcHhHHHHH---------HHcCCEEEEEecccccCCCCCHHHHHHHHHHH-HhcCCCceEEEEECCCCCC-cccCCH
Confidence            988876544322         234788888886543  479999999999762 1123368999999999999 999999


Q ss_pred             HHHHHHHHHHHHcCCeEEEeCccCChh-----------hh-------cccCC-eEEEeccccc-C--cceeEEeec---C
Q psy5413         225 QWLRELKARCQEHNIPVHMDGARLPLA-----------EV-------CASVD-TVMFCLSKGL-G--APVGSILAG---P  279 (285)
Q Consensus       225 ~~l~~i~~la~~~gi~li~Dea~~~~~-----------~~-------~~~~d-v~~~s~sK~l-~--~p~gg~~~~---~  279 (285)
                      +++++|+++|++||+++|+||+|..+.           .+       ....+ +++.|+||++ |  |.++|+++.   +
T Consensus       257 ~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~  336 (500)
T 3tcm_A          257 ENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFS  336 (500)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCC
T ss_pred             HHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCC
Confidence            999999999999999999999987211           01       11122 3378999998 3  467777765   6


Q ss_pred             ccccc
Q psy5413         280 EEFIQ  284 (285)
Q Consensus       280 ~~~i~  284 (285)
                      +++++
T Consensus       337 ~~~~~  341 (500)
T 3tcm_A          337 APVRE  341 (500)
T ss_dssp             TTHHH
T ss_pred             HHHHH
Confidence            66653

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.83  E-value=1e-19  Score=168.39  Aligned_cols=200  Identities=14%  Similarity=0.101  Sum_probs=141.3

Q ss_pred             eeeeccCCcCCCcHHHHHHHHhcccCCC--------CccCChhHHHHH----HHHHhHcCCCc-----EEEcCChHHHHH
Q psy5413          68 TVDIRSDTISKPTMEMKNYMFNCEVGDD--------VYLEDPTCKELQ----EKAAKLAGKEA-----AIFVPSGTMGNL  130 (285)
Q Consensus        68 ~~~~~~~~~~~~~~~v~~a~~~~~~~~~--------~y~~~~~~~~l~----~~la~~~g~~~-----~~~~~~Gs~a~~  130 (285)
                      .+.|..+. ...++++++++.+.+.+..        .|+..+...+++    +.+++++|.+.     .+++.+|++++.
T Consensus        46 ~i~L~a~e-~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~  124 (483)
T 1rv3_A           46 GLELIASE-NFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANF  124 (483)
T ss_dssp             SEECCTTC-CCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHH
T ss_pred             CeEEEcCC-CCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHH
Confidence            45554333 2368899999988765422        233334444555    88888999873     378888999999


Q ss_pred             HHHHHccccCCCeEEecCCcceeeecccccccccccccccc--eeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEE
Q psy5413         131 IAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGR--VLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       131 ~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                      +++.+++ ++||+|++++..|......+........ ...|  ...+.++.+ +++.+|+++|++++++.      ++++
T Consensus       125 ~~~~all-~pGD~Vl~~~~~~~~~~~~~~~~~~~~v-~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~------~tkl  196 (483)
T 1rv3_A          125 AVYTALV-EPHGRIMGLDLPDGGHLTHGFMTDKKKI-SATSIFFESMAYKVNPDTGYIDYDRLEENARLF------HPKL  196 (483)
T ss_dssp             HHHHHHT-CTTCEEEEECGGGTCCGGGCCBCSSCBC-SHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH------CCSE
T ss_pred             HHHHHhc-CCCCEEEEecCccCcCcchhhhhcccCc-ccccceEEEEECccccCCCcCCHHHHHHHHhhc------CCcE
Confidence            9898876 6999999988777554321100000000 1123  344444434 56789999999999832      7899


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhhh------cccCCeEEEecccccCcceeEEeecCc
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAEV------CASVDTVMFCLSKGLGAPVGSILAGPE  280 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~~------~~~~dv~~~s~sK~l~~p~gg~~~~~~  280 (285)
                      |++ +++|++  .++|   +++|+++|++||++||+|++|. ++...      ..++|+++.|+||+|+||+||+++.++
T Consensus       197 Ii~-~~sn~~--~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~GprgG~i~~~~  270 (483)
T 1rv3_A          197 IIA-GTSCYS--RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRR  270 (483)
T ss_dssp             EEE-CCSSCC--SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSCEEEEEEC
T ss_pred             EEE-eCCcCC--CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCCCCceEEEEcc
Confidence            999 888884  7888   9999999999999999999987 22211      127899999999999999999999887


Q ss_pred             cc
Q psy5413         281 EF  282 (285)
Q Consensus       281 ~~  282 (285)
                      ++
T Consensus       271 ~~  272 (483)
T 1rv3_A          271 GV  272 (483)
T ss_dssp             SB
T ss_pred             hh
Confidence            54

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.83  E-value=4e-20  Score=166.12  Aligned_cols=162  Identities=17%  Similarity=0.167  Sum_probs=129.2

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      +++...++++.++++++.+..+++++|++|+..++++++ ++|++|++..+.|..+.... ...      ...|.+++.+
T Consensus        50 ~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~~~~~~-~~g~~vl~~~~~~~~~~~~~~~~~------~~~g~~~~~~  122 (386)
T 1cs1_A           50 GNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFL-KPGDLLVAPHDCYGGSYRLFDSLA------KRGCYRVLFV  122 (386)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHHH------TTTSCEEEEE
T ss_pred             CCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEecCCcHhHHHHHHHHH------HhcCCEEEEe
Confidence            467789999999999998877888999999999999876 58999999887775432211 111      2347777777


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---hhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---EVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---~~~  254 (285)
                      +..     |++++++++++       ++++|++++++|++ |.+++   +++|+++|++||+++|+||+|+...   ...
T Consensus       123 ~~~-----d~~~l~~~i~~-------~~~~v~~~~~~npt-G~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~  186 (386)
T 1cs1_A          123 DQG-----DEQALRAALAE-------KPKLVLVESPSNPL-LRVVD---IAKICHLAREVGAVSVVDNTFLSPALQNPLA  186 (386)
T ss_dssp             CTT-----CHHHHHHHHHT-------CCSEEEEECSCTTT-CCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCCGGG
T ss_pred             CCC-----CHHHHHHhhcc-------CCcEEEEeCCCCCC-CcccC---HHHHHHHHHHcCCEEEEECCCcccccCCccc
Confidence            752     89999999987       78999999999999 89998   9999999999999999999998322   223


Q ss_pred             ccCCeEEEecccccCcc---eeEEeecCc-ccc
Q psy5413         255 ASVDTVMFCLSKGLGAP---VGSILAGPE-EFI  283 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~p---~gg~~~~~~-~~i  283 (285)
                      .+.|+++.|+||++++|   +||+++.++ +++
T Consensus       187 ~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~  219 (386)
T 1cs1_A          187 LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVV  219 (386)
T ss_dssp             GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHH
T ss_pred             cCceEEEEcCcccccCCCCceeEEEEeCcHHHH
Confidence            46789999999999874   347777664 554

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.83  E-value=5.2e-20  Score=165.91  Aligned_cols=199  Identities=13%  Similarity=0.113  Sum_probs=141.5

Q ss_pred             CeeeeeccCCcCCCcHHHHHHHHhcccC--CCCcc------CChhHHHHH----HHHHhHcCCCcE-EEcCChHHHHHHH
Q psy5413          66 IRTVDIRSDTISKPTMEMKNYMFNCEVG--DDVYL------EDPTCKELQ----EKAAKLAGKEAA-IFVPSGTMGNLIA  132 (285)
Q Consensus        66 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~--~~~y~------~~~~~~~l~----~~la~~~g~~~~-~~~~~Gs~a~~~a  132 (285)
                      +++++|..+.... +|++.+++.++...  ...|.      ..+....++    +.+++++|.+.. +++++|++|+..+
T Consensus        23 ~~~i~~~~~~~~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a~~~~  101 (407)
T 2dkj_A           23 REGLELIASENFV-SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQANMAV  101 (407)
T ss_dssp             HTSEECCTTCCCC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHH
T ss_pred             hcceeeccCCCCC-CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHHHHHHH
Confidence            3567777665444 89999999887642  22232      223222333    488999998876 7788999999999


Q ss_pred             HHHccccCCCeEEecCCcceeeecccccccccccccccce--eeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413         133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRV--LMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVC  209 (285)
Q Consensus       133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~  209 (285)
                      +++++ ++|++|+++.++|..........      ...|.  ..+.++.+ .++.+|++++++++++.      ++++|+
T Consensus       102 ~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~~v~  168 (407)
T 2dkj_A          102 YMALM-EPGDTLMGMDLAAGGHLTHGSRV------NFSGKLYKVVSYGVRPDTELIDLEEVRRLALEH------RPKVIV  168 (407)
T ss_dssp             HHHHC-CTTCEEEEECGGGTCCGGGTCTT------SHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHH------CCSEEE
T ss_pred             HHHhc-CCCCEEEEecccccCccchHHHH------HhcCceEEEEecCCCcccCccCHHHHHHHHhhc------CCeEEE
Confidence            99986 68999999888876552111111      12244  33344333 35678999999999742      678999


Q ss_pred             EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC-hhhh------cccCCeEEEecccccCcceeEEeecC-cc
Q psy5413         210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP-LAEV------CASVDTVMFCLSKGLGAPVGSILAGP-EE  281 (285)
Q Consensus       210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~-~~~~------~~~~dv~~~s~sK~l~~p~gg~~~~~-~~  281 (285)
                      +++|+|+   .+.+   +++|+++|++||+++|+||+|+. ....      ....|+++.|+||+++|+++|+++++ ++
T Consensus       169 ~~~p~~~---~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~G~~~~~~~~  242 (407)
T 2dkj_A          169 AGASAYP---RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLILSNDPE  242 (407)
T ss_dssp             ECCSSCC---SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSCEEEEESCHH
T ss_pred             EeccccC---CCCC---HHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCceEEEECCHH
Confidence            9778874   6677   99999999999999999999883 3211      12478889999999998888999887 67


Q ss_pred             ccc
Q psy5413         282 FIQ  284 (285)
Q Consensus       282 ~i~  284 (285)
                      +++
T Consensus       243 ~~~  245 (407)
T 2dkj_A          243 LGK  245 (407)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.83  E-value=6.1e-20  Score=165.43  Aligned_cols=197  Identities=12%  Similarity=0.021  Sum_probs=143.4

Q ss_pred             eeeeeccCCc-CC-----CcHHHHHHHHhccc--CCCCccCChhHHHHHHHHHhHcC--------CCcEEE--cCChHHH
Q psy5413          67 RTVDIRSDTI-SK-----PTMEMKNYMFNCEV--GDDVYLEDPTCKELQEKAAKLAG--------KEAAIF--VPSGTMG  128 (285)
Q Consensus        67 ~~~~~~~~~~-~~-----~~~~v~~a~~~~~~--~~~~y~~~~~~~~l~~~la~~~g--------~~~~~~--~~~Gs~a  128 (285)
                      .+++|..+.+ ..     ..+++.+++.+...  +...|.......++++.++++++        .+.+++  ++||++|
T Consensus        29 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~a  108 (401)
T 7aat_A           29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGS  108 (401)
T ss_dssp             TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred             CceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHH
Confidence            4577777665 22     23467887776544  34567655668899999999875        344555  8999999


Q ss_pred             HHHHHHHcc--ccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCc
Q psy5413         129 NLIAIMTHC--DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCAS  204 (285)
Q Consensus       129 ~~~al~~~~--~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~  204 (285)
                      +..+++++.  .++||+|+++.++|.......         ...|.+++.++..  .++.+|++++++.+++    ..++
T Consensus       109 l~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~---------~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~----~~~~  175 (401)
T 7aat_A          109 LRVGANFLQRFFKFSRDVYLPKPSWGNHTPIF---------RDAGLQLQAYRYYDPKTCSLDFTGAMEDISK----IPEK  175 (401)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEEESCCTTHHHHH---------HHTTCEEEEEECEETTTTEECHHHHHHHHTT----SCTT
T ss_pred             HHHHHHHHHHhccCCCEEEEcCCCchhHHHHH---------HHcCCeeEeeeeeccccCccCHHHHHHHHHh----CCCC
Confidence            998887653  258999999888775543322         2347788888753  3567899988888865    2337


Q ss_pred             eEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh---------h----ccc-CCeEEEecccccCc
Q psy5413         205 TSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE---------V----CAS-VDTVMFCLSKGLGA  270 (285)
Q Consensus       205 ~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~---------~----~~~-~dv~~~s~sK~l~~  270 (285)
                      +++|++++|+||| |.+++.+++++|+++|++||+++|+||+|..+..         +    ... ..+++.|+||.++.
T Consensus       176 ~~~v~i~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~  254 (401)
T 7aat_A          176 SIILLHACAHNPT-GVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGL  254 (401)
T ss_dssp             CEEEEESSSCTTT-CCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCC
T ss_pred             cEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCccccc
Confidence            8999999999999 8999999999999999999999999999872210         1    112 23559999999875


Q ss_pred             --ceeEEee
Q psy5413         271 --PVGSILA  277 (285)
Q Consensus       271 --p~gg~~~  277 (285)
                        .+.|+++
T Consensus       255 ~G~RiG~l~  263 (401)
T 7aat_A          255 YGERAGAFT  263 (401)
T ss_dssp             GGGCEEEEE
T ss_pred             ccCceEEEE
Confidence              4455644

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.83  E-value=4.9e-20  Score=167.30  Aligned_cols=216  Identities=13%  Similarity=0.057  Sum_probs=140.9

Q ss_pred             CCeeeeeccCC----cCCCcHHHHHHHHhcccCC----CCccCChhHHHHHHHHHhHc-C-C-CcEEEcCChHHHHHHHH
Q psy5413          65 NIRTVDIRSDT----ISKPTMEMKNYMFNCEVGD----DVYLEDPTCKELQEKAAKLA-G-K-EAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        65 ~~~~~~~~~~~----~~~~~~~v~~a~~~~~~~~----~~y~~~~~~~~l~~~la~~~-g-~-~~~~~~~~Gs~a~~~al  133 (285)
                      |+.++||.++.    .++++|++.+++.++....    ..|...+...+|++.|++++ + . +.+++++||++|++.++
T Consensus        40 g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~  119 (426)
T 1sff_A           40 GREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAV  119 (426)
T ss_dssp             CCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHH
T ss_pred             CCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHH
Confidence            56788887654    3447899999998876531    13556778999999999999 5 4 55799999999999999


Q ss_pred             H---HccccCCCeEEec-CCcceeeeccccccc-ccccccccce---eeeeeecCC-----CCCCCHHHHHHHhcccccc
Q psy5413         134 M---THCDRRDSEIIVG-DCSHIMLWEQGGASQ-TSVYSQIGRV---LMRGVTNQK-----DGTFDLDEMEAKFSTADNI  200 (285)
Q Consensus       134 ~---~~~~~~g~~vi~~-~~~h~~~~~~~~~~~-~~~~~~~~g~---~~~~~~~~~-----~~~~d~~~l~~~i~~~~~~  200 (285)
                      +   .+. +++ +|++. ..+|.+......... ...|...++.   .++.++.+.     ++.+|+++|++++++..  
T Consensus       120 ~~a~~~~-~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~--  195 (426)
T 1sff_A          120 KIARAAT-KRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDA--  195 (426)
T ss_dssp             HHHHHHH-TCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHhh-CCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhcc--
Confidence            8   433 455 56664 556655432211110 0011111121   133444422     12368999999986310  


Q ss_pred             cCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----hcccCC--eEEEecccccCc-ce
Q psy5413         201 HCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE-----VCASVD--TVMFCLSKGLGA-PV  272 (285)
Q Consensus       201 ~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----~~~~~d--v~~~s~sK~l~~-p~  272 (285)
                      +..++++|++++.++.+|..+++.+++++|+++|++||++||+||+|+++..     ..+..+  .-+.|+||++++ .+
T Consensus       196 ~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~Glr  275 (426)
T 1sff_A          196 APEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFP  275 (426)
T ss_dssp             CGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTSSC
T ss_pred             CCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEEEEcccccCCCc
Confidence            1127899999874444733889999999999999999999999999984321     111111  125588999986 33


Q ss_pred             eEEeecCccccc
Q psy5413         273 GSILAGPEEFIQ  284 (285)
Q Consensus       273 gg~~~~~~~~i~  284 (285)
                      .|++++++++++
T Consensus       276 iG~~~~~~~~~~  287 (426)
T 1sff_A          276 LAGVTGRAEVMD  287 (426)
T ss_dssp             CEEEEEEHHHHT
T ss_pred             eEEEEEcHHHHh
Confidence            377777777654

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.83  E-value=7.6e-20  Score=164.73  Aligned_cols=197  Identities=17%  Similarity=0.177  Sum_probs=141.0

Q ss_pred             eeeeeccCCcCCCcHHHHHHHHhccc-CC-CC------ccCChhHHHHH----HHHHhHcCCCcE-EEcCChHHHHHHHH
Q psy5413          67 RTVDIRSDTISKPTMEMKNYMFNCEV-GD-DV------YLEDPTCKELQ----EKAAKLAGKEAA-IFVPSGTMGNLIAI  133 (285)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~a~~~~~~-~~-~~------y~~~~~~~~l~----~~la~~~g~~~~-~~~~~Gs~a~~~al  133 (285)
                      .++++.+.++.  +|++++++.++.. .. ..      |...+...+++    +.+++++|.+.. +++++|++|+..++
T Consensus        25 ~~~~~~~~~~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~~~a~  102 (405)
T 2vi8_A           25 KIELIASENFV--SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVY  102 (405)
T ss_dssp             SEECCTTCCCC--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHH
T ss_pred             ceeeccCcccC--CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHHHHHHH
Confidence            46777777665  8999999988764 21 11      22234455555    699999998876 55788999999999


Q ss_pred             HHccccCCCeEEecCCcceeeecccccccccccccccce--eeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413         134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRV--LMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCV  210 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i  210 (285)
                      ++++ ++|++|+++.++|..........      ...|.  +++.++.+ .++.+|++++++++++.      ++++|++
T Consensus       103 ~~~~-~~gd~Vl~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~~v~~  169 (405)
T 2vi8_A          103 FTVL-EHGDTVLGMNLSHGGHLTHGSPV------NFSGVQYNFVAYGVDPETHVIDYDDVREKARLH------RPKLIVA  169 (405)
T ss_dssp             HHHC-CTTCEEEEECGGGTCCTTTTCTT------SHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH------CCSEEEE
T ss_pred             HHhc-CCCCEEEEecccccchhcccchh------hhccceeEEEecccccccCCcCHHHHHHHHHhc------CCeEEEE
Confidence            9986 68999999988886654211110      11133  56666653 45678999999999752      5678887


Q ss_pred             ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh--hhc----ccCCeEEEecccccCcceeEEeecCcccc
Q psy5413         211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA--EVC----ASVDTVMFCLSKGLGAPVGSILAGPEEFI  283 (285)
Q Consensus       211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~--~~~----~~~dv~~~s~sK~l~~p~gg~~~~~~~~i  283 (285)
                      ++ ++.  |...+   +++|+++|++||+++|+||+|+ +..  ...    ...|+++.|+||++++|.||+++++++++
T Consensus       170 ~~-~~~--~~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~gG~~~~~~~~~  243 (405)
T 2vi8_A          170 AA-AAY--PRIID---FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQEQFA  243 (405)
T ss_dssp             CC-SSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSCEEEEECHHHH
T ss_pred             eC-CCC--CccCC---HHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCCeEEEEcHHHH
Confidence            43 443  56667   9999999999999999999988 111  111    25788899999999977789998887765


Q ss_pred             c
Q psy5413         284 Q  284 (285)
Q Consensus       284 ~  284 (285)
                      +
T Consensus       244 ~  244 (405)
T 2vi8_A          244 K  244 (405)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.83  E-value=6.6e-20  Score=170.96  Aligned_cols=173  Identities=22%  Similarity=0.269  Sum_probs=128.6

Q ss_pred             CccCChhH----HHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccc-------cCCC------eEEecCCcceeeec
Q psy5413          96 VYLEDPTC----KELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCD-------RRDS------EIIVGDCSHIMLWE  156 (285)
Q Consensus        96 ~y~~~~~~----~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~-------~~g~------~vi~~~~~h~~~~~  156 (285)
                      .|...+..    .++++.+++++|.+  .++|++|||+|+..++.++..       .+|+      .|++++..|.++..
T Consensus       139 ~~~~s~~~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~  218 (515)
T 2jis_A          139 TYEIAPVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQK  218 (515)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHH
T ss_pred             chhhchHHHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHH
Confidence            45555554    45556688888875  569999999999999998742       2464      68888888877665


Q ss_pred             ccccccccccccccce-eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHH
Q psy5413         157 QGGASQTSVYSQIGRV-LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQ  235 (285)
Q Consensus       157 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~  235 (285)
                      .....      . .|. +++.+|.++++.+|+++|+++|+++. ..+.++++|++++++|++ |.+.|   +++|+++|+
T Consensus       219 ~~~~~------g-~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~-~~g~~~~~Vv~~~~~n~t-G~i~~---l~~I~~la~  286 (515)
T 2jis_A          219 GAAFL------G-LGTDSVRVVKADERGKMVPEDLERQIGMAE-AEGAVPFLVSATSGTTVL-GAFDP---LEAIADVCQ  286 (515)
T ss_dssp             HHHHT------T-SCGGGEEEECBCTTSCBCHHHHHHHHHHHH-HTTCEEEEEEEEBSCTTT-CCBCC---HHHHHHHHH
T ss_pred             HHHHc------C-CCCCcEEEEecCCCCcCCHHHHHHHHHHHH-hCCCCcEEEEEeCCCCCC-CCccC---HHHHHHHHH
Confidence            33332      1 122 78888887788899999999997621 123358999999999999 89999   999999999


Q ss_pred             HcCCeEEEeCccCChhh--------h--cccCCeEEEecccccCccee-EEe-ecCc
Q psy5413         236 EHNIPVHMDGARLPLAE--------V--CASVDTVMFCLSKGLGAPVG-SIL-AGPE  280 (285)
Q Consensus       236 ~~gi~li~Dea~~~~~~--------~--~~~~dv~~~s~sK~l~~p~g-g~~-~~~~  280 (285)
                      +||+|+|+|++|+....        +  .+++|++++++|||+++|.| |++ +.++
T Consensus       287 ~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~  343 (515)
T 2jis_A          287 RHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDT  343 (515)
T ss_dssp             HHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCC
T ss_pred             HcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeCh
Confidence            99999999999882211        1  24789999999999988642 444 4444

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.83  E-value=4.1e-20  Score=170.65  Aligned_cols=195  Identities=13%  Similarity=0.105  Sum_probs=126.4

Q ss_pred             ccCCcCCCcHHHHHHHHhcccCCC--------CccCChhHHHHH----HHHHhHcCCCc----E-EEcCChHHHHHHHHH
Q psy5413          72 RSDTISKPTMEMKNYMFNCEVGDD--------VYLEDPTCKELQ----EKAAKLAGKEA----A-IFVPSGTMGNLIAIM  134 (285)
Q Consensus        72 ~~~~~~~~~~~v~~a~~~~~~~~~--------~y~~~~~~~~l~----~~la~~~g~~~----~-~~~~~Gs~a~~~al~  134 (285)
                      .++++  .+|+|++|+.+.+.+..        .|+..+...+++    +.+++++|.+.    + +++.||++|+..++.
T Consensus        61 as~n~--~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~  138 (490)
T 2a7v_A           61 ASENF--CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYT  138 (490)
T ss_dssp             TTCCC--CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHH
T ss_pred             CCCCC--CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHH
Confidence            34444  69999999988765322        233334344555    89999999986    3 567799999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccce--eeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRV--LMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVE  211 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~  211 (285)
                      +++ ++||+|++.+..|......+........ ...|.  .++.++.+ +++.+|+++|++++.++      ++++|+++
T Consensus       139 al~-~pGD~Vl~~~~~h~g~l~h~~~~~~~~i-~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~------~~klIi~~  210 (490)
T 2a7v_A          139 ALL-QPHDRIMGLDLPDGGHLTHGYMSDVKRI-SATSIFFESMPYKLNPKTGLIDYNQLALTARLF------RPRLIIAG  210 (490)
T ss_dssp             HHC-CSCEECCC--------------------------------CCBCTTTCSBCHHHHHHHHHHH------CCSEEEEC
T ss_pred             HHc-CCCCEecccCccccccccchhhhcchhH-HHcCCeEEEEecccccccCCcCHHHHHHHHhhc------CCcEEEEc
Confidence            987 6999999887766432110000000000 11233  33344433 46789999999999752      57888887


Q ss_pred             cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecCccc
Q psy5413         212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGPEEF  282 (285)
Q Consensus       212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~  282 (285)
                      .+++   +...|   +++|+++|++||++||+|++|. ++.      ....++|++++|+||+|+||.||++++++++
T Consensus       211 ~s~~---~~~~d---l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~~aDiv~~S~hK~l~Gp~GG~i~~~~~~  282 (490)
T 2a7v_A          211 TSAY---ARLID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKGV  282 (490)
T ss_dssp             CSSC---CSCCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSCSCEEEEEECSE
T ss_pred             CCCC---CCccc---HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCCCCCEEEECCcccCccccchheeeccch
Confidence            7776   45677   9999999999999999999986 211      1124789999999999999999999987753

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.83  E-value=1.8e-19  Score=163.20  Aligned_cols=183  Identities=13%  Similarity=0.078  Sum_probs=125.5

Q ss_pred             CcHHHHHHHHhcccCCC--------CccCC---hhHHHH-HHHHHhHcCCCcE-EEcCChHHHHHHHHHHccccCCCeEE
Q psy5413          79 PTMEMKNYMFNCEVGDD--------VYLED---PTCKEL-QEKAAKLAGKEAA-IFVPSGTMGNLIAIMTHCDRRDSEII  145 (285)
Q Consensus        79 ~~~~v~~a~~~~~~~~~--------~y~~~---~~~~~l-~~~la~~~g~~~~-~~~~~Gs~a~~~al~~~~~~~g~~vi  145 (285)
                      .+|++.+++.++.....        .|...   +...++ ++.+++++|.+.. +++++|++|++.++++++ ++||+|+
T Consensus        44 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~~-~~gd~Vi  122 (425)
T 3ecd_A           44 VSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQPHSGAQANGAVMLALA-KPGDTVL  122 (425)
T ss_dssp             CCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC-CTTCEEE
T ss_pred             CCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeecCchHHHHHHHHHHcc-CCCCEEE
Confidence            39999999998764211        11111   123444 4778888999887 559999999999999886 6899999


Q ss_pred             ecCCcceeeecccccccccccccccce--eeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413         146 VGDCSHIMLWEQGGASQTSVYSQIGRV--LMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL  222 (285)
Q Consensus       146 ~~~~~h~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~  222 (285)
                      +..++|......+...      ...+.  +.+.++.+ +++.+|+++|++++++.      ++++|++++|+|   |...
T Consensus       123 ~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~~v~~~~~~~---~~~~  187 (425)
T 3ecd_A          123 GMSLDAGGHLTHGAKP------ALSGKWFNALQYGVSRDTMLIDYDQVEALAQQH------KPSLIIAGFSAY---PRKL  187 (425)
T ss_dssp             EECC------------------------CEEEEECCCTTTSSCCHHHHHHHHHHH------CCSEEEEECSCC---CSCC
T ss_pred             Ecccccccceecchhh------hhcccceeeeecCCCcccCccCHHHHHHHHhhc------CCcEEEEccccC---CCcC
Confidence            9888875521111111      11133  44455543 34678999999999742      689999998887   4566


Q ss_pred             CHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecCc
Q psy5413         223 PMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGPE  280 (285)
Q Consensus       223 ~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~  280 (285)
                      +   +++|+++|++||++||+||+|. +..      ......|+++.|+||+++||+||++++++
T Consensus       188 ~---l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~g~~~~~~  249 (425)
T 3ecd_A          188 D---FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFVLTND  249 (425)
T ss_dssp             C---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCCCSCEEEEESC
T ss_pred             C---HHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcccCCCCcEEEEeCC
Confidence            7   8999999999999999999965 211      12234789999999999888899998874

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.82  E-value=4.6e-20  Score=166.25  Aligned_cols=182  Identities=13%  Similarity=0.127  Sum_probs=138.4

Q ss_pred             cHHHHHHHHhcccCCCCccC--ChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHc-cccCCCeEEecCCcceeeec
Q psy5413          80 TMEMKNYMFNCEVGDDVYLE--DPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTH-CDRRDSEIIVGDCSHIMLWE  156 (285)
Q Consensus        80 ~~~v~~a~~~~~~~~~~y~~--~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~-~~~~g~~vi~~~~~h~~~~~  156 (285)
                      .+++.+++.+....  .|..  .+...++++.+++++|.+.+++++||++|+..+++++ + ++|++|+++.+.|.....
T Consensus        11 ~~~v~~a~~~~~~~--~~~~~~g~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~-~~gd~Vl~~~~~~~~~~~   87 (394)
T 1o69_A           11 GGNELKYIEEVFKS--NYIAPLGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGV-KQDDIVLASSFTFIASVA   87 (394)
T ss_dssp             -CCHHHHHHHHHHH--TTTSCTTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTC-CTTCEEEEESSSCGGGTH
T ss_pred             CHHHHHHHHHHHHc--CCccCCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCC-CCCCEEEECCCccHHHHH
Confidence            45677777665542  2332  4669999999999999998999999999999999998 5 689999999888866543


Q ss_pred             ccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH
Q psy5413         157 QGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE  236 (285)
Q Consensus       157 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~  236 (285)
                      ..         ...|.+++.++.++++.+|++++++++++.    .+++++|++++++    |...+   +++|.++|++
T Consensus        88 ~~---------~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~----~~~~~~v~~~~~~----G~~~~---l~~i~~l~~~  147 (394)
T 1o69_A           88 PI---------CYLKAKPVFIDCDETYNIDVDLLKLAIKEC----EKKPKALILTHLY----GNAAK---MDEIVEICKE  147 (394)
T ss_dssp             HH---------HHTTCEEEEECBCTTSSBCHHHHHHHHHHC----SSCCCEEEEECGG----GCCCC---HHHHHHHHHH
T ss_pred             HH---------HHcCCEEEEEEeCCCCCcCHHHHHHHHhcc----cCCceEEEEECCC----CChhh---HHHHHHHHHH
Confidence            22         234888888887667789999999999752    1257899998754    77777   9999999999


Q ss_pred             cCCeEEEeCccC-Chhhhc------ccCCeEEEecccccCcceeEEeecC-ccccc
Q psy5413         237 HNIPVHMDGARL-PLAEVC------ASVDTVMFCLSKGLGAPVGSILAGP-EEFIQ  284 (285)
Q Consensus       237 ~gi~li~Dea~~-~~~~~~------~~~dv~~~s~sK~l~~p~gg~~~~~-~~~i~  284 (285)
                      +|+++|+||+|+ +.....      ..+|+++++.+|++++..+|+++.+ +++++
T Consensus       148 ~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~  203 (394)
T 1o69_A          148 NDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKIE  203 (394)
T ss_dssp             TTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHH
T ss_pred             cCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCHHHHH
Confidence            999999999998 432211      1334445566899988778888884 66543

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.82  E-value=2.6e-20  Score=163.63  Aligned_cols=156  Identities=17%  Similarity=0.132  Sum_probs=125.1

Q ss_pred             HHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeeeecCCCC
Q psy5413         105 ELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGVTNQKDG  183 (285)
Q Consensus       105 ~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~  183 (285)
                      ++++.+++++|.+..+++++|++|+..+++++. ++|++|+++.+.|..+.... .+.      ...|.+++.++.    
T Consensus         2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~-~~g~~v~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~----   70 (331)
T 1pff_A            2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFL-KAGDHLISDDCLYGCTHALFEHQL------RKFGVEVDFIDM----   70 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHH------HHTTCEEEEECT----
T ss_pred             hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc-CCCCEEEEcCCCcchHHHHHHHHH------HhcCCEEEEeCC----
Confidence            689999999999888999999999999999876 58999999888776543211 111      234777777765    


Q ss_pred             CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH-cCCeEEEeCccCChh---hhcccCCe
Q psy5413         184 TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE-HNIPVHMDGARLPLA---EVCASVDT  259 (285)
Q Consensus       184 ~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~-~gi~li~Dea~~~~~---~~~~~~dv  259 (285)
                       .|++++++++++       ++++|++++++||+ |.++|   +++|.++|++ ||+++|+||+|+...   ....+.|+
T Consensus        71 -~d~~~l~~~i~~-------~~~~v~~~~~~npt-G~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~  138 (331)
T 1pff_A           71 -AVPGNIEKHLKP-------NTRIVYFETPANPT-LKVID---IEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDI  138 (331)
T ss_dssp             -TSTTHHHHTCCT-------TEEEEEEESSCTTT-CCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSE
T ss_pred             -CCHHHHHHhhcC-------CCeEEEEECCCCCc-CcccC---HHHHHHHHhhhcCCEEEEECCCcccccCChhhcCCcE
Confidence             378899999976       79999999999999 89999   9999999999 999999999998211   22346789


Q ss_pred             EEEecccccCcce---eEEeecCc-ccc
Q psy5413         260 VMFCLSKGLGAPV---GSILAGPE-EFI  283 (285)
Q Consensus       260 ~~~s~sK~l~~p~---gg~~~~~~-~~i  283 (285)
                      ++.|+||++++|.   +|+++.++ +++
T Consensus       139 ~~~s~~K~~~~~~~r~~G~~~~~~~~~~  166 (331)
T 1pff_A          139 VVHSATKYINGHTDVVAGLVCSRADIIA  166 (331)
T ss_dssp             EEEETTTTTSSSSSCCCEEEEECHHHHH
T ss_pred             EEEECccccCCCCCceEEEEEeCcHHHH
Confidence            9999999998742   67887776 654

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.82  E-value=1.2e-19  Score=164.26  Aligned_cols=198  Identities=15%  Similarity=0.047  Sum_probs=143.3

Q ss_pred             CCeeeeeccCCc---C---CCcHHHHHHHHh-cccC--CCCccCChhHHHHHHHHHhHc-C-------CCcEEE--cCCh
Q psy5413          65 NIRTVDIRSDTI---S---KPTMEMKNYMFN-CEVG--DDVYLEDPTCKELQEKAAKLA-G-------KEAAIF--VPSG  125 (285)
Q Consensus        65 ~~~~~~~~~~~~---~---~~~~~v~~a~~~-~~~~--~~~y~~~~~~~~l~~~la~~~-g-------~~~~~~--~~~G  125 (285)
                      ++.+++|..+.+   .   .+.+.+.+++.+ ....  ...|+......++++.+++++ +       .+.+++  +++|
T Consensus        28 ~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~  107 (412)
T 1yaa_A           28 RATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSG  107 (412)
T ss_dssp             CSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred             CCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccch
Confidence            346788887765   2   356899999988 6542  235665666889999999997 3       356788  9999


Q ss_pred             HHHHHHHHH--HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeec-C-CCCCCCHHHHHHHhccccccc
Q psy5413         126 TMGNLIAIM--THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN-Q-KDGTFDLDEMEAKFSTADNIH  201 (285)
Q Consensus       126 s~a~~~al~--~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~-~~~~~d~~~l~~~i~~~~~~~  201 (285)
                      ++|++.+++  ..+ .+|++|+++.++|......   .      ...|.+++.++. + +++.+|++++++++++.    
T Consensus       108 ~~a~~~~~~~~~~~-~~gd~Vl~~~p~~~~~~~~---~------~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~----  173 (412)
T 1yaa_A          108 TGALHISAKFFSKF-FPDKLVYLSKPTWANHMAI---F------ENQGLKTATYPYWANETKSLDLNGFLNAIQKA----  173 (412)
T ss_dssp             HHHHHHHHHHHHHH-CTTCCEEEEESCCTTHHHH---H------HTTTCCEEEEECEETTTTEECHHHHHHHHHHS----
T ss_pred             HhHHHHHHHHHHHh-CCCCEEEEeCCCCccHHHH---H------HHcCceEEEEeeecCCCCccCHHHHHHHHHhC----
Confidence            999998843  333 4899999987776543321   1      234778888876 3 35668999999999762    


Q ss_pred             CCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-------h--hh---c-ccC----CeEEEec
Q psy5413         202 CASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-------A--EV---C-ASV----DTVMFCL  264 (285)
Q Consensus       202 ~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-------~--~~---~-~~~----dv~~~s~  264 (285)
                      ...++++++++|+||| |.+++.+++++|+++|++||+++|+||+|..+       .  .+   . .+.    ++++.|+
T Consensus       174 ~~~~~~~~~~~p~nPt-G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  252 (412)
T 1yaa_A          174 PEGSIFVLHSCAHNPT-GLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSF  252 (412)
T ss_dssp             CTTCEEEEECSSCTTT-CCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEEC
T ss_pred             CCCCEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEecc
Confidence            1135666669999999 89999999999999999999999999998622       1  11   1 233    2458999


Q ss_pred             ccccCc--ceeEEee
Q psy5413         265 SKGLGA--PVGSILA  277 (285)
Q Consensus       265 sK~l~~--p~gg~~~  277 (285)
                      ||.++.  .+.|+++
T Consensus       253 sK~~~~~GlriG~~~  267 (412)
T 1yaa_A          253 AKNAGMYGERVGCFH  267 (412)
T ss_dssp             TTTSCCGGGCEEEEE
T ss_pred             CCCCCCcCCcceEEE
Confidence            999875  3446665

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.82  E-value=1.4e-19  Score=168.26  Aligned_cols=176  Identities=18%  Similarity=0.235  Sum_probs=130.4

Q ss_pred             CccCChhHHHHHHH----HHhHcCCC----cEEEcCChHHHHHHHHHHccc-------cCC-----C-eEEecCCcceee
Q psy5413          96 VYLEDPTCKELQEK----AAKLAGKE----AAIFVPSGTMGNLIAIMTHCD-------RRD-----S-EIIVGDCSHIML  154 (285)
Q Consensus        96 ~y~~~~~~~~l~~~----la~~~g~~----~~~~~~~Gs~a~~~al~~~~~-------~~g-----~-~vi~~~~~h~~~  154 (285)
                      .|...+...++++.    +++++|.+    .++|++|||+|+..++.++..       ++|     + .|++++..|.++
T Consensus       123 ~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~  202 (504)
T 2okj_A          123 TYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSI  202 (504)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHH
T ss_pred             chhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHH
Confidence            45555665555555    47778865    469999999999999998753       245     5 688888889877


Q ss_pred             ecccccccccccccccce-eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHH
Q psy5413         155 WEQGGASQTSVYSQIGRV-LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR  233 (285)
Q Consensus       155 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~l  233 (285)
                      .......      . .|. +++.+|.++++.+|+++|+++|+++. ..+.++++|+++.++|++ |.+.|   +++|+++
T Consensus       203 ~~~~~~~------g-~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~-~~g~~~~~V~~~~~~~~t-G~i~~---l~~I~~l  270 (504)
T 2okj_A          203 KKAGAAL------G-FGTDNVILIKCNERGKIIPADFEAKILEAK-QKGYVPFYVNATAGTTVY-GAFDP---IQEIADI  270 (504)
T ss_dssp             HHHHHHT------T-SCGGGEEEECBCTTSCBCHHHHHHHHHHHH-HTTCEEEEEEECBSCSSS-CCBCC---HHHHHHH
T ss_pred             HHHHHHc------C-CCcccEEEEecCCCCCCCHHHHHHHHHHHH-HCCCCceEEEEeCCCCCC-CCcCC---HHHHHHH
Confidence            6543333      1 133 77888887788899999999997621 123358999999999999 89999   9999999


Q ss_pred             HHHcCCeEEEeCccCChh--------hh--cccCCeEEEecccccCcce-eEEe-ecCcccc
Q psy5413         234 CQEHNIPVHMDGARLPLA--------EV--CASVDTVMFCLSKGLGAPV-GSIL-AGPEEFI  283 (285)
Q Consensus       234 a~~~gi~li~Dea~~~~~--------~~--~~~~dv~~~s~sK~l~~p~-gg~~-~~~~~~i  283 (285)
                      |++||+|+|+|++|++..        .+  .+++|++++++|||+++|. .|++ +.+++++
T Consensus       271 a~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~  332 (504)
T 2okj_A          271 CEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGIL  332 (504)
T ss_dssp             HHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHH
T ss_pred             HHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHH
Confidence            999999999999988322        11  2478999999999999743 3444 4544443

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.82  E-value=5.6e-20  Score=165.87  Aligned_cols=161  Identities=14%  Similarity=0.118  Sum_probs=127.9

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .++...++++.+++++|.+..+++++|++|+..+++ ++ ++||+|+++.+.|..+.... ...      ...|.+++.+
T Consensus        53 ~~~~~~~lr~~la~~~g~~~~i~~~sGt~a~~~al~-~~-~~gd~Vi~~~~~y~~~~~~~~~~~------~~~G~~v~~v  124 (393)
T 1n8p_A           53 QNPNRENLERAVAALENAQYGLAFSSGSATTATILQ-SL-PQGSHAVSIGDVYGGTHRYFTKVA------NAHGVETSFT  124 (393)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHH-TS-CSSCEEEEESSCCHHHHHHHHHTS------TTTCSCCEEE
T ss_pred             CChhHHHHHHHHHHHhCCCcEEEECChHHHHHHHHH-Hc-CCCCEEEEeCCCchHHHHHHHHHH------HHcCcEEEEe
Confidence            457789999999999999888999999999999999 66 58999998877765332211 011      3457788887


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc----CCeEEEeCccCChh--
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH----NIPVHMDGARLPLA--  251 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~----gi~li~Dea~~~~~--  251 (285)
                      +.+     | ++++++|++       ++++|++++|+|++ |.++|   +++|+++|++|    |+++|+||+|+...  
T Consensus       125 ~~~-----d-~~l~~~i~~-------~t~lv~~~~~~npt-G~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~~  187 (393)
T 1n8p_A          125 NDL-----L-NDLPQLIKE-------NTKLVWIETPTNPT-LKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS  187 (393)
T ss_dssp             SSH-----H-HHHHHHSCS-------SEEEEEECSSCTTT-CCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC
T ss_pred             CCC-----h-HHHHHhccc-------CceEEEEECCCCCc-ceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccccC
Confidence            763     7 899999976       79999999999999 89999   99999999999    99999999998221  


Q ss_pred             -hhcccCCeEEEecccccCcc---eeEEeec-Cccccc
Q psy5413         252 -EVCASVDTVMFCLSKGLGAP---VGSILAG-PEEFIQ  284 (285)
Q Consensus       252 -~~~~~~dv~~~s~sK~l~~p---~gg~~~~-~~~~i~  284 (285)
                       ....+.|+++.|+||+++++   +||+++. ++++++
T Consensus       188 ~~~~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~  225 (393)
T 1n8p_A          188 NPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYE  225 (393)
T ss_dssp             CGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHH
T ss_pred             CHHHcCCeEEEEECcccccCCCCceeEEEEeCCHHHHH
Confidence             12236899999999999973   5577776 456543

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.82  E-value=1.7e-19  Score=166.95  Aligned_cols=186  Identities=16%  Similarity=0.178  Sum_probs=133.5

Q ss_pred             HHHHHHHhccc-CCCCccCChhHHHHHHHH----HhHcCCCc-----------EEEcCChHHHHHHHHHHcccc--C---
Q psy5413          82 EMKNYMFNCEV-GDDVYLEDPTCKELQEKA----AKLAGKEA-----------AIFVPSGTMGNLIAIMTHCDR--R---  140 (285)
Q Consensus        82 ~v~~a~~~~~~-~~~~y~~~~~~~~l~~~l----a~~~g~~~-----------~~~~~~Gs~a~~~al~~~~~~--~---  140 (285)
                      .+.+++..... +...|...+...++++.+    ++++|.+.           +++++|||+|+..++.++...  +   
T Consensus        89 ~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~  168 (486)
T 1js3_A           89 MLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQ  168 (486)
T ss_dssp             HHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhh
Confidence            45555555433 234566667677777665    55567653           589999999999999886531  1   


Q ss_pred             ---CC--------e--EEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEE
Q psy5413         141 ---DS--------E--IIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       141 ---g~--------~--vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                         |+        +  |+++...|.++......         .|..++.++.++++.+|+++|+++|+++.+ .+..+.+
T Consensus       169 ~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~---------~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~-~g~~p~~  238 (486)
T 1js3_A          169 AASPGLTQGAVLEKLVAYASDQAHSSVERAGLI---------GGVKLKAIPSDGKFAMRASALQEALERDKA-AGLIPFF  238 (486)
T ss_dssp             HHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHH---------HTCEEEEECCCTTSCCCHHHHHHHHHHHHH-TTCEEEE
T ss_pred             ccCccchhcccCCCEEEEECCCCcHHHHHHHHh---------CCCceEEeecCCCCCCCHHHHHHHHHHHHh-CCCCceE
Confidence               32        3  67788899876653333         388889998877888999999999987211 1112358


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh----h------cccCCeEEEecccccCcc-eeEEe
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE----V------CASVDTVMFCLSKGLGAP-VGSIL  276 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~----~------~~~~dv~~~s~sK~l~~p-~gg~~  276 (285)
                      |+++.++|++ |.+.|   +++|+++|++||+|+|+|++|+....    .      ..++|++++++||++++| ..|++
T Consensus       239 vv~~~~~n~t-G~~~~---l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l  314 (486)
T 1js3_A          239 VVATLGTTSC-CSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAM  314 (486)
T ss_dssp             EEEEBSCTTT-CCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEE
T ss_pred             EEEeCCCCCC-CCCCC---HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEE
Confidence            9999999999 88888   99999999999999999999883211    1      147899999999999874 33444


Q ss_pred             -ecCcc
Q psy5413         277 -AGPEE  281 (285)
Q Consensus       277 -~~~~~  281 (285)
                       +.+++
T Consensus       315 ~~~~~~  320 (486)
T 1js3_A          315 WVKRRT  320 (486)
T ss_dssp             EESCHH
T ss_pred             EEeCHH
Confidence             44443

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.82  E-value=6.4e-20  Score=167.12  Aligned_cols=215  Identities=16%  Similarity=0.109  Sum_probs=140.6

Q ss_pred             CCeeeeeccCC----cCCCcHHHHHHHHhcccCC--C-CccCChhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHH
Q psy5413          65 NIRTVDIRSDT----ISKPTMEMKNYMFNCEVGD--D-VYLEDPTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMT  135 (285)
Q Consensus        65 ~~~~~~~~~~~----~~~~~~~v~~a~~~~~~~~--~-~y~~~~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~  135 (285)
                      |+.++||.++.    .++++|++.+++.++....  . .....+...++++.++++++  .+.+++++||++|++.++++
T Consensus        42 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~  121 (433)
T 1zod_A           42 GRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRM  121 (433)
T ss_dssp             CCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHH
Confidence            56778885543    3456899999998776421  1 11235668899999999986  45679999999999999997


Q ss_pred             ccccC-CCeEEecC-Ccceeeecccccccc---cccc-cccceeeeeeecCCC--C--------CCCHHHHHHHhccccc
Q psy5413         136 HCDRR-DSEIIVGD-CSHIMLWEQGGASQT---SVYS-QIGRVLMRGVTNQKD--G--------TFDLDEMEAKFSTADN  199 (285)
Q Consensus       136 ~~~~~-g~~vi~~~-~~h~~~~~~~~~~~~---~~~~-~~~g~~~~~~~~~~~--~--------~~d~~~l~~~i~~~~~  199 (285)
                      +...+ +++|++.+ .+|+.+.........   ..|. ...+...+.++....  +        .+|+++|++++++.  
T Consensus       122 ~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--  199 (433)
T 1zod_A          122 AKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQ--  199 (433)
T ss_dssp             HHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHH--
T ss_pred             HHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhc--
Confidence            64323 45677654 567654321111100   0010 112455554443111  1        13699999999741  


Q ss_pred             ccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----hcc----cCCeEEEecccccCc
Q psy5413         200 IHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE-----VCA----SVDTVMFCLSKGLGA  270 (285)
Q Consensus       200 ~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----~~~----~~dv~~~s~sK~l~~  270 (285)
                       +.+++++|++++++|++|..+.+.+++++|+++|++||++||+||+|+++..     ..+    ..|  +.++||++++
T Consensus       200 -~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~d--i~s~sK~~~~  276 (433)
T 1zod_A          200 -SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPD--ILTLSKTLGA  276 (433)
T ss_dssp             -CCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS--EEEECHHHHT
T ss_pred             -CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCC--EEEecccccC
Confidence             1127899999988888833678899999999999999999999999984321     111    223  5588899876


Q ss_pred             -ceeEEeecCccccc
Q psy5413         271 -PVGSILAGPEEFIQ  284 (285)
Q Consensus       271 -p~gg~~~~~~~~i~  284 (285)
                       .+.|++++++++++
T Consensus       277 G~~ig~~~~~~~~~~  291 (433)
T 1zod_A          277 GLPLAAIVTSAAIEE  291 (433)
T ss_dssp             TSSCEEEEECHHHHH
T ss_pred             CCCeeEEEEhHHHHH
Confidence             33456666666653

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.82  E-value=1.1e-20  Score=177.28  Aligned_cols=198  Identities=12%  Similarity=0.113  Sum_probs=144.7

Q ss_pred             eeeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc-------CC-----CcEEEcCChHHHHHHHHHH
Q psy5413          68 TVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA-------GK-----EAAIFVPSGTMGNLIAIMT  135 (285)
Q Consensus        68 ~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~-------g~-----~~~~~~~~Gs~a~~~al~~  135 (285)
                      +++|..+.+..+++.+.+++.+.... ..|.......++++.+++.+       +.     +.+++++|+++++..++.+
T Consensus       106 ~i~l~~g~~~~~~~~~~~al~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~  184 (546)
T 2zy4_A          106 SLSYVRDQLGLDPAAFLHEMVDGILG-CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFES  184 (546)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHT-CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHH
T ss_pred             hhecccCCCCCCChHHHHHHHHhhhc-CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHH
Confidence            67888888888888888888766543 45765545556776665543       11     3458888889999999887


Q ss_pred             c----cccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413         136 H----CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVC  209 (285)
Q Consensus       136 ~----~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~  209 (285)
                      +    +.++||.|++++++|........+.       ..|.+++.++.++  ++.+|+++|++.++.       ++++|+
T Consensus       185 l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~-------~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-------~~k~v~  250 (546)
T 2zy4_A          185 LKLNGLLKAGDKVAIGMPVFTPYIEIPELA-------QYALEEVAINADPSLNWQYPDSELDKLKDP-------AIKIFF  250 (546)
T ss_dssp             HHHTTSSCTTCEEEEEESCCHHHHHHHHST-------TSCCEEEEEECBGGGTTBCCHHHHGGGGST-------TEEEEE
T ss_pred             hhhhhcCCCCCEEEEeCCCCccHHHHHHHc-------CCCcEEEEEecCcccCCCCCHHHHHHhhCC-------CCeEEE
Confidence            3    2358999999887765443321121       3367778887643  345899999988765       799999


Q ss_pred             EecccCCCCeeeCCHHHHHHHHHHH--HHcCCeEEEeCccCChh-------hhcccCCeEEEecccccCc--ceeEEeec
Q psy5413         210 VENTHNYCGGTVLPMQWLRELKARC--QEHNIPVHMDGARLPLA-------EVCASVDTVMFCLSKGLGA--PVGSILAG  278 (285)
Q Consensus       210 i~~~~n~~gG~~~~~~~l~~i~~la--~~~gi~li~Dea~~~~~-------~~~~~~dv~~~s~sK~l~~--p~gg~~~~  278 (285)
                      +++|+||| |.+++.+++++|+++|  +++|++||+||+|..+.       .......+++.|+||.+|.  .+.|++++
T Consensus       251 l~~p~NPt-G~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~  329 (546)
T 2zy4_A          251 CVNPSNPP-SVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWRLGVVAA  329 (546)
T ss_dssp             EESSCSSS-CBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGCEEEEEE
T ss_pred             EECCCCCC-CccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcceEEEEE
Confidence            99999999 9999999999999999  78999999999988321       1112334669999999864  56677777


Q ss_pred             Ccc
Q psy5413         279 PEE  281 (285)
Q Consensus       279 ~~~  281 (285)
                      +++
T Consensus       330 ~~~  332 (546)
T 2zy4_A          330 HQQ  332 (546)
T ss_dssp             ESS
T ss_pred             CCH
Confidence            654

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.82  E-value=1.6e-20  Score=170.55  Aligned_cols=202  Identities=13%  Similarity=0.026  Sum_probs=149.1

Q ss_pred             eeeeeccCCcC---C-CcHHHHHHHH--hcccC---CCCc-cCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHH--HH
Q psy5413          67 RTVDIRSDTIS---K-PTMEMKNYMF--NCEVG---DDVY-LEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNL--IA  132 (285)
Q Consensus        67 ~~~~~~~~~~~---~-~~~~v~~a~~--~~~~~---~~~y-~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~--~a  132 (285)
                      ..++|..+.+.   . .++.+.+++.  +....   ...| +..+...+|++.++++++.+  .+++++|+++++.  .+
T Consensus        26 ~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~  105 (423)
T 3ez1_A           26 LNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVL  105 (423)
T ss_dssp             CCEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHH
T ss_pred             ceEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHH
Confidence            45888888887   3 3457888875  44332   2467 66667889999999999864  5689999999997  88


Q ss_pred             HHHcccc-C---------CCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccC
Q psy5413         133 IMTHCDR-R---------DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHC  202 (285)
Q Consensus       133 l~~~~~~-~---------g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~  202 (285)
                      +++++.. +         |++|+++.++|.......         ...|.+++.++.++++ +|+++|++++++     .
T Consensus       106 ~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~---------~~~g~~~~~v~~~~~g-~d~~~l~~~l~~-----~  170 (423)
T 3ez1_A          106 TFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLL---------QTLGFELLTVDMQSDG-PDVDAVERLAGT-----D  170 (423)
T ss_dssp             HHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHH---------HHHTCEEEEEEEETTE-ECHHHHHHHHHS-----C
T ss_pred             HHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHH---------HHcCCEEEeccCCCCC-CCHHHHHHHHhh-----C
Confidence            8876631 5         588999888775443322         2348888888875554 899999999952     1


Q ss_pred             CceEEEEEe-cccCCCCeeeCCHHHHHHHHHHH-HHcCCeEEEeCccCCh--h-----------hh-----cccCCeEEE
Q psy5413         203 ASTSLVCVE-NTHNYCGGTVLPMQWLRELKARC-QEHNIPVHMDGARLPL--A-----------EV-----CASVDTVMF  262 (285)
Q Consensus       203 ~~~~~v~i~-~~~n~~gG~~~~~~~l~~i~~la-~~~gi~li~Dea~~~~--~-----------~~-----~~~~dv~~~  262 (285)
                      .++++|++. +++||| |.+++.+++++|+++| ++||+++|+||+|...  .           .+     ..+.++++.
T Consensus       171 ~~~~~v~~~~~~~NPt-G~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  249 (423)
T 3ez1_A          171 PSVKGILFVPTYSNPG-GETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFA  249 (423)
T ss_dssp             TTEEEEEECSSSCTTT-CCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEE
T ss_pred             CCceEEEECCCCCCCC-CcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEe
Confidence            178999876 699999 9999999999999999 9999999999998721  1           11     112345699


Q ss_pred             eccccc-CcceeEEeecCccccc
Q psy5413         263 CLSKGL-GAPVGSILAGPEEFIQ  284 (285)
Q Consensus       263 s~sK~l-~~p~gg~~~~~~~~i~  284 (285)
                      |+||++ +|.+.|+++.++++++
T Consensus       250 S~sK~~~~G~r~G~~~~~~~~~~  272 (423)
T 3ez1_A          250 STSKITFAGAGLGFVASSEDNIR  272 (423)
T ss_dssp             ESTTTSCSSSSCEEEEECHHHHH
T ss_pred             CchhhccCCcceEEEEeCHHHHH
Confidence            999963 4466778888877654

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.82  E-value=1.6e-19  Score=166.12  Aligned_cols=193  Identities=19%  Similarity=0.161  Sum_probs=141.7

Q ss_pred             eeeeeccC-CcCC-CcHHHHHHHHhc----cc-CCCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcc
Q psy5413          67 RTVDIRSD-TISK-PTMEMKNYMFNC----EV-GDDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        67 ~~~~~~~~-~~~~-~~~~v~~a~~~~----~~-~~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~  137 (285)
                      .++++..+ .+.. .++.+.++....    .. +...|+  .++...++++.+++++|.+.++++++|++|+..+++ ++
T Consensus        90 ~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~~~g~~~~~~l~~~la~~~g~~~~i~~~sGt~al~~~l~-~~  168 (464)
T 1ibj_A           90 LLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAVTH-LI  168 (464)
T ss_dssp             HHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHT-TS
T ss_pred             eEEECCCCCCCCCCCCccHHhhhhhhhhcccccCCccccCCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHH-Hh
Confidence            34555553 3333 344565554421    11 223342  456789999999999999888999999999998886 45


Q ss_pred             ccCCCeEEecCCcceeeeccc-ccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCC
Q psy5413         138 DRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNY  216 (285)
Q Consensus       138 ~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~  216 (285)
                       ++||+|+++++.|..+.... ...      ...|.+++.++..     |+++++++|++       ++++|++++|+||
T Consensus       169 -~~Gd~Vi~~~~~y~~~~~~~~~~~------~~~G~~v~~v~~~-----d~~~l~~~i~~-------~tk~v~l~~p~Np  229 (464)
T 1ibj_A          169 -KNGEEIVAGDDVYGGSDRLLSQVV------PRSGVVVKRVNTT-----KLDEVAAAIGP-------QTKLVWLESPTNP  229 (464)
T ss_dssp             -CTTCEEEEESSCCHHHHHHHHHTS------GGGTCEEEEECTT-----SHHHHHHHCCS-------SEEEEEECSSCTT
T ss_pred             -CCCCEEEEECCCchhHHHHHHHHH------HHcCCEEEEeCCC-----CHHHHHHHhcc-------CceEEEEeCCCCC
Confidence             68999999887765443210 112      3458888888763     89999999987       8999999999999


Q ss_pred             CCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC-hh--hhcccCCeEEEecccccCcc---eeEEeecCc-ccc
Q psy5413         217 CGGTVLPMQWLRELKARCQEHNIPVHMDGARLP-LA--EVCASVDTVMFCLSKGLGAP---VGSILAGPE-EFI  283 (285)
Q Consensus       217 ~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~-~~--~~~~~~dv~~~s~sK~l~~p---~gg~~~~~~-~~i  283 (285)
                      + |.+++   +++|+++|++||+++|+||+|.. ..  ....+.|+++.|+||+++++   ++|+++.++ +++
T Consensus       230 t-G~v~~---l~~i~~la~~~gi~livDea~~~g~~~~~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~  299 (464)
T 1ibj_A          230 R-QQISD---IRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLA  299 (464)
T ss_dssp             T-CCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHH
T ss_pred             C-CEeec---HHHHHHHHHHcCCEEEEECCCcccccCChhhcCCEEEEECCcccccCCCCCcEEEEEEChHHHH
Confidence            9 89998   99999999999999999999882 21  22246899999999999863   557777664 554

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.82  E-value=8e-20  Score=166.41  Aligned_cols=203  Identities=13%  Similarity=0.044  Sum_probs=138.5

Q ss_pred             CCeeeeeccCCcCC-CcHHHHHHHHhccc------CCCCccCChhHHHHHHHHHhHc----CC--CcEEEcCChHHHHHH
Q psy5413          65 NIRTVDIRSDTISK-PTMEMKNYMFNCEV------GDDVYLEDPTCKELQEKAAKLA----GK--EAAIFVPSGTMGNLI  131 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~------~~~~y~~~~~~~~l~~~la~~~----g~--~~~~~~~~Gs~a~~~  131 (285)
                      ++++++|..+++.. .+|.+.+++.++..      +...|+......+|++.+++++    +.  +.+++++|+++++..
T Consensus        55 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~  134 (432)
T 3ei9_A           55 DAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISR  134 (432)
T ss_dssp             TCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHH
T ss_pred             CCCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHH
Confidence            45789999887775 67799999887654      1235655566789999999996    43  456888888999886


Q ss_pred             HHHHccccCCCeEEecCCcceeeeccccccc-cccccc--ccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceE
Q psy5413         132 AIMTHCDRRDSEIIVGDCSHIMLWEQGGASQ-TSVYSQ--IGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       132 al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~-~~~~~~--~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                       +..++ ++||.|+++.+.|........... ...+..  ....+++.++.+++  ...|+++     .+       +++
T Consensus       135 -l~~l~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~-------~~~  200 (432)
T 3ei9_A          135 -LQVMF-GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----VG-------RTD  200 (432)
T ss_dssp             -HHHHH-CTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----CC-------CCS
T ss_pred             -HHHHc-CCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----CC-------CCC
Confidence             45555 589999998887755433221210 000000  00024555555332  2234222     12       688


Q ss_pred             EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---------hhhc--ccCCeEEEecccccCc--cee
Q psy5413         207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---------AEVC--ASVDTVMFCLSKGLGA--PVG  273 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---------~~~~--~~~dv~~~s~sK~l~~--p~g  273 (285)
                      +|++++|+||+ |.+++.+++++|+++|++||+++|+||+|..+         ..+.  ...++++.|+||+++.  .+.
T Consensus       201 ~v~l~~p~NPt-G~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~  279 (432)
T 3ei9_A          201 IIFFCSPNNPT-GAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRL  279 (432)
T ss_dssp             EEEEESSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCC
T ss_pred             EEEEeCCCCCC-CCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccce
Confidence            99999999999 89999999999999999999999999998822         1111  1234669999999864  556


Q ss_pred             EEeecCccc
Q psy5413         274 SILAGPEEF  282 (285)
Q Consensus       274 g~~~~~~~~  282 (285)
                      |++++++++
T Consensus       280 G~~~~~~~~  288 (432)
T 3ei9_A          280 GWTVIPKKL  288 (432)
T ss_dssp             EEEECCTTC
T ss_pred             EEEEEChHH
Confidence            778777766

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.82  E-value=4e-20  Score=163.71  Aligned_cols=189  Identities=11%  Similarity=0.073  Sum_probs=138.1

Q ss_pred             CCeeeeeccCC-cCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCC
Q psy5413          65 NIRTVDIRSDT-ISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRD  141 (285)
Q Consensus        65 ~~~~~~~~~~~-~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g  141 (285)
                      |+.++||.++. +..++|++.+++.+.......|.... ..++++.++++++.+  .+++++||++|+..+++++.   |
T Consensus        14 g~~~id~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~-~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~---g   89 (350)
T 3fkd_A           14 SSEIVNFSTTVWTDGDKDHLEKHLVENLNCIRHYPEPD-AGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR---G   89 (350)
T ss_dssp             --CCEECSCCSCCCSCCHHHHHHHHHTGGGGGSCCCTT-CHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT---T
T ss_pred             cccEEEccCCCCCCCCCHHHHHHHHHhHhHHhcCCCCc-HHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC---C
Confidence            46789998764 44578899999988774444565444 389999999999865  57999999999999999875   8


Q ss_pred             CeEEecCCcceeeecccccccccccccccceeeeeeec-CCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCee
Q psy5413         142 SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN-QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT  220 (285)
Q Consensus       142 ~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~  220 (285)
                      |+|+++.++|.......         ...|.+++.++. ++...+++        +       ++++|++++|+||+ |.
T Consensus        90 d~Vi~~~p~~~~~~~~~---------~~~g~~~~~v~~~~~~~~~~~--------~-------~~~~v~i~~p~npt-G~  144 (350)
T 3fkd_A           90 SRSLIAIPSFAEYEDAC---------RMYEHEVCFYPSNEDIGEADF--------S-------NMDFCWLCNPNNPD-GR  144 (350)
T ss_dssp             CEEEEEESCCHHHHHHH---------HHTTCEEEEEETTSCGGGSCC--------T-------TCSEEEEESSCTTT-CC
T ss_pred             CEEEEeCCCcHHHHHHH---------HHcCCeEEEEecCCccccCcc--------C-------CCCEEEEeCCCCCc-CC
Confidence            99999888775543322         234888888887 44333333        3       68999999999999 99


Q ss_pred             eCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhcc--cCCeEEEecccccCc--ceeEEeecCccccc
Q psy5413         221 VLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVCA--SVDTVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       221 ~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~~--~~dv~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      ++|.+++++|++.|+++  ++|+||+|..+.       ....  ..++++.|+||+++.  .+.|+++.++++++
T Consensus       145 ~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~  217 (350)
T 3fkd_A          145 LLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMK  217 (350)
T ss_dssp             CCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHH
T ss_pred             CCCHHHHHHHHHhCCCC--EEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCHHHHH
Confidence            99977777777766655  999999988211       1111  223568999999873  56678887877654

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.82  E-value=8.4e-20  Score=167.98  Aligned_cols=204  Identities=11%  Similarity=0.055  Sum_probs=143.2

Q ss_pred             CeeeeeccCCcCCCcHHHHHHHHhcccC--------CC-Cc-cCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHH
Q psy5413          66 IRTVDIRSDTISKPTMEMKNYMFNCEVG--------DD-VY-LEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAI  133 (285)
Q Consensus        66 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~--------~~-~y-~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al  133 (285)
                      +..+.|.++..+..++.+.+++.+.+..        +. .+ .......++++.+++++|.+  .+++++|+++++..++
T Consensus        66 ~~~iyld~~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~  145 (465)
T 3e9k_A           66 ENAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLM  145 (465)
T ss_dssp             CBCEECBTTTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHH
T ss_pred             CCeEEecCCccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHH
Confidence            4567777766665555666665544321        11 11 12244577999999999875  5699999999999999


Q ss_pred             HHccccCCC---eEEecCCcceeeec-ccccccccccccccceee-----eeeecCCCCCCCHHHHHHHhcccccccCCc
Q psy5413         134 MTHCDRRDS---EIIVGDCSHIMLWE-QGGASQTSVYSQIGRVLM-----RGVTNQKDGTFDLDEMEAKFSTADNIHCAS  204 (285)
Q Consensus       134 ~~~~~~~g~---~vi~~~~~h~~~~~-~~~~~~~~~~~~~~g~~~-----~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~  204 (285)
                      ++++ ++++   +|++..+.|.+... .....      ...|.++     ...+.+.++.+|+++|+++|++    +.++
T Consensus       146 ~~~~-~~~~~~~~Vl~~~~~~~s~~~~~~~~~------~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~----~~~~  214 (465)
T 3e9k_A          146 LSFF-KPTPKRYKILLEAKAFPSDHYAIESQL------QLHGLNIEESMRMIKPREGEETLRIEDILEVIEK----EGDS  214 (465)
T ss_dssp             HHHC-CCCSSSCEEEEETTCCHHHHHHHHHHH------HHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHH----HGGG
T ss_pred             HHhc-cccCCCCEEEEcCCcCCchHHHHHHHH------HHcCCcceeeeEEEecCCCCCccCHHHHHHHHHh----cCCC
Confidence            9986 3544   49988887754321 11111      1234443     2335555677899999999974    2237


Q ss_pred             eEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh---hhcccCCeEEEecccccC-ccee-EEeec
Q psy5413         205 TSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA---EVCASVDTVMFCLSKGLG-APVG-SILAG  278 (285)
Q Consensus       205 ~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~---~~~~~~dv~~~s~sK~l~-~p~g-g~~~~  278 (285)
                      +++|++++++|++ |.+.|   +++|.++|++||+++|+|++|+ +..   ....++|+++.|++|+++ +|.| |+++.
T Consensus       215 ~~lv~~~~~~n~t-G~~~~---l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~  290 (465)
T 3e9k_A          215 IAVILFSGVHFYT-GQHFN---IPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFI  290 (465)
T ss_dssp             EEEEEEESBCTTT-CBBCC---HHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTTCCCEEEE
T ss_pred             eEEEEEeCcccCc-ceeec---HHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCEEEECcccccccCCCceEEEEE
Confidence            9999999999999 89999   9999999999999999999988 221   123578999999999994 5654 66666


Q ss_pred             Cccccc
Q psy5413         279 PEEFIQ  284 (285)
Q Consensus       279 ~~~~i~  284 (285)
                      ++++++
T Consensus       291 ~~~~~~  296 (465)
T 3e9k_A          291 HEKHAH  296 (465)
T ss_dssp             CGGGTT
T ss_pred             cHHHHh
Confidence            676653

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.82  E-value=9.2e-20  Score=165.37  Aligned_cols=181  Identities=17%  Similarity=0.111  Sum_probs=138.6

Q ss_pred             CcHHHHHHHHhcccC-CC-Ccc----CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHc-cccCCCeEEecCCcc
Q psy5413          79 PTMEMKNYMFNCEVG-DD-VYL----EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTH-CDRRDSEIIVGDCSH  151 (285)
Q Consensus        79 ~~~~v~~a~~~~~~~-~~-~y~----~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~-~~~~g~~vi~~~~~h  151 (285)
                      .++++.+++.+.... .. .|+    ..+...++++.+++++|.+..+++++|++|+..+++++ + ++|++|+++.+.|
T Consensus        14 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~-~~gd~Vl~~~~~~   92 (418)
T 2c81_A           14 HSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGI-GEGDEVIVPSLTW   92 (418)
T ss_dssp             CCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTC-CTTCEEEEESSSC
T ss_pred             CCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCC-CCcCEEEECCCcc
Confidence            367888888776542 11 133    22348999999999999988899999999999999998 5 6899999998888


Q ss_pred             eeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHH
Q psy5413         152 IMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLREL  230 (285)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i  230 (285)
                      .......         ...|.+++.++.++ ++.+|+++|++++++       ++++|++++   ++ |.+.+   +++|
T Consensus        93 ~~~~~~~---------~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-------~~~~v~~~~---~~-G~~~~---~~~i  149 (418)
T 2c81_A           93 IATATAV---------LNVNALPVFVDVEADTYCIDPQLIKSAITD-------KTKAIIPVH---LF-GSMAN---MDEI  149 (418)
T ss_dssp             THHHHHH---------HHTTCEEEEECBCTTTCSBCHHHHGGGCCT-------TEEEECCBC---CT-TCCCC---HHHH
T ss_pred             HhHHHHH---------HHcCCEEEEEecCCCCCCcCHHHHHHhhCC-------CCeEEEEeC---Cc-CCccc---HHHH
Confidence            6654422         23488888888754 677899999999977       789998765   45 77777   9999


Q ss_pred             HHHHHHcCCeEEEeCccCChh-----hhcccCCeEEEec--ccccCcceeEEeecC-cccc
Q psy5413         231 KARCQEHNIPVHMDGARLPLA-----EVCASVDTVMFCL--SKGLGAPVGSILAGP-EEFI  283 (285)
Q Consensus       231 ~~la~~~gi~li~Dea~~~~~-----~~~~~~dv~~~s~--sK~l~~p~gg~~~~~-~~~i  283 (285)
                      .++|++||++||+||+|+...     ......|+.+.|+  ||++++..||+++.+ ++++
T Consensus       150 ~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~K~~~~g~~g~~~~~~~~l~  210 (418)
T 2c81_A          150 NEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQGKVLTAGEGGIIVTKNPRLF  210 (418)
T ss_dssp             HHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHH
T ss_pred             HHHHHHCCCEEEEECcccccCccCCEecccccceEEEeccCCcccCCCCeEEEEECCHHHH
Confidence            999999999999999998332     1112236777777  999987677888774 5554

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.82  E-value=3.8e-20  Score=167.43  Aligned_cols=204  Identities=14%  Similarity=0.112  Sum_probs=138.3

Q ss_pred             CeeeeeccCCcCCCc---HHHHHHHHhcccCC------CCccCChhHHHHHHHHHhHc------C--CCcEEEcCChHHH
Q psy5413          66 IRTVDIRSDTISKPT---MEMKNYMFNCEVGD------DVYLEDPTCKELQEKAAKLA------G--KEAAIFVPSGTMG  128 (285)
Q Consensus        66 ~~~~~~~~~~~~~~~---~~v~~a~~~~~~~~------~~y~~~~~~~~l~~~la~~~------g--~~~~~~~~~Gs~a  128 (285)
                      +.+++|..+.+....   +.+.+++.+...+.      ..|.......++++.+++++      +  .+.+++++||++|
T Consensus        31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~a  110 (417)
T 3g7q_A           31 PGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSA  110 (417)
T ss_dssp             -CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHH
T ss_pred             CCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHH
Confidence            467889888777632   35566665544321      25776677889999999986      2  2467999999999


Q ss_pred             HHHHHHHccccCCC-----eEEec-CCcceeeecccc-cccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccc
Q psy5413         129 NLIAIMTHCDRRDS-----EIIVG-DCSHIMLWEQGG-ASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNI  200 (285)
Q Consensus       129 ~~~al~~~~~~~g~-----~vi~~-~~~h~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~  200 (285)
                      +..++++++ ++|+     +|+++ .++|........ ..   .+ ...+..+..++.. ..+.+|+++++  +++    
T Consensus       111 l~~~~~~l~-~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~d~~~l~--~~~----  179 (417)
T 3g7q_A          111 FFYLFNLFA-GRRADGSTKKVLFPLAPEYIGYADSGLEDD---LF-VSARPNIELLPEGQFKYHVDFEHLH--IGE----  179 (417)
T ss_dssp             HHHHHHHHS-BC----CCBEEEESSCCCHHHHHC-----C---CE-EECCCEEEEEGGGEEEEECCGGGCC--CCT----
T ss_pred             HHHHHHHHc-CCCccCCcceEEEeCCCccccchhhccchh---hh-ccccCcccccCCcccccccCHHHhc--ccc----
Confidence            999999987 5776     78875 655433221110 00   00 1224445555432 13356888887  555    


Q ss_pred             cCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------hh---cccCCeEEEecccccCc-
Q psy5413         201 HCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------EV---CASVDTVMFCLSKGLGA-  270 (285)
Q Consensus       201 ~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~---~~~~dv~~~s~sK~l~~-  270 (285)
                         ++++|++++|+||| |.+++.+++++|+++|++||+++|+||+|....      ..   ....++++.|+||+++. 
T Consensus       180 ---~~~~v~~~~p~Npt-G~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G  255 (417)
T 3g7q_A          180 ---ETGMICVSRPTNPT-GNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSKLGLPG  255 (417)
T ss_dssp             ---TEEEEEEESSCTTT-CCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGGGTCTT
T ss_pred             ---CceEEEECCCCCCC-CCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCEEEEEechhccCCC
Confidence               78999999999999 999999999999999999999999999987211      11   12334569999995332 


Q ss_pred             ceeEEeecCccccc
Q psy5413         271 PVGSILAGPEEFIQ  284 (285)
Q Consensus       271 p~gg~~~~~~~~i~  284 (285)
                      .+.|+++.++++++
T Consensus       256 ~r~G~~~~~~~~~~  269 (417)
T 3g7q_A          256 SRCGIIIANDKTIT  269 (417)
T ss_dssp             SCCEEEECCHHHHH
T ss_pred             cceEEEEeCHHHHH
Confidence            45678888877654

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.82  E-value=8.3e-20  Score=164.77  Aligned_cols=194  Identities=14%  Similarity=0.120  Sum_probs=138.4

Q ss_pred             CCeeeeeccCCcC-CCcHHHHHHHHhcccC------CCCccCChhHHHHHHHHHhH--cC-C--CcEEEcCChHHHHHHH
Q psy5413          65 NIRTVDIRSDTIS-KPTMEMKNYMFNCEVG------DDVYLEDPTCKELQEKAAKL--AG-K--EAAIFVPSGTMGNLIA  132 (285)
Q Consensus        65 ~~~~~~~~~~~~~-~~~~~v~~a~~~~~~~------~~~y~~~~~~~~l~~~la~~--~g-~--~~~~~~~~Gs~a~~~a  132 (285)
                      ++.+++|..+.+. .++|.+.+++.++...      ...|+..+...++++.++++  .| .  +.+++++|+++++..+
T Consensus        32 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~~  111 (400)
T 3asa_A           32 QHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDLFRL  111 (400)
T ss_dssp             TSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHHH
T ss_pred             CCceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHHHHH
Confidence            4567899877665 4678899998765531      23465556688999999999  46 3  4578999999999987


Q ss_pred             HHHccccCCCeEEecCCcceeeeccccccccccccccccee-eeeeecCCCC--CCCHHHHHHHhcccccccCCceEEEE
Q psy5413         133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVL-MRGVTNQKDG--TFDLDEMEAKFSTADNIHCASTSLVC  209 (285)
Q Consensus       133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~--~~d~~~l~~~i~~~~~~~~~~~~~v~  209 (285)
                      +.. + .+|++|++..++|......   .      ...|.+ ++.++.++++  ..|++   + + +       ++++|+
T Consensus       112 ~~~-~-~~gd~Vl~~~p~y~~~~~~---~------~~~g~~~~~~~~~~~~~~~~~~l~---~-~-~-------~~~~v~  168 (400)
T 3asa_A          112 LSF-F-GPNQTVAIQDPSYPAYLDI---A------RLTGAKEIIALPCLQENAFFPEFP---E-D-T-------HIDILC  168 (400)
T ss_dssp             HHH-H-CSSCEEEEEESCCHHHHHH---H------HHTTCSEEEEEECCGGGTTCCCCC---T-T-C-------CCSEEE
T ss_pred             HHH-c-CCCCEEEECCCCcHHHHHH---H------HHcCCcceEecccchhcCcccChh---h-c-c-------CccEEE
Confidence            654 4 5889999887776443321   1      233666 7777764322  22321   1 1 2       689999


Q ss_pred             EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc--c-cCC--eEEEecccccCc--ceeEE
Q psy5413         210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC--A-SVD--TVMFCLSKGLGA--PVGSI  275 (285)
Q Consensus       210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~--~-~~d--v~~~s~sK~l~~--p~gg~  275 (285)
                      +++|+||| |.++|.+++++|+++|++||+++|+||+|..+.       .+.  . ..|  +++.|+||+++.  .+.|+
T Consensus       169 l~~p~npt-G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~  247 (400)
T 3asa_A          169 LCSPNNPT-GTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGW  247 (400)
T ss_dssp             EESSCTTT-CCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEE
T ss_pred             EeCCCCCC-CCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeE
Confidence            99999999 899999999999999999999999999988221       111  1 133  569999999863  45677


Q ss_pred             eecCccc
Q psy5413         276 LAGPEEF  282 (285)
Q Consensus       276 ~~~~~~~  282 (285)
                      ++.++++
T Consensus       248 ~~~~~~~  254 (400)
T 3asa_A          248 TVIPQEL  254 (400)
T ss_dssp             EECCTTC
T ss_pred             EeeChhh
Confidence            7777776

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.81  E-value=2.7e-19  Score=164.00  Aligned_cols=199  Identities=17%  Similarity=0.085  Sum_probs=142.8

Q ss_pred             eeeeeccCCc-CC-----CcHHHHHHHHhcc----cCCCCccCChhHHHHHHHHHhHc-CCC-------cEEE--cCChH
Q psy5413          67 RTVDIRSDTI-SK-----PTMEMKNYMFNCE----VGDDVYLEDPTCKELQEKAAKLA-GKE-------AAIF--VPSGT  126 (285)
Q Consensus        67 ~~~~~~~~~~-~~-----~~~~v~~a~~~~~----~~~~~y~~~~~~~~l~~~la~~~-g~~-------~~~~--~~~Gs  126 (285)
                      ..++|..+.+ +.     ..+.+.+++.+..    .+...|.......++++.+++++ |.+       .+++  ++||+
T Consensus        50 ~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt  129 (448)
T 3meb_A           50 KKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGT  129 (448)
T ss_dssp             TCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHH
T ss_pred             CeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHH
Confidence            3588887766 32     4567777754433    23456766667889999999997 754       5677  99999


Q ss_pred             HHHHHH--HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeec-CCC--CCCCHHHHHHHhccccccc
Q psy5413         127 MGNLIA--IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN-QKD--GTFDLDEMEAKFSTADNIH  201 (285)
Q Consensus       127 ~a~~~a--l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~--~~~d~~~l~~~i~~~~~~~  201 (285)
                      +|+..+  +..++ .+||+|++++++|.........     +....|.+++.++. +++  +.+|++++++++++    +
T Consensus       130 ~al~l~~~~~~~~-~~gd~Vlv~~p~~~~~~~~~~~-----~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~----~  199 (448)
T 3meb_A          130 GSLHIGFEFLHLW-MPKAEFYMPSTTWPNHYGIYDK-----VFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQS----A  199 (448)
T ss_dssp             HHHHHHHHHHHHH-CTTCCEEEESSCCTHHHHHHHH-----HHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHH----S
T ss_pred             HHHHHHHHHHHHh-CCCCEEEECCCCCHhHHHHHHh-----hHHhCCCeEEEEeccccccCCCcCHHHHHHHHHh----C
Confidence            999874  44444 5899999998887554332220     00034778888886 443  67999999999975    1


Q ss_pred             CCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------------hh-cccCCeE-EEecccc
Q psy5413         202 CASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------------EV-CASVDTV-MFCLSKG  267 (285)
Q Consensus       202 ~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------------~~-~~~~dv~-~~s~sK~  267 (285)
                      ..+++++++++|+||| |.+++.+++++|+++|++||+++|+||+|..+.            .+ ..+.+++ +.|+||.
T Consensus       200 ~~~~~~v~~~~p~NPt-G~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  278 (448)
T 3meb_A          200 PEKSIFLFHACAHNPS-GIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKN  278 (448)
T ss_dssp             CTTCEEEEESSSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTT
T ss_pred             CCCcEEEEeCCCCCCC-CcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEeccccc
Confidence            2267899999999999 899999999999999999999999999977221            11 1234444 9999999


Q ss_pred             cCc--ceeEEe
Q psy5413         268 LGA--PVGSIL  276 (285)
Q Consensus       268 l~~--p~gg~~  276 (285)
                      ++.  .+.|++
T Consensus       279 ~g~~G~RiG~l  289 (448)
T 3meb_A          279 FGLYGERIGCL  289 (448)
T ss_dssp             SCCGGGCCEEE
T ss_pred             CCCccccceee
Confidence            875  344554

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.70  E-value=9.4e-22  Score=176.99  Aligned_cols=199  Identities=15%  Similarity=0.125  Sum_probs=145.6

Q ss_pred             eeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----C----CCcEEEcCChHHHHHHHHHHc
Q psy5413          67 RTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----G----KEAAIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        67 ~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g----~~~~~~~~~Gs~a~~~al~~~  136 (285)
                      .+++|..+.+.. ++|++.+++.++... ...|.. . ..++++.+++++    |    .+.+++++||++|+..+++++
T Consensus        32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-~-~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~  109 (392)
T 3b1d_A           32 QLLPAWIADMDFEVMPEVKQAIHDYAEQLVYGYTY-A-SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAF  109 (392)
Confidence            678888777654 567899998877643 334442 2 778888888875    3    245689999999999999998


Q ss_pred             cccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC-C--CCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         137 CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-K--DGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       137 ~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      . ++|++|++..++|.......         ...|.+++.++.. .  ++.+|++++++++++.      ++++|++++|
T Consensus       110 ~-~~gd~vl~~~p~~~~~~~~~---------~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~------~~~~v~~~~~  173 (392)
T 3b1d_A          110 T-KEGEAVLINSPVYPPFARSV---------RLNNRKLVSNSLKEENGLFQIDFEQLENDIVEN------DVKLYLLCNP  173 (392)
Confidence            6 58899998877765544322         2347777777763 2  2347999999999731      6789999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc---c---cCCeEEEecccccCc--ceeEEeec
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC---A---SVDTVMFCLSKGLGA--PVGSILAG  278 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~---~---~~dv~~~s~sK~l~~--p~gg~~~~  278 (285)
                      +||+ |.+++.+++++|+++|++||+++|+||+|..+.       .+.   .   ...+++.|+||+++.  .+.|+++.
T Consensus       174 ~npt-G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~  252 (392)
T 3b1d_A          174 HNPG-GRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAII  252 (392)
Confidence            9999 889999999999999999999999999988321       111   1   223558999999863  45566665


Q ss_pred             C-ccccc
Q psy5413         279 P-EEFIQ  284 (285)
Q Consensus       279 ~-~~~i~  284 (285)
                      + +++++
T Consensus       253 ~~~~~~~  259 (392)
T 3b1d_A          253 ENPTLCA  259 (392)
Confidence            4 44654

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.81  E-value=1.6e-19  Score=163.19  Aligned_cols=202  Identities=14%  Similarity=0.004  Sum_probs=146.9

Q ss_pred             CeeeeeccCCc-CC-CcHHHHHHHHhccc-CCCCccCChhHHHHHHHHHhHc-CCC-------cE--EEcCChHHHHHHH
Q psy5413          66 IRTVDIRSDTI-SK-PTMEMKNYMFNCEV-GDDVYLEDPTCKELQEKAAKLA-GKE-------AA--IFVPSGTMGNLIA  132 (285)
Q Consensus        66 ~~~~~~~~~~~-~~-~~~~v~~a~~~~~~-~~~~y~~~~~~~~l~~~la~~~-g~~-------~~--~~~~~Gs~a~~~a  132 (285)
                      ..+++|..+.+ .. +++.+.+++.++.. ....|.......++++.+++++ |.+       .+  ..+.+|++++..+
T Consensus        41 ~~~i~l~~g~~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~  120 (409)
T 4eu1_A           41 KRKVNLSIGVYRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIG  120 (409)
T ss_dssp             SSCEECCCSSCCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHH
T ss_pred             cCceeeeeeEEECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHH
Confidence            46789998886 44 46678888887643 2456766667789999999986 543       23  3588899998876


Q ss_pred             HHHc--cccCCCeEEecCCcceeeecccccccccccccccceeeeeeec--CCCCCCCHHHHHHHhcccccccCCceEEE
Q psy5413         133 IMTH--CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN--QKDGTFDLDEMEAKFSTADNIHCASTSLV  208 (285)
Q Consensus       133 l~~~--~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~i~~~~~~~~~~~~~v  208 (285)
                      ..++  +.++||+|+++.++|.......         ...|.+++.++.  .+++.+|++++++++++.    ..+++++
T Consensus       121 ~~~~~~~~~~gd~Vlv~~p~y~~~~~~~---------~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~----~~~~~~i  187 (409)
T 4eu1_A          121 GDLLNRFVANCNRIYGPDVGYPNHESIF---------AKAGMELTPYSYYDPATKGLNLAGMLECLDKA----PEGSVIL  187 (409)
T ss_dssp             HHHGGGTSSSCCEEEEESSCCTHHHHHH---------HHTTCEEEEECCEETTTTEECHHHHHHHHHHS----CTTCEEE
T ss_pred             HHHHHHhcCCCCEEEEeCCCcHhHHHHH---------HHcCCeEEEEEeecCcCCcCcHHHHHHHHHhC----CCCcEEE
Confidence            4332  2357899999988875543322         234888888875  345678999999999741    2256788


Q ss_pred             EEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---------hh----cccCC-eEEEecccccCc--ce
Q psy5413         209 CVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---------EV----CASVD-TVMFCLSKGLGA--PV  272 (285)
Q Consensus       209 ~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~----~~~~d-v~~~s~sK~l~~--p~  272 (285)
                      ++++|+||| |.+++.+++++|+++|++||+++|+||+|..+.         ..    ....+ +++.|+||.++.  .+
T Consensus       188 ~~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r  266 (409)
T 4eu1_A          188 VHACAHNPT-GVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHR  266 (409)
T ss_dssp             EESSSCTTT-CCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGC
T ss_pred             EECCCCCCC-CCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCC
Confidence            889999999 899999999999999999999999999987221         11    11234 448999999875  44


Q ss_pred             eEE---eecCcc
Q psy5413         273 GSI---LAGPEE  281 (285)
Q Consensus       273 gg~---~~~~~~  281 (285)
                      .|+   ++++++
T Consensus       267 iG~~~~v~~~~~  278 (409)
T 4eu1_A          267 CGALHISTASAE  278 (409)
T ss_dssp             CEEEEEECSSHH
T ss_pred             ceEEEEEeCCHH
Confidence            466   567766

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.81  E-value=5.1e-19  Score=164.50  Aligned_cols=194  Identities=13%  Similarity=0.042  Sum_probs=143.9

Q ss_pred             eeccCCcCCCcHHHHHHHHhcccC-CCCccCChhHHH----HHHHHHhHcCCC-------cEEEcCChHHHHHHHHHHcc
Q psy5413          70 DIRSDTISKPTMEMKNYMFNCEVG-DDVYLEDPTCKE----LQEKAAKLAGKE-------AAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        70 ~~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~~~~~~~----l~~~la~~~g~~-------~~~~~~~Gs~a~~~al~~~~  137 (285)
                      .+.+...+.++|.+.+++.+.... ...+...+...+    +++.+++++|.+       ..++++||++|+..++.++.
T Consensus        59 ~l~s~~t~~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~  138 (502)
T 3hbx_A           59 NLASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFK  138 (502)
T ss_dssp             BTTCCSCCCCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHH
T ss_pred             eeccccCCCCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHH
Confidence            333333355788999998876543 222334455454    455577788877       24679999999999998876


Q ss_pred             cc-------CCC-----eEEecCCcceeeecccccccccccccccceeeeeeecCCC-CCCCHHHHHHHhcccccccCCc
Q psy5413         138 DR-------RDS-----EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD-GTFDLDEMEAKFSTADNIHCAS  204 (285)
Q Consensus       138 ~~-------~g~-----~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~~~~~  204 (285)
                      .+       +|+     +|+++...|.++.....         ..|..++.++.+++ +.+|+++|+++|++       +
T Consensus       139 ~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~---------~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-------~  202 (502)
T 3hbx_A          139 RKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFAR---------YFEVELKEVKLSEGYYVMDPQQAVDMVDE-------N  202 (502)
T ss_dssp             HHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHH---------HTTCEEEEECCBTTBCSCCHHHHHHHCCT-------T
T ss_pred             HHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHH---------HcCceeEEEecCCCcCcCCHHHHHHHHhh-------C
Confidence            32       265     79999999987665333         34888888887655 78999999999988       7


Q ss_pred             eEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc------CCeEEEeCccCChh-----------hhcccCCeEEEecccc
Q psy5413         205 TSLVCVENTHNYCGGTVLPMQWLRELKARCQEH------NIPVHMDGARLPLA-----------EVCASVDTVMFCLSKG  267 (285)
Q Consensus       205 ~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~------gi~li~Dea~~~~~-----------~~~~~~dv~~~s~sK~  267 (285)
                      +++|+++.++|++ |.+.|   +++|.++|+++      |+++|+|++|++..           ....++|++.+++||+
T Consensus       203 t~~v~~~~~~n~t-G~~~~---l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~  278 (502)
T 3hbx_A          203 TICVAAILGSTLN-GEFED---VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKY  278 (502)
T ss_dssp             EEEEEEEBSCTTT-CCBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTT
T ss_pred             CEEEEEecCCCCC-CcccC---HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccc
Confidence            8999999999999 89999   99999999999      99999999998321           0124788999999999


Q ss_pred             cCcc--eeEEeecCcccc
Q psy5413         268 LGAP--VGSILAGPEEFI  283 (285)
Q Consensus       268 l~~p--~gg~~~~~~~~i  283 (285)
                      +++|  .|++++.+++++
T Consensus       279 l~~p~g~G~~~~~~~~~l  296 (502)
T 3hbx_A          279 GLVYAGIGWVIWRNKEDL  296 (502)
T ss_dssp             TCCCSSCEEEEESSGGGS
T ss_pred             cCCCCCeEEEEEeCHHHh
Confidence            9663  344566666544

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.81  E-value=2.9e-20  Score=169.11  Aligned_cols=201  Identities=14%  Similarity=-0.023  Sum_probs=146.6

Q ss_pred             eeeeeccCCcCCC----cHHHHHHH--HhcccC----CCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHH--HHH
Q psy5413          67 RTVDIRSDTISKP----TMEMKNYM--FNCEVG----DDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGN--LIA  132 (285)
Q Consensus        67 ~~~~~~~~~~~~~----~~~v~~a~--~~~~~~----~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~--~~a  132 (285)
                      ..++|..+.+...    ++.+.+++  .+....    ...|+......+|++.++++++.+  .+++++|+++++  ..+
T Consensus        34 ~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~  113 (427)
T 3ppl_A           34 LKLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVI  113 (427)
T ss_dssp             CCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHH
T ss_pred             ceEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHH
Confidence            4578887776542    12455555  443332    246666667899999999999864  468899999999  477


Q ss_pred             HHHcccc-C----------CCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhccccccc
Q psy5413         133 IMTHCDR-R----------DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIH  201 (285)
Q Consensus       133 l~~~~~~-~----------g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~  201 (285)
                      +++++.. +          |++|++++++|.......         ...|.+++.++.++++ +|+++|+++++..    
T Consensus       114 ~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~---------~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~----  179 (427)
T 3ppl_A          114 SWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSIT---------ERFGFEMISVPMNEDG-PDMDAVEELVKNP----  179 (427)
T ss_dssp             HHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHH---------HHTTCEEEEEEEETTE-ECHHHHHHHTTST----
T ss_pred             HHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHH---------HHcCCEEEEeCCCCCC-CCHHHHHHHHhcC----
Confidence            7776631 4          899999888875543322         2348888888876554 8999999999531    


Q ss_pred             CCceEEEEEe-cccCCCCeeeCCHHHHHHHHHHH-HHcCCeEEEeCccCCh------------hhh-----cccCCeEEE
Q psy5413         202 CASTSLVCVE-NTHNYCGGTVLPMQWLRELKARC-QEHNIPVHMDGARLPL------------AEV-----CASVDTVMF  262 (285)
Q Consensus       202 ~~~~~~v~i~-~~~n~~gG~~~~~~~l~~i~~la-~~~gi~li~Dea~~~~------------~~~-----~~~~dv~~~  262 (285)
                        ++++|+++ +++||| |.+++.+++++|+++| ++||+++|+||+|..+            ..+     ..+.++++.
T Consensus       180 --~~~~v~~~p~~~NPt-G~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  256 (427)
T 3ppl_A          180 --QVKGMWVVPVFSNPT-GFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFT  256 (427)
T ss_dssp             --TEEEEEECCSSCTTT-CCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEE
T ss_pred             --CCeEEEECCCCCCCC-CccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEe
Confidence              78999877 599999 9999999999999999 9999999999998731            111     112345599


Q ss_pred             ecccccCc-ceeEEeecCccccc
Q psy5413         263 CLSKGLGA-PVGSILAGPEEFIQ  284 (285)
Q Consensus       263 s~sK~l~~-p~gg~~~~~~~~i~  284 (285)
                      |+||+++. .+.|+++.++++++
T Consensus       257 S~SK~~~~G~r~G~~~~~~~l~~  279 (427)
T 3ppl_A          257 STSKITLAGAGVSFFLTSAENRK  279 (427)
T ss_dssp             ESTTTSCTTSSCEEEECCHHHHH
T ss_pred             chhhccCcCccEEEEEcCHHHHH
Confidence            99998443 67788888877653

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.81  E-value=1.6e-19  Score=162.03  Aligned_cols=179  Identities=15%  Similarity=0.160  Sum_probs=135.6

Q ss_pred             CcHHHHHHHHhcccCCCCcc-CChhHHHHHHHH-HhHcC-CCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeee
Q psy5413          79 PTMEMKNYMFNCEVGDDVYL-EDPTCKELQEKA-AKLAG-KEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLW  155 (285)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~y~-~~~~~~~l~~~l-a~~~g-~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~  155 (285)
                      +.+++.+++.+.+... .|. ..+...++++.+ ++++| .+.+++++||++|+..++.++..++||+|+++.+.|..+.
T Consensus        14 ~~~~i~~a~~~~~~~~-~~~~~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~   92 (377)
T 3ju7_A           14 PVIEYLDELKEIDASH-IYTNYGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATP   92 (377)
T ss_dssp             CGGGGHHHHHHHHHHT-CCSSSCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHH
T ss_pred             CcHHHHHHHHHHHHcC-CcccCCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHH
Confidence            4567788877665432 244 367899999999 99999 7888999999999999999873369999999998887654


Q ss_pred             cccccccccccccccceeeeeeecC-CCCCCCHHHHHHHh-cccccccCCc--eEEEEEecccCCCCeeeCCHHHHHHHH
Q psy5413         156 EQGGASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKF-STADNIHCAS--TSLVCVENTHNYCGGTVLPMQWLRELK  231 (285)
Q Consensus       156 ~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i-~~~~~~~~~~--~~~v~i~~~~n~~gG~~~~~~~l~~i~  231 (285)
                      ...         ...|.+++.++.+ .++.+|++++++++ ++       +  +++|+.   +|++ |.+.+   +++|.
T Consensus        93 ~~~---------~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~-------~~~tk~v~~---~~~~-G~~~~---~~~i~  149 (377)
T 3ju7_A           93 LAA---------IWCGLEPYFIDISIDDWYMDKTVLWDKIEEL-------KEEVAIVVP---YATF-GSWMN---LEEYE  149 (377)
T ss_dssp             HHH---------HHTTCEEEEECBCTTTCSBCHHHHHHHHHHH-------GGGEEEECC---BCGG-GBCCC---CHHHH
T ss_pred             HHH---------HHcCCEEEEEecCCccCCcCHHHHHHHHhcC-------CCCceEEEE---ECCC-CCccC---HHHHH
Confidence            422         2348888888875 46789999999998 44       4  899884   4455 89999   89999


Q ss_pred             HHHHHcCCeEEEeCccC-Chh----hh-cccCCeEEEe--cccccCcceeEEeec-Cccc
Q psy5413         232 ARCQEHNIPVHMDGARL-PLA----EV-CASVDTVMFC--LSKGLGAPVGSILAG-PEEF  282 (285)
Q Consensus       232 ~la~~~gi~li~Dea~~-~~~----~~-~~~~dv~~~s--~sK~l~~p~gg~~~~-~~~~  282 (285)
                      ++|+ ||++||+|++|+ +..    .. ....|+.++|  .+|+++++.||+++. ++++
T Consensus       150 ~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~S~~~~K~l~~g~gG~~~~~~~~l  208 (377)
T 3ju7_A          150 ELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIYSFHATKPFGIGEGGLIYSKNEED  208 (377)
T ss_dssp             HHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEEECBTTSSSCCBSCEEEEESCHHH
T ss_pred             HHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEEECCCCCcCCCCCcEEEEECCHHH
Confidence            9999 999999999987 211    11 1225666655  569998877777765 4444

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.81  E-value=1.5e-19  Score=166.83  Aligned_cols=214  Identities=14%  Similarity=0.082  Sum_probs=132.0

Q ss_pred             cCCeeeeeccCCc----CCCcHHHHHHHHhccc-----CCCCccC---ChhHHHHHHHHHhHc--CCCcEEEcCChHHHH
Q psy5413          64 VNIRTVDIRSDTI----SKPTMEMKNYMFNCEV-----GDDVYLE---DPTCKELQEKAAKLA--GKEAAIFVPSGTMGN  129 (285)
Q Consensus        64 ~~~~~~~~~~~~~----~~~~~~v~~a~~~~~~-----~~~~y~~---~~~~~~l~~~la~~~--g~~~~~~~~~Gs~a~  129 (285)
                      .|++++||.++.+    ++.+|+|.+|+.++..     ....|+.   .+...++++.++++.  +.+.++|++||++|+
T Consensus        61 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~  140 (472)
T 1ohv_A           61 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSN  140 (472)
T ss_dssp             TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHH
T ss_pred             CCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHH
Confidence            4788999876543    5689999999988753     1123432   233344444455555  566789999999999


Q ss_pred             HHHHHHcccc------------------------CC---CeEEe-cCCcceeeeccccccccccccc----ccceeeeee
Q psy5413         130 LIAIMTHCDR------------------------RD---SEIIV-GDCSHIMLWEQGGASQTSVYSQ----IGRVLMRGV  177 (285)
Q Consensus       130 ~~al~~~~~~------------------------~g---~~vi~-~~~~h~~~~~~~~~~~~~~~~~----~~g~~~~~~  177 (285)
                      +.|+++++..                        +|   ++||+ ...||+++.....+.....+..    ..+...+.+
T Consensus       141 ~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  220 (472)
T 1ohv_A          141 ENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPF  220 (472)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECC
T ss_pred             HHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCC
Confidence            9999998411                        24   56666 4577877654322221000100    001111122


Q ss_pred             ecC--C---C--C-----CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeC
Q psy5413         178 TNQ--K---D--G-----TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDG  245 (285)
Q Consensus       178 ~~~--~---~--~-----~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~De  245 (285)
                      |..  +   .  .     ..|+++|+++|+++.. ...++++|++++++|++|..+.+.++|++|+++|++||++||+||
T Consensus       221 p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~-~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DE  299 (472)
T 1ohv_A          221 PRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRK-KKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDE  299 (472)
T ss_dssp             CCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHH-TTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CcccCccccccccchhHHHHHHHHHHHHHHhcCC-CCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeC
Confidence            210  0   0  0     1268899999875210 012689999999998884456789999999999999999999999


Q ss_pred             ccCChhh-----hcccCCe---E-EEecccc-cCcceeEEeecCccc
Q psy5413         246 ARLPLAE-----VCASVDT---V-MFCLSKG-LGAPVGSILAGPEEF  282 (285)
Q Consensus       246 a~~~~~~-----~~~~~dv---~-~~s~sK~-l~~p~gg~~~~~~~~  282 (285)
                      +|+++..     ..+..++   . +.++||+ ++   ||+++ ++++
T Consensus       300 v~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~l~---GG~~~-~~~~  342 (472)
T 1ohv_A          300 VQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMT---GGFFH-KEEF  342 (472)
T ss_dssp             TTTTTTTTSSSSGGGGGCCSSCCSEEEECGGGSS---EEEEE-CGGG
T ss_pred             cccCCCCCCCchhccccCCCCCCCEEEEcccccc---CCccC-chhh
Confidence            9884221     1222121   1 5688899 55   45665 5554

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.81  E-value=7.8e-20  Score=169.59  Aligned_cols=182  Identities=15%  Similarity=0.041  Sum_probs=135.7

Q ss_pred             CcHHHHHHHHhcccC-----CCCccCChhHH----HHHHHHHhHcCCC----cEEEcCChHHHHHHHHHHcccc----CC
Q psy5413          79 PTMEMKNYMFNCEVG-----DDVYLEDPTCK----ELQEKAAKLAGKE----AAIFVPSGTMGNLIAIMTHCDR----RD  141 (285)
Q Consensus        79 ~~~~v~~a~~~~~~~-----~~~y~~~~~~~----~l~~~la~~~g~~----~~~~~~~Gs~a~~~al~~~~~~----~g  141 (285)
                      +.+.+.+++.++...     ...|...+...    ++++.+++++|.+    .+++++||++|+..++++++..    +|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g  155 (497)
T 3mc6_A           76 GGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRG  155 (497)
T ss_dssp             CCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSC
T ss_pred             CchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCC
Confidence            446666666554331     12233344444    5556677777876    4699999999999999998631    35


Q ss_pred             ---CeEEecCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEEEecccCCC
Q psy5413         142 ---SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYC  217 (285)
Q Consensus       142 ---~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~  217 (285)
                         ++|+++.++|........         ..|.+++.++.++ ++.+|+++|+++|++       ++++|++++|+|++
T Consensus       156 ~~~~~Vi~~~~~h~~~~~~~~---------~~G~~~~~v~~~~~~~~~d~~~l~~~i~~-------~~~~v~~~~p~npt  219 (497)
T 3mc6_A          156 ITEPEIIAPVTAHAGFDKAAY---------YFGMKLRHVELDPTTYQVDLGKVKKFINK-------NTVLLVGSAPNFPH  219 (497)
T ss_dssp             CSSCEEEEETTSCHHHHHHHH---------HSCCEEEEECBCTTTCSBCTTTTGGGCCS-------SEEEEEEETTCTTT
T ss_pred             CCCceEEEeCCccHHHHHHHH---------HcCCeEEEEecCcccCcCCHHHHHHHHhh-------CCEEEEEECCCCCC
Confidence               789999999877654332         3488889998866 678999999999987       79999999999999


Q ss_pred             CeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------------hhcccCCeEEEecccccCc-ceeEEeecCc
Q psy5413         218 GGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------------EVCASVDTVMFCLSKGLGA-PVGSILAGPE  280 (285)
Q Consensus       218 gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------------~~~~~~dv~~~s~sK~l~~-p~gg~~~~~~  280 (285)
                       |.+.|   +++|+++|++||+++|+|++|++..                ....++|+++.+++|++++ +..|+++.++
T Consensus       220 -G~~~~---l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~  295 (497)
T 3mc6_A          220 -GIADD---IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRN  295 (497)
T ss_dssp             -CCCCS---CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSS
T ss_pred             -CcCCC---HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecC
Confidence             89999   9999999999999999999987221                1235689999999999755 3445555443

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.81  E-value=1.9e-19  Score=163.85  Aligned_cols=177  Identities=12%  Similarity=0.055  Sum_probs=127.2

Q ss_pred             CccCChhHHHHHHHHHhHc----CCC-----------cEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccccc
Q psy5413          96 VYLEDPTCKELQEKAAKLA----GKE-----------AAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGA  160 (285)
Q Consensus        96 ~y~~~~~~~~l~~~la~~~----g~~-----------~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~  160 (285)
                      .|+...+..++++.+++++    |.+           .+++++|+++|+..++++++ ++||+|++..++|.......  
T Consensus        73 ~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~--  149 (425)
T 2r2n_A           73 QYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII-NPGDNVLLDEPAYSGTLQSL--  149 (425)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHHHH--
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC-CCCCEEEEeCCCcHHHHHHH--
Confidence            3444444556777776654    532           46899999999999999987 58999999888775543322  


Q ss_pred             ccccccccccceeeeeeecCCCCCCCHHHHHHHhccccc-----ccCCceEEEEE-ecccCCCCeeeCCHHHHHHHHHHH
Q psy5413         161 SQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADN-----IHCASTSLVCV-ENTHNYCGGTVLPMQWLRELKARC  234 (285)
Q Consensus       161 ~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~-----~~~~~~~~v~i-~~~~n~~gG~~~~~~~l~~i~~la  234 (285)
                             ...|.+++.++.+++ .+|+++|++++++...     ....++++|++ .+++||| |.+++.+++++|+++|
T Consensus       150 -------~~~g~~~~~v~~~~~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPt-G~~~~~~~l~~l~~~a  220 (425)
T 2r2n_A          150 -------HPLGCNIINVASDES-GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPT-GNSLTSERKKEIYELA  220 (425)
T ss_dssp             -------GGGTCEEEEECEETT-EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTT-CCCCCHHHHHHHHHHH
T ss_pred             -------HHcCCEEEEeCcCCC-CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCC-CCcCCHHHHHHHHHHH
Confidence                   234888888887544 4899999999973110     01126788877 5699999 8999999999999999


Q ss_pred             HHcCCeEEEeCccCCh----------hhhc-ccCCeEEEecccccCc-ceeEEeecCccccc
Q psy5413         235 QEHNIPVHMDGARLPL----------AEVC-ASVDTVMFCLSKGLGA-PVGSILAGPEEFIQ  284 (285)
Q Consensus       235 ~~~gi~li~Dea~~~~----------~~~~-~~~dv~~~s~sK~l~~-p~gg~~~~~~~~i~  284 (285)
                      ++||+++|+||+|..+          ..+. .+..+++.|+||+++. .+.|+++.++++++
T Consensus       221 ~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~  282 (425)
T 2r2n_A          221 RKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIE  282 (425)
T ss_dssp             HHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHH
T ss_pred             HHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHH
Confidence            9999999999998721          1111 1223558999999974 45678887777654

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.80  E-value=9e-19  Score=160.64  Aligned_cols=183  Identities=15%  Similarity=-0.014  Sum_probs=137.3

Q ss_pred             CcHHHHHHHHhcccC-CCCccCChhHH----HHHHHHHhHcCCCc-------EEEcCChHHHHHHHHHHccc-------c
Q psy5413          79 PTMEMKNYMFNCEVG-DDVYLEDPTCK----ELQEKAAKLAGKEA-------AIFVPSGTMGNLIAIMTHCD-------R  139 (285)
Q Consensus        79 ~~~~v~~a~~~~~~~-~~~y~~~~~~~----~l~~~la~~~g~~~-------~~~~~~Gs~a~~~al~~~~~-------~  139 (285)
                      .+|.+.+++.+.... ...|...+...    ++++.+++++|.+.       +++++|||+|+..++.+++.       .
T Consensus        54 ~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~  133 (452)
T 2dgk_A           54 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA  133 (452)
T ss_dssp             CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            567888888866542 23344445544    45555677888652       68999999999999988752       1


Q ss_pred             CC-----CeEEecCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         140 RD-----SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       140 ~g-----~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      +|     ++|++++ +|.++.....         ..|.+++.++.++ ++.+|+++|+++|++       ++++|+++++
T Consensus       134 ~G~~~~~~~vi~~~-~h~~~~~~~~---------~~G~~v~~v~~~~~~~~~d~~~l~~~i~~-------~t~~v~~~~~  196 (452)
T 2dgk_A          134 AGKPTDKPNLVCGP-VQICWHKFAR---------YWDVELREIPMRPGQLFMDPKRMIEACDE-------NTIGVVPTFG  196 (452)
T ss_dssp             TTCCCSCCEEEESS-CCHHHHHHHH---------HTTCEEEECCCBTTBCSCCHHHHHHHCCT-------TEEEEECBBS
T ss_pred             cCCCCCCcEEEECC-CcHHHHHHHH---------HcCceEEEEecCCCCCeECHHHHHHHHhh-------CCEEEEEEcC
Confidence            44     4788888 8876655333         3488899998765 688999999999987       7899999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHc------CCeEEEeCccCChhh--------h---cccCCeEEEecccccCc-ceeEE
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEH------NIPVHMDGARLPLAE--------V---CASVDTVMFCLSKGLGA-PVGSI  275 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~------gi~li~Dea~~~~~~--------~---~~~~dv~~~s~sK~l~~-p~gg~  275 (285)
                      +|++ |.+.|   +++|+++|++|      |+|+|+|++|+....        .   ..++|++++++||++.+ +..|+
T Consensus       197 ~n~t-G~~~~---l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~  272 (452)
T 2dgk_A          197 VTYT-GNYEF---PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGW  272 (452)
T ss_dssp             CTTT-CBBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEE
T ss_pred             CcCC-cccCC---HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEE
Confidence            9999 89999   99999999995      999999999984211        1   23678889999998755 45566


Q ss_pred             eec-Cccc
Q psy5413         276 LAG-PEEF  282 (285)
Q Consensus       276 ~~~-~~~~  282 (285)
                      ++. ++++
T Consensus       273 ~~~~~~~~  280 (452)
T 2dgk_A          273 VIWRDEEA  280 (452)
T ss_dssp             EEESSGGG
T ss_pred             EEEcCHHH
Confidence            655 4444

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.80  E-value=8.7e-19  Score=157.46  Aligned_cols=180  Identities=17%  Similarity=0.122  Sum_probs=136.2

Q ss_pred             CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHc------cccCCCeEEecCCcce
Q psy5413          79 PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTH------CDRRDSEIIVGDCSHI  152 (285)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~------~~~~g~~vi~~~~~h~  152 (285)
                      .++++.+++.+.... ..|...+...++++.+++++|.+..+++++|++|+..+++++      ..++|++|+++.+.|.
T Consensus        13 ~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~   91 (390)
T 3b8x_A           13 WDDLEYKAIQSVLDS-KMFTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWS   91 (390)
T ss_dssp             CCHHHHHHHHHHHHH-TCCSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCH
T ss_pred             CCHHHHHHHHHHHHc-CCCCCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcH
Confidence            577888888776643 235567889999999999999988899999999999999997      1357899999888876


Q ss_pred             eeecccccccccccccccceeeeeeecCCC-CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHH
Q psy5413         153 MLWEQGGASQTSVYSQIGRVLMRGVTNQKD-GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELK  231 (285)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~  231 (285)
                      ......         ...|.+++.++.+++ +.+|+++|++++++       ++++|+++++.    |.+.+   +++|.
T Consensus        92 ~~~~~~---------~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-------~~~~v~~~~~~----g~~~~---~~~i~  148 (390)
T 3b8x_A           92 TTYYPL---------QQYGLRVKFVDIDINTLNIDIESLKEAVTD-------STKAILTVNLL----GNPNN---FDEIN  148 (390)
T ss_dssp             HHHHHH---------HHTTCEEEEECBCTTTCSBCHHHHHHHCCT-------TEEEEEEECGG----GCCCC---HHHHH
T ss_pred             HHHHHH---------HHcCCEEEEEecCccccCcCHHHHHHHhCc-------CCeEEEEECCc----cChhh---HHHHH
Confidence            654422         234788888887654 78999999999987       78999997533    67777   99999


Q ss_pred             HHHHHcCCeEEEeCccC-Chhhhc--ccC--CeEEEe--cccccCcceeEEeecCc-cc
Q psy5413         232 ARCQEHNIPVHMDGARL-PLAEVC--ASV--DTVMFC--LSKGLGAPVGSILAGPE-EF  282 (285)
Q Consensus       232 ~la~~~gi~li~Dea~~-~~~~~~--~~~--dv~~~s--~sK~l~~p~gg~~~~~~-~~  282 (285)
                      ++|++||+++|+|++|+ +.....  .+.  |+.+++  .+|.++++.||+++.++ ++
T Consensus       149 ~l~~~~~~~li~D~a~~~g~~~~~~~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l  207 (390)
T 3b8x_A          149 KIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEI  207 (390)
T ss_dssp             HHHTTSCCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHH
T ss_pred             HHHHHcCCEEEEECcCcccCEECCcccccccceEEEEccCCCCCccCCceEEEeCCHHH
Confidence            99999999999999998 322211  122  444433  35666556778888765 44

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.80  E-value=9.2e-20  Score=165.72  Aligned_cols=199  Identities=15%  Similarity=0.007  Sum_probs=144.3

Q ss_pred             eeeeccCCcC----CCcHHHHHHHHhcc---cC--CCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHH--HHHHH
Q psy5413          68 TVDIRSDTIS----KPTMEMKNYMFNCE---VG--DDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGN--LIAIM  134 (285)
Q Consensus        68 ~~~~~~~~~~----~~~~~v~~a~~~~~---~~--~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~--~~al~  134 (285)
                      +++|..+.+.    ..++.+.+++.+..   .+  ...|.......+|++.++++++.+  .+++++|+++++  ..++.
T Consensus        34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~  113 (422)
T 3d6k_A           34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISW  113 (422)
T ss_dssp             CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHH
T ss_pred             eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHH
Confidence            5888888775    34557888876553   12  236766666899999999999865  468888888887  55666


Q ss_pred             HccccC------------CCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccC
Q psy5413         135 THCDRR------------DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHC  202 (285)
Q Consensus       135 ~~~~~~------------g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~  202 (285)
                      ++. .+            +++|+++.++|.......         ...|.+++.++.++++ +|+++|++++++.     
T Consensus       114 ~l~-~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~---------~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~-----  177 (422)
T 3d6k_A          114 SYT-WGNNDSSRPWSAEEKVKWLCPVPGYDRHFTIT---------EHFGFEMINVPMTDEG-PDMGVVRELVKDP-----  177 (422)
T ss_dssp             HHH-HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHH---------HHHTCEEEEEEEETTE-ECHHHHHHHHTST-----
T ss_pred             Hhc-CcccccccccccCCCCEEEEeCCccHHHHHHH---------HHcCCEEEecCCCCCC-CCHHHHHHHHhcC-----
Confidence            655 34            336888877765443321         2348888888875554 8999999999752     


Q ss_pred             CceEEEE-EecccCCCCeeeCCHHHHHHHHHHHH-HcCCeEEEeCccCC--hh-------hh--------cccCCeEEEe
Q psy5413         203 ASTSLVC-VENTHNYCGGTVLPMQWLRELKARCQ-EHNIPVHMDGARLP--LA-------EV--------CASVDTVMFC  263 (285)
Q Consensus       203 ~~~~~v~-i~~~~n~~gG~~~~~~~l~~i~~la~-~~gi~li~Dea~~~--~~-------~~--------~~~~dv~~~s  263 (285)
                       ++++|+ +++++||| |.+++.+++++|+++|+ +||+++|+||+|..  +.       .+        .....+++.|
T Consensus       178 -~~~~v~~~~~~~NPt-G~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S  255 (422)
T 3d6k_A          178 -QVKGMWTVPVFGNPT-GVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSS  255 (422)
T ss_dssp             -TEEEEEECCSSCTTT-CCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEE
T ss_pred             -CCeEEEEcCCCCCCC-CCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcC
Confidence             688888 57799999 89999999999999999 99999999999861  21       11        1122355999


Q ss_pred             cccccC-cceeEEeecCccccc
Q psy5413         264 LSKGLG-APVGSILAGPEEFIQ  284 (285)
Q Consensus       264 ~sK~l~-~p~gg~~~~~~~~i~  284 (285)
                      +||+++ |.+.|+++.++++++
T Consensus       256 ~SK~~~~GlriG~~~~~~~l~~  277 (422)
T 3d6k_A          256 TSKITHAGSGVSFFASSKENIE  277 (422)
T ss_dssp             STTTSCTTSSCEEEECCHHHHH
T ss_pred             hhhhcCcccceEEEEeCHHHHH
Confidence            999733 356788888877654

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.79  E-value=1e-19  Score=161.13  Aligned_cols=185  Identities=11%  Similarity=0.075  Sum_probs=132.9

Q ss_pred             cCCCcHHHHHHHHhcccCCC--C--cc--CChhHHHHHHHHHhHcCCC---cEEEcCChHHHHHHHHHHccccCCCeEEe
Q psy5413          76 ISKPTMEMKNYMFNCEVGDD--V--YL--EDPTCKELQEKAAKLAGKE---AAIFVPSGTMGNLIAIMTHCDRRDSEIIV  146 (285)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~--~--y~--~~~~~~~l~~~la~~~g~~---~~~~~~~Gs~a~~~al~~~~~~~g~~vi~  146 (285)
                      +...++++++++.+......  .  +.  ..+...++++.+++++|..   .+++++||++|+..++.++. ++ +.+++
T Consensus        12 p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~-~~-~~i~~   89 (362)
T 3ffr_A           12 PSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV-EK-KSFHC   89 (362)
T ss_dssp             SCCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC-SS-EEEEE
T ss_pred             CcCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc-CC-cEEEE
Confidence            35567788866655443211  1  11  1244678899999998763   36899999999999999987 35 43444


Q ss_pred             cCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHH
Q psy5413         147 GDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW  226 (285)
Q Consensus       147 ~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~  226 (285)
                      ..++|...  .....      ...|.+++.++.++++.+|+++|+  +++       ++++|++++++|++ |.++|   
T Consensus        90 ~~~~~~~~--~~~~~------~~~g~~~~~v~~~~~~~~d~~~l~--~~~-------~~~~v~~~~~~npt-G~~~~---  148 (362)
T 3ffr_A           90 VNGSFSKR--FYEFA------GELGREAYKEEAAFGKGFYPADIT--VPA-------DAEIICLTHNETSS-GVSMP---  148 (362)
T ss_dssp             ECSHHHHH--HHHHH------HHTTCEEEEEECCTTCCCCGGGCC--CCT-------TCCEEEEESEETTT-TEECC---
T ss_pred             cCcHHHHH--HHHHH------HHhCCCeEEEecCCCCCCCHHHHh--ccC-------CccEEEEEcCCCCc-ceeCC---
Confidence            44444311  11122      345888888888677788999988  555       79999999999999 99999   


Q ss_pred             HHHHHHHHHHc-CCeEEEeCccCChh-hh-cccCCeEEEecccccCc-ceeEEeecCcccc
Q psy5413         227 LRELKARCQEH-NIPVHMDGARLPLA-EV-CASVDTVMFCLSKGLGA-PVGSILAGPEEFI  283 (285)
Q Consensus       227 l~~i~~la~~~-gi~li~Dea~~~~~-~~-~~~~dv~~~s~sK~l~~-p~gg~~~~~~~~i  283 (285)
                      +++|.++|++| |+++|+|+++.... .. ...+|+++.++||++++ +-.|+++.+++++
T Consensus       149 l~~i~~la~~~p~~~li~D~a~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~g~~~~~~~~~  209 (362)
T 3ffr_A          149 VEDINTFRDKNKDALIFVDAVSSLPYPKFDWTKIDSVFFSVQKCFGLPAGLGVWILNDRVI  209 (362)
T ss_dssp             HHHHTTSGGGSTTSEEEEECTTTTTSSCCCTTSCSEEEEETTSTTCCCSCCEEEEEEHHHH
T ss_pred             HHHHHHHHHhCCCCEEEEecccccCCcccChhHCcEEEEecccccCCCCceEEEEECHHHH
Confidence            99999999999 99999999988211 11 12389999999999995 4447777777654

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.79  E-value=2.2e-19  Score=158.10  Aligned_cols=186  Identities=13%  Similarity=0.075  Sum_probs=136.3

Q ss_pred             eeeeeccCCcC-CCcHHHHHHHHhccc--CCCCccCChhHHHHHHHHHhHcC---C--CcEEEcCChHHHHHHHHHHccc
Q psy5413          67 RTVDIRSDTIS-KPTMEMKNYMFNCEV--GDDVYLEDPTCKELQEKAAKLAG---K--EAAIFVPSGTMGNLIAIMTHCD  138 (285)
Q Consensus        67 ~~~~~~~~~~~-~~~~~v~~a~~~~~~--~~~~y~~~~~~~~l~~~la~~~g---~--~~~~~~~~Gs~a~~~al~~~~~  138 (285)
                      ++++|.++... .+++++.+++.+...  +...|.. +...++++.++++++   .  +.+++++||++++..+++++  
T Consensus        20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~~--   96 (335)
T 1uu1_A           20 DKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYD-SPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF--   96 (335)
T ss_dssp             CSEEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCCC-SSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHHS--
T ss_pred             cceECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-CchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHHh--
Confidence            56889876664 468899999988762  2334543 348899999999998   4  45789999999999999986  


Q ss_pred             cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCC
Q psy5413         139 RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCG  218 (285)
Q Consensus       139 ~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~g  218 (285)
                        |++|+++ ++|......   .      ...|.+++.++.++++.+|++++     +       ++++|++++|+||| 
T Consensus        97 --gd~Vl~~-p~y~~~~~~---~------~~~g~~~~~v~~~~~~~~d~~~l-----~-------~~~~v~l~~p~npt-  151 (335)
T 1uu1_A           97 --DRSVFFP-PTYSCYRIF---A------KAVGAKFLEVPLTKDLRIPEVNV-----G-------EGDVVFIPNPNNPT-  151 (335)
T ss_dssp             --SEEEECS-SSCHHHHHH---H------HHHTCEEEECCCCTTSCCCCCCC-----C-------TTEEEEEESSCTTT-
T ss_pred             --CCcEEEC-CCcHHHHHH---H------HHcCCeEEEeccCCCCCCCHHHc-----C-------CCCEEEEeCCCCCC-
Confidence              7889988 776544321   1      23478888888755556776665     3       67999999999999 


Q ss_pred             eeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcc--cCCeEEEecccccCc--ceeEEeecCccccc
Q psy5413         219 GTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCA--SVDTVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       219 G~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~--~~dv~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      |.++|.+++++|+++|   | ++|+||+|..+     .....  ..++++.|+||+++.  .+.|+++.++++++
T Consensus       152 G~~~~~~~l~~l~~~~---~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~  222 (335)
T 1uu1_A          152 GHVFEREEIERILKTG---A-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFID  222 (335)
T ss_dssp             CCCCCHHHHHHHHHTT---C-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHHHH
T ss_pred             CCCCCHHHHHHHHHhC---C-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHHHH
Confidence            8999976666666655   8 89999998732     22112  234669999999873  45677777777653

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.79  E-value=5.8e-19  Score=163.97  Aligned_cols=177  Identities=12%  Similarity=0.115  Sum_probs=128.8

Q ss_pred             CCccCChhHHHHHHHHHhHc-----CC----CcEEEcCChHHHHHHHHHHccccCCC----eEEecCCcceeeecccccc
Q psy5413          95 DVYLEDPTCKELQEKAAKLA-----GK----EAAIFVPSGTMGNLIAIMTHCDRRDS----EIIVGDCSHIMLWEQGGAS  161 (285)
Q Consensus        95 ~~y~~~~~~~~l~~~la~~~-----g~----~~~~~~~~Gs~a~~~al~~~~~~~g~----~vi~~~~~h~~~~~~~~~~  161 (285)
                      ..|.......++++.+++++     |.    +.+++++|+++++..++.+++ .+|+    .|+++.+.|.......   
T Consensus       123 ~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~-~~gd~~~d~Vlv~~p~y~~~~~~~---  198 (498)
T 3ihj_A          123 GSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV-SGGGKSRTGVMIPIPQYPLYSAVI---  198 (498)
T ss_dssp             -----CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC-CCCGGGSEEEEEEESCCTHHHHHH---
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc-CCCCCCCCEEEEeCCCchhHHHHH---
Confidence            45766666777888888775     33    456999999999999999887 4654    8999888876543322   


Q ss_pred             cccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCC
Q psy5413         162 QTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNI  239 (285)
Q Consensus       162 ~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi  239 (285)
                            ...|.+++.++.++  ++.+|+++|++++++...  ..++++|++++|+||| |.+++.+++++|+++|++||+
T Consensus       199 ------~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~--~~~~k~i~l~np~NPT-G~v~s~~~l~~i~~la~~~~~  269 (498)
T 3ihj_A          199 ------SELDAIQVNYYLDEENCWALNVNELRRAVQEAKD--HCDPKVLCIINPGNPT-GQVQSRKCIEDVIHFAWEEKL  269 (498)
T ss_dssp             ------HHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTT--TSEEEEEEEESSCTTT-CCCCCHHHHHHHHHHHHHHTC
T ss_pred             ------HHcCCEEEEeeccccccCCCCHHHHHHHHHhhhc--cCCCeEEEEECCCCCC-CCcCCHHHHHHHHHHHHHcCc
Confidence                  23478888887654  357899999999976311  1258999999999999 999999999999999999999


Q ss_pred             eEEEeCccCCh-----------hhhc--------ccCCe-EEEeccccc-C--cceeEEee---cCccccc
Q psy5413         240 PVHMDGARLPL-----------AEVC--------ASVDT-VMFCLSKGL-G--APVGSILA---GPEEFIQ  284 (285)
Q Consensus       240 ~li~Dea~~~~-----------~~~~--------~~~dv-~~~s~sK~l-~--~p~gg~~~---~~~~~i~  284 (285)
                      ++|+||+|..+           ..+.        ....+ ++.|+||.+ |  |.++|+++   .++++++
T Consensus       270 ~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~  340 (498)
T 3ihj_A          270 FLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKG  340 (498)
T ss_dssp             EEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHH
T ss_pred             EEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHH
Confidence            99999998721           1111        11223 488999998 3  57788886   5666553

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.78  E-value=1.1e-18  Score=158.01  Aligned_cols=200  Identities=11%  Similarity=0.043  Sum_probs=144.8

Q ss_pred             CeeeeeccCCc---C---CCcHHHHHHHHhcc---cCCCCccCChhHHHHHHHHHhHc-CC-------Cc--EEEcCChH
Q psy5413          66 IRTVDIRSDTI---S---KPTMEMKNYMFNCE---VGDDVYLEDPTCKELQEKAAKLA-GK-------EA--AIFVPSGT  126 (285)
Q Consensus        66 ~~~~~~~~~~~---~---~~~~~v~~a~~~~~---~~~~~y~~~~~~~~l~~~la~~~-g~-------~~--~~~~~~Gs  126 (285)
                      ..+++|+.+.+   .   ...+.+.++.. ..   .+...|.+..+..+|++.+++++ +.       +.  ++.+.+|+
T Consensus        29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~  107 (405)
T 3k7y_A           29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGT  107 (405)
T ss_dssp             SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHH
T ss_pred             cCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchH
Confidence            35688887753   1   24568888765 32   13457887788899999999986 21       22  37889999


Q ss_pred             HHHHHHHHHccc-cCCCeEEecCCcceeeecccccccccccccccceeeeeeec-C-CCCCCCHHHHHHHhcccccccCC
Q psy5413         127 MGNLIAIMTHCD-RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN-Q-KDGTFDLDEMEAKFSTADNIHCA  203 (285)
Q Consensus       127 ~a~~~al~~~~~-~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~-~~~~~d~~~l~~~i~~~~~~~~~  203 (285)
                      +|+..++.++.. .+ |+|+++++++.......         ...|.+++.++. + .++.+|++++++++++.     .
T Consensus       108 ~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~---------~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~-----~  172 (405)
T 3k7y_A          108 GAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMI---------ESRGFNLKYINFFDYNLIDINYDLFLNDLRNI-----P  172 (405)
T ss_dssp             HHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHH---------HTTTCEEEEECCEETTTTEECHHHHHHHHHHS-----C
T ss_pred             HHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHH---------HHcCCeEEEEeccccccCCcCHHHHHHHHHhC-----C
Confidence            999999988763 16 99999988875544322         244888888886 2 24678999999999751     1


Q ss_pred             ceEEEEEecc-cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh------------hcc-cCCeE-EEeccccc
Q psy5413         204 STSLVCVENT-HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE------------VCA-SVDTV-MFCLSKGL  268 (285)
Q Consensus       204 ~~~~v~i~~~-~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~------------~~~-~~dv~-~~s~sK~l  268 (285)
                      ++++|+++++ |||| |.+++.+++++|+++|++||+++|+||+|..+..            +.. +..++ +.|+||.+
T Consensus       173 ~~~~i~l~~~~~NPT-G~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  251 (405)
T 3k7y_A          173 NGSSVILQISCYNPC-SVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNM  251 (405)
T ss_dssp             SSCEEEECCSSCTTT-CCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTS
T ss_pred             CCeEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccC
Confidence            4678888775 8999 9999999999999999999999999999873221            112 22344 89999998


Q ss_pred             C--cceeEEee---cCccc
Q psy5413         269 G--APVGSILA---GPEEF  282 (285)
Q Consensus       269 ~--~p~gg~~~---~~~~~  282 (285)
                      +  |.+.|+++   .++++
T Consensus       252 ~l~GlRiG~~~~~~~~~~~  270 (405)
T 3k7y_A          252 SLYGERAGALHIVCKNQEE  270 (405)
T ss_dssp             CCTTTTEEEEEEECSSHHH
T ss_pred             CCccccceEEEEEeCCHHH
Confidence            7  46777753   35543

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.76  E-value=2.6e-18  Score=154.01  Aligned_cols=167  Identities=14%  Similarity=0.139  Sum_probs=123.3

Q ss_pred             hhHHHHHHHHHhHcCCCc-EEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccc--eeeeee
Q psy5413         101 PTCKELQEKAAKLAGKEA-AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGR--VLMRGV  177 (285)
Q Consensus       101 ~~~~~l~~~la~~~g~~~-~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g--~~~~~~  177 (285)
                      +...++++.+++++|.+. .+|++|||+|+++++.. + .+||+|++.+..|.... ...+.      ...|  .+++.+
T Consensus        35 ~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~~-~-~~gd~vi~~~~~~~~~~-~~~~~------~~~g~~~~~~~~  105 (379)
T 3ke3_A           35 EVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVARQ-L-TIDEDCLIIRNGWFSYR-WTQIL------EKGKFAKSSTVL  105 (379)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHH-H-CTTCEEEEEECSHHHHH-HHHHH------HHHCCSSEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHHh-C-CCCCeEEEEeCCchhHH-HHHHH------HHhCCCCceEEE
Confidence            356788899999998865 47889999999999865 4 48999888765543221 11121      1223  355555


Q ss_pred             ecCC---------CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413         178 TNQK---------DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL  248 (285)
Q Consensus       178 ~~~~---------~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~  248 (285)
                      +.++         ...+|++++++++++.      ++++|++.+++|++ |.++|.+++++|+++|++||+++|+|++++
T Consensus       106 ~~~~~g~~~~~~~~~~~d~~~l~~~i~~~------~~~~v~~~~~~~~~-G~~~~~~~l~~i~~~~~~~~~~li~D~~~~  178 (379)
T 3ke3_A          106 TAERTEDTEAPKPFAPVDIETAVAKIKED------KSAIVYAPHVETSS-GIILSEEYIKALSEAVHSVGGLLVIDCIAS  178 (379)
T ss_dssp             ECEESSCCSSCCCEECCCHHHHHHHHHHH------TCSEEEEESEETTT-TEECCHHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             eccccccccccCCCCCCCHHHHHHHHhhc------CCcEEEEEeecCCC-ceeCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence            5422         1257999999999642      67899999999998 899999999999999999999999999987


Q ss_pred             Chh---hhcccCCeEEEecccccCcce-eEEeecCcccc
Q psy5413         249 PLA---EVCASVDTVMFCLSKGLGAPV-GSILAGPEEFI  283 (285)
Q Consensus       249 ~~~---~~~~~~dv~~~s~sK~l~~p~-gg~~~~~~~~i  283 (285)
                      +..   ....++|+++.+++|++++|. .|+++.+++++
T Consensus       179 g~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~  217 (379)
T 3ke3_A          179 GCVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAI  217 (379)
T ss_dssp             TTCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHH
T ss_pred             CCccccccccCCCEEEecchhhcCCCCceEEEEECHHHH
Confidence            211   112478999999999998854 47777777654

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.75  E-value=4.4e-18  Score=156.34  Aligned_cols=166  Identities=20%  Similarity=0.166  Sum_probs=123.0

Q ss_pred             hHHHHHHHHHhHcCCCc-EEEcCChH-HHHHHHHHHccc-cCCCeEEecCCcceeeecccccccccccccccceeeeeee
Q psy5413         102 TCKELQEKAAKLAGKEA-AIFVPSGT-MGNLIAIMTHCD-RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT  178 (285)
Q Consensus       102 ~~~~l~~~la~~~g~~~-~~~~~~Gs-~a~~~al~~~~~-~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~  178 (285)
                      ...++++.+++++|.+. ++++++|+ .++..++.++.. .+++.|+++...|.+......         ..|.+++.++
T Consensus       134 ~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~---------~~G~~~~~v~  204 (456)
T 2z67_A          134 LTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVS---------FVGMNMRLVE  204 (456)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH---------HTTCEEEEEC
T ss_pred             HHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHH---------HcCCCceEEE
Confidence            35678899999999875 78999999 577767776542 156678878888877655322         3477777766


Q ss_pred             c---CCCCCCCHHHHHHHh-cccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----
Q psy5413         179 N---QKDGTFDLDEMEAKF-STADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----  250 (285)
Q Consensus       179 ~---~~~~~~d~~~l~~~i-~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----  250 (285)
                      .   ++++.+|+++|+++| ++.   ...++.+|+++.++|++ |.+.|   +++|+++|+++|+++|+||+|+..    
T Consensus       205 ~~~~~~~~~~d~~~l~~~i~~~~---~~~~~~~vv~~~~nn~t-G~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g~  277 (456)
T 2z67_A          205 TVLDGDRVYVPVEDIENAIKKEI---ELGNRPCVLSTLTFFPP-RNSDD---IVEIAKICENYDIPHIINGAYAIQNNYY  277 (456)
T ss_dssp             CEEETTEEECCHHHHHHHHHHHH---HTTCCEEEEEESSCCTT-BCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHH
T ss_pred             EeccCCCCCcCHHHHHHHHHHHh---hCCCeEEEEEeCCCCCC-CCcCC---HHHHHHHHHHcCCcEEEECcchHHHHHh
Confidence            4   456789999999999 420   01167888899999999 99999   999999999999999999997721    


Q ss_pred             hhh-----cccCCeEEEecccccCcc-eeEEeec-Ccccc
Q psy5413         251 AEV-----CASVDTVMFCLSKGLGAP-VGSILAG-PEEFI  283 (285)
Q Consensus       251 ~~~-----~~~~dv~~~s~sK~l~~p-~gg~~~~-~~~~i  283 (285)
                      ...     ..++|++++++||++++| .+|+++. +++++
T Consensus       278 ~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~  317 (456)
T 2z67_A          278 LEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFI  317 (456)
T ss_dssp             HHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHH
T ss_pred             hHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHH
Confidence            111     117899999999997764 4566666 55554

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.75  E-value=2e-18  Score=158.24  Aligned_cols=162  Identities=17%  Similarity=0.176  Sum_probs=119.6

Q ss_pred             CccCChhHHHHHHHHHhHcCCCc-EEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceee
Q psy5413          96 VYLEDPTCKELQEKAAKLAGKEA-AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLM  174 (285)
Q Consensus        96 ~y~~~~~~~~l~~~la~~~g~~~-~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~  174 (285)
                      .+.+.....++++.+++ +|.+. .++++||++|+..++++++ ++|++|+++.++|.+.......         .|.++
T Consensus        52 ~~~~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~-~~gd~Vlv~~~~h~s~~~~~~~---------~G~~~  120 (446)
T 2x3l_A           52 LHHPEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFS-QKKGDILMARNVHKSVLHALDI---------SQQEG  120 (446)
T ss_dssp             TTSCSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTT-TSSSCEEECTTCCHHHHHHHHH---------HTCCE
T ss_pred             ccCcchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhc-CCCCEEEEecCccHHHHHHHHH---------cCCeE
Confidence            44556678999999999 99865 4677778899999999987 5899999999998766543222         37777


Q ss_pred             eeeec--CCC----CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413         175 RGVTN--QKD----GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL  248 (285)
Q Consensus       175 ~~~~~--~~~----~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~  248 (285)
                      +.++.  +++    +.+|+++|   +.+       ++++|+++++++ + |.++|   +++|+++|++||+++|+||+|+
T Consensus       121 ~~v~~~~~~~~~~~~~~d~~~l---~~~-------~~~~v~~~~~n~-~-G~~~~---l~~I~~l~~~~~~~livDea~~  185 (446)
T 2x3l_A          121 HFIETHQSPLTNHYNKVNLSRL---NND-------GHKLVVLTYPNY-Y-GETFN---VEEVIKSLHQLNIPVLIDEAHG  185 (446)
T ss_dssp             EECEEEECTTTSSEEEEEC-----------------CCEEEEESSCT-T-SCCCC---HHHHHHHHHHTTCCEEEECTTC
T ss_pred             EEEeCeeccccCcCCCCCHHHH---cCC-------CceEEEEECCCC-C-eEecC---HHHHHHHHHhcCCeEEEcchhh
Confidence            77765  443    45677777   334       689999999554 6 89999   9999999999999999999987


Q ss_pred             C-h-------hhhcccCCeEEEecccccCc-ceeEEeecCcccc
Q psy5413         249 P-L-------AEVCASVDTVMFCLSKGLGA-PVGSILAGPEEFI  283 (285)
Q Consensus       249 ~-~-------~~~~~~~dv~~~s~sK~l~~-p~gg~~~~~~~~i  283 (285)
                      . +       .....++|+++.|+||++++ ..+|++..+++++
T Consensus       186 ~~~~f~~~~~~~~~~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i  229 (446)
T 2x3l_A          186 AHFGLQGFPDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAP  229 (446)
T ss_dssp             TTTTSTTSCCCGGGGTCSEEEECHHHHSSSCTTCEEEEEETTCT
T ss_pred             hhhccCCCCCChHHcCCCEEEECCccccccccccEEEEEcCCcC
Confidence            4 1       11223679999999998877 3457777766654

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.74  E-value=1.2e-18  Score=154.35  Aligned_cols=189  Identities=10%  Similarity=0.107  Sum_probs=131.7

Q ss_pred             eeeeccCCcCCCcHHHHHHHHhcccC-----CCCcc-------CChhHHHHHHHHHhHcCCC---cEEEcCCh-HHHHHH
Q psy5413          68 TVDIRSDTISKPTMEMKNYMFNCEVG-----DDVYL-------EDPTCKELQEKAAKLAGKE---AAIFVPSG-TMGNLI  131 (285)
Q Consensus        68 ~~~~~~~~~~~~~~~v~~a~~~~~~~-----~~~y~-------~~~~~~~l~~~la~~~g~~---~~~~~~~G-s~a~~~  131 (285)
                      ++++..+. ...++.+++++.+....     ...|.       ..+...++++.+++++|.+   .+++++|+ ++|+..
T Consensus         4 ~~~~~~g~-~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~   82 (360)
T 1w23_A            4 VFNFNAGP-SALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTM   82 (360)
T ss_dssp             CEECCSSS-CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred             eEeecCCC-cCCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHH
Confidence            45555554 46788999999877642     11221       2234778999999999975   45788887 999999


Q ss_pred             HHHHcccc--CCCeEEecCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHH-HhcccccccCCceEE
Q psy5413         132 AIMTHCDR--RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEA-KFSTADNIHCASTSL  207 (285)
Q Consensus       132 al~~~~~~--~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~-~i~~~~~~~~~~~~~  207 (285)
                      ++..+..+  +|+.|+++..+|.+..    ..      ...| +++.++.++ ++.+|++++++ ++++       ++++
T Consensus        83 ~~~~l~~~~~~g~~vi~~~~~~~~~~----~~------~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~-------~~k~  144 (360)
T 1w23_A           83 LPMNLLTKGTIGNYVLTGSWSEKALK----EA------KLLG-ETHIAASTKANSYQSIPDFSEFQLNE-------NDAY  144 (360)
T ss_dssp             HHHHHCCTTCEEEEEECSHHHHHHHH----HH------HTTS-EEEEEEECGGGTSCSCCCGGGCCCCT-------TEEE
T ss_pred             HHHHhcCCCCcccEEEecchhHHHHH----HH------HHhC-CeEEeecccccCcCCccchHhhccCC-------CCCE
Confidence            99887641  2455666666664321    12      2347 888888754 55578888988 7865       7999


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-h-hcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-E-VCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-~-~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      |++++++||+ |.+++  +|.      ++||+++|+||+|+... . -....|+++.|+||+++.+..|+++.++++++
T Consensus       145 v~~~~~~npt-G~~~~--~i~------~~~~~~li~D~a~~~~~~~~~~~~~di~~~s~sK~~~~~G~G~~~~~~~~~~  214 (360)
T 1w23_A          145 LHITSNNTIY-GTQYQ--NFP------EINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLN  214 (360)
T ss_dssp             EEEESEETTT-TEECS--SCC------CCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCTTCEEEEEEHHHHC
T ss_pred             EEEeCCCCCc-ceecc--ccc------ccCCceEEEechhhcCCCCcCcccCCEEEEEcccccCCCCcEEEEEcHHHHh
Confidence            9999999999 88877  233      28999999999988211 1 11234899999999998543377777776654

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.72  E-value=1.4e-17  Score=160.18  Aligned_cols=168  Identities=11%  Similarity=0.118  Sum_probs=122.4

Q ss_pred             CccCChhHHHHHHHHHhHcCCCcEEEcCCh-HHHHHHHHHHccccCCCeEEecCCcceeeecc-ccccccccccccccee
Q psy5413          96 VYLEDPTCKELQEKAAKLAGKEAAIFVPSG-TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVL  173 (285)
Q Consensus        96 ~y~~~~~~~~l~~~la~~~g~~~~~~~~~G-s~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~  173 (285)
                      .+++.....++++.+++++|.+..+++.+| ++|+.+++.+++ ++||+|+++.+.|.+.... ..+         .|.+
T Consensus       168 l~~~~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~-~pGD~VLv~~~~H~S~~~~~~~l---------~Ga~  237 (730)
T 1c4k_A          168 LLIHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALV-SNGDLVLFDRNNHKSVYNSALAM---------AGGR  237 (730)
T ss_dssp             TTTTBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHTTT---------TCCE
T ss_pred             ccCChHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHH---------CCCE
Confidence            444556789999999999999987666666 589999999887 6999999999999776553 223         3777


Q ss_pred             eeeeecCCC-----CCCCHHHH-----HHHhccc-cc-ccCCce-EEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCe
Q psy5413         174 MRGVTNQKD-----GTFDLDEM-----EAKFSTA-DN-IHCAST-SLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIP  240 (285)
Q Consensus       174 ~~~~~~~~~-----~~~d~~~l-----~~~i~~~-~~-~~~~~~-~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~  240 (285)
                      ++.++...+     +.+|+++|     +++|+++ .+ .+..++ ++|++++|+ ++ |.+.|   +++|+++|++||++
T Consensus       238 ~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn-~~-G~v~d---l~~I~~la~~~g~~  312 (730)
T 1c4k_A          238 PVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT-YD-GTIYN---AHEVVKRIGHLCDY  312 (730)
T ss_dssp             EEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC-TT-SEEEC---HHHHHHHHGGGBSE
T ss_pred             EEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCC-CC-CeecC---HHHHHHHHHHcCCe
Confidence            776654221     23577777     8888762 00 001112 899999985 66 89999   99999999999999


Q ss_pred             EEEeCccCC---hh-------hhcc---cCC----eEEEecccccCcce-eEEeec
Q psy5413         241 VHMDGARLP---LA-------EVCA---SVD----TVMFCLSKGLGAPV-GSILAG  278 (285)
Q Consensus       241 li~Dea~~~---~~-------~~~~---~~d----v~~~s~sK~l~~p~-gg~~~~  278 (285)
                      ||+||+|..   +.       .+..   ++|    +++.|+||+++++. ||++..
T Consensus       313 livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v  368 (730)
T 1c4k_A          313 IEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHK  368 (730)
T ss_dssp             EEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEE
T ss_pred             EEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEe
Confidence            999999862   11       1111   567    78999999999854 566633

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.69  E-value=2.1e-16  Score=153.11  Aligned_cols=168  Identities=16%  Similarity=0.113  Sum_probs=125.8

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCCh-HHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSG-TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~G-s~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~  177 (285)
                      +.....++++.+++++|.+..+++.+| ++|+.+++.+++ ++||.|+++.+.|.+.......         .|.+++.+
T Consensus       203 ~~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~-~~GD~Vlv~~~~h~s~~~~~~~---------~G~~~v~v  272 (755)
T 2vyc_A          203 HTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACM-TDNDVVVVDRNCHKSIEQGLML---------TGAKPVYM  272 (755)
T ss_dssp             TCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHHHHHH---------HCCEEEEE
T ss_pred             CccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhc-CCCCEEEECCCchHHHHHHHHH---------cCCEEEEE
Confidence            455688999999999999887655555 688999999987 6999999999999776553223         37787777


Q ss_pred             ecCCC-----CCC-----CHHHHHHHhccccc---ccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEe
Q psy5413         178 TNQKD-----GTF-----DLDEMEAKFSTADN---IHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD  244 (285)
Q Consensus       178 ~~~~~-----~~~-----d~~~l~~~i~~~~~---~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D  244 (285)
                      +...+     +.+     |+++|+++|+++.+   .++.++++|++++| |++ |.++|   +++|+++|++||++||+|
T Consensus       273 ~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~-G~v~d---l~~I~~ia~~~~~~livD  347 (755)
T 2vyc_A          273 VPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYD-GVCYN---AKEAQDLLEKTSDRLHFD  347 (755)
T ss_dssp             CCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTT-SEEEC---HHHHHHHHTTTCSEEEEE
T ss_pred             eCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCC-ceecC---HHHHHHHHHHcCCEEEEE
Confidence            65432     235     99999999975211   12334568999998 467 89999   999999999999999999


Q ss_pred             CccCCh---hh----hc--cc--CCe------EEEecccccCcce-eEEeecCcc
Q psy5413         245 GARLPL---AE----VC--AS--VDT------VMFCLSKGLGAPV-GSILAGPEE  281 (285)
Q Consensus       245 ea~~~~---~~----~~--~~--~dv------~~~s~sK~l~~p~-gg~~~~~~~  281 (285)
                      |+|+..   ..    ..  .+  +|+      ++.|+||+++++. ||++..+++
T Consensus       348 eA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~  402 (755)
T 2vyc_A          348 EAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREG  402 (755)
T ss_dssp             CTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECC
T ss_pred             CcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCc
Confidence            998721   11    01  34  676      7999999999964 677765544

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.69  E-value=4.1e-17  Score=144.93  Aligned_cols=181  Identities=9%  Similarity=-0.001  Sum_probs=122.6

Q ss_pred             cCCCcHHHHHHHHhcccCC----------CCcc--CChhHHHHHHHHHhHcCCC---cE-EEcCChHHHHHHHHHHcccc
Q psy5413          76 ISKPTMEMKNYMFNCEVGD----------DVYL--EDPTCKELQEKAAKLAGKE---AA-IFVPSGTMGNLIAIMTHCDR  139 (285)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~----------~~y~--~~~~~~~l~~~la~~~g~~---~~-~~~~~Gs~a~~~al~~~~~~  139 (285)
                      +...++++++++.+.....          ..++  ..+...++++.+++++|.+   .+ ++++||++|+..++.+++ +
T Consensus        12 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~-~   90 (362)
T 2c0r_A           12 PAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFL-K   90 (362)
T ss_dssp             SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHC-C
T ss_pred             CCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcC-C
Confidence            4668899999998766421          1111  1224678999999999976   34 566899999999999987 5


Q ss_pred             CCCeEEecCCcceeeecccccccccccccccceeeeeeecCC---CC-CCCHHHHHHHhcccccccCCceEEEEEecccC
Q psy5413         140 RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK---DG-TFDLDEMEAKFSTADNIHCASTSLVCVENTHN  215 (285)
Q Consensus       140 ~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~-~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n  215 (285)
                      +||+|++....|.... .....      ...| +++.++.+.   .+ .+|+++++  +++       ++++|++++++|
T Consensus        91 ~gd~vl~~~~~~~~~~-~~~~~------~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~-------~t~~v~~~~~~n  153 (362)
T 2c0r_A           91 EGQTANYVMTGSWASK-ALKEA------KLIG-DTHVAASSEASNYMTLPKLQEIQ--LQD-------NAAYLHLTSNET  153 (362)
T ss_dssp             TTCEEEEEECSHHHHH-HHHHH------HHHS-CEEEEEECGGGTTCSCCCGGGCC--CCT-------TEEEEEEESEET
T ss_pred             CCCeEEEEecCcHhHH-HHHHH------HHhC-CeEEEecccccccccCCCHHHcc--cCC-------CcCEEEEeCCcC
Confidence            8999877654432211 00111      2346 777776541   22 24655543  544       799999999999


Q ss_pred             CCCeee-CCHHHHHHHHHHHHHcCCeEEEeCccC-Chhhh-cccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         216 YCGGTV-LPMQWLRELKARCQEHNIPVHMDGARL-PLAEV-CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       216 ~~gG~~-~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~~-~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      +| |.+ .+   +++|      ||+++|+|++|. +.... ....|+++.|+||+++.+-.|+++.++++++
T Consensus       154 ~t-G~~~~~---l~~i------~~~~vivD~a~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~~~~  215 (362)
T 2c0r_A          154 IE-GAQFKA---FPDT------GSVPLIGDMSSDILSRPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVA  215 (362)
T ss_dssp             TT-TEECSS---CCCC------TTSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTCCSSCEEEEEEGGGSS
T ss_pred             cc-ceeccc---cccc------CCCEEEEEChhhccCCccchhHCcEEEEeccccccCcCcEEEEEcHHHHh
Confidence            99 665 55   6665      899999999988 21111 2234899999999997433388888887764

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.67  E-value=3.3e-16  Score=142.08  Aligned_cols=199  Identities=14%  Similarity=0.094  Sum_probs=136.3

Q ss_pred             eeeeccCCcCC------CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc-CCC----c--EEEcCChHHHHHHH
Q psy5413          68 TVDIRSDTISK------PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA-GKE----A--AIFVPSGTMGNLIA  132 (285)
Q Consensus        68 ~~~~~~~~~~~------~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~-g~~----~--~~~~~~Gs~a~~~a  132 (285)
                      -+||..+.+..      .-|.|++|.+.....  ...|.+..+..+|++.+++++ |..    .  .+.+.+||.|+..+
T Consensus        46 kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a  125 (420)
T 4h51_A           46 KANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLG  125 (420)
T ss_dssp             CEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHH
T ss_pred             CEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHH
Confidence            46776653221      346788886655443  235888888999999999984 422    1  25678899998777


Q ss_pred             HHHcc---ccCCCeEEecCCcceeeecccccccccccccccceeee-eee--cCCCCCCCHHHHHHHhcccccccCCceE
Q psy5413         133 IMTHC---DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMR-GVT--NQKDGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       133 l~~~~---~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~-~~~--~~~~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                      +..+.   ..+||+|+++++++........         ..|.+.+ ..+  ......+|.+.+.+.+..    ..++++
T Consensus       126 ~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~---------~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~----~~~~~~  192 (420)
T 4h51_A          126 AKLLTRVFDAETTPIYLSDPTWPNHYGVVK---------AAGWKNICTYAYYDPKTVSLNFEGMKKDILA----APDGSV  192 (420)
T ss_dssp             HHHHTTTSCTTTSCEEEEESCCTHHHHHHH---------HTTCCCEEEEECEEGGGTEECHHHHHHHHHH----SCSSCE
T ss_pred             HHHHHHhcCCCCCEEEEecCCchhHHHHHH---------HcCCeEEEeeccccccccCCCHHHHHHHHhc----cCCCcE
Confidence            66543   2589999999988754433222         2354433 222  223455788988888865    233778


Q ss_pred             EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh------------hcc-cCC-eEEEecccccCc--
Q psy5413         207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE------------VCA-SVD-TVMFCLSKGLGA--  270 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~------------~~~-~~d-v~~~s~sK~l~~--  270 (285)
                      ++++.+|+||| |..++.+++++|+++|+++++++|+||+|.++..            ..+ +.. +++.|+||.++.  
T Consensus       193 vll~~~p~NPt-G~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G  271 (420)
T 4h51_A          193 FILHQCAHNPT-GVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYS  271 (420)
T ss_dssp             EEEESSSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGG
T ss_pred             EEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEecccccccccc
Confidence            88889999999 9999999999999999999999999999873211            111 223 348999998766  


Q ss_pred             ceeEEeecCc
Q psy5413         271 PVGSILAGPE  280 (285)
Q Consensus       271 p~gg~~~~~~  280 (285)
                      .+.|+++...
T Consensus       272 ~RvG~~~~~~  281 (420)
T 4h51_A          272 ERAGTLSLLL  281 (420)
T ss_dssp             GCEEEEEEEC
T ss_pred             CceEEEEecc
Confidence            6667766543

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.66  E-value=3.1e-16  Score=142.13  Aligned_cols=163  Identities=20%  Similarity=0.146  Sum_probs=113.6

Q ss_pred             HHHHHHHHhHcCCCcE---EEcCChHHHHHHHHHHcccc---CCCeEEecCCcceeeecccccccccccccccceeeeee
Q psy5413         104 KELQEKAAKLAGKEAA---IFVPSGTMGNLIAIMTHCDR---RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus       104 ~~l~~~la~~~g~~~~---~~~~~Gs~a~~~al~~~~~~---~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~  177 (285)
                      ..+...+.+++|.+..   ++++++|.++++++.++++.   +++.|+++...|.++..+..+.         |...+.+
T Consensus       101 ~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~---------Gl~p~~v  171 (450)
T 3bc8_A          101 NSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTA---------GFEPVVI  171 (450)
T ss_dssp             HHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT---------TCEEEEE
T ss_pred             HHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHc---------CCeeEEE
Confidence            3455555666687653   88888875555555555432   2778888888999988766555         5555544


Q ss_pred             ec---CCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC-h---
Q psy5413         178 TN---QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP-L---  250 (285)
Q Consensus       178 ~~---~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~-~---  250 (285)
                      +.   ++.+.+|+++|+++|+++.   .+.+.+|++++.++.+ |.+.|   |++|+++|++||+|+|+|+||+. .   
T Consensus       172 ~~~~~~~~~~id~~~le~aI~~~~---~~~~~~Vv~t~t~~g~-g~~dd---l~~Ia~ia~~~gi~l~VD~A~G~~~~~~  244 (450)
T 3bc8_A          172 ENVLEGDELRTDLKAVEAKIQELG---PEHILCLHSTTACFAP-RVPDR---LEELAVICANYDIPHVVNNAYGLQSSKC  244 (450)
T ss_dssp             CCEEETTEEECCHHHHHHHHHHHC---GGGEEEEEEESSCCTT-BCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHH
T ss_pred             EeeecCccCCcCHHHHHHHHHhcC---CCCEEEEEEECCcCCC-ceecC---HHHHHHHHHHCCCeEEEECCCchhhhhh
Confidence            32   4456799999999998742   1255666665544433 68889   99999999999999999999882 1   


Q ss_pred             ---h-hhc--ccCCeEEEecccccCcceeEEee--cCccc
Q psy5413         251 ---A-EVC--ASVDTVMFCLSKGLGAPVGSILA--GPEEF  282 (285)
Q Consensus       251 ---~-~~~--~~~dv~~~s~sK~l~~p~gg~~~--~~~~~  282 (285)
                         . ...  +++|.++.|.|||+..|.+|.++  .++++
T Consensus       245 ~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~  284 (450)
T 3bc8_A          245 MHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPF  284 (450)
T ss_dssp             HHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHH
T ss_pred             HhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHH
Confidence               1 122  58999999999999997555443  34444

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.66  E-value=4e-16  Score=149.27  Aligned_cols=167  Identities=17%  Similarity=0.150  Sum_probs=124.8

Q ss_pred             CccCChhHHHHHHHHHhHcCCCcEEEcCCh-HHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceee
Q psy5413          96 VYLEDPTCKELQEKAAKLAGKEAAIFVPSG-TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLM  174 (285)
Q Consensus        96 ~y~~~~~~~~l~~~la~~~g~~~~~~~~~G-s~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~  174 (285)
                      ...+.....++++.+|+++|.+.++++.+| +.||.+++.+++ ++||.|+++...|.++.....++         |.++
T Consensus       190 L~~~~g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~-~pGD~VLv~r~~H~S~~~~l~ls---------Ga~p  259 (715)
T 3n75_A          190 LLDHSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSA-PAGSTILIDRNCHKSLTHLMMMS---------DVTP  259 (715)
T ss_dssp             TTTTBTHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHHHHHHS---------CCEE
T ss_pred             CCCCcHHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhC-CCCCEEEECCCccHHHHHHHHHc---------CCEE
Confidence            444556699999999999999999877777 589999999887 69999999999998876643333         7777


Q ss_pred             eeeecCCC-C----CC-----CHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEe
Q psy5413         175 RGVTNQKD-G----TF-----DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD  244 (285)
Q Consensus       175 ~~~~~~~~-~----~~-----d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D  244 (285)
                      +.++...+ +    .+     |+++|+++|+++.+.  ..+++|++++| |++ |.++|   +++|+++|++++  +|+|
T Consensus       260 v~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~--k~p~~vivt~p-n~~-G~v~d---l~~I~ela~~~~--livD  330 (715)
T 3n75_A          260 IYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNA--TWPVHAVITNS-TYD-GLLYN---TDFIKKTLDVKS--IHFD  330 (715)
T ss_dssp             EEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTC--CSCSEEEEESS-CTT-SEEEC---HHHHHHHCCCSE--EEEE
T ss_pred             EEEeccccccccccCcccccCCHHHHHHHHhhCcCc--cCceEEEEECC-CCC-CccCC---HHHHHHHhCcCc--EEEc
Confidence            77764322 2    23     899999999863211  12348888888 777 89999   899999998764  7999


Q ss_pred             CccCChh----------hhcc--cCCeE---EEecccccCcc-eeEEeecCcc
Q psy5413         245 GARLPLA----------EVCA--SVDTV---MFCLSKGLGAP-VGSILAGPEE  281 (285)
Q Consensus       245 ea~~~~~----------~~~~--~~dv~---~~s~sK~l~~p-~gg~~~~~~~  281 (285)
                      |||+...          .+..  .+|++   +.|+||+|+++ .||++..+++
T Consensus       331 EAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~  383 (715)
T 3n75_A          331 SAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD  383 (715)
T ss_dssp             CTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESC
T ss_pred             cccccccccCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCch
Confidence            9987211          1111  25765   89999999995 7788876554

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.64  E-value=4.7e-16  Score=141.96  Aligned_cols=161  Identities=17%  Similarity=0.110  Sum_probs=117.4

Q ss_pred             hhHHHHHHHHHhHcCCCcE--EEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413         101 PTCKELQEKAAKLAGKEAA--IFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus       101 ~~~~~l~~~la~~~g~~~~--~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      +...++++.+++++|.+..  +++++|+.++++++.++...+|++|+++.+.|.++.... ..+      ...|.+++.+
T Consensus       108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a------~~~G~~v~~v  181 (438)
T 1wyu_A          108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYL------EAVGAKLLTL  181 (438)
T ss_dssp             HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHH------HHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHH------HHCCCEEEEE
Confidence            3477999999999998755  688888855555554433358999999999887654321 111      2358888888


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCc-cC-Ch-h-hh
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA-RL-PL-A-EV  253 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea-~~-~~-~-~~  253 (285)
                      +. +++.+|+++    |++       +|++|++++| |++ |.+.|   +++|+++|++||+++|+|.. ++ +. . ..
T Consensus       182 ~~-~~~~~d~~~----i~~-------~t~~v~i~~p-n~t-G~~~~---l~~i~~la~~~g~~vivd~d~~a~g~~~~~~  244 (438)
T 1wyu_A          182 PL-EGGRTPLPE----VGE-------EVGAVVVQNP-NFL-GALED---LGPFAEAAHGAGALFVAVADPLSLGVLKPPG  244 (438)
T ss_dssp             CC-BTTBCCCCC----CCT-------TEEEEEEESS-CTT-SBCCC---HHHHHHHHHHTTCEEEEECCTTGGGTBCCHH
T ss_pred             cC-cCCccCHHH----hCC-------CeEEEEEECC-CCC-eEEec---HHHHHHHHHHcCCEEEEEechhhccCcCCCc
Confidence            86 456677665    555       7999999999 898 89998   99999999999999996633 22 11 1 12


Q ss_pred             cccCCeEEEeccc-----ccCcceeEEeecCccccc
Q psy5413         254 CASVDTVMFCLSK-----GLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       254 ~~~~dv~~~s~sK-----~l~~p~gg~~~~~~~~i~  284 (285)
                      ..++|+++++.+|     |++||.+|+++.++++++
T Consensus       245 ~~g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~  280 (438)
T 1wyu_A          245 AYGADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVR  280 (438)
T ss_dssp             HHTCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGG
T ss_pred             cCCCCEEEECCcccCCCccCCCCCeeEEEEcHHHHH
Confidence            2468999888555     677787889988887764

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.63  E-value=2.8e-16  Score=141.49  Aligned_cols=188  Identities=12%  Similarity=-0.006  Sum_probs=121.7

Q ss_pred             CeeeeeccCCcCCCcHHHHHHHHhc---ccCC-CCcc-CChhHHHHHHHHHhHcCCC---cEEE-cCChHHHHHHHHHHc
Q psy5413          66 IRTVDIRSDTISKPTMEMKNYMFNC---EVGD-DVYL-EDPTCKELQEKAAKLAGKE---AAIF-VPSGTMGNLIAIMTH  136 (285)
Q Consensus        66 ~~~~~~~~~~~~~~~~~v~~a~~~~---~~~~-~~y~-~~~~~~~l~~~la~~~g~~---~~~~-~~~Gs~a~~~al~~~  136 (285)
                      +.+++|.. .+...++++++++.+.   ..+. ..|. ..+...++++.+++++|.+   .+++ ++||++|+..+++++
T Consensus        39 ~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l  117 (398)
T 2fyf_A           39 PRDGRFGS-GPSKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGL  117 (398)
T ss_dssp             CSSCBCCS-SSCCCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHT
T ss_pred             cCCccccC-CCCCCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHh
Confidence            34555554 3456788999999873   2221 1121 1234678999999999975   3577 999999999999998


Q ss_pred             cccCCCeEEecCCcceeeecccccccccccccc--cceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         137 CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQI--GRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       137 ~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      + ++| .+++....|.....  ..+      ..  .|.+++.++.+++...+.     .+++       ++++|++++++
T Consensus       118 ~-~~g-v~~v~~~~~~~~~~--~~~------~~~~~g~~~~~v~~~~g~~~~~-----~i~~-------~~~~v~~~~~~  175 (398)
T 2fyf_A          118 I-DKR-SLHLTYGEFSAKFA--SAV------SKNPFVGEPIIITSDPGSAPEP-----QTDP-------SVDVIAWAHNE  175 (398)
T ss_dssp             C-SSC-EEEEECSHHHHHHH--HHH------HHCTTSCCCEEEECCTTCCCCC-----CCCT-------TCSEEEEESEE
T ss_pred             c-CCC-eEEEeCCHHHHHHH--HHH------HHhCCCCceEEEecCCCCCCCc-----cccC-------CCCEEEEeCcC
Confidence            7 465 22334444422110  011      11  256666676642222221     1333       78999999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-h-hcccCCeEEEecccccCcc-eeEEeecCcccc
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-E-VCASVDTVMFCLSKGLGAP-VGSILAGPEEFI  283 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-~-~~~~~dv~~~s~sK~l~~p-~gg~~~~~~~~i  283 (285)
                      |++ |.++|   +++|.++   +|+++|+||+|.... . -...+|+++.|+||+++++ ..|+++.+++++
T Consensus       176 npt-G~~~~---~~~i~~~---~~~~vivD~a~~~~~~~~~~~~~di~~~s~sK~~~~~gg~g~l~~~~~~~  240 (398)
T 2fyf_A          176 TST-GVAVA---VRRPEGS---DDALVVIDATSGAGGLPVDIAETDAYYFAPQKNFASDGGLWLAIMSPAAL  240 (398)
T ss_dssp             TTT-TEECC---CCCCTTC---C-CEEEEECTTTTTTSCCCGGGCSEEEECTTSTTCSCSSEEEEEECHHHH
T ss_pred             CCc-ceecc---hHHhhhh---cCCeEEEEeccccCCcccCcccCcEEEEecCcccCCCCceEEEEECHHHH
Confidence            999 89999   5555554   899999999988211 1 1234899999999999885 456777777664

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.62  E-value=4.6e-15  Score=132.92  Aligned_cols=189  Identities=15%  Similarity=0.125  Sum_probs=125.9

Q ss_pred             eccCCcCCCcHHHHHHHHhcccC--------CCCccCChhHHHHHH----HHHhHcCCCcE-----EEcCChHHHHHHHH
Q psy5413          71 IRSDTISKPTMEMKNYMFNCEVG--------DDVYLEDPTCKELQE----KAAKLAGKEAA-----IFVPSGTMGNLIAI  133 (285)
Q Consensus        71 ~~~~~~~~~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~~----~la~~~g~~~~-----~~~~~Gs~a~~~al  133 (285)
                      ..|+|+.  ++.|++++-..+.+        ...|+..+..+++|+    +..++||++.+     +...||+.||.+++
T Consensus        60 IASEN~~--S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy  137 (490)
T 3ou5_A           60 IASENFC--SRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVY  137 (490)
T ss_dssp             CTTCCCC--CHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHH
T ss_pred             ecCCCcC--CHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHH
Confidence            3566664  99999998776653        224555555555554    45667898864     78889999999999


Q ss_pred             HHccccCCCeEEecCCc---ceeeec---ccccccccccccccce--eeeeeecC-CCCCCCHHHHHHHhcccccccCCc
Q psy5413         134 MTHCDRRDSEIIVGDCS---HIMLWE---QGGASQTSVYSQIGRV--LMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCAS  204 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~---h~~~~~---~~~~~~~~~~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~  204 (285)
                      .+++ +|||.|+..+..   |.+...   ...+.       ..|.  +.+..+.+ +++.+|.+++++...++      +
T Consensus       138 ~All-~PGD~ilg~~l~~GGHltHg~~~~~~~v~-------~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~------k  203 (490)
T 3ou5_A          138 TALL-QPHDRIMGLDLPDGGHLTHGYMSDVKRIS-------ATSIFFESMPYKLNPKTGLIDYNQLALTARLF------R  203 (490)
T ss_dssp             HHHC-C-CCCEECBC-----------------------------------CBCEETTTTEECHHHHHHHHHHH------C
T ss_pred             HHHc-CCCCEEEecccCCCCcccccccCCCcccc-------cccccccccccccCCCCCcccHHHHHHHHhhc------C
Confidence            9988 699998875433   322110   01111       0122  22222322 45779999999998875      7


Q ss_pred             eEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEee
Q psy5413         205 TSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILA  277 (285)
Q Consensus       205 ~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~  277 (285)
                      +++|++-....+   ..+|   +++++++|++-|.+|++|.+|. ++.      .-..++|+++.|.||+|.||+||+|+
T Consensus       204 PklIi~G~SaY~---r~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~ADvVTtTTHKTLrGPrGG~Il  277 (490)
T 3ou5_A          204 PRLIIAGTSAYA---RLID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIF  277 (490)
T ss_dssp             CSEEEECCSSCC---SCCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSSTTCSCSCEEEE
T ss_pred             CCeEEECCccCc---cccC---HHHHHHHHhhcccEEEechhhhhhhhcccccCCccccceEEeccccccccCCCceEEE
Confidence            899988555443   6777   9999999999999999999988 221      22367999999999999999999999


Q ss_pred             cCcc
Q psy5413         278 GPEE  281 (285)
Q Consensus       278 ~~~~  281 (285)
                      .+++
T Consensus       278 ~~~~  281 (490)
T 3ou5_A          278 YRKG  281 (490)
T ss_dssp             EECS
T ss_pred             eccc
Confidence            8764

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.62  E-value=8.1e-16  Score=138.30  Aligned_cols=155  Identities=19%  Similarity=0.151  Sum_probs=113.7

Q ss_pred             cCCCc---EEEcCChHHHHHHHHHHcccc---CCCeEEecCCcceeeecccccccccccccccceeeeeeec---CCCCC
Q psy5413         114 AGKEA---AIFVPSGTMGNLIAIMTHCDR---RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN---QKDGT  184 (285)
Q Consensus       114 ~g~~~---~~~~~~Gs~a~~~al~~~~~~---~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~  184 (285)
                      .|.+.   .++++++|.++.+++.+++.+   .++.||++...|.+...+..++         |...+.++.   .+...
T Consensus       129 ~G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~---------Gl~Pv~V~p~~d~~~~~  199 (501)
T 3hl2_A          129 AGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITA---------GFEPVVIENVLEGDELR  199 (501)
T ss_dssp             TTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT---------TCEEEEECEEEETTEEE
T ss_pred             cCCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHc---------CCeEEEEeeeecccccC
Confidence            37654   477777787888888887743   2488999999999887765555         777776654   23356


Q ss_pred             CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh--------hh-cc
Q psy5413         185 FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA--------EV-CA  255 (285)
Q Consensus       185 ~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~--------~~-~~  255 (285)
                      +|+++++++|+++.   .+.+.+|+++++++.+ +.+.+   |++|+++|++||+++++||||+...        .. .-
T Consensus       200 id~e~le~aI~e~g---a~~i~~V~~Ttt~y~p-~~~dd---I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~  272 (501)
T 3hl2_A          200 TDLKAVEAKVQELG---PDCILCIHSTTSCFAP-RVPDR---LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARV  272 (501)
T ss_dssp             ECHHHHHHHHHHHC---GGGEEEEEEECSCCTT-BCCCC---HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcC---CCcEEEEEecCCCCCC-ccccc---HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhc
Confidence            89999999998741   1366777776666633 67788   9999999999999999999988211        11 12


Q ss_pred             c-CCeEEEecccccCcceeEEee--cCccccc
Q psy5413         256 S-VDTVMFCLSKGLGAPVGSILA--GPEEFIQ  284 (285)
Q Consensus       256 ~-~dv~~~s~sK~l~~p~gg~~~--~~~~~i~  284 (285)
                      + +|+++.|.||++..|+||.++  .++++++
T Consensus       273 GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~  304 (501)
T 3hl2_A          273 GRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQ  304 (501)
T ss_dssp             SCCCEEEEEHHHHHCCCSSCEEEEESCHHHHH
T ss_pred             CCCcEEEecccccceeecCceEEEeCCHHHHH
Confidence            4 999999999998888877554  3555543

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.62  E-value=3.3e-16  Score=140.95  Aligned_cols=188  Identities=14%  Similarity=0.007  Sum_probs=125.4

Q ss_pred             CCeeeeeccCCcCCCcH-HHHHHHHhcc--c---CCCCccCChhH-----HHHHHHHHhHcC-------C-CcEEEcCCh
Q psy5413          65 NIRTVDIRSDTISKPTM-EMKNYMFNCE--V---GDDVYLEDPTC-----KELQEKAAKLAG-------K-EAAIFVPSG  125 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~~~-~v~~a~~~~~--~---~~~~y~~~~~~-----~~l~~~la~~~g-------~-~~~~~~~~G  125 (285)
                      +..+++|..+.+..+.| .+.+++.+..  .   +...|......     .+|++.++++++       . +.+++++|+
T Consensus        21 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~i~~t~G~  100 (391)
T 3bwn_A           21 SDFVVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGTGS  100 (391)
T ss_dssp             TTSCEECSSCCCGGGHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHHHHCSBCCSSSEEEEEEHH
T ss_pred             CCCeeEcCCCCCCCCCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHHhcCCCCCCCCeEEEeCCh
Confidence            45678998888876555 4445443222  1   22356655555     899999999986       2 356888888


Q ss_pred             HHHHHHHHHHccccCCC----eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhccccccc
Q psy5413         126 TMGNLIAIMTHCDRRDS----EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIH  201 (285)
Q Consensus       126 s~a~~~al~~~~~~~g~----~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~  201 (285)
                      ++++..++.+++ ++||    +|++++++|.......         ...|.+++.++.+.++      ++   .+     
T Consensus       101 ~~al~~~~~~l~-~~Gd~~~~~Vlv~~P~y~~~~~~~---------~~~g~~~~~~~~d~~~------l~---~~-----  156 (391)
T 3bwn_A          101 TQLCQAAVHALS-SLARSQPVSVVAAAPFYSTYVEET---------TYVRSGMYKWEGDAWG------FD---KK-----  156 (391)
T ss_dssp             HHHHHHHHHHHH-HTSSSSSEEEEECSSCCTHHHHHH---------HTTCBTTEEEEEESTT------CC---CC-----
T ss_pred             HHHHHHHHHHhc-CCCCCCcceEEEcCCCchhHHHHH---------HHcCCeEEEecCCHHH------cC---CC-----
Confidence            999999999987 5899    9999998886544322         2347777777663221      11   13     


Q ss_pred             CCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC--hhhh--cccCCeEEEecccccCc--ceeEE
Q psy5413         202 CASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP--LAEV--CASVDTVMFCLSKGLGA--PVGSI  275 (285)
Q Consensus       202 ~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~--~~~~--~~~~dv~~~s~sK~l~~--p~gg~  275 (285)
                        ++++|++++|+||| |.+++     +|++.++.+++++|+||+|..  ...+  ....++++.|+||.++.  .+.|+
T Consensus       157 --~~k~v~l~~p~NPt-G~~~~-----~l~~~~~~~~~~ii~De~y~~~~~~~l~~~~~~~i~~~S~SK~~g~~GlRiG~  228 (391)
T 3bwn_A          157 --GPYIELVTSPNNPD-GTIRE-----TVVNRPDDDEAKVIHDFAYYWPHYTPITRRQDHDIMLFTFSKITGHAGSRIGW  228 (391)
T ss_dssp             --SCEEEEEESSCTTT-CCCCC-----CCC-----CCCEEEEECTTCSTTTSCCCCCBCCSEEEEEHHHHHSCGGGCEEE
T ss_pred             --CCEEEEECCCCCCC-chhHH-----HHHHHhhcCCCEEEEeCCCCCCCCCccccCCCCeEEEEechhhcCCCccceEE
Confidence              68999999999999 78876     344422333499999999872  1111  12345779999999874  55677


Q ss_pred             eec-Cccccc
Q psy5413         276 LAG-PEEFIQ  284 (285)
Q Consensus       276 ~~~-~~~~i~  284 (285)
                      ++. ++++++
T Consensus       229 ~~~~~~~l~~  238 (391)
T 3bwn_A          229 ALVKDKEVAK  238 (391)
T ss_dssp             EEECCHHHHH
T ss_pred             EEecCHHHHH
Confidence            764 776653

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.59  E-value=1.3e-15  Score=136.20  Aligned_cols=188  Identities=8%  Similarity=-0.091  Sum_probs=129.4

Q ss_pred             CCcCCCcHHHHHHHHhcccCC-----CC---cc----CChhHHHHHHHHHhHcCCCc---EEE-cCChHHHHHHHHHHcc
Q psy5413          74 DTISKPTMEMKNYMFNCEVGD-----DV---YL----EDPTCKELQEKAAKLAGKEA---AIF-VPSGTMGNLIAIMTHC  137 (285)
Q Consensus        74 ~~~~~~~~~v~~a~~~~~~~~-----~~---y~----~~~~~~~l~~~la~~~g~~~---~~~-~~~Gs~a~~~al~~~~  137 (285)
                      ......+++|++++.+...+.     ..   ..    ....+.+.|+.++++++.+.   ++| +.|||++++.++..+.
T Consensus        19 at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~   98 (377)
T 3e77_A           19 YFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLI   98 (377)
T ss_dssp             ECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHG
T ss_pred             cccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhcc
Confidence            333446889999999876521     11   11    12347889999999998753   577 5789999999999887


Q ss_pred             cc-CCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCC
Q psy5413         138 DR-RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNY  216 (285)
Q Consensus       138 ~~-~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~  216 (285)
                      .. +||++++....|... .+...+      +..|..++.++.++++..++++++.++++       ++++|.+.+..+.
T Consensus        99 ~~~~Gd~v~~~~~g~~~~-~~~~~a------~~~G~~~~~~~~~~~~~~~~~~~~~~i~~-------~t~lV~~~h~et~  164 (377)
T 3e77_A           99 GLKAGRCADYVVTGAWSA-KAAEEA------KKFGTINIVHPKLGSYTKIPDPSTWNLNP-------DASYVYYCANETV  164 (377)
T ss_dssp             GGSTTCEEEECCCSHHHH-HHHHHH------TTTSEEEECSCCCSSSCSCCCGGGCCCCT-------TCSCEEEESEETT
T ss_pred             CCCCCCeEEEEECCHHHH-HHHHHH------HHhCCceEEeccCCCcCCCCChHHhccCC-------CccEEEEeCccCc
Confidence            42 388876654444321 222233      45577777777655555666666666655       7899999988777


Q ss_pred             CCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhhh-cccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         217 CGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAEV-CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       217 ~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~~-~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      + |.+.|   +     +|+++|+++++|.+++ +...+ ....|+++++.+||+|.+-.|++..++++++
T Consensus       165 t-G~~~p---i-----i~~~~~~~~~vD~~q~~g~~~id~~~~~~~~~s~~K~~gp~G~g~l~~~~~~l~  225 (377)
T 3e77_A          165 H-GVEFD---F-----IPDVKGAVLVCDMSSNFLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLG  225 (377)
T ss_dssp             T-TEECS---S-----CCCCTTCCEEEECTTTTTSSCCCGGGCSEEEEEGGGTTSCTTCEEEEEETTSCS
T ss_pred             h-heEch---h-----hhccCCCEEEEEcccccCCCCCchhhcCEEEEecccccCCCccEEEEEcHHHHh
Confidence            7 99999   5     4778999999999988 22222 2345678999999996444467777776654

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.55  E-value=2.2e-15  Score=135.16  Aligned_cols=190  Identities=9%  Similarity=-0.057  Sum_probs=126.7

Q ss_pred             eeccCCcCCCcHHHHHHHHhcccC------------CCCccCChhHHHHHHHHHhHcCCCc---EEE-cCChHHHHHHHH
Q psy5413          70 DIRSDTISKPTMEMKNYMFNCEVG------------DDVYLEDPTCKELQEKAAKLAGKEA---AIF-VPSGTMGNLIAI  133 (285)
Q Consensus        70 ~~~~~~~~~~~~~v~~a~~~~~~~------------~~~y~~~~~~~~l~~~la~~~g~~~---~~~-~~~Gs~a~~~al  133 (285)
                      .+.+..++..+++|++++.+....            +..........+.|+.+++++|.+.   ++| +.|||++++.++
T Consensus        29 yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai  108 (386)
T 3qm2_A           29 FNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVP  108 (386)
T ss_dssp             EECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHH
T ss_pred             ccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHH
Confidence            344455566899999999876532            1011123457899999999999752   577 589999999999


Q ss_pred             HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCC-CCHHHHHHHhcccccccCCceEEEEE
Q psy5413         134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGT-FDLDEMEAKFSTADNIHCASTSLVCV  210 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~-~d~~~l~~~i~~~~~~~~~~~~~v~i  210 (285)
                      ..++ ++|+++++....|... .+...+      +..| .+..++.+  +++. .++++++.++++       +|++|.+
T Consensus       109 ~~l~-~~gd~v~~~~~~~~~~-~~~~~a------~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~-------~t~lV~~  172 (386)
T 3qm2_A          109 LNLL-GDKTTADYVDAGYWAA-SAIKEA------KKYC-APQIIDAKITVDGKRAVKPMREWQLSD-------NAAYLHY  172 (386)
T ss_dssp             HHHC-TTCCEEEEEESSHHHH-HHHHHH------TTTS-EEEEEECEEEETTEEEECCGGGCCCCT-------TCSCEEE
T ss_pred             Hhcc-CCCCeEEEEeCCHHHH-HHHHHH------HHhC-CeEEEecCcccCCCCCCchHHHhhcCC-------CCcEEEE
Confidence            9887 5888865433322211 111222      3456 67777764  3553 677778777776       7899999


Q ss_pred             ecccCCCCeee-CCHHHHHHHHHHHHHcCCeEEEeCccC-Chhhh-cccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         211 ENTHNYCGGTV-LPMQWLRELKARCQEHNIPVHMDGARL-PLAEV-CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       211 ~~~~n~~gG~~-~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~~-~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      .+..+.+ |.+ .|   +++|.     +|+++++|.+|+ +...+ ....|++++|.+||+|.+-.|++..++++++
T Consensus       173 ~h~et~t-G~~i~p---i~~i~-----~g~~~~vDa~qs~g~~pidv~~~~~~~~s~hK~lGP~G~g~l~v~~~~~~  240 (386)
T 3qm2_A          173 CPNETID-GIAIDE---TPDFG-----PEVVVTADFSSTILSAPLDVSRYGVIYAGAQKNIGPAGLTLVIVREDLLG  240 (386)
T ss_dssp             CSEETTT-TEECCC---CCCCC-----TTCCEEEECTTTTTSSCCCGGGCSEEEEETTTTTCCTTEEEEEEEGGGCS
T ss_pred             ECCcCCc-CEecCc---hhhhc-----CCCEEEEEcccccCCCCCCccccCEEEEecccccCCCccEEEEECHHHHh
Confidence            9988888 775 78   66664     899999999988 22222 2344678899999996433466777776654

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.54  E-value=1.8e-15  Score=137.77  Aligned_cols=185  Identities=12%  Similarity=-0.050  Sum_probs=130.0

Q ss_pred             CeeeeeccCCcCCCc-HHHHHHHHhccc--CCCC--ccCCh-h---HHHHHHHHHhHcC--------CCcEEEcCChHHH
Q psy5413          66 IRTVDIRSDTISKPT-MEMKNYMFNCEV--GDDV--YLEDP-T---CKELQEKAAKLAG--------KEAAIFVPSGTMG  128 (285)
Q Consensus        66 ~~~~~~~~~~~~~~~-~~v~~a~~~~~~--~~~~--y~~~~-~---~~~l~~~la~~~g--------~~~~~~~~~Gs~a  128 (285)
                      ..+++|..+.+..+. +.+.+++.+...  +...  |.... .   ..+|++.++++++        .+.+++++|++++
T Consensus        56 ~~~i~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~a  135 (427)
T 2hox_A           56 GCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQL  135 (427)
T ss_dssp             TCCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHH
T ss_pred             CceEEecCcCCCCCCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHH
Confidence            356888877776644 467777776652  2222  65444 4   7899999999975        2457899999999


Q ss_pred             HHHHHHHc--------cccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccc
Q psy5413         129 NLIAIMTH--------CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNI  200 (285)
Q Consensus       129 ~~~al~~~--------~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~  200 (285)
                      +..++.++        + ++||+|+++.++|.......         ...|.+++.+.      +|+++|++++++    
T Consensus       136 l~~~~~~l~~~~~~~~~-~~Gd~Vlv~~P~y~~~~~~~---------~~~g~~~~~~~------~d~~~l~~~~~~----  195 (427)
T 2hox_A          136 IHGLVISLSPNMTATPD-APESKVVAHAPFYPVFREQT---------KYFDKKGYVWA------GNAANYVNVSNP----  195 (427)
T ss_dssp             HHHHHHHHSCCTTTCTT-SCCEEEEECSSCCHHHHHHH---------HHSCBTTEEEE------EEGGGGTTCSCG----
T ss_pred             HHHHHHHHhhccccccC-CCCCEEEEeCCCcccHHHHH---------HHcCCeeeeec------CCHHHHHHhhcC----
Confidence            99999987        5 68999999998875443311         22355555433      477888888866    


Q ss_pred             cCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC----hhhhcccCCeEEEecccccCc--ceeE
Q psy5413         201 HCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP----LAEVCASVDTVMFCLSKGLGA--PVGS  274 (285)
Q Consensus       201 ~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~----~~~~~~~~dv~~~s~sK~l~~--p~gg  274 (285)
                         ++++|++++|+||| |.+++ +.+       +  ++..+.|+++..    +..+....++++.|+||.++.  .+.|
T Consensus       196 ---~~k~v~l~~p~NPt-G~~~~-~~l-------~--~~~~i~d~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~G~RiG  261 (427)
T 2hox_A          196 ---EQYIEMVTSPNNPE-GLLRH-AVI-------K--GCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFG  261 (427)
T ss_dssp             ---GGEEEEEESSCTTT-CCCCC-CSS-------T--TCEEEEECTTCSTTTSCCCSCBCCSEEEEEHHHHTSCGGGCCE
T ss_pred             ---CceEEEEcCCCCCc-ccccH-HHH-------c--CCCEEEeecccCCCCCccccCCCceEEEEeChhcCCCCCceEE
Confidence               78999999999999 88888 532       2  567899988652    112223457789999999874  5667


Q ss_pred             Eeec-Cccccc
Q psy5413         275 ILAG-PEEFIQ  284 (285)
Q Consensus       275 ~~~~-~~~~i~  284 (285)
                      +++. ++++++
T Consensus       262 ~~~~~~~~l~~  272 (427)
T 2hox_A          262 WALIKDESVYN  272 (427)
T ss_dssp             EEEECCHHHHH
T ss_pred             EEEECCHHHHH
Confidence            8777 566653

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.40  E-value=1.2e-13  Score=122.88  Aligned_cols=182  Identities=14%  Similarity=0.084  Sum_probs=120.6

Q ss_pred             eeeccCCcCCCcHHHHHHHHhcccC-----CCCc-------cCChhHHHHHHHHHhHcCCC---cEEE-cCChHHHHHHH
Q psy5413          69 VDIRSDTISKPTMEMKNYMFNCEVG-----DDVY-------LEDPTCKELQEKAAKLAGKE---AAIF-VPSGTMGNLIA  132 (285)
Q Consensus        69 ~~~~~~~~~~~~~~v~~a~~~~~~~-----~~~y-------~~~~~~~~l~~~la~~~g~~---~~~~-~~~Gs~a~~~a  132 (285)
                      +.|..+ ++..+++|++++.+....     ...+       .......+.|+.++++++.+   .++| +.|||++++.+
T Consensus         7 ~~f~pg-pt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~   85 (361)
T 3m5u_A            7 INFSAG-PSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMI   85 (361)
T ss_dssp             EECCSS-SCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHH
T ss_pred             EeecCC-CCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHH
Confidence            444433 366789999999887652     1111       01245788999999999974   3566 89999999999


Q ss_pred             HHHccccCCCeE--EecC-CcceeeecccccccccccccccceeeeeeecCCCCC--CCHHHHHHHhcccccccCCceEE
Q psy5413         133 IMTHCDRRDSEI--IVGD-CSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGT--FDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       133 l~~~~~~~g~~v--i~~~-~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                      +..+.  +|+++  ++.. ..|.    +...+      +..|.++..++.++++.  .+++. +  |++       ++++
T Consensus        86 ~~~~~--~~~~~~~i~~~~~~~~----~~~~a------~~~G~~v~~~~~~~~g~~~~~~~~-~--l~~-------~t~l  143 (361)
T 3m5u_A           86 PMNLA--LNGVCEYANTGVWTKK----AIKEA------QILGVNVKTVASSEESNFDHIPRV-E--FSD-------NADY  143 (361)
T ss_dssp             HHHHC--CSSCEEEEECSHHHHH----HHHHH------HHTTCCEEEEEECTTTTSCSCCCC-C--CCT-------TSSE
T ss_pred             HHhcC--CCCeEEEEeCCHHHHH----HHHHH------HHcCCceEEEecccCcCCCcCChh-h--cCC-------CCCE
Confidence            99876  56653  3222 2221    11122      34577888888766653  45555 3  766       7899


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhhh-cccCCeEEEecccccCcceeEEeecCcccc
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAEV-CASVDTVMFCLSKGLGAPVGSILAGPEEFI  283 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~~-~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i  283 (285)
                      |.+.+..+.+ |.+.|.        +++ +|+++++|.+++ +...+ ....|+++++.+||+|.+-.|++..+++++
T Consensus       144 v~~~~~e~~t-G~~~~~--------i~~-~~~~~~vD~~q~~g~~~id~~~~d~~~~s~~K~~gp~G~g~l~~~~~~~  211 (361)
T 3m5u_A          144 AYICSNNTIY-GTQYQN--------YPK-TKTPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDML  211 (361)
T ss_dssp             EEEESEETTT-TEECSS--------CCC-CSSCEEEECGGGTTSSCCCCTTEEEEEEETTTTSSCTTCEEEEEEHHHH
T ss_pred             EEEeCCCCCc-ceeCCc--------ccc-cCCEEEEEcccccCCCCCCcccCCEEEEechhccCCCccEEEEEcHHHH
Confidence            9999888888 788772        233 499999999988 22221 235789999999999643346666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	285
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	5e-36
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	3e-33
d1m6sa_	343	c.67.1.1 (A:) Low-specificity threonine aldolase {	4e-30
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	3e-28
d1c4ka2	462	c.67.1.5 (A:108-569) Ornithine decarboxylase major	7e-17
d1v72a1	345	c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps	2e-16
d2e7ja1	364	c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (	4e-11
d1svva_	340	c.67.1.1 (A:) Low-specificity threonine aldolase {	6e-10
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	9e-09
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	9e-09
d1p3wa_	391	c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich	1e-06
d1mdoa_	376	c.67.1.4 (A:) Aminotransferase ArnB {Salmonella ty	4e-06
d1b9ha_	384	c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid syntha	3e-05
d1o69a_	374	c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE,	6e-05
d1js3a_	476	c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa)	1e-04
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	2e-04
d1z7da1	404	c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla	0.001
d1gc0a_	392	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudom	0.003

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score =  131 bits (331), Expect = 5e-36
 Identities = 47/261 (18%), Positives = 83/261 (31%), Gaps = 40/261 (15%)

Query: 56  PVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNC-EVGDDVYLEDPTCKELQEKAAKLA 114
           P  L    V    +D+ +D+ +     +   M      GD+ +    +   L E    + 
Sbjct: 34  PFLLDSEDV---FIDLLTDSGTGA---VTQSMQAAMMRGDEAFSGSRSYYALAESVKNIF 87

Query: 115 GKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDC-----SHIMLWEQGGASQTS----V 165
           G +  I    G     I I     +R+ E  +        S+       G SQ +     
Sbjct: 88  GYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVR 147

Query: 166 YSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQ 225
              I      GV     G FDL+ +E      + +   +   +    T N  GG  + + 
Sbjct: 148 NVYIKEAFDTGVRYDFKGNFDLEGLERG---IEEVGPNNVPYIVATITSNSAGGQPVSLA 204

Query: 226 WLRELKARCQEHNIPVHMDGARL---------------------PLAEVCASVDTVMFCL 264
            L+ + +  ++++IPV MD AR                         E     D +    
Sbjct: 205 NLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSA 264

Query: 265 SKGLGAPVGSILAGPEEFIQK 285
            K    P+G +L   ++    
Sbjct: 265 KKDAMVPMGGLLCMKDDSFFD 285

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score =  124 bits (311), Expect = 3e-33
 Identities = 32/244 (13%), Positives = 64/244 (26%), Gaps = 37/244 (15%)

Query: 68  TVDIRSDTISKPTME-MKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGT 126
            +D+ +D+ +    +     M    +GD+ Y        L++   +L G +  +    G 
Sbjct: 44  YIDLLTDSGTNAMSDKQWAGMM---IGDEAYAGSENFYHLEKTVKELFGFKHIVPTHQGR 100

Query: 127 MGNLIAIMTHCDRRDSEI----IVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD 182
               +                       H             V           +     
Sbjct: 101 GAENLLSQLAIKPGQYVAGNMYFTTTRFHQEKNGATF-----VDIVRDEAHDASLNLPFK 155

Query: 183 GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVH 242
           G  DL+++          + A    +C+  T N  GG  + M  +R +      + I + 
Sbjct: 156 GDIDLNKLATLIKEKGAENIA---YICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIF 212

Query: 243 MDGARL---------------------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEE 281
            D  R                       + E+ +  D       K     +G  L   +E
Sbjct: 213 YDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDE 272

Query: 282 FIQK 285
            +  
Sbjct: 273 EMFS 276

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score =  113 bits (283), Expect = 4e-30
 Identities = 95/225 (42%), Positives = 130/225 (57%), Gaps = 18/225 (8%)

Query: 69  VDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMG 128
           +D+RSDT++KPT EM+  M   EVGDDVY EDPT  EL+  AA+  GKEAA+FVPSGTMG
Sbjct: 2   IDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMG 61

Query: 129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLD 188
           N ++IM H  R D  I+  D                  + +  V+   V   K+G  D D
Sbjct: 62  NQVSIMAHTQRGDEVILEADSHIFWYEVGA-------MAVLSGVMPHPV-PGKNGAMDPD 113

Query: 189 EMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA-- 246
           ++       +  H   TSL+ +ENTHN  GG V+P++ ++E+    +EH I VH+DGA  
Sbjct: 114 DVRKAIRPRNI-HFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARI 172

Query: 247 -------RLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284
                   +P+ E     D+VMFCLSKGL APVGS++ G  +FI+
Sbjct: 173 FNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIE 217

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score =  110 bits (275), Expect = 3e-28
 Identities = 35/249 (14%), Positives = 77/249 (30%), Gaps = 39/249 (15%)

Query: 68  TVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTM 127
            +D+ +D+ +    +  +       GD+ Y       +L++KA +L   +  I    G  
Sbjct: 44  YIDLLTDSGTNAMSD--HQWAAMITGDEAYAGSRNYYDLKDKAKELFNYDYIIPAHQGRG 101

Query: 128 GNLIAIMTHCDRRDSEIIVGDCSHIM----------LWEQGGASQTSVYSQIGRVLMRGV 177
              I        +  +         +            E  G    ++ ++         
Sbjct: 102 AENILFPVLLKYKQ-KEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDS--ET 158

Query: 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH 237
            +   G FD+ +++   +     +  +   +    T N  GG  + M  L+E+    ++H
Sbjct: 159 YDDWKGDFDIKKLKENIAQHGADNIVA---IVSTVTCNSAGGQPVSMSNLKEVYEIAKQH 215

Query: 238 NIPVHMDGARL---------------------PLAEVCASVDTVMFCLSKGLGAPVGSIL 276
            I V MD AR                       + ++    D +     K     +G ++
Sbjct: 216 GIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLV 275

Query: 277 AGPEEFIQK 285
           A  +     
Sbjct: 276 AIRDNEEIF 284

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

 Score = 77.8 bits (190), Expect = 7e-17
 Identities = 24/206 (11%), Positives = 54/206 (26%), Gaps = 25/206 (12%)

Query: 94  DDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIM 153
            D+ + +      ++ AA++   +   FV  G+      + +        ++    +H  
Sbjct: 59  GDLLIHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKS 118

Query: 154 LWEQGGASQTS--VYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTAD--NIHCASTSLVC 209
           ++    A      VY Q  R     +    D  FD  ++    +  D           + 
Sbjct: 119 VYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLA 178

Query: 210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA---------RLPLAEVCA----- 255
           V     Y  GT+     + +           +  D A          +  +         
Sbjct: 179 VIQLGTYD-GTIYNAHEVVKR---IGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLG 234

Query: 256 ---SVDTVMFCLSKGLGAPVGSILAG 278
                  V+  + K       +    
Sbjct: 235 PEDPGIIVVQSVHKQQAGFSQTSQIH 260

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

 Score = 76.0 bits (185), Expect = 2e-16
 Identities = 24/179 (13%), Positives = 56/179 (31%), Gaps = 10/179 (5%)

Query: 70  DIRSDTISKPTMEMKNYMFNCEVGD-DVYLEDPTCKELQEKAAKLAGKEAAI-FVPSGTM 127
              SD I+  + E+   +     G    Y  D    +++ K  ++  ++  +  VP+GT 
Sbjct: 6   GFSSDNIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTA 65

Query: 128 GNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDL 187
            N + +                 +          +                +      D+
Sbjct: 66  ANALCLSAMTPP-------WGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDI 118

Query: 188 DEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246
             +  +          +T   CV  T     G++  +  +  +   C+  ++ +HMDG+
Sbjct: 119 VRLRERT-REKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGS 176

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 60.6 bits (145), Expect = 4e-11
 Identities = 16/192 (8%), Positives = 49/192 (25%), Gaps = 11/192 (5%)

Query: 95  DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIML 154
           D     P    +  +  K  G + A             + +   +             ++
Sbjct: 41  DEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKD----------AWVV 90

Query: 155 WEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH 214
            ++     + V ++   + +  V       + +       +  +        L  +    
Sbjct: 91  MDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPD 150

Query: 215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEVCASVDTVMFCLSKGLGAP-VG 273
              G      +  +          +       R+P++      D ++    K + A    
Sbjct: 151 GNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPI 210

Query: 274 SILAGPEEFIQK 285
            ++   EE+ + 
Sbjct: 211 GVMGMKEEWAEI 222

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

 Score = 56.9 bits (135), Expect = 6e-10
 Identities = 24/204 (11%), Positives = 48/204 (23%), Gaps = 3/204 (1%)

Query: 72  RSDTISKPTMEMKNYMFNCEVGDDV-YLEDPTCKELQEKAAKLAGKEAA--IFVPSGTMG 128
            +D       ++ + M    +     Y +D  C +      +L  +  A   F+  GT  
Sbjct: 5   VNDYSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQT 64

Query: 129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLD 188
           NLIA        ++ I                +             +      +     +
Sbjct: 65  NLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHEN 124

Query: 189 EMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248
             E            +T +            +    +    L          +      L
Sbjct: 125 RSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDL 184

Query: 249 PLAEVCASVDTVMFCLSKGLGAPV 272
            LA++    D      +K  G   
Sbjct: 185 TLADIARLTDMFYIGATKAGGMFG 208

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.4 bits (127), Expect = 9e-09
 Identities = 34/188 (18%), Positives = 53/188 (28%), Gaps = 29/188 (15%)

Query: 104 KELQEKAAKLAG---KEAAIFVPSGTMGNLIAIMT---HCDRRDSEIIVGDCSHIMLWEQ 157
             L     KLAG     +   VP  T  +L        H   +   II            
Sbjct: 97  NSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQ------ 150

Query: 158 GGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYC 217
               ++ V +    V++  V    +   DL  +EAK             L     T  + 
Sbjct: 151 KSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKI----QELGPEHILCLHSTTACFA 206

Query: 218 GGTVLPMQWLRELKARCQEHNIPVHMDGAR----------LPLAEVCASVDTVMFCLSKG 267
                 +    EL   C  ++IP  ++ A           +        +D  +  L K 
Sbjct: 207 PRVPDRL---EELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKN 263

Query: 268 LGAPVGSI 275
              PVG  
Sbjct: 264 FMVPVGGA 271

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 53.4 bits (127), Expect = 9e-09
 Identities = 28/195 (14%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 105 ELQEKAAKLAGKEAAIFV--PSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQ 162
           ++ E   K  G          S  M   + +     +  S +++   +           +
Sbjct: 117 KILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYA-----SHKSPIK 171

Query: 163 TSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH-NYCGGTV 221
              +  +   L+  V +       ++++E              +  CV +T   +     
Sbjct: 172 AVSFVGMNMRLVETVLDGDRVYVPVEDIENAI----KKEIELGNRPCVLSTLTFFPPRNS 227

Query: 222 LPMQWLRELKARCQEHNIPVHMDGARLPLAEVCA---------SVDTVMFCLSKGLGAPV 272
                + E+   C+ ++IP  ++GA                   VD V+    K L  P+
Sbjct: 228 DD---IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPI 284

Query: 273 GS--ILAGPEEFIQK 285
           G   + +   EFI++
Sbjct: 285 GGGLVYSTDAEFIKE 299

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 38/195 (19%), Positives = 65/195 (33%), Gaps = 36/195 (18%)

Query: 104 KELQEKAAKLAGKEAA--IFVPSGTMGNLIAIMTHCD---RRDSEIIVGDCSHIMLWEQG 158
              + + A L G +    +F    T  + +AI    +   ++   II     H       
Sbjct: 51  DIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEH------- 103

Query: 159 GASQTSVYSQIGRVLMRGVT-----NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT 213
                +V     ++   G        Q++G  DL E+EA            T LV + + 
Sbjct: 104 ----KAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMR-------DDTILVSIMHV 152

Query: 214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDG----ARLPLAEVCASVDTVMFCLSKGLG 269
           +N   G V  +  + E+   C+   I  H+D      +LP+      VD + F   K  G
Sbjct: 153 NNEI-GVVQDIAAIGEM---CRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYG 208

Query: 270 APVGSILAGPEEFIQ 284
                 L    +   
Sbjct: 209 PKGIGALYVRRKPRV 223

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} Length = 376

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 45.0 bits (105), Expect = 4e-06
 Identities = 31/182 (17%), Positives = 54/182 (29%), Gaps = 28/182 (15%)

Query: 101 PTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGA 160
           P  +EL+    +L G + A+ V S T G  IA+M        E+I    + +        
Sbjct: 31  PKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNM--- 87

Query: 161 SQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT 220
                   +G   +    ++       + +EA  +         T  +     H    G 
Sbjct: 88  -----IVLLGANPVMVDVDRDTLMVTPEHIEAAITP-------QTKAIIP--VHYA--GA 131

Query: 221 VLPMQWLRELKARCQEHNIPVHMDGARLPLAEV------CASVDTVMFCLSKGLGAPVGS 274
              +  +  L    + + IPV  D A                     F   K +    G 
Sbjct: 132 PADLDAIYAL---GERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCAEGG 188

Query: 275 IL 276
           I+
Sbjct: 189 IV 190

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} Length = 384

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 12/63 (19%), Positives = 22/63 (34%)

Query: 93  GDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHI 152
           G    +        + + A   G   A+ V +GT    +A+        +E+IV   + I
Sbjct: 26  GQWWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFI 85

Query: 153 MLW 155
              
Sbjct: 86  SSS 88

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} Length = 374

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

 Score = 41.6 bits (96), Expect = 6e-05
 Identities = 7/52 (13%), Positives = 19/52 (36%)

Query: 101 PTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHI 152
                 ++     +  E A+ + S T    +A+     ++D  ++    + I
Sbjct: 21  EFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFI 72

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 23/184 (12%), Positives = 48/184 (26%), Gaps = 30/184 (16%)

Query: 114 AGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQ----- 168
           AG+   +   S +   L+A++    +    +         L +     +   Y+      
Sbjct: 137 AGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPG---LTQGAVLEKLVAYASDQAHS 193

Query: 169 -------IGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTV 221
                  IG V ++ + +          ++       +          V         + 
Sbjct: 194 SVERAGLIGGVKLKAIPSDGKFAMRASALQEAL--ERDKAAGLIPFFVVATLGTTSCCSF 251

Query: 222 LPMQWLRELKARCQEHNIPVHMDGARL----------PLAEVCASVDTVMFCLSKGLGAP 271
             +    E+   C E +I +H+D A             L       D+  F   K L   
Sbjct: 252 DNLL---EVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN 308

Query: 272 VGSI 275
               
Sbjct: 309 FDCS 312

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 30/177 (16%), Positives = 50/177 (28%), Gaps = 29/177 (16%)

Query: 121 FVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ 180
               G+           D  D E+IV     +   E        V    G V+      +
Sbjct: 96  VTVGGSQALFNLFQAILDPGD-EVIVLSPYWVSYPEM-------VRFAGGVVVEVETLPE 147

Query: 181 KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIP 240
           +    D + +    +         T  + V + +N  G  V P + L  L     EH+  
Sbjct: 148 EGFVPDPERVRRAIT-------PRTKALVVNSPNNPTG-AVYPKEVLEALARLAVEHDFY 199

Query: 241 VHMD---------GARLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGPEEFIQK 285
           +  D         G       V       +   +K        +G    GP+E I+ 
Sbjct: 200 LVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIG-YACGPKEVIKA 255

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 16/152 (10%), Positives = 34/152 (22%), Gaps = 7/152 (4%)

Query: 126 TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTF 185
                  +         +I       ++             S                 F
Sbjct: 108 ANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQF 167

Query: 186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD- 244
                +   +  + +   +     VE      G  V    +L+ +   C+++N+    D 
Sbjct: 168 SKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADE 227

Query: 245 ------GARLPLAEVCASVDTVMFCLSKGLGA 270
                      L     +V   +  L K L  
Sbjct: 228 VQTGLGRTGKLLCVHHYNVKPDVILLGKALSG 259

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} Length = 392

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 29/180 (16%), Positives = 51/180 (28%), Gaps = 32/180 (17%)

Query: 72  RSDTISKPTMEMKNYMFNCEVGDDVY--LEDPTCKELQEKAAKLAGKEAAIFVPSGTMGN 129
           ++ T + PT+E     F  E     Y  + +PT   L+ + A L G EA + + SG    
Sbjct: 28  QTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLALASGMGAI 87

Query: 130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDE 189
              + T     D  ++                              GV  +     DL  
Sbjct: 88  TSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIG-----------EFGVKLRHVDMADLQA 136

Query: 190 MEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW----LRELKARCQEHNIPVHMDG 245
           +EA  +                 T      +          +  +    ++H   V +D 
Sbjct: 137 LEAAMT---------------PATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDN 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	285
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.92
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.91
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.91
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.91
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.9
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.9
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.89
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.89
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.88
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.88
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.88
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.88
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.87
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.87
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.86
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.86
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.86
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.85
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.85
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.85
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.84
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.84
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.84
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.84
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.84
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.84
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.84
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.84
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.83
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.82
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.82
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.81
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.81
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.81
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.81
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.8
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.8
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.8
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.8
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.8
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.79
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.79
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.78
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.78
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.78
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.78
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.77
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.77
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.76
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.76
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.75
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.74
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.72
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.72
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.71
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.71
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.71
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.7
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.7
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.7
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.7
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.7
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.69
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.69
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.69
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.68
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.68
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.68
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.68
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.67
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.66
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.65
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.64
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.63
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.61
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.6
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.58
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.57
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.55
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.48
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.36
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.2
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.11
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.01
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	98.85
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.5

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=1.3e-24  Score=191.27  Aligned_cols=190  Identities=13%  Similarity=0.208  Sum_probs=148.7

Q ss_pred             CcHHHHHHHHhcccCCC--Cc---------cCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEec
Q psy5413          79 PTMEMKNYMFNCEVGDD--VY---------LEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVG  147 (285)
Q Consensus        79 ~~~~v~~a~~~~~~~~~--~y---------~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~  147 (285)
                      .++++++|+.+...+..  .|         ...+....+++.+|+++|.+.+++++||++|+.+++.+++ ++||+||++
T Consensus        14 l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~al~-~~gd~Vi~~   92 (364)
T d2e7ja1          14 LTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLA-KKDAWVVMD   92 (364)
T ss_dssp             CCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHC-CTTCEEEEE
T ss_pred             CCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhCcCEEEEECcHHHHHHHHHHHHh-CCCcEEEee
Confidence            57889999877543211  11         1224678899999999999999999999999999999987 699999999


Q ss_pred             CCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHH
Q psy5413         148 DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQ  225 (285)
Q Consensus       148 ~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~  225 (285)
                      .+.|.+......         ..|.+++.+|..  .++.+|+++++++|++..+  ..++++|++++++|++ |.+.|  
T Consensus        93 ~~~h~s~~~~~~---------~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k--~~~~~lv~i~~~~n~t-G~~~~--  158 (364)
T d2e7ja1          93 ENCHYSSYVAAE---------RAGLNIALVPKTDYPDYAITPENFAQTIEETKK--RGEVVLALITYPDGNY-GNLPD--  158 (364)
T ss_dssp             TTCCHHHHHHHH---------HTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTT--TSCEEEEEEESSCTTT-CCCCC--
T ss_pred             cccccccchHHH---------hccceEEEeeeccccccccCHHHHHhhhhhhcc--cCCceEEEeecCCCCC-ceeec--
Confidence            999976654322         338888888764  3567999999999976322  2267899999999999 89999  


Q ss_pred             HHHHHHHHHHHcCCeEEEeCccC----ChhhhcccCCeEEEecccccCcc-eeEEeecCccccc
Q psy5413         226 WLRELKARCQEHNIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGAP-VGSILAGPEEFIQ  284 (285)
Q Consensus       226 ~l~~i~~la~~~gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~p-~gg~~~~~~~~i~  284 (285)
                       +++|+++|++||+++|+|++|+    +......++|++++|+||+++++ .+|+++.++++++
T Consensus       159 -l~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~  221 (364)
T d2e7ja1         159 -VKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAE  221 (364)
T ss_dssp             -HHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTT
T ss_pred             -chhheeccccccchhhccccchhhhhhhcccccccceeeeccccccCCCCCEEEEEECHHHHH
Confidence             9999999999999999999998    22222347899999999999985 4688888877664

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=2.4e-24  Score=191.61  Aligned_cols=203  Identities=17%  Similarity=0.126  Sum_probs=159.8

Q ss_pred             cCCeeeeeccCCcCCC-cHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----C----CCcEEEcCChHHHHHHHH
Q psy5413          64 VNIRTVDIRSDTISKP-TMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----G----KEAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        64 ~~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g----~~~~~~~~~Gs~a~~~al  133 (285)
                      .|+++++|..+++..+ ++++++++.+.... ...|+...+..+|++.+++++    +    .+.+++++|+++|+..++
T Consensus        29 ~G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~  108 (382)
T d1b5pa_          29 QGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLF  108 (382)
T ss_dssp             TTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHH
Confidence            3678999999998875 56899998876653 467877777889999999886    2    235688888899999999


Q ss_pred             HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413         134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVE  211 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~  211 (285)
                      .+++ .+||.|++++++|.......         ...|.+++.++..+  ++.+|++++++++++       ++++++++
T Consensus       109 ~~l~-~~gd~vl~~~P~y~~~~~~~---------~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-------~~~~i~~~  171 (382)
T d1b5pa_         109 QAIL-DPGDEVIVLSPYWVSYPEMV---------RFAGGVVVEVETLPEEGFVPDPERVRRAITP-------RTKALVVN  171 (382)
T ss_dssp             HHHC-CTTCEEEEEESCCTHHHHHH---------HHTTCEEEEEECCGGGTTCCCHHHHHTTCCT-------TEEEEEEE
T ss_pred             HHhC-CCCCEEEECCCCcHHHHHHH---------HHhcCeEEEEecccccccCCCHHHHHHhCCC-------CCeEEEEC
Confidence            9987 58999999888765443322         23488888887543  456899999999977       89999999


Q ss_pred             cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---------hhcccCCeEEEecccccCc--ceeEEeecCc
Q psy5413         212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---------EVCASVDTVMFCLSKGLGA--PVGSILAGPE  280 (285)
Q Consensus       212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~~~~dv~~~s~sK~l~~--p~gg~~~~~~  280 (285)
                      +|+||| |.+++.+++++|+++|++||+++|.||+|..+.         ......-+++.|+||.++.  .+.|++++++
T Consensus       172 ~P~NPT-G~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~G~~~~~~  250 (382)
T d1b5pa_         172 SPNNPT-GAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPK  250 (382)
T ss_dssp             SSCTTT-CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCH
T ss_pred             CCCCCc-chhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCcHhheEEEEECH
Confidence            999999 999999999999999999999999999987211         1112222448999998864  6788999888


Q ss_pred             cccc
Q psy5413         281 EFIQ  284 (285)
Q Consensus       281 ~~i~  284 (285)
                      ++++
T Consensus       251 ~~i~  254 (382)
T d1b5pa_         251 EVIK  254 (382)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.9e-23  Score=180.76  Aligned_cols=207  Identities=49%  Similarity=0.793  Sum_probs=162.4

Q ss_pred             eeeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEec
Q psy5413          68 TVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVG  147 (285)
Q Consensus        68 ~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~  147 (285)
                      ++||.+++.+.|+|+|++|+.+...++..|+.+|...+||+.+++++|.+.+++++|||+|++.++++++ ++|+.+++.
T Consensus         1 ~~~~~~~~~t~p~p~v~~A~~~a~~g~~~yg~~p~~~~le~~lA~~~G~~~~~~~~sGt~A~~~al~a~~-~~g~~~~~~   79 (343)
T d1m6sa_           1 MIDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHT-QRGDEVILE   79 (343)
T ss_dssp             CEECSCGGGCCCCHHHHHHHHTCCCCCGGGTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHC-CTTCEEEEE
T ss_pred             CcccccccCCCCCHHHHHHHHhhhcCCcccCCCHHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHHHh-ccCCceecc
Confidence            4899999999999999999998888888999999999999999999999999999999999999999987 589988888


Q ss_pred             CCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHH
Q psy5413         148 DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWL  227 (285)
Q Consensus       148 ~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l  227 (285)
                      ...|.+........      ...+..+..++. ..+..|++.+++.+... ..+..+++.++++...+..||.+++.+++
T Consensus        80 ~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  151 (343)
T d1m6sa_          80 ADSHIFWYEVGAMA------VLSGVMPHPVPG-KNGAMDPDDVRKAIRPR-NIHFPRTSLIAIENTHNRSGGRVVPLENI  151 (343)
T ss_dssp             TTCHHHHSSTTHHH------HHTCCEEEEECE-ETTEECHHHHHHHSCCS-CTTSCCEEEEEEESSBTTTTSBCCCHHHH
T ss_pred             ccccceeeeccccc------ccccceeecccc-ccCccCHHHHHHhhhhh-hcccccccccccccccccCCceecCHHHH
Confidence            87776554433333      233555555554 45567999999999773 33445677777777555555999999999


Q ss_pred             HHHHHHHHHcCCeEEEeCccCC---------hhhhcccCCeEEEecccccCcceeEEeecCcccc
Q psy5413         228 RELKARCQEHNIPVHMDGARLP---------LAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFI  283 (285)
Q Consensus       228 ~~i~~la~~~gi~li~Dea~~~---------~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i  283 (285)
                      ++|+++|++||+++++|+++..         ........+..+++.+|+.++..++++.+.++++
T Consensus       152 ~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  216 (343)
T d1m6sa_         152 KEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFI  216 (343)
T ss_dssp             HHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHHH
T ss_pred             HHHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccccccccccHHHH
Confidence            9999999999999999999871         1112234455677777877776777777766544

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.91  E-value=6.5e-24  Score=189.19  Aligned_cols=203  Identities=12%  Similarity=0.072  Sum_probs=158.5

Q ss_pred             cCCeeeeeccCCcCCC-cHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----CC----CcEEEcCChHHHHHHHH
Q psy5413          64 VNIRTVDIRSDTISKP-TMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----GK----EAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        64 ~~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g~----~~~~~~~~Gs~a~~~al  133 (285)
                      .|+++++|+.+++..+ ++.+++++.+.... ...|++..+..+|++.+++++    |.    +.+++++|+++++..++
T Consensus        28 ~g~~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~  107 (388)
T d1j32a_          28 EGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLM  107 (388)
T ss_dssp             TTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHH
Confidence            4678999999988885 56889998876653 457887777888999998875    32    34688888899999999


Q ss_pred             HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413         134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSLVCVE  211 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~  211 (285)
                      .+++ .+||.|++++++|........         ..+.+++.++..  .++.+|++++++++++       ++++++++
T Consensus       108 ~~~~-~~gd~Vlv~~P~y~~~~~~~~---------~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~-------~~~~~~~~  170 (388)
T d1j32a_         108 LAMI-EPGDEVIIPAPFWVSYPEMVK---------LAEGTPVILPTTVETQFKVSPEQIRQAITP-------KTKLLVFN  170 (388)
T ss_dssp             HHHC-CTTCEEEEESSCCTHHHHHHH---------HTTCEEEEECCCGGGTTCCCHHHHHHHCCT-------TEEEEEEE
T ss_pred             HHHh-CCCCEEEEcCCCcHHHHHHHH---------HhcCeEEEEecccccccCCCHHHHHHhCCC-------CCeEEEEC
Confidence            9987 599999998887654433222         336677776653  3456899999999987       88999999


Q ss_pred             cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC----------hhhhcc---cCCeEEEecccccCc--ceeEEe
Q psy5413         212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP----------LAEVCA---SVDTVMFCLSKGLGA--PVGSIL  276 (285)
Q Consensus       212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~----------~~~~~~---~~dv~~~s~sK~l~~--p~gg~~  276 (285)
                      +|+||| |.+++.+++++|+++|++||+++|+||+|..          +.....   ...+++.|+||.++.  .+.|++
T Consensus       171 ~P~NPT-G~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~  249 (388)
T d1j32a_         171 TPSNPT-GMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFL  249 (388)
T ss_dssp             SSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEE
T ss_pred             CCCCCC-CcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEE
Confidence            999999 9999999999999999999999999999861          111111   123559999998863  678899


Q ss_pred             ecCccccc
Q psy5413         277 AGPEEFIQ  284 (285)
Q Consensus       277 ~~~~~~i~  284 (285)
                      ++++++++
T Consensus       250 ~~~~~~~~  257 (388)
T d1j32a_         250 AGPVPLVK  257 (388)
T ss_dssp             ECCHHHHH
T ss_pred             EECHHHHH
Confidence            98887764

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.90  E-value=1.8e-23  Score=186.03  Aligned_cols=202  Identities=15%  Similarity=0.115  Sum_probs=158.8

Q ss_pred             CCeeeeeccCCcCCC-cHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcC---------CCcEEEcCChHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISKP-TMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAG---------KEAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g---------~~~~~~~~~Gs~a~~~al  133 (285)
                      ++.+++|..+++..+ ++.+++++.+.+.. ...|++..+..+|++.+++++.         .+.+++++++++++..++
T Consensus        24 ~~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~  103 (388)
T d1gdea_          24 MKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGL  103 (388)
T ss_dssp             CTTCEECCCCSCCSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHH
T ss_pred             CCCeEECCCCCCCCCCCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHH
Confidence            356899998888764 56888998876653 4578877778999999998852         234688999999999999


Q ss_pred             HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413         134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVE  211 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~  211 (285)
                      .+++ .+||.|+++.++|.......         ...|.+++.++..+  ++.+|+++|++.+++       ++++++++
T Consensus       104 ~~l~-~~gd~vlv~~P~y~~~~~~~---------~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~i~~~  166 (388)
T d1gdea_         104 SAFL-KDGEEVLIPTPAFVSYAPAV---------ILAGGKPVEVPTYEEDEFRLNVDELKKYVTD-------KTRALIIN  166 (388)
T ss_dssp             TTTC-CTTCEEEEEESCCTTHHHHH---------HHHTCEEEEEECCGGGTTCCCHHHHHHHCCT-------TEEEEEEE
T ss_pred             HHhc-CCCCEEEECCCCcHHHHHHH---------HHcCCEEEEeecccccCCCCCHHHHHHhCcc-------CCeEEEEC
Confidence            9987 59999999888775543322         23488888888643  456899999999987       89999999


Q ss_pred             cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhcccCC--eEEEecccccCc--ceeEEee
Q psy5413         212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVCASVD--TVMFCLSKGLGA--PVGSILA  277 (285)
Q Consensus       212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~~~~d--v~~~s~sK~l~~--p~gg~~~  277 (285)
                      +|+||| |.+++.+++++|+++|++||++||+||+|..+          ..+....+  +++.|+||.++.  .+.|+++
T Consensus       167 ~P~NPt-G~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii  245 (388)
T d1gdea_         167 SPCNPT-GAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVA  245 (388)
T ss_dssp             SSCTTT-CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEE
T ss_pred             CCcCCC-CCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEE
Confidence            999999 99999999999999999999999999998722          11112223  449999998763  7788898


Q ss_pred             cCccccc
Q psy5413         278 GPEEFIQ  284 (285)
Q Consensus       278 ~~~~~i~  284 (285)
                      +++++++
T Consensus       246 ~~~~~~~  252 (388)
T d1gdea_         246 APSWIIE  252 (388)
T ss_dssp             CCHHHHH
T ss_pred             eeccchh
Confidence            8877653

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.90  E-value=4.3e-23  Score=187.23  Aligned_cols=199  Identities=15%  Similarity=0.179  Sum_probs=152.4

Q ss_pred             CeeeeeccCCcCCC-cHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeE
Q psy5413          66 IRTVDIRSDTISKP-TMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEI  144 (285)
Q Consensus        66 ~~~~~~~~~~~~~~-~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~v  144 (285)
                      .-++||.+++++.+ .+.+..++   ..++..|+.+|...+||+.+++++|.+.+++++||++|+.+++++++ ++|++|
T Consensus        42 ~v~iDl~sDs~t~am~~~~~aa~---~~GDd~Y~~dpt~~~lE~~~a~l~G~e~al~~~SGt~An~~a~~~l~-~~Gd~V  117 (456)
T d1c7ga_          42 DIYIDLLTDSGTNAMSDKQWAGM---MIGDEAYAGSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAI-KPGQYV  117 (456)
T ss_dssp             GCSEECSCSSSCCCEEHHHHHHT---TSCCCCSSSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHC-CTTEEE
T ss_pred             ceeeEcccCCCcccchHHHHHHH---hccchhccCCchHHHHHHHHHHHhCCCeEEECCCHHHHHHHHHHHhc-CCCCeE
Confidence            45799999998865 33333332   36788999999999999999999999999999999999999999987 699988


Q ss_pred             EecCCcceeeecccccccccccccccceeeeee----------ecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         145 IVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGV----------TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       145 i~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~----------~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      ++....+.  ... .+.       ..|...+.+          ....++.+|+++|+++|+++.   ..+++++++++++
T Consensus       118 i~~~~f~~--~~~-~i~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~---~~~~~~i~~e~~~  184 (456)
T d1c7ga_         118 AGNMYFTT--TRF-HQE-------KNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKG---AENIAYICLAVTV  184 (456)
T ss_dssp             EESSCCHH--HHH-HHH-------HTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHC---GGGEEEEEEESSB
T ss_pred             ecCcchHH--HHH-HHH-------HcCceeeeccccccccccccCCccccCCHHHHHHHhhhcC---CccceeEEeeecc
Confidence            86533211  100 000       112222111          122456799999999998742   2378899999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-----------------Ch----hhhcccCCeEEEecccccCccee
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-----------------PL----AEVCASVDTVMFCLSKGLGAPVG  273 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-----------------~~----~~~~~~~dv~~~s~sK~l~~p~g  273 (285)
                      |..||.+++.+++++|.++|++||+.+|+|++|.                 ++    ......+|++++|++|.++++.|
T Consensus       185 n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~G  264 (456)
T d1c7ga_         185 NLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG  264 (456)
T ss_dssp             TTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSC
T ss_pred             cccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccce
Confidence            9999999999999999999999999999999975                 11    11235789999999999999999


Q ss_pred             EEeecCcc
Q psy5413         274 SILAGPEE  281 (285)
Q Consensus       274 g~~~~~~~  281 (285)
                      |+++++++
T Consensus       265 G~i~~~~~  272 (456)
T d1c7ga_         265 GFLCMNDE  272 (456)
T ss_dssp             EEEEESCH
T ss_pred             eEEEcCCH
Confidence            99987653

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=7e-23  Score=183.02  Aligned_cols=201  Identities=18%  Similarity=0.172  Sum_probs=157.5

Q ss_pred             cCCeeeeeccCCcCC--CcHHHHHHHHhcccC--CC------CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHH
Q psy5413          64 VNIRTVDIRSDTISK--PTMEMKNYMFNCEVG--DD------VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        64 ~~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~--~~------~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al  133 (285)
                      +|++++||.+.++-+  .||++++++.+++..  ..      .++..+.+.+||+.+++++|.+.+++++||++|+..++
T Consensus        43 dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g~e~al~~~SG~~An~~~i  122 (401)
T d1fc4a_          43 DGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLF  122 (401)
T ss_dssp             TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTH
T ss_pred             CCCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhhcCCceEEecchhhhhHHHH
Confidence            378899999876644  499999998877642  11      12356778999999999999999999999999999999


Q ss_pred             HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      .++. .+++.|+++...|.+.......+         +.++..++.     .|.++++++++...+ ++.+.++|+++++
T Consensus       123 ~~l~-~~~d~i~~d~~~h~s~~~G~~~~---------~a~~~~~~~-----~d~~~le~~~~~~~~-~~~~~~liv~egv  186 (401)
T d1fc4a_         123 ETLL-GAEDAIISDALNHASIIDGVRLC---------KAKRYRYAN-----NDMQELEARLKEARE-AGARHVLIATDGV  186 (401)
T ss_dssp             HHHC-CTTCEEEEETTCCHHHHHHHHTS---------CSEEEEECT-----TCHHHHHHHHHHHHH-TTCSSEEEEEESE
T ss_pred             HHhc-CCCcEEEeCCcchHHHHcccccc---------CceEEEEcC-----CChHHHHHHHHHhhh-cccCceEEEEcCC
Confidence            9887 58898998888898775533333         445555554     377777776654221 3446789999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC---------Chh---hhcccCCeEEEecccccCcceeEEeecCcc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL---------PLA---EVCASVDTVMFCLSKGLGAPVGSILAGPEE  281 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~---------~~~---~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~  281 (285)
                      .+.. |.+.|   |++++++|++||+++|+||+|+         +..   ......|+++.|++|.++++.||+++++++
T Consensus       187 ~s~~-G~~~~---L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~Gg~v~g~~~  262 (401)
T d1fc4a_         187 FSMD-GVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKE  262 (401)
T ss_dssp             ETTT-TEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEECHH
T ss_pred             CCCC-Cchhh---hhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCCcccccCCHH
Confidence            9887 89999   9999999999999999999988         111   123467899999999998888999999988


Q ss_pred             ccc
Q psy5413         282 FIQ  284 (285)
Q Consensus       282 ~i~  284 (285)
                      +++
T Consensus       263 ~~~  265 (401)
T d1fc4a_         263 VVE  265 (401)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.89  E-value=9.4e-23  Score=183.66  Aligned_cols=235  Identities=19%  Similarity=0.146  Sum_probs=159.3

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC-CCccCChhHHH
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD-DVYLEDPTCKE  105 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~-~~y~~~~~~~~  105 (285)
                      |..+.++.+.++|+..++.+++....|+..                  +.++.||+|.+|+++++... ..........+
T Consensus        35 P~~i~~a~G~~l~D~~G~~ylD~~~~~~~~------------------~lGh~hp~i~~ai~~~~~~~~~~~~~~~~~~~   96 (427)
T d2gsaa_          35 PIVFDRVKDAYAWDVDGNRYIDYVGTWGPA------------------ICGHAHPEVIEALKVAMEKGTSFGAPCALENV   96 (427)
T ss_dssp             CCCEEEEEBTEEEETTSCEEEESSGGGTTT------------------TTCBTCHHHHHHHHHHHTTCSCCSSCCHHHHH
T ss_pred             CcEEEEeecCEEEECCCCEEEEechhHHHH------------------hccCCcHHHHHHHHHHHHhcCccccchhHHHH
Confidence            666777777888876655555554444432                  23678999999999887643 23334555677


Q ss_pred             HHHHHHhHcC-CCcEEEcCChHHHHHHHHHHccccCCCe-EEe-cCCcceeeeccccccccccccc----ccceeeeeee
Q psy5413         106 LQEKAAKLAG-KEAAIFVPSGTMGNLIAIMTHCDRRDSE-IIV-GDCSHIMLWEQGGASQTSVYSQ----IGRVLMRGVT  178 (285)
Q Consensus       106 l~~~la~~~g-~~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi~-~~~~h~~~~~~~~~~~~~~~~~----~~g~~~~~~~  178 (285)
                      +.+.+.+..+ .+.++|++||++|++.|++++...+|+. |+. ...||+.+.....+.....+..    ..+......+
T Consensus        97 la~~~~~~~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~  176 (427)
T d2gsaa_          97 LAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTA  176 (427)
T ss_dssp             HHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHT
T ss_pred             HHHHHHhhCCccccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCcc
Confidence            8888888764 4567999999999999999987655654 333 5788987754433321111100    0000000000


Q ss_pred             c-CCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----hhh
Q psy5413         179 N-QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----AEV  253 (285)
Q Consensus       179 ~-~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----~~~  253 (285)
                      . ......|++++++.+++    +.+++++|++|+.++.+|....|++++++|+++|++||+++|+||+++++    ...
T Consensus       177 ~~~~~~~~~~~~le~~~~~----~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~~~~  252 (427)
T d2gsaa_         177 NTLTTPYNDLEAVKALFAE----NPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGV  252 (427)
T ss_dssp             TEEEECTTCHHHHHHHHTT----STTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTCH
T ss_pred             ceeccCcchHHHHHHHHHh----CCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceecccch
Confidence            0 00113599999999987    45589999999999887666778899999999999999999999999843    233


Q ss_pred             cccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413         254 CASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       254 ~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      .++.|+.  +.+++|.+++  |.++++. ++++++
T Consensus       253 ~~~~gi~PDi~~~gK~lggG~p~~a~~~-~~~i~~  286 (427)
T d2gsaa_         253 QEKFGVTPDLTTLGKIIGGGLPVGAYGG-KREIMQ  286 (427)
T ss_dssp             HHHTTCCCSEEEECGGGGTTSCCEEEEE-CHHHHT
T ss_pred             HHhcCCCHHHHhhhhccCCCcceeeeee-hHHHHH
Confidence            4556666  7777899988  8877654 455543

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=5.1e-23  Score=183.06  Aligned_cols=223  Identities=15%  Similarity=0.115  Sum_probs=155.5

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC--CC-CccCChhH
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG--DD-VYLEDPTC  103 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~--~~-~y~~~~~~  103 (285)
                      |..+.++++.+.|+..++.+++.+..++.                  .+.++.||++.+|+.+++..  .. .....+..
T Consensus        20 p~~i~ra~G~~l~d~dG~~ylD~~~g~~~------------------~~lGh~hp~v~~a~~~~~~~~~~~~~~~~~~~~   81 (387)
T d1vefa1          20 DLLIVRGQGARVWDAEGNEYIDCVGGYGV------------------ANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMR   81 (387)
T ss_dssp             SSCEEEEEBTEEEETTSCEEEESSHHHHT------------------CTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHHH
T ss_pred             CceEEEeEcCEEEECCCCEEEEcchhHHh------------------hhhcCCcHHHHHHHHHHHHhhcccccccCCchH
Confidence            67778889999998665555444443333                  23477999999999988763  11 11235667


Q ss_pred             HHHHHHHHhHcCC--CcEEEcCChHHHHHHHHHHccccCCCeEE--ecCCcceeeecccccccccccccccc---eeeee
Q psy5413         104 KELQEKAAKLAGK--EAAIFVPSGTMGNLIAIMTHCDRRDSEII--VGDCSHIMLWEQGGASQTSVYSQIGR---VLMRG  176 (285)
Q Consensus       104 ~~l~~~la~~~g~--~~~~~~~~Gs~a~~~al~~~~~~~g~~vi--~~~~~h~~~~~~~~~~~~~~~~~~~g---~~~~~  176 (285)
                      .++.+.+.+....  ++++|++|||+|++.|++++...+++..|  ....||+.+..+..++..+.+...+.   ..+..
T Consensus        82 ~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~  161 (387)
T d1vefa1          82 GEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEF  161 (387)
T ss_dssp             HHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEE
T ss_pred             HHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceE
Confidence            7777777777544  35799999999999999998766665433  35678887754433331122221111   12223


Q ss_pred             eecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----
Q psy5413         177 VTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----  251 (285)
Q Consensus       177 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----  251 (285)
                      +|.     .|++.|++.+++       ++++|++|+.++..|....|++++++|+++|++||+++|+||+++++.     
T Consensus       162 ~p~-----~d~~~l~~~~~~-------~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~  229 (387)
T d1vefa1         162 IPY-----NDVEALKRAVDE-------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKR  229 (387)
T ss_dssp             ECT-----TCHHHHHHHCCT-------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred             eCC-----CCHHHHHHhcCC-------CeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCC
Confidence            332     389999999977       899999999999886778999999999999999999999999988542     


Q ss_pred             hhcccCCeE--EEecccccCc--ceeEEeecC
Q psy5413         252 EVCASVDTV--MFCLSKGLGA--PVGSILAGP  279 (285)
Q Consensus       252 ~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~  279 (285)
                      ...++.++.  +.+++|++++  |.++++..+
T Consensus       230 ~~~~~~~v~PDi~~~gK~l~gG~~~~~~~~~~  261 (387)
T d1vefa1         230 FAFEHFGIVPDILTLAKALGGGVPLGVAVMRE  261 (387)
T ss_dssp             STHHHHTCCCSEEEECGGGGTTSSCEEEEEEH
T ss_pred             cccccCCcCCceeeecccCCCCccccccccce
Confidence            223344444  6667799977  777766554

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=4.3e-22  Score=177.20  Aligned_cols=198  Identities=18%  Similarity=0.222  Sum_probs=154.6

Q ss_pred             eeeccCCcCCCcHHHHHHHHhcccCCCCccC------------ChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHH
Q psy5413          69 VDIRSDTISKPTMEMKNYMFNCEVGDDVYLE------------DPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        69 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~------------~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~  134 (285)
                      +.|.+..-+..++.|++++.+.......|+.            ....+++|+.+++++|.+  .++|++|+|+++..++.
T Consensus         4 iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~   83 (391)
T d1p3wa_           4 IYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIK   83 (391)
T ss_dssp             EECBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHH
T ss_pred             EEeeCccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHh
Confidence            3555555566899999999987654444331            133567899999999987  46899999999988887


Q ss_pred             Hcc---ccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413         135 THC---DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVE  211 (285)
Q Consensus       135 ~~~---~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~  211 (285)
                      ++.   .++|++|++.+..|.+........      +..|.++..++.+.++.+|+++++++|++       +|++|+++
T Consensus        84 ~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~------~~~G~~v~~v~~~~~~~~d~~~~~~~i~~-------~T~lv~is  150 (391)
T d1p3wa_          84 GAANFYQKKGKHIITSKTEHKAVLDTCRQL------EREGFEVTYLAPQRNGIIDLKELEAAMRD-------DTILVSIM  150 (391)
T ss_dssp             HHHHHHGGGCCEEEEETTSCHHHHHHHHHH------HHTTCEEEEECCCTTSCCCHHHHHHHCCT-------TEEEEECC
T ss_pred             hhhhhhcCCCCEEEEeccccchHHHHHHHH------HHcCCEEEEeCCCCCCeEcHHHHHHhCCC-------CcEEEEEE
Confidence            653   368999999988886653322222      34588999999877888999999999988       89999999


Q ss_pred             cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCcceeEEeecCcccc
Q psy5413         212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFI  283 (285)
Q Consensus       212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i  283 (285)
                      +++|+| |.++|   +++|+++||+||+++++|++|+ +   +.....++|+++.+.+||+|++..|++..+++++
T Consensus       151 ~~~n~t-G~~~~---~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~g~~g~g~~~~~~~~~  222 (391)
T d1p3wa_         151 HVNNEI-GVVQD---IAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPR  222 (391)
T ss_dssp             SBCTTT-CCBCC---HHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTB
T ss_pred             CCCCCC-eeECC---HHHHHHHhccCCcEEEEeeccccCCccccchhccccccccccccccCCCceEEEEEecchh
Confidence            999999 99999   9999999999999999999988 2   2333457899999999998776556666666554

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=1.9e-22  Score=178.17  Aligned_cols=200  Identities=16%  Similarity=0.124  Sum_probs=156.4

Q ss_pred             eeeeeccCCcCC-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCCCe
Q psy5413          67 RTVDIRSDTISK-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRDSE  143 (285)
Q Consensus        67 ~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g~~  143 (285)
                      .+|+|+.+++.. +++.+++|+.+.+.....|+...+..+||+.++++++.+.  +++++|+++++..++.+++ .+|+.
T Consensus        26 ~~I~ls~g~p~~~~p~~i~~al~~~l~~~~~Y~~~~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~-~~~d~  104 (368)
T d1v2da_          26 GAVNLGQGFPSNPPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV-GPGDE  104 (368)
T ss_dssp             TCEECCCCSCSSCCCHHHHHHHHHHTTTSCSCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC-CTTCE
T ss_pred             CCEEecCCCCCCCCCHHHHHHHHHHhhcccCCCCCcCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhccc-ccccc
Confidence            468999888876 4578999999877666788877778999999999998654  6999999999999999987 58999


Q ss_pred             EEecCCcceeeecccccccccccccccceeeeeeecC---CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCee
Q psy5413         144 IIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ---KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT  220 (285)
Q Consensus       144 vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~  220 (285)
                      |++++++|........         ..|..++.++.+   ..+.+|++++++++++       ++++|++++|+||| |.
T Consensus       105 v~~~~p~~~~~~~~~~---------~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~i~~~~p~NPt-G~  167 (368)
T d1v2da_         105 VVVLEPFFDVYLPDAF---------LAGAKARLVRLDLTPEGFRLDLSALEKALTP-------RTRALLLNTPMNPT-GL  167 (368)
T ss_dssp             EEEEESCCTTHHHHHH---------HTTCEEEEEECEEETTEEECCHHHHHTTCCT-------TEEEEEEESSCTTT-CC
T ss_pred             ccccCCcchhhhhHHH---------hcCCccceeccccccccccCCHHHHHHhhcc-------CceEEEEcCCCCcc-cc
Confidence            9988877654433222         225555544432   3456899999999988       78999999999999 99


Q ss_pred             eCCHHHHHHHHHHHHHcCCeEEEeCccCC--------h-hhhcccCCeEEEecccccCc--ceeEEeecCccccc
Q psy5413         221 VLPMQWLRELKARCQEHNIPVHMDGARLP--------L-AEVCASVDTVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       221 ~~~~~~l~~i~~la~~~gi~li~Dea~~~--------~-~~~~~~~dv~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                      +++.+++++|+++|++||+++|+||++..        . ........+++.++||.++.  .+.|+++.++++++
T Consensus       168 ~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~  242 (368)
T d1v2da_         168 VFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMP  242 (368)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHH
T ss_pred             cCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccccccccccccccccccccccc
Confidence            99999999999999999999999999761        1 11112233558899986655  67888888887764

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.2e-22  Score=181.71  Aligned_cols=227  Identities=14%  Similarity=0.083  Sum_probs=156.6

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC---CccCChhH
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD---VYLEDPTC  103 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~---~y~~~~~~  103 (285)
                      |..+.++.+.++|+..++.+++.+..++..                  +.++.||+|.+|+.+++....   .....+..
T Consensus        24 P~~i~~~~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~i~~Av~~q~~~~~~~~~~~~~~~~   85 (404)
T d2byla1          24 PVALERGKGIYLWDVEGRKYFDFLSSISAV------------------NQGHCHPKIVNALKSQVDKLTLTSRAFYNNVL   85 (404)
T ss_dssp             EEEEEEEEBTEEEETTCCEEEESSHHHHTC------------------TTCBTCHHHHHHHHHHHTTCCCCCTTEEESSH
T ss_pred             CceEEEeecCEEEECCCCEEEEecCCHHHH------------------hhcCCCHHHHHHHHHHHhhCCCcccccccchH
Confidence            666788899999986655555555444432                  227799999999998876311   12234557


Q ss_pred             HHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcccc--------CCC-eEE-ecCCcceeeecccccccccccccccce-
Q psy5413         104 KELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDR--------RDS-EII-VGDCSHIMLWEQGGASQTSVYSQIGRV-  172 (285)
Q Consensus       104 ~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~--------~g~-~vi-~~~~~h~~~~~~~~~~~~~~~~~~~g~-  172 (285)
                      .++++.++++.+.+.++|++|||+|++.|++++...        .++ .++ ....+|+.+.........+.+...++. 
T Consensus        86 ~~~~~~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~  165 (404)
T d2byla1          86 GEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPF  165 (404)
T ss_dssp             HHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSC
T ss_pred             HHHHHhhhhcccccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCC
Confidence            788999999999999999999999999999998531        122 233 356777665432222211222111111 


Q ss_pred             --eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh
Q psy5413         173 --LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL  250 (285)
Q Consensus       173 --~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~  250 (285)
                        .+..+|.     .|++++++.+.+.      ++++|++|+.++.+|....|++++++|+++|++||+++|+||+++++
T Consensus       166 ~~~~~~~p~-----~d~~~l~~~l~~~------~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGf  234 (404)
T d2byla1         166 MPGFDIIPY-----NDLPALERALQDP------NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGL  234 (404)
T ss_dssp             CTTEEEECT-----TCHHHHHHHHTST------TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred             CCCeeEecc-----cCHHHHHHhcCCC------CeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeecccccc
Confidence              1223332     3899999999652      79999999999988667788999999999999999999999998844


Q ss_pred             h-----hhcccCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413         251 A-----EVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       251 ~-----~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                      .     ...+..++.  +.+++|.+++   |.++++. +++++
T Consensus       235 gR~G~~~a~~~~gv~PDi~~~gK~l~gG~~p~~av~~-~~~i~  276 (404)
T d2byla1         235 ARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLC-DDDIM  276 (404)
T ss_dssp             TTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEE-CHHHH
T ss_pred             ccccccchhhhcCCCCCEEEECchhhCCCccceeeee-chhhh
Confidence            2     233444444  5678899987   6666554 45544

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=8.3e-22  Score=175.01  Aligned_cols=195  Identities=18%  Similarity=0.210  Sum_probs=156.4

Q ss_pred             CCeeeeeccCCcCC--CcHHHHHHHHhcccC-------C-CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK--PTMEMKNYMFNCEVG-------D-DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~-------~-~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~  134 (285)
                      |+++++|.+.++-+  .+|+++++..+++..       . ..++..+.+.+||+.|++++|.+.++++++|..|+..++.
T Consensus        37 g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g~e~al~~~SG~~an~~~i~  116 (383)
T d1bs0a_          37 DRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIA  116 (383)
T ss_dssp             TEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHH
T ss_pred             CeEEEEEEcccccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcCCCceEEecccchhhHHHHH
Confidence            67899999877665  599999998877641       1 2345678899999999999999999999999999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      ++. .+++.++++...|.+........         +..++.++.     .|++++++.+.+    +..+.++|++++++
T Consensus       117 al~-~~~d~v~~d~~~h~si~~g~~~~---------~~~~~~~~h-----nd~~~le~~l~~----~~~~~~~vv~e~v~  177 (383)
T d1bs0a_         117 AMM-AKEDRIAADRLSHASLLEAASLS---------PSQLRRFAH-----NDVTHLARLLAS----PCPGQQMVVTEGVF  177 (383)
T ss_dssp             HHC-CTTCEEEEETTCCHHHHHHHHTS---------SSEEEEECT-----TCHHHHHHHHHS----CCSSCEEEEEESBC
T ss_pred             hhc-CCCceEEeeccccHHHhhccccC---------CCcceEecc-----hHHHHHHHHhcc----cCCCceEEEecCCC
Confidence            987 58999999999998776544343         566666665     499999999876    33467899999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC---------Chhhhc-ccCCeEEEecccccCcceeEEeecCcccc
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL---------PLAEVC-ASVDTVMFCLSKGLGAPVGSILAGPEEFI  283 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~---------~~~~~~-~~~dv~~~s~sK~l~~p~gg~~~~~~~~i  283 (285)
                      +.+ |.+.|   +++|.++|++||+++++||+|+         +..... ...++++.+++|.++. .||+++++.+++
T Consensus       178 s~~-G~i~p---l~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~-~Gg~v~~~~~~~  251 (383)
T d1bs0a_         178 SMD-GDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGV-SGAAVLCSSTVA  251 (383)
T ss_dssp             TTT-CCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSS-CCEEEEECHHHH
T ss_pred             CCC-Ccccc---hhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCccccccccccccccc-cccccccchhHH
Confidence            999 99999   9999999999999999999988         111111 2345678999999997 577787776654

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.87  E-value=3.2e-22  Score=180.50  Aligned_cols=236  Identities=17%  Similarity=0.173  Sum_probs=154.7

Q ss_pred             CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC--CCC-ccCChh
Q psy5413          26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG--DDV-YLEDPT  102 (285)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~--~~~-y~~~~~  102 (285)
                      .|..+.++.+.++|+..++.+++.+..++..                  +.++.+|+|.+|+.+++..  +.. ...++.
T Consensus        23 ~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~   84 (431)
T d1zoda1          23 EPMIIERAKGSFVYDADGRAILDFTSGQMSA------------------VLGHCHPEIVSVIGEYAGKLDHLFSEMLSRP   84 (431)
T ss_dssp             CSSCCCEEEBTEEECTTCCEEEETTHHHHTC------------------TTCBTCHHHHHHHHHHHHHCCCCCTTCCCHH
T ss_pred             CCCeEEEeecCEEEECCCCEEEEcccCHHhh------------------hhcCCCHHHHHHHHHHHhhccccccccccHH
Confidence            3777888888888886665555555444432                  2377899999999988763  211 114566


Q ss_pred             HHHHHHHHHhHc--CCCcEEEcCChHHHHHHHHHHccccCCCeEEe--cCCcceeeeccccccccccc----ccccceee
Q psy5413         103 CKELQEKAAKLA--GKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIV--GDCSHIMLWEQGGASQTSVY----SQIGRVLM  174 (285)
Q Consensus       103 ~~~l~~~la~~~--g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~--~~~~h~~~~~~~~~~~~~~~----~~~~g~~~  174 (285)
                      ..++.++|++..  +.+.++|++|||+|++.|++++...+|+..++  ...||+.+...........+    ....+...
T Consensus        85 ~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~  164 (431)
T d1zoda1          85 VVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFA  164 (431)
T ss_dssp             HHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEE
T ss_pred             HHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCcee
Confidence            788999999986  56888999999999999999987666664333  57888776443222211111    11112222


Q ss_pred             eeeecCCC-------CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCcc
Q psy5413         175 RGVTNQKD-------GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGAR  247 (285)
Q Consensus       175 ~~~~~~~~-------~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~  247 (285)
                      +..+....       ...+.++++.........+.+++++|++|+.++..|....|++++++|+++|++||++||+||++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~  244 (431)
T d1zoda1         165 IPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQ  244 (431)
T ss_dssp             ECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTT
T ss_pred             eeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEecccc
Confidence            22221110       01123333333221111234589999999999887677789999999999999999999999998


Q ss_pred             CChh-----hhcccCCeE--EEecccccCc--ceeEEeecC
Q psy5413         248 LPLA-----EVCASVDTV--MFCLSKGLGA--PVGSILAGP  279 (285)
Q Consensus       248 ~~~~-----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~  279 (285)
                      +++.     ...++.++.  +.+++|++++  |.++++..+
T Consensus       245 tG~gRtG~~~~~~~~gv~PDi~~~gK~l~gG~p~~av~~~~  285 (431)
T d1zoda1         245 TGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSA  285 (431)
T ss_dssp             TTTTTTSSSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECH
T ss_pred             ccccccccccccccCCCCcchhccccccccccccceeeeee
Confidence            8442     333444444  6677799887  878776654

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=1.4e-21  Score=172.82  Aligned_cols=203  Identities=17%  Similarity=0.117  Sum_probs=155.5

Q ss_pred             cCCeeeeeccCCcCCC-cHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHHHHHH
Q psy5413          64 VNIRTVDIRSDTISKP-TMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGNLIAI  133 (285)
Q Consensus        64 ~~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~~~al  133 (285)
                      .|+.+++|+.+++..+ ++.+++++.+.... ...|++..+..+|++.+++++.        .+.+++++++++|+..++
T Consensus        26 ~G~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~  105 (375)
T d1o4sa_          26 KGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAF  105 (375)
T ss_dssp             TTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHH
T ss_pred             CCCCeEECCCcCCCCCCCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHHHH
Confidence            3678999999998874 56889998876553 4568877778999999998853        234689999999999999


Q ss_pred             HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413         134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSLVCVE  211 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~  211 (285)
                      .+++ .+|+.|+++++++........         ..+.....++..  .++.+|.+.++....+       ++++++++
T Consensus       106 ~~l~-~~gd~vlv~~P~y~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~  168 (375)
T d1o4sa_         106 MALL-DPGDEVIVFSPVWVSYIPQII---------LAGGTVNVVETFMSKNFQPSLEEVEGLLVG-------KTKAVLIN  168 (375)
T ss_dssp             HHHC-CTTCEEEEEESCCTTHHHHHH---------HTTCEEEEEECCGGGTTCCCHHHHHHTCCT-------TEEEEEEE
T ss_pred             HHHh-CCCCEEEEccCccccchhhhh---------ccccccccccccccccccchhHHHHHhhcc-------CccEEEEe
Confidence            9988 599999998877644433222         224455544432  4556889998888877       89999999


Q ss_pred             cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC---------hhhhcccCC--eEEEecccccCc--ceeEEeec
Q psy5413         212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP---------LAEVCASVD--TVMFCLSKGLGA--PVGSILAG  278 (285)
Q Consensus       212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~---------~~~~~~~~d--v~~~s~sK~l~~--p~gg~~~~  278 (285)
                      +|+||| |.+++.+++++|+++|++|+++||.||+|..         .....+..+  +++.|+||.++.  .+.|++++
T Consensus       169 nP~NPT-G~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~  247 (375)
T d1o4sa_         169 SPNNPT-GVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLIS  247 (375)
T ss_dssp             SSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEEC
T ss_pred             CCCCCc-cCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCccccccccc
Confidence            999999 9999999999999999999999999999771         112222223  349999998763  78889988


Q ss_pred             Cccccc
Q psy5413         279 PEEFIQ  284 (285)
Q Consensus       279 ~~~~i~  284 (285)
                      ++++++
T Consensus       248 ~~~~~~  253 (375)
T d1o4sa_         248 SEKVAT  253 (375)
T ss_dssp             CHHHHH
T ss_pred             cccchh
Confidence            877653

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=3.6e-22  Score=181.89  Aligned_cols=206  Identities=22%  Similarity=0.278  Sum_probs=153.9

Q ss_pred             CCeeeeeccCCcCCC-cHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCe
Q psy5413          65 NIRTVDIRSDTISKP-TMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSE  143 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~  143 (285)
                      +..++|+.++.++.+ ...+..++   ..++..|+.++...+|++.+++++|.+.+++++||++|++.+++++++ +|+.
T Consensus        40 ~~~~idl~sd~~t~~~~~~~~a~~---~~gd~~Y~~~~~~~~le~~~a~l~G~~~~~~~~sGt~A~~~a~~~~~~-~g~~  115 (467)
T d2v1pa1          40 EDVFIDLLTDSGTGAVTQSMQAAM---MRGDEAFSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIK-KREQ  115 (467)
T ss_dssp             GGCSEECSCCTTCSCCCHHHHHHT---TSCCCCSSSCHHHHHHHHHHHHHTCCSEEEEECSSTTTHHHHHHHHHH-HHHH
T ss_pred             cceeeeccccccchhhHHHHHhhc---cccchhhcCCchHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHhh-ccce
Confidence            345799999988765 33333333   246788999999999999999999999999999999999999999874 5654


Q ss_pred             EEecCCcce------eeecccccccccccccccceeeeeeecC----------CCCCCCHHHHHHHhcccccccCCceEE
Q psy5413         144 IIVGDCSHI------MLWEQGGASQTSVYSQIGRVLMRGVTNQ----------KDGTFDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       144 vi~~~~~h~------~~~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~~~~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                      +++.+..|.      +.....+..      ...|..++.++.+          ..+.+|++++++.+++.   +...+++
T Consensus       116 ~~~~~~~~~i~~~~~~~~~~~~~~------~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~---~~~~~~~  186 (467)
T d2v1pa1         116 EKGLDRSKMVAFSNYFFDTTQGHS------QINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEV---GPNNVPY  186 (467)
T ss_dssp             HHCCCTTTCEEEESSCCHHHHHHH------HHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHH---CGGGCCC
T ss_pred             EecCCCCcEEEEecccccccHHHH------HHcCCeeeecccccccccccccccccCCCHHHHHHHHhhc---Cccccce
Confidence            443322211      111111111      2336666555432          23568999999999764   2336899


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C----------------h----hhhcccCCeEEEeccc
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P----------------L----AEVCASVDTVMFCLSK  266 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~----------------~----~~~~~~~dv~~~s~sK  266 (285)
                      |++++++|..||.+++.++|++|+++|++||++||+|++|. +                .    ......+|+++++.+|
T Consensus       187 i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K  266 (467)
T d2v1pa1         187 IVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKK  266 (467)
T ss_dssp             EEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSS
T ss_pred             eeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCC
Confidence            99999999998999999999999999999999999999976 0                0    1223578999999999


Q ss_pred             ccCcceeEEeecCcccc
Q psy5413         267 GLGAPVGSILAGPEEFI  283 (285)
Q Consensus       267 ~l~~p~gg~~~~~~~~i  283 (285)
                      .+++|.||+++.+++.+
T Consensus       267 ~~~~~~gg~i~~~~~~~  283 (467)
T d2v1pa1         267 DAMVPMGGLLCMKDDSF  283 (467)
T ss_dssp             TTCCSSCEEEEECSGGG
T ss_pred             CCCCCCceeEEecchhh
Confidence            99999999998876543

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.86  E-value=2.9e-21  Score=172.24  Aligned_cols=196  Identities=18%  Similarity=0.080  Sum_probs=152.0

Q ss_pred             cCCeeeeeccCCcC---C-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----CC----CcEEEcCChHHHHH
Q psy5413          64 VNIRTVDIRSDTIS---K-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----GK----EAAIFVPSGTMGNL  130 (285)
Q Consensus        64 ~~~~~~~~~~~~~~---~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g~----~~~~~~~~Gs~a~~  130 (285)
                      .|+++++|+.++|.   . +++.+++++.+.... ...|++..+..+|++.+++++    |.    +.+++++++++++.
T Consensus        28 ~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~  107 (395)
T d1xi9a_          28 KGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQ  107 (395)
T ss_dssp             TTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred             CCCCeEECCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhhh
Confidence            47789999988763   3 566899998877654 456887777889999998885    33    34688888999999


Q ss_pred             HHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEEE
Q psy5413         131 IAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSLV  208 (285)
Q Consensus       131 ~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v  208 (285)
                      .++.+++ .+||+|++++++|.......         ...|.+++.++..  .++.+|++++++.+.+       ++++|
T Consensus       108 ~~~~~~~-~~Gd~vlv~~P~y~~~~~~~---------~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~-------~~~~v  170 (395)
T d1xi9a_         108 LIFGALL-DPGDEILVPGPSYPPYTGLV---------KFYGGKPVEYRTIEEEDWQPDIDDIRKKITD-------RTKAI  170 (395)
T ss_dssp             HHHHHHC-CTTCEEEEEESCCHHHHHHH---------HHTTCEEEEEEEEGGGTSEECHHHHHHHCCT-------TEEEE
T ss_pred             hhhhhhc-CCCCEEEEcCCccccchhhh---------hhcCCEEEEEeccccccccchHHHHHHhhcc-------cccEE
Confidence            9999887 59999999888875443322         2347787777642  3556899999999987       88999


Q ss_pred             EEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC---------hhhhcccCCeE-EEecccccCc--ceeEEe
Q psy5413         209 CVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP---------LAEVCASVDTV-MFCLSKGLGA--PVGSIL  276 (285)
Q Consensus       209 ~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~---------~~~~~~~~dv~-~~s~sK~l~~--p~gg~~  276 (285)
                      ++++|+||| |.+++.+++++|+++|++||+++|.||+|..         .........++ +.|+||.++.  .+.|++
T Consensus       171 ~l~~P~NPT-G~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRvG~~  249 (395)
T d1xi9a_         171 AVINPNNPT-GALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYM  249 (395)
T ss_dssp             EEESSCTTT-CCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEE
T ss_pred             EecCCCCCc-cchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccchhhcEee
Confidence            999999999 9999999999999999999999999999761         12222333444 8999998764  566654


Q ss_pred             e
Q psy5413         277 A  277 (285)
Q Consensus       277 ~  277 (285)
                      +
T Consensus       250 ~  250 (395)
T d1xi9a_         250 Y  250 (395)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.85  E-value=4.1e-21  Score=170.34  Aligned_cols=198  Identities=16%  Similarity=0.118  Sum_probs=157.0

Q ss_pred             CCeeeeeccCCcCC--CcHHHHHHHHhcccC-------C-CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISK--PTMEMKNYMFNCEVG-------D-DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        65 ~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~-------~-~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~  134 (285)
                      ++++++|+++++-+  .+|+++++..+.+..       . ..++..+.+.+||+.+++++|.+.++++++|..|+..++.
T Consensus        44 ~~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~e~all~~sG~~An~~~i~  123 (396)
T d2bwna1          44 KQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLS  123 (396)
T ss_dssp             EEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHH
T ss_pred             CeEEEEEEcccccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhCCCceeeeecchHHHHHHHH
Confidence            57899999888777  789999998776541       1 2345667899999999999999999999999999999998


Q ss_pred             Hcc-ccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         135 THC-DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       135 ~~~-~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      ++. .++++.|+.+...|.+......++         +.+++.++.     .|++++++.++...   ..+.++|+++.+
T Consensus       124 ~l~~~~~~d~i~~D~~~Hasi~~g~~ls---------~a~~~~f~H-----nd~~~l~~l~~~~~---~~~~~~iv~egv  186 (396)
T d2bwna1         124 TLRVLFPGLIIYSDSLNHASMIEGIKRN---------AGPKRIFRH-----NDVAHLRELIAADD---PAAPKLIAFESV  186 (396)
T ss_dssp             HHHHHSTTCEEEEETTCCHHHHHHHHHS---------CCCEEEECT-----TCHHHHHHHHHHSC---TTSCEEEEEESB
T ss_pred             HHhcccCCCceeehhhhhhccchhhhcc---------ccCceEeec-----chHHHhhhHHhhhc---ccCceeEEEEee
Confidence            864 246777777888887765544444         667666665     37888887776432   225679999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC---------Chh---hhcccCCeEEEecccccCcceeEEeecCcc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL---------PLA---EVCASVDTVMFCLSKGLGAPVGSILAGPEE  281 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~---------~~~---~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~  281 (285)
                      .+.+ |.+.|   |++|.++|++||+++++||+|+         +..   .+....|+++.|++|.+|+ .||+++++++
T Consensus       187 ySmd-Gd~ap---l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~-~Gg~v~~~~~  261 (396)
T d2bwna1         187 YSMD-GDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGV-FGGYIAASAR  261 (396)
T ss_dssp             CTTT-CCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCS-CCEEEEECHH
T ss_pred             ccCc-ccccc---cHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccc-cccccchhHH
Confidence            9999 99999   9999999999999999999988         221   1235678999999999998 7899999887


Q ss_pred             ccc
Q psy5413         282 FIQ  284 (285)
Q Consensus       282 ~i~  284 (285)
                      +++
T Consensus       262 ~i~  264 (396)
T d2bwna1         262 MVD  264 (396)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.85  E-value=3.2e-21  Score=171.82  Aligned_cols=202  Identities=12%  Similarity=0.030  Sum_probs=147.6

Q ss_pred             cccCCeeeeeccCCcCCC-cHHHHHHHHhccc-CCCCccCChhHHHHHHHHHhHc----CC----CcEEEcCChHHHHHH
Q psy5413          62 GKVNIRTVDIRSDTISKP-TMEMKNYMFNCEV-GDDVYLEDPTCKELQEKAAKLA----GK----EAAIFVPSGTMGNLI  131 (285)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~-~~~v~~a~~~~~~-~~~~y~~~~~~~~l~~~la~~~----g~----~~~~~~~~Gs~a~~~  131 (285)
                      ...|+.+++|..+.+..+ ++++++|+.+.+. +...|..  ...+||+.+++++    |.    +.+++++|+++|+..
T Consensus        27 ~~~g~~vi~l~~g~pdf~~p~~v~~al~~~~~~~~~~Y~~--g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~  104 (394)
T d1c7na_          27 PEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTG--PTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFN  104 (394)
T ss_dssp             TTCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHH
T ss_pred             HhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhCCCcCCCC--CCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhh
Confidence            335778999999998886 5689999887654 3445642  2468999999886    32    346899999999999


Q ss_pred             HHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeec---CCCCCCCHHHHHHHhcccccccCCceEEE
Q psy5413         132 AIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN---QKDGTFDLDEMEAKFSTADNIHCASTSLV  208 (285)
Q Consensus       132 al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~d~~~l~~~i~~~~~~~~~~~~~v  208 (285)
                      ++.+++ ++||+|++..+++........         ..|...+.++.   +..+.+|.+.++.++...      ++++|
T Consensus       105 ~~~~~~-~pgd~vi~~~p~~~~~~~~~~---------~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~------~~~~i  168 (394)
T d1c7na_         105 AVREFT-KPGDGVIIITPVYYPFFMAIK---------NQERKIIECELLEKDGYYTIDFQKLEKLSKDK------NNKAL  168 (394)
T ss_dssp             HHHHHC-CTTCEEEECSSCCTHHHHHHH---------TTTCEEEECCCEEETTEEECCHHHHHHHHTCT------TEEEE
T ss_pred             hhcccc-ccccccccccCcccchhhHHh---------hhhhcccccccccccccccchhhhhhhhhccc------cceEE
Confidence            999987 699999998766544333222         23656665553   223457888888887542      79999


Q ss_pred             EEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhc---ccCCeEEEecccccCc--ce-
Q psy5413         209 CVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVC---ASVDTVMFCLSKGLGA--PV-  272 (285)
Q Consensus       209 ~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~---~~~dv~~~s~sK~l~~--p~-  272 (285)
                      ++++|+||| |.+++.+++++|+++|++||++||+||+|..+.          ...   ...-+++.|+||.++.  .+ 
T Consensus       169 ~l~~P~NPT-G~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~  247 (394)
T d1c7na_         169 LFCSPHNPV-GRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGM  247 (394)
T ss_dssp             EEESSBTTT-TBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCC
T ss_pred             Eeccccccc-ceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeeccccccccccccccc
Confidence            999999999 999999999999999999999999999987221          111   1122458999998664  55 


Q ss_pred             eEEeecCccc
Q psy5413         273 GSILAGPEEF  282 (285)
Q Consensus       273 gg~~~~~~~~  282 (285)
                      |++++.++++
T Consensus       248 g~~~~~~~~i  257 (394)
T d1c7na_         248 SNIIIKNPDI  257 (394)
T ss_dssp             EEEECCCHHH
T ss_pred             ccccccChhh
Confidence            5555555554

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.85  E-value=6.3e-21  Score=170.84  Aligned_cols=199  Identities=16%  Similarity=0.125  Sum_probs=151.3

Q ss_pred             CCeeeeeccCCcCC-----CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcC--------------CCcEEEcC
Q psy5413          65 NIRTVDIRSDTISK-----PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAG--------------KEAAIFVP  123 (285)
Q Consensus        65 ~~~~~~~~~~~~~~-----~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g--------------~~~~~~~~  123 (285)
                      ++++++|..+.+..     ..+.+.+++.+....  ...|.+..+..+||+.+++++.              .+.+++++
T Consensus        29 ~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~  108 (412)
T d1bw0a_          29 PKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCS  108 (412)
T ss_dssp             CSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEES
T ss_pred             CCCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEec
Confidence            45789998887654     345777888765543  3468777778899999988752              23568899


Q ss_pred             ChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhccccccc
Q psy5413         124 SGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIH  201 (285)
Q Consensus       124 ~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~  201 (285)
                      |+++|+..++++++ .+||.|++++++|......   .      ...|.+++.++..+  ++..+++++++.+.+     
T Consensus       109 G~~~al~~~~~~l~-~~Gd~Vlv~~P~y~~~~~~---~------~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~-----  173 (412)
T d1bw0a_         109 GGSHGILMAITAIC-DAGDYALVPQPGFPHYETV---C------KAYGIGMHFYNCRPENDWEADLDEIRRLKDD-----  173 (412)
T ss_dssp             HHHHHHHHHHHHHC-CTTCEEEEEESCCTHHHHH---H------HHTTCEEEEEEEEGGGTTEECHHHHHHHCCT-----
T ss_pred             ccccchhhhhhhhh-ccccceeeeeccchhhhhh---h------hccCccccccccccccccchhhHHHHhhhhc-----
Confidence            99999999999987 5999999988876544332   2      34588888887643  456899999999887     


Q ss_pred             CCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh--------h-----cccC-C-eEEEeccc
Q psy5413         202 CASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE--------V-----CASV-D-TVMFCLSK  266 (285)
Q Consensus       202 ~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~--------~-----~~~~-d-v~~~s~sK  266 (285)
                        +++++++++|+||| |.+++.+++++|+++|++|+++||+||+|..+..        .     .+.. . +++.++||
T Consensus       174 --~~~~~~l~np~NPt-G~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK  250 (412)
T d1bw0a_         174 --KTKLLIVTNPSNPC-GSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAK  250 (412)
T ss_dssp             --TEEEEEEESSCTTT-CCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTT
T ss_pred             --cccccccccccccc-cccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCc
Confidence              89999999999999 9999999999999999999999999999872210        0     0111 2 33789999


Q ss_pred             ccCc--ceeEEeecCcc
Q psy5413         267 GLGA--PVGSILAGPEE  281 (285)
Q Consensus       267 ~l~~--p~gg~~~~~~~  281 (285)
                      .++.  .+.|+++..++
T Consensus       251 ~~~~~G~RvG~~~~~~~  267 (412)
T d1bw0a_         251 NLVVPGWRLGWLLYVDP  267 (412)
T ss_dssp             TTSCGGGCCEEEEEECT
T ss_pred             cCccCCCCcccccccch
Confidence            8765  77788776543

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.84  E-value=8.4e-21  Score=172.61  Aligned_cols=202  Identities=17%  Similarity=0.200  Sum_probs=147.4

Q ss_pred             CCeeeeeccCCcCCC-cHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCe
Q psy5413          65 NIRTVDIRSDTISKP-TMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSE  143 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~  143 (285)
                      +..++||.++.++.+ .+.+..++.   .++..|+.++...+|++.+++++|.+.++|++|||+|++++++++++ +|++
T Consensus        41 ~~~~id~~sd~~t~~~~~~~~a~~~---~gd~~y~~~~~~~~le~~~a~l~g~~~~~~~~sGt~A~~~a~~~~~~-~g~~  116 (465)
T d1ax4a_          41 SAVYIDLLTDSGTNAMSDHQWAAMI---TGDEAYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLK-YKQK  116 (465)
T ss_dssp             GGCSEECSCSSSCCCEEHHHHHHHH---TCCCCSSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHH-HHHH
T ss_pred             cCeeeecccccchhhhhHHHHHHHh---hhhhhhccChHHHHHHHHHHHHHCCCEEEECCCcHHHHHHHHHHHHH-HHHh
Confidence            456799999988765 333444432   46678998999999999999999999999999999999999999873 4443


Q ss_pred             EEe------cCCcceeeecccccccccccccccceeeeee----------ecCCCCCCCHHHHHHHhcccccccCCceEE
Q psy5413         144 IIV------GDCSHIMLWEQGGASQTSVYSQIGRVLMRGV----------TNQKDGTFDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       144 vi~------~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~----------~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                      ++.      ...+|..+...  ..      ...|...+.+          +....+.+|+++++++|++..   .+.+++
T Consensus       117 ~~~~~~~~i~~~~h~~t~~~--~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~---~~~~~~  185 (465)
T d1ax4a_         117 EGKAKNPVFISNFHFDTTAA--HV------ELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG---ADNIVA  185 (465)
T ss_dssp             TTCCSSCEEEESSCCHHHHH--HH------HHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC---GGGEEE
T ss_pred             cCCCCCeEEeccchhhhhHH--HH------HHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhc---cccccc
Confidence            222      22333222111  00      1112222221          122456799999999998642   226889


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC-----------------h----hhhcccCCeEEEeccc
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP-----------------L----AEVCASVDTVMFCLSK  266 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~-----------------~----~~~~~~~dv~~~s~sK  266 (285)
                      +++++++|..||.+++.++|++|+++|++||++||+||+|..                 .    .......|++++|.+|
T Consensus       186 ~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k  265 (465)
T d1ax4a_         186 IVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKK  265 (465)
T ss_dssp             EEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTS
T ss_pred             eeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeeccc
Confidence            999999999888999999999999999999999999999761                 0    0122347889999999


Q ss_pred             ccCcceeEEeecCcc
Q psy5413         267 GLGAPVGSILAGPEE  281 (285)
Q Consensus       267 ~l~~p~gg~~~~~~~  281 (285)
                      .+++|.+|+++.+++
T Consensus       266 ~~~~~~~g~l~~~~~  280 (465)
T d1ax4a_         266 DPLLNIGGLVAIRDN  280 (465)
T ss_dssp             TTCCSSCEEEEESSC
T ss_pred             CcccccceeEeecch
Confidence            999999988887653

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.84  E-value=4.4e-21  Score=172.26  Aligned_cols=200  Identities=14%  Similarity=0.104  Sum_probs=152.1

Q ss_pred             eeeeeccCCcCCCc-HHHHHHHHhcccC----CCCccCChhHHHHHHHHHhHc----C-----CCcEEEcCChHHHHHHH
Q psy5413          67 RTVDIRSDTISKPT-MEMKNYMFNCEVG----DDVYLEDPTCKELQEKAAKLA----G-----KEAAIFVPSGTMGNLIA  132 (285)
Q Consensus        67 ~~~~~~~~~~~~~~-~~v~~a~~~~~~~----~~~y~~~~~~~~l~~~la~~~----g-----~~~~~~~~~Gs~a~~~a  132 (285)
                      .+|+|+.+++..+. +.+++++.+.+..    ...|++..+..+||+.+++++    |     .+.+++++|+++|+..+
T Consensus        27 ~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~  106 (418)
T d2r5ea1          27 KPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYAT  106 (418)
T ss_dssp             CCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHH
T ss_pred             CCEEccCCCCCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhh
Confidence            56999999988754 5788988876653    235877777888999988875    3     23578889999999999


Q ss_pred             HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC----------CCCCHHHHHHHhcccccccC
Q psy5413         133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD----------GTFDLDEMEAKFSTADNIHC  202 (285)
Q Consensus       133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------~~~d~~~l~~~i~~~~~~~~  202 (285)
                      +.+++ .+|+.|++++++|........         ..|.+++.++..++          +..+++++.+....      
T Consensus       107 ~~~l~-~~gd~vlv~~P~y~~~~~~~~---------~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  170 (418)
T d2r5ea1         107 IQGHV-DEGDEVIIIEPFFDCYEPMVK---------AAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE------  170 (418)
T ss_dssp             HHHHC-CTTCEEEEEESCCTTHHHHHH---------HTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCT------
T ss_pred             hhhcc-ccccceeccccccchhhHHHH---------HcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhhc------
Confidence            99988 599999998887654433222         33666666654322          24678888888876      


Q ss_pred             CceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC----------hhhhcccC-C-eEEEecccccCc
Q psy5413         203 ASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP----------LAEVCASV-D-TVMFCLSKGLGA  270 (285)
Q Consensus       203 ~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~----------~~~~~~~~-d-v~~~s~sK~l~~  270 (285)
                       +++++++++|+||| |.+++.+++++|+++|++||+++|.||+|..          ...+.... . +++.|+||.++.
T Consensus       171 -~~~~~~i~~p~NPt-G~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~  248 (418)
T d2r5ea1         171 -KTKMIIINTPHNPL-GKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSL  248 (418)
T ss_dssp             -TEEEEEEESSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTC
T ss_pred             -cccceecCCcCccc-cccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccC
Confidence             89999999999999 9999999999999999999999999999861          11111111 2 448999998764


Q ss_pred             --ceeEEeecCccccc
Q psy5413         271 --PVGSILAGPEEFIQ  284 (285)
Q Consensus       271 --p~gg~~~~~~~~i~  284 (285)
                        .+.|++++++++++
T Consensus       249 pGlRiG~~~~~~~~i~  264 (418)
T d2r5ea1         249 TGWKIGWAYGPEALLK  264 (418)
T ss_dssp             GGGCCEEEESCHHHHH
T ss_pred             CCcccccccccchhhh
Confidence              78889998887654

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=5e-21  Score=170.13  Aligned_cols=200  Identities=17%  Similarity=0.109  Sum_probs=149.7

Q ss_pred             cCCeeeeeccCCcCCC-cHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc----C----CCcEEEcCChHHHHHHHHH
Q psy5413          64 VNIRTVDIRSDTISKP-TMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA----G----KEAAIFVPSGTMGNLIAIM  134 (285)
Q Consensus        64 ~~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~----g----~~~~~~~~~Gs~a~~~al~  134 (285)
                      .|..+++|+.+++..+ ++.+.+++.+...+...|+...+..+|++.+++++    |    .+.+++++|+++++..++.
T Consensus        26 ~g~~vi~l~~G~p~~~~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~  105 (389)
T d2gb3a1          26 RGVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFA  105 (389)
T ss_dssp             TTCEEEECSSCCCCSCCCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHH
T ss_pred             cCCCEEECCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEeccccccccccccc
Confidence            4788999999999875 44788999887666677887777889999999876    3    2346888888999999999


Q ss_pred             HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC-CCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413         135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD-GTFDLDEMEAKFSTADNIHCASTSLVCVENT  213 (285)
Q Consensus       135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~  213 (285)
                      +++ .+|+.|++.++++.......         ...|...+.++..++ +..+.+.+...+.+       +++++++++|
T Consensus       106 ~l~-~~gd~V~i~~P~y~~~~~~~---------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~nP  168 (389)
T d2gb3a1         106 VIA-NPGDEILVLEPFYANYNAFA---------KIAGVKLIPVTRRMEEGFAIPQNLESFINE-------RTKGIVLSNP  168 (389)
T ss_dssp             HHC-CTTCEEEEEESCCTHHHHHH---------HHHTCEEEEEECCGGGTSCCCTTGGGGCCT-------TEEEEEEESS
T ss_pred             ccc-cCCCeEEEeCCCCccccccc---------cccCccccccccccccccchhhhhhhhccc-------CccEEEeCCC
Confidence            887 68999999887765443322         233667777765433 22344445555555       8999999999


Q ss_pred             cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---------hhhcccCCeEEEecccccCc--ceeEEeecCcc
Q psy5413         214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---------AEVCASVDTVMFCLSKGLGA--PVGSILAGPEE  281 (285)
Q Consensus       214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---------~~~~~~~dv~~~s~sK~l~~--p~gg~~~~~~~  281 (285)
                      +||| |.+++.+++++|+++|++||+++|.||+|..+         ........+++.|++|.++.  .+.|+++++++
T Consensus       169 ~NPt-G~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~  246 (389)
T d2gb3a1         169 CNPT-GVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNE  246 (389)
T ss_dssp             CTTT-CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCH
T ss_pred             Cccc-cccchHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccccCcccceeeeeccch
Confidence            9999 99999999999999999999999999998711         11112223558899998766  66777777554

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=3.4e-21  Score=173.30  Aligned_cols=236  Identities=13%  Similarity=0.111  Sum_probs=151.1

Q ss_pred             CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC--CC--CccCChh
Q psy5413          27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG--DD--VYLEDPT  102 (285)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~--~~--~y~~~~~  102 (285)
                      |..+.++.+.+.|+..++.+++....|+..                  +.++.+|+|.+|+.+++..  +.  ....++.
T Consensus        23 P~~~~~~~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~   84 (425)
T d1sffa_          23 PIFADRAENCRVWDVEGREYLDFAGGIAVL------------------NTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEP   84 (425)
T ss_dssp             EEEEEEEEBTEEEETTCCEEEESSHHHHTC------------------TTCBTCHHHHHHHHHHTTTCSCCCTTTEECHH
T ss_pred             CceEEEEecCEEEeCCCCEEEEcCcCHHhh------------------cccCCcHHHHHHHHHHHhhcCCcccccccCcH
Confidence            556677888888876555544444433332                  3477999999999988764  21  1124566


Q ss_pred             HHHHHHHHHhHcC---CCcEEEcCChHHHHHHHHHHccccCCCe-EEe-cCCcceeeeccccccccccccc----c--cc
Q psy5413         103 CKELQEKAAKLAG---KEAAIFVPSGTMGNLIAIMTHCDRRDSE-IIV-GDCSHIMLWEQGGASQTSVYSQ----I--GR  171 (285)
Q Consensus       103 ~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi~-~~~~h~~~~~~~~~~~~~~~~~----~--~g  171 (285)
                      ..++.+.+.+.+.   .+.++|++|||+|++.|++++...+++. ++. ...||+.+.....+.....+..    .  ..
T Consensus        85 ~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~  164 (425)
T d1sffa_          85 YLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGH  164 (425)
T ss_dssp             HHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSS
T ss_pred             HHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCC
Confidence            8889999999974   3457999999999999999998666654 443 5778887754333321110000    0  01


Q ss_pred             eeeeeeecCCCCCC--C-HHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413         172 VLMRGVTNQKDGTF--D-LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL  248 (285)
Q Consensus       172 ~~~~~~~~~~~~~~--d-~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~  248 (285)
                      ......+.......  . ....++.+..  ..+..++++|++|+.++..|....|+++|++|+++|++||+++|+||+++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~t  242 (425)
T d1sffa_         165 VYRALYPCPLHGISEDDAIASIHRIFKN--DAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS  242 (425)
T ss_dssp             EEEECCCBGGGTBCHHHHHHHHHHHHHH--TCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred             ccccCCccccccccchhhHHHHHHHHHh--cccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccc
Confidence            11111111111111  1 1111121111  11334799999999998886678899999999999999999999999988


Q ss_pred             Ch-----hhhcccCCeE--EEecccccCc--ceeEEeecCcccc
Q psy5413         249 PL-----AEVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFI  283 (285)
Q Consensus       249 ~~-----~~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i  283 (285)
                      ++     ....+.+++.  +.+++|.+++  |+++++.. ++++
T Consensus       243 G~gR~g~~~a~~~~gv~PDi~~~gK~l~gG~P~~av~~~-~~i~  285 (425)
T d1sffa_         243 GAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGR-AEVM  285 (425)
T ss_dssp             TTTTTSSSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEE-HHHH
T ss_pred             cCCCcchhhHHHhcCCCccceecccccCCCcceEEEEEc-HHHH
Confidence            43     3334555555  7778899987  87876654 4444

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.3e-20  Score=165.79  Aligned_cols=192  Identities=13%  Similarity=0.074  Sum_probs=142.7

Q ss_pred             eeeccCCcCCCc-HHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----CC----CcEEEcCChHHHHHHHHHHccc
Q psy5413          69 VDIRSDTISKPT-MEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----GK----EAAIFVPSGTMGNLIAIMTHCD  138 (285)
Q Consensus        69 ~~~~~~~~~~~~-~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g~----~~~~~~~~Gs~a~~~al~~~~~  138 (285)
                      |+|..+.++.+. |.+.+++.+.+.. ...|..... .++++.+++++    |.    +.+++++|+++++..++.+++ 
T Consensus         2 ~~~~~~~~df~~p~~i~eal~~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~-   79 (361)
T d1d2fa_           2 LPFTISDMDFATAPCIIEALNQRLMHGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS-   79 (361)
T ss_dssp             EECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS-
T ss_pred             cCcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhcc-
Confidence            667777777755 6899998876653 345765554 56888888764    43    457999999999999999987 


Q ss_pred             cCCCeEEecCCcceeeecccccccccccccccceeeeeeecC---CCCCCCHHHHHHHhcccccccCCceEEEEEecccC
Q psy5413         139 RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ---KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHN  215 (285)
Q Consensus       139 ~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n  215 (285)
                      ++||+|++++++|........         ..|..++.++..   +++.+|++.+++.+.+.      ++++|++++|+|
T Consensus        80 ~~gd~Vlv~~P~y~~~~~~~~---------~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~------~~~~i~l~~p~N  144 (361)
T d1d2fa_          80 ETGEGVVIHTPAYDAFYKAIE---------GNQRTVMPVALEKQADGWFCDMGKLEAVLAKP------ECKIMLLCSPQN  144 (361)
T ss_dssp             CTTCEEEEEESCCHHHHHHHH---------HTTCEEEEEECEECSSSEECCHHHHHHHHTST------TEEEEEEESSCT
T ss_pred             ccccccccccccccchhHHHH---------hhcceEEeecccccccccccccccchhhcccC------CceeEEeccccc
Confidence            699999998888754433222         336666666542   33458999999998653      789999999999


Q ss_pred             CCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------h-h-cccCC-eEEEecccccC--cceeEEeec
Q psy5413         216 YCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------E-V-CASVD-TVMFCLSKGLG--APVGSILAG  278 (285)
Q Consensus       216 ~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~-~-~~~~d-v~~~s~sK~l~--~p~gg~~~~  278 (285)
                      || |.+++.+++++|+++|+++|+++|+||+|..+.       . . ...-+ +++.++||.++  |.++|++..
T Consensus       145 PT-G~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~  218 (361)
T d1d2fa_         145 PT-GKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGII  218 (361)
T ss_dssp             TT-CCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEE
T ss_pred             cc-ccccchhhhhhhhhhhhhhheeeeecccccccccccccccccccccccccccccccccccccccccceeeec
Confidence            99 999999999999999999999999999987221       1 1 11223 45899999765  467777654

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.84  E-value=2.9e-20  Score=163.91  Aligned_cols=168  Identities=19%  Similarity=0.260  Sum_probs=140.8

Q ss_pred             CCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-cccccccccccc
Q psy5413          94 DDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIG  170 (285)
Q Consensus        94 ~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~  170 (285)
                      ...|+  .+|....||+.++++.|.+.++.++||..|+..++..++ ++||+|++++..|+.+.... ...      ..+
T Consensus        54 ~~~Y~R~~nPT~~~LE~~la~LEgg~~a~~~sSGmaAi~~~l~~ll-~~Gd~vi~~~~~Yg~t~~~~~~~l------~~~  126 (397)
T d1y4ia1          54 GYIYTRLGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLC-QQGDHIVSASAIYGCTHAFLSHSM------PKF  126 (397)
T ss_dssp             SSCCCTTSCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESSSCHHHHHHHHTHH------HHT
T ss_pred             CceeeCCCCHHHHHHHHHHHHHhCCccceeehHHHHHHHHHHhhcc-CCCCeeeeecccccccchhhhccc------CCC
Confidence            34554  679999999999999999999999999999999998877 69999999877765554322 111      356


Q ss_pred             ceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh
Q psy5413         171 RVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL  250 (285)
Q Consensus       171 g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~  250 (285)
                      |+++..+...     |++.++++|++       +|++|++|.|.||+ ..+.|   |++|+++|+++|+++++|...+++
T Consensus       127 Gi~~~~vd~~-----d~~~~~~~i~~-------~Tklv~~Esp~NP~-l~v~D---i~~i~~iA~~~gi~~vvDnT~atP  190 (397)
T d1y4ia1         127 GINVRFVDAG-----KPEEIRAAMRP-------ETKVVYIETPANPT-LSLVD---IETVAGIAHQQGALLVVDNTFMSP  190 (397)
T ss_dssp             TCEEEEECTT-----SHHHHHHHCCT-------TEEEEEEESSCTTT-CCCCC---HHHHHHHHHHTTCEEEEECTTTCT
T ss_pred             ceEeeccCCC-----CHHHHHHhcCC-------CCcEEEecCCcccc-eeecc---cHHHHHHhhcCCceEEecCcccCc
Confidence            8888777642     88999999987       89999999999999 99999   999999999999999999998832


Q ss_pred             ---hhhcccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413         251 ---AEVCASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ  284 (285)
Q Consensus       251 ---~~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~  284 (285)
                         ..+..++|+++.|++|+++|   .+||+++++++.++
T Consensus       191 ~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~  230 (397)
T d1y4ia1         191 YCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFID  230 (397)
T ss_dssp             TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHH
T ss_pred             ccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHH
Confidence               34556899999999999999   78888988876553

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.84  E-value=6e-21  Score=170.58  Aligned_cols=229  Identities=14%  Similarity=0.085  Sum_probs=146.4

Q ss_pred             CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC---CccCChh
Q psy5413          26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD---VYLEDPT  102 (285)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~---~y~~~~~  102 (285)
                      .|..+.++.+.+.|+..++.+++.+..++..                  +.++.||+|.+|+.+++....   .......
T Consensus        21 ~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~   82 (404)
T d1z7da1          21 IPVVLKRAKGVFVYDVNDKRYYDFLSAYSSV------------------NQGHCHPNILNAMINQAKNLTICSRAFFSVP   82 (404)
T ss_dssp             EEEEEEEEEBTEEEETTCCEEEESSHHHHTT------------------TTCBTCHHHHHHHHHHHTTCSCCCTTSEEHH
T ss_pred             CCceEEEeecCEEEECCCCEEEEccccHHHH------------------hhhcCcHHHHHHHHHHHHhCCCcccccchHH
Confidence            3667778888888886655555544444432                  337789999999998776421   1112345


Q ss_pred             HHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCC--------C-eEE-ecCCcceeeecccccccccccccccce
Q psy5413         103 CKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRD--------S-EII-VGDCSHIMLWEQGGASQTSVYSQIGRV  172 (285)
Q Consensus       103 ~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g--------~-~vi-~~~~~h~~~~~~~~~~~~~~~~~~~g~  172 (285)
                      ..++++.++++.+.+.+.|+++||+|++.+++++.+..+        . .++ ....+|+.+...........+....+.
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~  162 (404)
T d1z7da1          83 LGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGP  162 (404)
T ss_dssp             HHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC-----------------------
T ss_pred             HHHHHHhhhhccccceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCC
Confidence            778888899999999999999999999999998753211        1 222 245666555432222211111111111


Q ss_pred             ---eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC
Q psy5413         173 ---LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP  249 (285)
Q Consensus       173 ---~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~  249 (285)
                         .+..+|.     .+.+.++..+.+      +++++|++|+.++.+|....|++++++|+++|++||+++|+||++++
T Consensus       163 ~~~~~~~~~~-----~~~~~l~~~~~~------~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tG  231 (404)
T d1z7da1         163 FAPQFSKVPY-----DDLEALEEELKD------PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTG  231 (404)
T ss_dssp             ---CEEEECT-----TCHHHHHHHHTS------TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred             CCcccccccc-----chHHHHHHHhcC------CCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccC
Confidence               1112222     267888877754      27999999999998866778899999999999999999999999884


Q ss_pred             h-----hhhcccCCeE--EEecccccCc---ceeEEeecCccccc
Q psy5413         250 L-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFIQ  284 (285)
Q Consensus       250 ~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i~  284 (285)
                      +     ....+..++.  +.+++|++++   |.+ +++.++++++
T Consensus       232 fgRtG~~~~~e~~gv~PDivt~gK~l~gG~~p~~-~v~~~~~i~~  275 (404)
T d1z7da1         232 LGRTGKLLCVHHYNVKPDVILLGKALSGGHYPIS-AVLANDDIML  275 (404)
T ss_dssp             TTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCE-EEEECHHHHT
T ss_pred             CCcccccccccccCCCCCEEEEcccccCCCCCcc-cccchHHHHc
Confidence            3     2334555555  6688899976   555 4556566543

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=2e-20  Score=164.87  Aligned_cols=165  Identities=21%  Similarity=0.235  Sum_probs=137.1

Q ss_pred             Ccc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccce
Q psy5413          96 VYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRV  172 (285)
Q Consensus        96 ~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~  172 (285)
                      .|+  .+|....||+.|+++.|.+.++.++||..|+..++.+++ ++||+|++++..|+.+.... ...      ..+|+
T Consensus        52 ~Y~R~~nPT~~~LE~~la~LEg~~~a~~~~SGmaAi~~~l~~l~-~~Gd~vl~~~~~Yg~t~~l~~~~~------~~~Gi  124 (392)
T d1gc0a_          52 FYSRISNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLL-RPGDEVLLGNTLYGCTFAFLHHGI------GEFGV  124 (392)
T ss_dssp             -----CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCSHHHHHHHHTG------GGGTC
T ss_pred             eecCCCChHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHhhc-cCCCeeecccccchhhhhhhhhhh------ccCCc
Confidence            454  679999999999999999999999999999999999877 69999998776655443321 111      35688


Q ss_pred             eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh--
Q psy5413         173 LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL--  250 (285)
Q Consensus       173 ~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~--  250 (285)
                      ++..++.     .|+++++++|++       +|++|++|.|.||+ ..+.|   |++|+++||++|+++++|..+++.  
T Consensus       125 ~~~~~d~-----~d~~~~~~ai~~-------~t~lv~~Esp~NP~-l~v~D---i~~i~~ia~~~g~~~vvDnT~atP~~  188 (392)
T d1gc0a_         125 KLRHVDM-----ADLQALEAAMTP-------ATRVIYFESPANPN-MHMAD---IAGVAKIARKHGATVVVDNTYCTPYL  188 (392)
T ss_dssp             EEEEECT-----TCHHHHHHHCCT-------TEEEEEEESSCTTT-CCCCC---HHHHHHHHGGGTCEEEEECTTTHHHH
T ss_pred             ccccCCc-----cCHHHHHHhCCC-------CCeEEEecccccce-eeecc---hHHHHHHHHhcCCEEEEecCccCccc
Confidence            7777654     389999999988       89999999999999 99999   999999999999999999998832  


Q ss_pred             -hhhcccCCeEEEecccccCc---ceeEEeecCcccc
Q psy5413         251 -AEVCASVDTVMFCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       251 -~~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                       ..+..++|+++.|.+|+++|   .++|+++++++++
T Consensus       189 ~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~  225 (392)
T d1gc0a_         189 QRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALV  225 (392)
T ss_dssp             CCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHH
T ss_pred             cChHHhCCCEEEEecceeecCCcccccccccchhHHH
Confidence             24556899999999999998   7888888887655

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=1.1e-19  Score=156.51  Aligned_cols=173  Identities=17%  Similarity=0.271  Sum_probs=133.8

Q ss_pred             eeeeeccCCcCCCcHHHHHHHHhcccCC-CCccCChhHHHHHHHHHhHcCCCcE-EEcCChHHHHHHHHHHccccCCCeE
Q psy5413          67 RTVDIRSDTISKPTMEMKNYMFNCEVGD-DVYLEDPTCKELQEKAAKLAGKEAA-IFVPSGTMGNLIAIMTHCDRRDSEI  144 (285)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~-~~y~~~~~~~~l~~~la~~~g~~~~-~~~~~Gs~a~~~al~~~~~~~g~~v  144 (285)
                      +.++|+|+|+++.||+|++||.++..++ ..|+.++...++|+.+++++|.+.. +|++||++||+.++..++ +.++.+
T Consensus         3 ~~~~f~s~n~~g~~P~v~~A~~~a~~~~~~~~~~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~~-~~~~~~   81 (345)
T d1v72a1           3 PALGFSSDNIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMT-PPWGNI   81 (345)
T ss_dssp             CCCBCSCGGGCCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSC-CTTEEE
T ss_pred             CCcCcCCCCCCCCCHHHHHHHHHHhccCccccCCCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHHH-hcCCcc
Confidence            4589999999999999999999876654 6788899999999999999999865 788999999999999987 577777


Q ss_pred             EecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec-ccCCCCeeeCC
Q psy5413         145 IVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN-THNYCGGTVLP  223 (285)
Q Consensus       145 i~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~-~~n~~gG~~~~  223 (285)
                      ++....|.+........      ...+..+..++...++..+++.+++.+.+..... ..+..++++. +.+.. +...+
T Consensus        82 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~  153 (345)
T d1v72a1          82 YCHPASHINNDECGAPE------FFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDV-HTTQPACVSITQATEV-GSIYT  153 (345)
T ss_dssp             EECTTSHHHHSSTTHHH------HHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCT-TSCEEEEEEEESSCTT-SCCCC
T ss_pred             ccccccceeeechhhHH------HhcCcccccccccccccccHHHhhhhhccccccc-ccccceeeeeeccccc-ccccc
Confidence            77777666554433333      2335555666555677789999999997642221 1334444444 44444 88889


Q ss_pred             HHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413         224 MQWLRELKARCQEHNIPVHMDGARL  248 (285)
Q Consensus       224 ~~~l~~i~~la~~~gi~li~Dea~~  248 (285)
                      .++++++.++|++||+++++|+++.
T Consensus       154 ~~~~~~i~~~~~~~~~~~~~D~~~~  178 (345)
T d1v72a1         154 LDEIEAIGDVCKSSSLGLHMDGSRF  178 (345)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEETTH
T ss_pred             chhhhhHHHHHHhcCceeeeccccc
Confidence            9999999999999999999999987

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.82  E-value=5.1e-20  Score=164.26  Aligned_cols=208  Identities=13%  Similarity=0.055  Sum_probs=146.3

Q ss_pred             CCeeeeeccCCcCC---CcHHHHHHHHhcccC----CCCccCChhHHHHHHHHHhHc--------CCCcEEEcCChHHHH
Q psy5413          65 NIRTVDIRSDTISK---PTMEMKNYMFNCEVG----DDVYLEDPTCKELQEKAAKLA--------GKEAAIFVPSGTMGN  129 (285)
Q Consensus        65 ~~~~~~~~~~~~~~---~~~~v~~a~~~~~~~----~~~y~~~~~~~~l~~~la~~~--------g~~~~~~~~~Gs~a~  129 (285)
                      ++.+++|+.+.|..   +.+.+.+++.+....    ...|+...+..+||+.+++++        ..+.+++++|+++++
T Consensus        28 ~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al  107 (403)
T d1wsta1          28 TSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQAL  107 (403)
T ss_dssp             SSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHH
T ss_pred             CCCcEECCCCCCCccccCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHH
Confidence            34678998887654   455666666665432    235887788899999999985        235578999999999


Q ss_pred             HHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413         130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVC  209 (285)
Q Consensus       130 ~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~  209 (285)
                      ..++.+++ ++|+.|++++++|.......         ...|.+++.++.++++ .+...+..............+.+++
T Consensus       108 ~~~~~~l~-~~gd~v~~~~P~y~~~~~~~---------~~~g~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  176 (403)
T d1wsta1         108 DLIGRVFL-NPGDPIVVEAPTYLAAIQAF---------KYYDPEFISIPLDDKG-MRVDLLEEKLEELRKQGKRVKIVYT  176 (403)
T ss_dssp             HHHHHHHC-CTTCEEEEEESCCHHHHHHH---------HTTCCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred             HHHHHHHh-hcCCccccCCCcchhhhHHH---------hhccccceeEeecccC-Cccccccccchhhhhcccccccccc
Confidence            99999987 68999999888765443322         2448888888874433 2223222221111111223667888


Q ss_pred             EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---------hhhcccC--CeEEEecccccCc-ceeEEee
Q psy5413         210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---------AEVCASV--DTVMFCLSKGLGA-PVGSILA  277 (285)
Q Consensus       210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---------~~~~~~~--dv~~~s~sK~l~~-p~gg~~~  277 (285)
                      +.+|+||| |.+++.+++++|+++|++||++||+||+|..+         .......  .+++.|+||+++. .+.|+++
T Consensus       177 ~~~p~NPt-G~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~RiG~~i  255 (403)
T d1wsta1         177 VSTFQNPA-GVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILAPGFRIGWVA  255 (403)
T ss_dssp             CCSSCTTT-CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTCGGGCCEEEE
T ss_pred             ccccCCCC-CccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEccccceecCcccccccc
Confidence            88899999 99999999999999999999999999998721         1111222  2448999998864 7888888


Q ss_pred             cCccccc
Q psy5413         278 GPEEFIQ  284 (285)
Q Consensus       278 ~~~~~i~  284 (285)
                      +++++++
T Consensus       256 ~~~~~i~  262 (403)
T d1wsta1         256 AHPHLIR  262 (403)
T ss_dssp             ECHHHHH
T ss_pred             cchHHHH
Confidence            8887654

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.2e-20  Score=165.19  Aligned_cols=202  Identities=16%  Similarity=0.132  Sum_probs=150.9

Q ss_pred             CCeeeeeccCCcCCC-cHHHHHHHHhcccCC---CCccCChhHHHHHHHHHhHc----CCC-----cEEEcCChHHHHHH
Q psy5413          65 NIRTVDIRSDTISKP-TMEMKNYMFNCEVGD---DVYLEDPTCKELQEKAAKLA----GKE-----AAIFVPSGTMGNLI  131 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~~---~~y~~~~~~~~l~~~la~~~----g~~-----~~~~~~~Gs~a~~~  131 (285)
                      ++.+|+|+.+.|..+ ++.+++++.+.+.+.   ..|++..+..+|++.+++++    |.+     .+++++|+++|+..
T Consensus        24 ~~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~  103 (418)
T d1w7la_          24 EHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFT  103 (418)
T ss_dssp             TSCCEECCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHH
T ss_pred             CCCCEECCCCCCCCCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHH
Confidence            457899999998875 457888888776642   35777777888999998885    432     36788888999999


Q ss_pred             HHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC------------CCCCCCHHHHHHHhccccc
Q psy5413         132 AIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ------------KDGTFDLDEMEAKFSTADN  199 (285)
Q Consensus       132 al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------------~~~~~d~~~l~~~i~~~~~  199 (285)
                      ++.+++ .+|+.|+++++++........         ..|.+.+.++..            .++.+|.+++...+.+   
T Consensus       104 ~~~~l~-~~g~~vlv~~p~~~~y~~~~~---------~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---  170 (418)
T d1w7la_         104 AFQALV-DEGDEVIIIEPFFDCYEPMTM---------MAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS---  170 (418)
T ss_dssp             HHHHHC-CTTCEEEEEESCCTTHHHHHH---------HTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCT---
T ss_pred             HHHhhc-cCCceeeccccccchhHHHHH---------HcCCEeeccccccccccccccccccCcccchhhhhccccc---
Confidence            999988 589999988776544332222         235555544421            2334678888887776   


Q ss_pred             ccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC----------hhhhcccCC--eEEEecccc
Q psy5413         200 IHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP----------LAEVCASVD--TVMFCLSKG  267 (285)
Q Consensus       200 ~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~----------~~~~~~~~d--v~~~s~sK~  267 (285)
                          ++++|++++|+||| |.+++.+++++|+++|++|++++|.||+|..          +..+.+..|  +++.|+||.
T Consensus       171 ----~~~~i~~~~p~NPt-G~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~  245 (418)
T d1w7la_         171 ----RTKALVLNTPNNPL-GKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKT  245 (418)
T ss_dssp             ----TEEEEEEESSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHH
T ss_pred             ----cccceeccCcCCcc-cccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCcc
Confidence                89999999999999 9999999999999999999999999999862          122222223  449999998


Q ss_pred             cCc--ceeEEeecCccccc
Q psy5413         268 LGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       268 l~~--p~gg~~~~~~~~i~  284 (285)
                      ++.  .+.|++++++++++
T Consensus       246 ~~~pG~RvG~~v~~~~~~~  264 (418)
T d1w7la_         246 FSATGWKVGWVLGPDHIMK  264 (418)
T ss_dssp             TTCGGGCCEEEECCHHHHH
T ss_pred             ccCCCCcccccccchhhhh
Confidence            664  67888888877653

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.81  E-value=1.9e-19  Score=161.93  Aligned_cols=203  Identities=14%  Similarity=0.107  Sum_probs=145.4

Q ss_pred             eeeeeccCCcCCCcHHHHHHHHhcccCC------------CCccCChhHHHHHHHHHhHcC----------CCcEEEcCC
Q psy5413          67 RTVDIRSDTISKPTMEMKNYMFNCEVGD------------DVYLEDPTCKELQEKAAKLAG----------KEAAIFVPS  124 (285)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~------------~~y~~~~~~~~l~~~la~~~g----------~~~~~~~~~  124 (285)
                      .+|+|........+..+.+.+.+.....            ..|.+..+..+||+.++++++          .+.+++++|
T Consensus        37 G~i~l~~aen~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G  116 (428)
T d1iaya_          37 GVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGG  116 (428)
T ss_dssp             SBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEH
T ss_pred             ceEEeecccCccchHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCC
Confidence            3677776655556667776665533210            146655567889999998752          235688888


Q ss_pred             hHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccC
Q psy5413         125 GTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHC  202 (285)
Q Consensus       125 Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~  202 (285)
                      +++++..++.+++ .+||.|+++.++|........        ...|++++.++..+  ++.+|+++++.+++. .....
T Consensus       117 ~~~al~~~~~~l~-~~Gd~Vlv~~P~y~~~~~~~~--------~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~-~~~~~  186 (428)
T d1iaya_         117 ATGANETIIFCLA-DPGDAFLVPSPYYPAFNRDLR--------WRTGVQLIPIHCESSNNFKITSKAVKEAYEN-AQKSN  186 (428)
T ss_dssp             HHHHHHHHHHHHC-CTTCEEEEESSCCTTHHHHTT--------TTTCCEEEEECCCTTTTTCCCHHHHHHHHHH-HHHTT
T ss_pred             HHHHHHHHHHHhC-CCCCEEEEccCCchHHHHHHH--------HhcCCeEEEeecccccccccccccccchhhh-hhccC
Confidence            9999999999987 699999999888754433221        12377888887643  457899988877643 22234


Q ss_pred             CceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhc-------ccCC--eEEEe
Q psy5413         203 ASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVC-------ASVD--TVMFC  263 (285)
Q Consensus       203 ~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~-------~~~d--v~~~s  263 (285)
                      .++++|++++|+||| |.+++.+++++|+++|++||++||+||+|..+          ..+.       ...|  +++.|
T Consensus       187 ~~~~~~~l~nP~NPt-G~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s  265 (428)
T d1iaya_         187 IKVKGLILTNPSNPL-GTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYS  265 (428)
T ss_dssp             CCEEEEEEESSCTTT-CCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEE
T ss_pred             CCceEEEEccCCCcc-cccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEec
Confidence            578999999999999 99999999999999999999999999998721          1111       1112  45899


Q ss_pred             cccccCc--ceeEEeecCc
Q psy5413         264 LSKGLGA--PVGSILAGPE  280 (285)
Q Consensus       264 ~sK~l~~--p~gg~~~~~~  280 (285)
                      +||.++.  .+.|++++.+
T Consensus       266 ~SK~~~~~GlRiG~~~~~~  284 (428)
T d1iaya_         266 LSKDMGLPGFRVGIIYSFN  284 (428)
T ss_dssp             STTTSSCGGGCEEEEEESC
T ss_pred             CCCcccCCCcccccccccc
Confidence            9998754  6777777643

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.81  E-value=1.1e-19  Score=159.45  Aligned_cols=194  Identities=13%  Similarity=0.082  Sum_probs=131.7

Q ss_pred             eeeeeccC-CcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCCCe
Q psy5413          67 RTVDIRSD-TISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRDSE  143 (285)
Q Consensus        67 ~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g~~  143 (285)
                      .++||+.+ ++.++++.+++++.+.......| +++...+|++.++++++.+.  +++++++++++..++.+ . .+++.
T Consensus        23 ~~idls~~~np~~~p~~~~~a~~~~~~~~~~Y-p~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~-~-~~~~~   99 (355)
T d1lc5a_          23 QLLDFSANINPLGMPVSVKRALIDNLDCIERY-PDADYFHLHQALARHHQVPASWILAGNGETESIFTVASG-L-KPRRA   99 (355)
T ss_dssp             GSEECSSCCCTTCCCHHHHHHHHHTGGGGGSC-CCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHH-H-CCSEE
T ss_pred             heEEccCCCCCCCCCHHHHHHHHHHHHHhccC-CCCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHhh-h-ccccc
Confidence            57999976 77778889999998876554556 45556799999999998765  45555555655555444 3 23333


Q ss_pred             EEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeee
Q psy5413         144 IIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTV  221 (285)
Q Consensus       144 vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~  221 (285)
                      ++..+.+ .........         .+..+..++..  +++..+ +++++++.+       ++++|++++|+||| |.+
T Consensus       100 ~v~~p~~-~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~-~~~~~~~~~-------~~~~v~l~nP~NPt-G~~  160 (355)
T d1lc5a_         100 MIVTPGF-AEYGRALAQ---------SGCEIRRWSLREADGWQLT-DAILEALTP-------DLDCLFLCTPNNPT-GLL  160 (355)
T ss_dssp             EEEESCC-THHHHHHHH---------TTCEEEEEECCGGGTTCCC-TTHHHHCCT-------TCCEEEEESSCTTT-CCC
T ss_pred             cccCCcc-ceecccccc---------ccccceeeeeeccCCccce-eeeeecccc-------ccceeeeecccCcc-ccc
Confidence            3333332 222111112         24455555542  334344 556667766       89999999999999 999


Q ss_pred             CCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhcccC-C-eEEEecccccCc--ceeEEeecCccc
Q psy5413         222 LPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVCASV-D-TVMFCLSKGLGA--PVGSILAGPEEF  282 (285)
Q Consensus       222 ~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~~~~-d-v~~~s~sK~l~~--p~gg~~~~~~~~  282 (285)
                      ++.+++++|+++|++|++++|+||+|..+.       ...... . +++.|+||+++.  .+.|+++++++.
T Consensus       161 ~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~  232 (355)
T d1lc5a_         161 PERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDA  232 (355)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHH
T ss_pred             chhhhhhhhhhhccccccccccccceeeeeeecccccccccccccceeecccccccccccccccceeccchh
Confidence            999999999999999999999999987221       111222 2 459999998764  677888876543

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.3e-19  Score=160.33  Aligned_cols=202  Identities=18%  Similarity=0.184  Sum_probs=152.5

Q ss_pred             CeeeeeccCCcCCCcHHHHHHHHhcccC---CC---Ccc----CChhHHHHHHHHHhHcCCC---cEEEcCChHHHHHHH
Q psy5413          66 IRTVDIRSDTISKPTMEMKNYMFNCEVG---DD---VYL----EDPTCKELQEKAAKLAGKE---AAIFVPSGTMGNLIA  132 (285)
Q Consensus        66 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~---~~---~y~----~~~~~~~l~~~la~~~g~~---~~~~~~~Gs~a~~~a  132 (285)
                      +.++.|.+...+..++.+.+++.+....   ..   .+.    .....++.|+.+++++|..   .++|+.|+|+++..+
T Consensus        21 ~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~  100 (405)
T d1jf9a_          21 LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLV  100 (405)
T ss_dssp             EECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHH
T ss_pred             CCeEEEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHH
Confidence            4556777766666788999998765432   11   111    1134778899999999843   468999999999887


Q ss_pred             HHH---ccccCCCeEEecCCcceeeec-ccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEE
Q psy5413         133 IMT---HCDRRDSEIIVGDCSHIMLWE-QGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLV  208 (285)
Q Consensus       133 l~~---~~~~~g~~vi~~~~~h~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v  208 (285)
                      +..   ....+|++|++.+..|.+... +..++      +..|.+++.+|.++++.+|++.+++++++       +|++|
T Consensus       101 ~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a------~~~g~~v~~~~~~~~g~~~~~~~~~~i~~-------~t~lv  167 (405)
T d1jf9a_         101 ANSWGNSNVRAGDNIIISQMEHHANIVPWQMLC------ARVGAELRVIPLNPDGTLQLETLPTLFDE-------KTRLL  167 (405)
T ss_dssp             HHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHH------HHHTCEEEEECBCTTSCBCGGGHHHHCCT-------TEEEE
T ss_pred             HhcccccccCCCCEEEEEeCcccchHHHHHHHH------HHcCcEEEEECCCCCCcCCHHHHHHhccC-------CcEEE
Confidence            765   233578999987776654322 11222      45689999999888899999999999988       89999


Q ss_pred             EEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         209 CVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       209 ~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      .++.++|.+ |.+.|   +++|+++||++|+++++|.+|+ +   +.....++|+++++++||+|.+-.|++..++++++
T Consensus       168 ~~~~v~~~t-G~~~p---i~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~~Gp~G~g~l~v~~~~~~  243 (405)
T d1jf9a_         168 AITHVSNVL-GTENP---LAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQ  243 (405)
T ss_dssp             EEESBCTTT-CCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCSSCEEEEECHHHHT
T ss_pred             EEecCCCcc-cccCc---hHHhhhHHHHcCCeeecccceeccccccchhhcCCceeeccccccccCCCceeeeechhhhc
Confidence            999999999 99999   9999999999999999999988 3   22234689999999999976443466666666543

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.81  E-value=1.9e-19  Score=163.56  Aligned_cols=243  Identities=15%  Similarity=0.148  Sum_probs=167.3

Q ss_pred             cchhhhhhcccCCCCCccccccccccccc----------cCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcH
Q psy5413          12 HRQTKIAREVLTLPTPALVESTPLSRSWS----------DNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTM   81 (285)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (285)
                      |.++...+++.+-..|...+.......+.          .......+.+.+|.+|.+......            ....+
T Consensus        20 ~~~~~~~~~v~~~~~p~~l~~~~~~~~P~~g~~~~~~l~~~~~~i~~~~~~~~~P~f~~~~~~------------~~~~~   87 (476)
T d1js3a_          20 YLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYFPT------------ASSYP   87 (476)
T ss_dssp             HHHTGGGSCSSCCCCTTCSGGGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSSCC------------CCCHH
T ss_pred             HHHhhccCCCCCCCChHHHHHhcCcccCcCCCCHHHHHHHHHHHHhCCCCCCCCCCeeEeCCC------------CCCHH
Confidence            45555566666544455444332222221          122334567788888865555433            33455


Q ss_pred             HHHHHHHhcccC--CCCccCChhHHHHHHHHHhH----cCCCc-----------EEEcCChHHHHHHHHHHccccC----
Q psy5413          82 EMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKL----AGKEA-----------AIFVPSGTMGNLIAIMTHCDRR----  140 (285)
Q Consensus        82 ~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~----~g~~~-----------~~~~~~Gs~a~~~al~~~~~~~----  140 (285)
                      .++..+.....+  ...+...|...++|+.+.++    +|.+.           .+++++||+|+..++.++..+.    
T Consensus        88 ~~l~~~~~~~~n~n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~  167 (476)
T d1js3a_          88 AMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRL  167 (476)
T ss_dssp             HHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhh
Confidence            666666544444  34556778888888776555    56532           4899999999999998876321    


Q ss_pred             -----C---------CeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceE
Q psy5413         141 -----D---------SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       141 -----g---------~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                           |         -.+++++..|.+..++..+.         |..++.++.++++.+|+++|+++|+++.. .+..+.
T Consensus       168 ~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~l---------Gl~~~~v~~d~~~~md~~~L~~~i~~~~~-~g~~p~  237 (476)
T d1js3a_         168 QAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG---------GVKLKAIPSDGKFAMRASALQEALERDKA-AGLIPF  237 (476)
T ss_dssp             HHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHH---------TCEEEEECCCTTSCCCHHHHHHHHHHHHH-TTCEEE
T ss_pred             cccccCcccccccCceEEEecccccHHHHHHHHhc---------CceEEEeccCCCCCcCHHHHHHHHHHHHh-cCCCcE
Confidence                 1         13677899999888765554         77788899888999999999999987432 233566


Q ss_pred             EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh----------hcccCCeEEEecccccCcc--eeE
Q psy5413         207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE----------VCASVDTVMFCLSKGLGAP--VGS  274 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~----------~~~~~dv~~~s~sK~l~~p--~gg  274 (285)
                      +|+.+..+..+ |.+.|   |++|+++|++||+|+|+|+++++...          -.+.+|.+++++|||++.|  .|.
T Consensus       238 ~VvataGtt~~-G~iDp---l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~  313 (476)
T d1js3a_         238 FVVATLGTTSC-CSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSA  313 (476)
T ss_dssp             EEEEEBSCTTT-CCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEE
T ss_pred             EEeecCCCccc-eeecc---HHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCccee
Confidence            77777777777 99999   99999999999999999999883221          1257899999999999985  444


Q ss_pred             EeecCc
Q psy5413         275 ILAGPE  280 (285)
Q Consensus       275 ~~~~~~  280 (285)
                      +++.++
T Consensus       314 ~l~r~~  319 (476)
T d1js3a_         314 MWVKRR  319 (476)
T ss_dssp             EEESCH
T ss_pred             ecccch
Confidence            445543

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.80  E-value=2.4e-19  Score=158.61  Aligned_cols=198  Identities=18%  Similarity=0.116  Sum_probs=143.0

Q ss_pred             eeeccCCcCCCcHHHHHHHHhccc-----CCCCcc----CChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHcc
Q psy5413          69 VDIRSDTISKPTMEMKNYMFNCEV-----GDDVYL----EDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        69 ~~~~~~~~~~~~~~v~~a~~~~~~-----~~~~y~----~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~  137 (285)
                      +.|.....+..+..|.+++.+...     +...+.    ..+...++|+.+++++|.+  .+++++|||+|+..++.++.
T Consensus         9 ~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~l~   88 (381)
T d1elua_           9 TYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLD   88 (381)
T ss_dssp             EECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSC
T ss_pred             EEeeCCcccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcchhhh
Confidence            456666656667778888776543     122222    2234677899999999875  46899999999999999886


Q ss_pred             ccCCCeEEecCCcceeeecc-cccccccccccccceeeeeeecCCCCC--CCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         138 DRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGVTNQKDGT--FDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       138 ~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~--~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      .++|++|++++..|.+.... ..+.      +..|.+++.++.+....  .+.+.+++++++       +|++|++++++
T Consensus        89 ~~~g~~i~~~~~~~~s~~~~~~~~~------~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~-------~t~~v~i~~~~  155 (381)
T d1elua_          89 WHQGDEILLTDCEHPGIIAIVQAIA------ARFGITYRFFPVAATLNQGDAAAVLANHLGP-------KTRLVILSHLL  155 (381)
T ss_dssp             CCTTCEEEEETTCCHHHHHHHHHHH------HHHCCEEEEECCGGGSSSSCHHHHHHTTCCT-------TEEEEEEESBC
T ss_pred             hcCCceEEEeccccceeeecccccc------ccccccccccccccccccchHHHHHHhhhcc-------ccccccccccc
Confidence            67899999988777544321 1122      34578888887643332  235666677766       89999999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHc----CCeEEEeCccC-C---hhhhcccCCeEEEecccccCccee-EEeecCcccc
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEH----NIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPVG-SILAGPEEFI  283 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~----gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~g-g~~~~~~~~i  283 (285)
                      |++ |.++|   +++|.++|++|    ++++++|++++ +   +..-..++|+++++++||+++|.| |++..+++.+
T Consensus       156 n~t-G~~~~---~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~~  229 (381)
T d1elua_         156 WNT-GQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCL  229 (381)
T ss_dssp             TTT-CCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTG
T ss_pred             ccc-cccch---hhHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccchhhHHHhhHHHH
Confidence            999 99999   89999999985    69999999988 2   222234789999999999998654 6666555443

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.80  E-value=3e-19  Score=160.75  Aligned_cols=205  Identities=12%  Similarity=0.050  Sum_probs=148.8

Q ss_pred             eeeeccCCcCCCcHHHHHHHHhccc------C-------CCCccCChhHHHHHHHHHhHcC----------CCcEEEcCC
Q psy5413          68 TVDIRSDTISKPTMEMKNYMFNCEV------G-------DDVYLEDPTCKELQEKAAKLAG----------KEAAIFVPS  124 (285)
Q Consensus        68 ~~~~~~~~~~~~~~~v~~a~~~~~~------~-------~~~y~~~~~~~~l~~~la~~~g----------~~~~~~~~~  124 (285)
                      ++.|.......+++.+.+.+.+...      .       ...|+...+..+||+.++++++          .+.+++++|
T Consensus        38 ~i~l~~~en~l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G  117 (431)
T d1m7ya_          38 IIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAG  117 (431)
T ss_dssp             BEECSSCCCCSCHHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEH
T ss_pred             EEEeecccccccHHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCC
Confidence            6777766556667777777654211      0       1146655567789999988752          235688888


Q ss_pred             hHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccC
Q psy5413         125 GTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHC  202 (285)
Q Consensus       125 Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~  202 (285)
                      +++|+..++.+++ .+||.|+++.++|........        ...|++++.++.++  .+.+|++++++++++. ...+
T Consensus       118 ~~~al~~~~~~l~-~pGd~Vlv~~P~y~~~~~~~~--------~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~-~~~~  187 (431)
T d1m7ya_         118 ATSANETFIFCLA-DPGEAVLIPTPYYPGFDRDLK--------WRTGVEIVPIHCTSSNGFQITETALEEAYQEA-EKRN  187 (431)
T ss_dssp             HHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHTT--------TTTCCEEEEEECCGGGTSCCCHHHHHHHHHHH-HHTT
T ss_pred             HHHHHHHHHHHhc-CCCCEEEEeCCCchhHHHHHH--------HhcCceeccccccchhcccccHHHhhhhhhhh-hhcc
Confidence            8999999999987 699999998887644332221        12377888887643  3568999999888653 2244


Q ss_pred             CceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhcc---------cCC--eEE
Q psy5413         203 ASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVCA---------SVD--TVM  261 (285)
Q Consensus       203 ~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~~---------~~d--v~~  261 (285)
                      .+++++++++|+||| |.+++.+++++|+++|++||+++|+||+|..+          ..+..         ..+  +++
T Consensus       188 ~~~~~i~~~nP~NPt-G~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~  266 (431)
T d1m7ya_         188 LRVKGVLVTNPSNPL-GTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVV  266 (431)
T ss_dssp             CCEEEEEEESSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEE
T ss_pred             CcceEEEecCccccc-cccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEE
Confidence            578999999999999 99999999999999999999999999998721          11111         111  448


Q ss_pred             EecccccCc--ceeEEeecCcccc
Q psy5413         262 FCLSKGLGA--PVGSILAGPEEFI  283 (285)
Q Consensus       262 ~s~sK~l~~--p~gg~~~~~~~~i  283 (285)
                      .|+||.++.  .+.|+++++++++
T Consensus       267 ~s~SK~~~~~G~RiG~~~~~~~~i  290 (431)
T d1m7ya_         267 YSLSKDLGLPGFRVGAIYSNDDMV  290 (431)
T ss_dssp             EESSSSSCCGGGCEEEEEESCHHH
T ss_pred             ecCcccccCCCCccceeccchhhh
Confidence            999999874  6888888877654

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=1.1e-19  Score=163.15  Aligned_cols=208  Identities=16%  Similarity=0.107  Sum_probs=149.0

Q ss_pred             CCeeeeeccCCcCC---CcHHHHHHHHhcccC----CCCccCChhHHHHHHHHHhHc----CC-----CcEEEcCChHHH
Q psy5413          65 NIRTVDIRSDTISK---PTMEMKNYMFNCEVG----DDVYLEDPTCKELQEKAAKLA----GK-----EAAIFVPSGTMG  128 (285)
Q Consensus        65 ~~~~~~~~~~~~~~---~~~~v~~a~~~~~~~----~~~y~~~~~~~~l~~~la~~~----g~-----~~~~~~~~Gs~a  128 (285)
                      ++.+|+|+.+.|..   |.+.+.+++.+....    ...|+...+..+|++.+++++    |.     +.+++++|+++|
T Consensus        37 ~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~a  116 (420)
T d1vp4a_          37 DKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQA  116 (420)
T ss_dssp             STTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHH
T ss_pred             CCCcEecCCcCCCCccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhh
Confidence            56789999987754   455666666554432    246887777888999998875    32     346888889999


Q ss_pred             HHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccc--cccCCceE
Q psy5413         129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTAD--NIHCASTS  206 (285)
Q Consensus       129 ~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~--~~~~~~~~  206 (285)
                      +..++.+++ .+||.|++++++|.......         ...|.+++.++.++ ..+|++.++..+.+..  ......++
T Consensus       117 l~~~~~~~~-~~Gd~Vlv~~P~y~~~~~~~---------~~~g~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~  185 (420)
T d1vp4a_         117 LDLIGKLFL-DDESYCVLDDPAYLGAINAF---------RQYLANFVVVPLED-DGMDLNVLERKLSEFDKNGKIKQVKF  185 (420)
T ss_dssp             HHHHHHHHC-CTTCEEEEEESCCHHHHHHH---------HTTTCEEEEEEEET-TEECHHHHHHHHHHHHHTTCGGGEEE
T ss_pred             HHHHHHhhh-ccccccccccccccchhHHH---------HHHhhhcccccccc-cccccchhhhhhhhhHHHhhccccce
Confidence            999999877 69999999888765543322         34488888888744 3468888776654321  11122455


Q ss_pred             EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---------hhcccCC--eEEEecccccCc-ceeE
Q psy5413         207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---------EVCASVD--TVMFCLSKGLGA-PVGS  274 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~~~~d--v~~~s~sK~l~~-p~gg  274 (285)
                      ++++++|+||| |.+++.+++++|+++|++|++++|+||+|..+.         ......+  +++.+++|+++. .+.|
T Consensus       186 ~~~~~~p~NPt-G~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~~G~RiG  264 (420)
T d1vp4a_         186 IYVVSNFHNPA-GVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIG  264 (420)
T ss_dssp             EEEECSSCTTT-CCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEE
T ss_pred             eeEecCCCCcc-chhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEeccccccccccccc
Confidence            66677899999 999999999999999999999999999987221         1112223  347788887644 7888


Q ss_pred             EeecCccccc
Q psy5413         275 ILAGPEEFIQ  284 (285)
Q Consensus       275 ~~~~~~~~i~  284 (285)
                      ++++++++++
T Consensus       265 ~~~~~~~~i~  274 (420)
T d1vp4a_         265 MVAGSKEFIR  274 (420)
T ss_dssp             EEECCHHHHH
T ss_pred             cccccchhhh
Confidence            9999888764

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=7.1e-19  Score=158.01  Aligned_cols=225  Identities=14%  Similarity=0.144  Sum_probs=145.6

Q ss_pred             cccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccC----CcCCCcHHHHHHHHhcccC--CCCc--cCC
Q psy5413          29 LVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSD----TISKPTMEMKNYMFNCEVG--DDVY--LED  100 (285)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~--~~~y--~~~  100 (285)
                      .+.++.+.++|+..+                      ++++||.++    +.++.+|+|.+|+.+++..  +..+  ..+
T Consensus        28 ~i~~~~G~~l~D~dG----------------------~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~   85 (429)
T d1s0aa_          28 PVVSAEGCELILSDG----------------------RRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH   85 (429)
T ss_dssp             EEEEEEBTEEEETTS----------------------CEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEEC
T ss_pred             ceEEeECCEEEECCC----------------------CEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCCccc
Confidence            466777888887554                      455565443    3466899999999987753  2111  234


Q ss_pred             hhHHHHHHHHHhHc--CCCcEEEcCChHHHHHHHHHHcccc-----C-CCeEEe-cCCcceeeecccccccc-cccccc-
Q psy5413         101 PTCKELQEKAAKLA--GKEAAIFVPSGTMGNLIAIMTHCDR-----R-DSEIIV-GDCSHIMLWEQGGASQT-SVYSQI-  169 (285)
Q Consensus       101 ~~~~~l~~~la~~~--g~~~~~~~~~Gs~a~~~al~~~~~~-----~-g~~vi~-~~~~h~~~~~~~~~~~~-~~~~~~-  169 (285)
                      +...++.+++.+..  +.+.++|++|||+|++.|++++...     . .++|+. ...+|+.+.....+... ...... 
T Consensus        86 ~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~  165 (429)
T d1s0aa_          86 APAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLW  165 (429)
T ss_dssp             HHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGG
T ss_pred             hHHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCcccccccc
Confidence            55778888888886  4456789999999999999998632     1 224444 57788877543333211 111111 


Q ss_pred             --cceeeeeeecCC------CCCCCHHHHHHHhcccccccCCceEEEEEeccc-CCCCeeeCCHHHHHHHHHHHHHcCCe
Q psy5413         170 --GRVLMRGVTNQK------DGTFDLDEMEAKFSTADNIHCASTSLVCVENTH-NYCGGTVLPMQWLRELKARCQEHNIP  240 (285)
Q Consensus       170 --~g~~~~~~~~~~------~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~-n~~gG~~~~~~~l~~i~~la~~~gi~  240 (285)
                        ........|...      ....+++++++.+.+    +++++++|++|++. +..|....|++++++|+++|++||++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gil  241 (429)
T d1s0aa_         166 KGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAA----HRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGIL  241 (429)
T ss_dssp             TTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHH----HTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCE
T ss_pred             Cccccccccccccccccccccchhhhhhhhhhhhh----cCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcc
Confidence              111111122111      112356666666655    45589999999976 55434578899999999999999999


Q ss_pred             EEEeCccCChh-----hhcccCCeE--EEecccccCc---ceeEEeecC
Q psy5413         241 VHMDGARLPLA-----EVCASVDTV--MFCLSKGLGA---PVGSILAGP  279 (285)
Q Consensus       241 li~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~  279 (285)
                      +|+||+++++.     ...+..++.  +.+++|.+++   |.++++..+
T Consensus       242 lI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~gK~l~gG~~p~~av~~~~  290 (429)
T d1s0aa_         242 LIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTR  290 (429)
T ss_dssp             EEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECH
T ss_pred             eehhhccccccccccccccccceecccccccccccccccccccchhhHH
Confidence            99999988442     333455655  6777799855   777655543

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=4.2e-19  Score=157.32  Aligned_cols=202  Identities=16%  Similarity=0.072  Sum_probs=154.0

Q ss_pred             CCeeeeeccCCcCCCc-HHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----CC----C-cEEEcCChHHHHHHHH
Q psy5413          65 NIRTVDIRSDTISKPT-MEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----GK----E-AAIFVPSGTMGNLIAI  133 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~~-~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g~----~-~~~~~~~Gs~a~~~al  133 (285)
                      ++.+++|+.+.|..+. +.+++++.+.... ...|++..+..+||+.+++++    |.    + .+++++++++++..++
T Consensus        25 ~~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~  104 (382)
T d1u08a_          25 QHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAI  104 (382)
T ss_dssp             HTTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHH
T ss_pred             cCCCEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHH
Confidence            3567999999998754 5788888766654 457888888899999999875    32    3 3688899999999999


Q ss_pred             HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      ++++ .+|+.|+++++++.......         ...|..++.++.. ..+..|++++++.+.+       +++++++++
T Consensus       105 ~~l~-~~gd~vl~~~p~y~~~~~~~---------~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~i~l~~  167 (382)
T d1u08a_         105 TALV-RNGDEVICFDPSYDSYAPAI---------ALSGGIVKRMALQPPHFRVDWQEFAALLSE-------RTRLVILNT  167 (382)
T ss_dssp             HHHC-CTTCEEEEEESCCTTHHHHH---------HHTTCEEEEEECCTTTCCCCHHHHHHHCCT-------TEEEEEEES
T ss_pred             hhcc-cccceEEEecccccchhhhh---------hhccccceecccccccccCCHHHHhhhhcc-------CccEEEECC
Confidence            9987 69999999877764433211         2336555555553 3445899999999988       899999999


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC----------hhhhcccC--CeEEEecccccCc--ceeEEeec
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP----------LAEVCASV--DTVMFCLSKGLGA--PVGSILAG  278 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~----------~~~~~~~~--dv~~~s~sK~l~~--p~gg~~~~  278 (285)
                      |+||| |.+++.+++++|+++|++++++++.|+++..          ........  -+++.|+||.++.  .+.|+++.
T Consensus       168 P~NPt-G~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~  246 (382)
T d1u08a_         168 PHNPS-ATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVA  246 (382)
T ss_dssp             SCTTT-CCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEEC
T ss_pred             CCccc-ccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchhhhc
Confidence            99999 9999999999999999999999999999761          11111112  2559999998764  78888888


Q ss_pred             Cccccc
Q psy5413         279 PEEFIQ  284 (285)
Q Consensus       279 ~~~~i~  284 (285)
                      ++++++
T Consensus       247 ~~~~~~  252 (382)
T d1u08a_         247 PAPISA  252 (382)
T ss_dssp             CHHHHH
T ss_pred             cchhHH
Confidence            877654

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.79  E-value=1.4e-18  Score=157.38  Aligned_cols=205  Identities=14%  Similarity=0.071  Sum_probs=126.8

Q ss_pred             CCeeeeeccC----CcCCCcHHHHHHHHhcccC-----CCCcc---CChhHHHHHHHHHhHc--CCCcEEEcCChHHHHH
Q psy5413          65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVG-----DDVYL---EDPTCKELQEKAAKLA--GKEAAIFVPSGTMGNL  130 (285)
Q Consensus        65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~-----~~~y~---~~~~~~~l~~~la~~~--g~~~~~~~~~Gs~a~~  130 (285)
                      |++++||.++    +.++.||+|.+++.++...     ...+.   ......+|.+.+.+..  +.+.++|++|||+|++
T Consensus        52 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~~~~~v~f~~sGseAve  131 (461)
T d1ohwa_          52 GNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNE  131 (461)
T ss_dssp             SCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHH
T ss_pred             CCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhcccccccccchHHHHHHHHHHHHhhhccCcceeeeecchhhhhH
Confidence            5666666443    4577999999999887642     11222   2233556666666654  3567899999999999


Q ss_pred             HHHHHcccc--------------------------CCC-eEEe-cCCcceeeeccccccccccccccc----ceeeeeee
Q psy5413         131 IAIMTHCDR--------------------------RDS-EIIV-GDCSHIMLWEQGGASQTSVYSQIG----RVLMRGVT  178 (285)
Q Consensus       131 ~al~~~~~~--------------------------~g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~----g~~~~~~~  178 (285)
                      .|++++...                          .++ .||. ...||+.+..+..++..+.++...    .......+
T Consensus       132 ~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~  211 (461)
T d1ohwa_         132 NAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFP  211 (461)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCC
T ss_pred             HHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCcccccc
Confidence            999987421                          122 3554 578898775433333111111110    11111111


Q ss_pred             cCCC------------CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413         179 NQKD------------GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA  246 (285)
Q Consensus       179 ~~~~------------~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea  246 (285)
                      ....            ...+++++++.+.. ...+.+++++|++|+.++..|....|++++++|+++|++||++||+||+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV  290 (461)
T d1ohwa_         212 RLKYPLEEFVKENQQEEARCLEEVEDLIVK-YRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEV  290 (461)
T ss_dssp             CCCSSGGGCHHHHHHHHHHHHHHHHHHHHH-HHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred             cccccccccccccchhhhhhHHHHHHHHHH-HHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceecccc
Confidence            0000            01234556665533 1124558999999999998867778899999999999999999999999


Q ss_pred             cCChh-----hhcccCCe--E--EEecccccCc
Q psy5413         247 RLPLA-----EVCASVDT--V--MFCLSKGLGA  270 (285)
Q Consensus       247 ~~~~~-----~~~~~~dv--~--~~s~sK~l~~  270 (285)
                      ++++.     ...++.++  .  +.+++|.+++
T Consensus       291 ~tG~gRtG~~~~~e~~gi~~~PDiv~~gK~l~~  323 (461)
T d1ohwa_         291 QTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMT  323 (461)
T ss_dssp             TTCSSTTSSSSGGGGGCCSSCCSEEEECGGGSS
T ss_pred             ccccccccccccccccccccCchhhhhhhcccc
Confidence            88432     22232222  2  5577799876

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.79  E-value=4.3e-19  Score=156.59  Aligned_cols=177  Identities=18%  Similarity=0.121  Sum_probs=135.2

Q ss_pred             HHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccccc
Q psy5413          81 MEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGA  160 (285)
Q Consensus        81 ~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~  160 (285)
                      ++-++++.+.+.. ..+...+...++|+.+++++|.+.+++++|||+|+.++++++-.++||+|+++..+|..+......
T Consensus        12 ~~~~~~~~~~~~~-~~~~~G~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~~ai~~   90 (376)
T d1mdoa_          12 AEELAAVKTVLDS-GWITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVL   90 (376)
T ss_dssp             HHHHHHHHHHHHH-TCCSSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CCCcCCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccccccchhc
Confidence            3444555554432 344557889999999999999999999999999999999997447999999999888766543333


Q ss_pred             ccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCC
Q psy5413         161 SQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNI  239 (285)
Q Consensus       161 ~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi  239 (285)
                      .         |...+.+..++ .+.+|+++|+++|++       +|++|++.+..    |...+   +++|.++|++||+
T Consensus        91 ~---------g~~pv~~d~~~~~~~~d~~~l~~~i~~-------~tkaIi~~h~~----G~~~~---~~~i~~i~~~~~i  147 (376)
T d1mdoa_          91 L---------GANPVMVDVDRDTLMVTPEHIEAAITP-------QTKAIIPVHYA----GAPAD---LDAIYALGERYGI  147 (376)
T ss_dssp             T---------TCEEEEECBCTTTCCBCHHHHHHHCCT-------TEEEECCBCGG----GCCCC---HHHHHHHHHHHTC
T ss_pred             c---------ccceeeecccccccCCCHHHHHHhcCC-------CCeEEEEeCCC----CCccc---hhHHHHHHHhcCc
Confidence            3         77777777654 567999999999988       89999987765    88889   9999999999999


Q ss_pred             eEEEeCccCChh---h-hcccCC--eEEEecccccCcceeEEeecCcc
Q psy5413         240 PVHMDGARLPLA---E-VCASVD--TVMFCLSKGLGAPVGSILAGPEE  281 (285)
Q Consensus       240 ~li~Dea~~~~~---~-~~~~~d--v~~~s~sK~l~~p~gg~~~~~~~  281 (285)
                      +||.|++|+...   . .....|  ++.+..+|.++..-||+++++.+
T Consensus       148 ~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~GG~i~t~~~  195 (376)
T d1mdoa_         148 PVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNP  195 (376)
T ss_dssp             CBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCSSSCEEEEESCH
T ss_pred             eEEeccchhccCeeCCeecccccCccccCCCcCCCCCCCCCEEEEech
Confidence            999999988211   1 112233  33455679998877887776643

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=2.4e-18  Score=152.58  Aligned_cols=182  Identities=18%  Similarity=0.158  Sum_probs=138.8

Q ss_pred             CcHHHHHHHHhcccCCCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeec
Q psy5413          79 PTMEMKNYMFNCEVGDDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWE  156 (285)
Q Consensus        79 ~~~~v~~a~~~~~~~~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~  156 (285)
                      ..++-.+...+.......|+  .+|....||+.|+++.|.+.++.++||..|+.+++..++ ++||+|++.+..|+.+..
T Consensus        34 ~~~~~~~~~~~~~~~~~~YsR~~nPT~~~LE~~la~LE~~~~a~~~~SGmaAi~~~~~~l~-~~gd~il~~~~~Yg~t~~  112 (421)
T d2ctza1          34 KSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLA-QAGDNIVSTPNLYGGTFN  112 (421)
T ss_dssp             SCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEECSCCCHHHHH
T ss_pred             CCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhhc-ccccceeecCCcCCchhH
Confidence            34443333333222223454  679999999999999999999999999999999998877 699999998766654433


Q ss_pred             cc-ccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHH
Q psy5413         157 QG-GASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQ  235 (285)
Q Consensus       157 ~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~  235 (285)
                      .. ...      ..+|+++..+...    ...+..++.+++       +|++|++|.|.||+ ..+.|   |++|+++||
T Consensus       113 l~~~~~------~~~gi~~~~~d~~----~~~~~~~~~~~~-------~t~li~~EtpsNP~-l~v~D---i~~i~~iA~  171 (421)
T d2ctza1         113 QFKVTL------KRLGIEVRFTSRE----ERPEEFLALTDE-------KTRAWWVESIGNPA-LNIPD---LEALAQAAR  171 (421)
T ss_dssp             HHHTHH------HHTTCEEEECCTT----CCHHHHHHHCCT-------TEEEEEEESSCTTT-CCCCC---HHHHHHHHH
T ss_pred             HHHHHH------hhccccceecccc----cCcchhccccCC-------CceEEEEcCCCcce-eEecc---hHHHHHHHH
Confidence            21 111      3457777665431    245666777777       89999999999999 99999   999999999


Q ss_pred             HcCCeEEEeCccC-Ch---hhhcccCCeEEEecccccCc---ceeEEeecCccc
Q psy5413         236 EHNIPVHMDGARL-PL---AEVCASVDTVMFCLSKGLGA---PVGSILAGPEEF  282 (285)
Q Consensus       236 ~~gi~li~Dea~~-~~---~~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~  282 (285)
                      ++|+++++|...+ ++   ..+..++|+++.|.+|.++|   -+||+++.+++.
T Consensus       172 ~~g~~~vvDnT~a~tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~  225 (421)
T d2ctza1         172 EKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNF  225 (421)
T ss_dssp             HHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCS
T ss_pred             hcCCceEecccccccceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCcc
Confidence            9999999999986 32   35667999999999999999   677888765543

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.1e-18  Score=153.87  Aligned_cols=181  Identities=12%  Similarity=0.059  Sum_probs=142.8

Q ss_pred             cHHHHHHHHhcccCCCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecc
Q psy5413          80 TMEMKNYMFNCEVGDDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ  157 (285)
Q Consensus        80 ~~~v~~a~~~~~~~~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~  157 (285)
                      .++..++......+...|+  .+|....|++.++++.|.+.++.++||..|+..++.+++ ++|++|++.+..|+.+...
T Consensus        35 ~~~~~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEg~~~a~~~~SGMaAi~~~l~~l~-~~Gd~iv~~~~~Yg~T~~l  113 (391)
T d1cl1a_          35 VEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFI-EQGDHVLMTNTAYEPSQDF  113 (391)
T ss_dssp             HHHHHHHHHTTTTTCCCCTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEETTSCHHHHHH
T ss_pred             HHHHHHHhcCCccCceEeECCCChhHHHHHHHHHHHhCCccEEEeccccceeeehhhccc-CCCCeEEEecccccchhhh
Confidence            3345555554444444565  789999999999999999999999999999999998877 6999999987776655432


Q ss_pred             cc-cccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH
Q psy5413         158 GG-ASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE  236 (285)
Q Consensus       158 ~~-~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~  236 (285)
                      .. ..      ..+|+++..+...     |.+++++++++       ++++|++|.|.||+ ..+.|   |++++++|++
T Consensus       114 ~~~~l------~~~Gi~~~~~d~~-----d~~~~~~~i~~-------~t~~i~~EtpsNP~-l~v~D---i~~i~~~a~~  171 (391)
T d1cl1a_         114 CSKIL------SKLGVTTSWFDPL-----IGADIVKHLQP-------NTKIVFLESPGSIT-MEVHD---VPAIVAAVRS  171 (391)
T ss_dssp             HHHTG------GGGTCEEEEECTT-----CGGGGGGTCCT-------TEEEEEEESSCTTT-CCCCC---HHHHHHHHHH
T ss_pred             hhhcc------cccccccccccCc-----ccccccccccc-------ccceeeecccCccc-ccccc---cHHHHHHHHh
Confidence            21 11      3457777766542     67888888887       89999999999999 99999   9999999977


Q ss_pred             c--CCeEEEeCccCCh---hhhcccCCeEEEecccccCc---ceeEEeecCcccc
Q psy5413         237 H--NIPVHMDGARLPL---AEVCASVDTVMFCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       237 ~--gi~li~Dea~~~~---~~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                      +  |+++++|...+++   ..+.-++|+++.|.+|+++|   -+||++++++++.
T Consensus       172 ~~~g~~~vVDnT~atP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~  226 (391)
T d1cl1a_         172 VVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCW  226 (391)
T ss_dssp             HCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTH
T ss_pred             ccCCcEEEEeccccchhhhcccccccceEEeecchhccccccccccceecccccc
Confidence            4  9999999998833   34456899999999999999   6788888777654

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.78  E-value=2.6e-18  Score=151.45  Aligned_cols=167  Identities=17%  Similarity=0.208  Sum_probs=132.7

Q ss_pred             CCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-cccccccccccc
Q psy5413          94 DDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIG  170 (285)
Q Consensus        94 ~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~  170 (285)
                      ...|+  .+|....||++|+++.|.+.++.++||..|+..++.+++ ++||+|++.+..|+.+.... ...      ..+
T Consensus        58 ~~~Y~R~~nPt~~~LE~~la~LEgg~~a~~~sSGMaAi~~~l~~l~-~~Gd~iv~~~~~Yg~t~~l~~~~~------~~~  130 (398)
T d1qgna_          58 SFEYGRYGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETIL------PKM  130 (398)
T ss_dssp             CCCBGGGCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHS-CSSCEEEEETTSCHHHHHHHHHTG------GGG
T ss_pred             CceecCCCChHHHHHHHHHHHHhCCceEEEecCcchHHHHHHhhcc-cccccccccccccchhhhhhcccc------ccc
Confidence            34555  689999999999999999999999999999999999877 69999998776655443311 111      345


Q ss_pred             ceeeeeeecCCCCCCCHHHHHH-HhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC
Q psy5413         171 RVLMRGVTNQKDGTFDLDEMEA-KFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP  249 (285)
Q Consensus       171 g~~~~~~~~~~~~~~d~~~l~~-~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~  249 (285)
                      |..+..+...     +.++.++ .+.+       ++++|++|.|.||+ ..+.|   |++|+++||++|+++++|...++
T Consensus       131 gi~~~~~~~~-----~~~~~~~~~~~~-------~t~~v~~EspsNP~-l~v~D---i~~ia~ia~~~g~~~vVDnT~at  194 (398)
T d1qgna_         131 GITATVIDPA-----DVGALELALNQK-------KVNLFFTESPTNPF-LRCVD---IELVSKLCHEKGALVCIDGTFAT  194 (398)
T ss_dssp             TCEEEEECSS-----CHHHHHHHHHHS-------CEEEEEEESSCTTT-CCCCC---HHHHHHHHHHTTCEEEEECTTTC
T ss_pred             cccccccccc-----chhhhhhhhccc-------cceEEEccCccccc-cccch---HHHHHHHHhhcCCEEEecceeec
Confidence            7666655431     4454444 4555       89999999999999 99999   99999999999999999999873


Q ss_pred             h---hhhcccCCeEEEecccccCc---ceeEEeecCcccc
Q psy5413         250 L---AEVCASVDTVMFCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       250 ~---~~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                      .   ..+..++|+++.|++|+++|   -+||+++++++++
T Consensus       195 P~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~  234 (398)
T d1qgna_         195 PLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLV  234 (398)
T ss_dssp             TTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHH
T ss_pred             cccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhh
Confidence            3   34456899999999999999   6788888877654

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.78  E-value=1.7e-18  Score=151.97  Aligned_cols=159  Identities=22%  Similarity=0.218  Sum_probs=128.8

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT  178 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~  178 (285)
                      .+|....||++|+++.|.+.++.++||..|+. ++..++ ++|++|++.+..|+.+......    .. ..+|+.+..+.
T Consensus        47 ~nPt~~~le~~la~LE~~~~a~~fsSGMaAis-all~ll-~~Gd~vv~~~~~Yg~t~~l~~~----~~-~~~gi~~~~~d  119 (380)
T d1ibja_          47 GNPTRDALESLLAKLDKADRAFCFTSGMAALS-AVTHLI-KNGEEIVAGDDVYGGSDRLLSQ----VV-PRSGVVVKRVN  119 (380)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHH-HHHTTS-CTTCEEEEESSCCHHHHHHHHH----TS-GGGTCEEEEEC
T ss_pred             CChHHHHHHHHHHHHcCCceEEehhhHHHHHH-HHHHhh-CCCCEEEEEecccccccchhhh----hh-ccccccccccC
Confidence            68999999999999999999999999999986 555555 6999999987776555432111    11 24577766655


Q ss_pred             cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC---hhhhcc
Q psy5413         179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP---LAEVCA  255 (285)
Q Consensus       179 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~---~~~~~~  255 (285)
                      .     .+++++++++++       +|++|++|.|.||+ ..+.|   |++|+++||++|+++|+|...++   ...+..
T Consensus       120 ~-----~~~~~~~~ai~~-------~t~li~~EtpsNP~-l~v~D---i~~i~~iA~~~g~~~vVDnT~atP~~~~Pl~~  183 (380)
T d1ibja_         120 T-----TKLDEVAAAIGP-------QTKLVWLESPTNPR-QQISD---IRKISEMAHAQGALVLVDNSIMSPVLSRPLEL  183 (380)
T ss_dssp             T-----TSHHHHHHHCCS-------SEEEEEECSSCTTT-CCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTCCGGGT
T ss_pred             c-----chHHHHHHHhcc-------CccEEEeccccccc-ccccc---HHHHHHHHHHcCCeEEeecccccccccccccc
Confidence            4     388999999988       89999999999999 99999   99999999999999999999873   234556


Q ss_pred             cCCeEEEecccccCc---ceeEEeecCc
Q psy5413         256 SVDTVMFCLSKGLGA---PVGSILAGPE  280 (285)
Q Consensus       256 ~~dv~~~s~sK~l~~---p~gg~~~~~~  280 (285)
                      ++|+++.|++|+++|   .+||+++.++
T Consensus       184 GaDiVvhS~TKyi~GhsDv~~G~v~~~~  211 (380)
T d1ibja_         184 GADIVMHSATKFIAGHSDVMAGVLAVKG  211 (380)
T ss_dssp             TCSEEEEETTTTTTCSSCCCCEEEEECS
T ss_pred             CCCEEEecccceeccccCccccccccch
Confidence            899999999999999   5666665543

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=2e-18  Score=151.65  Aligned_cols=159  Identities=16%  Similarity=0.143  Sum_probs=130.3

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|....||+.|+++.|.+.++.++||..|+..++.+++ ++|++|++++..++.+.... ...      ..++..+..+
T Consensus        48 ~nPt~~~le~~la~LEgg~~a~~~sSGMaAi~~~l~~l~-~~gd~vv~~~~~yg~t~~~~~~~~------~~~g~~~~~~  120 (384)
T d1cs1a_          48 GNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFL-KPGDLLVAPHDCYGGSYRLFDSLA------KRGCYRVLFV  120 (384)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHHH------TTTSCEEEEE
T ss_pred             CCHHHHHHHHHHHHHhCCCceEEecChHHHHHHHHhhcc-cccceecccccccchhhhhhhhhh------cccccccccc
Confidence            679999999999999999999999999999999998877 69999998876654443211 111      2345555544


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC---hhhhc
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP---LAEVC  254 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~---~~~~~  254 (285)
                      ..     .|.+++++++.+       +|++|++|.|.||+ ..+.|   |++|+++||++|+++|+|...++   ...+.
T Consensus       121 d~-----~d~~~~~~~~~~-------~t~~v~~EspsNP~-l~v~D---i~~i~~ia~~~g~~~vVDNT~atP~~~~Pl~  184 (384)
T d1cs1a_         121 DQ-----GDEQALRAALAE-------KPKLVLVESPSNPL-LRVVD---IAKICHLAREVGAVSVVDNTFLSPALQNPLA  184 (384)
T ss_dssp             CT-----TCHHHHHHHHHT-------CCSEEEEECSCTTT-CCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCCGGG
T ss_pred             cC-----CCHHHHHhhccc-------cccEEEEecccccc-ceecc---HHHHhhhhhhcCcEEEEeccccCcccccccc
Confidence            43     388999999988       89999999999999 99999   99999999999999999999873   23455


Q ss_pred             ccCCeEEEecccccCc---ceeEEeecCc
Q psy5413         255 ASVDTVMFCLSKGLGA---PVGSILAGPE  280 (285)
Q Consensus       255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~  280 (285)
                      .++|+++.|.+|+++|   .++|+++++.
T Consensus       185 ~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~  213 (384)
T d1cs1a_         185 LGADLVLHSCTKYLNGHSDVVAGVVIAKD  213 (384)
T ss_dssp             GTCSEEEEETTTTTTCSSCCCCEEEEESS
T ss_pred             cCCCEEEEccccccccCCCcccccccCCc
Confidence            6899999999999999   6777666644

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.77  E-value=7.7e-19  Score=154.83  Aligned_cols=156  Identities=15%  Similarity=0.139  Sum_probs=120.3

Q ss_pred             hhHHHHHHHHHhHcCCC---cEEEcCChHHHHHHHHHHccccCCCeEEe-c-CCcceeeecccccccccccccccceeee
Q psy5413         101 PTCKELQEKAAKLAGKE---AAIFVPSGTMGNLIAIMTHCDRRDSEIIV-G-DCSHIMLWEQGGASQTSVYSQIGRVLMR  175 (285)
Q Consensus       101 ~~~~~l~~~la~~~g~~---~~~~~~~Gs~a~~~al~~~~~~~g~~vi~-~-~~~h~~~~~~~~~~~~~~~~~~~g~~~~  175 (285)
                      ....++++..++.++.+   .++++++|++|+..++.++.  +++.|++ + .++|.++.....+.         |++++
T Consensus        50 ~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~--~~~~vi~~~~~~~~~~~~~~~~l~---------g~~~v  118 (366)
T d2aeua1          50 YFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK--PKKVIHYLPELPGHPSIERSCKIV---------NAKYF  118 (366)
T ss_dssp             HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHC--CSEEEEECSSSSCCTHHHHHHHHT---------TCEEE
T ss_pred             hhHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhC--CCCEEEEecCCCcchhHHHHHHhc---------CCeEE
Confidence            34667888877777643   46889999999999998753  5565544 4 46777665533333         66654


Q ss_pred             eeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----
Q psy5413         176 GVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----  250 (285)
Q Consensus       176 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----  250 (285)
                      .  .     .|+++|+++|++       +|++|++++|+|++   +++.++|++|+++|++||+++|+||+|...     
T Consensus       119 ~--~-----~d~e~l~~~i~~-------~tk~i~~~~p~n~~---~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~  181 (366)
T d2aeua1         119 E--S-----DKVGEILNKIDK-------DTLVIITGSTMDLK---VIELENFKKVINTAKNKEAIVFVDDASGARVRLLF  181 (366)
T ss_dssp             E--E-----SCHHHHHTTCCT-------TEEEEEECBCTTSC---BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHT
T ss_pred             C--C-----CCHHHHHHhcCC-------CceEEEEEecCCCC---cCCHHHHHHHHHHhccCcEEEEEecCccccccccc
Confidence            3  2     289999999988       89999999998864   456667999999999999999999998721     


Q ss_pred             ---hhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         251 ---AEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       251 ---~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                         .....++|+++.|+||+++|+++|++++++++++
T Consensus       182 ~~~~~~~~~~di~~~S~sK~~~g~~~G~i~~~~~~i~  218 (366)
T d2aeua1         182 NQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVD  218 (366)
T ss_dssp             TCCCHHHHTCSEEEEETTSSSSSCSCEEEEEEHHHHH
T ss_pred             cCCCHhhcCceEEEecccccccccceeEEEecHHHHH
Confidence               1223478999999999999999999999998875

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.76  E-value=2.5e-18  Score=153.28  Aligned_cols=202  Identities=13%  Similarity=0.048  Sum_probs=142.3

Q ss_pred             eeeeeccCCc---C---CCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcCC--------CcEEEcC--ChH--
Q psy5413          67 RTVDIRSDTI---S---KPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAGK--------EAAIFVP--SGT--  126 (285)
Q Consensus        67 ~~~~~~~~~~---~---~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~--------~~~~~~~--~Gs--  126 (285)
                      +.++|+.+.+   .   ...+.|++|+.+....  ...|++..+..+|++.+++++..        +..+.+.  +|+  
T Consensus        29 ~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~  108 (401)
T d7aata_          29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGS  108 (401)
T ss_dssp             TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred             CcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHH
Confidence            3477777632   1   1357888887765543  23688888899999999998632        1222222  122  


Q ss_pred             -HHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCC
Q psy5413         127 -MGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCA  203 (285)
Q Consensus       127 -~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~  203 (285)
                       .++..+++.++ .+||+|+++++++.......         ...|.+++.++..  ..+..+++.+++.+..    ..+
T Consensus       109 ~~~~~~~~~~l~-~pGd~Vlv~~P~y~~y~~~~---------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  174 (401)
T d7aata_         109 LRVGANFLQRFF-KFSRDVYLPKPSWGNHTPIF---------RDAGLQLQAYRYYDPKTCSLDFTGAMEDISK----IPE  174 (401)
T ss_dssp             HHHHHHHHHHHC-TTCCEEEEEESCCTTHHHHH---------HHTTCEEEEEECEETTTTEECHHHHHHHHTT----SCT
T ss_pred             HHHHHHhhHhhc-CCCceEEEecCCCcchhhHH---------HHcCCeEEEEeccccccccccHHHHHHHHhc----CCC
Confidence             34556666666 69999999988875544322         3448888888753  3456789998888865    233


Q ss_pred             ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh------------hccc-CC-eEEEecccccC
Q psy5413         204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE------------VCAS-VD-TVMFCLSKGLG  269 (285)
Q Consensus       204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~------------~~~~-~d-v~~~s~sK~l~  269 (285)
                      +++++++++|+||| |.+++.+++++|+++|++||+++|.||+|..+..            .... .. +++.+++|.++
T Consensus       175 ~~~~iii~~p~NPT-G~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~  253 (401)
T d7aata_         175 KSIILLHACAHNPT-GVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMG  253 (401)
T ss_dssp             TCEEEEESSSCTTT-CCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC
T ss_pred             ceEEEEecCCCCCc-cccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccce
Confidence            78999999999999 9999999999999999999999999999872211            1112 22 44789999876


Q ss_pred             c--ceeEEeecCcccc
Q psy5413         270 A--PVGSILAGPEEFI  283 (285)
Q Consensus       270 ~--p~gg~~~~~~~~i  283 (285)
                      .  .+.|+++...+++
T Consensus       254 ~~G~RiG~~~~~~~~~  269 (401)
T d7aata_         254 LYGERAGAFTVICRDA  269 (401)
T ss_dssp             CGGGCEEEEEEECSSH
T ss_pred             eeccccceeecchHHH
Confidence            6  6788887766544

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=1.1e-17  Score=147.59  Aligned_cols=195  Identities=18%  Similarity=0.162  Sum_probs=140.6

Q ss_pred             eeeccCCcCCCcHHHHHHHHhcccCC-----CCcc----CChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHc-
Q psy5413          69 VDIRSDTISKPTMEMKNYMFNCEVGD-----DVYL----EDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTH-  136 (285)
Q Consensus        69 ~~~~~~~~~~~~~~v~~a~~~~~~~~-----~~y~----~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~-  136 (285)
                      |.|.+...+..++.|.+++.+.....     ..+.    ......+.|+.+++++|++  .++|++|+|+++..++..+ 
T Consensus         3 iyld~a~~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~   82 (376)
T d1eg5a_           3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVA   82 (376)
T ss_dssp             EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHH
T ss_pred             EEEECcccccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhccc
Confidence            34555554566788999987665431     1111    1223567789999999986  4699999999998887643 


Q ss_pred             --cccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         137 --CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       137 --~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                        ...+|+.+++....|..........      +..|.+++.+|.++++.+|+++++++|++       +|++|++++++
T Consensus        83 ~~~~~~g~~v~~~~~~~~~~~~~~~~~------~~~g~~v~~vp~~~~~~id~~~l~~~i~~-------~t~lv~is~v~  149 (376)
T d1eg5a_          83 ETFEKRKRTIITTPIEHKAVLETMKYL------SMKGFKVKYVPVDSRGVVKLEELEKLVDE-------DTFLVSIMAAN  149 (376)
T ss_dssp             HHTTTTCCEEEECTTSCHHHHHHHHHH------HHTTCEEEECCBCTTSCBCHHHHHHHCCT-------TEEEEEEESBC
T ss_pred             ccccccCcccccccccchhhHHHHHHH------HhcCCEEEEEcCCCCCeECHHHHHHhcCC-------CceEEEEECCc
Confidence              2345677777666655443322222      45589999999888889999999999988       89999999999


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHH--cCCeEEEeCccC-Chh---hhcccCCeEEEecccccCcceeEEeecCc
Q psy5413         215 NYCGGTVLPMQWLRELKARCQE--HNIPVHMDGARL-PLA---EVCASVDTVMFCLSKGLGAPVGSILAGPE  280 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~--~gi~li~Dea~~-~~~---~~~~~~dv~~~s~sK~l~~p~gg~~~~~~  280 (285)
                      +++ |.+.|   ++++.++++.  .|+++++|++|. +..   .-..++|+++++++||+|.+..|++..++
T Consensus       150 ~~t-G~~~~---~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~gp~G~~~l~~~~  217 (376)
T d1eg5a_         150 NEV-GTIQP---VEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRK  217 (376)
T ss_dssp             TTT-CBBCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECT
T ss_pred             ccc-ceeee---ehhhhhhhhhcccCceeEEEeeeccccccccccccCccceecccceeecCCCceeEEecc
Confidence            999 99999   7777776644  599999999988 222   22357899999999998654345554433

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.75  E-value=1.5e-17  Score=148.54  Aligned_cols=201  Identities=17%  Similarity=0.163  Sum_probs=150.9

Q ss_pred             CCeeeeeccCCcCCCcHHHHHHHHhcccCC--C----Ccc----CChhHHHHHHHHHhHcCCCc---EEEcCChHHHHHH
Q psy5413          65 NIRTVDIRSDTISKPTMEMKNYMFNCEVGD--D----VYL----EDPTCKELQEKAAKLAGKEA---AIFVPSGTMGNLI  131 (285)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~----~y~----~~~~~~~l~~~la~~~g~~~---~~~~~~Gs~a~~~  131 (285)
                      +++++.|.+...+..++.|++++.+.....  .    .+.    .....++.|+.+++++|.+.   +++++++++++..
T Consensus        20 ~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~   99 (408)
T d1t3ia_          20 GHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINL   99 (408)
T ss_dssp             TEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHH
T ss_pred             CCCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHH
Confidence            456678887777777889999987654321  1    111    12346788999999999752   5788888989888


Q ss_pred             HHHHc---cccCCCeEEecCCcceeeeccc-ccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEE
Q psy5413         132 AIMTH---CDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSL  207 (285)
Q Consensus       132 al~~~---~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~  207 (285)
                      ++..+   ..++|++|++.+..|.+..... ...      ...|..+..++.+.++..+.+.+++++++       +|++
T Consensus       100 ~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~------~~~g~~v~~~~~~~~~~~~~~~l~~~~~~-------~t~l  166 (408)
T d1t3ia_         100 VAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVA------AKTGAVLKFVQLDEQESFDLEHFKTLLSE-------KTKL  166 (408)
T ss_dssp             HHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHH------HHHCCEEEEECBCTTSSBCHHHHHHHCCT-------TEEE
T ss_pred             HHhhccccccCCCCEEEeecccchhhhhhhhhhh------hccCceEeeeeccccccccHHHhhhccCC-------CceE
Confidence            77653   2357899998877775443211 122      34588888888877888899999999988       8999


Q ss_pred             EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCcceeEEeecCccc
Q psy5413         208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPVGSILAGPEEF  282 (285)
Q Consensus       208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~  282 (285)
                      |.+.+.+|.+ |.+.|   +++|.++|+++|+++++|.+|+ +   +.....++|+++++.+||+|++-.|++..++++
T Consensus       167 v~i~~~~~~t-G~~~p---~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~~  241 (408)
T d1t3ia_         167 VTVVHISNTL-GCVNP---AEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEI  241 (408)
T ss_dssp             EEEESBCTTT-CBBCC---HHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHH
T ss_pred             EEEecccccc-cccCc---HHHHhhhhhccCceeeeccceecccccccccccCCceEEeccccccCCCCccccccchhh
Confidence            9999999999 99999   9999999999999999999988 2   333346899999999999765444666666554

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.74  E-value=2.3e-17  Score=145.50  Aligned_cols=166  Identities=17%  Similarity=0.196  Sum_probs=134.5

Q ss_pred             CCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccc
Q psy5413          95 DVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGR  171 (285)
Q Consensus        95 ~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g  171 (285)
                      ..|+  .+|....||+.|+++.|.+.++.++||..|+..++.+++ ++|+.|++.+..|+.+.... ...      ..+|
T Consensus        51 ~~YsR~~nPT~~~le~~la~LEg~~~a~~~sSGmaAi~~~~l~l~-~~gd~vv~~~~~yg~t~~~~~~~~------~~~g  123 (394)
T d1e5ea_          51 YIYTRLGNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTIL-KAGDHLISDECLYGCTHALFEHAL------TKFG  123 (394)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHH------HHTT
T ss_pred             ceecCCCCHHHHHHHHHHHHHhCCcceeeeccchHHHHHHHHhhc-ccccccccccceeehhhHhHHHHh------hccc
Confidence            4454  689999999999999999999999999999999998877 69999999887765554321 111      3457


Q ss_pred             eeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH-cCCeEEEeCccCC-
Q psy5413         172 VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE-HNIPVHMDGARLP-  249 (285)
Q Consensus       172 ~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~-~gi~li~Dea~~~-  249 (285)
                      ..+..+...     |+++++++|++       ++++|++|.|.||+ ..+.+   ++++++.+++ +|+++++|...++ 
T Consensus       124 i~~~~~d~~-----d~~~~~~~i~~-------~t~lv~~Etp~NP~-l~v~D---i~~~~~~~~~~~g~~vvvDnT~atP  187 (394)
T d1e5ea_         124 IQVDFINTA-----IPGEVKKHMKP-------NTKIVYFETPANPT-LKIID---MERVCKDAHSQEGVLVIADNTFCSP  187 (394)
T ss_dssp             CEEEEECTT-----STTHHHHHCCT-------TEEEEEEESSCTTT-CCCCC---HHHHHHHHHTSTTCEEEEECTTTCT
T ss_pred             eeeeccCCC-----CHHHHHHhhcc-------cccEEEEeccCCcc-eeeeh---hhhhhhccccccCeEEEecCcccCc
Confidence            777776653     67889999988       89999999999999 99999   9989886665 6899999999873 


Q ss_pred             --hhhhcccCCeEEEecccccCc---ceeEEeecCcccc
Q psy5413         250 --LAEVCASVDTVMFCLSKGLGA---PVGSILAGPEEFI  283 (285)
Q Consensus       250 --~~~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i  283 (285)
                        ...+..++|+++.|.+|+++|   .++|+++++++.+
T Consensus       188 ~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~  226 (394)
T d1e5ea_         188 MITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLL  226 (394)
T ss_dssp             TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHH
T ss_pred             ccCCchhcCCCEEEechhhhcCCCcccccccccchhhHH
Confidence              234556899999999999999   6788887776543

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.72  E-value=2.4e-17  Score=145.99  Aligned_cols=180  Identities=16%  Similarity=0.111  Sum_probs=137.2

Q ss_pred             cHHHHHHHHhcccCCC-CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc
Q psy5413          80 TMEMKNYMFNCEVGDD-VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG  158 (285)
Q Consensus        80 ~~~v~~a~~~~~~~~~-~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~  158 (285)
                      ..+-.+++.+.+.... .+...+...++|+.+++++|.+.++.++|||.|+.++++++-.++||+|+++..++..+..+.
T Consensus        12 ~~~~~~~~~~~l~~g~~~~~~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~~~ai   91 (384)
T d1b9ha_          12 DDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAA   91 (384)
T ss_dssp             CHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEeccccccccccc
Confidence            3445666666665443 345678899999999999999999999999999999999874478999999988876654432


Q ss_pred             ccccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc
Q psy5413         159 GASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH  237 (285)
Q Consensus       159 ~~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~  237 (285)
                      .         ..|.+++.+... .++.+|++.+++.+.+       +|++|++.+..    |...+   +.++.++|+++
T Consensus        92 ~---------~~g~~p~~~d~~~~~~~~d~~~~~~~i~~-------~tk~i~~~~~~----g~~~d---~~~i~~~~~~~  148 (384)
T d1b9ha_          92 Q---------RLGAVTVPVDVDAATYNLDPEAVAAAVTP-------RTKVIMPVHMA----GLMAD---MDALAKISADT  148 (384)
T ss_dssp             H---------HTTCEEEEECBCTTTCCBCHHHHHHHCCT-------TEEEECCBCGG----GCCCC---HHHHHHHHHHH
T ss_pred             c---------ccccccccccccccccccchhhhcccccc-------ccccccccccc----ccccc---cccchhhhhhh
Confidence            2         237777777754 3567999999999988       89999887766    78888   99999999999


Q ss_pred             CCeEEEeCccCC-hh----hhcccCCeE--EEecccccCcceeEEeecC-ccc
Q psy5413         238 NIPVHMDGARLP-LA----EVCASVDTV--MFCLSKGLGAPVGSILAGP-EEF  282 (285)
Q Consensus       238 gi~li~Dea~~~-~~----~~~~~~dv~--~~s~sK~l~~p~gg~~~~~-~~~  282 (285)
                      |+++|.|.+|+. ..    ......|+.  .++.+|.++...||+++++ +++
T Consensus       149 ~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~~K~i~~g~GG~i~t~~~~~  201 (384)
T d1b9ha_         149 GVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDGET  201 (384)
T ss_dssp             TCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTTCH
T ss_pred             hhhhhhhhceecccccCCEecCcccccceecccccccccccccchhhhhhHHH
Confidence            999999999871 11    112233444  5666899887778777654 443

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.72  E-value=3.7e-17  Score=146.05  Aligned_cols=202  Identities=13%  Similarity=0.013  Sum_probs=135.6

Q ss_pred             eeeeeccCC---cCC---CcHHHHHHHHhcccC---CCCccCChhHHHHHHHHHhHcCC--------CcE--EEcCChHH
Q psy5413          67 RTVDIRSDT---ISK---PTMEMKNYMFNCEVG---DDVYLEDPTCKELQEKAAKLAGK--------EAA--IFVPSGTM  127 (285)
Q Consensus        67 ~~~~~~~~~---~~~---~~~~v~~a~~~~~~~---~~~y~~~~~~~~l~~~la~~~g~--------~~~--~~~~~Gs~  127 (285)
                      ..|+|+.+.   ..+   ..|.|.++......+   ...|.+..+..+|++.+++++..        +..  +.+.+++.
T Consensus        31 ~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (412)
T d1ajsa_          31 RKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTG  110 (412)
T ss_dssp             TCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred             CcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhh
Confidence            347887772   222   346788875543332   34688888899999999998622        222  45556666


Q ss_pred             HHHHHHHHc------cccCCCeEEecCCcceeeecccccccccccccccceeeeeee---cCCCCCCCHHHHHHHhcccc
Q psy5413         128 GNLIAIMTH------CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT---NQKDGTFDLDEMEAKFSTAD  198 (285)
Q Consensus       128 a~~~al~~~------~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~d~~~l~~~i~~~~  198 (285)
                      +...+..++      ...+||+|+++++++........         ..|.+.+.++   ....+..|++.+++.+..  
T Consensus       111 ~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~---------~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~--  179 (412)
T d1ajsa_         111 ALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFT---------TAGFKDIRSYRYWDTEKRGLDLQGFLSDLEN--  179 (412)
T ss_dssp             HHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHH---------HTTCSCEEEEECEETTTTEECHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHH---------HcCCeEEEeecccccccccccHHHHHHHHHh--
Confidence            655554442      12589999999988754433222         3365544433   223445788888777654  


Q ss_pred             cccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------------hhccc--CCeEEEec
Q psy5413         199 NIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------------EVCAS--VDTVMFCL  264 (285)
Q Consensus       199 ~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------------~~~~~--~dv~~~s~  264 (285)
                        ..++++++++++|+||| |.+++.+++++|+++|++||+++|.||+|..+.            .....  ..+++.++
T Consensus       180 --~~~~~~~il~~~P~NPT-G~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~  256 (412)
T d1ajsa_         180 --APEFSIFVLHACAHNPT-GTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSF  256 (412)
T ss_dssp             --SCTTCEEEEESSSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEEC
T ss_pred             --ccCCcEEEEecCCCCCc-CCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccc
Confidence              23378999999999999 999999999999999999999999999987221            11122  23558899


Q ss_pred             ccccCc--ceeEEeecCccc
Q psy5413         265 SKGLGA--PVGSILAGPEEF  282 (285)
Q Consensus       265 sK~l~~--p~gg~~~~~~~~  282 (285)
                      ||.++.  .+.|+++...+.
T Consensus       257 sk~~~~~G~R~G~~~~~~~~  276 (412)
T d1ajsa_         257 SKNFGLYNERVGNLTVVAKE  276 (412)
T ss_dssp             TTTSCCGGGCEEEEEEECSS
T ss_pred             cccccCCCCCccccccchhH
Confidence            998776  566777665443

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.71  E-value=9.7e-18  Score=152.00  Aligned_cols=173  Identities=13%  Similarity=0.120  Sum_probs=117.1

Q ss_pred             CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHH-HHHHHHccccCCCeEEecCCcceeeeccccccccccccccccee
Q psy5413          95 DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGN-LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVL  173 (285)
Q Consensus        95 ~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~-~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~  173 (285)
                      ..+.+...+.++|+.+|+++|.+.++|+.|||++. .+++.+++ ++||+||++...|.++...+...      ...+..
T Consensus        60 ~l~~~~~~i~eae~~~A~~~ga~~a~f~~~Gtt~~n~a~i~a~~-~~gd~Vi~~~~~H~Sv~~~~~~l------~~~~~~  132 (462)
T d1c4ka2          60 DLLIHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALV-SNGDLVLFDRNNHKSVYNSALAM------AGGRPV  132 (462)
T ss_dssp             BTTTTBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHTTT------TCCEEE
T ss_pred             CccCCCHHHHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHHhc-CCCCeEEecccchHHHHHHHHHH------hcCCce
Confidence            34555667999999999999999999998887655 55566655 79999999999998876533332      223444


Q ss_pred             eeeeecCCCC--------CCCHHHHHHHhccc--ccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEE
Q psy5413         174 MRGVTNQKDG--------TFDLDEMEAKFSTA--DNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHM  243 (285)
Q Consensus       174 ~~~~~~~~~~--------~~d~~~l~~~i~~~--~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~  243 (285)
                      +...+.++.+        .++.+.+++.+.+.  ......++..+++...+|.. |.+.|   +++|+++|++||++|++
T Consensus       133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~-G~~~d---l~~I~~ia~~~g~~l~v  208 (462)
T d1c4ka2         133 YLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYD-GTIYN---AHEVVKRIGHLCDYIEF  208 (462)
T ss_dssp             EECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTT-SEEEC---HHHHHHHHGGGBSEEEE
T ss_pred             eeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeec-cchhh---HHHHHHHHHHcCCEEEE
Confidence            4444443332        23444444433221  01112245556666655666 99999   99999999999999999


Q ss_pred             eCccCCh-h-----h-----------hcccCCeEEEecccccCcceeEEeec
Q psy5413         244 DGARLPL-A-----E-----------VCASVDTVMFCLSKGLGAPVGSILAG  278 (285)
Q Consensus       244 Dea~~~~-~-----~-----------~~~~~dv~~~s~sK~l~~p~gg~~~~  278 (285)
                      |++|+.- .     .           ...++|++++|+||+++++.+|.++.
T Consensus       209 D~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~  260 (462)
T d1c4ka2         209 DSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIH  260 (462)
T ss_dssp             ECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEE
T ss_pred             echhhccccccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEE
Confidence            9998711 0     0           01245899999999999966655543

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1.3e-16  Score=143.86  Aligned_cols=198  Identities=17%  Similarity=0.032  Sum_probs=139.9

Q ss_pred             eeeccCCcCCCcHHHHHHHHhcccCC-CCccCChhHHHHHHH----HHhHcCCCc-------EEEcCChHHHHHHHHHHc
Q psy5413          69 VDIRSDTISKPTMEMKNYMFNCEVGD-DVYLEDPTCKELQEK----AAKLAGKEA-------AIFVPSGTMGNLIAIMTH  136 (285)
Q Consensus        69 ~~~~~~~~~~~~~~v~~a~~~~~~~~-~~y~~~~~~~~l~~~----la~~~g~~~-------~~~~~~Gs~a~~~al~~~  136 (285)
                      .++.+...+..+|++.+.+.+..... .-+...|...++|+.    +++++|.+.       ..++.+||+|++.++.++
T Consensus        56 ~n~asf~~t~~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aa  135 (450)
T d1pmma_          56 QNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAM  135 (450)
T ss_dssp             GBCSCCSCCCCCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHH
T ss_pred             ccccccccCCCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHH
Confidence            34555444556788888887765432 223344666666654    566667532       589999999999999887


Q ss_pred             ccc----------C-CCeEEecCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCc
Q psy5413         137 CDR----------R-DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCAS  204 (285)
Q Consensus       137 ~~~----------~-g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~  204 (285)
                      ..+          . ...++++...|.+..++..+         .|++++.++..+ ++.+|+++|+++|++       +
T Consensus       136 r~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~---------~gi~~~~v~~~~~~~~~d~~~L~~~i~~-------~  199 (450)
T d1pmma_         136 KWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARY---------WDVELREIPMRPGQLFMDPKRMIEACDE-------N  199 (450)
T ss_dssp             HHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHH---------TTCEEEECCCBTTBCSCCHHHHHHHCCT-------T
T ss_pred             HHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHH---------cCCCceEeeecCCCCcCcHHHHHHHhhh-------C
Confidence            531          1 12467777889887764444         488888888754 588999999999988       8


Q ss_pred             eEEEEEecccCCCCeeeCCHHHHHHHHH---HHHHcCCeEEEeCccCCh-hhh----------cccCCeEEEecccccCc
Q psy5413         205 TSLVCVENTHNYCGGTVLPMQWLRELKA---RCQEHNIPVHMDGARLPL-AEV----------CASVDTVMFCLSKGLGA  270 (285)
Q Consensus       205 ~~~v~i~~~~n~~gG~~~~~~~l~~i~~---la~~~gi~li~Dea~~~~-~~~----------~~~~dv~~~s~sK~l~~  270 (285)
                      |.+|++...++.+ |.+.|.+.+.+|++   +|+++|+|+|+|+|+++. ..+          .+++|.+++++|||+++
T Consensus       200 t~~Vv~t~gtt~t-G~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~  278 (450)
T d1pmma_         200 TIGVVPTFGVTYT-GNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLA  278 (450)
T ss_dssp             EEEEECBBSCTTT-CBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCC
T ss_pred             ceEEEeeeeeccC-CCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcccceeEeecChhhccCC
Confidence            9999999999888 99999555544443   357799999999998732 111          24689999999999888


Q ss_pred             cee--EEeecCcccc
Q psy5413         271 PVG--SILAGPEEFI  283 (285)
Q Consensus       271 p~g--g~~~~~~~~i  283 (285)
                      |.|  ++++.+++.+
T Consensus       279 p~g~g~l~~r~~~~~  293 (450)
T d1pmma_         279 PLGCGWVIWRDEEAL  293 (450)
T ss_dssp             CSSCEEEEESSGGGS
T ss_pred             CCCeeEEEecChhhh
Confidence            544  4555555543

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=2.9e-17  Score=143.81  Aligned_cols=169  Identities=20%  Similarity=0.179  Sum_probs=129.1

Q ss_pred             CCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCC-eEEecCCcceeeecccccccccccccccc
Q psy5413          95 DVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDS-EIIVGDCSHIMLWEQGGASQTSVYSQIGR  171 (285)
Q Consensus        95 ~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~-~vi~~~~~h~~~~~~~~~~~~~~~~~~~g  171 (285)
                      ..| +++...+|++.+++++|.+  .+++++|+++++..++.+++ .+|| .|+++++++.......         ...|
T Consensus        51 ~rY-Pd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~-~pgd~~Vl~~~P~y~~~~~~~---------~~~g  119 (354)
T d1fg7a_          51 NRY-PECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC-EPGKDAILYCPPTYGMYSVSA---------ETIG  119 (354)
T ss_dssp             TSC-CCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC-CTTTCEEEECSSSCTHHHHHH---------HHHT
T ss_pred             hcC-CCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhh-ccccccccccccccccchhhh---------hccC
Confidence            345 3555689999999999875  56888889999999999987 5888 4777777765443322         3448


Q ss_pred             eeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-
Q psy5413         172 VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-  250 (285)
Q Consensus       172 ~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-  250 (285)
                      .+++.++..+++.+|+++++.++ +       ++++|++++|+||| |.+++.+.++.+.+.++ ++.++++||++..+ 
T Consensus       120 ~~v~~~~~~~~~~~d~~~l~~~~-~-------~~~~v~~~~pnNPt-G~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~  189 (354)
T d1fg7a_         120 VECRTVPTLDNWQLDLQGISDKL-D-------GVKVVYVCSPNNPT-GQLINPQDFRTLLELTR-GKAIVVADEAYIEFC  189 (354)
T ss_dssp             CEEEECCCCTTSCCCHHHHHTSC-T-------TEEEEEEESSCTTT-CCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGS
T ss_pred             ceeeccccccccccchhhhhhcc-c-------ccceeeccCCCccc-eeEeeeccccccccccc-ccccccccccchhhc
Confidence            88888888788889999998776 3       68999999999999 89999999999988765 67778888886621 


Q ss_pred             -----hhhc-ccCC-eEEEecccccCc--ceeEEeecCccccc
Q psy5413         251 -----AEVC-ASVD-TVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       251 -----~~~~-~~~d-v~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                           .... ..-. +++.|+||.++.  .+.|++++++++++
T Consensus       190 ~~~~~~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~  232 (354)
T d1fg7a_         190 PQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVIN  232 (354)
T ss_dssp             GGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHH
T ss_pred             cccccchhhcccccceEEeCCccccCCCccccccccccchhhh
Confidence                 1111 2222 448999998764  78889999888764

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.7e-17  Score=144.59  Aligned_cols=188  Identities=15%  Similarity=0.119  Sum_probs=139.7

Q ss_pred             cCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc---EEEcCChHHHHHHHHHHccccCCCeEEecCCcce
Q psy5413          76 ISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA---AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHI  152 (285)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~---~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~  152 (285)
                      |...+++|++++.....+|..-.......++++.+++++|.+.   ++|+.|||+++++++..++ .+|+++++....|.
T Consensus        27 P~~~~~~Vl~am~~~~i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~-~~~~~~~~~~~~~~  105 (388)
T d1h0ca_          27 PSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVL-EPGDSFLVGANGIW  105 (388)
T ss_dssp             CCCCCHHHHHHHTCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC-CSSCCEEECBSSHH
T ss_pred             CCCCCHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhh-ccCCceeeecccce
Confidence            3556889999998766665533344668899999999999753   5788899999999999987 57888877665554


Q ss_pred             eeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHH
Q psy5413         153 MLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKA  232 (285)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~  232 (285)
                      .... ....      ...+.....+...+....|.+++++.+...      ++++|.+.+.+|.+ |.+.|   +++|++
T Consensus       106 ~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~n~t-G~i~p---i~~i~~  168 (388)
T d1h0ca_         106 GQRA-VDIG------ERIGARVHPMTKDPGGHYTLQEVEEGLAQH------KPVLLFLTHGESST-GVLQP---LDGFGE  168 (388)
T ss_dssp             HHHH-HHHH------HHHC--CBCCBCCTTCCCCHHHHHHHHHHH------CCSEEEEESEETTT-TEECC---CTTHHH
T ss_pred             eeee-cccc------ccccccccccccCCccccchHHHHHHhccC------CcceEEEeeeeecc-ccccC---HHHHHH
Confidence            3221 1111      223555556665556678888888877653      78999999999998 99999   999999


Q ss_pred             HHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCccee-EEeecCcc
Q psy5413         233 RCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPVG-SILAGPEE  281 (285)
Q Consensus       233 la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~g-g~~~~~~~  281 (285)
                      +|++||+++++|++++ +   +.....++|+++.+.+||+++|.| +++..+++
T Consensus       169 ~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~  222 (388)
T d1h0ca_         169 LCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDK  222 (388)
T ss_dssp             HHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHH
T ss_pred             HhhcccccceeccccccccccccccccccceecccccccccCCCceEEEeecHH
Confidence            9999999999999988 2   222345889999999999999544 55555443

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.70  E-value=7e-16  Score=131.04  Aligned_cols=203  Identities=22%  Similarity=0.294  Sum_probs=137.0

Q ss_pred             eeeccCCcCCCcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCCCeEE
Q psy5413          69 VDIRSDTISKPTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRDSEII  145 (285)
Q Consensus        69 ~~~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g~~vi  145 (285)
                      ++|.|+|..++||+|++|+.+...+ ...|+.++...++|+++++++|.+.  ++|++|||+|++.++..+. +++++++
T Consensus         2 ~~f~nd~~~g~~P~v~eAl~~~~~~~~~~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~-~~~~~~~   80 (340)
T d1svva_           2 YSFVNDYSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL-RPWEAVI   80 (340)
T ss_dssp             EECSCSCSSCCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC-CTTEEEE
T ss_pred             CCcccCCCCCCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHh-hhccccc
Confidence            5789999999999999999987665 3568888989999999999999864  6899999999999999877 5787777


Q ss_pred             ecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHH
Q psy5413         146 VGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQ  225 (285)
Q Consensus       146 ~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~  225 (285)
                      +....|.+........       ..+........ .....+.+...++.......+..++..+++..+++.  |.+.+.+
T Consensus        81 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  150 (340)
T d1svva_          81 ATQLGHISTHETGAIE-------ATGHKVVTAPC-PDGKLRVADIESALHENRSEHMVIPKLVYISNTTEV--GTQYTKQ  150 (340)
T ss_dssp             EETTSHHHHSSTTHHH-------HTTCCEEEECC-TTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTT--SCCCCHH
T ss_pred             cccccceeeeeccccc-------ccceeeeeccc-ccccccchhHHHHhhhhhcccCCcceeeeecccccc--cccccHH
Confidence            7766665544322222       11222223222 222234444444443322223334445555555554  7888888


Q ss_pred             HHHHHHHHHHHcCCeEEEeCccCC-----------hhhhcccCCeEEEecccccCcceeEEeecCccc
Q psy5413         226 WLRELKARCQEHNIPVHMDGARLP-----------LAEVCASVDTVMFCLSKGLGAPVGSILAGPEEF  282 (285)
Q Consensus       226 ~l~~i~~la~~~gi~li~Dea~~~-----------~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~  282 (285)
                      ++..+.+.|+++|.++++|+++..           ........++...+..|..+++.++........
T Consensus       151 ~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (340)
T d1svva_         151 ELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDAL  218 (340)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGG
T ss_pred             HhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccchhh
Confidence            999999999999999999999761           111112345567777777666666666554443

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.70  E-value=1e-16  Score=143.14  Aligned_cols=202  Identities=14%  Similarity=-0.026  Sum_probs=136.4

Q ss_pred             eeeeccCC---cCC---CcHHHHHHHHhccc---CCCCccCChhHHHHHHHHHhHcCCC--------cE--EEcCChHHH
Q psy5413          68 TVDIRSDT---ISK---PTMEMKNYMFNCEV---GDDVYLEDPTCKELQEKAAKLAGKE--------AA--IFVPSGTMG  128 (285)
Q Consensus        68 ~~~~~~~~---~~~---~~~~v~~a~~~~~~---~~~~y~~~~~~~~l~~~la~~~g~~--------~~--~~~~~Gs~a  128 (285)
                      .|+|+.+.   ..+   ..+.|++|.+....   ....|.+..+..+|++.+++++..+        ..  ..+.+|..+
T Consensus        31 kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (412)
T d1yaaa_          31 KVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGA  110 (412)
T ss_dssp             CEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred             cEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhH
Confidence            47777652   222   34678877554332   2346888888999999999985221        12  222334444


Q ss_pred             HHHHHHHc-cccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCce
Q psy5413         129 NLIAIMTH-CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCAST  205 (285)
Q Consensus       129 ~~~al~~~-~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~  205 (285)
                      ...++... ...+||.|+++++++.......         ...|.+++.++..  ..+..+.+.+++.+..    ..+++
T Consensus       111 ~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~---------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  177 (412)
T d1yaaa_         111 LHISAKFFSKFFPDKLVYLSKPTWANHMAIF---------ENQGLKTATYPYWANETKSLDLNGFLNAIQK----APEGS  177 (412)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEESCCTTHHHHH---------HTTTCCEEEEECEETTTTEECHHHHHHHHHH----SCTTC
T ss_pred             HHHHHHHHhccCCCCEEecccccCchhHHHH---------HHcCCceecccccccccccccchhhhccccc----CCCce
Confidence            43333222 2358999999988765443322         2347777777753  3445788888888865    23367


Q ss_pred             EEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh---------------hcccCC--eEEEeccccc
Q psy5413         206 SLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE---------------VCASVD--TVMFCLSKGL  268 (285)
Q Consensus       206 ~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~---------------~~~~~d--v~~~s~sK~l  268 (285)
                      +++++++|+||| |.+++.+++++|+++|+++++++|.||+|..+..               .....+  +++.|+||.+
T Consensus       178 ~~i~i~~P~NPT-G~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~  256 (412)
T d1yaaa_         178 IFVLHSCAHNPT-GLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNA  256 (412)
T ss_dssp             EEEEECSSCTTT-CCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTS
T ss_pred             EEEEecCCCCCc-cccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCcc
Confidence            899999999999 9999999999999999999999999999872211               111222  4589999987


Q ss_pred             Cc--ceeEEeecCcccc
Q psy5413         269 GA--PVGSILAGPEEFI  283 (285)
Q Consensus       269 ~~--p~gg~~~~~~~~i  283 (285)
                      +.  .+.|+++..++++
T Consensus       257 ~~~G~RiG~~~~~~~~~  273 (412)
T d1yaaa_         257 GMYGERVGCFHLALTKQ  273 (412)
T ss_dssp             CCGGGCEEEEEEECCSC
T ss_pred             ccCcCceEEEEEchhhh
Confidence            65  7888887776554

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=1.2e-16  Score=140.66  Aligned_cols=159  Identities=14%  Similarity=0.119  Sum_probs=123.8

Q ss_pred             CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413          99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV  177 (285)
Q Consensus        99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~  177 (285)
                      .+|....||+.|+++.|.+.++.++||..|+..++ .++ ++|++|++.+..++.+.... ...      ..+|.++..+
T Consensus        53 gnPT~~~lE~~la~LE~~~~a~~~sSGmaAi~~~l-~~l-~~gd~iv~~~~~yg~t~~~~~~~l------~~~gi~~~~~  124 (393)
T d1n8pa_          53 QNPNRENLERAVAALENAQYGLAFSSGSATTATIL-QSL-PQGSHAVSIGDVYGGTHRYFTKVA------NAHGVETSFT  124 (393)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHH-HTS-CSSCEEEEESSCCHHHHHHHHHTS------TTTCSCCEEE
T ss_pred             CChHHHHHHHHHHHHhCCceEEEecCchhHHHhhh-hcc-cCCCeeeeeeeecccchhhhhhhh------hcccceeEEe
Confidence            67999999999999999999999999999986554 545 58898888765544433211 111      3446655444


Q ss_pred             ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHH----HcCCeEEEeCccCCh---
Q psy5413         178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQ----EHNIPVHMDGARLPL---  250 (285)
Q Consensus       178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~----~~gi~li~Dea~~~~---  250 (285)
                      ..      +.+++++++++       ++++|++|.|.||+ ..+.|   |++|+++||    ++|+++|+|...+++   
T Consensus       125 ~~------~~~~~~~~i~~-------~t~lv~~EspsNP~-l~v~D---i~~ia~~a~~~~~~~g~~lvVDnT~atP~~~  187 (393)
T d1n8pa_         125 ND------LLNDLPQLIKE-------NTKLVWIETPTNPT-LKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS  187 (393)
T ss_dssp             SS------HHHHHHHHSCS-------SEEEEEECSSCTTT-CCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC
T ss_pred             ec------chHHHHHHhhh-------hcceeEecCcchhh-hhccc---hhhhhhhhhhhcccCCceEEEecCccCcccC
Confidence            32      56789999988       89999999999999 99999   999999999    789999999998833   


Q ss_pred             hhhcccCCeEEEecccccCc---ceeEEeec-Cccc
Q psy5413         251 AEVCASVDTVMFCLSKGLGA---PVGSILAG-PEEF  282 (285)
Q Consensus       251 ~~~~~~~dv~~~s~sK~l~~---p~gg~~~~-~~~~  282 (285)
                      ..+.-++|+++.|++|+++|   .+||+++. ++++
T Consensus       188 ~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~  223 (393)
T d1n8pa_         188 NPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPL  223 (393)
T ss_dssp             CGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHH
T ss_pred             CchhhCCCEEEEccccccCCCCccccceeeecchhH
Confidence            23456899999999999999   67777764 4443

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.70  E-value=8.7e-17  Score=140.62  Aligned_cols=188  Identities=9%  Similarity=0.047  Sum_probs=124.9

Q ss_pred             CCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc----EEEcCChHHHHHHHHHHccccCCCeEEe-cCCcc
Q psy5413          77 SKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA----AIFVPSGTMGNLIAIMTHCDRRDSEIIV-GDCSH  151 (285)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~----~~~~~~Gs~a~~~al~~~~~~~g~~vi~-~~~~h  151 (285)
                      ...++.|++|+.+...++..-......+++++.+++++|.+.    .+++.|||++++.++..+.. +++.+++ ....+
T Consensus         9 ~~~~~~V~~A~~~~~~~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~-~~~~~~~~~~~~~   87 (361)
T d1m32a_           9 LTTSRTVKEAMLFDSCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALG-PQDKVLIVSNGAY   87 (361)
T ss_dssp             CCCCHHHHHTTCCCCCTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCC-TTCCEEEEESSHH
T ss_pred             CCCCHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhh-hccccceeeehhh
Confidence            445778888876554433322223558899999999999853    36788999999999999875 5554444 33332


Q ss_pred             eeeecccccccccccccccceeeeeeecCCCCCC--CHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHH
Q psy5413         152 IMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTF--DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRE  229 (285)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~  229 (285)
                      ......  ..      ...+.....+...+....  +.+.....+.+       ++++|.+++.++.+ |.+.|   +++
T Consensus        88 ~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~t-G~~~~---i~~  148 (361)
T d1m32a_          88 GARMVE--MA------GLMGIAHHAYDCGEVARPDVQAIDAILNADP-------TISHIAMVHSETTT-GMLNP---IDE  148 (361)
T ss_dssp             HHHHHH--HH------HHHTCCEEEEECCTTSCCCHHHHHHHHHHCT-------TCCEEEEESEETTT-TEECC---HHH
T ss_pred             hhhHHH--Hh------hhhhcccccccccccCCccchhhHHHHHhcc-------CccceEEEeeeccc-ccchh---hhh
Confidence            211110  01      111222233332222222  33333344444       89999999999988 99999   999


Q ss_pred             HHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCcce-eEEeecCccccc
Q psy5413         230 LKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPV-GSILAGPEEFIQ  284 (285)
Q Consensus       230 i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~-gg~~~~~~~~i~  284 (285)
                      |+++|++||+++++|.+|+ +   +.....++|+++++.+||+++|. .|++..+++.++
T Consensus       149 i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~  208 (361)
T d1m32a_         149 VGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLA  208 (361)
T ss_dssp             HHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHT
T ss_pred             hhhhhcccceeeEeecccccCcccccccccccceEEeeecccccCCCCceEEEechhhhh
Confidence            9999999999999999998 3   22234588999999999998854 466666665543

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=4.9e-17  Score=144.55  Aligned_cols=200  Identities=12%  Similarity=-0.019  Sum_probs=138.6

Q ss_pred             eeeccCCc---CC---CcHHHHHHHHhccc---CCCCccCChhHHHHHHHHHhHcCCC--------cEEEcCChHHH---
Q psy5413          69 VDIRSDTI---SK---PTMEMKNYMFNCEV---GDDVYLEDPTCKELQEKAAKLAGKE--------AAIFVPSGTMG---  128 (285)
Q Consensus        69 ~~~~~~~~---~~---~~~~v~~a~~~~~~---~~~~y~~~~~~~~l~~~la~~~g~~--------~~~~~~~Gs~a---  128 (285)
                      ++|+.+.+   .+   ..+.|.+|......   +...|++..+..+||+.+++++...        .++.+.+++.+   
T Consensus        29 InL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~  108 (397)
T d3tata_          29 VNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGAL  108 (397)
T ss_dssp             EECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHH
T ss_pred             EEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHH
Confidence            77776632   22   24678888654332   2456888888999999999987432        23444444433   


Q ss_pred             -HHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCce
Q psy5413         129 -NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCAST  205 (285)
Q Consensus       129 -~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~  205 (285)
                       +...+...+ .+||+|+++++++.......         ...|.+++.++...+  +..|.+++.+.+..    ...++
T Consensus       109 ~l~~~~~~~~-~pgd~Vlv~~P~y~~y~~~~---------~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~  174 (397)
T d3tata_         109 KVGADFLKRY-FPESGVWVSDPTWENHVAIF---------AGAGFEVSTYPWYDEATNGVRFNDLLATLKT----LPARS  174 (397)
T ss_dssp             HHHHHHHHHH-CSSCCCEECSSCCTTHHHHH---------HTTTCCCEECCCCCTTTSSCCHHHHHHHHTT----CCSSC
T ss_pred             HHHHHHhhhc-CCCCcceecccCccccHHHH---------HHcCCEEEEEecchhhccccchHHHHHHhhh----ccccc
Confidence             334444444 58999999998876554322         244888888886443  45788888887764    23378


Q ss_pred             EEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------h-hccc-CC-eEEEecccccCc--
Q psy5413         206 SLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------E-VCAS-VD-TVMFCLSKGLGA--  270 (285)
Q Consensus       206 ~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~-~~~~-~d-v~~~s~sK~l~~--  270 (285)
                      +++++.+|+||| |.+++.+++++|+++|++||+++|.||+|..+.          . .... -. +++.|+||.++.  
T Consensus       175 ~~~~~~~p~NPT-G~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G  253 (397)
T d3tata_         175 IVLLHPCCHNPT-GADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYG  253 (397)
T ss_dssp             CCEECSSSCSSS-CCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTT
T ss_pred             EEEEecCCCCCC-CeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccC
Confidence            899999999999 999999999999999999999999999987221          0 1112 22 448999997655  


Q ss_pred             ceeEEeecCcccc
Q psy5413         271 PVGSILAGPEEFI  283 (285)
Q Consensus       271 p~gg~~~~~~~~i  283 (285)
                      .+.|+++....++
T Consensus       254 ~RiG~~~~~~~~~  266 (397)
T d3tata_         254 ERVGGLSVMCEDA  266 (397)
T ss_dssp             TCCBCCEEECSST
T ss_pred             ccccccccchhHH
Confidence            6777777655443

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.69  E-value=3.3e-16  Score=137.99  Aligned_cols=161  Identities=14%  Similarity=0.144  Sum_probs=120.5

Q ss_pred             ChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeec
Q psy5413         100 DPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN  179 (285)
Q Consensus       100 ~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~  179 (285)
                      .+...++|+.+++++|.+.+++++|||.|+.+|++++-.++||+|+++..++..+.....         ..|..++.+..
T Consensus        20 G~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~~~---------~~g~~pv~~Di   90 (374)
T d1o69a_          20 GEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPIC---------YLKAKPVFIDC   90 (374)
T ss_dssp             THHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHH---------HTTCEEEEECB
T ss_pred             CHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhHHHHh---------hccceeEeccc
Confidence            688999999999999999999999999999999999855789999999887765543222         33888888887


Q ss_pred             CCCCCCCHHHHH---HHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC-hh----
Q psy5413         180 QKDGTFDLDEME---AKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP-LA----  251 (285)
Q Consensus       180 ~~~~~~d~~~l~---~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~-~~----  251 (285)
                      +++........+   ..+.+       ++++|++.+..    |...+   +.++.++|+++|++||.|.+|+. ..    
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~-------~~~aii~~~~~----G~~~d---~~~i~~~~~~~~i~vIED~a~a~g~~~~~~  156 (374)
T d1o69a_          91 DETYNIDVDLLKLAIKECEK-------KPKALILTHLY----GNAAK---MDEIVEICKENDIVLIEDAAEALGSFYKNK  156 (374)
T ss_dssp             CTTSSBCHHHHHHHHHHCSS-------CCCEEEEECGG----GCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE
T ss_pred             ccccccccccccccchhccc-------ccccccccccc----cchhh---hHHHHHHhhccCcchhhhhhhhhcceECCe
Confidence            655433333333   34444       78999998887    88899   99999999999999999999882 11    


Q ss_pred             hhcccCCeEEEecc--cccCcceeEEeec-Ccccc
Q psy5413         252 EVCASVDTVMFCLS--KGLGAPVGSILAG-PEEFI  283 (285)
Q Consensus       252 ~~~~~~dv~~~s~s--K~l~~p~gg~~~~-~~~~i  283 (285)
                      .+....|+.++||+  |.++..-||++++ ++++.
T Consensus       157 ~~G~~gd~~~fSf~~~K~l~tgeGG~i~tnn~~~~  191 (374)
T d1o69a_         157 ALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKI  191 (374)
T ss_dssp             ETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHH
T ss_pred             ecCCCCceEEEeccCccccccccceeehhhhHHHH
Confidence            12234577666665  8887755666655 44443

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.69  E-value=1.7e-16  Score=138.19  Aligned_cols=191  Identities=15%  Similarity=0.139  Sum_probs=139.6

Q ss_pred             ccCCcCCCcHHHHHHHHhcccC--------CCCccCChhHHHHH----HHHHhHcCCCcE-EEcCChHHHHHHHHHHccc
Q psy5413          72 RSDTISKPTMEMKNYMFNCEVG--------DDVYLEDPTCKELQ----EKAAKLAGKEAA-IFVPSGTMGNLIAIMTHCD  138 (285)
Q Consensus        72 ~~~~~~~~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~----~~la~~~g~~~~-~~~~~Gs~a~~~al~~~~~  138 (285)
                      .++|+  .+|.|++++...+.+        ...|+..+...++|    ++..++|+++.+ +-..||+.|+.+++.+++ 
T Consensus        30 aSEN~--~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~anVqp~SGs~An~av~~all-  106 (405)
T d1kl1a_          30 ASENF--VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVL-  106 (405)
T ss_dssp             TTCCC--CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEEECCCSSHHHHHHHHHHHHC-
T ss_pred             ccCCc--CCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCcceeeccCchHHHHHHHHHhc-
Confidence            35554  489999998766643        22455556667666    444677899887 888999999999999987 


Q ss_pred             cCCCeEEecC---CcceeeecccccccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413         139 RRDSEIIVGD---CSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH  214 (285)
Q Consensus       139 ~~g~~vi~~~---~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~  214 (285)
                      +|||.|+..+   ..|.+........       ....+.+..+.+ +++.+|.+++++.+++.      ++++|++-...
T Consensus       107 ~pGD~im~l~l~~GGHlshg~~~~~~-------g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~------kPklIi~G~S~  173 (405)
T d1kl1a_         107 EHGDTVLGMNLSHGGHLTHGSPVNFS-------GVQYNFVAYGVDPETHVIDYDDVREKARLH------RPKLIVAAASA  173 (405)
T ss_dssp             CTTCEEEEECGGGTCCGGGTCTTSHH-------HHHSEEEEECBCTTTCSBCHHHHHHHHHHH------CCSEEEECCSS
T ss_pred             CCCCEEEEeecccccccccCcccccc-------ceEEEEEEeccchhcccccHHHHHHHHHhh------CcceEEecccc
Confidence            6999988754   3343321111111       123344555554 45679999999999875      78899886655


Q ss_pred             CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413         215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~  284 (285)
                      .+   ..+|   +++++++|++.|.+|++|.+|. ++.      .-.+++|+++.|.||+|.||+||+++.++++.+
T Consensus       174 y~---r~~d---~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~aDvvt~tThKtlrGPrgg~I~~~~~~~~  244 (405)
T d1kl1a_         174 YP---RIID---FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQEQFAK  244 (405)
T ss_dssp             CC---SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSCEEEEECHHHHH
T ss_pred             cc---cccC---hHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhhhhheeccccccccCCCCceEEecchhHH
Confidence            43   6777   9999999999999999999988 221      123689999999999999999999999877643

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=1.7e-16  Score=140.98  Aligned_cols=202  Identities=15%  Similarity=0.007  Sum_probs=137.9

Q ss_pred             eeeeccCCc---CC---CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcCC--------CcE--EEcCChHHHH
Q psy5413          68 TVDIRSDTI---SK---PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAGK--------EAA--IFVPSGTMGN  129 (285)
Q Consensus        68 ~~~~~~~~~---~~---~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~--------~~~--~~~~~Gs~a~  129 (285)
                      .++|+.+.+   .+   ..|.|++|+.+....  ...|.+..+..+||+.+++++..        +..  +.+.+|+.+.
T Consensus        28 kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (396)
T d2q7wa1          28 KINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGAL  107 (396)
T ss_dssp             CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHH
T ss_pred             cEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHH
Confidence            477776632   11   347888887765442  34688888899999999998632        112  4555555555


Q ss_pred             HHHHHHc-cccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceE
Q psy5413         130 LIAIMTH-CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTS  206 (285)
Q Consensus       130 ~~al~~~-~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~  206 (285)
                      ..++..+ ...+||.|+++++++.......         ...|.+++.++..  .++..+...+++....    ...+++
T Consensus       108 ~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~---------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  174 (396)
T d2q7wa1         108 RVAADFLAKNTSVKRVWVSNPSWPNHKSVF---------NSAGLEVREYAYYDAENHTLDFDALINSLNE----AQAGDV  174 (396)
T ss_dssp             HHHHHHHHHHSCCCEEEEEESCCTHHHHHH---------HHTTCEEEEEECEETTTTEECHHHHHHHHTT----CCTTCE
T ss_pred             HHHHHHHhhcccceEEEEecCCCccchHHH---------HHcCCeeEecccccccccccccchHHHHHHH----hccCcE
Confidence            4444332 2258999999988765443322         2348888877753  2334577777776654    233788


Q ss_pred             EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----------hhcc-cC-CeEEEecccccCc--c
Q psy5413         207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----------EVCA-SV-DTVMFCLSKGLGA--P  271 (285)
Q Consensus       207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----------~~~~-~~-dv~~~s~sK~l~~--p  271 (285)
                      ++++++|+||| |.+++.+++++|+++|++|++++|.||+|..+.           .... .- .+++.+++|.++.  .
T Consensus       175 ~i~~~~P~NPT-G~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~  253 (396)
T d2q7wa1         175 VLFHGCCHNPT-GIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNE  253 (396)
T ss_dssp             EEEECSSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGG
T ss_pred             EEEecCCcCCc-CeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccccccCC
Confidence            99999999999 999999999999999999999999999988221           0111 22 2448899998765  6


Q ss_pred             eeEEeecCcccc
Q psy5413         272 VGSILAGPEEFI  283 (285)
Q Consensus       272 ~gg~~~~~~~~i  283 (285)
                      +.|+++..++.+
T Consensus       254 R~G~~~~~~~~~  265 (396)
T d2q7wa1         254 RVGACTLVAADS  265 (396)
T ss_dssp             CCEEEEEECSSH
T ss_pred             CccccccchhHH
Confidence            777777765543

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=4.8e-16  Score=136.02  Aligned_cols=189  Identities=12%  Similarity=0.107  Sum_probs=135.8

Q ss_pred             ccCCcCCCcHHHHHHHHhcccC--------CCCccCChhHHHHH----HHHHhHcCCCcE-EEcCChHHHHHHHHHHccc
Q psy5413          72 RSDTISKPTMEMKNYMFNCEVG--------DDVYLEDPTCKELQ----EKAAKLAGKEAA-IFVPSGTMGNLIAIMTHCD  138 (285)
Q Consensus        72 ~~~~~~~~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~----~~la~~~g~~~~-~~~~~Gs~a~~~al~~~~~  138 (285)
                      .++|+  .+|.|++++...+.+        ...|+..+..+++|    ++..++++++.+ +...||+.|+.+++.+++ 
T Consensus        33 aSEN~--~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~anVqp~SGs~AN~av~~All-  109 (416)
T d1dfoa_          33 ASENY--TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALL-  109 (416)
T ss_dssp             TTCCC--CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC-
T ss_pred             cCccc--CCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCcceeecccCccHHHHHHHHhc-
Confidence            45555  489999998766542        22455555566655    444667899877 889999999999999987 


Q ss_pred             cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCC
Q psy5413         139 RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCG  218 (285)
Q Consensus       139 ~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~g  218 (285)
                      ++||.|+..+..|+.....+...   .+ .....+.+..+.++++.+|.+++++..++.      ++++|++-....   
T Consensus       110 ~pGD~Il~l~l~~GGHlshg~~~---~~-~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~------kPklIi~G~S~y---  176 (416)
T d1dfoa_         110 EPGDTVLGMNLAHGGHLTHGSPV---NF-SGKLYNIVPYGIDATGHIDYADLEKQAKEH------KPKMIIGGFSAY---  176 (416)
T ss_dssp             CTTCEEEEECTTTTCCGGGTCTT---SH-HHHHSEEEEECBCSSSSBCHHHHHHHHHHH------CCSEEEEECSSC---
T ss_pred             CCCCeeeeccccccccccccccc---cc-cCceEEEEecccCCccCccHHHHHHHHHHh------ccceEEeccccc---
Confidence            69999887544432221111111   00 011223444455556779999999998774      889999876554   


Q ss_pred             eeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecC
Q psy5413         219 GTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGP  279 (285)
Q Consensus       219 G~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~  279 (285)
                      ....|   +++++++|++.|.++++|.+|. ++.      ....++|+++.|.||+|.||+||+++.+
T Consensus       177 ~r~~d---~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~aDvvt~tThKtlrGPrggiI~~~  241 (416)
T d1dfoa_         177 SGVVD---WAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAK  241 (416)
T ss_dssp             CSCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTTSSEEEEESSSTTCCCSCEEEEES
T ss_pred             ccccC---HHHHHHHHHhcCceEEcchhhhhcceeccccCCcccccceeeeehhhcccCCCceEEEec
Confidence            47788   9999999999999999999988 221      2235789999999999999999999986

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=1.3e-16  Score=141.50  Aligned_cols=200  Identities=14%  Similarity=0.045  Sum_probs=137.0

Q ss_pred             eeeeccCCcC------CCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcC----C---CcEEEcCChHHHHHHH
Q psy5413          68 TVDIRSDTIS------KPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAG----K---EAAIFVPSGTMGNLIA  132 (285)
Q Consensus        68 ~~~~~~~~~~------~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g----~---~~~~~~~~Gs~a~~~a  132 (285)
                      .++++.+.+.      ...|.|.+|+++....  ...|++..+..+||+.+++++.    .   ...+.+.+|+.+...+
T Consensus        28 ~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~  107 (394)
T d2ay1a_          28 KIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQA  107 (394)
T ss_dssp             CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHH
T ss_pred             CEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHH
Confidence            4677766321      1357899988766542  3468888889999999999852    1   1236666666665444


Q ss_pred             H--HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEEE
Q psy5413         133 I--MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSLV  208 (285)
Q Consensus       133 l--~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v  208 (285)
                      +  .... .+|+.|+++++++.......         ...|.+++.++..  ..+..+.+++++....    ...+++++
T Consensus       108 ~~~~~~~-~~gd~V~~p~p~~~~y~~~~---------~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~  173 (394)
T d2ay1a_         108 LELARMA-NPDLRVFVSDPTWPNHVSIM---------NFMGLPVQTYRYFDAETRGVDFEGMKADLAA----AKKGDMVL  173 (394)
T ss_dssp             HHHHHHH-CTTCCEEEEESCCHHHHHHH---------HHHTCCEEEEECEETTTTEECHHHHHHHHHT----CCTTCEEE
T ss_pred             HHHhhhc-CCceEEEEecccccchHHHH---------HHcCCEEEEecccchhcccccchhHHHHHhh----cccCcEEE
Confidence            3  3334 58999999988765443322         2347788877753  2334566776666544    22367888


Q ss_pred             EEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------h--hcccCCeE-EEecccccCc--cee
Q psy5413         209 CVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------E--VCASVDTV-MFCLSKGLGA--PVG  273 (285)
Q Consensus       209 ~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~--~~~~~dv~-~~s~sK~l~~--p~g  273 (285)
                      ++++|+||| |.+++.+++++|+++|++|++++|.||+|..+.          .  ......++ +.+++|.++.  .+.
T Consensus       174 ~~~~p~NPT-G~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~  252 (394)
T d2ay1a_         174 LHGCCHNPT-GANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERT  252 (394)
T ss_dssp             EESSSCTTT-CCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCE
T ss_pred             EeCCCCCCC-CCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCcccc
Confidence            999999999 999999999999999999999999999987221          0  11233344 7899998765  666


Q ss_pred             EEeecCccc
Q psy5413         274 SILAGPEEF  282 (285)
Q Consensus       274 g~~~~~~~~  282 (285)
                      |+++....+
T Consensus       253 G~~~~~~~~  261 (394)
T d2ay1a_         253 GCLLALCAD  261 (394)
T ss_dssp             EEEEEECSS
T ss_pred             cchhhchhH
Confidence            777665443

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.68  E-value=9.9e-17  Score=138.54  Aligned_cols=155  Identities=18%  Similarity=0.159  Sum_probs=125.1

Q ss_pred             HHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeeeecCCCC
Q psy5413         105 ELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGVTNQKDG  183 (285)
Q Consensus       105 ~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~  183 (285)
                      .||++++++.|.+.++.++||..|+..++..++ ++||+|++++..|+.+.... ...      ..+|+++..++..   
T Consensus         2 aLE~~la~Leg~~~a~~~sSGMaAi~~~l~~ll-~~Gd~iv~~~~~Yg~t~~~~~~~l------~~~gi~~~~~d~~---   71 (331)
T d1pffa_           2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFL-KAGDHLISDDCLYGCTHALFEHQL------RKFGVEVDFIDMA---   71 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHH------HHTTCEEEEECTT---
T ss_pred             HHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHH------HhcCeEEEEeccc---
Confidence            589999999999999999999999999998877 69999998776554443211 111      3468777766553   


Q ss_pred             CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHH-HHcCCeEEEeCccCCh---hhhcccCCe
Q psy5413         184 TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARC-QEHNIPVHMDGARLPL---AEVCASVDT  259 (285)
Q Consensus       184 ~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la-~~~gi~li~Dea~~~~---~~~~~~~dv  259 (285)
                        |++.+++++++       ++++|++|.|.||+ ..+.+   ++++++++ +++|+++++|...+++   ..+..++|+
T Consensus        72 --d~~~~~~~i~~-------~t~~i~~Es~~np~-~~v~d---~~~~~~~~a~~~~~~~vVDnT~atp~~~~pl~~GaDi  138 (331)
T d1pffa_          72 --VPGNIEKHLKP-------NTRIVYFETPANPT-LKVID---IEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDI  138 (331)
T ss_dssp             --STTHHHHTCCT-------TEEEEEEESSCTTT-CCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSE
T ss_pred             --chhhHhhhccc-------ccceeeeecccccc-ccccc---chhhhhhhhcccCceEEeeccccccccccccccCCCE
Confidence              78899999988       89999999999999 89999   88888875 6789999999998833   234457999


Q ss_pred             EEEecccccCc---ceeEEeecCccc
Q psy5413         260 VMFCLSKGLGA---PVGSILAGPEEF  282 (285)
Q Consensus       260 ~~~s~sK~l~~---p~gg~~~~~~~~  282 (285)
                      ++.|.+|+++|   .+||+++.+++.
T Consensus       139 Vv~S~TKy~~Gh~d~~~G~v~~~~~~  164 (331)
T d1pffa_         139 VVHSATKYINGHTDVVAGLVCSRADI  164 (331)
T ss_dssp             EEEETTTTTSSSSSCCCEEEEECHHH
T ss_pred             EEecchhhcCCCCccccccccccccc
Confidence            99999999999   677888777543

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.2e-16  Score=143.84  Aligned_cols=153  Identities=19%  Similarity=0.133  Sum_probs=112.5

Q ss_pred             HHHHHHhHcCCCc---EEEcCChHHHHHHHHHHcc---ccCCCeEEecCCcceeeecccccccccccccccceeeeee--
Q psy5413         106 LQEKAAKLAGKEA---AIFVPSGTMGNLIAIMTHC---DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGV--  177 (285)
Q Consensus       106 l~~~la~~~g~~~---~~~~~~Gs~a~~~al~~~~---~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~--  177 (285)
                      +.+.+++++|.+.   .+++++|+++...++.++.   ..++++||++...|.+...+....         |...+.+  
T Consensus        99 ~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~---------g~~~~~v~~  169 (445)
T d3bc8a1          99 LVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTA---------GFEPVVIEN  169 (445)
T ss_dssp             HHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT---------TCEEEEECC
T ss_pred             HHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHc---------CCeeEEEEe
Confidence            4455666777643   4788888866555444433   134577999999998876644444         6555544  


Q ss_pred             -ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC-hh----
Q psy5413         178 -TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP-LA----  251 (285)
Q Consensus       178 -~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~-~~----  251 (285)
                       +.++++.+|+++|+++|++..   ..++++|+++.+++++ |.+.|   +++|+++|++||++||+|++++. ..    
T Consensus       170 ~~~~~~~~id~~~l~~~i~~~~---~~~~~~v~~~~~~~~~-G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~  242 (445)
T d3bc8a1         170 VLEGDELRTDLKAVEAKIQELG---PEHILCLHSTTACFAP-RVPDR---LEELAVICANYDIPHVVNNAYGLQSSKCMH  242 (445)
T ss_dssp             EEETTEEECCHHHHHHHHHHHC---GGGEEEEEEESSCCTT-BCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHH
T ss_pred             eccCcccccCHHHHHHHHHhcc---ccCeEEEEEeCCCCCC-eeehh---HHHHHHHHHHhCCcEEEEccchhhhhhccc
Confidence             345667899999999997642   2268999999999988 99999   99999999999999999999872 11    


Q ss_pred             -----hhcccCCeEEEecccccCcceeE
Q psy5413         252 -----EVCASVDTVMFCLSKGLGAPVGS  274 (285)
Q Consensus       252 -----~~~~~~dv~~~s~sK~l~~p~gg  274 (285)
                           .-..++|++++++||++++|.|+
T Consensus       243 ~~~~~~~~~~vd~~~~s~hK~~~~p~g~  270 (445)
T d3bc8a1         243 LIQQGARVGRIDAFVQSLDKNFMVPVGG  270 (445)
T ss_dssp             HHHHHHHHSCCCEEEEEHHHHHSCCSSC
T ss_pred             cchhccCcCCcceEEecCccccccCCCC
Confidence                 11246899999999999886553

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.66  E-value=3e-16  Score=136.28  Aligned_cols=189  Identities=12%  Similarity=0.029  Sum_probs=130.2

Q ss_pred             CCeeeeecc-CCcCCCcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcCCC-----cEEEcCChHHHHHHHHHHcc
Q psy5413          65 NIRTVDIRS-DTISKPTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAGKE-----AAIFVPSGTMGNLIAIMTHC  137 (285)
Q Consensus        65 ~~~~~~~~~-~~~~~~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g~~-----~~~~~~~Gs~a~~~al~~~~  137 (285)
                      +++++++.. +++...++.+.+++.+.+.. ...|.++....+|++.++++++.+     .+++++|+++++..+++   
T Consensus        18 ~~d~~~l~~~enp~~~p~~i~~~~~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~l~~---   94 (334)
T d2f8ja1          18 KRDKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMML---   94 (334)
T ss_dssp             CCCSEECSSCCCSSCCCHHHHHHHHHHCCTTGGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHHHHH---
T ss_pred             CCCceEEECCCCCCCCCHHHHHHHHHHhhcchhcCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHHHHHhh---
Confidence            567888874 57766778999998876653 334445667889999999998643     34666666666665433   


Q ss_pred             ccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCC
Q psy5413         138 DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYC  217 (285)
Q Consensus       138 ~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~  217 (285)
                        .+|+|++.++++.......         ...|.+++.++.++++..+     +...+       +++++++++|+||+
T Consensus        95 --~~d~v~i~~P~y~~~~~~~---------~~~g~~~v~v~~~~~~~~~-----~~~~~-------~~~~l~l~nP~NPt  151 (334)
T d2f8ja1          95 --MFDRSVFFPPTYSCYRIFA---------KAVGAKFLEVPLTKDLRIP-----EVNVG-------EGDVVFIPNPNNPT  151 (334)
T ss_dssp             --HSSEEEECSSCCHHHHHHH---------HHHTCCEEECCCCTTSCCC-----CCCCC-------TTEEEEEESSCTTT
T ss_pred             --hccccccccccccccccch---------hccCCcccccccccccccc-----ccccc-------cceEEEeccccccc
Confidence              4688999888765443322         3448899999886655332     11222       78999999999999


Q ss_pred             CeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCC--eEEEecccccCc--ceeEEeecCccccc
Q psy5413         218 GGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVD--TVMFCLSKGLGA--PVGSILAGPEEFIQ  284 (285)
Q Consensus       218 gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~d--v~~~s~sK~l~~--p~gg~~~~~~~~i~  284 (285)
                       |.+++.+++.+    +.++++++|+||++...     .......+  +++.|+||.++.  .+.|++++++++++
T Consensus       152 -G~~~s~~~l~~----~~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~i~  222 (334)
T d2f8ja1         152 -GHVFEREEIER----ILKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFID  222 (334)
T ss_dssp             -CCCCCHHHHHH----HHTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEEECHHHHH
T ss_pred             -ceeecHHHhhc----cccceeEEeecccchhhcccccccccccCceEEEEecCccccchhhhhhhhcccchHHHH
Confidence             89999555444    35689999999997611     11112223  449999998664  68888888887654

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.65  E-value=3.9e-16  Score=137.44  Aligned_cols=176  Identities=14%  Similarity=0.107  Sum_probs=133.4

Q ss_pred             HHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCC--eEEecCCcceeeeccc
Q psy5413          81 MEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDS--EIIVGDCSHIMLWEQG  158 (285)
Q Consensus        81 ~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~--~vi~~~~~h~~~~~~~  158 (285)
                      ++-++++.+.+. ...+...+...++|+.+++++|.+.+++++|||.|+.++++++..+.||  +|+++..++..+..+.
T Consensus        12 ~~~~~~v~~~l~-~~~~~~G~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~ai   90 (371)
T d2fnua1          12 KEDKKAVLEVLN-SKQLTQGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANML   90 (371)
T ss_dssp             HHHHHHHHHHHT-SSCCSSSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCccCCHHHHHHHHHHHHHHCcCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccceee
Confidence            444556666553 3455567889999999999999999999999999999999997655554  7999887765543322


Q ss_pred             ccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC
Q psy5413         159 GASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN  238 (285)
Q Consensus       159 ~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g  238 (285)
                      .         ..|.+++.+..+++..++.+++++++++       ++++|++.+..    |...+   ++++.++|+++|
T Consensus        91 ~---------~~G~~pv~vDi~~~~~~~~~~~~~~~~~-------~t~avi~vh~~----G~~~~---~~~i~~~~~~~~  147 (371)
T d2fnua1          91 L---------ESGYTPVFAGIKNDGNIDELALEKLINE-------RTKAIVSVDYA----GKSVE---VESVQKLCKKHS  147 (371)
T ss_dssp             H---------HTTCEEEECCBCTTSSBCGGGSGGGCCT-------TEEEEEEECGG----GCCCC---HHHHHHHHHHHT
T ss_pred             e---------ccCcccccccccccccccchhhhhhccc-------hhhcccccccc----ccccc---cccccccccccc
Confidence            2         3488888888877777777888888877       89999998777    88999   899999999999


Q ss_pred             CeEEEeCccC-Chh----hhcccCCeE--EEecccccCcceeEEeecCc
Q psy5413         239 IPVHMDGARL-PLA----EVCASVDTV--MFCLSKGLGAPVGSILAGPE  280 (285)
Q Consensus       239 i~li~Dea~~-~~~----~~~~~~dv~--~~s~sK~l~~p~gg~~~~~~  280 (285)
                      +++|.|.+|+ +..    ......|+.  .+...|.+++.-||+++++.
T Consensus       148 i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~K~l~~g~GG~i~t~~  196 (371)
T d2fnua1         148 LSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTAEGGAVVTND  196 (371)
T ss_dssp             CEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESC
T ss_pred             hhhccchhhccCceeccccCCccccccccccccccccccccceEEEeec
Confidence            9999999988 211    111233444  55558998886677777654

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.64  E-value=3.9e-16  Score=138.56  Aligned_cols=197  Identities=13%  Similarity=0.083  Sum_probs=137.8

Q ss_pred             eeeeeccCCcCCCcHHHHHHHHhcccCC---CCc----c--CChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHH
Q psy5413          67 RTVDIRSDTISKPTMEMKNYMFNCEVGD---DVY----L--EDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMT  135 (285)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~---~~y----~--~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~  135 (285)
                      .++.|.+...+..+..+.+++.+.....   ...    .  .....+++++++++++|++  ..+|+.++|+++..++..
T Consensus        27 ~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~  106 (404)
T d1qz9a_          27 GVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSA  106 (404)
T ss_dssp             TCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHH
T ss_pred             CCEEcCCcccccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhh
Confidence            4577777777777888888877655321   111    0  1234678999999999976  469999999998877653


Q ss_pred             cc-----ccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413         136 HC-----DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCV  210 (285)
Q Consensus       136 ~~-----~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i  210 (285)
                      +.     ..+++.+++.+..|........         ..+.++..++...++..+++.++++|++       +|++|.+
T Consensus       107 ~~~~~~~~~~~~~vi~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------~T~lV~i  170 (404)
T d1qz9a_         107 ALRVQATRSPERRVIVTETSNFPTDLYIA---------EGLADMLQQGYTLRLVDSPEELPQAIDQ-------DTAVVML  170 (404)
T ss_dssp             HHHHHHHHSTTCCEEEEETTSCHHHHHHH---------HHHHHHHCSSCEEEEESSGGGHHHHCST-------TEEEEEE
T ss_pred             hhhhhcccCCCcEEEEeccccchHHHHHH---------hhhheeeeeceeccccccchhHHHhcCC-------CceEEEE
Confidence            32     1356777776555433211100         1122222333223344577889999988       8999999


Q ss_pred             ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----ChhhhcccCCeEEEecccccCc-ce-eEEeecCcccc
Q psy5413         211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGA-PV-GSILAGPEEFI  283 (285)
Q Consensus       211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~-p~-gg~~~~~~~~i  283 (285)
                      .+++|.+ |.+.|   +++|+++|+++|+++++|.+|+    .+.....++|+++++.+||+++ |. +|++..+++++
T Consensus       171 ~~v~~~t-G~~~p---v~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~  245 (404)
T d1qz9a_         171 THVNYKT-GYMHD---MQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLC  245 (404)
T ss_dssp             ESBCTTT-CBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTT
T ss_pred             ecccccc-cceec---HHHHhccccccccceeEEeeccccccccccccccceEEEEechhhcccCCceEEEEEechhhh
Confidence            9999999 99999   9999999999999999999988    3333346899999999999866 44 46666665543

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.63  E-value=4.5e-16  Score=139.74  Aligned_cols=163  Identities=18%  Similarity=0.141  Sum_probs=115.5

Q ss_pred             HHHHHHhHcCCCcE--EEcCChHHHHHHHHHHccc-cCCCeEEecCCcceeeecccccccccccccccceeeeee---ec
Q psy5413         106 LQEKAAKLAGKEAA--IFVPSGTMGNLIAIMTHCD-RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGV---TN  179 (285)
Q Consensus       106 l~~~la~~~g~~~~--~~~~~Gs~a~~~al~~~~~-~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~---~~  179 (285)
                      +...+++++|.+..  ++..+|++++.+++.+... .+++.||++...|.+...+....         |...+.+   +.
T Consensus       118 ~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~---------g~~~~~v~~~~~  188 (434)
T d2z67a1         118 ILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFV---------GMNMRLVETVLD  188 (434)
T ss_dssp             HHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHT---------TCEEEEECCEEE
T ss_pred             HHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHh---------CCcceEEEeecC
Confidence            33446677777654  4445555666666666432 25778999999998776644343         4444444   34


Q ss_pred             CCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh--------
Q psy5413         180 QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA--------  251 (285)
Q Consensus       180 ~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~--------  251 (285)
                      .+.+.+|+++|+++|+++.+.  +++.+|+++++++++ |.+.|   +++|+++|++||+|+|+|++++...        
T Consensus       189 ~~~~~~d~~~l~~~i~~~~~~--~~~~~v~~~~~~~~~-g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~  262 (434)
T d2z67a1         189 GDRVYVPVEDIENAIKKEIEL--GNRPCVLSTLTFFPP-RNSDD---IVEIAKICENYDIPHIINGAYAIQNNYYLEKLK  262 (434)
T ss_dssp             TTEEECCHHHHHHHHHHHHHT--TCCEEEEEESSCCTT-BCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHH
T ss_pred             CCccCCCHHHHHHHHHhhhhc--CCceEEEeccCcCCC-ccccC---HHHHHHHHHHhCCeEEEeccchhhhhhcccccc
Confidence            455679999999999864322  267899999999887 99999   9999999999999999999987211        


Q ss_pred             -hhcccCCeEEEecccccCcceeE--EeecCcccc
Q psy5413         252 -EVCASVDTVMFCLSKGLGAPVGS--ILAGPEEFI  283 (285)
Q Consensus       252 -~~~~~~dv~~~s~sK~l~~p~gg--~~~~~~~~i  283 (285)
                       ....++|++++++||++++|.|+  +++++++++
T Consensus       263 ~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~  297 (434)
T d2z67a1         263 KAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFI  297 (434)
T ss_dssp             HHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHH
T ss_pred             ccccCCcceEEEcCccccccCCCccccccCcHHHH
Confidence             12357899999999999886553  334555543

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=2.6e-15  Score=132.29  Aligned_cols=190  Identities=13%  Similarity=0.056  Sum_probs=130.7

Q ss_pred             CCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCC----C--cEEEcCChHHHHHHHHHHccc--cCCCeEEecC
Q psy5413          77 SKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGK----E--AAIFVPSGTMGNLIAIMTHCD--RRDSEIIVGD  148 (285)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~----~--~~~~~~~Gs~a~~~al~~~~~--~~g~~vi~~~  148 (285)
                      ...+++|++||.....+|..-.....+.++++.+.++++.    +  ..+|+.|||+++++++..+..  ++||++++..
T Consensus        12 ~~v~~~V~~Am~~~~~~hr~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~   91 (382)
T d2bkwa1          12 IILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVS   91 (382)
T ss_dssp             CCCCHHHHHTTSCCCCCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEEC
T ss_pred             CCCCHHHHHHhCcccCCCCcHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence            3357889998866555443222234466777777777753    2  258999999999999998753  4688888766


Q ss_pred             Ccceeeecccccccccccccccceeeeeeec-CCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHH
Q psy5413         149 CSHIMLWEQGGASQTSVYSQIGRVLMRGVTN-QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWL  227 (285)
Q Consensus       149 ~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l  227 (285)
                      ..|..... ....      ...+.....+.. ++....+.+.+++.+.+.      +++++++.+.++.+ |...|   +
T Consensus        92 ~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~t-g~~~~---~  154 (382)
T d2bkwa1          92 TGTFSDRF-ADCL------RSYGAQVDVVRPLKIGESVPLELITEKLSQN------SYGAVTVTHVDTST-AVLSD---L  154 (382)
T ss_dssp             SSHHHHHH-HHHH------HHTTCEEEEECCSSTTSCCCHHHHHHHHHHS------CCSEEEEESEETTT-TEECC---H
T ss_pred             echhhhhh-hhhc------cccccccccccccCCCCccchhHHHHHhhhc------cchheeeeeccccc-ccccc---c
Confidence            55432211 1111      223444444433 234457888888888653      67899999988888 99999   7


Q ss_pred             HHHHHHHHHc--CCeEEEeCccC----ChhhhcccCCeEEEecccccCcc-eeEEeecCcccc
Q psy5413         228 RELKARCQEH--NIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGAP-VGSILAGPEEFI  283 (285)
Q Consensus       228 ~~i~~la~~~--gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~p-~gg~~~~~~~~i  283 (285)
                      +++.++|+++  ++++++|.+++    ++..-.+++|+++.|.+||+++| -.|+++.+++++
T Consensus       155 ~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~  217 (382)
T d2bkwa1         155 KAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFM  217 (382)
T ss_dssp             HHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHH
T ss_pred             hhhhhhccccccceeeeeecccccccccccccccCeeEEeecccccCcCCCchhhhhccHHHH
Confidence            8888777765  59999999988    33334468999999999999884 446777666554

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.60  E-value=1.3e-14  Score=128.60  Aligned_cols=193  Identities=13%  Similarity=0.066  Sum_probs=135.4

Q ss_pred             ccCCcCCCcHHHHHHHHhcccC--------CCCccCChhHHHHHHHH----HhHcCCC----cE-EEcCChHHHHHHHHH
Q psy5413          72 RSDTISKPTMEMKNYMFNCEVG--------DDVYLEDPTCKELQEKA----AKLAGKE----AA-IFVPSGTMGNLIAIM  134 (285)
Q Consensus        72 ~~~~~~~~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~~~l----a~~~g~~----~~-~~~~~Gs~a~~~al~  134 (285)
                      .++|+  .++.|++++...+.+        ...|+.....+++|+..    .++|+.+    .+ +-..||+.|+.+++.
T Consensus        38 aSEN~--~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~  115 (470)
T d1rv3a_          38 ASENF--ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYT  115 (470)
T ss_dssp             TTCCC--CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHH
T ss_pred             cCCCc--CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHH
Confidence            35555  489999998776653        23455566677777554    7778876    23 788899999999999


Q ss_pred             HccccCCCeEEecC---CcceeeecccccccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413         135 THCDRRDSEIIVGD---CSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCV  210 (285)
Q Consensus       135 ~~~~~~g~~vi~~~---~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i  210 (285)
                      +++ ++||.|+..+   ..|.+........ ...+ .....+.+..+.+ +++.+|.+++++..++.      ++++|++
T Consensus       116 all-~pgD~im~~~l~~GGHlshg~~~~~~-~~~~-~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~------kPklIi~  186 (470)
T d1rv3a_         116 ALV-EPHGRIMGLDLPDGGHLTHGFMTDKK-KISA-TSIFFESMAYKVNPDTGYIDYDRLEENARLF------HPKLIIA  186 (470)
T ss_dssp             HHT-CTTCEEEEECGGGTCCGGGCCBCSSC-BCSH-HHHHSEEEEECBCTTTCSBCHHHHHHHHHHH------CCSEEEE
T ss_pred             Hhc-CCCCeEeeeccccCCcccccccccCC-Cccc-ccceeEeeEEEEecccCcccHHHHHHHHHhh------CcceEee
Confidence            987 6999988743   3333221100000 0000 0112234455544 34789999999998774      7889988


Q ss_pred             ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecCcc
Q psy5413         211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGPEE  281 (285)
Q Consensus       211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~  281 (285)
                      -....+   ..+|   +++++++|++.|.+|++|.+|. ++.      .-..++|+++.|.||+|.||+||+++.+++
T Consensus       187 G~S~y~---r~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~aDvvt~tTHKtlrGPrgGiI~~~~~  258 (470)
T d1rv3a_         187 GTSCYS---RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRRG  258 (470)
T ss_dssp             CCSSCC---SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSCEEEEEECS
T ss_pred             chhhcc---ccCC---HHHHHHHHhccCCeEEecchhhhhhccccccCChhheeeeeeeehhhhccCCcceEEEEccc
Confidence            665553   6777   9999999999999999999988 221      223678999999999999999999998764

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.58  E-value=3.7e-15  Score=131.39  Aligned_cols=188  Identities=14%  Similarity=0.103  Sum_probs=135.5

Q ss_pred             CCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc--E-EEcCChHHHHHHHHHHccccCCCeEEecCCccee
Q psy5413          77 SKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA--A-IFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIM  153 (285)
Q Consensus        77 ~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~--~-~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~  153 (285)
                      ...+++|++|+.+...+|..-...+...++++.|+++++.+.  + +|+.|||.++++++..+. .+++++++....|..
T Consensus        26 ~~~~~~V~~Am~~~~~~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~-~~~~~vl~~~~g~~~  104 (388)
T d2ch1a1          26 SNCSKRVLTAMTNTVLSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL-EEGDRVLIAVNGIWA  104 (388)
T ss_dssp             CCCCHHHHHHTTSCCCCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC-CTTCEEEEEESSHHH
T ss_pred             CCCCHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhc-ccccccccccccccc
Confidence            445899999987766555433344668899999999998752  3 677889999999999987 578887765554433


Q ss_pred             eecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHH
Q psy5413         154 LWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR  233 (285)
Q Consensus       154 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~l  233 (285)
                      ... ....      ...+...+.+...+....+.+.+++.+...      +++++.+.+.++.+ |.+.|   +++++++
T Consensus       105 ~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~t~t-G~~~~---~~~i~~~  167 (388)
T d2ch1a1         105 ERA-VEMS------ERYGADVRTIEGPPDRPFSLETLARAIELH------QPKCLFLTHGDSSS-GLLQP---LEGVGQI  167 (388)
T ss_dssp             HHH-HHHH------HHTTCEEEEEECCTTSCCCHHHHHHHHHHH------CCSEEEEESEETTT-TEECC---CTTHHHH
T ss_pred             ccc-hhhh------hhhcccccccccccccccchhhhhhhhccC------Ccceeeeeeccccc-ccccc---hhhhcch
Confidence            211 1111      233555555655555556778777776553      78899999988888 89999   9999999


Q ss_pred             HHHcCCeEEEeCccC----ChhhhcccCCeEEEecccccCcc-eeEEeecCccc
Q psy5413         234 CQEHNIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGAP-VGSILAGPEEF  282 (285)
Q Consensus       234 a~~~gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~p-~gg~~~~~~~~  282 (285)
                      ||++|+++++|.+++    .+..-..++|+++.+.+|++++| ..|++..+++.
T Consensus       168 ~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~  221 (388)
T d2ch1a1         168 CHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKA  221 (388)
T ss_dssp             HHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHH
T ss_pred             hccccceeeeeeeecccccccchhccCceEEEEccccccCCCCeEEEEeccHHH
Confidence            999999999999988    22223368899999999999994 44566555443

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.57  E-value=5.9e-15  Score=129.44  Aligned_cols=190  Identities=17%  Similarity=0.139  Sum_probs=132.1

Q ss_pred             cCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc---EEEcCChHHHHHHHHHHccccCCCeEEecCCcce
Q psy5413          76 ISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA---AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHI  152 (285)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~---~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~  152 (285)
                      |...+++|++||.....+|..-.......++++.++++++.+.   ++|+.|||+++++++..+. .+++.+++....|.
T Consensus        26 P~~v~~~Vl~am~~~~~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~-~~~~~~~~~~~~~~  104 (377)
T d1vjoa_          26 PSNAHPSVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV-EPGDVVLIGVAGYF  104 (377)
T ss_dssp             CCCCCHHHHHHHSSCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC-CTTCEEEEEESSHH
T ss_pred             CCCCCHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhcc-ccccccceeeechh
Confidence            3556889999997666555433334668899999999998753   4777889999999999977 57887776655553


Q ss_pred             eeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHH
Q psy5413         153 MLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKA  232 (285)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~  232 (285)
                      ..... ...      ...+.....+....+...+.+..+....+.      ++++|.+.+.+|.+ |.+.|   ++++.+
T Consensus       105 ~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~t-g~~~~---i~~i~~  167 (377)
T d1vjoa_         105 GNRLV-DMA------GRYGADVRTISKPWGEVFSLEELRTALETH------RPAILALVHAETST-GARQP---LEGVGE  167 (377)
T ss_dssp             HHHHH-HHH------HHTTCEEEEEECCTTCCCCHHHHHHHHHHH------CCSEEEEESEETTT-TEECC---CTTHHH
T ss_pred             hhhhh-hhh------hhhcccccccccCCCCcccchhhhhhhhcC------cceeeeeeeeeccc-eeeec---hhhhhh
Confidence            22111 111      122333334433333344555555554332      77889999988888 99999   999999


Q ss_pred             HHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCc-ceeEEeecCcccc
Q psy5413         233 RCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGA-PVGSILAGPEEFI  283 (285)
Q Consensus       233 la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~-p~gg~~~~~~~~i  283 (285)
                      +||++|+++++|++++ +   +.....++|+++.+.+||+++ +.++++..+++.+
T Consensus       168 ~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~  223 (377)
T d1vjoa_         168 LCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAI  223 (377)
T ss_dssp             HHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHH
T ss_pred             hhhhccceEEEecchhhhhhhhcccccccceeeecccccccCCCEEEEecchhhHH
Confidence            9999999999999987 2   233346889999999999988 4555555555433

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.55  E-value=1.4e-14  Score=128.01  Aligned_cols=190  Identities=14%  Similarity=0.116  Sum_probs=122.8

Q ss_pred             cCCcCCCcHHHHHHHHhcccC--------CCCccCChhHHHHH----HHHHhHcCCCcE-----EEcCChHHHHHHHHHH
Q psy5413          73 SDTISKPTMEMKNYMFNCEVG--------DDVYLEDPTCKELQ----EKAAKLAGKEAA-----IFVPSGTMGNLIAIMT  135 (285)
Q Consensus        73 ~~~~~~~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~----~~la~~~g~~~~-----~~~~~Gs~a~~~al~~  135 (285)
                      ++|+  .++.|++++...+.+        ...|+.....+++|    ++..++|+++.+     +-..||+.|+.+++.+
T Consensus        35 SEN~--~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~a  112 (463)
T d2a7va1          35 SENF--CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA  112 (463)
T ss_dssp             TCCC--CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH
T ss_pred             cCCc--CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHH
Confidence            4554  489999998766543        12344333344444    556778898863     7888999999999999


Q ss_pred             ccccCCCeEEec---CCcceeeecccccccccccccccce--eeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413         136 HCDRRDSEIIVG---DCSHIMLWEQGGASQTSVYSQIGRV--LMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVC  209 (285)
Q Consensus       136 ~~~~~g~~vi~~---~~~h~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~  209 (285)
                      ++ ++||+|+..   ...|.+........ ...   ..+.  +.+....+ +++.+|.+++++..++.      ++++|+
T Consensus       113 ll-~pgD~Im~l~l~~GGHlshg~~~~~~-~~~---~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~------kPklIi  181 (463)
T d2a7va1         113 LL-QPHDRIMGLDLPDGGHLTHGYMSDVK-RIS---ATSIFFESMPYKLNPKTGLIDYNQLALTARLF------RPRLII  181 (463)
T ss_dssp             HC-CSCEECCC-----------------------------------CCBCTTTCSBCHHHHHHHHHHH------CCSEEE
T ss_pred             Hc-CCCceEEeeccCcCcccccccccccc-ccc---ceeeEeeeeeeeccCCCCcCcHHHHHHHHhhc------CCceEE
Confidence            87 699987753   23343221100000 000   0122  22233333 45679999999999875      789999


Q ss_pred             EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecCcc
Q psy5413         210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGPEE  281 (285)
Q Consensus       210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~  281 (285)
                      +-....+   ..+|   +++++++|++.|.+|++|.+|. ++.      .-..++|+++.|.||+|.||+||+++.+++
T Consensus       182 ~G~S~y~---r~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~aDvvt~tTHKTlrGPrgGiIl~~~~  254 (463)
T d2a7va1         182 AGTSAYA---RLID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKG  254 (463)
T ss_dssp             ECCSSCC---SCCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSCSCEEEEEECS
T ss_pred             ecccccc---cccC---HHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhhhhhhhchhhhhhcCCCceEEEEccc
Confidence            8665553   6777   9999999999999999999988 221      223678999999999999999999998763

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.48  E-value=2.1e-13  Score=118.66  Aligned_cols=187  Identities=11%  Similarity=0.012  Sum_probs=129.7

Q ss_pred             cCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCCCeEEecCCccee
Q psy5413          76 ISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIM  153 (285)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~  153 (285)
                      |...+++|++|+.+...+|..-.......++++.++++++.+.  .+++.|||.++++++..++ ++|+++++....+..
T Consensus         8 P~~v~~~V~~am~~~~~~hr~~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~-~~g~~vlv~~~G~f~   86 (348)
T d1iuga_           8 PVRLHPKALEALARPQLHHRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF-APGERVLVPVYGKFS   86 (348)
T ss_dssp             SCCCCHHHHHHHHSCCCCTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC-CTTCEEEEEECSHHH
T ss_pred             CCCCCHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcc-cccccceeecchHHH
Confidence            3456889999998877655432233567889999999988764  4789999999999999987 588887765444322


Q ss_pred             eecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHH
Q psy5413         154 LWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR  233 (285)
Q Consensus       154 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~l  233 (285)
                      . .+...+      +..+..+..+..++....++++   ..+.       +++.|.+.+..+.+ |.+.|   +++|.++
T Consensus        87 ~-~~~~~a------~~~~~~~~~~~~~~g~~~~~~~---~~~~-------~~~~v~~~h~eTst-G~~~~---i~~i~~~  145 (348)
T d1iuga_          87 E-RFYEIA------LEAGLVVERLDYPYGDTPRPED---VAKE-------GYAGLLLVHSETST-GALAD---LPALARA  145 (348)
T ss_dssp             H-HHHHHH------HHTTCEEEEEECCTTCCCCTTT---SCCS-------SCSEEEEESEETTT-TEECC---HHHHHHH
T ss_pred             H-HHHHHH------HhcCcccccccccCCCcccccc---cccc-------CCCeeEEEecchhh-hhhcc---HHHHHHH
Confidence            1 112222      3445566665553333334322   1222       67788888876666 89999   9999999


Q ss_pred             HHHc--CCeEEEeCccC----ChhhhcccCCeEEEecccccCc-ceeEEeecCccccc
Q psy5413         234 CQEH--NIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGA-PVGSILAGPEEFIQ  284 (285)
Q Consensus       234 a~~~--gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~-p~gg~~~~~~~~i~  284 (285)
                      |++|  +.++++|.+++    ++..-.+++|+++.+.+|+|++ |-.++++.+++.++
T Consensus       146 ~~~~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gppG~~~v~~s~~~le  203 (348)
T d1iuga_         146 FKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALE  203 (348)
T ss_dssp             HHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHH
T ss_pred             HHhhhccceeechhhhcccccccccccccCCEEEeccccceecCCceeeeeechHHHh
Confidence            9887  47899999987    2333346899999999999977 54477777776554

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.36  E-value=2e-13  Score=121.58  Aligned_cols=184  Identities=14%  Similarity=-0.046  Sum_probs=117.9

Q ss_pred             CeeeeeccCCcCCCcHHHHHHHHhcc---cC--CCCccC----ChhHHHHHHHHHhHc---C---CC--cEEEcCChHHH
Q psy5413          66 IRTVDIRSDTISKPTMEMKNYMFNCE---VG--DDVYLE----DPTCKELQEKAAKLA---G---KE--AAIFVPSGTMG  128 (285)
Q Consensus        66 ~~~~~~~~~~~~~~~~~v~~a~~~~~---~~--~~~y~~----~~~~~~l~~~la~~~---g---~~--~~~~~~~Gs~a  128 (285)
                      ..++|+.++.|..-.|--++...+..   .+  ...|..    +....+|++.|+++.   |   .+  .+++.+|++++
T Consensus        56 ~~~~~~~~gdp~~~~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gstel  135 (425)
T d2hoxa1          56 GCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQL  135 (425)
T ss_dssp             TCCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHH
T ss_pred             CceeeCCCCCCCCCCHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHH
Confidence            46788888888775553332222111   12  122332    233468999999875   3   12  36777777899


Q ss_pred             HHHHHHHcc-------ccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhccccccc
Q psy5413         129 NLIAIMTHC-------DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIH  201 (285)
Q Consensus       129 ~~~al~~~~-------~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~  201 (285)
                      +.+++.++.       ..+|++|+++.++|..+.....         ..+...+.++      .|.+.+++++++     
T Consensus       136 i~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~---------~~~~~~~~~~------~D~~~~~~~~~~-----  195 (425)
T d2hoxa1         136 IHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTK---------YFDKKGYVWA------GNAANYVNVSNP-----  195 (425)
T ss_dssp             HHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHH---------HSCBTTEEEE------EEGGGGTTCSCG-----
T ss_pred             HHHHHHHhccccccccCCCCCEEEEecCccccHHHHHH---------HcCCCCCccC------CCHHHHHhhCCC-----
Confidence            999998873       1478899999988755433221         2233333333      367777777776     


Q ss_pred             CCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh--hhhc--ccCCeEEEecccccCc--ceeEE
Q psy5413         202 CASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL--AEVC--ASVDTVMFCLSKGLGA--PVGSI  275 (285)
Q Consensus       202 ~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~--~~~~--~~~dv~~~s~sK~l~~--p~gg~  275 (285)
                        +++++++++||||| |.+..          +..+++.+|.||+|...  ..+.  ..-++++.|+||.++.  .+.|+
T Consensus       196 --~~~ii~l~sPnNPt-G~l~~----------~v~~~~~~I~DEaY~~~~f~~~~~~~~~~Ivl~S~SK~fglaGlRiGw  262 (425)
T d2hoxa1         196 --EQYIEMVTSPNNPE-GLLRH----------AVIKGCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGW  262 (425)
T ss_dssp             --GGEEEEEESSCTTT-CCCCC----------CSSTTCEEEEECTTCSTTTSCCCSCBCCSEEEEEHHHHTSCGGGCCEE
T ss_pred             --CceEEEEECCCCCC-cchhh----------hhhhCCEEEEeccccCccccchhhhcCCeEEEEeCHHhccCcchheee
Confidence              88999999999999 66643          33479999999998622  1111  2335779999998775  66776


Q ss_pred             e-ecCccc
Q psy5413         276 L-AGPEEF  282 (285)
Q Consensus       276 ~-~~~~~~  282 (285)
                      + +.++++
T Consensus       263 ~i~~~~~i  270 (425)
T d2hoxa1         263 ALIKDESV  270 (425)
T ss_dssp             EEECCHHH
T ss_pred             EEeCCHHH
Confidence            5 555544

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.20  E-value=3e-12  Score=111.51  Aligned_cols=182  Identities=11%  Similarity=0.035  Sum_probs=115.9

Q ss_pred             cCCCcHHHHHHHHhcccCC------------CCccCChhHHHHHHHHHhHcCCCc---EEEcCChH-HHHHHHHHHcccc
Q psy5413          76 ISKPTMEMKNYMFNCEVGD------------DVYLEDPTCKELQEKAAKLAGKEA---AIFVPSGT-MGNLIAIMTHCDR  139 (285)
Q Consensus        76 ~~~~~~~v~~a~~~~~~~~------------~~y~~~~~~~~l~~~la~~~g~~~---~~~~~~Gs-~a~~~al~~~~~~  139 (285)
                      |...+++|+++|.+...+.            ..-.....+.+.++.|+++++.+.   ++|+++++ .++++++..+. .
T Consensus        11 P~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l~-~   89 (361)
T d2c0ra1          11 PAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFL-K   89 (361)
T ss_dssp             SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHC-C
T ss_pred             CcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhccc-c
Confidence            3446889999999877531            111122457889999999998864   46656554 44555555544 5


Q ss_pred             CCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCe
Q psy5413         140 RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGG  219 (285)
Q Consensus       140 ~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG  219 (285)
                      +++.+++....+ ....+..+.      ...+..+..+..+.....+++.+++.+..       . ..+.+++++    |
T Consensus        90 ~~~~~l~~~~g~-~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~v~~~t----g  150 (361)
T d2c0ra1          90 EGQTANYVMTGS-WASKALKEA------KLIGDTHVAASSEASNYMTLPKLQEIQLQ-------D-NAAYLHLTS----N  150 (361)
T ss_dssp             TTCEEEEEECSH-HHHHHHHHH------HHHSCEEEEEECGGGTTCSCCCGGGCCCC-------T-TEEEEEEES----E
T ss_pred             CCCceEEEeech-hhhhhhhhh------hhcCceeeeeccccccccchhhhhhhccc-------C-cceEEEEec----c
Confidence            677665443222 111122222      34577777776655556677777776655       2 234444443    7


Q ss_pred             eeCCHHHHHHHHHHHHHcCCeEEEeCccC--ChhhhcccCCeEEEecccccCcc-eeEEeecCc
Q psy5413         220 TVLPMQWLRELKARCQEHNIPVHMDGARL--PLAEVCASVDTVMFCLSKGLGAP-VGSILAGPE  280 (285)
Q Consensus       220 ~~~~~~~l~~i~~la~~~gi~li~Dea~~--~~~~~~~~~dv~~~s~sK~l~~p-~gg~~~~~~  280 (285)
                      .+.+   ++++.++|+++|+++++|++++  ....-.+..|+.+.+.+|.++.| .+++++..+
T Consensus       151 ~~~~---~~~i~~~~~~~~al~~vDavss~g~~~id~~~~di~~~s~~k~~~~~~~~~~~~~~~  211 (361)
T d2c0ra1         151 ETIE---GAQFKAFPDTGSVPLIGDMSSDILSRPFDLNQFGLVYAGAQKNLGPSGVTVVIVRED  211 (361)
T ss_dssp             ETTT---TEECSSCCCCTTSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTCCSSCEEEEEEGG
T ss_pred             ccee---cceEEEeeccCCceEEEEeeccccccccccccceeEEEecccccccccCcEEEEEhH
Confidence            8888   7888899999999999999988  22222356788888999999884 444444443

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.11  E-value=1.2e-11  Score=107.40  Aligned_cols=190  Identities=6%  Similarity=-0.066  Sum_probs=107.7

Q ss_pred             eeeeeccCCcCCCcHHHHHHHHhcccCCCC------------ccCChhHHHHHHHHHhHcCCCc---EEEcCChHHHHHH
Q psy5413          67 RTVDIRSDTISKPTMEMKNYMFNCEVGDDV------------YLEDPTCKELQEKAAKLAGKEA---AIFVPSGTMGNLI  131 (285)
Q Consensus        67 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~------------y~~~~~~~~l~~~la~~~g~~~---~~~~~~Gs~a~~~  131 (285)
                      ++++|..+ |...+++|++++.++..+...            -.....+.+.++.++++++.+.   +++++++++++..
T Consensus         3 ~~~nF~pG-P~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~   81 (360)
T d1w23a_           3 QVFNFNAG-PSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFT   81 (360)
T ss_dssp             CCEECCSS-SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHH
T ss_pred             ceeEeCCC-CcCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHH
Confidence            34555553 355679999999987753210            0012357889999999998754   3666666666655


Q ss_pred             HHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413         132 AIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVE  211 (285)
Q Consensus       132 al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~  211 (285)
                      +......+.++.+++....|.... .....      ...+...+...........+++++.....        ...+.++
T Consensus        82 ~~~~~~~~~~~~v~~~~~g~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~  146 (360)
T d1w23a_          82 MLPMNLLTKGTIGNYVLTGSWSEK-ALKEA------KLLGETHIAASTKANSYQSIPDFSEFQLN--------ENDAYLH  146 (360)
T ss_dssp             HHHHHHCCTTCEEEEEECSHHHHH-HHHHH------HTTSEEEEEEECGGGTSCSCCCGGGCCCC--------TTEEEEE
T ss_pred             HHHhhhcccCcccceeeccchhhh-hHHHH------HHhhhcceeeccccccccchhhhhhcccc--------cccceeE
Confidence            555545456666655433222111 11111      22344444333322222233344333322        2345555


Q ss_pred             cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhh-hcccCCeEEEecccccCc-ceeEEeecC
Q psy5413         212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAE-VCASVDTVMFCLSKGLGA-PVGSILAGP  279 (285)
Q Consensus       212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~-~~~~~dv~~~s~sK~l~~-p~gg~~~~~  279 (285)
                      +.+    |.+.|   +++|.++|+++|+++|+|.+++ +... -.+..|+.+.+++|.+++ |.++++..+
T Consensus       147 ~~t----g~~~~---~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~~~~~~~~~~~  210 (360)
T d1w23a_         147 ITS----NNTIY---GTQYQNFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSGVTVVIVKK  210 (360)
T ss_dssp             EES----EETTT---TEECSSCCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCTTCEEEEEEH
T ss_pred             ecC----Ccccc---ceeeeeccccceeeEEeeccccccccccccccccceEEeeccccccCCcceeeEec
Confidence            544    88999   8899999999999999999988 2211 123445666666676655 344444433

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=1.5e-11  Score=106.29  Aligned_cols=192  Identities=8%  Similarity=-0.066  Sum_probs=113.7

Q ss_pred             eeeeccCCcCCCcHHHHHHHHhcccCCCC--------cc----CChhHHHHHHHHHhHcCCCc---EEEcCChHHHHHHH
Q psy5413          68 TVDIRSDTISKPTMEMKNYMFNCEVGDDV--------YL----EDPTCKELQEKAAKLAGKEA---AIFVPSGTMGNLIA  132 (285)
Q Consensus        68 ~~~~~~~~~~~~~~~v~~a~~~~~~~~~~--------y~----~~~~~~~l~~~la~~~g~~~---~~~~~~Gs~a~~~a  132 (285)
                      +++|.. .|...+++|++++.+...+...        ..    ....+.+.++.|+++++.+.   ++|++++++++..+
T Consensus         2 ~~nF~p-GP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a   80 (360)
T d1bjna_           2 IFNFSS-GPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAA   80 (360)
T ss_dssp             CEECCS-SSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred             eEEeCC-CCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhh
Confidence            345543 3355689999999988753210        00    12347899999999998753   46666665555444


Q ss_pred             HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413         133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN  212 (285)
Q Consensus       133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~  212 (285)
                      +......+++.+++....+. ........      ...+...+......+...+.+.+++.+..       +++++.+..
T Consensus        81 ~~~~~~~~~~~v~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~v~~  146 (360)
T d1bjna_          81 VPLNILGDKTTADYVDAGYW-AASAIKEA------KKYCTPNVFDAKVTVDGLRAVKPMREWQL-------SDNAAYMHY  146 (360)
T ss_dssp             HHHHHCTTCCEEEEEESSHH-HHHHHHHH------TTTSEEEEEECEEEETTEEEECCGGGCCC-------CSSCSCEEE
T ss_pred             hhhcccccccccceecccch-hhhhHHHH------hhcCccceeeccccCCCcchhhhhhhhcc-------CCceeEEEe
Confidence            44434345665555433321 11111122      34455555554433333455555555555       566666666


Q ss_pred             ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC--ChhhhcccCCeEEEecccccCc-ceeEEeecCc
Q psy5413         213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL--PLAEVCASVDTVMFCLSKGLGA-PVGSILAGPE  280 (285)
Q Consensus       213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~--~~~~~~~~~dv~~~s~sK~l~~-p~gg~~~~~~  280 (285)
                      .+|.| |...+   ++++.  ++.+++.+++|.+.+  ....-.+..|+.+.+.+|++++ |.+++++..+
T Consensus       147 ~~~~t-~~~~~---~~~i~--~~~~~~~v~vDa~~~~~~~~vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~  211 (360)
T d1bjna_         147 CPNET-IDGIA---IDETP--DFGADVVVAADFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVRED  211 (360)
T ss_dssp             CSEET-TTTEE---CCCCC--CCCTTCCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSSTTCEEEEEEGG
T ss_pred             ccccc-ccCcc---cccee--cccccceeeeeeeccccceeeeeccceeEEEEcccccccCCCceeEeeeh
Confidence            66666 56655   44443  577899999999977  2222346789999999999998 3344444333

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=98.85  E-value=5.8e-09  Score=92.13  Aligned_cols=161  Identities=17%  Similarity=0.144  Sum_probs=111.4

Q ss_pred             hhHHHHHHHHHhHcCCCcE-EEcCChHHHHHHHHHHcccc-CCCeEEecCCcceeeecccccccccccccccceeeeeee
Q psy5413         101 PTCKELQEKAAKLAGKEAA-IFVPSGTMGNLIAIMTHCDR-RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT  178 (285)
Q Consensus       101 ~~~~~l~~~la~~~g~~~~-~~~~~Gs~a~~~al~~~~~~-~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~  178 (285)
                      +...++++.|+++.|.+.+ +-...|++|...++.++... ..+.++++...|......     .+.+....|.+++.++
T Consensus       108 q~l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v-----~~t~a~~~g~~vv~v~  182 (437)
T d1wyua1         108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAV-----LRAYLEAVGAKLLTLP  182 (437)
T ss_dssp             HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHH-----HHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhh-----hhhhcccceeeEEeee
Confidence            3477999999999999987 66667777777776665543 345577777666543221     1122245689999988


Q ss_pred             cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhhh----c
Q psy5413         179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEV----C  254 (285)
Q Consensus       179 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~~----~  254 (285)
                      .++.. .+.++    +.+       ++++|++++|+..  |.+-+   ++++++++|+.|.++++|..-..+..+    .
T Consensus       183 ~~~~~-~~~~~----~~~-------~~Aavmi~~Pnt~--G~~ed---~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~  245 (437)
T d1wyua1         183 LEGGR-TPLPE----VGE-------EVGAVVVQNPNFL--GALED---LGPFAEAAHGAGALFVAVADPLSLGVLKPPGA  245 (437)
T ss_dssp             CBTTB-CCCCC----CCT-------TEEEEEEESSCTT--SBCCC---HHHHHHHHHHTTCEEEEECCTTGGGTBCCHHH
T ss_pred             ccccc-chhhh----hcc-------ceeEEEEcccccc--ccccc---hHHHHHHhhhccceEEeeechhhhhccccccc
Confidence            74333 22211    333       8999999999765  88877   999999999999998888664422222    2


Q ss_pred             ccCCeEEEecccc------cCcceeEEeecCccccc
Q psy5413         255 ASVDTVMFCLSKG------LGAPVGSILAGPEEFIQ  284 (285)
Q Consensus       255 ~~~dv~~~s~sK~------l~~p~gg~~~~~~~~i~  284 (285)
                      .++|+++.+ +|.      +|||.+|+++.++++++
T Consensus       246 ~GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~~~l~r  280 (437)
T d1wyua1         246 YGADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVR  280 (437)
T ss_dssp             HTCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGGG
T ss_pred             cccceEeec-cceeccccCCCcCccccccccchhhc
Confidence            489999777 554      44577889988887764

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.50  E-value=1.5e-06  Score=77.24  Aligned_cols=196  Identities=19%  Similarity=0.235  Sum_probs=123.0

Q ss_pred             eeeeccCCcCCCcHHHHHHHHhcccCCCCccC---C----hhHHHHHHHHHhHcCCCcE-EEcCChHHHHHHHHHHccc-
Q psy5413          68 TVDIRSDTISKPTMEMKNYMFNCEVGDDVYLE---D----PTCKELQEKAAKLAGKEAA-IFVPSGTMGNLIAIMTHCD-  138 (285)
Q Consensus        68 ~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~---~----~~~~~l~~~la~~~g~~~~-~~~~~Gs~a~~~al~~~~~-  138 (285)
                      ++.+.+.+ .+-.|.+.+.+.+......-|.+   +    +...|++..|++++|.+-+ .-...|+.|...|+.++.. 
T Consensus        67 ~~~lG~~~-~hy~P~v~~~~~~~~TaYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~  145 (471)
T d1wyub1          67 FYPLGSCT-MKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAY  145 (471)
T ss_dssp             CCCBTTTC-CCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHH
T ss_pred             ccCCcccc-CccCcchhhhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHH
Confidence            33344443 34467777776553333334432   1    3377999999999999965 3334455554444434321 


Q ss_pred             --cCCC----eEEe-cCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413         139 --RRDS----EIIV-GDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVE  211 (285)
Q Consensus       139 --~~g~----~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~  211 (285)
                        +++.    .+++ ....|.......         ...+..++.++....+..|.+.++.....       ++++++++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~a~v~v~  209 (471)
T d1wyub1         146 HEDRGEGRTRRVVLVPDSAHGSNPATA---------SMAGYQVREIPSGPEGEVDLEALKRELGP-------HVAALMLT  209 (471)
T ss_dssp             HHHTTCTTTCCEEEEETTSCTHHHHHH---------HHTTCEEEEECBCTTSSBCHHHHHHHCST-------TEEEEEEC
T ss_pred             hhhcccccccccccCCcccccceeeee---------ecccceeecccccccccccchhhhhhhhc-------cccceeec
Confidence              1222    1232 333332211111         22366777777766777899999988876       89999999


Q ss_pred             cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC----hh-hhcccCCeEEEeccccc------CcceeEEeecCc
Q psy5413         212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP----LA-EVCASVDTVMFCLSKGL------GAPVGSILAGPE  280 (285)
Q Consensus       212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~----~~-~~~~~~dv~~~s~sK~l------~~p~gg~~~~~~  280 (285)
                      +|++.  |.+.+  ..++++++++++|..+++|.+-..    +. .-..++|+++.+.++.|      |||..|+++.++
T Consensus       210 ~p~~~--g~~e~--~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~  285 (471)
T d1wyub1         210 NPNTL--GLFER--RILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKA  285 (471)
T ss_dssp             SSCTT--SCCCT--THHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECG
T ss_pred             cCCCc--ccccc--hhhhhHHHHHhccccccccccchhhhhhccccCcccccccccccccccccccccccccccceeehh
Confidence            99988  44433  288999999999999999987441    11 22257888888888855      447778888888


Q ss_pred             cccc
Q psy5413         281 EFIQ  284 (285)
Q Consensus       281 ~~i~  284 (285)
                      ++++
T Consensus       286 ~~~R  289 (471)
T d1wyub1         286 HLAP  289 (471)
T ss_dssp             GGGG
T ss_pred             hhhc
Confidence            8765