Psyllid ID: psy5414

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--
Protein Sequence
MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGKR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEHHHHHHHHHHHccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGKR
Flexible Loop (DISEMBL)
mvrisedlvrkraehndkeigtLEEIALHQEHIEKIEALDKWCKHLRILLlhsniisklgkr
Low Complexity Region (SEG)
MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGKR
Disordered region (IsUnstruct)
********************GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIIS*****
Disordered Region (DISOPRED)
**RIS*DLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL***
Disordered Region (DISEMBL)
MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGKR
Disordered Region (DISPRO)
*VRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	62	2.2.26 [Sep-21-2011]
Q28FY0	470	Protein TILB homolog OS=X	yes	N/A	0.951	0.125	0.610	4e-16
B3DH20	440	Protein TILB homolog OS=D	yes	N/A	0.951	0.134	0.593	9e-15
Q9VR52	395	Protein TILB OS=Drosophil	yes	N/A	0.951	0.149	0.610	1e-13
Q1RMR5	472	Protein TILB homolog OS=B	yes	N/A	0.951	0.125	0.559	2e-13
O88978	473	Protein TILB homolog OS=M	yes	N/A	0.951	0.124	0.559	2e-13
Q86X45	466	Protein TILB homolog OS=H	yes	N/A	0.951	0.126	0.542	3e-12
Q4R3F0	466	Protein TILB homolog OS=M	N/A	N/A	0.951	0.126	0.542	3e-12
Q9NJE9	383	Protein TILB homolog OS=T	N/A	N/A	0.951	0.154	0.491	2e-09

>sp|Q28FY0|TILB_XENTR Protein TILB homolog OS=Xenopus tropicalis GN=lrrc6 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 51/59 (86%)

Query: 1  MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
          MVR+SEDL+R+RAEHN+ EI +LEEI+LHQ+ +E+IE +DKWC+ L+IL L +N+I K+
Sbjct: 1  MVRVSEDLIRRRAEHNNCEIFSLEEISLHQQDLERIEYIDKWCRELKILYLQNNLIGKI 59

May play a crucial role in regulating cilia motility in pronephric tubules, cloaca and neural tube. May be required for establishing left-right asymmetry of the body plan; controls cell fate and convergent extension (CE) movements during gastrulation, respectively, via the Wnt and the planar cell polarity (PCP) signaling pathways. Required for the proper development of renal glomeruli and tubules.
Xenopus tropicalis (taxid: 8364)

>sp|B3DH20|TILB_DANRE Protein TILB homolog OS=Danio rerio GN=lrrc6 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 50/59 (84%)

Query: 1  MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
          MVRISEDL+R+RAEHN+ EI +LEE++LHQ+ I++IE + KWC+ L+IL L +N+I K+
Sbjct: 1  MVRISEDLIRRRAEHNNGEIFSLEELSLHQQDIQRIEHIHKWCRDLKILYLQNNLIPKI 59

Plays a crucial role in regulating cilia motility in pronephric tubules, cloaca and neural tube. Required for establishing left-right asymmetry of the body plan; controls cell fate and convergent extension (CE) movements during gastrulation, respectively, via the Wnt and the planar cell polarity (PCP) signaling pathways. Required for the proper development of renal glomeruli and tubules.

Danio rerio (taxid: 7955)

>sp|Q9VR52|TILB_DROME Protein TILB OS=Drosophila melanogaster GN=tilB PE=1 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 49/59 (83%)

Query: 1  MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
          MV I+E+LVRK++EHN++ I TLEEI+LHQE IE IE +  WC+ L+ILLL SN+I++L
Sbjct: 1  MVLITEELVRKKSEHNERLISTLEEISLHQEDIEVIEHIQNWCRDLKILLLQSNLIARL 59

Cilium-specific protein required for cilia structures in Johnston's sensory organ. Plays a role in motility of cilia and flagella.

Drosophila melanogaster (taxid: 7227)

>sp|Q1RMR5|TILB_BOVIN Protein TILB homolog OS=Bos taurus GN=LRRC6 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 48/59 (81%)

Query: 1  MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
          M RI+EDL+R+ AEHND  I +LEE++LHQ+ IE++E +DKWC+ L+IL L +N+I K+
Sbjct: 1  MGRITEDLIRRNAEHNDCVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKI 59

Plays a role in motility of cilia.

Bos taurus (taxid: 9913)

>sp|O88978|TILB_MOUSE Protein TILB homolog OS=Mus musculus GN=Lrrc6 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 48/59 (81%)

Query: 1  MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
          M RI+EDL+R+ AEHND  I +LEE++LHQ+ IE++E +DKWC+ L+IL L +N+I K+
Sbjct: 1  MGRITEDLIRRNAEHNDCVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKI 59

Plays a role in motility of cilia.

Mus musculus (taxid: 10090)

>sp|Q86X45|TILB_HUMAN Protein TILB homolog OS=Homo sapiens GN=LRRC6 PE=1 SV=3

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 47/59 (79%)

Query: 1  MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
          M  I+EDL+R+ AEHND  I +LEE++LHQ+ IE++E +DKWC+ L+IL L +N+I K+
Sbjct: 1  MGWITEDLIRRNAEHNDCVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKI 59

Plays a role in motility of cilia.

Homo sapiens (taxid: 9606)

>sp|Q4R3F0|TILB_MACFA Protein TILB homolog OS=Macaca fascicularis GN=LRCC6 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 47/59 (79%)

Query: 1  MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
          M  I+EDL+R+ AEHND  I +LEE++LHQ+ IE++E +DKWC+ L+IL L +N+I K+
Sbjct: 1  MGWITEDLIRRNAEHNDCVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKI 59

Plays a role in motility of cilia.

Macaca fascicularis (taxid: 9541)

>sp|Q9NJE9|TILB_TRYBB Protein TILB homolog OS=Trypanosoma brucei brucei GN=lrrc6 PE=3 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 43/59 (72%)

Query: 1  MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
          M RI+ DL+R+RAEHN+  +  L+E+ALHQ+ IE+IE +   C+ L IL L +N IS++
Sbjct: 1  MGRITTDLLRRRAEHNEGCLSNLKEVALHQQDIERIELIGDACRELEILYLCNNYISRI 59

Involved in the regulation of the cell cycle; is required for the basal body replication and new flagellum biogenesis.

Trypanosoma brucei brucei (taxid: 5702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	62
115774597	460	PREDICTED: protein TILB homolog [Strongy	0.951	0.128	0.694	5e-17
313245299	346	unnamed protein product [Oikopleura dioi	0.951	0.170	0.711	2e-15
313218365	296	unnamed protein product [Oikopleura dioi	0.951	0.199	0.711	3e-15
313225879	298	unnamed protein product [Oikopleura dioi	0.951	0.197	0.711	3e-15
118087383	465	PREDICTED: leucine-rich repeat-containin	0.951	0.126	0.661	3e-15
326918130	445	PREDICTED: leucine-rich repeat-containin	0.951	0.132	0.661	3e-15
350419152	447	PREDICTED: leucine-rich repeat-containin	0.951	0.131	0.694	4e-15
340708838	449	PREDICTED: leucine-rich repeat-containin	0.951	0.131	0.694	4e-15
221128471	429	PREDICTED: protein TILB homolog [Hydra m	0.951	0.137	0.677	6e-15
449495171	465	PREDICTED: protein TILB homolog [Taeniop	0.951	0.126	0.661	7e-15

>gi|115774597|ref|XP_791802.2| PREDICTED: protein TILB homolog [Strongylocentrotus purpuratus]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 52/59 (88%)

Query: 1  MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
          MVRI+ED+VRKR+EHN+ EI TLEEI+LHQ+ IE+IE LDKWC+HL+IL L SN+I K+
Sbjct: 1  MVRITEDMVRKRSEHNEMEISTLEEISLHQQDIERIEFLDKWCRHLKILYLQSNLIPKI 59

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|313245299|emb|CBY40071.1| unnamed protein product [Oikopleura dioica]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 51/59 (86%)

Query: 1  MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
          MV I+E+LVRKRAEHN+ EIG+LEE++LHQ  IEKIE +DKWCK L+IL LHSNII K+
Sbjct: 1  MVFITEELVRKRAEHNELEIGSLEELSLHQFDIEKIEHIDKWCKQLKILYLHSNIIFKI 59

Source: Oikopleura dioica

Species: Oikopleura dioica

Genus: Oikopleura

Family: Oikopleuridae

Class: Appendicularia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|313218365|emb|CBY41595.1| unnamed protein product [Oikopleura dioica]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 51/59 (86%)

Query: 1  MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
          MV I+E+LVRKRAEHN+ EIG+LEE++LHQ  IEKIE +DKWCK L+IL LHSNII K+
Sbjct: 1  MVFITEELVRKRAEHNELEIGSLEELSLHQFDIEKIEHIDKWCKQLKILYLHSNIIFKI 59

Source: Oikopleura dioica

Species: Oikopleura dioica

Genus: Oikopleura

Family: Oikopleuridae

Class: Appendicularia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|313225879|emb|CBY21022.1| unnamed protein product [Oikopleura dioica]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 51/59 (86%)

Query: 1  MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
          MV I+E+LVRKRAEHN+ EIG+LEE++LHQ  IEKIE +DKWCK L+IL LHSNII K+
Sbjct: 1  MVFITEELVRKRAEHNELEIGSLEELSLHQFDIEKIEHIDKWCKQLKILYLHSNIIFKI 59

Source: Oikopleura dioica

Species: Oikopleura dioica

Genus: Oikopleura

Family: Oikopleuridae

Class: Appendicularia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|118087383|ref|XP_418433.2| PREDICTED: leucine-rich repeat-containing protein 6 [Gallus gallus]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 51/59 (86%)

Query: 1  MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
          MVRI+EDLVR+RAEHN+ EI +LEEI+LHQ+ IEK+E LDKWC+ L+IL L +N+I K+
Sbjct: 1  MVRITEDLVRRRAEHNNCEIFSLEEISLHQQEIEKLEYLDKWCRDLKILYLQNNLIPKI 59

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326918130|ref|XP_003205344.1| PREDICTED: leucine-rich repeat-containing protein 6-like [Meleagris gallopavo]

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 51/59 (86%)

Query: 1  MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
          MVRI+EDLVR+RAEHN+ EI +LEEI+LHQ+ IEK+E LDKWC+ L+IL L +N+I K+
Sbjct: 1  MVRITEDLVRRRAEHNNCEIFSLEEISLHQQEIEKLEYLDKWCRDLKILYLQNNLIPKI 59

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|350419152|ref|XP_003492089.1| PREDICTED: leucine-rich repeat-containing protein 6-like [Bombus impatiens]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 52/59 (88%)

Query: 1  MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
          M RI+ DL+RKR+EHN+ EI TLEEIALHQE+IEKIE +D+ CKHL+ILLL +N+ISK+
Sbjct: 1  MSRITLDLLRKRSEHNEGEISTLEEIALHQENIEKIELIDRTCKHLKILLLQNNLISKI 59

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708838|ref|XP_003393026.1| PREDICTED: leucine-rich repeat-containing protein 6-like [Bombus terrestris]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 52/59 (88%)

Query: 1  MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
          M RI+ DL+RKR+EHN+ EI TLEEIALHQE+IEKIE +D+ CKHL+ILLL +N+ISK+
Sbjct: 1  MSRITLDLLRKRSEHNEGEISTLEEIALHQENIEKIELIDRTCKHLKILLLQNNLISKI 59

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221128471|ref|XP_002157387.1| PREDICTED: protein TILB homolog [Hydra magnipapillata]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 49/59 (83%)

Query: 1  MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
          MV I+EDLVRKRAEHN+ E+ TLEE++LHQ  IEKIE LDKWC+ +RIL L SN+I K+
Sbjct: 1  MVFITEDLVRKRAEHNNCELSTLEEVSLHQLDIEKIEYLDKWCREIRILYLQSNLIMKI 59

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|449495171|ref|XP_002187989.2| PREDICTED: protein TILB homolog [Taeniopygia guttata]

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 51/59 (86%)

Query: 1  MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
          MVRI+EDLVR+RAEHN+ EI +LEEI+LHQ+ IEK+E LDKWC+ L+IL L +N+I K+
Sbjct: 1  MVRITEDLVRRRAEHNNCEIFSLEEISLHQQEIEKLEHLDKWCRDLKILYLQNNLIPKI 59

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	62
ZFIN|ZDB-GENE-040827-2	440	lrrc6 "leucine rich repeat con	0.951	0.134	0.593	1.1e-14
FB|FBgn0014395	395	tilB "touch insensitive larva	0.951	0.149	0.610	1.7e-14
UNIPROTKB|F1NUJ0	476	LRRC6 "Uncharacterized protein	0.903	0.117	0.625	2.1e-14
RGD|1559937	306	Lrrc6 "leucine rich repeat con	0.951	0.192	0.542	5.1e-14
UNIPROTKB|Q1RMR5	472	LRRC6 "Protein TILB homolog" [	0.951	0.125	0.559	9.4e-14
MGI|MGI:1859553	473	Lrrc6 "leucine rich repeat con	0.951	0.124	0.559	9.5e-14
UNIPROTKB|F1RRU0	472	LRRC6 "Uncharacterized protein	0.951	0.125	0.559	2e-13
UNIPROTKB|Q86X45	466	LRRC6 "Protein TILB homolog" [	0.903	0.120	0.553	5.3e-13
UNIPROTKB|Q9NJE9	383	lrrc6 "Protein TILB homolog" [	0.951	0.154	0.491	1.1e-09

ZFIN|ZDB-GENE-040827-2 lrrc6 "leucine rich repeat containing 6" [Danio rerio (taxid:7955)]

 Score = 194 (73.4 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 35/59 (59%), Positives = 50/59 (84%)

Query:     1 MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
             MVRISEDL+R+RAEHN+ EI +LEE++LHQ+ I++IE + KWC+ L+IL L +N+I K+
Sbjct:     1 MVRISEDLIRRRAEHNNGEIFSLEELSLHQQDIQRIEHIHKWCRDLKILYLQNNLIPKI 59

GO:0060294 "cilium movement involved in cell motility" evidence=IMP

GO:0048793 "pronephros development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0001947 "heart looping" evidence=IMP

GO:0003143 "embryonic heart tube morphogenesis" evidence=IMP

GO:0003146 "heart jogging" evidence=IMP

GO:0060027 "convergent extension involved in gastrulation" evidence=IGI

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

GO:0005929 "cilium" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0042384 "cilium assembly" evidence=IMP

GO:0001539 "ciliary or flagellar motility" evidence=IMP

FB|FBgn0014395 tilB "touch insensitive larva B" [Drosophila melanogaster (taxid:7227)]

 Score = 191 (72.3 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 36/59 (61%), Positives = 49/59 (83%)

Query:     1 MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
             MV I+E+LVRK++EHN++ I TLEEI+LHQE IE IE +  WC+ L+ILLL SN+I++L
Sbjct:     1 MVLITEELVRKKSEHNERLISTLEEISLHQEDIEVIEHIQNWCRDLKILLLQSNLIARL 59

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0045433 "male courtship behavior, veined wing generated song production" evidence=IMP

GO:0010378 "temperature compensation of the circadian clock" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0035083 "cilium axoneme assembly" evidence=IMP

UNIPROTKB|F1NUJ0 LRRC6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 192 (72.6 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 35/56 (62%), Positives = 48/56 (85%)

Query:     4 ISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
             ++EDLVR+RAEHN+ EI +LEEI+LHQ+ IEK+E LDKWC+ L+IL L +N+I K+
Sbjct:     4 VTEDLVRRRAEHNNCEIFSLEEISLHQQEIEKLEYLDKWCRDLKILYLQNNLIPKI 59

GO:0000239 "pachytene" evidence=IEA

GO:0000240 "diplotene" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008584 "male gonad development" evidence=IEA

RGD|1559937 Lrrc6 "leucine rich repeat containing 6" [Rattus norvegicus (taxid:10116)]

 Score = 183 (69.5 bits), Expect = 5.1e-14, P = 5.1e-14
 Identities = 32/59 (54%), Positives = 49/59 (83%)

Query:     1 MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
             M RI+EDL+R+ AEHN+  I +LEE++LHQ+ IE++E +DKWC+ L+IL L +N+I+K+
Sbjct:     1 MGRITEDLIRRNAEHNECVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIAKI 59

GO:0003341 "cilium movement" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005929 "cilium" evidence=ISO

GO:0030317 "sperm motility" evidence=ISO

GO:0036158 "outer dynein arm assembly" evidence=ISO

GO:0036159 "inner dynein arm assembly" evidence=ISO

GO:0044458 "motile cilium assembly" evidence=ISO

GO:0060287 "epithelial cilium movement involved in determination of left/right asymmetry" evidence=ISO

GO:0061458 "reproductive system development" evidence=ISO

UNIPROTKB|Q1RMR5 LRRC6 "Protein TILB homolog" [Bos taurus (taxid:9913)]

 Score = 186 (70.5 bits), Expect = 9.4e-14, P = 9.4e-14
 Identities = 33/59 (55%), Positives = 48/59 (81%)

Query:     1 MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
             M RI+EDL+R+ AEHND  I +LEE++LHQ+ IE++E +DKWC+ L+IL L +N+I K+
Sbjct:     1 MGRITEDLIRRNAEHNDCVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKI 59

GO:0005929 "cilium" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008584 "male gonad development" evidence=IEA

GO:0000240 "diplotene" evidence=IEA

GO:0000239 "pachytene" evidence=IEA

MGI|MGI:1859553 Lrrc6 "leucine rich repeat containing 6 (testis)" [Mus musculus (taxid:10090)]

 Score = 186 (70.5 bits), Expect = 9.5e-14, P = 9.5e-14
 Identities = 33/59 (55%), Positives = 48/59 (81%)

Query:     1 MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
             M RI+EDL+R+ AEHND  I +LEE++LHQ+ IE++E +DKWC+ L+IL L +N+I K+
Sbjct:     1 MGRITEDLIRRNAEHNDCVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKI 59

GO:0003341 "cilium movement" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005929 "cilium" evidence=ISO

GO:0030317 "sperm motility" evidence=ISO

GO:0036158 "outer dynein arm assembly" evidence=ISO

GO:0036159 "inner dynein arm assembly" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0044458 "motile cilium assembly" evidence=ISO

GO:0060287 "epithelial cilium movement involved in determination of left/right asymmetry" evidence=ISO

GO:0061458 "reproductive system development" evidence=ISO

UNIPROTKB|F1RRU0 LRRC6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 183 (69.5 bits), Expect = 2.0e-13, P = 2.0e-13
 Identities = 33/59 (55%), Positives = 47/59 (79%)

Query:     1 MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
             M RI+EDL+R+ AEHND  I +LEE++LHQ+ IE++E +DKWC+ L+IL L +N I K+
Sbjct:     1 MGRITEDLIRRNAEHNDCIIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNFIGKI 59

GO:0008584 "male gonad development" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000240 "diplotene" evidence=IEA

GO:0000239 "pachytene" evidence=IEA

UNIPROTKB|Q86X45 LRRC6 "Protein TILB homolog" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 5.3e-13, P = 5.3e-13
 Identities = 31/56 (55%), Positives = 46/56 (82%)

Query:     4 ISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
             I+EDL+R+ AEHND  I +LEE++LHQ+ IE++E +DKWC+ L+IL L +N+I K+
Sbjct:     4 ITEDLIRRNAEHNDCVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKI 59

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0005929 "cilium" evidence=IDA

GO:0036158 "outer dynein arm assembly" evidence=IMP

GO:0060287 "epithelial cilium movement involved in determination of left/right asymmetry" evidence=IMP

GO:0044458 "motile cilium assembly" evidence=IMP

GO:0003341 "cilium movement" evidence=IMP

GO:0061458 "reproductive system development" evidence=IMP

GO:0030317 "sperm motility" evidence=IMP

GO:0036159 "inner dynein arm assembly" evidence=IMP

GO:0000239 "pachytene" evidence=ISS

GO:0000240 "diplotene" evidence=ISS

GO:0008584 "male gonad development" evidence=ISS

UNIPROTKB|Q9NJE9 lrrc6 "Protein TILB homolog" [Trypanosoma brucei brucei (taxid:5702)]

 Score = 147 (56.8 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 29/59 (49%), Positives = 43/59 (72%)

Query:     1 MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
             M RI+ DL+R+RAEHN+  +  L+E+ALHQ+ IE+IE +   C+ L IL L +N IS++
Sbjct:     1 MGRITTDLLRRRAEHNEGCLSNLKEVALHQQDIERIELIGDACRELEILYLCNNYISRI 59


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       62        62   0.00091  102 3  11 22  0.37    28
                                                     29  0.41    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  466 (50 KB)
  Total size of DFA:  85 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.69u 0.06s 8.75t   Elapsed:  00:00:06
  Total cpu time:  8.69u 0.06s 8.75t   Elapsed:  00:00:07
  Start:  Thu Aug 15 11:07:00 2013   End:  Thu Aug 15 11:07:07 2013

GO:0005737 "cytoplasm" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IDA

GO:0005932 "microtubule basal body" evidence=IDA

GO:0031514 "motile cilium" evidence=IDA

GO:0032054 "microtubule basal body duplication" evidence=IMP

GO:0043064 "flagellum organization" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q28FY0	TILB_XENTR	No assigned EC number	0.6101	0.9516	0.1255	yes	N/A
O88978	TILB_MOUSE	No assigned EC number	0.5593	0.9516	0.1247	yes	N/A
Q1RMR5	TILB_BOVIN	No assigned EC number	0.5593	0.9516	0.125	yes	N/A
Q9VR52	TILB_DROME	No assigned EC number	0.6101	0.9516	0.1493	yes	N/A
Q86X45	TILB_HUMAN	No assigned EC number	0.5423	0.9516	0.1266	yes	N/A
B3DH20	TILB_DANRE	No assigned EC number	0.5932	0.9516	0.1340	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	62
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.74
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	96.79
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.62
KOG0531|consensus	414		96.45
KOG1644|consensus	233		96.37
KOG2123|consensus	388		96.22
KOG0531|consensus	414		93.31
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	92.98
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	92.66
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.65
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	91.22
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	89.23
KOG4194|consensus	873		88.87
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.4
smart00370	26	LRR Leucine-rich repeats, outliers.	87.4
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	85.85
KOG1909|consensus	382		82.9
KOG1859|consensus	1096		82.75
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	82.46

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=5.5e-11  Score=81.14  Aligned_cols=59  Identities=32%  Similarity=0.466  Sum_probs=12.6

Q ss_pred             CchhhHHHHHhhcccccccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccccC
Q psy5414           1 MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGK   61 (62)
Q Consensus         1 MvriT~eLirkraEhn~~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kien   61 (62)
                      |||+|.++|++.+.++...  .+.+++|+.-.|.+||.++..+.+|+.|+|++|.|++||+
T Consensus         1 ~~~lt~~~i~~~~~~~n~~--~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~   59 (175)
T PF14580_consen    1 MVRLTANMIEQIAQYNNPV--KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG   59 (175)
T ss_dssp             -------------------------------------S--TT-TT--EEE-TTS--S--TT
T ss_pred             Ccccccccccccccccccc--ccccccccccccccccchhhhhcCCCEEECCCCCCccccC
Confidence            9999999999999999987  7899999999999999999668999999999999999986

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.74  E-value=2.7e-06  Score=46.64  Aligned_cols=40  Identities=30%  Similarity=0.390  Sum_probs=34.3

Q ss_pred             cchhhhhcchhhHHhHHh-HHHhcchhhhhhhhcCCcccccC
Q psy5414          21 GTLEEIALHQEHIEKIEA-LDKWCKHLRILLLHSNIISKLGK   61 (62)
Q Consensus        21 ~~Leel~lhq~~Ie~Ie~-l~~~CrnLkiLyLQnN~I~kien   61 (62)
                      .+|++++|+.-.|..|.. ++ .|++|+.|+|++|.|+.|+.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~-~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELS-NLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGT-TCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHh-CCCCCCEEEecCCCCCCCcC
Confidence            368999999999999987 88 89999999999999998763

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=96.79  E-value=0.00028  Score=36.13  Aligned_cols=18  Identities=33%  Similarity=0.349  Sum_probs=16.6

Q ss_pred             chhhhhhhhcCCcccccC
Q psy5414          44 KHLRILLLHSNIISKLGK   61 (62)
Q Consensus        44 rnLkiLyLQnN~I~kien   61 (62)
                      .+|+.|||..|.|++|||
T Consensus         2 ~~L~~L~L~~NkI~~IEn   19 (26)
T smart00365        2 TNLEELDLSQNKIKKIEN   19 (26)
T ss_pred             CccCEEECCCCccceecC
Confidence            478999999999999997

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.62  E-value=0.00028  Score=48.26  Aligned_cols=40  Identities=33%  Similarity=0.424  Sum_probs=11.6

Q ss_pred             cccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414          19 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        19 ~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      .+.+|+.++|+.-.|.+|+.+. .+++|+.|+|.+|.|+.|
T Consensus        40 ~l~~L~~L~Ls~N~I~~l~~l~-~L~~L~~L~L~~N~I~~i   79 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQITKLEGLP-GLPRLKTLDLSNNRISSI   79 (175)
T ss_dssp             T-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-
T ss_pred             hhcCCCEEECCCCCCccccCcc-ChhhhhhcccCCCCCCcc
Confidence            4455556666666666665555 455555555555555554

>KOG0531|consensus

Probab=96.45  E-value=0.00075  Score=49.37  Aligned_cols=47  Identities=34%  Similarity=0.383  Sum_probs=41.1

Q ss_pred             ccccccccchhhhhcchhhHHhHHh-HHHhcchhhhhhhhcCCcccccC
Q psy5414          14 EHNDKEIGTLEEIALHQEHIEKIEA-LDKWCKHLRILLLHSNIISKLGK   61 (62)
Q Consensus        14 Ehn~~~l~~Leel~lhq~~Ie~Ie~-l~~~CrnLkiLyLQnN~I~kien   61 (62)
                      ++.-+.+.+|+.++|++-.|++|+. ++ .|.+|++|.|.+|.|++|++
T Consensus        88 ~~~l~~~~~l~~l~l~~n~i~~i~~~l~-~~~~L~~L~ls~N~I~~i~~  135 (414)
T KOG0531|consen   88 LNHLSKLKSLEALDLYDNKIEKIENLLS-SLVNLQVLDLSFNKITKLEG  135 (414)
T ss_pred             hcccccccceeeeeccccchhhcccchh-hhhcchheeccccccccccc
Confidence            4446778899999999999999999 77 99999999999999999874

>KOG1644|consensus

Probab=96.37  E-value=0.00081  Score=49.56  Aligned_cols=60  Identities=23%  Similarity=0.467  Sum_probs=44.1

Q ss_pred             CchhhHHHHHhh---------------------cccccccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414           1 MVRISEDLVRKR---------------------AEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus         1 MvriT~eLirkr---------------------aEhn~~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      |||+|.+++.+.                     +|--...+.....+.|.+-+|-+++++. .=++|.-|+|.||.|..|
T Consensus         1 m~klt~el~~q~pqy~~~~~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp-~l~rL~tLll~nNrIt~I   79 (233)
T KOG1644|consen    1 MVKLTAELIVQAPQYINSVRERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLP-HLPRLHTLLLNNNRITRI   79 (233)
T ss_pred             CccccHHHHhhchhhhhhccccccccccccccchhhccccccccceecccccchhhcccCC-CccccceEEecCCcceee
Confidence            899999999855                     2333333445667788888888887777 667788888888888887


Q ss_pred             cC
Q psy5414          60 GK   61 (62)
Q Consensus        60 en   61 (62)
                      ++
T Consensus        80 ~p   81 (233)
T KOG1644|consen   80 DP   81 (233)
T ss_pred             cc
Confidence            65

>KOG2123|consensus

Probab=96.22  E-value=0.0017  Score=50.57  Aligned_cols=59  Identities=31%  Similarity=0.497  Sum_probs=48.0

Q ss_pred             CchhhHHHHHhhcccc--------------------cccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccccc
Q psy5414           1 MVRISEDLVRKRAEHN--------------------DKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG   60 (62)
Q Consensus         1 MvriT~eLirkraEhn--------------------~~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kie   60 (62)
                      |+++|+.++--||.--                    =.....||-|+|+=-.|-.++-+. -|.+||-|||--|.|+.+.
T Consensus         1 M~kLTe~mV~~raK~sdl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~-rCtrLkElYLRkN~I~sld   79 (388)
T KOG2123|consen    1 MVKLTESMVYIRAKCSDLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQ-RCTRLKELYLRKNCIESLD   79 (388)
T ss_pred             CchHHHHHHHHHHHhhHHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHH-HHHHHHHHHHHhcccccHH
Confidence            8999999987552211                    123567899999999999999999 9999999999999998763

>KOG0531|consensus

Probab=93.31  E-value=0.023  Score=41.62  Aligned_cols=44  Identities=27%  Similarity=0.317  Sum_probs=38.7

Q ss_pred             cccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccccC
Q psy5414          17 DKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGK   61 (62)
Q Consensus        17 ~~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kien   61 (62)
                      ...+.+|++++++.-.|.+|+.++ .+..|+-||+.+|.|+++++
T Consensus       114 l~~~~~L~~L~ls~N~I~~i~~l~-~l~~L~~L~l~~N~i~~~~~  157 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITKLEGLS-TLTLLKELNLSGNLISDISG  157 (414)
T ss_pred             hhhhhcchheeccccccccccchh-hccchhhheeccCcchhccC
Confidence            567889999999999999999999 66669999999999998875

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=92.98  E-value=0.0039  Score=34.34  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=16.0

Q ss_pred             ccchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCC
Q psy5414          20 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNI   55 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~   55 (62)
                      +..|++++++.-.|..|..  +. .|++|+.|+|++|.
T Consensus        24 l~~L~~L~l~~N~l~~i~~~~f~-~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   24 LPNLETLDLSNNNLTSIPPDAFS-NLPNLRYLDLSNNN   60 (61)
T ss_dssp             GTTESEEEETSSSESEEETTTTT-TSTTESEEEETSSS
T ss_pred             CCCCCEeEccCCccCccCHHHHc-CCCCCCEEeCcCCc
Confidence            3444444555444444431  22 44455555555544

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=92.66  E-value=0.0049  Score=33.94  Aligned_cols=39  Identities=21%  Similarity=0.324  Sum_probs=32.3

Q ss_pred             chhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCcccccC
Q psy5414          22 TLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLGK   61 (62)
Q Consensus        22 ~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~kien   61 (62)
                      +|+.+.++.=.|..|.  .++ .+++|+.|+|++|.|..|+.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~-~l~~L~~L~l~~N~l~~i~~   42 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFS-NLPNLETLDLSNNNLTSIPP   42 (61)
T ss_dssp             TESEEEETSSTESEECTTTTT-TGTTESEEEETSSSESEEET
T ss_pred             cCcEEECCCCCCCccCHHHHc-CCCCCCEeEccCCccCccCH
Confidence            5778888888888885  345 78999999999999998763

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.65  E-value=0.034  Score=26.33  Aligned_cols=16  Identities=31%  Similarity=0.318  Sum_probs=11.5

Q ss_pred             cchhhhhhhhcCCccc
Q psy5414          43 CKHLRILLLHSNIISK   58 (62)
Q Consensus        43 CrnLkiLyLQnN~I~k   58 (62)
                      |++|+.|.|++|.|+.
T Consensus         1 ~~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    1 NPNLETLDLSNNQITD   16 (24)
T ss_dssp             -TT-SEEE-TSSBEHH
T ss_pred             CCCCCEEEccCCcCCH
Confidence            7899999999999864

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=91.22  E-value=0.064  Score=38.05  Aligned_cols=38  Identities=32%  Similarity=0.361  Sum_probs=30.5

Q ss_pred             chhhhhcchhhHHhH-HhHHHhcchhhhhhhhcCCccccc
Q psy5414          22 TLEEIALHQEHIEKI-EALDKWCKHLRILLLHSNIISKLG   60 (62)
Q Consensus        22 ~Leel~lhq~~Ie~I-e~l~~~CrnLkiLyLQnN~I~kie   60 (62)
                      .|+++++++-.|..+ +.+. .|++|+.|.+++|.|+.+.
T Consensus       141 nL~~L~l~~N~i~~l~~~~~-~l~~L~~L~l~~N~l~~l~  179 (394)
T COG4886         141 NLKELDLSDNKIESLPSPLR-NLPNLKNLDLSFNDLSDLP  179 (394)
T ss_pred             hcccccccccchhhhhhhhh-ccccccccccCCchhhhhh
Confidence            788888888888888 5777 8888888888888887654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=89.23  E-value=0.062  Score=25.43  Aligned_cols=16  Identities=25%  Similarity=0.328  Sum_probs=13.6

Q ss_pred             hhhhhhhhcCCccccc
Q psy5414          45 HLRILLLHSNIISKLG   60 (62)
Q Consensus        45 nLkiLyLQnN~I~kie   60 (62)
                      +|++|+|.+|.|+.|.
T Consensus         1 ~L~~Ldls~n~l~~ip   16 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIP   16 (22)
T ss_dssp             TESEEEETSSEESEEG
T ss_pred             CccEEECCCCcCEeCC
Confidence            5889999999998764

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4194|consensus

Probab=88.87  E-value=0.11  Score=43.96  Aligned_cols=45  Identities=29%  Similarity=0.437  Sum_probs=36.7

Q ss_pred             cccccc---cchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCccccc
Q psy5414          15 HNDKEI---GTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLG   60 (62)
Q Consensus        15 hn~~~l---~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~kie   60 (62)
                      -|+|.+   .+|++++||+-.|++|+  .-+ .|..|+.|.|.+|.|.++.
T Consensus       284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-ftqkL~~LdLs~N~i~~l~  333 (873)
T KOG4194|consen  284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-FTQKLKELDLSSNRITRLD  333 (873)
T ss_pred             hhcccccccchhhhhccchhhhheeecchhh-hcccceeEeccccccccCC
Confidence            355554   46788999999999996  355 7999999999999998764

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.40  E-value=0.14  Score=24.45  Aligned_cols=17  Identities=41%  Similarity=0.407  Sum_probs=14.4

Q ss_pred             chhhhhhhhcCCccccc
Q psy5414          44 KHLRILLLHSNIISKLG   60 (62)
Q Consensus        44 rnLkiLyLQnN~I~kie   60 (62)
                      .+|+.|||.+|.|+.|.
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00369        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            47899999999998774

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.40  E-value=0.14  Score=24.45  Aligned_cols=17  Identities=41%  Similarity=0.407  Sum_probs=14.4

Q ss_pred             chhhhhhhhcCCccccc
Q psy5414          44 KHLRILLLHSNIISKLG   60 (62)
Q Consensus        44 rnLkiLyLQnN~I~kie   60 (62)
                      .+|+.|||.+|.|+.|.
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00370        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            47899999999998774

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=85.85  E-value=0.17  Score=23.08  Aligned_cols=16  Identities=38%  Similarity=0.484  Sum_probs=10.3

Q ss_pred             chhhhhhhhcCCcccc
Q psy5414          44 KHLRILLLHSNIISKL   59 (62)
Q Consensus        44 rnLkiLyLQnN~I~ki   59 (62)
                      .+|+.|+|.+|.+..+
T Consensus         1 ~~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSL   16 (17)
T ss_dssp             TT-SEEEETSS--SSE
T ss_pred             CccCEEECCCCCCCCC
Confidence            4789999999987653

...

>KOG1909|consensus

Probab=82.90  E-value=0.9  Score=35.76  Aligned_cols=38  Identities=24%  Similarity=0.323  Sum_probs=29.6

Q ss_pred             chhhhhcc-----hhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414          22 TLEEIALH-----QEHIEKIEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        22 ~Leel~lh-----q~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      .|+.|+||     .+.++..+.+=.-|-+|++|||.||-+++.
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~  135 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPE  135 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChh
Confidence            45555554     578888886555799999999999998875

>KOG1859|consensus

Probab=82.75  E-value=0.59  Score=40.62  Aligned_cols=41  Identities=22%  Similarity=0.340  Sum_probs=36.9

Q ss_pred             ccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414          18 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        18 ~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      +++.-|++++|+--...+..+|- ||.+||||.|.-|...++
T Consensus       184 qll~ale~LnLshNk~~~v~~Lr-~l~~LkhLDlsyN~L~~v  224 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKVDNLR-RLPKLKHLDLSYNCLRHV  224 (1096)
T ss_pred             HHHHHhhhhccchhhhhhhHHHH-hcccccccccccchhccc
Confidence            56788999999999999999998 999999999999987654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=82.46  E-value=0.57  Score=33.25  Aligned_cols=46  Identities=22%  Similarity=0.213  Sum_probs=39.9

Q ss_pred             ccccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccccC
Q psy5414          16 NDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGK   61 (62)
Q Consensus        16 n~~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kien   61 (62)
                      .-+.+.+|+.+.|++-.|..+........+|+.|++++|.|+.|..
T Consensus       158 ~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~  203 (394)
T COG4886         158 PLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPP  203 (394)
T ss_pred             hhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCch
Confidence            4577889999999999999998776578999999999999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-08

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 2e-08
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 1  MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
          MV+++ +L+ + A++ +       E+ L    I  IE L         +    N I KL
Sbjct: 1  MVKLTAELIEQAAQYTN--AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL 57

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 5e-08
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 6  EDLVRKRAEHNDKEIGTLEEIALHQEH--IEKIEALDKWCKHLRILLLHSNIISKL 59
          +D +R   E         E++ LH     IEK++A     K  + L L +N I K+
Sbjct: 8  KDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.01
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	92.99
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	92.52
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	92.4
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	92.22
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	92.17
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	91.92
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	91.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	91.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	91.51
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	91.48
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	91.4
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	90.98
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	90.97
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	90.62
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	90.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	90.07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	89.92
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	89.83
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	89.19
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	89.02
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	88.91
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	88.57
3e6j_A	229	Variable lymphocyte receptor diversity region; var	88.31
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	88.31
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	87.95
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	87.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	87.31
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	87.12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	87.02
3e6j_A	229	Variable lymphocyte receptor diversity region; var	86.94
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	86.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	86.59
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	86.4
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	86.29
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	86.22
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	85.86
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	85.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	85.27
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	85.22
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	85.08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	85.04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	84.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	84.8
3m19_A	251	Variable lymphocyte receptor A diversity region; a	84.56
1o6v_A	466	Internalin A; bacterial infection, extracellular r	84.51
1o6v_A	466	Internalin A; bacterial infection, extracellular r	84.47
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	84.44
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	84.26
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	84.0
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	84.0
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	83.56
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	83.55
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	82.97
3m19_A	251	Variable lymphocyte receptor A diversity region; a	82.63
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	82.5
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	82.43
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	82.39
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	82.35
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	82.32
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	81.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	81.3
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	81.07
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	80.84
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	80.64
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	80.61
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	80.53
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	80.43
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	80.37
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	80.14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	80.14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	80.04

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.01  E-value=2.3e-07  Score=57.41  Aligned_cols=57  Identities=25%  Similarity=0.308  Sum_probs=46.3

Q ss_pred             CchhhHHHHHhhcccccccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414           1 MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus         1 MvriT~eLirkraEhn~~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      |||+|.++|++.+..-  -..+|++++|+.-.|..|+.+..++++|+.|+|.+|.|+.+
T Consensus         1 m~~lt~~~i~~~~~~~--~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~   57 (176)
T 1a9n_A            1 MVKLTAELIEQAAQYT--NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL   57 (176)
T ss_dssp             -CCCCHHHHHTSCEEE--CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE
T ss_pred             CccccHHHHHHHHhcC--CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc
Confidence            9999999999876543  36788899999888888887876777899999999988765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=92.99  E-value=0.008  Score=35.45  Aligned_cols=14  Identities=21%  Similarity=0.221  Sum_probs=5.8

Q ss_pred             cchhhhhhhhcCCc
Q psy5414          43 CKHLRILLLHSNII   56 (62)
Q Consensus        43 CrnLkiLyLQnN~I   56 (62)
                      |++|+.|+|.+|.|
T Consensus       112 l~~L~~L~l~~N~l  125 (149)
T 2je0_A          112 LENLKSLDLFNCEV  125 (149)
T ss_dssp             CTTCCEEECTTCGG
T ss_pred             CCCCCEEeCcCCcc
Confidence            33444444444433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=92.52  E-value=0.0052  Score=38.22  Aligned_cols=38  Identities=18%  Similarity=0.210  Sum_probs=20.1

Q ss_pred             ccchhhhhcchhh-HHhHHhHHHhcchhhhhhhhcCCccc
Q psy5414          20 IGTLEEIALHQEH-IEKIEALDKWCKHLRILLLHSNIISK   58 (62)
Q Consensus        20 l~~Leel~lhq~~-Ie~Ie~l~~~CrnLkiLyLQnN~I~k   58 (62)
                      +.+|++++|+.-. |..+..+. .|++|+.|+|.+|.|+.
T Consensus       135 l~~L~~L~L~~n~~i~~~~~l~-~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          135 LPKVNSIDLSYNGAITDIMPLK-TLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             CSSCCEEECCSCTBCCCCGGGG-GCSSCCEEECTTBCCCC
T ss_pred             CCCCCEEEccCCCCccccHhhc-CCCCCCEEECCCCCCcC
Confidence            3455555555544 55554444 45555555555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=92.40  E-value=0.0076  Score=36.22  Aligned_cols=38  Identities=21%  Similarity=0.273  Sum_probs=17.5

Q ss_pred             cchhhhhcchhhHHh-HHhHHHhcchhhhhhhhcCCccc
Q psy5414          21 GTLEEIALHQEHIEK-IEALDKWCKHLRILLLHSNIISK   58 (62)
Q Consensus        21 ~~Leel~lhq~~Ie~-Ie~l~~~CrnLkiLyLQnN~I~k   58 (62)
                      .+|++++|+.-.|.. +..+...|++|+.|+|.+|.|+.
T Consensus        71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  109 (168)
T 2ell_A           71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD  109 (168)
T ss_dssp             SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS
T ss_pred             CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc
Confidence            344444554444444 33333235555555555555443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=92.22  E-value=0.0071  Score=39.78  Aligned_cols=39  Identities=21%  Similarity=0.382  Sum_probs=22.0

Q ss_pred             ccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414          20 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      +.+|++++++.-.|..++.++ .+++|+.|+|.+|.|+.+
T Consensus        40 l~~L~~L~l~~n~i~~l~~l~-~l~~L~~L~L~~N~i~~~   78 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQSLAGMQ-FFTNLKELHLSHNQISDL   78 (263)
T ss_dssp             HTTCSEEECTTSCCCCCTTGG-GCTTCCEEECCSSCCCCC
T ss_pred             cCcCcEEECcCCCcccchHHh-hCCCCCEEECCCCccCCC
Confidence            455555566655555555554 455666666666655543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=92.17  E-value=0.012  Score=40.83  Aligned_cols=41  Identities=20%  Similarity=0.289  Sum_probs=31.3

Q ss_pred             ccchhhhhcchhhHHhHHhH---HHhcchhhhhhhhcCCccccc
Q psy5414          20 IGTLEEIALHQEHIEKIEAL---DKWCKHLRILLLHSNIISKLG   60 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~Ie~l---~~~CrnLkiLyLQnN~I~kie   60 (62)
                      +..|+.|+|+.-.|..|..+   -..|++|+.|+|++|.|+.++
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~  212 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER  212 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch
Confidence            55788888888888776543   247889999999999888653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=91.92  E-value=0.011  Score=34.84  Aligned_cols=42  Identities=26%  Similarity=0.466  Sum_probs=34.7

Q ss_pred             ccccchhhhhcchhhHHh-HHhHHHhcchhhhhhhhcCCcccc
Q psy5414          18 KEIGTLEEIALHQEHIEK-IEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        18 ~~l~~Leel~lhq~~Ie~-Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      +.+.+|+.++|+.-.|.. +...-..|++|+.|+|.+|.|+.+
T Consensus        61 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~  103 (149)
T 2je0_A           61 PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL  103 (149)
T ss_dssp             CCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSH
T ss_pred             hcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCCh
Confidence            346789999999988888 766655799999999999998764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=91.79  E-value=0.0081  Score=39.55  Aligned_cols=40  Identities=20%  Similarity=0.483  Sum_probs=30.1

Q ss_pred             cccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414          19 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        19 ~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      .+.+|++++++...|..+..++ .|++|+.|+|.+|.|+.+
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~~~-~~~~L~~L~l~~n~i~~~   81 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQGIE-YLTNLEYLNLNGNQITDI   81 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTTGG-GCTTCCEEECCSSCCCCC
T ss_pred             hcccccEEEEeCCccccchhhh-hcCCccEEEccCCccccc
Confidence            5677778888877777777776 678888888888777654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=91.66  E-value=0.0084  Score=39.89  Aligned_cols=41  Identities=15%  Similarity=0.478  Sum_probs=29.4

Q ss_pred             ccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414          18 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        18 ~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      ..+.+|++++++.-.|..++.++ .|++|+.|+|.+|.|+.+
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~~~~-~l~~L~~L~L~~n~l~~~   83 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQGIQ-YLPNVTKLFLNGNKLTDI   83 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGG-GCTTCCEEECCSSCCCCC
T ss_pred             hhcCcccEEEccCCCcccChhHh-cCCCCCEEEccCCccCCC
Confidence            34667777777777777776666 677777777777777654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=91.51  E-value=0.012  Score=38.64  Aligned_cols=39  Identities=26%  Similarity=0.454  Sum_probs=21.3

Q ss_pred             ccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414          20 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      +.+|++++|+.-.|..+..++ .|++|+.|+|.+|.|+.+
T Consensus       127 l~~L~~L~Ls~N~i~~~~~l~-~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          127 LKNLEILSIRNNKLKSIVMLG-FLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CTTCCEEECTTSCCCBCGGGG-GCTTCCEEECTTSCCCBC
T ss_pred             cccccEEECCCCcCCCChHHc-cCCCCCEEECCCCcCcch
Confidence            445555555555555555444 455566666666655543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=91.48  E-value=0.011  Score=36.72  Aligned_cols=35  Identities=9%  Similarity=0.132  Sum_probs=16.5

Q ss_pred             ccchhhhhcchhhHHh--HHhHHHhcchhhhhhhhcCC
Q psy5414          20 IGTLEEIALHQEHIEK--IEALDKWCKHLRILLLHSNI   55 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~--Ie~l~~~CrnLkiLyLQnN~   55 (62)
                      +.+|++++|+.-.|..  ...++ .|++|+.|+|.+|.
T Consensus       111 l~~L~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~  147 (197)
T 4ezg_A          111 LTSLTLLDISHSAHDDSILTKIN-TLPKVNSIDLSYNG  147 (197)
T ss_dssp             CTTCCEEECCSSBCBGGGHHHHT-TCSSCCEEECCSCT
T ss_pred             CCCCCEEEecCCccCcHhHHHHh-hCCCCCEEEccCCC
Confidence            3445555555444443  33343 44555555555554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=91.40  E-value=0.012  Score=38.32  Aligned_cols=38  Identities=18%  Similarity=0.469  Sum_probs=18.2

Q ss_pred             cccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcc
Q psy5414          19 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIIS   57 (62)
Q Consensus        19 ~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~   57 (62)
                      .+.+|+++.++.-.|..+..++ .|++|+.|+|.+|.|+
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~l~-~l~~L~~L~l~~n~l~   76 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQGIQ-YLPNVRYLALGGNKLH   76 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGG-GCTTCCEEECTTSCCC
T ss_pred             cccceeeeeeCCCCcccccccc-cCCCCcEEECCCCCCC
Confidence            3444445555544444444444 4455555555544444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=90.98  E-value=0.0082  Score=37.34  Aligned_cols=37  Identities=27%  Similarity=0.460  Sum_probs=19.3

Q ss_pred             cchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccc
Q psy5414          21 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK   58 (62)
Q Consensus        21 ~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~k   58 (62)
                      .+|++++|+.-.|..+..++ .|++|+.|+|.+|.|+.
T Consensus        93 ~~L~~L~L~~N~l~~l~~~~-~l~~L~~L~l~~N~i~~  129 (198)
T 1ds9_A           93 DTLEELWISYNQIASLSGIE-KLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             HHCSEEEEEEEECCCHHHHH-HHHHSSEEEESEEECCC
T ss_pred             CcCCEEECcCCcCCcCCccc-cCCCCCEEECCCCcCCc
Confidence            44555555555555554444 45555555555555543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=90.97  E-value=0.012  Score=38.33  Aligned_cols=42  Identities=24%  Similarity=0.319  Sum_probs=36.4

Q ss_pred             ccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccccc
Q psy5414          18 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG   60 (62)
Q Consensus        18 ~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kie   60 (62)
                      +.+.+|++++|+.-.|..+..++ .|++|+.|+|.+|.|+.+.
T Consensus        60 ~~l~~L~~L~l~~n~l~~~~~l~-~l~~L~~L~L~~n~l~~~~  101 (272)
T 3rfs_A           60 QYLPNVRYLALGGNKLHDISALK-ELTNLTYLILTGNQLQSLP  101 (272)
T ss_dssp             GGCTTCCEEECTTSCCCCCGGGT-TCTTCCEEECTTSCCCCCC
T ss_pred             ccCCCCcEEECCCCCCCCchhhc-CCCCCCEEECCCCccCccC
Confidence            45788999999998888888787 8999999999999988754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=90.62  E-value=0.016  Score=38.57  Aligned_cols=10  Identities=40%  Similarity=0.504  Sum_probs=3.6

Q ss_pred             hhhhhhhhcC
Q psy5414          45 HLRILLLHSN   54 (62)
Q Consensus        45 nLkiLyLQnN   54 (62)
                      +|+.|+|.+|
T Consensus       135 ~L~~L~l~~n  144 (291)
T 1h6t_A          135 QLESLYLGNN  144 (291)
T ss_dssp             TCCEEECCSS
T ss_pred             CCCEEEccCC
Confidence            3333333333

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=90.43  E-value=0.013  Score=39.21  Aligned_cols=40  Identities=20%  Similarity=0.343  Sum_probs=28.5

Q ss_pred             cccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414          19 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        19 ~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      .+.+|++++++.-.|..+..+. .|++|+.|+|.+|.|+.+
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~~~-~l~~L~~L~L~~n~i~~~   78 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIEGVQ-YLNNLIGLELKDNQITDL   78 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGG-GCTTCCEEECCSSCCCCC
T ss_pred             HcCCcCEEEeeCCCccCchhhh-ccCCCCEEEccCCcCCCC
Confidence            4667777777777777776666 677777777777777654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=90.07  E-value=0.0082  Score=37.35  Aligned_cols=37  Identities=41%  Similarity=0.538  Sum_probs=18.8

Q ss_pred             cchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccc
Q psy5414          21 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK   58 (62)
Q Consensus        21 ~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~k   58 (62)
                      .+|++++|+.-.|..|..+. .|++|+.|+|.+|.|+.
T Consensus        48 ~~L~~L~ls~n~l~~l~~~~-~l~~L~~L~l~~n~l~~   84 (198)
T 1ds9_A           48 KACKHLALSTNNIEKISSLS-GMENLRILSLGRNLIKK   84 (198)
T ss_dssp             TTCSEEECSEEEESCCCCHH-HHTTCCEEEEEEEEECS
T ss_pred             CCCCEEECCCCCCccccccc-cCCCCCEEECCCCCccc
Confidence            34555555555554444444 44555555555555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=89.92  E-value=0.021  Score=34.88  Aligned_cols=38  Identities=21%  Similarity=0.303  Sum_probs=17.7

Q ss_pred             ccchhhhhcchhhHHhHHh---HHHhcchhhhhhhhcCCccc
Q psy5414          20 IGTLEEIALHQEHIEKIEA---LDKWCKHLRILLLHSNIISK   58 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~Ie~---l~~~CrnLkiLyLQnN~I~k   58 (62)
                      +.+|++++|+.-.|..+..   +. .|++|+.|+|.+|.|+.
T Consensus        87 l~~L~~L~L~~N~i~~~~~~~~l~-~l~~L~~L~l~~N~i~~  127 (176)
T 1a9n_A           87 LPDLTELILTNNSLVELGDLDPLA-SLKSLTYLCILRNPVTN  127 (176)
T ss_dssp             CTTCCEEECCSCCCCCGGGGGGGG-GCTTCCEEECCSSGGGG
T ss_pred             CCCCCEEECCCCcCCcchhhHhhh-cCCCCCEEEecCCCCCC
Confidence            3445555555444443332   32 34555555555555543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=89.83  E-value=0.019  Score=37.77  Aligned_cols=40  Identities=25%  Similarity=0.325  Sum_probs=22.2

Q ss_pred             cccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414          19 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        19 ~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      .+.+|++++|+.-.|..+..+. .|++|+.|+|.+|.|+.+
T Consensus        64 ~~~~L~~L~l~~n~i~~~~~~~-~l~~L~~L~L~~n~i~~~  103 (347)
T 4fmz_A           64 YLTNLEYLNLNGNQITDISPLS-NLVKLTNLYIGTNKITDI  103 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGT-TCTTCCEEECCSSCCCCC
T ss_pred             hcCCccEEEccCCccccchhhh-cCCcCCEEEccCCcccCc
Confidence            3455666666655555555444 555666666666555443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=89.19  E-value=0.015  Score=40.40  Aligned_cols=14  Identities=43%  Similarity=0.570  Sum_probs=5.7

Q ss_pred             cchhhhhhhhcCCc
Q psy5414          43 CKHLRILLLHSNII   56 (62)
Q Consensus        43 CrnLkiLyLQnN~I   56 (62)
                      |++|+.|+|.+|.|
T Consensus        99 L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           99 LSHLSTLILTGNPI  112 (635)
T ss_dssp             CTTCCEEECTTCCC
T ss_pred             CCCCCEEEccCCcC
Confidence            33444444444433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=89.02  E-value=0.023  Score=35.79  Aligned_cols=37  Identities=30%  Similarity=0.415  Sum_probs=17.8

Q ss_pred             chhhhhcchhhHHhH-HhHHHhcchhhhhhhhcCCcccc
Q psy5414          22 TLEEIALHQEHIEKI-EALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        22 ~Leel~lhq~~Ie~I-e~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      +|++++|+.-.|..| +.++ .+++|+.|+|++|.|+.+
T Consensus        32 ~l~~L~L~~n~i~~ip~~~~-~l~~L~~L~Ls~N~i~~i   69 (193)
T 2wfh_A           32 DVTELYLDGNQFTLVPKELS-NYKHLTLIDLSNNRISTL   69 (193)
T ss_dssp             TCCEEECCSSCCCSCCGGGG-GCTTCCEEECCSSCCCCC
T ss_pred             CCCEEECCCCcCchhHHHhh-cccCCCEEECCCCcCCEe
Confidence            455555555444444 2333 445555555555555444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=88.91  E-value=0.018  Score=39.94  Aligned_cols=40  Identities=13%  Similarity=0.129  Sum_probs=34.6

Q ss_pred             cchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCcccccC
Q psy5414          21 GTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLGK   61 (62)
Q Consensus        21 ~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~kien   61 (62)
                      .++++++|+.-.|..|.  .++ .|++|++|+|++|.|+.|+.
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~-~l~~L~~L~Ls~N~i~~i~~   93 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIED   93 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECT
T ss_pred             cCCCEEEeeCCCCCCCCHHHHh-CCCCCCEEECCCCcCCCcCh
Confidence            47899999999999884  466 79999999999999998863

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=88.57  E-value=0.026  Score=37.67  Aligned_cols=40  Identities=28%  Similarity=0.437  Sum_probs=33.7

Q ss_pred             ccchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcccccC
Q psy5414          20 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKLGK   61 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~kien   61 (62)
                      +.+|++|.|.. .|..|+.  .. .|++|+.|.|.+|.|..|..
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~-~~~~L~~l~l~~n~i~~i~~  141 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFK-GCDNLKICQIRKKTAPNLLP  141 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTT-TCTTCCEEEBCCSSCCEECT
T ss_pred             cCCCcEEECCc-cccchhHHHhh-cCcccceEEcCCCCccccch
Confidence            68899999999 9999964  55 89999999999999877753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=88.31  E-value=0.018  Score=36.93  Aligned_cols=39  Identities=23%  Similarity=0.341  Sum_probs=19.2

Q ss_pred             ccchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcccc
Q psy5414          20 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      +.+|++++|+.-.|..|..  ++ .+++|+.|+|++|.|+.+
T Consensus        63 l~~L~~L~L~~N~l~~i~~~~~~-~l~~L~~L~Ls~N~l~~l  103 (229)
T 3e6j_A           63 LINLKELYLGSNQLGALPVGVFD-SLTQLTVLDLGTNQLTVL  103 (229)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCC
T ss_pred             ccCCcEEECCCCCCCCcChhhcc-cCCCcCEEECCCCcCCcc
Confidence            3445555555555544431  22 455555555555555443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=88.31  E-value=0.017  Score=36.91  Aligned_cols=13  Identities=38%  Similarity=0.480  Sum_probs=5.0

Q ss_pred             chhhhhhhhcCCc
Q psy5414          44 KHLRILLLHSNII   56 (62)
Q Consensus        44 rnLkiLyLQnN~I   56 (62)
                      ++|+.|+|++|.|
T Consensus        80 ~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           80 RSLNSLVLYGNKI   92 (220)
T ss_dssp             SSCCEEECCSSCC
T ss_pred             cCCCEEECCCCcC
Confidence            3333333333333

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=87.95  E-value=0.029  Score=37.42  Aligned_cols=33  Identities=24%  Similarity=0.399  Sum_probs=12.4

Q ss_pred             hhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCc
Q psy5414          23 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNII   56 (62)
Q Consensus        23 Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I   56 (62)
                      |++++|+.-.|..+..+. .+++|+.|+|.+|.|
T Consensus       109 L~~L~l~~n~l~~~~~l~-~l~~L~~L~l~~n~l  141 (308)
T 1h6u_A          109 IKTLDLTSTQITDVTPLA-GLSNLQVLYLDLNQI  141 (308)
T ss_dssp             CCEEECTTSCCCCCGGGT-TCTTCCEEECCSSCC
T ss_pred             CCEEECCCCCCCCchhhc-CCCCCCEEECCCCcc
Confidence            333333333333333333 333344444444333

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=87.62  E-value=0.019  Score=35.40  Aligned_cols=38  Identities=21%  Similarity=0.342  Sum_probs=16.9

Q ss_pred             cchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcccc
Q psy5414          21 GTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        21 ~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      .+|++++|+.-.|..|..  ++ .+++|+.|+|.+|.|+.+
T Consensus        54 ~~L~~L~Ls~N~l~~l~~~~f~-~l~~L~~L~L~~N~l~~~   93 (170)
T 3g39_A           54 TQLTRLDLDNNQLTVLPAGVFD-KLTQLTQLSLNDNQLKSI   93 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCC
T ss_pred             ccCCEEECCCCCcCccChhhcc-CCCCCCEEECCCCccCEe
Confidence            344444444444444421  12 344455555555544433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=87.31  E-value=0.025  Score=35.63  Aligned_cols=39  Identities=21%  Similarity=0.249  Sum_probs=19.0

Q ss_pred             ccchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcccc
Q psy5414          20 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      +.+|++++|+.-.|..+..  +. .+++|+.|+|.+|.|+.+
T Consensus        53 l~~L~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~Ls~N~l~~i   93 (193)
T 2wfh_A           53 YKHLTLIDLSNNRISTLSNQSFS-NMTQLLTLILSYNRLRCI   93 (193)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBC
T ss_pred             ccCCCEEECCCCcCCEeCHhHcc-CCCCCCEEECCCCccCEe
Confidence            3445555555555554432  33 345555555555555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=87.12  E-value=0.026  Score=35.23  Aligned_cols=39  Identities=23%  Similarity=0.411  Sum_probs=19.8

Q ss_pred             ccchhhhhcchhhHHhH--HhHHHhcchhhhhhhhcCCcccc
Q psy5414          20 IGTLEEIALHQEHIEKI--EALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~I--e~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      +.+|++++|+.-.|..+  +.++ ..++|+.|+|++|.|+.+
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~   93 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLGENKIKEI   93 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSCCCCEE
T ss_pred             CCCCCEEECCCCCCCCcCHhHcC-CcccCCEEECCCCcCCcc
Confidence            44555555555555554  1233 445555555555555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=87.02  E-value=0.027  Score=37.36  Aligned_cols=38  Identities=18%  Similarity=0.348  Sum_probs=17.2

Q ss_pred             ccchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCccc
Q psy5414          20 IGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISK   58 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~k   58 (62)
                      +.+|++|+|+.-.|..|.  .++ .+++|+.|+|.+|.|+.
T Consensus        55 l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~   94 (347)
T 2ifg_A           55 LGELRNLTIVKSGLRFVAPDAFH-FTPRLSRLNLSFNALES   94 (347)
T ss_dssp             CCCCSEEECCSSCCCEECTTGGG-SCSCCCEEECCSSCCSC
T ss_pred             ccCCCEEECCCCccceeCHHHhc-CCcCCCEEeCCCCccce
Confidence            344444444444444442  122 34455555555555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=86.94  E-value=0.033  Score=35.66  Aligned_cols=39  Identities=18%  Similarity=0.359  Sum_probs=19.9

Q ss_pred             ccchhhhhcchhhHHhH-HhHHHhcchhhhhhhhcCCcccc
Q psy5414          20 IGTLEEIALHQEHIEKI-EALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~I-e~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      +.+|++++|+.-.|..| ..+. .+++|+.|+|++|.|+.+
T Consensus       111 l~~L~~L~Ls~N~l~~lp~~~~-~l~~L~~L~L~~N~l~~~  150 (229)
T 3e6j_A          111 LVHLKELFMCCNKLTELPRGIE-RLTHLTHLALDQNQLKSI  150 (229)
T ss_dssp             CTTCCEEECCSSCCCSCCTTGG-GCTTCSEEECCSSCCCCC
T ss_pred             chhhCeEeccCCcccccCcccc-cCCCCCEEECCCCcCCcc
Confidence            44555555555555544 2333 455555555555555543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=86.63  E-value=0.044  Score=41.18  Aligned_cols=41  Identities=15%  Similarity=0.478  Sum_probs=28.9

Q ss_pred             ccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414          18 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        18 ~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      ..+..|++++|+.-.|..+..++ .|++|+.|+|.+|.|+.+
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~~l~-~l~~L~~L~Ls~N~l~~~   80 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQGIQ-YLPNVTKLFLNGNKLTDI   80 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCTTGG-GCTTCCEEECTTSCCCCC
T ss_pred             hcCCCCCEEECcCCCCCCChHHc-cCCCCCEEEeeCCCCCCC
Confidence            45667777777777777776666 677777777777776654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=86.59  E-value=0.019  Score=34.41  Aligned_cols=43  Identities=21%  Similarity=0.229  Sum_probs=22.7

Q ss_pred             cccccchhhhhcchhhHH--hHHhHHHhcchhhhhhhhcCCcccc
Q psy5414          17 DKEIGTLEEIALHQEHIE--KIEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        17 ~~~l~~Leel~lhq~~Ie--~Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      .....+|++++|+.-.|.  .|...-..+++|+.|+|.+|.|+.+
T Consensus        20 ~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~   64 (168)
T 2ell_A           20 NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV   64 (168)
T ss_dssp             TSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC
T ss_pred             cCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh
Confidence            334455666666655554  4433212456666666666655543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=86.40  E-value=0.028  Score=34.96  Aligned_cols=39  Identities=18%  Similarity=0.320  Sum_probs=18.2

Q ss_pred             ccchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcccc
Q psy5414          20 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      +.+|+.++|+.-.|..|..  ++ .+++|+.|+|++|.|+.+
T Consensus        56 l~~L~~L~Ls~N~l~~i~~~~~~-~l~~L~~L~L~~N~l~~l   96 (174)
T 2r9u_A           56 LVNLQQLYFNSNKLTAIPTGVFD-KLTQLTQLDLNDNHLKSI   96 (174)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCC
T ss_pred             CcCCCEEECCCCCCCccChhHhC-CcchhhEEECCCCcccee
Confidence            3444555555444444421  12 345555555555555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=86.29  E-value=0.027  Score=35.93  Aligned_cols=37  Identities=24%  Similarity=0.388  Sum_probs=16.1

Q ss_pred             ccchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcc
Q psy5414          20 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIIS   57 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~   57 (62)
                      +.+|++++|+.-.|..|..  ++ .+++|+.|+|.+|.|+
T Consensus        56 l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N~l~   94 (220)
T 2v70_A           56 LPQLRKINFSNNKITDIEEGAFE-GASGVNEILLTSNRLE   94 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCC
T ss_pred             CCCCCEEECCCCcCCEECHHHhC-CCCCCCEEECCCCccC
Confidence            3444444444444444431  33 3444444444444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=86.22  E-value=0.05  Score=40.86  Aligned_cols=36  Identities=28%  Similarity=0.373  Sum_probs=15.9

Q ss_pred             cchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcc
Q psy5414          21 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIIS   57 (62)
Q Consensus        21 ~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~   57 (62)
                      .+|++|+|+.-.|..+..+. .|++|+.|+|.+|.|+
T Consensus       109 ~~L~~L~Ls~N~l~~l~~l~-~l~~L~~L~Ls~N~l~  144 (605)
T 1m9s_A          109 KKLKSLSLEHNGISDINGLV-HLPQLESLYLGNNKIT  144 (605)
T ss_dssp             TTCCEEECTTSCCCCCGGGG-GCTTCSEEECCSSCCC
T ss_pred             CCCCEEEecCCCCCCCcccc-CCCccCEEECCCCccC
Confidence            34444444444444444443 3444444444444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=85.86  E-value=0.028  Score=34.97  Aligned_cols=38  Identities=24%  Similarity=0.396  Sum_probs=18.9

Q ss_pred             cchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCcccc
Q psy5414          21 GTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        21 ~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      .+|++++|+.-.|..+.  .++ .+++|+.|+|.+|.|+.+
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~i   72 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFD-HLVNLQQLYFNSNKLTAI   72 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCC
T ss_pred             CCCcEEEeCCCCccccCHHHhc-CCcCCCEEECCCCCCCcc
Confidence            44555555555555442  233 445555555555555444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=85.30  E-value=0.045  Score=39.00  Aligned_cols=40  Identities=25%  Similarity=0.379  Sum_probs=30.1

Q ss_pred             cccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414          19 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        19 ~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      -+..|++++|+.-.|..+..++ .|++|+.|+|.+|.|+.+
T Consensus        40 ~l~~L~~L~Ls~n~l~~~~~l~-~l~~L~~L~Ls~n~l~~~   79 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDMTGIE-KLTGLTKLICTSNNITTL   79 (457)
T ss_dssp             HHTTCCEEECCSSCCCCCTTGG-GCTTCSEEECCSSCCSCC
T ss_pred             HcCCCCEEEccCCCcccChhhc-ccCCCCEEEccCCcCCeE
Confidence            3677888888887777776666 678888888888877654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=85.27  E-value=0.026  Score=37.45  Aligned_cols=40  Identities=20%  Similarity=0.291  Sum_probs=31.7

Q ss_pred             ccchhhhhcch-hhHHhHH--hHHHhcchhhhhhhhcCCccccc
Q psy5414          20 IGTLEEIALHQ-EHIEKIE--ALDKWCKHLRILLLHSNIISKLG   60 (62)
Q Consensus        20 l~~Leel~lhq-~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~kie   60 (62)
                      +.+|++|+|+. -.|..|.  .++ .+++|+.|+|++|.|+.+.
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~   72 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKSGLRFVA   72 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSC-SCCCCSEEECCSSCCCEEC
T ss_pred             CCCeeEEEccCCCCCCCcChhHhc-cccCCCEEECCCCccceeC
Confidence            45689999984 7777775  355 6889999999999998764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=85.22  E-value=0.032  Score=34.39  Aligned_cols=41  Identities=27%  Similarity=0.263  Sum_probs=33.2

Q ss_pred             cccchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCccccc
Q psy5414          19 EIGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLG   60 (62)
Q Consensus        19 ~l~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~kie   60 (62)
                      ...+|++++|+.-.|..+.  .++ .+++|+.|+|.+|.|+.+.
T Consensus        28 ~~~~l~~L~L~~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~   70 (170)
T 3g39_A           28 IPTTTQVLYLYDNQITKLEPGVFD-RLTQLTRLDLDNNQLTVLP   70 (170)
T ss_dssp             CCTTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCC
T ss_pred             CCCCCcEEEcCCCcCCccChhhhc-CcccCCEEECCCCCcCccC
Confidence            3477889999998888884  355 6889999999999998764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=85.08  E-value=0.032  Score=34.50  Aligned_cols=14  Identities=29%  Similarity=0.299  Sum_probs=5.8

Q ss_pred             cchhhhhhhhcCCc
Q psy5414          43 CKHLRILLLHSNII   56 (62)
Q Consensus        43 CrnLkiLyLQnN~I   56 (62)
                      +++|+.|+|.+|.|
T Consensus        75 l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           75 LTSLTYLNLSTNQL   88 (208)
T ss_dssp             CTTCCEEECCSSCC
T ss_pred             CCCcCEEECCCCcC
Confidence            34444444444433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=85.04  E-value=0.032  Score=34.52  Aligned_cols=36  Identities=25%  Similarity=0.384  Sum_probs=15.2

Q ss_pred             cchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcc
Q psy5414          21 GTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIIS   57 (62)
Q Consensus        21 ~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~   57 (62)
                      .+|++++|+.-.|..+..  ++ .+++|+.|+|.+|.|+
T Consensus       100 ~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A          100 TQLKELALNTNQLQSLPDGVFD-KLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCS
T ss_pred             cCCCEEEcCCCcCcccCHhHhc-cCCcCCEEECCCCccc
Confidence            344444444444433321  22 3444444555444444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=84.81  E-value=0.039  Score=36.82  Aligned_cols=38  Identities=29%  Similarity=0.483  Sum_probs=22.6

Q ss_pred             cchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcccc
Q psy5414          21 GTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        21 ~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      .+|++++|+.-.|..+..  ++ .|++|+.|+|++|.|+.+
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~   91 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQ-RCVNLQALVLTSNGINTI   91 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCCEE
T ss_pred             ccCcEEECCCCcCcccCHHHhc-cCCCCCEEECCCCccCcc
Confidence            356666666666665532  44 566666666666666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=84.80  E-value=0.041  Score=35.12  Aligned_cols=37  Identities=27%  Similarity=0.423  Sum_probs=16.1

Q ss_pred             cchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCccc
Q psy5414          21 GTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISK   58 (62)
Q Consensus        21 ~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~k   58 (62)
                      .+|++++|+.-.|..+..  ++ .+++|+.|+|.+|.|+.
T Consensus        81 ~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~  119 (220)
T 2v70_A           81 SGVNEILLTSNRLENVQHKMFK-GLESLKTLMLRSNRITC  119 (220)
T ss_dssp             TTCCEEECCSSCCCCCCGGGGT-TCSSCCEEECTTSCCCC
T ss_pred             CCCCEEECCCCccCccCHhHhc-CCcCCCEEECCCCcCCe
Confidence            344444444444444321  22 34444444444444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=84.56  E-value=0.039  Score=35.33  Aligned_cols=15  Identities=27%  Similarity=0.295  Sum_probs=6.2

Q ss_pred             cchhhhhhhhcCCcc
Q psy5414          43 CKHLRILLLHSNIIS   57 (62)
Q Consensus        43 CrnLkiLyLQnN~I~   57 (62)
                      +++|+.|+|++|.|+
T Consensus       106 l~~L~~L~L~~N~l~  120 (251)
T 3m19_A          106 LTQLDKLYLGGNQLK  120 (251)
T ss_dssp             CTTCCEEECCSSCCC
T ss_pred             cCCCCEEEcCCCcCC
Confidence            344444444444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=84.51  E-value=0.047  Score=38.02  Aligned_cols=39  Identities=10%  Similarity=0.336  Sum_probs=24.8

Q ss_pred             ccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414          20 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      +..++.++++...|..+..+. .|++|+.|+|.+|.|+.+
T Consensus        45 l~~l~~L~l~~~~i~~l~~~~-~l~~L~~L~Ls~n~l~~~   83 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSIDGVE-YLNNLTQINFSNNQLTDI   83 (466)
T ss_dssp             HHTCCEEECCSSCCCCCTTGG-GCTTCCEEECCSSCCCCC
T ss_pred             hccccEEecCCCCCccCcchh-hhcCCCEEECCCCccCCc
Confidence            456666666666666666555 566677676666666543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=84.47  E-value=0.06  Score=37.45  Aligned_cols=41  Identities=20%  Similarity=0.357  Sum_probs=27.4

Q ss_pred             ccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414          18 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        18 ~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      +.+.+|++++|+.-.|..+..++ .|++|+.|+|.+|.|+.+
T Consensus        65 ~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~l~~n~l~~~  105 (466)
T 1o6v_A           65 EYLNNLTQINFSNNQLTDITPLK-NLTKLVDILMNNNQIADI  105 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGT-TCTTCCEEECCSSCCCCC
T ss_pred             hhhcCCCEEECCCCccCCchhhh-ccccCCEEECCCCccccC
Confidence            34667777777777766665555 667777777777766543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=84.44  E-value=0.036  Score=35.37  Aligned_cols=38  Identities=26%  Similarity=0.386  Sum_probs=18.2

Q ss_pred             cchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcccc
Q psy5414          21 GTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        21 ~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      .+|++++|+.-.|..|..  +. .+++|+.|+|.+|.|+.+
T Consensus        80 ~~L~~L~Ls~N~l~~l~~~~f~-~l~~L~~L~L~~N~l~~~  119 (220)
T 2v9t_B           80 RSLNSLVLYGNKITELPKSLFE-GLFSLQLLLLNANKINCL  119 (220)
T ss_dssp             SSCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCC
T ss_pred             cCCCEEECCCCcCCccCHhHcc-CCCCCCEEECCCCCCCEe
Confidence            445555555555544432  22 345555555555555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=84.26  E-value=0.036  Score=33.58  Aligned_cols=15  Identities=40%  Similarity=0.576  Sum_probs=6.5

Q ss_pred             cchhhhhhhhcCCcc
Q psy5414          43 CKHLRILLLHSNIIS   57 (62)
Q Consensus        43 CrnLkiLyLQnN~I~   57 (62)
                      +++|+.|+|++|.|+
T Consensus        75 l~~L~~L~l~~N~l~   89 (177)
T 2o6r_A           75 LTKLTILYLHENKLQ   89 (177)
T ss_dssp             CTTCCEEECCSSCCC
T ss_pred             CCccCEEECCCCCcc
Confidence            344444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=84.00  E-value=0.14  Score=33.64  Aligned_cols=41  Identities=17%  Similarity=0.163  Sum_probs=26.5

Q ss_pred             cccchhhhhcchhhHHhHHh----HHHhcchhhhhhhhcCCcccc
Q psy5414          19 EIGTLEEIALHQEHIEKIEA----LDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        19 ~l~~Leel~lhq~~Ie~Ie~----l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      .+.+|+++.|+.=.|..+..    +-..+++|+.|+|++|.|+.+
T Consensus       195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~  239 (310)
T 4glp_A          195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT  239 (310)
T ss_dssp             SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred             cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence            45667777777766665554    222567777777777777654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=84.00  E-value=0.038  Score=38.17  Aligned_cols=37  Identities=24%  Similarity=0.187  Sum_probs=16.4

Q ss_pred             cchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccc
Q psy5414          21 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK   58 (62)
Q Consensus        21 ~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~k   58 (62)
                      .+|++++|+.-.|..+..+. .+++|+.|+|.+|.|+.
T Consensus       185 ~~L~~L~L~~n~l~~~~~~~-~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          185 SNLRYLNLAMCNLREIPNLT-PLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             SSCCEEECTTSCCSSCCCCT-TCSSCCEEECTTSCCCE
T ss_pred             cccCeecCCCCcCccccccC-CCcccCEEECCCCccCc
Confidence            34444444444444444333 34444444444444433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=83.56  E-value=0.041  Score=37.37  Aligned_cols=38  Identities=29%  Similarity=0.355  Sum_probs=17.7

Q ss_pred             ccchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCccc
Q psy5414          20 IGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISK   58 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~k   58 (62)
                      +.+|+.++|+.-.|..|.  .+. .+++|+.|+|.+|.|+.
T Consensus        63 l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N~l~~  102 (361)
T 2xot_A           63 LTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLSSNHLHT  102 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCE
T ss_pred             ccccCEEECCCCcCCccChhhcc-CCCCCCEEECCCCcCCc
Confidence            344555555544444443  133 44455555555554443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=83.55  E-value=0.071  Score=39.55  Aligned_cols=36  Identities=17%  Similarity=0.260  Sum_probs=14.5

Q ss_pred             cchhhhhcchhhHHhH-HhHHHhcchhhhhhhhcCCcc
Q psy5414          21 GTLEEIALHQEHIEKI-EALDKWCKHLRILLLHSNIIS   57 (62)
Q Consensus        21 ~~Leel~lhq~~Ie~I-e~l~~~CrnLkiLyLQnN~I~   57 (62)
                      .+|+.++|+.-.|..| ..++ .+++|+.|+|++|.|+
T Consensus       463 ~~L~~L~Ls~N~l~~lp~~~~-~l~~L~~L~Ls~N~l~  499 (567)
T 1dce_A          463 LLVTHLDLSHNRLRALPPALA-ALRCLEVLQASDNALE  499 (567)
T ss_dssp             TTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCC
T ss_pred             ccCcEeecCcccccccchhhh-cCCCCCEEECCCCCCC
Confidence            3444444444444433 2233 3344444444444433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=82.97  E-value=0.046  Score=37.11  Aligned_cols=39  Identities=23%  Similarity=0.388  Sum_probs=21.8

Q ss_pred             ccchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcccc
Q psy5414          20 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      +.+|++++|+.-.|..+..  ++ .+++|+.|+|.+|.|+.+
T Consensus        87 l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~  127 (361)
T 2xot_A           87 VPNLRYLDLSSNHLHTLDEFLFS-DLQALEVLLLYNNHIVVV  127 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEE
T ss_pred             CCCCCEEECCCCcCCcCCHHHhC-CCcCCCEEECCCCcccEE
Confidence            4456666666655555532  33 456666666666666544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=82.63  E-value=0.047  Score=34.92  Aligned_cols=15  Identities=27%  Similarity=0.374  Sum_probs=6.6

Q ss_pred             cchhhhhhhhcCCcc
Q psy5414          43 CKHLRILLLHSNIIS   57 (62)
Q Consensus        43 CrnLkiLyLQnN~I~   57 (62)
                      +++|+.|+|++|.|+
T Consensus       154 l~~L~~L~L~~N~l~  168 (251)
T 3m19_A          154 LTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             CTTCCEEECCSSCCS
T ss_pred             CcCCCEEECCCCcCC
Confidence            344444444444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=82.50  E-value=0.048  Score=35.02  Aligned_cols=37  Identities=30%  Similarity=0.381  Sum_probs=16.7

Q ss_pred             cchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCccc
Q psy5414          21 GTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISK   58 (62)
Q Consensus        21 ~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~k   58 (62)
                      .+|++++|+.-.|..+..  ++ .+++|+.|+|.+|.|+.
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~   90 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQS   90 (276)
T ss_dssp             TTCSEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCE
T ss_pred             cCCcEEECCCCcCCccCHHHcc-CCcCCCEEECCCCccCc
Confidence            344444554444444421  33 34455555555554443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=82.43  E-value=0.082  Score=36.75  Aligned_cols=38  Identities=24%  Similarity=0.297  Sum_probs=18.5

Q ss_pred             cchhhhhcchhhHHhH--HhHHHhcchhhhhhhhcCCcccc
Q psy5414          21 GTLEEIALHQEHIEKI--EALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        21 ~~Leel~lhq~~Ie~I--e~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      .+|++++|+.-.|..+  +.++ .+++|+.|+|++|.|+.+
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~   60 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDIL-SLSKLRILIISHNRIQYL   60 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHT-TCTTCCEEECCSSCCCEE
T ss_pred             ccccEEECCCCcccccChhhcc-ccccccEEecCCCccCCc
Confidence            3455555555555444  2333 445555555555555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=82.39  E-value=0.05  Score=37.71  Aligned_cols=16  Identities=19%  Similarity=0.208  Sum_probs=7.1

Q ss_pred             cchhhhhhhhcCCccc
Q psy5414          43 CKHLRILLLHSNIISK   58 (62)
Q Consensus        43 CrnLkiLyLQnN~I~k   58 (62)
                      +++|+.|+|.+|.|+.
T Consensus       241 l~~L~~L~L~~n~l~~  256 (452)
T 3zyi_A          241 LSSLKKLWVMNSQVSL  256 (452)
T ss_dssp             CTTCCEEECTTSCCCE
T ss_pred             ccCCCEEEeCCCcCce
Confidence            3444444444444433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=82.35  E-value=0.056  Score=35.96  Aligned_cols=15  Identities=27%  Similarity=0.304  Sum_probs=6.3

Q ss_pred             cchhhhhhhhcCCcc
Q psy5414          43 CKHLRILLLHSNIIS   57 (62)
Q Consensus        43 CrnLkiLyLQnN~I~   57 (62)
                      +++|+.|+|.+|.|+
T Consensus       123 l~~L~~L~L~~N~l~  137 (290)
T 1p9a_G          123 LGELQELYLKGNELK  137 (290)
T ss_dssp             CTTCCEEECTTSCCC
T ss_pred             CCCCCEEECCCCCCC
Confidence            344444444444433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=82.32  E-value=0.052  Score=35.10  Aligned_cols=15  Identities=27%  Similarity=0.261  Sum_probs=6.2

Q ss_pred             cchhhhhhhhcCCcc
Q psy5414          43 CKHLRILLLHSNIIS   57 (62)
Q Consensus        43 CrnLkiLyLQnN~I~   57 (62)
                      +++|+.|+|.+|.|+
T Consensus       156 l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A          156 LTSLKELRLYNNQLK  170 (270)
T ss_dssp             CTTCCEEECCSSCCS
T ss_pred             CcccceeEecCCcCc
Confidence            344444444444333

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=81.91  E-value=0.062  Score=35.52  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=18.1

Q ss_pred             ccchhhhhcchhhHHhH--HhHHHhcchhhhhhhhcCCccc
Q psy5414          20 IGTLEEIALHQEHIEKI--EALDKWCKHLRILLLHSNIISK   58 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~I--e~l~~~CrnLkiLyLQnN~I~k   58 (62)
                      +.+|++++|+.-.|..+  +.++ .|++|+.|+|.+|.|+.
T Consensus        77 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~  116 (332)
T 2ft3_A           77 LQHLYALVLVNNKISKIHEKAFS-PLRKLQKLYISKNHLVE  116 (332)
T ss_dssp             CTTCCEEECCSSCCCEECGGGST-TCTTCCEEECCSSCCCS
T ss_pred             CCCCcEEECCCCccCccCHhHhh-CcCCCCEEECCCCcCCc
Confidence            34455555554444444  2233 44555555555555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=81.30  E-value=0.031  Score=35.34  Aligned_cols=17  Identities=0%  Similarity=-0.017  Sum_probs=7.5

Q ss_pred             hcchhhhhhhhc-CCccc
Q psy5414          42 WCKHLRILLLHS-NIISK   58 (62)
Q Consensus        42 ~CrnLkiLyLQn-N~I~k   58 (62)
                      .|++|+.|+|++ |.|+.
T Consensus        78 ~l~~L~~L~l~~~n~l~~   95 (239)
T 2xwt_C           78 NLSKVTHIEIRNTRNLTY   95 (239)
T ss_dssp             SCTTCCEEEEEEETTCCE
T ss_pred             CCcCCcEEECCCCCCeeE
Confidence            344444444444 44443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=81.07  E-value=0.056  Score=32.72  Aligned_cols=39  Identities=21%  Similarity=0.393  Sum_probs=19.8

Q ss_pred             ccchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcccc
Q psy5414          20 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      +.+|++++|+.-.|..+..  ++ .+++|+.|+|.+|.|+.+
T Consensus        75 l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~  115 (177)
T 2o6r_A           75 LTKLTILYLHENKLQSLPNGVFD-KLTQLKELALDTNQLKSV  115 (177)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCC
T ss_pred             CCccCEEECCCCCccccCHHHhh-CCcccCEEECcCCcceEe
Confidence            4455555555555544432  22 345555566655555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=80.84  E-value=0.075  Score=35.40  Aligned_cols=40  Identities=33%  Similarity=0.541  Sum_probs=29.2

Q ss_pred             ccchh-hhhcchhhHHhHH--hHHHhcchhhhhhhhcCCcccccC
Q psy5414          20 IGTLE-EIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLGK   61 (62)
Q Consensus        20 l~~Le-el~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~kien   61 (62)
                      +.+|+ ++.|.. .+..|+  ... .|++|+.|+|.+|.|+.|+.
T Consensus       272 ~~~L~~~l~l~~-~l~~I~~~aF~-~c~~L~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          272 CGRLAGTLELPA-SVTAIEFGAFM-GCDNLRYVLATGDKITTLGD  314 (329)
T ss_dssp             CTTCCEEEEECT-TCCEECTTTTT-TCTTEEEEEECSSCCCEECT
T ss_pred             ChhccEEEEEcc-cceEEchhhhh-CCccCCEEEeCCCccCccch
Confidence            34577 777777 777775  244 78888888888888887764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=80.64  E-value=0.13  Score=38.22  Aligned_cols=38  Identities=21%  Similarity=0.347  Sum_probs=17.9

Q ss_pred             ccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccc
Q psy5414          20 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK   58 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~k   58 (62)
                      +.+|+.++|+.-.|..|..++ .+++|+.|+|.+|.|+.
T Consensus       485 l~~L~~L~Ls~N~l~~lp~l~-~l~~L~~L~Ls~N~l~~  522 (567)
T 1dce_A          485 LRCLEVLQASDNALENVDGVA-NLPRLQELLLCNNRLQQ  522 (567)
T ss_dssp             CTTCCEEECCSSCCCCCGGGT-TCSSCCEEECCSSCCCS
T ss_pred             CCCCCEEECCCCCCCCCcccC-CCCCCcEEECCCCCCCC
Confidence            344444455444444444343 34455555555554443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=80.61  E-value=0.052  Score=35.94  Aligned_cols=37  Identities=16%  Similarity=0.221  Sum_probs=18.6

Q ss_pred             ccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccc
Q psy5414          20 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK   58 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~k   58 (62)
                      +.+|++++|+.-.|..|..  ...++|+.|+|.+|.|+.
T Consensus       252 l~~L~~L~Ls~N~l~~ip~--~~~~~L~~L~Ls~N~l~~  288 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLKQVPK--GLPAKLSVLDLSYNRLDR  288 (312)
T ss_dssp             CTTCCEEECTTSCCSSCCS--SCCSEEEEEECCSSCCCS
T ss_pred             cCCCCEEECCCCccChhhh--hccCCceEEECCCCCCCC
Confidence            3556666665555554421  011555555555555544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=80.53  E-value=0.074  Score=36.67  Aligned_cols=14  Identities=43%  Similarity=0.361  Sum_probs=6.0

Q ss_pred             cchhhhhhhhcCCc
Q psy5414          43 CKHLRILLLHSNII   56 (62)
Q Consensus        43 CrnLkiLyLQnN~I   56 (62)
                      |++|+.|+|.+|.|
T Consensus        79 l~~L~~L~L~~n~l   92 (477)
T 2id5_A           79 LFNLRTLGLRSNRL   92 (477)
T ss_dssp             CTTCCEEECCSSCC
T ss_pred             CccCCEEECCCCcC
Confidence            34444444444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=80.43  E-value=0.072  Score=34.21  Aligned_cols=15  Identities=40%  Similarity=0.310  Sum_probs=7.0

Q ss_pred             cchhhhhhhhcCCcc
Q psy5414          43 CKHLRILLLHSNIIS   57 (62)
Q Consensus        43 CrnLkiLyLQnN~I~   57 (62)
                      +++|+.|+|.+|.|+
T Consensus       148 l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          148 LTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             CTTCCEEECCSSCCC
T ss_pred             CCCCCEEECCCCCCC
Confidence            444444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=80.37  E-value=0.062  Score=35.39  Aligned_cols=37  Identities=24%  Similarity=0.345  Sum_probs=21.6

Q ss_pred             cchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414          21 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        21 ~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      .+|++++|+.-.|..|..  .++++|+.|+|.+|.|+.+
T Consensus       251 ~~L~~L~Ls~N~l~~lp~--~~~~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          251 SALNSLNLSFAGLEQVPK--GLPAKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             TTCCCEECCSSCCCSCCS--CCCSCCSCEECCSCCCCSC
T ss_pred             CcCCEEECCCCCCCchhh--hhcCCCCEEECCCCcCCCC
Confidence            466666666666655422  1346666666666666543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=80.14  E-value=0.12  Score=39.31  Aligned_cols=38  Identities=18%  Similarity=0.299  Sum_probs=18.3

Q ss_pred             ccchhhhhcchhhHHhHH-hHHHhcchhhhhhhhcCCccc
Q psy5414          20 IGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISK   58 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~Ie-~l~~~CrnLkiLyLQnN~I~k   58 (62)
                      +..|++|+|+.-.|..|- .++ .+++|+.|+|.+|.|+.
T Consensus       246 l~~L~~L~Ls~N~l~~lp~~~~-~l~~L~~L~Ls~N~l~~  284 (727)
T 4b8c_D          246 YDFLTRLYLNGNSLTELPAEIK-NLSNLRVLDLSHNRLTS  284 (727)
T ss_dssp             CCSCSCCBCTTSCCSCCCGGGG-GGTTCCEEECTTSCCSS
T ss_pred             CCCCCEEEeeCCcCcccChhhh-CCCCCCEEeCcCCcCCc
Confidence            444555555554444442 233 44555555555555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=80.14  E-value=0.08  Score=34.84  Aligned_cols=37  Identities=27%  Similarity=0.296  Sum_probs=17.2

Q ss_pred             cchhhhhcchhhHHhH--HhHHHhcchhhhhhhhcCCccc
Q psy5414          21 GTLEEIALHQEHIEKI--EALDKWCKHLRILLLHSNIISK   58 (62)
Q Consensus        21 ~~Leel~lhq~~Ie~I--e~l~~~CrnLkiLyLQnN~I~k   58 (62)
                      .+|++++|+.-.|..+  +.++ .|++|+.|+|.+|.|+.
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~  114 (330)
T 1xku_A           76 KNLHTLILINNKISKISPGAFA-PLVKLERLYLSKNQLKE  114 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCSB
T ss_pred             CCCCEEECCCCcCCeeCHHHhc-CCCCCCEEECCCCcCCc
Confidence            4445555554444444  1233 44555555555554443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=80.04  E-value=0.076  Score=36.05  Aligned_cols=15  Identities=33%  Similarity=0.321  Sum_probs=6.4

Q ss_pred             cchhhhhhhhcCCcc
Q psy5414          43 CKHLRILLLHSNIIS   57 (62)
Q Consensus        43 CrnLkiLyLQnN~I~   57 (62)
                      |++|+.|+|++|.|+
T Consensus       346 l~~L~~L~Ls~N~l~  360 (455)
T 3v47_A          346 LDKLEVLDLSYNHIR  360 (455)
T ss_dssp             CTTCCEEECCSSCCC
T ss_pred             cccCCEEECCCCccc
Confidence            344444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	62
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.79
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	96.09
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	96.08
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	95.45
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	95.28
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	95.25
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	95.19
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	95.0
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.94
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	94.77
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	94.57
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	94.31
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	94.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	93.15
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	92.63
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	91.96
d2ifga3	156	High affinity nerve growth factor receptor, N-term	91.09
d2ifga3	156	High affinity nerve growth factor receptor, N-term	87.62
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	84.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	82.49
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	82.45
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	80.61

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.1e-08  Score=62.18  Aligned_cols=58  Identities=22%  Similarity=0.280  Sum_probs=49.9

Q ss_pred             chhhHHHHHhhcccccccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccccC
Q psy5414           2 VRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGK   61 (62)
Q Consensus         2 vriT~eLirkraEhn~~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kien   61 (62)
                      ||+|.++|.+.....+  ..++.+++|+.-.|..|+.+...+++|++|+|.+|.|+.+++
T Consensus         1 ~rLt~~~i~~~~~~~n--~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~   58 (162)
T d1a9na_           1 VKLTAELIEQAAQYTN--AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG   58 (162)
T ss_dssp             CCCCHHHHHTSCEEEC--TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC
T ss_pred             CCCCHHHHhhhHhccC--cCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCC
Confidence            7999999998876543  337899999999999999887789999999999999998864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.79  E-value=1.6e-05  Score=50.13  Aligned_cols=41  Identities=37%  Similarity=0.532  Sum_probs=34.5

Q ss_pred             ccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccccC
Q psy5414          20 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGK   61 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kien   61 (62)
                      +.+|++++|+.-.|..|+.++ .|++|+.|+|.+|.|+.|++
T Consensus        47 L~~L~~L~Ls~n~I~~i~~l~-~l~~L~~L~Ls~N~i~~i~~   87 (198)
T d1m9la_          47 LKACKHLALSTNNIEKISSLS-GMENLRILSLGRNLIKKIEN   87 (198)
T ss_dssp             TTTCCEEECSEEEESCCCCHH-HHTTCCEEECCEEEECSCSS
T ss_pred             ccccceeECcccCCCCccccc-CCccccChhhcccccccccc
Confidence            567888899988888888888 78999999999998887753

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.09  E-value=0.00011  Score=46.65  Aligned_cols=41  Identities=10%  Similarity=0.332  Sum_probs=34.7

Q ss_pred             cccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccccc
Q psy5414          19 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG   60 (62)
Q Consensus        19 ~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kie   60 (62)
                      .+.+|+++.++..+|..|+.++ .+++|+.|+|.+|.|+.+.
T Consensus        42 ~l~~l~~L~l~~~~I~~l~gl~-~L~nL~~L~Ls~N~l~~l~   82 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSIDGVE-YLNNLTQINFSNNQLTDIT   82 (384)
T ss_dssp             HHTTCCEEECCSSCCCCCTTGG-GCTTCCEEECCSSCCCCCG
T ss_pred             HhCCCCEEECCCCCCCCccccc-cCCCCCEEeCcCCcCCCCc
Confidence            5678899999999998888887 7899999999999887653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.08  E-value=0.00012  Score=44.89  Aligned_cols=42  Identities=10%  Similarity=0.325  Sum_probs=36.5

Q ss_pred             ccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccccc
Q psy5414          18 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG   60 (62)
Q Consensus        18 ~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kie   60 (62)
                      ..+.++++++++.-+|..++.++ .|++|+.|+|.+|.|+.+.
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~~l~-~l~nL~~L~Ls~N~l~~~~   78 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSIDGVE-YLNNLTQINFSNNQLTDIT   78 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGG-GCTTCCEEECCSSCCCCCG
T ss_pred             HHhcCCCEEECCCCCCCCccccc-cCCCcCcCccccccccCcc
Confidence            45788999999999999998888 8999999999999987653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.45  E-value=0.00028  Score=43.61  Aligned_cols=41  Identities=15%  Similarity=0.463  Sum_probs=32.5

Q ss_pred             cccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccccc
Q psy5414          19 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG   60 (62)
Q Consensus        19 ~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kie   60 (62)
                      .+.+|+++.++...|..+..|+ .|++|+.|+|.+|.|+.+.
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~-~l~~L~~L~L~~n~i~~l~   84 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQ-YLPNVTKLFLNGNKLTDIK   84 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGG-GCTTCCEEECCSSCCCCCG
T ss_pred             HhcCccEEECcCCCCCCchhHh-hCCCCCEEeCCCccccCcc
Confidence            4677888888888888877776 7888888888888877654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.28  E-value=0.00045  Score=42.46  Aligned_cols=42  Identities=21%  Similarity=0.283  Sum_probs=34.5

Q ss_pred             ccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccccc
Q psy5414          18 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG   60 (62)
Q Consensus        18 ~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kie   60 (62)
                      +.+.+|++++|+.-.+..|..++ .|++|+.|+|.+|.|+.|.
T Consensus       170 ~~l~~L~~L~Ls~n~l~~l~~l~-~l~~L~~L~Ls~N~lt~i~  211 (227)
T d1h6ua2         170 ANLSKLTTLKADDNKISDISPLA-SLPNLIEVHLKNNQISDVS  211 (227)
T ss_dssp             TTCTTCCEEECCSSCCCCCGGGG-GCTTCCEEECTTSCCCBCG
T ss_pred             cccccceecccCCCccCCChhhc-CCCCCCEEECcCCcCCCCc
Confidence            45678899999887788887777 7899999999999988763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.25  E-value=0.0005  Score=40.32  Aligned_cols=39  Identities=15%  Similarity=0.286  Sum_probs=18.2

Q ss_pred             ccchhhhhcchhhHHhH-HhHHHhcchhhhhhhhcCCcccc
Q psy5414          20 IGTLEEIALHQEHIEKI-EALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~I-e~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      +..|++++++.-.|..| +.++ .+++|+.|+|.+|.|+.+
T Consensus        19 l~~L~~L~ls~N~l~~lp~~~~-~l~~L~~L~l~~N~i~~l   58 (124)
T d1dcea3          19 LLLVTHLDLSHNRLRALPPALA-ALRCLEVLQASDNALENV   58 (124)
T ss_dssp             GTTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCC
T ss_pred             CCCCCEEECCCCccCcchhhhh-hhhccccccccccccccc
Confidence            34445555554444444 2333 345555555555544443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.00023  Score=43.37  Aligned_cols=40  Identities=20%  Similarity=0.502  Sum_probs=26.7

Q ss_pred             cccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414          19 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        19 ~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      .+..|+.++|+.-.|..|+.++ .|++|+.|+|.+|.|+.+
T Consensus        39 ~l~~L~~L~Ls~N~i~~l~~~~-~l~~L~~L~ls~N~i~~l   78 (162)
T d1a9na_          39 TLDQFDAIDFSDNEIRKLDGFP-LLRRLKTLLVNNNRICRI   78 (162)
T ss_dssp             GTTCCSEEECCSSCCCEECCCC-CCSSCCEEECCSSCCCEE
T ss_pred             ccccCCEEECCCCCCCccCCcc-cCcchhhhhcccccccCC
Confidence            3556677777777677666665 566777777777766654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.00  E-value=0.00055  Score=40.10  Aligned_cols=39  Identities=21%  Similarity=0.320  Sum_probs=20.6

Q ss_pred             ccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414          20 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      +.+|+.++++.-.|..++.+. -|++|+.|++.+|.|+.+
T Consensus        42 l~~L~~L~l~~N~i~~l~~~~-~l~~L~~L~l~~N~i~~~   80 (124)
T d1dcea3          42 LRCLEVLQASDNALENVDGVA-NLPRLQELLLCNNRLQQS   80 (124)
T ss_dssp             CTTCCEEECCSSCCCCCGGGT-TCSSCCEEECCSSCCCSS
T ss_pred             hhcccccccccccccccCccc-cccccCeEECCCCccCCC
Confidence            445555555555555555444 455555555555555443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.00087  Score=40.48  Aligned_cols=41  Identities=20%  Similarity=0.289  Sum_probs=25.5

Q ss_pred             ccchhhhhcchhhHHhHHhH---HHhcchhhhhhhhcCCccccc
Q psy5414          20 IGTLEEIALHQEHIEKIEAL---DKWCKHLRILLLHSNIISKLG   60 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~Ie~l---~~~CrnLkiLyLQnN~I~kie   60 (62)
                      +.+|++++|+.=.|..+..+   ...|++|+.|+|++|.|+.++
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~  107 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER  107 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGG
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccch
Confidence            45667777777666655432   225677777777777776654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=94.77  E-value=0.00056  Score=42.01  Aligned_cols=41  Identities=20%  Similarity=0.331  Sum_probs=35.8

Q ss_pred             ccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414          18 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        18 ~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      .-+++|+++++..-+|..++.++ .|++|+.|+|.+|.|..+
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~l~-~l~~L~~L~ls~n~i~~~   78 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIEGVQ-YLNNLIGLELKDNQITDL   78 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGG-GCTTCCEEECCSSCCCCC
T ss_pred             HHcCCcCEEECCCCCCCcchhHh-cCCCCcEeecCCceeecc
Confidence            45788999999999999998888 899999999999988765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.57  E-value=0.0007  Score=42.75  Aligned_cols=42  Identities=29%  Similarity=0.456  Sum_probs=34.1

Q ss_pred             cccchhhhhcchhhHHhH-HhHHHhcchhhhhhhhcCCcccccC
Q psy5414          19 EIGTLEEIALHQEHIEKI-EALDKWCKHLRILLLHSNIISKLGK   61 (62)
Q Consensus        19 ~l~~Leel~lhq~~Ie~I-e~l~~~CrnLkiLyLQnN~I~kien   61 (62)
                      .+.+|+++.|+.-.|..| +.+. .+++|+.|+|++|.|+.|+.
T Consensus       217 ~l~~L~~L~L~~N~L~~lp~~l~-~l~~L~~L~Ls~N~i~~i~~  259 (305)
T d1xkua_         217 NTPHLRELHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNISAIGS  259 (305)
T ss_dssp             GSTTCCEEECCSSCCSSCCTTTT-TCSSCCEEECCSSCCCCCCT
T ss_pred             ccccceeeecccccccccccccc-cccCCCEEECCCCccCccCh
Confidence            356888999988888877 4566 68999999999999998853

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=94.31  E-value=0.0011  Score=41.95  Aligned_cols=41  Identities=20%  Similarity=0.357  Sum_probs=36.3

Q ss_pred             ccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414          18 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        18 ~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      +++.+|++++|+.=.|..+..++ -|++|+.|+|.+|.|+.+
T Consensus        63 ~~L~nL~~L~Ls~N~l~~l~~l~-~L~~L~~L~L~~n~i~~i  103 (384)
T d2omza2          63 EYLNNLTQINFSNNQLTDITPLK-NLTKLVDILMNNNQIADI  103 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGT-TCTTCCEEECCSSCCCCC
T ss_pred             ccCCCCCEEeCcCCcCCCCcccc-CCcccccccccccccccc
Confidence            46889999999998888888787 799999999999999865

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=94.28  E-value=0.0011  Score=40.75  Aligned_cols=42  Identities=21%  Similarity=0.342  Sum_probs=35.0

Q ss_pred             ccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccccc
Q psy5414          18 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG   60 (62)
Q Consensus        18 ~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kie   60 (62)
                      +.+.+|++++|+.-.|..+..++ .|++|+.|+|.+|.|+.+.
T Consensus        65 ~~l~~L~~L~L~~n~i~~l~~~~-~l~~L~~L~l~~n~i~~l~  106 (210)
T d1h6ta2          65 QYLPNVTKLFLNGNKLTDIKPLA-NLKNLGWLFLDENKVKDLS  106 (210)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGT-TCTTCCEEECCSSCCCCGG
T ss_pred             hhCCCCCEEeCCCccccCccccc-cCccccccccccccccccc
Confidence            45778999999988888888776 7889999999999887664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=93.15  E-value=0.00099  Score=41.52  Aligned_cols=37  Identities=27%  Similarity=0.460  Sum_probs=20.8

Q ss_pred             cchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccc
Q psy5414          21 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK   58 (62)
Q Consensus        21 ~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~k   58 (62)
                      .+|++++++.-.|..|..+. .|++|+.|+|++|.|+.
T Consensus        93 ~~L~~L~l~~N~i~~l~~~~-~l~~L~~L~L~~N~i~~  129 (198)
T d1m9la_          93 DTLEELWISYNQIASLSGIE-KLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             HHCCEEECSEEECCCHHHHH-HHHHSSEEEESEEECCC
T ss_pred             cccccccccccccccccccc-ccccccccccccchhcc
Confidence            34555555555555555554 45566666666665544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=92.63  E-value=0.003  Score=38.36  Aligned_cols=42  Identities=19%  Similarity=0.340  Sum_probs=34.2

Q ss_pred             ccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccccc
Q psy5414          18 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG   60 (62)
Q Consensus        18 ~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kie   60 (62)
                      +.+++|+.++|+.-.|..+..++ .|++|+.|++.+|.+..+.
T Consensus        59 ~~l~nL~~L~Ls~N~l~~~~~l~-~l~~L~~L~l~~n~~~~~~  100 (199)
T d2omxa2          59 EYLNNLTQINFSNNQLTDITPLK-NLTKLVDILMNNNQIADIT  100 (199)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGT-TCTTCCEEECCSSCCCCCG
T ss_pred             ccCCCcCcCccccccccCccccc-CCccccccccccccccccc
Confidence            45788889999888888777777 7889999999999887654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.96  E-value=0.029  Score=33.43  Aligned_cols=37  Identities=14%  Similarity=0.133  Sum_probs=28.9

Q ss_pred             hhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccccc
Q psy5414          24 EEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG   60 (62)
Q Consensus        24 eel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kie   60 (62)
                      ..+++....+..+..+...|++|+.|+|++|.|+.+.
T Consensus        45 ~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~   81 (162)
T d1koha1          45 VVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLD   81 (162)
T ss_dssp             CCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCS
T ss_pred             hhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCc
Confidence            3344556666777777778999999999999998764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.09  E-value=0.0032  Score=37.85  Aligned_cols=40  Identities=23%  Similarity=0.308  Sum_probs=22.3

Q ss_pred             ccchhhhhcc-hhhHHhHH--hHHHhcchhhhhhhhcCCccccc
Q psy5414          20 IGTLEEIALH-QEHIEKIE--ALDKWCKHLRILLLHSNIISKLG   60 (62)
Q Consensus        20 l~~Leel~lh-q~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~kie   60 (62)
                      +.+|+++++. +..|+.|.  .+. ..++|+.|+|.+|.|+.|+
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~-~l~~L~~L~Ls~N~l~~i~   72 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKSGLRFVA   72 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSC-SCCCCSEEECCSSCCCEEC
T ss_pred             ccccCeeecCCCccccccCchhhc-cccccCcceeeccccCCcc
Confidence            3455666663 33466554  233 4556666666666666654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.62  E-value=0.009  Score=35.80  Aligned_cols=40  Identities=18%  Similarity=0.345  Sum_probs=34.0

Q ss_pred             ccchhhhhcchhhHHhHH-h-HHHhcchhhhhhhhcCCccccc
Q psy5414          20 IGTLEEIALHQEHIEKIE-A-LDKWCKHLRILLLHSNIISKLG   60 (62)
Q Consensus        20 l~~Leel~lhq~~Ie~Ie-~-l~~~CrnLkiLyLQnN~I~kie   60 (62)
                      +..|+.++|+.-.|..|+ . ++ ..++|+.|+|++|.|+.+.
T Consensus        55 l~~L~~L~Ls~N~l~~i~~~~f~-~l~~L~~L~Ls~N~l~~l~   96 (156)
T d2ifga3          55 LGELRNLTIVKSGLRFVAPDAFH-FTPRLSRLNLSFNALESLS   96 (156)
T ss_dssp             CCCCSEEECCSSCCCEECTTGGG-SCSCCCEEECCSSCCSCCC
T ss_pred             ccccCcceeeccccCCccccccc-ccccccceeccCCCCcccC
Confidence            678999999999999985 3 45 7899999999999998764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.71  E-value=0.022  Score=35.52  Aligned_cols=39  Identities=18%  Similarity=0.123  Sum_probs=22.3

Q ss_pred             cchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCccccc
Q psy5414          21 GTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLG   60 (62)
Q Consensus        21 ~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~kie   60 (62)
                      .++++++|+.-.|..|.  .+. -+++|+.|+|.+|.|+.|+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~-~l~~L~~L~L~~N~l~~l~   71 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAELTKLQ   71 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGT-TCTTCCEEECTTSCCCEEE
T ss_pred             cCCCEEECcCCcCCCcCHHHhh-ccccccccccccccccccc
Confidence            34666666666565552  344 4566666666666665543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.49  E-value=0.028  Score=33.68  Aligned_cols=14  Identities=36%  Similarity=0.446  Sum_probs=5.6

Q ss_pred             chhhhhhhhcCCcc
Q psy5414          44 KHLRILLLHSNIIS   57 (62)
Q Consensus        44 rnLkiLyLQnN~I~   57 (62)
                      ++|+.|+|.+|.|+
T Consensus        78 ~~L~~L~Ls~N~l~   91 (192)
T d1w8aa_          78 SHIQELQLGENKIK   91 (192)
T ss_dssp             TTCCEEECCSCCCC
T ss_pred             cccceeeecccccc
Confidence            33444444444333

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.45  E-value=0.016  Score=36.25  Aligned_cols=40  Identities=20%  Similarity=0.218  Sum_probs=30.6

Q ss_pred             cccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414          19 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL   59 (62)
Q Consensus        19 ~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki   59 (62)
                      .+.+|++|+|+.=.|..|+..+ ..++|+.|+|.+|.|+.+
T Consensus        53 ~l~~L~~L~L~~N~l~~l~~~~-~l~~L~~L~Ls~N~l~~~   92 (266)
T d1p9ag_          53 PYTRLTQLNLDRAELTKLQVDG-TLPVLGTLDLSHNQLQSL   92 (266)
T ss_dssp             TCTTCCEEECTTSCCCEEECCS-CCTTCCEEECCSSCCSSC
T ss_pred             cccccccccccccccccccccc-cccccccccccccccccc
Confidence            4677888888887777776655 678888888888887643

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=80.61  E-value=0.029  Score=34.27  Aligned_cols=35  Identities=17%  Similarity=0.269  Sum_probs=15.2

Q ss_pred             cchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccc
Q psy5414          21 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK   58 (62)
Q Consensus        21 ~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~k   58 (62)
                      .+|++++|+.=.|..|.   .+.++|+.|+|.+|.|+.
T Consensus       284 ~~L~~L~Ls~N~l~~lp---~~~~~L~~L~L~~N~L~~  318 (353)
T d1jl5a_         284 PSLEELNVSNNKLIELP---ALPPRLERLIASFNHLAE  318 (353)
T ss_dssp             TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC
T ss_pred             CCCCEEECCCCccCccc---cccCCCCEEECCCCcCCc
Confidence            45555555543333322   123344444444444433