Psyllid ID: psy5457

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MNPETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKVGAVLTML
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccEEcccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccccHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHHHcHHHHccEEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcHHHHHccccccHHHHHHHHcccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHcccHccccEEEEEEccccEccccHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MNPETSVDLLENYIHFRkthpeifgqlslkdpyvqiclrnrfpgvlpdrdrngrCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLdwnqtsiyaspTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKVGAVLTML
Flexible Loop (DISEMBL)
MNPETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNrfpgvlpdrdrNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVkpflkektrdkVGAVLTML
Low Complexity Region (SEG)
MNPETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKsllllmdsllVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKVGAVLTML
Disordered region (IsUnstruct)
*******DLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKT***********
Disordered Region (DISOPRED)
MNPETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKVGAVLTML
Disordered Region (DISEMBL)
MNPETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKVGAVLTML
Disordered Region (DISPRO)
MNPETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKVGAVLTML
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNPETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKVGAVLTML
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
Q5SPP0	329	Clavesin-2 OS=Danio rerio	yes	N/A	0.910	0.462	0.365	3e-29
Q5M7E1	332	Clavesin-1 OS=Xenopus lae	N/A	N/A	0.910	0.457	0.378	8e-29
Q95KF7	327	Clavesin-2 OS=Macaca fasc	N/A	N/A	0.910	0.464	0.358	3e-28
Q5SYC1	327	Clavesin-2 OS=Homo sapien	yes	N/A	0.910	0.464	0.358	3e-28
A6JUQ6	327	Clavesin-2 OS=Rattus norv	yes	N/A	0.910	0.464	0.358	3e-28
Q5RCA6	354	Clavesin-1 OS=Pongo abeli	yes	N/A	0.910	0.429	0.371	3e-28
Q8IUQ0	354	Clavesin-1 OS=Homo sapien	no	N/A	0.910	0.429	0.371	3e-28
Q8BG92	327	Clavesin-2 OS=Mus musculu	yes	N/A	0.910	0.464	0.358	4e-28
A6JFQ6	354	Clavesin-1 OS=Rattus norv	yes	N/A	0.910	0.429	0.371	4e-28
Q9D4C9	354	Clavesin-1 OS=Mus musculu	no	N/A	0.910	0.429	0.371	4e-28

>sp|Q5SPP0|CLVS2_DANRE Clavesin-2 OS=Danio rerio GN=clvs2 PE=2 SV=1

 Score =  127 bits (320), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 99/156 (63%), Gaps = 4/156 (2%)

Query: 9   LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
           LL  Y  +R+ + ++F  L   DP ++  L++ FPGVL + DR GR +L L   NW    
Sbjct: 71  LLAQYFEYRQQNLDMFKNLKATDPGIKQALKDGFPGVLSNLDRYGRKILVLFAANWDQSR 130

Query: 69  FSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWN----QTSIYASPTLLRTMISGLQDC 124
           ++   I +++LL +++++ D ++Q +GFV ++DW+    + +   +P++LR  I GLQD 
Sbjct: 131 YTFVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRLAIEGLQDS 190

Query: 125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
           +PARF  IHF+N+P  +  L  +++PFLK+KTR ++
Sbjct: 191 FPARFGGIHFVNQPWYIHALYTVIRPFLKDKTRKRI 226

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).
Danio rerio (taxid: 7955)

>sp|Q5M7E1|CLVS1_XENLA Clavesin-1 OS=Xenopus laevis GN=clvs1 PE=2 SV=1

 Score =  126 bits (316), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 95/156 (60%), Gaps = 4/156 (2%)

Query: 9   LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
           LL  Y  +R+ + ++F  L   DP ++  L + FPGVL +RD  GR +L L   NW    
Sbjct: 71  LLAQYFQYRQLNLDMFKNLKADDPGIKRALMDGFPGVLENRDHYGRKILLLFAANWDQSR 130

Query: 69  FSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTMISGLQDC 124
            S   I +++LL ++ L+ D ++Q +GF+ ++DW+  S   +    P++LR  I GLQD 
Sbjct: 131 NSFVDILRAILLSLEVLIEDQELQINGFILIIDWSNFSFKQASKLTPSILRLAIEGLQDS 190

Query: 125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
           +PARF  +HF+N+P  +  L  ++KPFLK+KTR ++
Sbjct: 191 FPARFGGVHFVNQPWYIHALYTIIKPFLKDKTRKRI 226

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Xenopus laevis (taxid: 8355)

>sp|Q95KF7|CLVS2_MACFA Clavesin-2 OS=Macaca fascicularis GN=CLVS2 PE=2 SV=2

 Score =  124 bits (311), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 97/156 (62%), Gaps = 4/156 (2%)

Query: 9   LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
           LL  Y  +R+ + ++F      DP ++  L++ FPG L + D  GR +L L   NW    
Sbjct: 71  LLAQYFEYRQQNLDMFKSFKATDPGIKQALKDGFPGGLANLDHYGRKILVLFAANWDQSR 130

Query: 69  FSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWN----QTSIYASPTLLRTMISGLQDC 124
           ++L  I +++LL +++++ D ++Q +GFV ++DW+    + +   +P++LR  I GLQD 
Sbjct: 131 YTLVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRLAIEGLQDS 190

Query: 125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
           +PARF  IHF+N+P  +  L  +++PFLKEKTR ++
Sbjct: 191 FPARFGGIHFVNQPWYIHALYTVIRPFLKEKTRKRI 226

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Macaca fascicularis (taxid: 9541)

>sp|Q5SYC1|CLVS2_HUMAN Clavesin-2 OS=Homo sapiens GN=CLVS2 PE=2 SV=1

 Score =  124 bits (311), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 97/156 (62%), Gaps = 4/156 (2%)

Query: 9   LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
           LL  Y  +R+ + ++F      DP ++  L++ FPG L + D  GR +L L   NW    
Sbjct: 71  LLAQYFEYRQQNLDMFKSFKATDPGIKQALKDGFPGGLANLDHYGRKILVLFAANWDQSR 130

Query: 69  FSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWN----QTSIYASPTLLRTMISGLQDC 124
           ++L  I +++LL +++++ D ++Q +GFV ++DW+    + +   +P++LR  I GLQD 
Sbjct: 131 YTLVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRLAIEGLQDS 190

Query: 125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
           +PARF  IHF+N+P  +  L  +++PFLKEKTR ++
Sbjct: 191 FPARFGGIHFVNQPWYIHALYTVIRPFLKEKTRKRI 226

Required for normal morphology of late endosomes and/or lysosomes in neurons (By similarity). Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Homo sapiens (taxid: 9606)

>sp|A6JUQ6|CLVS2_RAT Clavesin-2 OS=Rattus norvegicus GN=Clvs2 PE=1 SV=1

 Score =  124 bits (311), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 97/156 (62%), Gaps = 4/156 (2%)

Query: 9   LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
           LL  Y  +R+ + ++F      DP ++  L++ FPG L + D  GR +L L   NW    
Sbjct: 71  LLAQYFEYRQQNLDMFKSFKATDPGIKQALKDGFPGGLANLDHYGRKILVLFAANWDQSR 130

Query: 69  FSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWN----QTSIYASPTLLRTMISGLQDC 124
           ++L  I +++LL +++++ D ++Q +GFV ++DW+    + +   +P++LR  I GLQD 
Sbjct: 131 YTLVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRLAIEGLQDS 190

Query: 125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
           +PARF  IHF+N+P  +  L  +++PFLKEKTR ++
Sbjct: 191 FPARFGGIHFVNQPWYIHALYTVIRPFLKEKTRKRI 226

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Rattus norvegicus (taxid: 10116)

>sp|Q5RCA6|CLVS1_PONAB Clavesin-1 OS=Pongo abelii GN=CLVS1 PE=2 SV=1

 Score =  124 bits (310), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 94/156 (60%), Gaps = 4/156 (2%)

Query: 9   LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
           LL  Y  +R+ + ++F      DP ++  L + FPGVL +RD  GR +L L   NW    
Sbjct: 93  LLAQYFQYRQLNLDMFKNFKADDPGIKRALIDGFPGVLENRDHYGRKILLLFAANWDQSR 152

Query: 69  FSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTMISGLQDC 124
            S   I +++LL ++ L+ D ++Q +GF+ ++DW+  S   +    P++L+  I GLQD 
Sbjct: 153 NSFTDILRAILLSLEVLIEDPELQINGFILIIDWSNFSFKQASKLTPSILKLAIEGLQDS 212

Query: 125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
           +PARF  +HF+N+P  +  L  L+KPFLK+KTR ++
Sbjct: 213 FPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKRI 248

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Pongo abelii (taxid: 9601)

>sp|Q8IUQ0|CLVS1_HUMAN Clavesin-1 OS=Homo sapiens GN=CLVS1 PE=1 SV=1

 Score =  124 bits (310), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 94/156 (60%), Gaps = 4/156 (2%)

Query: 9   LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
           LL  Y  +R+ + ++F      DP ++  L + FPGVL +RD  GR +L L   NW    
Sbjct: 93  LLAQYFQYRQLNLDMFKNFKADDPGIKRALIDGFPGVLENRDHYGRKILLLFAANWDQSR 152

Query: 69  FSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTMISGLQDC 124
            S   I +++LL ++ L+ D ++Q +GF+ ++DW+  S   +    P++L+  I GLQD 
Sbjct: 153 NSFTDILRAILLSLEVLIEDPELQINGFILIIDWSNFSFKQASKLTPSILKLAIEGLQDS 212

Query: 125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
           +PARF  +HF+N+P  +  L  L+KPFLK+KTR ++
Sbjct: 213 FPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKRI 248

Required for normal morphology of late endosomes and/or lysosomes in neurons (By similarity). Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Homo sapiens (taxid: 9606)

>sp|Q8BG92|CLVS2_MOUSE Clavesin-2 OS=Mus musculus GN=Clvs2 PE=2 SV=1

 Score =  124 bits (310), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 96/156 (61%), Gaps = 4/156 (2%)

Query: 9   LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
           LL  Y  +R+ + ++F      DP ++  L++ FPG L + D  GR +L L   NW    
Sbjct: 71  LLAQYFEYRQQNLDMFKSFKATDPGIKQALKDGFPGGLANLDHYGRKILVLFAANWDQSR 130

Query: 69  FSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWN----QTSIYASPTLLRTMISGLQDC 124
           ++L  I +++LL +++++ D ++Q +GFV ++DW+    + +   +P +LR  I GLQD 
Sbjct: 131 YTLVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTPNMLRLAIEGLQDS 190

Query: 125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
           +PARF  IHF+N+P  +  L  +++PFLKEKTR ++
Sbjct: 191 FPARFGGIHFVNQPWYIHALYTVIRPFLKEKTRKRI 226

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Mus musculus (taxid: 10090)

>sp|A6JFQ6|CLVS1_RAT Clavesin-1 OS=Rattus norvegicus GN=Clvs1 PE=1 SV=1

 Score =  124 bits (310), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 94/156 (60%), Gaps = 4/156 (2%)

Query: 9   LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
           LL  Y  +R+ + ++F      DP ++  L + FPGVL +RD  GR +L L   NW    
Sbjct: 93  LLAQYFQYRQLNLDMFKNFKADDPGIKRALIDGFPGVLENRDHYGRKILLLFAANWDQSR 152

Query: 69  FSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTMISGLQDC 124
            S   I +++LL ++ L+ D ++Q +GF+ ++DW+  S   +    P++L+  I GLQD 
Sbjct: 153 NSFTDILRAILLSLEVLIEDPELQINGFILIIDWSNFSFKQASKLTPSILKLAIEGLQDS 212

Query: 125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
           +PARF  +HF+N+P  +  L  L+KPFLK+KTR ++
Sbjct: 213 FPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKRI 248

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Rattus norvegicus (taxid: 10116)

>sp|Q9D4C9|CLVS1_MOUSE Clavesin-1 OS=Mus musculus GN=Clvs1 PE=2 SV=1

 Score =  124 bits (310), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 94/156 (60%), Gaps = 4/156 (2%)

Query: 9   LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
           LL  Y  +R+ + ++F      DP ++  L + FPGVL +RD  GR +L L   NW    
Sbjct: 93  LLAQYFQYRQLNLDMFKNFKADDPGIKRALIDGFPGVLENRDHYGRKILLLFAANWDQSR 152

Query: 69  FSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTMISGLQDC 124
            S   I +++LL ++ L+ D ++Q +GF+ ++DW+  S   +    P++L+  I GLQD 
Sbjct: 153 NSFTDILRAILLSLEVLIEDPELQINGFILIIDWSNFSFKQASKLTPSILKLAIEGLQDS 212

Query: 125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
           +PARF  +HF+N+P  +  L  L+KPFLK+KTR ++
Sbjct: 213 FPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKRI 248

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
193685990	287	PREDICTED: clavesin-2-like isoform 1 [Ac	0.958	0.557	0.420	8e-35
158297024	262	AGAP008133-PA [Anopheles gambiae str. PE	0.994	0.633	0.433	2e-34
242007008	272	Cellular retinaldehyde-binding protein,	0.952	0.584	0.429	3e-34
170029318	360	cellular retinaldehyde-binding protein [	0.994	0.461	0.416	7e-33
157110946	358	retinaldehyde binding protein [Aedes aeg	0.994	0.463	0.416	1e-32
332372588	298	unknown [Dendroctonus ponderosae]	0.934	0.523	0.422	8e-32
91088535	281	PREDICTED: similar to retinaldehyde bind	0.934	0.555	0.413	9e-31
405961726	319	Retinaldehyde-binding protein 1-like pro	0.928	0.485	0.371	7e-29
260785885	294	hypothetical protein BRAFLDRAFT_59953 [B	0.910	0.517	0.397	1e-28
357627044	330	cellular retinaldehyde-binding protein [	0.922	0.466	0.409	3e-28

>gi|193685990|ref|XP_001943308.1| PREDICTED: clavesin-2-like isoform 1 [Acyrthosiphon pisum] gi|328713177|ref|XP_003245010.1| PREDICTED: clavesin-2-like isoform 2 [Acyrthosiphon pisum]

 Score =  151 bits (382), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 110/164 (67%), Gaps = 4/164 (2%)

Query: 1   MNPETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLS 60
           MN   ++ L++NY  FR+ H   F +L   DP +Q+ +++ FP VL + DR  R VLF+ 
Sbjct: 76  MNESNALSLIQNYYQFRREHDLWFRRLEPFDPKIQMAIQDGFPSVLSNLDRRSRRVLFMV 135

Query: 61  LRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWN----QTSIYASPTLLRT 116
              W++  + L  I+++LL+ ++ L+ D   QY+GFVF++DW     + ++  SP LL  
Sbjct: 136 CSQWNTERYCLLTIYRALLVSLEHLIQDVNTQYNGFVFIVDWTNFTARQTMNISPRLLHV 195

Query: 117 MISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
           M+ GLQDC+PA+ KA+HFIN+P  +D L+++VKPFLKEKT++K+
Sbjct: 196 MLQGLQDCFPAKIKAVHFINQPWYIDGLMSVVKPFLKEKTKNKI 239

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297024|ref|XP_317327.4| AGAP008133-PA [Anopheles gambiae str. PEST] gi|157014996|gb|EAA12417.4| AGAP008133-PA [Anopheles gambiae str. PEST]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/173 (43%), Positives = 111/173 (64%), Gaps = 7/173 (4%)

Query: 2   NPETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSL 61
           N   +  L+ NY  +R+ +  I  +LS+ D  +QI LR+ FPGVLP+RDR GR VL    
Sbjct: 49  NVNEAFQLIINYHAYRQRNAAILQRLSVLDETIQIALRDGFPGVLPNRDRRGRKVLVFFT 108

Query: 62  RNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTM 117
            NW    +SL  +++++LL ++ LL D + Q +GF+ ++DW   +   S    P +L+ M
Sbjct: 109 ANWDYASYSLVTVYRAMLLTVEKLLEDKQNQANGFIAIVDWTNFTFRQSSNLNPKVLKLM 168

Query: 118 ISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV---GAVLTML 167
           I GLQDC+P RFKAIHFI +P  V+  LA+++PFLKEKTRD++   G+ L+ L
Sbjct: 169 IEGLQDCFPVRFKAIHFIGQPWYVEAALAVIRPFLKEKTRDRIKLHGSNLSTL 221

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007008|ref|XP_002424334.1| Cellular retinaldehyde-binding protein, putative [Pediculus humanus corporis] gi|212507734|gb|EEB11596.1| Cellular retinaldehyde-binding protein, putative [Pediculus humanus corporis]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/163 (42%), Positives = 109/163 (66%), Gaps = 4/163 (2%)

Query: 2   NPETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSL 61
           N + SVDL  NY +FR+ + E+F + + +D  +Q  LR+ FPGVL  RDR GRC++    
Sbjct: 65  NYDDSVDLYCNYYYFRQKNVELFTRFNGQDVLIQQALRDGFPGVLDKRDRKGRCIIVFVA 124

Query: 62  RNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTM 117
             W+   ++L  IF+SLLL ++ L+ +   + +GFVF++DW + S   S    P +L+ M
Sbjct: 125 SRWNCSCYTLFVIFRSLLLSLEYLIAEEINKKNGFVFVIDWTEFSFKQSSNLAPKILKLM 184

Query: 118 ISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
           I GLQDC+PA+FK  HFIN+P  V++ L ++KPFLKEK+++++
Sbjct: 185 IEGLQDCFPAKFKGFHFINQPWYVEMALTVIKPFLKEKSKNRI 227

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170029318|ref|XP_001842540.1| cellular retinaldehyde-binding protein [Culex quinquefasciatus] gi|167881643|gb|EDS45026.1| cellular retinaldehyde-binding protein [Culex quinquefasciatus]

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 110/173 (63%), Gaps = 7/173 (4%)

Query: 2   NPETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSL 61
           N   +  L+ NY  +R+ +  +  +LS+ D  +Q+ LR+ FPGVLP+RDR GR VL    
Sbjct: 76  NVNDAFQLVINYHAYRQRNGSLLQRLSVLDENIQLALRDGFPGVLPNRDRRGRKVLIFLA 135

Query: 62  RNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTM 117
            NW    +SL  +++++LL ++ LL D + Q +GF+ ++DW   +   S    P +L+ M
Sbjct: 136 ANWDYSSYSLVTVYRAMLLSIEKLLEDKQNQANGFIAIVDWTNFTFRQSSNLNPKVLKLM 195

Query: 118 ISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV---GAVLTML 167
           I GLQDC+P RFKAIHFI +P  V+  LA+++PFLKEKTR+++   G  L+ L
Sbjct: 196 IEGLQDCFPVRFKAIHFIGQPWYVEAALAVIRPFLKEKTRERIKLHGGNLSTL 248

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157110946|ref|XP_001651322.1| retinaldehyde binding protein [Aedes aegypti] gi|108878569|gb|EAT42794.1| AAEL005701-PA [Aedes aegypti]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 110/173 (63%), Gaps = 7/173 (4%)

Query: 2   NPETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSL 61
           N   +  L+ NY  +R+ +  +  +LS+ D  +Q+ LR+ FPGVLP+RDR GR VL    
Sbjct: 75  NVNDAFQLVINYHAYRQRNGPLLQRLSVLDENIQLALRDGFPGVLPNRDRRGRKVLIFLA 134

Query: 62  RNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTM 117
            NW    +SL  +++++LL ++ LL D + Q +GF+ ++DW   +   S    P +L+ M
Sbjct: 135 GNWDYSSYSLVTVYRAMLLSLEKLLEDKQNQANGFIAIVDWTNFTFRQSSNLNPKVLKLM 194

Query: 118 ISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV---GAVLTML 167
           I GLQDC+P RFKAIHFI +P  V+  LA+++PFLKEKTR+++   G  L+ L
Sbjct: 195 IEGLQDCFPVRFKAIHFIGQPWYVEAALAVIRPFLKEKTRERIKLHGGNLSTL 247

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372588|gb|AEE61436.1| unknown [Dendroctonus ponderosae]

 Score =  141 bits (356), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 103/161 (63%), Gaps = 5/161 (3%)

Query: 4   ETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRN 63
           E S + L+N+  +RK +P+IF  L+L    V+  L N  PGVL D+DR GRCVL L+  N
Sbjct: 90  EDSFETLKNFYWYRKRNPDIFRDLNLDSADVRKALENGLPGVLKDKDRKGRCVLLLTANN 149

Query: 64  WSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTMIS 119
           W    +SL +I++++L+ ++ +  D   Q +G V ++DW + S     +  P++LR MI 
Sbjct: 150 WDCS-YSLLSIYRAMLVCLEQVTNDLHNQANGVVVIVDWTEFSYKQTSHLKPSILRLMIE 208

Query: 120 GLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
           GLQDC+P RFK IHFI +P  VD  L ++KPFLKE+ ++ +
Sbjct: 209 GLQDCFPVRFKGIHFIGQPWYVDAALTVIKPFLKEEIKEHI 249

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088535|ref|XP_972345.1| PREDICTED: similar to retinaldehyde binding protein [Tribolium castaneum] gi|270011712|gb|EFA08160.1| hypothetical protein TcasGA2_TC005781 [Tribolium castaneum]

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 67/162 (41%), Positives = 106/162 (65%), Gaps = 6/162 (3%)

Query: 3   PETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLR 62
           P+T + L++NY ++RK +  IF   +   P ++  L +  PGVLP +DR GRCVL L+  
Sbjct: 69  PDTYL-LVQNYYYYRKKNHIIFENFTPSAPDIKNALESSLPGVLPSKDRKGRCVLILNAT 127

Query: 63  NWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTMI 118
           NW  + +SL +I++++LL ++ L+ +   Q  GFV ++DW + S   S    P++L+ MI
Sbjct: 128 NWDCN-YSLISIYRAILLSLEHLVNEVHNQARGFVVIVDWTEFSFRQSTNLKPSILKLMI 186

Query: 119 SGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
            GLQDC+PA+FK IHFI +P  V+  L  +KPFLKEK ++++
Sbjct: 187 EGLQDCFPAKFKGIHFIGQPWYVEAALTFIKPFLKEKIKERI 228

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405961726|gb|EKC27481.1| Retinaldehyde-binding protein 1-like protein 2 [Crassostrea gigas]

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 99/159 (62%), Gaps = 4/159 (2%)

Query: 6   SVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWS 65
           S  LL  Y  FR+ +P +F      +  ++  L +  P VLP+ D+ GR ++ L   NW 
Sbjct: 68  SFKLLARYFEFRQNNPSLFKNFIASEAGIKASLYDGLPSVLPNCDQKGRKIIVLFASNWD 127

Query: 66  SHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYAS----PTLLRTMISGL 121
           +  + L ++++++LL ++ L+ D   Q +GFVF+LDW+Q +   S    P +L+ M+ GL
Sbjct: 128 NGRYQLPSVYRAILLTLEKLIDDEACQINGFVFILDWSQFTFNQSRSLNPKVLKQMVEGL 187

Query: 122 QDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
           QDC+PARF +IHF+N+P  ++ +  ++ PFLKEK+R K+
Sbjct: 188 QDCFPARFGSIHFVNQPWYIEAICKIILPFLKEKSRRKI 226

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|260785885|ref|XP_002587990.1| hypothetical protein BRAFLDRAFT_59953 [Branchiostoma floridae] gi|229273146|gb|EEN44001.1| hypothetical protein BRAFLDRAFT_59953 [Branchiostoma floridae]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 94/156 (60%), Gaps = 4/156 (2%)

Query: 9   LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
           L   Y  +R+ H  +F   +L++P VQ  L + FPGVL D D  GR +L     NW    
Sbjct: 71  LYARYYEYRQKHSVMFKHCTLENPGVQQALLDGFPGVLEDTDHFGRKILVFYPANWDVTR 130

Query: 69  FSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYA----SPTLLRTMISGLQDC 124
           +S+E +  ++LL ++ ++ D ++Q  GF  ++DW+Q S       SP  +R +I GLQD 
Sbjct: 131 YSIEHVLLAILLSLEQMIQDPEVQVHGFAIIVDWSQFSFRQAARLSPAQMRLVIEGLQDS 190

Query: 125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
           +PARF  IHFIN+P  +D    ++KPFLKEKTR+++
Sbjct: 191 FPARFGGIHFINQPWYIDAAFTILKPFLKEKTRERI 226

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|357627044|gb|EHJ76881.1| cellular retinaldehyde-binding protein [Danaus plexippus]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 99/161 (61%), Gaps = 7/161 (4%)

Query: 4   ETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRN 63
           + S +LL  Y   R+ HPE++      D  V   L +  PGVL  RDR GRCVL +   N
Sbjct: 75  QQSFELLVRYHQHRREHPELWAN---ADGGVLRALADGLPGVLAQRDRRGRCVLIMFASN 131

Query: 64  WSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYASPTL----LRTMIS 119
           W+ H   L ++F++LLL ++  L + + Q +G+V ++DW + +   S +L    L+ MI 
Sbjct: 132 WTPHACPLISVFRALLLTLERTLNEVQNQANGYVIVVDWTEFTFKQSCSLQAKILKMMID 191

Query: 120 GLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
            LQDC PARFK+IHFI +P  V+  LA++KP+LK KTR+++
Sbjct: 192 CLQDCMPARFKSIHFIGQPWYVETALAVIKPYLKAKTRERI 232

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
ZFIN|ZDB-GENE-041014-313	329	clvs2 "clavesin 2" [Danio reri	0.910	0.462	0.378	8.4e-26
UNIPROTKB|Q5M7E1	332	clvs1 "Clavesin-1" [Xenopus la	0.910	0.457	0.371	1.4e-25
UNIPROTKB|E2RE25	354	CLVS1 "Uncharacterized protein	0.910	0.429	0.365	5.9e-25
UNIPROTKB|Q8IUQ0	354	CLVS1 "Clavesin-1" [Homo sapie	0.910	0.429	0.365	5.9e-25
UNIPROTKB|F1RT89	354	CLVS1 "Uncharacterized protein	0.910	0.429	0.365	5.9e-25
UNIPROTKB|Q5RCA6	354	CLVS1 "Clavesin-1" [Pongo abel	0.910	0.429	0.365	5.9e-25
MGI|MGI:1921688	354	Clvs1 "clavesin 1" [Mus muscul	0.910	0.429	0.365	5.9e-25
RGD|1564200	354	Clvs1 "clavesin 1" [Rattus nor	0.910	0.429	0.365	5.9e-25
UNIPROTKB|F1LRF3	351	Clvs1 "Clavesin-1" [Rattus nor	0.910	0.433	0.365	5.9e-25
UNIPROTKB|E1C6S0	327	CLVS2 "Uncharacterized protein	0.910	0.464	0.371	7.6e-25

ZFIN|ZDB-GENE-041014-313 clvs2 "clavesin 2" [Danio rerio (taxid:7955)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 59/156 (37%), Positives = 90/156 (57%)

Query:     9 LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
             LL  Y  +R+ + ++F  L   DP ++  L++ FPGVL + DR GR +L L   NW    
Sbjct:    71 LLAQYFEYRQQNLDMFKNLKATDPGIKQALKDGFPGVLSNLDRYGRKILVLFAANWDQSR 130

Query:    69 FSLEAIFKXXXXXXXXXXVDTKIQYSGFVFLLDW-NQTSIYAS---PTLLRTMISGLQDC 124
             ++   I +           D ++Q +GFV ++DW N T   AS   P++LR  I GLQD 
Sbjct:   131 YTFVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRLAIEGLQDS 190

Query:   125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
             +PARF  IHF+N+P  +  L  +++PFLK+KTR ++
Sbjct:   191 FPARFGGIHFVNQPWYIHALYTVIRPFLKDKTRKRI 226

GO:0006810 "transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0007040 "lysosome organization" evidence=ISS

GO:0005768 "endosome" evidence=IEA;ISS

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISS

GO:0030136 "clathrin-coated vesicle" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

UNIPROTKB|Q5M7E1 clvs1 "Clavesin-1" [Xenopus laevis (taxid:8355)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 58/156 (37%), Positives = 88/156 (56%)

Query:     9 LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
             LL  Y  +R+ + ++F  L   DP ++  L + FPGVL +RD  GR +L L   NW    
Sbjct:    71 LLAQYFQYRQLNLDMFKNLKADDPGIKRALMDGFPGVLENRDHYGRKILLLFAANWDQSR 130

Query:    69 FSLEAIFKXXXXXXXXXXVDTKIQYSGFVFLLDWNQTSI-YAS---PTLLRTMISGLQDC 124
              S   I +           D ++Q +GF+ ++DW+  S   AS   P++LR  I GLQD 
Sbjct:   131 NSFVDILRAILLSLEVLIEDQELQINGFILIIDWSNFSFKQASKLTPSILRLAIEGLQDS 190

Query:   125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
             +PARF  +HF+N+P  +  L  ++KPFLK+KTR ++
Sbjct:   191 FPARFGGVHFVNQPWYIHALYTIIKPFLKDKTRKRI 226

GO:0005768 "endosome" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0007040 "lysosome organization" evidence=ISS

GO:0030136 "clathrin-coated vesicle" evidence=ISS

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISS

UNIPROTKB|E2RE25 CLVS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 57/156 (36%), Positives = 87/156 (55%)

Query:     9 LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
             LL  Y  +R+ + ++F      DP ++  L + FPGVL +RD  GR +L L   NW    
Sbjct:    93 LLAQYFQYRQLNLDMFKNFKADDPGIKRALIDGFPGVLENRDHYGRKILLLFAANWDQSR 152

Query:    69 FSLEAIFKXXXXXXXXXXVDTKIQYSGFVFLLDWNQTSI-YAS---PTLLRTMISGLQDC 124
              S   I +           D ++Q +GF+ ++DW+  S   AS   P++L+  I GLQD 
Sbjct:   153 NSFTDILRAILLSLEVLIEDPELQINGFILIIDWSNFSFKQASKLTPSILKLAIEGLQDS 212

Query:   125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
             +PARF  +HF+N+P  +  L  L+KPFLK+KTR ++
Sbjct:   213 FPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKRI 248

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|Q8IUQ0 CLVS1 "Clavesin-1" [Homo sapiens (taxid:9606)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 57/156 (36%), Positives = 87/156 (55%)

Query:     9 LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
             LL  Y  +R+ + ++F      DP ++  L + FPGVL +RD  GR +L L   NW    
Sbjct:    93 LLAQYFQYRQLNLDMFKNFKADDPGIKRALIDGFPGVLENRDHYGRKILLLFAANWDQSR 152

Query:    69 FSLEAIFKXXXXXXXXXXVDTKIQYSGFVFLLDWNQTSI-YAS---PTLLRTMISGLQDC 124
              S   I +           D ++Q +GF+ ++DW+  S   AS   P++L+  I GLQD 
Sbjct:   153 NSFTDILRAILLSLEVLIEDPELQINGFILIIDWSNFSFKQASKLTPSILKLAIEGLQDS 212

Query:   125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
             +PARF  +HF+N+P  +  L  L+KPFLK+KTR ++
Sbjct:   213 FPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKRI 248

GO:0005215 "transporter activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0007040 "lysosome organization" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0030136 "clathrin-coated vesicle" evidence=ISS

UNIPROTKB|F1RT89 CLVS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 57/156 (36%), Positives = 87/156 (55%)

Query:     9 LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
             LL  Y  +R+ + ++F      DP ++  L + FPGVL +RD  GR +L L   NW    
Sbjct:    93 LLAQYFQYRQLNLDMFKNFKADDPGIKRALIDGFPGVLENRDHYGRKILLLFAANWDQSR 152

Query:    69 FSLEAIFKXXXXXXXXXXVDTKIQYSGFVFLLDWNQTSI-YAS---PTLLRTMISGLQDC 124
              S   I +           D ++Q +GF+ ++DW+  S   AS   P++L+  I GLQD 
Sbjct:   153 NSFTDILRAILLSLEVLIEDPELQINGFILIIDWSNFSFKQASKLTPSILKLAIEGLQDS 212

Query:   125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
             +PARF  +HF+N+P  +  L  L+KPFLK+KTR ++
Sbjct:   213 FPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKRI 248

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|Q5RCA6 CLVS1 "Clavesin-1" [Pongo abelii (taxid:9601)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 57/156 (36%), Positives = 87/156 (55%)

Query:     9 LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
             LL  Y  +R+ + ++F      DP ++  L + FPGVL +RD  GR +L L   NW    
Sbjct:    93 LLAQYFQYRQLNLDMFKNFKADDPGIKRALIDGFPGVLENRDHYGRKILLLFAANWDQSR 152

Query:    69 FSLEAIFKXXXXXXXXXXVDTKIQYSGFVFLLDWNQTSI-YAS---PTLLRTMISGLQDC 124
              S   I +           D ++Q +GF+ ++DW+  S   AS   P++L+  I GLQD 
Sbjct:   153 NSFTDILRAILLSLEVLIEDPELQINGFILIIDWSNFSFKQASKLTPSILKLAIEGLQDS 212

Query:   125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
             +PARF  +HF+N+P  +  L  L+KPFLK+KTR ++
Sbjct:   213 FPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKRI 248

GO:0005768 "endosome" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0007040 "lysosome organization" evidence=ISS

GO:0030136 "clathrin-coated vesicle" evidence=ISS

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISS

MGI|MGI:1921688 Clvs1 "clavesin 1" [Mus musculus (taxid:10090)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 57/156 (36%), Positives = 87/156 (55%)

Query:     9 LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
             LL  Y  +R+ + ++F      DP ++  L + FPGVL +RD  GR +L L   NW    
Sbjct:    93 LLAQYFQYRQLNLDMFKNFKADDPGIKRALIDGFPGVLENRDHYGRKILLLFAANWDQSR 152

Query:    69 FSLEAIFKXXXXXXXXXXVDTKIQYSGFVFLLDWNQTSI-YAS---PTLLRTMISGLQDC 124
              S   I +           D ++Q +GF+ ++DW+  S   AS   P++L+  I GLQD 
Sbjct:   153 NSFTDILRAILLSLEVLIEDPELQINGFILIIDWSNFSFKQASKLTPSILKLAIEGLQDS 212

Query:   125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
             +PARF  +HF+N+P  +  L  L+KPFLK+KTR ++
Sbjct:   213 FPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKRI 248

GO:0005215 "transporter activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005768 "endosome" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0007040 "lysosome organization" evidence=ISO

GO:0008289 "lipid binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISO

RGD|1564200 Clvs1 "clavesin 1" [Rattus norvegicus (taxid:10116)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 57/156 (36%), Positives = 87/156 (55%)

Query:     9 LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
             LL  Y  +R+ + ++F      DP ++  L + FPGVL +RD  GR +L L   NW    
Sbjct:    93 LLAQYFQYRQLNLDMFKNFKADDPGIKRALIDGFPGVLENRDHYGRKILLLFAANWDQSR 152

Query:    69 FSLEAIFKXXXXXXXXXXVDTKIQYSGFVFLLDWNQTSI-YAS---PTLLRTMISGLQDC 124
              S   I +           D ++Q +GF+ ++DW+  S   AS   P++L+  I GLQD 
Sbjct:   153 NSFTDILRAILLSLEVLIEDPELQINGFILIIDWSNFSFKQASKLTPSILKLAIEGLQDS 212

Query:   125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
             +PARF  +HF+N+P  +  L  L+KPFLK+KTR ++
Sbjct:   213 FPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKRI 248

GO:0005215 "transporter activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005768 "endosome" evidence=ISO;ISS

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0007040 "lysosome organization" evidence=IMP

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISO;ISS

UNIPROTKB|F1LRF3 Clvs1 "Clavesin-1" [Rattus norvegicus (taxid:10116)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 57/156 (36%), Positives = 87/156 (55%)

Query:     9 LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
             LL  Y  +R+ + ++F      DP ++  L + FPGVL +RD  GR +L L   NW    
Sbjct:    90 LLAQYFQYRQLNLDMFKNFKADDPGIKRALIDGFPGVLENRDHYGRKILLLFAANWDQSR 149

Query:    69 FSLEAIFKXXXXXXXXXXVDTKIQYSGFVFLLDWNQTSI-YAS---PTLLRTMISGLQDC 124
              S   I +           D ++Q +GF+ ++DW+  S   AS   P++L+  I GLQD 
Sbjct:   150 NSFTDILRAILLSLEVLIEDPELQINGFILIIDWSNFSFKQASKLTPSILKLAIEGLQDS 209

Query:   125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
             +PARF  +HF+N+P  +  L  L+KPFLK+KTR ++
Sbjct:   210 FPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKRI 245

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|E1C6S0 CLVS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 58/156 (37%), Positives = 88/156 (56%)

Query:     9 LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
             LL  Y  +R+ + ++F      DP ++  L++ FPG L + D  GR +L L   NW    
Sbjct:    71 LLAQYFEYRQQNLDMFKSFKATDPGIKQALKDGFPGGLANLDHYGRKILVLFAANWDQSR 130

Query:    69 FSLEAIFKXXXXXXXXXXVDTKIQYSGFVFLLDW-NQTSIYAS---PTLLRTMISGLQDC 124
             ++L  I +           D ++Q +GFV ++DW N T   AS   P++LR  I GLQD 
Sbjct:   131 YTLVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRLAIEGLQDS 190

Query:   125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
             +PARF  IHF+N+P  +  L  +++PFLKEKTR ++
Sbjct:   191 FPARFGGIHFVNQPWYIHALYTVIRPFLKEKTRKRI 226

GO:0005215 "transporter activity" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	167
cd00170	157	cd00170, SEC14, Sec14p-like lipid-binding domain	2e-22
pfam00650	152	pfam00650, CRAL_TRIO, CRAL/TRIO domain	9e-21
smart00516	158	smart00516, SEC14, Domain in homologues of a S	8e-18

>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain

 Score = 87.4 bits (217), Expect = 2e-22
 Identities = 46/121 (38%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 44  GVLPDRDRNGRCVLFLSLRN-WSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDW 102
           G L  RD+ GR VL +   N   S     E + + L+  ++ LL +   Q  GFV ++D 
Sbjct: 11  GYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDL 70

Query: 103 NQTS---IYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDK 159
              S   +   P+LL+ ++  LQD YP R KA++ IN P    VL  +VKPFL EKTR K
Sbjct: 71  KGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKK 130

Query: 160 V 160
           +
Sbjct: 131 I 131

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 157

>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain

 Score = 82.7 bits (205), Expect = 9e-21
 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 5/123 (4%)

Query: 43  PGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKI-QYSGFVFLLD 101
            G L  RD+ GR VL+L          SLE + + L+L+++  L+     Q  G   ++D
Sbjct: 3   KGYLHGRDKEGRPVLYLRPGRHDPKKSSLEELVRFLVLVLERALLLLPEGQIEGITVIID 62

Query: 102 WNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTR 157
               S+        + L+ ++  LQD YP R   I  +N P   +V+  L+KPFL  KTR
Sbjct: 63  MKGLSLSNMDKWPISFLKKILKILQDNYPERLGKILIVNAPWIFNVIWKLIKPFLDPKTR 122

Query: 158 DKV 160
           +K+
Sbjct: 123 EKI 125

Length = 152

>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S

 Score = 75.4 bits (186), Expect = 8e-18
 Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 3/114 (2%)

Query: 50  DRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQY--SGFVFLLDWNQTSI 107
           D++GR VL      +     +LE + + L+ +++ +L + K      GF  + D    S+
Sbjct: 16  DKDGRPVLIERAGRFDLKSVTLEELLRYLVYVLEKILQEEKKTGGIEGFTVIFDLKGLSM 75

Query: 108 YASPT-LLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
                 +LR ++  LQD YP R   ++ IN P    VL  ++KPFL EKTR+K+
Sbjct: 76  SNPDLSVLRKILKILQDHYPERLGKVYIINPPWFFRVLWKIIKPFLDEKTREKI 129

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
KOG1470|consensus	324		100.0
PF00650	159	CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T	99.97
smart00516	158	SEC14 Domain in homologues of a S. cerevisiae phos	99.97
KOG1471|consensus	317		99.96
cd00170	157	SEC14 Sec14p-like lipid-binding domain. Found in s	99.94
PF13716	149	CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q	99.45
KOG4406|consensus	467		98.66

>KOG1470|consensus

Probab=100.00  E-value=1e-36  Score=229.29  Aligned_cols=161  Identities=24%  Similarity=0.356  Sum_probs=146.1

Q ss_pred             CChHHHHHHHHHHHHHHhhCCCccCCCCCCCHHHHHHHhhcCCccCCCCCCCCCEEEEEecCCcCCCCCCHHHHHHHHHH
Q psy5457           1 MNPETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLL   80 (167)
Q Consensus         1 f~v~~A~~~l~~~~~~R~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~g~d~~Gr~V~~~r~~~~~~~~~~~~~~~~~~~~   80 (167)
                      ||+++|.+|+.+++.||+.++.-  . .+..+++...++.|.++.. |.|++||||+|+|+..+.++..++++..|+++|
T Consensus        61 wnv~kA~kml~~tL~WR~~~~~~--~-~~~~~Ev~~e~~tGK~yi~-G~D~~gRPVl~~~~~~~~qn~~t~~~~~r~~Vy  136 (324)
T KOG1470|consen   61 WNVKKASKMLSNTLKWRRSFGPE--E-VIEADEVAAELETGKAYIL-GHDKDGRPVLYLRPRPHRQNTKTQKELERLLVY  136 (324)
T ss_pred             CcHHHHHHHHHHHhHHHHhcCCc--c-ccCHHHHHHHhhcCcEEEe-cccCCCCeEEEEecCCCCCCCCCHHHHHHHHHH
Confidence            79999999999999999998632  1 1334458888999997654 899999999999998888899999999999999


Q ss_pred             HHHHHhhccCcceecEEEEEecCCCcc-ccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHHHhhhhHHHhcc
Q psy5457          81 LMDSLLVDTKIQYSGFVFLLDWNQTSI-YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDK  159 (167)
Q Consensus        81 ~~e~~~~~~~~~~~g~v~I~D~~g~~~-~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k~fl~~k~~~k  159 (167)
                      ++|.++.-.+.+++++++++|++|+|+ +.+.+..|.++.++|+|||||++..+++|+||+|..+|+++|||++++|++|
T Consensus       137 ~mE~Ai~~lp~~qe~~~~L~D~~~fs~sN~d~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~K  216 (324)
T KOG1470|consen  137 TLENAILFLPPGQEQFVWLFDLTGFSMSNPDIKFLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASK  216 (324)
T ss_pred             HHHHHHHhCCCCcceEEEEEecccCcccCCCcHHHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhce
Confidence            999999877667888999999999995 7899999999999999999999999999999999999999999999999999


Q ss_pred             eeEeec
Q psy5457         160 VGAVLT  165 (167)
Q Consensus       160 i~~~~~  165 (167)
                      |+|+.+
T Consensus       217 v~F~~~  222 (324)
T KOG1470|consen  217 VKFVEP  222 (324)
T ss_pred             eEEecC
Confidence            999875

>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle

Probab=99.97  E-value=6.2e-32  Score=188.96  Aligned_cols=126  Identities=33%  Similarity=0.502  Sum_probs=103.8

Q ss_pred             hcCCccCCCCCCCCCEEEEEecCCcCCCCCCHHHHHHHHHHHHHHHhhc-cC-cceecEEEEEecCCCcc-ccC---HHH
Q psy5457          40 NRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVD-TK-IQYSGFVFLLDWNQTSI-YAS---PTL  113 (167)
Q Consensus        40 ~~~~~~l~g~d~~Gr~V~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~-~~~~g~v~I~D~~g~~~-~~~---~~~  113 (167)
                      ++...+++|+|++||||+++|++++++++.+.+++.++.++++|.+++. ++ .+.+|+++|+|++|+++ +++   ++.
T Consensus         5 ~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~~~~~   84 (159)
T PF00650_consen    5 KSGPFYLHGRDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSLSNFDWWPISF   84 (159)
T ss_dssp             TTSCEEEEEE-TTS-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--HHHHHCHHHHH
T ss_pred             CCeeEEECCCCCCcCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceEeccccchhhh
Confidence            3444678899999999999999999999999999999999999999854 33 68999999999999994 555   889


Q ss_pred             HHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHHHhhhhHHHhcceeEeec
Q psy5457         114 LRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKVGAVLT  165 (167)
Q Consensus       114 ~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k~fl~~k~~~ki~~~~~  165 (167)
                      +|.+++++|++||+|++++|++|+|++++.+|++++|||+++|++||+++++
T Consensus        85 ~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~  136 (159)
T PF00650_consen   85 LKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSG  136 (159)
T ss_dssp             HHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECT
T ss_pred             hhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECC
Confidence            9999999999999999999999999999999999999999999999999954

Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....

>smart00516 SEC14 Domain in homologues of a S

Probab=99.97  E-value=1.7e-29  Score=176.37  Aligned_cols=127  Identities=30%  Similarity=0.488  Sum_probs=117.1

Q ss_pred             HhhcCCccCCCCCCCCCEEEEEecCCcCCCCCCHHHHHHHHHHHHHHHhhc--cCcceecEEEEEecCCCc-cccCHHHH
Q psy5457          38 LRNRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVD--TKIQYSGFVFLLDWNQTS-IYASPTLL  114 (167)
Q Consensus        38 l~~~~~~~l~g~d~~Gr~V~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~~g~v~I~D~~g~~-~~~~~~~~  114 (167)
                      ++..+..+. |+|++||||+++++++++++..+.++++++.++.+|.++++  ++.+++|+++|+|++|++ .+++++.+
T Consensus         5 ~~~~~~~~~-g~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~l   83 (158)
T smart00516        5 GKAYIPGGR-GYDKDGRPVLIFRAGRFDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSNPDLSVL   83 (158)
T ss_pred             HHHhcCCCC-CCCCCcCEEEEEeccccccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCcccccHHHH
Confidence            344444444 89999999999999999999999999999999999999986  667899999999999998 57889999


Q ss_pred             HHHHHHhhhcccceeeeEEEEeCchHHHHHHHHHHhhhhHHHhcceeEeec
Q psy5457         115 RTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKVGAVLT  165 (167)
Q Consensus       115 k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k~fl~~k~~~ki~~~~~  165 (167)
                      |++++.+|++||+|++++||+|+|++++++|+++++|+++++++||+++++
T Consensus        84 k~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~  134 (158)
T smart00516       84 RKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGN  134 (158)
T ss_pred             HHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCC
Confidence            999999999999999999999999999999999999999999999999985

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>KOG1471|consensus

Probab=99.96  E-value=3.3e-29  Score=193.30  Aligned_cols=157  Identities=32%  Similarity=0.517  Sum_probs=128.0

Q ss_pred             CChHHHHHHHHHHHHHHhhC--CCccCCCCCCCHHHHHHHhhcCCccCCCCCCCCCEEEEEecCCcCCCC----------
Q psy5457           1 MNPETSVDLLENYIHFRKTH--PEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL----------   68 (167)
Q Consensus         1 f~v~~A~~~l~~~~~~R~~~--~~~~~~~~~~~~~~~~~l~~~~~~~l~g~d~~Gr~V~~~r~~~~~~~~----------   68 (167)
                      ||+++|++++.+++.||.++  ++++.+.+..    .+. ....+...+|.|++|+|+++.+.|..+...          
T Consensus        57 f~ve~a~~~l~~~l~~r~~~~~d~i~~~~~~~----~~~-~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~  131 (317)
T KOG1471|consen   57 FDVEKAKQMLKRYLNWRKRNKLDEIFEDFEED----DEL-LKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDY  131 (317)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCccHhhccccc----hhh-hhhccccccccCCCCCEEEEeccCCCCcccceeeccHHHH
Confidence            79999999999999999985  5776652221    122 224445667999999999999999987653          


Q ss_pred             --CCHHHHHHHHHHHHHHHhhccCcceecEEEEEecCCCcc----ccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHH
Q psy5457          69 --FSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVD  142 (167)
Q Consensus        69 --~~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D~~g~~~----~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~  142 (167)
                        ....+..+...+.+|....+.+.+++|++.|+|++|+++    +..++.+++++..+|++||++++++||||+|++|+
T Consensus       132 ~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~  211 (317)
T KOG1471|consen  132 LKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFS  211 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHH
Confidence              234445555556666666666678999999999999983    46788999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHhcceeE
Q psy5457         143 VLLALVKPFLKEKTRDKVGA  162 (167)
Q Consensus       143 ~~~~~~k~fl~~k~~~ki~~  162 (167)
                      ++|+++||||+++|++||++
T Consensus       212 ~~~~~ikpfL~~kt~~ki~~  231 (317)
T KOG1471|consen  212 ALWKVVKPFLDEKTRKKIHV  231 (317)
T ss_pred             HHHHHHhccCCHHHHhhhee
Confidence            99999999999999999993

>cd00170 SEC14 Sec14p-like lipid-binding domain

Probab=99.94  E-value=3e-26  Score=158.94  Aligned_cols=124  Identities=36%  Similarity=0.549  Sum_probs=110.1

Q ss_pred             CCccCCCCCCCCCEEEEEecCCcCCCC-CCHHHHHHHHHHHHHHHhhccCcceecEEEEEecCCCcc-cc--CHHHHHHH
Q psy5457          42 FPGVLPDRDRNGRCVLFLSLRNWSSHL-FSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSI-YA--SPTLLRTM  117 (167)
Q Consensus        42 ~~~~l~g~d~~Gr~V~~~r~~~~~~~~-~~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D~~g~~~-~~--~~~~~k~~  117 (167)
                      .+....|+|++||||++++.++.++.. .+.++.+++.++.+|.++.++..+.+|+++|+|++|+++ ++  +++.+|++
T Consensus         9 ~~~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~k~~   88 (157)
T cd00170           9 KVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLLPDPSLLKKI   88 (157)
T ss_pred             cccccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCChhccchhHHHHHHH
Confidence            334555689999999999999655543 345999999999999999987776789999999999994 44  77889999


Q ss_pred             HHHhhhcccceeeeEEEEeCchHHHHHHHHHHhhhhHHHhcceeEeec
Q psy5457         118 ISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKVGAVLT  165 (167)
Q Consensus       118 ~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k~fl~~k~~~ki~~~~~  165 (167)
                      ++.++++||++++++|++|+|++++.+|+++++|+++++++||+++++
T Consensus        89 ~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~  136 (157)
T cd00170          89 LKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGS  136 (157)
T ss_pred             HHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecC
Confidence            999999999999999999999999999999999999999999999975

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A

Probab=99.45  E-value=1.8e-13  Score=94.79  Aligned_cols=115  Identities=23%  Similarity=0.301  Sum_probs=81.9

Q ss_pred             CCCCCCCCCEEEEEecCCcCCCCCCHHHHHHHHHHHHHHHhhccCcceecEEEEEecCCCcc--ccCHHHHHHHHHHhhh
Q psy5457          46 LPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSI--YASPTLLRTMISGLQD  123 (167)
Q Consensus        46 l~g~d~~Gr~V~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D~~g~~~--~~~~~~~k~~~~~~~~  123 (167)
                      ..|+|++||||+++..... ++..   ++-+...|++..+...  ....++++|+|++|.+.  ..+.+.++++.+.++.
T Consensus         6 ~gG~d~~g~pV~~~~~~~~-~~~~---~~~~ll~yl~~~l~~~--~~~~~f~vVid~~~~~~~~~~~~~~l~~~~~~l~~   79 (149)
T PF13716_consen    6 PGGRDREGRPVVVFIASRL-PSSD---DLERLLLYLLSTLSEE--VVDKPFSVVIDHTGFSRSSEPSLSWLKQLYKLLPR   79 (149)
T ss_dssp             EEEEBTTS-EEEEEEGGG--C-TT---HHHHHHHHHHHHH-TT--TTTS-EEEEEE-TT--GGG---HHHHHHTTTSS-H
T ss_pred             ecccCCCcCEEEEEECCcC-cchh---hHHHHHHHHHHhhhHH--hcCCCEEEEEEcCCCccccCCchHHHHHHHHHHHH
Confidence            3489999999999997777 4333   6666666666655332  22466999999999984  3466789999999999


Q ss_pred             cccceeeeEEEEeCchHHHHHH-HHHHhhhhHHH-hcceeEeecC
Q psy5457         124 CYPARFKAIHFINEPVQVDVLL-ALVKPFLKEKT-RDKVGAVLTM  166 (167)
Q Consensus       124 ~yP~rl~~i~ivn~p~~~~~~~-~~~k~fl~~k~-~~ki~~~~~~  166 (167)
                      .|+.+++++|++|++++++.+. .+.+++.+++. ..|+..+++.
T Consensus        80 ~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~sl  124 (149)
T PF13716_consen   80 KYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSSL  124 (149)
T ss_dssp             HHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESST
T ss_pred             HHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECCH
Confidence            9999999999999999999999 66688889998 9999988764

>KOG4406|consensus

Probab=98.66  E-value=5.2e-07  Score=70.55  Aligned_cols=132  Identities=16%  Similarity=0.189  Sum_probs=96.1

Q ss_pred             CCCCHHHHHHHhh--cCCccCCC-CCCCCCEEEEEecCCcCCC-CCCHHHHHHHHHHHHHHHhhccCcceecEEEEEecC
Q psy5457          28 SLKDPYVQICLRN--RFPGVLPD-RDRNGRCVLFLSLRNWSSH-LFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWN  103 (167)
Q Consensus        28 ~~~~~~~~~~l~~--~~~~~l~g-~d~~Gr~V~~~r~~~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D~~  103 (167)
                      .|.+..+...++.  +......+ .|++||.|+++-..++.+. +.+-..++++.++.+|..++..      .+.++=-.
T Consensus        65 ~p~ed~fyd~~~H~~ei~qvi~~~~D~~gr~iivv~a~rlp~~~eld~~~li~~~v~~id~~Ve~D------Yt~vYfh~  138 (467)
T KOG4406|consen   65 EPKEDPFYDIARHEREILQVIGDAKDKQGRKIIVVYACRLPSSSELDDIRLISYLVYTIDKYVEND------YTLVYFHH  138 (467)
T ss_pred             CcccccHHHHHHhhhheeeeccCcccccCCeeEEEEEecCCchhhhhhHHHHHHHHHHHHHHHhcc------ceeeehhc
Confidence            3444445555544  55555544 6999999999988887543 2333338899999999887754      55555566


Q ss_pred             CCcc--ccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHHHhhhhHHHhcceeEeec
Q psy5457         104 QTSI--YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKVGAVLT  165 (167)
Q Consensus       104 g~~~--~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k~fl~~k~~~ki~~~~~  165 (167)
                      |+.+  +-..+.+.+...-+..+|--.++.+|+|++-|+..++|+.+|||+|.|..+||+-+++
T Consensus       139 gl~s~nkp~l~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n~  202 (467)
T KOG4406|consen  139 GLPSDNKPYLQLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFNS  202 (467)
T ss_pred             CCcccccchHHHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEeeh
Confidence            6653  2233555555555666788899999999999999999999999999999999987764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	167
3hy5_A	316	Crystal Structure Of Cralbp Length = 316		1e-21
3hx3_A	316	Crystal Structure Of Cralbp Mutant R234w Length = 3		3e-19
1oip_A	278	The Molecular Basis Of Vitamin E Retention: Structu		5e-14
1r5l_A	262	Crystal Structure Of Human Alpha-tocopherol Transfe		1e-13

>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp Length = 316

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 6   SVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWS 65
           + +LL  Y++FR  +PE+F  LS +   V+  +   +PGVL  RD+ GR V+  ++ NW 
Sbjct: 109 AYELLRGYVNFRLQYPELFDSLSPE--AVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQ 166
Query: 66  SHLFSLEAIFKXXXXXXXXXXVDTKIQYSGFVFLLDWNQTSIYASPTL----LRTMISGL 121
           S   + + I +           + + Q +GF  + ++   ++  + +L    LR M+  L
Sbjct: 167 SQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDML 226
Query: 122 QDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
           QD +PARFKAIHFI++P        +VKPFLK K  ++V
Sbjct: 227 QDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERV 265

>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w Length = 316

Iteration: 1
 Score = 90.9 bits (224), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 6   SVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWS 65
           + +LL  Y++FR  +PE+F  LS +   V+  +   +PGVL  RD+ GR V   ++ NW 
Sbjct: 109 AYELLRGYVNFRLQYPELFDSLSPE--AVRCTIEAGYPGVLSSRDKYGRVVXLFNIENWQ 166
Query: 66  SHLFSLEAIFKXXXXXXXXXXVDTKIQYSGFVFLLDWNQTSIYASPTL----LRTMISGL 121
           S   + + I +           + + Q +GF  + ++   +   + +L    LR  +  L
Sbjct: 167 SQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTXQQAASLRTSDLRKXVDXL 226
Query: 122 QDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
           QD +PA FKAIHFI++P        +VKPFLK K  ++V
Sbjct: 227 QDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERV 265

>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of Human Alpha-tocopherol Transfer Protein Length = 278

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 6/156 (3%)
Query: 9   LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
           LL+NY  +R   PEI   L  +   +   L+  + GVL  RD  G  VL   + +W   +
Sbjct: 69  LLKNYYKWRAECPEISADLHPRS--IIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKV 126
Query: 69  FSLEAIFKXXXXXXXXXXVDTKIQYSGFVFLLD---WNQTSIYA-SPTLLRTMISGLQDC 124
           F+   +F+           + + Q +G   + D   W  +  +  +P++ + + + L D 
Sbjct: 127 FTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDS 186
Query: 125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
           +P + + IH INEPV    + +++KPFL EK ++++
Sbjct: 187 FPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERI 222

>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer Protein Bound To Its Ligand Length = 262

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 9   LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
           LL+NY  +R   PEI   L  +   +   L+  + GVL  RD  G  VL   + +W   +
Sbjct: 53  LLKNYYKWRAECPEISADLHPRS--IIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKV 110
Query: 69  FSLEAIFKXXXXXXXXXXVDTKIQYSGFVFLLD---WNQTSIYA-SPTLLRTMISGLQDC 124
           F+   +F+           + + Q +G   + D   W  +  +  +P++ + + + L D 
Sbjct: 111 FTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDS 170
Query: 125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
           +P + + IH INEPV    + + +KPFL EK ++++
Sbjct: 171 FPLKVRGIHLINEPVIFHAVFSXIKPFLTEKIKERI 206

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	167
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	3e-43
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	4e-43
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	3e-20
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	1e-14
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	7e-13

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316

 Score =  144 bits (365), Expect = 3e-43
 Identities = 53/163 (32%), Positives = 89/163 (54%), Gaps = 6/163 (3%)

Query: 2   NPETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSL 61
           N   + +LL  Y++FR  +PE+F  L      V+  +   +PGVL  RD+ GR V+  ++
Sbjct: 105 NVGRAYELLRGYVNFRLQYPELFDSL--SPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNI 162

Query: 62  RNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTM 117
            NW S   + + I ++   +++ LL + + Q +GF  + ++   ++        + LR M
Sbjct: 163 ENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKM 222

Query: 118 ISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
           +  LQD +PA FKAIHFI++P        +VKPFLK K  ++V
Sbjct: 223 VDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERV 265

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262

 Score =  142 bits (361), Expect = 4e-43
 Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 6/163 (3%)

Query: 2   NPETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSL 61
           + + +  LL+NY  +R   PEI   L      +   L+  + GVL  RD  G  VL   +
Sbjct: 46  DLDLAWRLLKNYYKWRAECPEISADL--HPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRI 103

Query: 62  RNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTM 117
            +W   +F+   +F+  L+  + ++ + + Q +G   + D            +P++ + +
Sbjct: 104 AHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKI 163

Query: 118 ISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
            + L D +P + + IH INEPV    + +++KPFL EK ++++
Sbjct: 164 AAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERI 206

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403

 Score = 85.4 bits (211), Expect = 3e-20
 Identities = 28/176 (15%), Positives = 58/176 (32%), Gaps = 23/176 (13%)

Query: 2   NPETSVDLLENYIHFRKTH--PEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFL 59
           + + S  +L  ++ FRK      I      +       ++    G +   D +G  V + 
Sbjct: 48  DLQKSEAMLRKHVEFRKQKDIDNIISWQPPEV------IQQYLSGGMCGYDLDGCPVWYD 101

Query: 60  SLRNWSS----HLFSLEAIFKSLLLLMDSLL-------VDTKIQYSGFVFLLDWNQTSI- 107
            +    +       S + + ++ +   + LL            +      + D     + 
Sbjct: 102 IIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLK 161

Query: 108 ---YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
                +       +   ++ YP   K +  +  P    V   L+KPFL E TR K+
Sbjct: 162 HLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKI 217

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320

 Score = 69.1 bits (169), Expect = 1e-14
 Identities = 29/180 (16%), Positives = 64/180 (35%), Gaps = 20/180 (11%)

Query: 1   MNPETSVDLLENYIHFRKTHP-----EIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRC 55
            +   SV++      +R+ +      E +      +   +I L   +P      D++GR 
Sbjct: 73  FDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRP 132

Query: 56  VLFLSLRNW----SSHLFSLEAIFKSLLLLMDSLLV--------DTKIQYSGFVFLLD-- 101
           + F  L          + + + + ++L+   +                       +LD  
Sbjct: 133 LYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLK 192

Query: 102 -WNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
             + ++ Y   + ++ +    Q+ YP R    + I+ P     +  +VKPFL   T  K+
Sbjct: 193 GISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKI 252

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296

 Score = 64.0 bits (156), Expect = 7e-13
 Identities = 36/176 (20%), Positives = 67/176 (38%), Gaps = 20/176 (11%)

Query: 2   NPETSVDLLENYIHFRKTHP--EIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFL 59
           + + + ++ EN   +RK +    I       +  +   +   +P      D++GR V F 
Sbjct: 65  DVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPL---IAKFYPQYYHKTDKDGRPVYFE 121

Query: 60  SLRNWSSH----LFSLEAIFKSLLLLMDSLL--------VDTKIQYSGFVFLLD---WNQ 104
            L   + H    + S E + K+L+   +S++                    ++D    + 
Sbjct: 122 ELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISI 181

Query: 105 TSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
           +S Y+  + +R      Q+ YP R    + IN P        L KPFL   T  K+
Sbjct: 182 SSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKI 237

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	100.0
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	100.0
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	100.0
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	100.0
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	100.0
3pg7_A	256	Neurofibromin; SEC lipid binding domain, PH domain	99.37
3peg_A	290	Neurofibromin; SEC14 domain, pleckstrin homology d	99.27
2q3l_A	126	Uncharacterized protein; SPOIIAA-like fold, struct	85.92

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*

Probab=100.00  E-value=2e-42  Score=265.46  Aligned_cols=164  Identities=33%  Similarity=0.609  Sum_probs=153.9

Q ss_pred             CChHHHHHHHHHHHHHHhhCCCccCCCCCCCHHHHHHHhhcCCccCCCCCCCCCEEEEEecCCcCCCCCCHHHHHHHHHH
Q psy5457           1 MNPETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLL   80 (167)
Q Consensus         1 f~v~~A~~~l~~~~~~R~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~g~d~~Gr~V~~~r~~~~~~~~~~~~~~~~~~~~   80 (167)
                      ||+++|+++|++|++||+++|+++.+.+  ++++.+.++.|++++++|+|++||||+++++|++|+++.+.++++|+.++
T Consensus       104 fdv~kA~~~L~~~l~wR~~~~~~~~~~~--~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~  181 (316)
T 3hx3_A          104 FNVGRAYELLRGYVNFRLQYPELFDSLS--PEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCF  181 (316)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCGGGTTTCC--HHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCchhhcCCC--HHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHH
Confidence            8999999999999999999999887654  45678889999998999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCcceecEEEEEecCCCcc----ccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHHHhhhhHHH
Q psy5457          81 LMDSLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKT  156 (167)
Q Consensus        81 ~~e~~~~~~~~~~~g~v~I~D~~g~~~----~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k~fl~~k~  156 (167)
                      ++|.++.+++.+++|+++|+|++|+|+    +++++.+|.+++++|++||+|++++||||+|++|+.+|+++||||+++|
T Consensus       182 ~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt  261 (316)
T 3hx3_A          182 ILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKL  261 (316)
T ss_dssp             HHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHH
T ss_pred             HHHHHHhcccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHh
Confidence            999999877788999999999999994    4788999999999999999999999999999999999999999999999


Q ss_pred             hcceeEeecC
Q psy5457         157 RDKVGAVLTM  166 (167)
Q Consensus       157 ~~ki~~~~~~  166 (167)
                      ++||+++++.
T Consensus       262 ~~KI~~~~~~  271 (316)
T 3hx3_A          262 LERVFVHGDD  271 (316)
T ss_dssp             HTTEEEEETC
T ss_pred             hhheEEeCCC
Confidence            9999999753

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*

Probab=100.00  E-value=5.1e-42  Score=256.93  Aligned_cols=163  Identities=26%  Similarity=0.512  Sum_probs=151.3

Q ss_pred             CChHHHHHHHHHHHHHHhhCCCccCCCCCCCHHHHHHHhhcCCccCCCCCCCCCEEEEEecCCcCCCCCCHHHHHHHHHH
Q psy5457           1 MNPETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLL   80 (167)
Q Consensus         1 f~v~~A~~~l~~~~~~R~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~g~d~~Gr~V~~~r~~~~~~~~~~~~~~~~~~~~   80 (167)
                      ||+++|+++|++|++||+++|+++.+.++  +++.+.++.|++.+++|+|++||||+++++|++|++.++..+++|+.++
T Consensus        45 ~dv~~A~~~l~~~l~wR~~~~~i~~~~~~--~~~~~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~  122 (262)
T 1r5l_A           45 FDLDLAWRLLKNYYKWRAECPEISADLHP--RSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLI  122 (262)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCHHHHSCCCG--GGTHHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhChHhhhcCCh--HHHHHHHHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHH
Confidence            79999999999999999999988776654  3467788999888899999999999999999999999999999999999


Q ss_pred             HHHHHhhccCcceecEEEEEecCCCcc----ccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHHHhhhhHHH
Q psy5457          81 LMDSLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKT  156 (167)
Q Consensus        81 ~~e~~~~~~~~~~~g~v~I~D~~g~~~----~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k~fl~~k~  156 (167)
                      ++|.++.+++++++|+++|+|++|+|+    +++++.+|.+++++|++||+|++++||||+|++|+.+|+++||||+++|
T Consensus       123 ~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t  202 (262)
T 1r5l_A          123 TSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKI  202 (262)
T ss_dssp             HHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHH
T ss_pred             HHHHHHhChhhcccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHH
Confidence            999999887778899999999999994    3578999999999999999999999999999999999999999999999


Q ss_pred             hcceeEeec
Q psy5457         157 RDKVGAVLT  165 (167)
Q Consensus       157 ~~ki~~~~~  165 (167)
                      ++||+++++
T Consensus       203 ~~Ki~~~~~  211 (262)
T 1r5l_A          203 KERIHMHGN  211 (262)
T ss_dssp             HTTEEECCS
T ss_pred             HhheEEeCC
Confidence            999999975

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1

Probab=100.00  E-value=6.8e-38  Score=238.47  Aligned_cols=162  Identities=23%  Similarity=0.298  Sum_probs=140.0

Q ss_pred             CChHHHHHHHHHHHHHHhhC--CCccCCCCCCCHHHHHHHhhcCCccCCCCCCCCCEEEEEecCCcCCCC----CCHHHH
Q psy5457           1 MNPETSVDLLENYIHFRKTH--PEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL----FSLEAI   74 (167)
Q Consensus         1 f~v~~A~~~l~~~~~~R~~~--~~~~~~~~~~~~~~~~~l~~~~~~~l~g~d~~Gr~V~~~r~~~~~~~~----~~~~~~   74 (167)
                      ||+++|+++|+++++||+++  ++++.+.++.+   .+.++..+..+++|+|++||||+++++|++|+++    .+.+++
T Consensus        64 fdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~  140 (296)
T 1aua_A           64 FDVQLAKEMFENCEKWRKDYGTDTILQDFHYDE---KPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERM  140 (296)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTT---HHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCcchhhhccccCc---HHHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHH
Confidence            79999999999999999998  67776655433   2445566666678999999999999999998764    589999


Q ss_pred             HHHHHHHHHHHhhc--------cCcceecEEEEEecCCCcc-ccC--HHHHHHHHHHhhhcccceeeeEEEEeCchHHHH
Q psy5457          75 FKSLLLLMDSLLVD--------TKIQYSGFVFLLDWNQTSI-YAS--PTLLRTMISGLQDCYPARFKAIHFINEPVQVDV  143 (167)
Q Consensus        75 ~~~~~~~~e~~~~~--------~~~~~~g~v~I~D~~g~~~-~~~--~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~  143 (167)
                      +++.++.+|.+++.        .+.+++|+++|+|++|+++ +++  ++.+|.++.++|++||+|++++||||+|++|++
T Consensus       141 ~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~  220 (296)
T 1aua_A          141 LKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFST  220 (296)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHH
Confidence            99999999987653        2345889999999999994 444  678999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHhcceeEeec
Q psy5457         144 LLALVKPFLKEKTRDKVGAVLT  165 (167)
Q Consensus       144 ~~~~~k~fl~~k~~~ki~~~~~  165 (167)
                      +|+++||||+++|++||+|+++
T Consensus       221 ~~~iikpfl~~~t~~KI~~~~~  242 (296)
T 1aua_A          221 AFRLFKPFLDPVTVSKIFILGS  242 (296)
T ss_dssp             HHHHHGGGSCHHHHTTEEECCS
T ss_pred             HHHHHHhhcCHhhcceEEEeCc
Confidence            9999999999999999999975

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=100.00  E-value=8.2e-36  Score=235.64  Aligned_cols=159  Identities=19%  Similarity=0.285  Sum_probs=136.2

Q ss_pred             CChHHHHHHHHHHHHHHhhCC--CccCCCCCCCHHHHHHHhhcCCccCCCCCCCCCEEEEEecCCcCCC----CCCHHHH
Q psy5457           1 MNPETSVDLLENYIHFRKTHP--EIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSH----LFSLEAI   74 (167)
Q Consensus         1 f~v~~A~~~l~~~~~~R~~~~--~~~~~~~~~~~~~~~~l~~~~~~~l~g~d~~Gr~V~~~r~~~~~~~----~~~~~~~   74 (167)
                      ||+++|+++|+++++||++++  +++.  ...++.+++.+.    ..++|+|++||||+++++|++|++    ..+.+++
T Consensus        47 fdv~~A~~~l~~~l~wR~~~~~~~i~~--~~~~~~~~~~~~----~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~  120 (403)
T 1olm_A           47 FDLQKSEAMLRKHVEFRKQKDIDNIIS--WQPPEVIQQYLS----GGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDL  120 (403)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTGGGGGG--SCCCHHHHHHCC----BEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCcccc--cCCHHHHHHhCC----ceeeccCCCcCEEEEEecCCCChHHhhccCCHHHH
Confidence            799999999999999999984  5554  222333444433    335799999999999999999987    5799999


Q ss_pred             HHHHHHHHHHHhhccCc-------ceecEEEEEecCCCcc-cc---CHHHHHHHHHHhhhcccceeeeEEEEeCchHHHH
Q psy5457          75 FKSLLLLMDSLLVDTKI-------QYSGFVFLLDWNQTSI-YA---SPTLLRTMISGLQDCYPARFKAIHFINEPVQVDV  143 (167)
Q Consensus        75 ~~~~~~~~e~~~~~~~~-------~~~g~v~I~D~~g~~~-~~---~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~  143 (167)
                      +|+.++++|.++++...       +++|+++|+|++|+++ ++   .++.+|.+++++|++||+|++++||||+|++|++
T Consensus       121 ~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~  200 (403)
T 1olm_A          121 LRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPV  200 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHH
Confidence            99999999999876533       4799999999999994 44   4577899999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHhcceeEeec
Q psy5457         144 LLALVKPFLKEKTRDKVGAVLT  165 (167)
Q Consensus       144 ~~~~~k~fl~~k~~~ki~~~~~  165 (167)
                      +|+++||||+++|++||+|+++
T Consensus       201 i~~~ikpfl~~~t~~KI~~~~~  222 (403)
T 1olm_A          201 AYNLIKPFLSEDTRKKIMVLGA  222 (403)
T ss_dssp             HHHHHGGGSCHHHHHTEEECCT
T ss_pred             HHHHHHhhcCHhhhceEEEECh
Confidence            9999999999999999999964

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*

Probab=100.00  E-value=2.1e-36  Score=232.25  Aligned_cols=165  Identities=18%  Similarity=0.262  Sum_probs=136.3

Q ss_pred             CChHHHHHHHHHHHHHHhhCC--CccCCCCCCCH---HHHHHHhhcCCccCCCCCCCCCEEEEEecCCcCCCC----CCH
Q psy5457           1 MNPETSVDLLENYIHFRKTHP--EIFGQLSLKDP---YVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL----FSL   71 (167)
Q Consensus         1 f~v~~A~~~l~~~~~~R~~~~--~~~~~~~~~~~---~~~~~l~~~~~~~l~g~d~~Gr~V~~~r~~~~~~~~----~~~   71 (167)
                      ||+++|+++|+++++||++++  +++.+.++..+   .....+.+.+..+++|+|++||||+++++|++|+++    .+.
T Consensus        73 fdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~  152 (320)
T 3q8g_A           73 FDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTE  152 (320)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCccccccccccccccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCH
Confidence            899999999999999999987  55543322210   012344555566788999999999999999999875    488


Q ss_pred             HHHHHHHHHHHHHHhhc--------cCcceecEEEEEecCCCcc-ccC--HHHHHHHHHHhhhcccceeeeEEEEeCchH
Q psy5457          72 EAIFKSLLLLMDSLLVD--------TKIQYSGFVFLLDWNQTSI-YAS--PTLLRTMISGLQDCYPARFKAIHFINEPVQ  140 (167)
Q Consensus        72 ~~~~~~~~~~~e~~~~~--------~~~~~~g~v~I~D~~g~~~-~~~--~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~  140 (167)
                      ++++++.++.+|.+++.        .+..++++++|+|++|+++ ++.  ++.+|.++.++|++||+|++++||||+|++
T Consensus       153 ~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~  232 (320)
T 3q8g_A          153 KQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFG  232 (320)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTT
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHH
Confidence            99999999999987642        1123577899999999994 443  578999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHHhcceeEeec
Q psy5457         141 VDVLLALVKPFLKEKTRDKVGAVLT  165 (167)
Q Consensus       141 ~~~~~~~~k~fl~~k~~~ki~~~~~  165 (167)
                      |+.+|+++||||+++|++||+|+++
T Consensus       233 f~~~~~~ikpfl~~~t~~KI~~~~~  257 (320)
T 3q8g_A          233 FSTMFKMVKPFLDPVTVSKIFILGS  257 (320)
T ss_dssp             HHHHHTTTGGGSCHHHHHTEEECCT
T ss_pred             HHHHHHHHHHhCCHHHhhhEEEeCC
Confidence            9999999999999999999999975

>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*

Probab=99.37  E-value=8.7e-13  Score=97.92  Aligned_cols=123  Identities=9%  Similarity=0.058  Sum_probs=99.3

Q ss_pred             HHhhcCCccCCCCCCCCCEEEEEecCCcCCCCCCHHHHHHHHHHHHHHHhhccCcceecEEEEEecCCCcc--ccCHHHH
Q psy5457          37 CLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSI--YASPTLL  114 (167)
Q Consensus        37 ~l~~~~~~~l~g~d~~Gr~V~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D~~g~~~--~~~~~~~  114 (167)
                      +-+.+++ +-.|.|++||||+++..+++++...+.+.++.+.+..++....      ....+|+|++|++.  ..+.+.+
T Consensus         7 i~~~~if-y~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~~~------~~y~lV~d~T~~~~~n~p~~~wl   79 (256)
T 3pg7_A            7 LKTLSIF-YQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYA------KPYEIVVDLTHTGPSNRFKTDFL   79 (256)
T ss_dssp             HHHHTSE-EEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTTT------SCEEEEEECTTCCGGGCCCHHHH
T ss_pred             HHHcCCE-EEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHhcC------CCeEEEEECCCCCcccCCcHHHH
Confidence            3344553 3448999999999999999998888877777777766664332      45899999999984  4566889


Q ss_pred             HHHHHHhhhcccceeeeEEEEeCchHHHHHHHH-HHhhhhHHHhcceeEeecC
Q psy5457         115 RTMISGLQDCYPARFKAIHFINEPVQVDVLLAL-VKPFLKEKTRDKVGAVLTM  166 (167)
Q Consensus       115 k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~-~k~fl~~k~~~ki~~~~~~  166 (167)
                      +.+.+++...|...++++|++|+++++...+.. .++|.+.+..+|+++++++
T Consensus        80 ~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~sl  132 (256)
T 3pg7_A           80 SKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP  132 (256)
T ss_dssp             HHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESST
T ss_pred             HHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECCH
Confidence            999999999999999999999999999976665 5677777888999999874

>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2

Probab=85.92  E-value=4.6  Score=25.88  Aligned_cols=84  Identities=15%  Similarity=0.062  Sum_probs=53.0

Q ss_pred             CCCHHHHHHHHHHHHHHHhhccCcceecEEEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHH
Q psy5457          68 LFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLAL  147 (167)
Q Consensus        68 ~~~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~  147 (167)
                      +.+.+|+-. ..-.+|..+.+.+  ...+.+++|++++. -+++..+..=++.-..+ -..+.++-||-.+.+...+-++
T Consensus        29 ~lt~~d~~~-l~~~l~~~l~~~~--~~~i~ll~~~~~f~-G~~~~a~~~d~k~~~~h-~~~~~RiAvV~d~~W~~~~~~~  103 (126)
T 2q3l_A           29 KLTHEDYEQ-MTPLLESALAGIK--TPEIVALIDITELD-GLSLHAAWDDLKLGLKH-GKEFKRVAIIGQGELQEWATRV  103 (126)
T ss_dssp             EECHHHHHH-HHHHHHHHTTTCC--SSCEEEEEEEEEEE-EECHHHHHHHHHHHHHH-GGGEEEEEEECCSHHHHHHHHH
T ss_pred             eECHHHHHH-HHHHHHHHHHhCC--CceEEEEEEecCCC-CCCHHHHHHHHHhhhhH-HhcCCEEEEEcChHHHHHHHHH
Confidence            346677776 6677777666432  11255666655443 13343333223322233 3679999999999999999999


Q ss_pred             HHhhhhHHH
Q psy5457         148 VKPFLKEKT  156 (167)
Q Consensus       148 ~k~fl~~k~  156 (167)
                      +++|++.++
T Consensus       104 ~~~~~~~ev  112 (126)
T 2q3l_A          104 ANWFTPGEF  112 (126)
T ss_dssp             HHHHCSSEE
T ss_pred             HhhccCCce
Confidence            999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	167
d1r5la2	185	c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot	8e-27
d1olma3	199	c.13.1.1 (A:76-274) Supernatant protein factor (SP	4e-14
d1auaa2	203	c.13.1.1 (A:97-299) C-terminal domain of phosphati	1e-12

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.8 bits (243), Expect = 8e-27
 Identities = 33/127 (25%), Positives = 66/127 (51%), Gaps = 4/127 (3%)

Query: 38  LRNRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFV 97
           L+  + GVL  RD  G  VL   + +W   +F+   +F+  L+  + ++ + + Q +G  
Sbjct: 6   LKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIK 65

Query: 98  FLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLK 153
            + D            +P++ + + + L D +P + + IH INEPV    + +++KPFL 
Sbjct: 66  AIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLT 125

Query: 154 EKTRDKV 160
           EK ++++
Sbjct: 126 EKIKERI 132

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (158), Expect = 4e-14
 Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 15/138 (10%)

Query: 38  LRNRFPGVLPDRDRNGRCVLFLSLRNWS----SHLFSLEAIFKSLLLLMDSLLVDTKIQY 93
           ++    G +   D +G  V +  +            S + + ++ +   + LL +   Q 
Sbjct: 5   IQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQT 64

Query: 94  S-------GFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVD 142
           +           + D     +      +       +   ++ YP   K +  +  P    
Sbjct: 65  TKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFP 124

Query: 143 VLLALVKPFLKEKTRDKV 160
           V   L+KPFL E TR K+
Sbjct: 125 VAYNLIKPFLSEDTRKKI 142

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.9 bits (147), Expect = 1e-12
 Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 15/134 (11%)

Query: 42  FPGVLPDRDRNGRCVLFLSLRNW----SSHLFSLEAIFKSLLLLMDSLL--------VDT 89
           +P      D++GR V F  L        + + S E + K+L+   +S++           
Sbjct: 11  YPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAA 70

Query: 90  KIQYSGFVFLLD---WNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLA 146
                    ++D    + +S Y+  + +R      Q+ YP R    + IN P        
Sbjct: 71  GHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFR 130

Query: 147 LVKPFLKEKTRDKV 160
           L KPFL   T  K+
Sbjct: 131 LFKPFLDPVTVSKI 144

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	167
d1r5la2	185	Alpha-tocopherol transfer protein {Human (Homo sap	100.0
d1olma3	199	Supernatant protein factor (SPF), middle domain {H	99.97
d1auaa2	203	C-terminal domain of phosphatidylinositol transfer	99.96
d1r5la1	66	Alpha-tocopherol transfer protein {Human (Homo sap	98.32
d1olma1	75	Supernatant protein factor (SPF), N-terminal domai	97.2
d2q3la1	125	Uncharacterized protein Shew3102 {Shewanella loihi	89.39

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-36  Score=215.84  Aligned_cols=133  Identities=25%  Similarity=0.520  Sum_probs=126.6

Q ss_pred             HHHHHhhcCCccCCCCCCCCCEEEEEecCCcCCCCCCHHHHHHHHHHHHHHHhhccCcceecEEEEEecCCCcc----cc
Q psy5457          34 VQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSI----YA  109 (167)
Q Consensus        34 ~~~~l~~~~~~~l~g~d~~Gr~V~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D~~g~~~----~~  109 (167)
                      +.++++.|+++.+||+|++||||+++|++++||+.++.++++|+.++++|.++.+++.|++|+++|+|++|+++    ++
T Consensus         2 i~~~l~~g~~~~lp~rD~~Gr~v~~~r~~~~d~~~~~~~~~~r~~~~~~e~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~   81 (185)
T d1r5la2           2 IIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQI   81 (185)
T ss_dssp             THHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHC
T ss_pred             hHHHHHcCCceecCCCCcCcCEEEEEEcccCCCCCCCHHHHHHHHHHHHHHHHhccccCCceEEEEEECCCCCHHHhhhc
Confidence            45789999999999999999999999999999999999999999999999999988889999999999999983    47


Q ss_pred             CHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHHHhhhhHHHhcceeEeecC
Q psy5457         110 SPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKVGAVLTM  166 (167)
Q Consensus       110 ~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k~fl~~k~~~ki~~~~~~  166 (167)
                      +++.++++++++|++||+|++++|+||+|++|+.+|+++||||+++|++||+++++.
T Consensus        82 ~~~~~~~~~~~~q~~yP~rl~~i~ivn~P~~~~~~~~~vk~fl~~k~~~Ki~~~~~~  138 (185)
T d1r5la2          82 TPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNN  138 (185)
T ss_dssp             CHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSS
T ss_pred             cHHHHHHHHHHHHhhCchhhheeEEEcCCHHHHHHHHHHHHhccHHHHhheEEeccc
Confidence            899999999999999999999999999999999999999999999999999999764

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.7e-32  Score=193.77  Aligned_cols=130  Identities=17%  Similarity=0.268  Sum_probs=115.9

Q ss_pred             HHHhhcCCccCCCCCCCCCEEEEEecCCcCCC----CCCHHHHHHHHHHHHHHHhhcc-------CcceecEEEEEecCC
Q psy5457          36 ICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSH----LFSLEAIFKSLLLLMDSLLVDT-------KIQYSGFVFLLDWNQ  104 (167)
Q Consensus        36 ~~l~~~~~~~l~g~d~~Gr~V~~~r~~~~~~~----~~~~~~~~~~~~~~~e~~~~~~-------~~~~~g~v~I~D~~g  104 (167)
                      +++++++.+.++|+|++||||+++|+|++|++    ..+.++++++.++.+|.+++..       ..+++|+++|+|++|
T Consensus         3 ~~i~~~~p~~~~G~Dk~Grpv~~~r~g~~d~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~v~~~~~I~Dl~g   82 (199)
T d1olma3           3 EVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEG   82 (199)
T ss_dssp             HHHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTT
T ss_pred             HHHHHHCCCccccCCCCCCEEEEEecccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceEEEEEECCC
Confidence            46777887778899999999999999999976    4689999999999999987632       245789999999999


Q ss_pred             Ccc-cc---CHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHHHhhhhHHHhcceeEeec
Q psy5457         105 TSI-YA---SPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKVGAVLT  165 (167)
Q Consensus       105 ~~~-~~---~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k~fl~~k~~~ki~~~~~  165 (167)
                      +++ ++   .++.++++++++|++||+|++++||||+|++|+++|+++||||+++|++||+++++
T Consensus        83 ~s~~~~~~~~~~~l~~~~~~~q~~YPerl~~i~iiN~P~~f~~~w~ivk~fl~~~t~~KI~~~~~  147 (199)
T d1olma3          83 LGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGA  147 (199)
T ss_dssp             CCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCT
T ss_pred             CchhhhccccHHHHHHHHHHHHHHHHHhhhheEEECCCHHHHHHHHHHHHhcCHHhhccEEEeCC
Confidence            984 44   45789999999999999999999999999999999999999999999999999975

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.9e-30  Score=184.83  Aligned_cols=131  Identities=24%  Similarity=0.295  Sum_probs=114.9

Q ss_pred             HHHHhhcCCccCCCCCCCCCEEEEEecCCcCCC----CCCHHHHHHHHHHHHHHHhhc--------cCcceecEEEEEec
Q psy5457          35 QICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSH----LFSLEAIFKSLLLLMDSLLVD--------TKIQYSGFVFLLDW  102 (167)
Q Consensus        35 ~~~l~~~~~~~l~g~d~~Gr~V~~~r~~~~~~~----~~~~~~~~~~~~~~~e~~~~~--------~~~~~~g~v~I~D~  102 (167)
                      +.++.+.++.+++|+|++||||+++|+|++|++    ..+.++++++.++.+|.+++.        ...+++++++|+|+
T Consensus         4 ~~~~~~~~p~~~~G~Dk~GrpV~~~r~g~~~~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~v~~~i~IiD~   83 (203)
T d1auaa2           4 KPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDL   83 (203)
T ss_dssp             HHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEEC
T ss_pred             cHHHHHHCCCcCCCCCCCCCEEEEEECCCCChHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCccceEEEEEEC
Confidence            345677888888999999999999999999875    458999999999999988752        23457899999999


Q ss_pred             CCCcc-ccC--HHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHHHhhhhHHHhcceeEeec
Q psy5457         103 NQTSI-YAS--PTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKVGAVLT  165 (167)
Q Consensus       103 ~g~~~-~~~--~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k~fl~~k~~~ki~~~~~  165 (167)
                      +|+++ ++.  ...++.+++++|++||++++++||+|+|++|+++|+++|+||+++|++||+++++
T Consensus        84 ~g~s~~~~~~~~~~~k~~~~~~q~~yPe~l~~i~ivN~P~~~~~~~~~vk~fl~~~t~~KI~~~~~  149 (203)
T d1auaa2          84 KGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGS  149 (203)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCS
T ss_pred             CCCChHHhhhHHHHHHHHHHHHHHhChHhhcceEEECCcHHHHHHHHHHHhhcCHHHhhceeecCC
Confidence            99994 443  3568999999999999999999999999999999999999999999999999975

>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=8.9e-08  Score=54.70  Aligned_cols=29  Identities=31%  Similarity=0.502  Sum_probs=27.3

Q ss_pred             CChHHHHHHHHHHHHHHhhCCCccCCCCC
Q psy5457           1 MNPETSVDLLENYIHFRKTHPEIFGQLSL   29 (167)
Q Consensus         1 f~v~~A~~~l~~~~~~R~~~~~~~~~~~~   29 (167)
                      ||+++|+++|++|++||+++|++|.+.+|
T Consensus        37 f~~~ka~~~l~~y~~~R~~~peif~~l~P   65 (66)
T d1r5la1          37 FDLDLAWRLLKNYYKWRAECPEISADLHP   65 (66)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCHHHHSCCCG
T ss_pred             CCHHHHHHHHHHHHHHHHHCHHHccCCCC
Confidence            79999999999999999999999998765

>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Supernatant protein factor (SPF), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00012  Score=42.34  Aligned_cols=21  Identities=24%  Similarity=0.436  Sum_probs=20.1

Q ss_pred             CChHHHHHHHHHHHHHHhhCC
Q psy5457           1 MNPETSVDLLENYIHFRKTHP   21 (167)
Q Consensus         1 f~v~~A~~~l~~~~~~R~~~~   21 (167)
                      ||+++|.+|+.+|++||++++
T Consensus        47 fdv~kA~~ml~~~l~WR~~~~   67 (75)
T d1olma1          47 FDLQKSEAMLRKHVEFRKQKD   67 (75)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHcC
Confidence            899999999999999999986

>d2q3la1 c.13.2.2 (A:1-125) Uncharacterized protein Shew3102 {Shewanella loihica [TaxId: 359303]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Sfri0576-like
domain: Uncharacterized protein Shew3102
species: Shewanella loihica [TaxId: 359303]

Probab=89.39  E-value=1  Score=27.56  Aligned_cols=84  Identities=15%  Similarity=0.056  Sum_probs=51.7

Q ss_pred             CCCHHHHHHHHHHHHHHHhhccCcceecEEEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHH
Q psy5457          68 LFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLAL  147 (167)
Q Consensus        68 ~~~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~  147 (167)
                      +.+.+|+-+ ..-.+|..+.+.+.  ..+.+++|++++.. +++..+-.=++..-.+. .++.++-||-.+.+...+-++
T Consensus        28 ~lt~~D~~~-~~~~l~~~l~~~~~--~~v~~li~~~~F~G-~~~~A~~ed~k~~~~h~-~~f~RiAiV~d~~W~~~~~~~  102 (125)
T d2q3la1          28 KLTHEDYEQ-MTPLLESALAGIKT--PEIVALIDITELDG-LSLHAAWDDLKLGLKHG-KEFKRVAIIGQGELQEWATRV  102 (125)
T ss_dssp             EECHHHHHH-HHHHHHHHTTTCCS--SCEEEEEEEEEEEE-ECHHHHHHHHHHHHHHG-GGEEEEEEECCSHHHHHHHHH
T ss_pred             eECHHHHHH-HHHHHHHHHHhcCC--ceEEEEEEcCCCCC-CCHHHHHHHHHhHHhhh-ccccEEEEEcChHHHHHHHHH
Confidence            346778865 45677777765322  23555555554431 12322221222222333 679999999999999999999


Q ss_pred             HHhhhhHHH
Q psy5457         148 VKPFLKEKT  156 (167)
Q Consensus       148 ~k~fl~~k~  156 (167)
                      .++|++-++
T Consensus       103 ~~~f~~~ev  111 (125)
T d2q3la1         103 ANWFTPGEF  111 (125)
T ss_dssp             HHHHCSSEE
T ss_pred             HhhccCCce
Confidence            999988543