Psyllid ID: psy5464

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-
MQVDHFGPIAVKWDPKNLEIRTMSVEKTLEPLVLQVTTLVNTKGPSKKKKGRSKRAHVLVAAVEKATENFIERGDAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRLLILADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDNIKAFGRNATELMAQAAKHGAEGSSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKHSTMLLTASKVYVRHPELAAAKENRNFVLGTTGFFTLAVTSLKKRSVSLLHQVYERMVMDPLAYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSDFMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEE
cccccccccccccccccccEEEEEHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcc
ccccccccEEEcccccccEEEcHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccEEEcHHHHcHHccHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHc
mqvdhfgpiavkwdpknleirTMSVEKTLEPLVLQVTTLvntkgpskkkkgrskRAHVLVAAVEKATENFIERGDAMSLAARefaddpcsslkrgNMVRAARNLLSAVTRLLILADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDNIKAFGRNATELMAQAAKhgaegssatqGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKHSTMLLTASKvyvrhpelaaakenrnfvlgtTGFFTLAVTSLKKRSVSLLHQVYERMVmdplaynervrPSLEERLESIISGAAlmadsnctrddRRERIVAECNAVRQALQDLLSEYMANmsikdpsegLERAIDHMCRKTRDLRRQLRKAVVDHermvmdplaynervrPSLEERLESIISGAAlmadsnctrddRRERIVAECNAVRQALQDLLSDFMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEE
mqvdhfgpiavkwdpknlEIRTMSVektleplvlqvttlvntkgpskkkkgrskrahVLVAAVEKATENFIERGDAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRLLILADMVDVHLLLKSLRVVEDDLEKvknassqgellDNIKAFGRNATELMAQAAKHgaegssatqGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKHSTMLLTASKVYVRHPELAaakenrnfvlGTTGFFTLAVTSLKKRSVSLLHQVYERMVMDPLAYNERVRPSLEERLESIIsgaalmadsnctrDDRRERIVAECNAVRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLRKavvdhermvmdplaynervrpSLEERLESIIsgaalmadsnctrDDRRERIVAECNAVRQALQDLLSDFMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEE
MQVDHFGPIAVKWDPKNLEIRTMSVEKTLEPLVLQVTTLVNTkgpskkkkgrskrAHVLVAAVEKATENFIERGDAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRLLILADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDNIKAFGRNATELMAQAAKHGAEGSSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQlrddlaaaraILKKHSTMLLTASKVYVRHPELAAAKENRNFVLGTTGFFTLAVTSLKKRSVSLLHQVYERMVMDPLAYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSDFMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEE
*****FGPIAVKWDPKNLEIRTMSVEKTLEPLVLQVTTLV*****************VLVAAVEKATENFIERG****LA***F*******LKRGNMVRAARNLLSAVTRLLILADMVDVHLLLKSLRVVEDDL******************************************************************************LAAARAILKKHSTMLLTASKVYVRHPELAAAKENRNFVLGTTGFFTLAVTSLKKRSVSLLHQVYERMVMDPLAYNERVRPSL**RLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMAN*************IDHMCRK***LRRQLRKAVVDHERMVMDPLAYN************SIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSDFMETDIPILVLIEA**************************
**********VKWDPKNLEIRTMSVEKTLEPLVLQVTTL*********************AAVEKATENFIERGDAMSL************LKRGNMVRAARNLLSAVTRLLILADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDNIKAFGRNATELMAQAAKHGAEGSSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKHSTMLLTASKVYVRHPELAAAKENRNFVLGTTGFFTLAVTSLKKRSVSLLHQVYERMVM****************LESIISGAALMAD**********RIVAECNAVRQALQD*********************IDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYNERVRPSLEERL******************DRRERIVAECNAVRQALQDLLSDFMETDIPILV*****************ENFADHANKL***
MQVDHFGPIAVKWDPKNLEIRTMSVEKTLEPLVLQVTTLVN***************HVLVAAVEKATENFIERGDAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRLLILADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDNIKAFGRNATELM*************TQGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKHSTMLLTASKVYVRHPELAAAKENRNFVLGTTGFFTLAVTSLKKRSVSLLHQVYERMVMDPLAYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSDFMETDIPILVLIEAARS********AAENFADHANKLVEE
*****FGPIAVKWDPKNLEIRTMSVEKTLEPLVLQVTTLVNTKGP***KKGRSKRAHVLVAAVEKATENFIERGDAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRLLILADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDNIKAFGRNATELMAQAAKHGAEGSSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKHSTMLLTASKVYVRHPELAAAKENRNFVLGTTGFFTLAVTSLKKRSVSLLHQVYERMVMDPLAYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSDFMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVE*
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MQVDHFGPIAVKWDPKNLEIRTMSVEKTLEPLVLQVTTLVNTKGPSKKKKGRSKRAHVLVAAVEKATENFIERGDAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRLLILADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDNIKAFGRNATELMAQAAKHGAEGSSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKHSTMLLTASKVYVRHPELAAAKENRNFVLGTTGFFTLAVTSLKKRSVSLLHQVYERMVMDPLAYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSDFMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query481 2.2.26 [Sep-21-2011]
P35220 917 Catenin alpha OS=Drosophi yes N/A 0.706 0.370 0.653 1e-132
P35221 906 Catenin alpha-1 OS=Homo s yes N/A 0.717 0.380 0.514 1e-103
P26231 906 Catenin alpha-1 OS=Mus mu yes N/A 0.717 0.380 0.518 1e-103
Q3MHM6 906 Catenin alpha-1 OS=Bos ta yes N/A 0.717 0.380 0.511 1e-102
Q59I72 907 Catenin alpha-1 OS=Orycto yes N/A 0.717 0.380 0.510 1e-102
Q61301 953 Catenin alpha-2 OS=Mus mu no N/A 0.686 0.346 0.511 1e-102
P26232 953 Catenin alpha-2 OS=Homo s no N/A 0.686 0.346 0.511 1e-102
Q5R416 905 Catenin alpha-2 OS=Pongo no N/A 0.686 0.364 0.511 1e-101
A4IGI7 966 Catenin alpha-2 OS=Xenopu yes N/A 0.817 0.406 0.459 1e-101
P30997 906 Catenin alpha-2 OS=Gallus yes N/A 0.686 0.364 0.510 1e-99
>sp|P35220|CTNA_DROME Catenin alpha OS=Drosophila melanogaster GN=alpha-Cat PE=1 SV=2 Back     alignment and function desciption
 Score =  473 bits (1217), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 270/413 (65%), Positives = 298/413 (72%), Gaps = 73/413 (17%)

Query: 6   FGPIAVKWDPKNLEIRTMSVEKTLEPLVLQVTTLVNTKGPSKKKKGRSKRAHVLVAAVEK 65
           FG IA+KWDPKNLEIRTMSVEKTLEPLVLQVTTLVNTKGPSKKKKG+SKRA  LVAAVEK
Sbjct: 13  FGQIALKWDPKNLEIRTMSVEKTLEPLVLQVTTLVNTKGPSKKKKGKSKRASALVAAVEK 72

Query: 66  ATENFIERG-------------------------DAMSLAAREFADDPCSSLKRGNMVRA 100
           ATENFI++G                         DAMS+AAREF++DPCSSLKRGNMVRA
Sbjct: 73  ATENFIQKGEQIAYENPDITQEMLTAVDEVKKTGDAMSIAAREFSEDPCSSLKRGNMVRA 132

Query: 101 ARNLLSAVTRLLILADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDNIKAFGRNATEL 160
           ARNLLSAVTRLLILADMVDVHLLLKSL +VEDDL K+KNASSQ EL+DN++ FGRNA EL
Sbjct: 133 ARNLLSAVTRLLILADMVDVHLLLKSLHIVEDDLNKLKNASSQDELMDNMRQFGRNAGEL 192

Query: 161 MAQAAKHGAEGSSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAIL 220
                                            + QAAKRQ ELKDPQLRDDLAAARA+L
Sbjct: 193 ---------------------------------IKQAAKRQQELKDPQLRDDLAAARAML 219

Query: 221 KKHSTMLLTASKVYVRHPELAAAKENRNFVLGTTGFFTLAVTSLKKRSVSLLHQVY---- 276
           KKHSTMLLTASKVYVRHPEL  AK NR+F+L         ++ + +   S    +Y    
Sbjct: 220 KKHSTMLLTASKVYVRHPELDLAKVNRDFILKQVCDAVNTISDVAQGKSSQPTDIYSGAG 279

Query: 277 ----------ERMVMDPLAYNE-RVRPSLEERLESIISGAALMADSNCTRDDRRERIVAE 325
                     E +VMDP+ Y+E R R  LEERLESIIS AALMAD++CTRD+RRERIVAE
Sbjct: 280 ELAAALDDFDEGIVMDPMTYSEKRSRQLLEERLESIISAAALMADADCTRDERRERIVAE 339

Query: 326 CNAVRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDH 378
           CNAVRQALQDLLSEYM+NMS KD S GL RAID MCRKTRDLRRQLRKAVVDH
Sbjct: 340 CNAVRQALQDLLSEYMSNMSQKDNSPGLSRAIDQMCRKTRDLRRQLRKAVVDH 392
Associates with the cytoplasmic domain of a variety of cadherins. The association of catenins to cadherins produces a complex which is linked to the actin filament network, and which seems to be of primary importance for cadherins cell-adhesion properties. Can associate with the armadillo protein.
Drosophila melanogaster (taxid: 7227)
>sp|P35221|CTNA1_HUMAN Catenin alpha-1 OS=Homo sapiens GN=CTNNA1 PE=1 SV=1 Back     alignment and function description
>sp|P26231|CTNA1_MOUSE Catenin alpha-1 OS=Mus musculus GN=Ctnna1 PE=1 SV=1 Back     alignment and function description
>sp|Q3MHM6|CTNA1_BOVIN Catenin alpha-1 OS=Bos taurus GN=CTNNA1 PE=2 SV=1 Back     alignment and function description
>sp|Q59I72|CTNA1_RABIT Catenin alpha-1 OS=Oryctolagus cuniculus GN=CTNNA1 PE=3 SV=1 Back     alignment and function description
>sp|Q61301|CTNA2_MOUSE Catenin alpha-2 OS=Mus musculus GN=Ctnna2 PE=1 SV=3 Back     alignment and function description
>sp|P26232|CTNA2_HUMAN Catenin alpha-2 OS=Homo sapiens GN=CTNNA2 PE=1 SV=5 Back     alignment and function description
>sp|Q5R416|CTNA2_PONAB Catenin alpha-2 OS=Pongo abelii GN=CTNNA2 PE=2 SV=3 Back     alignment and function description
>sp|A4IGI7|CTNA2_XENTR Catenin alpha-2 OS=Xenopus tropicalis GN=ctnna2 PE=2 SV=1 Back     alignment and function description
>sp|P30997|CTNA2_CHICK Catenin alpha-2 OS=Gallus gallus GN=CTNNA2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query481
193673870 911 PREDICTED: catenin alpha-like [Acyrthosi 0.711 0.375 0.701 1e-153
66525427 909 PREDICTED: catenin alpha [Apis mellifera 0.711 0.376 0.689 1e-141
350397044 909 PREDICTED: catenin alpha-like [Bombus im 0.711 0.376 0.689 1e-141
383851832 909 PREDICTED: catenin alpha-like [Megachile 0.711 0.376 0.689 1e-141
345482997 909 PREDICTED: LOW QUALITY PROTEIN: catenin 0.711 0.376 0.694 1e-141
380024617 909 PREDICTED: LOW QUALITY PROTEIN: catenin 0.711 0.376 0.687 1e-140
307203783 909 Catenin alpha [Harpegnathos saltator] 0.711 0.376 0.675 1e-138
307187340 910 Catenin alpha [Camponotus floridanus] 0.711 0.375 0.673 1e-138
322789835 909 hypothetical protein SINV_06652 [Solenop 0.711 0.376 0.668 1e-137
242018616 944 alpha-1 catenin, putative [Pediculus hum 0.711 0.362 0.671 1e-137
>gi|193673870|ref|XP_001944375.1| PREDICTED: catenin alpha-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 294/419 (70%), Positives = 316/419 (75%), Gaps = 77/419 (18%)

Query: 4   DHFGPIAVKWDPKNLEIRTMSVEKTLEPLVLQVTTLVNTKGPSKKKKGRSKRAHVLVAAV 63
           D FGPI +KWDPKNLEIRTMSVEKTLEPLVLQVTTLVNTKG S+KKKGRSKRAHVLVAAV
Sbjct: 3   DQFGPITLKWDPKNLEIRTMSVEKTLEPLVLQVTTLVNTKGTSRKKKGRSKRAHVLVAAV 62

Query: 64  EKATENFIE-------------------------RGDAMSLAAREFADDPCSSLKRGNMV 98
           EKATENFIE                          GDAMS+AAREFA+DPC+S KR NMV
Sbjct: 63  EKATENFIEVGEQIAFENPDIKQEMLAAVEEVRKTGDAMSIAAREFAEDPCASAKRSNMV 122

Query: 99  RAARNLLSAVTRLLILADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDNIKAFGRNAT 158
           RAARNLLSAVTRLLILADMVDVHLLLKSLRVVEDDLEKVKNASSQ ELLDNIK FGR+A+
Sbjct: 123 RAARNLLSAVTRLLILADMVDVHLLLKSLRVVEDDLEKVKNASSQAELLDNIKVFGRSAS 182

Query: 159 ELMAQAAKHGAEGSSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARA 218
           ELM                                 +QAAKRQ ELKDPQLRDDLAAARA
Sbjct: 183 ELM---------------------------------SQAAKRQQELKDPQLRDDLAAARA 209

Query: 219 ILKKHSTMLLTASKVYVRHPELAAAKENRNFVLGTTGFFTLAVTSLKK-RSVSL---LHQ 274
           ILKKHSTMLLTASKVYVRHPELAAAK NR+FVL         ++ + + RS ++    +Q
Sbjct: 210 ILKKHSTMLLTASKVYVRHPELAAAKANRDFVLKQVCEAVNTISDVAQGRSAAMNDNGNQ 269

Query: 275 VY--------------ERMVMDPLAYNE-RVRPSLEERLESIISGAALMADSNCTRDDRR 319
           +Y              ERMVMDPL YNE R RPSLEERLESIISGAALMADS+CTRD+RR
Sbjct: 270 IYDGPGELAAALDDFDERMVMDPLVYNEVRTRPSLEERLESIISGAALMADSSCTRDERR 329

Query: 320 ERIVAECNAVRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDH 378
           ERIVAECNAVRQALQDLLSEYM+NMS+K+ SEGLERAIDHMCRKTRDLRRQLRKAVVDH
Sbjct: 330 ERIVAECNAVRQALQDLLSEYMSNMSVKETSEGLERAIDHMCRKTRDLRRQLRKAVVDH 388

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|66525427|ref|XP_625229.1| PREDICTED: catenin alpha [Apis mellifera] Back     alignment and taxonomy information
>gi|350397044|ref|XP_003484750.1| PREDICTED: catenin alpha-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383851832|ref|XP_003701435.1| PREDICTED: catenin alpha-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|345482997|ref|XP_003424721.1| PREDICTED: LOW QUALITY PROTEIN: catenin alpha-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|380024617|ref|XP_003696090.1| PREDICTED: LOW QUALITY PROTEIN: catenin alpha-like [Apis florea] Back     alignment and taxonomy information
>gi|307203783|gb|EFN82719.1| Catenin alpha [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307187340|gb|EFN72468.1| Catenin alpha [Camponotus floridanus] Back     alignment and taxonomy information
>gi|322789835|gb|EFZ14982.1| hypothetical protein SINV_06652 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|242018616|ref|XP_002429770.1| alpha-1 catenin, putative [Pediculus humanus corporis] gi|212514782|gb|EEB17032.1| alpha-1 catenin, putative [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query481
FB|FBgn0010215 917 alpha-Cat "alpha Catenin" [Dro 0.802 0.420 0.505 4.5e-82
UNIPROTKB|F1P510 905 CTNNA2 "Catenin alpha-2" [Gall 0.746 0.396 0.417 4.5e-66
UNIPROTKB|Q5R416 905 CTNNA2 "Catenin alpha-2" [Pong 0.746 0.396 0.414 1.2e-65
MGI|MGI:88275 953 Ctnna2 "catenin (cadherin asso 0.746 0.376 0.414 1.3e-65
UNIPROTKB|P26232 953 CTNNA2 "Catenin alpha-2" [Homo 0.746 0.376 0.414 1.7e-65
ZFIN|ZDB-GENE-060815-3 865 ctnna2 "catenin (cadherin-asso 0.388 0.216 0.517 3.1e-65
UNIPROTKB|P30997 906 CTNNA2 "Catenin alpha-2" [Gall 0.746 0.396 0.411 4.7e-64
UNIPROTKB|E2R9S7 906 CTNNA1 "Uncharacterized protei 0.750 0.398 0.424 5.8e-61
UNIPROTKB|Q6GLP0 966 ctnna2 "Catenin alpha-2" [Xeno 0.744 0.370 0.411 7.1e-61
UNIPROTKB|F1RGJ2 906 CTNNA1 "Uncharacterized protei 0.758 0.402 0.422 7.6e-61
FB|FBgn0010215 alpha-Cat "alpha Catenin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
 Identities = 211/417 (50%), Positives = 255/417 (61%)

Query:     6 FGPIAVKWDPKNLEIRTMSVEKTLEPLVLQVTTLVNTXXXXXXXXXXXXXAHVLVAAVEK 65
             FG IA+KWDPKNLEIRTMSVEKTLEPLVLQVTTLVNT             A  LVAAVEK
Sbjct:    13 FGQIALKWDPKNLEIRTMSVEKTLEPLVLQVTTLVNTKGPSKKKKGKSKRASALVAAVEK 72

Query:    66 ATENFIERGDAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRLLILADMVDVHLLLK 125
             ATENFI++G+ +   A E  D     L   + V+   + +S   R     D         
Sbjct:    73 ATENFIQKGEQI---AYENPDITQEMLTAVDEVKKTGDAMSIAAREFS-EDPCSSLKRGN 128

Query:   126 SLRVVEDDLEKVKNASSQGELLD-NIKAFGRNATELMAQAAKHGAEGSSATQGELLDNIK 184
              +R   + L  V       +++D ++     +  E      K+     +++Q EL+DN++
Sbjct:   129 MVRAARNLLSAVTRLLILADMVDVHLLLKSLHIVEDDLNKLKN-----ASSQDELMDNMR 183

Query:   185 AFGRNATELMAQAAKRQMELKDPQXXXXXXXXXXILKKHSTMLLTASKVYVRHPELAAAK 244
              FGRNA EL+ QAAKRQ ELKDPQ          +LKKHSTMLLTASKVYVRHPEL  AK
Sbjct:   184 QFGRNAGELIKQAAKRQQELKDPQLRDDLAAARAMLKKHSTMLLTASKVYVRHPELDLAK 243

Query:   245 ENRNFVLGTT--GFFTLAVTSLKKRS------------VSLLHQVYERMVMDPLAYNE-R 289
              NR+F+L        T++  +  K S             + L    E +VMDP+ Y+E R
Sbjct:   244 VNRDFILKQVCDAVNTISDVAQGKSSQPTDIYSGAGELAAALDDFDEGIVMDPMTYSEKR 303

Query:   290 VRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMSIKDP 349
              R  LEERLESIIS AALMAD++CTRD+RRERIVAECNAVRQALQDLLSEYM+NMS KD 
Sbjct:   304 SRQLLEERLESIISAAALMADADCTRDERRERIVAECNAVRQALQDLLSEYMSNMSQKDN 363

Query:   350 SEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYNERVRPSLEERLESIISG 406
             S GL RAID MCRKTRDLRRQLRKAVVDH   V D  ++ E   P L+  +E+  SG
Sbjct:   364 SPGLSRAIDQMCRKTRDLRRQLRKAVVDH---VSD--SFLETTTPLLD-LIEAAKSG 414
GO:0005515 "protein binding" evidence=IPI
GO:0005915 "zonula adherens" evidence=NAS
GO:0016342 "catenin complex" evidence=ISS
GO:0007016 "cytoskeletal anchoring at plasma membrane" evidence=ISS
GO:0003779 "actin binding" evidence=ISS
GO:0008092 "cytoskeletal protein binding" evidence=ISS
GO:0030720 "oocyte localization involved in germarium-derived egg chamber formation" evidence=TAS
GO:0005912 "adherens junction" evidence=NAS
GO:0005914 "spot adherens junction" evidence=NAS
GO:0030055 "cell-substrate junction" evidence=NAS
GO:0007155 "cell adhesion" evidence=IEA;NAS
GO:0045296 "cadherin binding" evidence=IEA;NAS
GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS
GO:0005198 "structural molecule activity" evidence=IEA
GO:0015629 "actin cytoskeleton" evidence=IEA
GO:0005913 "cell-cell adherens junction" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
UNIPROTKB|F1P510 CTNNA2 "Catenin alpha-2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R416 CTNNA2 "Catenin alpha-2" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
MGI|MGI:88275 Ctnna2 "catenin (cadherin associated protein), alpha 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P26232 CTNNA2 "Catenin alpha-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060815-3 ctnna2 "catenin (cadherin-associated protein), alpha 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P30997 CTNNA2 "Catenin alpha-2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9S7 CTNNA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q6GLP0 ctnna2 "Catenin alpha-2" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|F1RGJ2 CTNNA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P35220CTNA_DROMENo assigned EC number0.65370.70680.3707yesN/A
P26231CTNA1_MOUSENo assigned EC number0.51890.71720.3807yesN/A
Q3MHM6CTNA1_BOVINNo assigned EC number0.51180.71720.3807yesN/A
P35221CTNA1_HUMANNo assigned EC number0.51420.71720.3807yesN/A
Q59I72CTNA1_RABITNo assigned EC number0.51060.71720.3803yesN/A
P30997CTNA2_CHICKNo assigned EC number0.51050.68600.3642yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query481
pfam01044 850 pfam01044, Vinculin, Vinculin family 1e-114
>gnl|CDD|216263 pfam01044, Vinculin, Vinculin family Back     alignment and domain information 
 Score =  354 bits (911), Expect = e-114
 Identities = 189/506 (37%), Positives = 245/506 (48%), Gaps = 137/506 (27%)

Query: 19  EIRTMSVEKTLEPLVLQVTTLVNTKGPSKKKKGRSKRAHVLVAAVEKATENFIERG---- 74
           E RT +VEK LEPL  QVTTLV T  PS+K  G S      VAAV +A  N IE G    
Sbjct: 1   EFRTKTVEKILEPLAQQVTTLVITHEPSEKDGGASPDLTAPVAAVSQAVSNLIEVGYDIA 60

Query: 75  ---------------------DAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRLLI 113
                                  M  A+REFA DP SS KRG ++R AR LLSAV+RLLI
Sbjct: 61  NSSPDLKQDMPPALERVEKTGQLMEQASREFASDPYSSPKRGKLIRGARGLLSAVSRLLI 120

Query: 114 LADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDNIKAFGRNATELMAQAAKHGAEGSS 173
           LAD  DV  +++  + V D L   + A                                 
Sbjct: 121 LADEADVRKIIRVCKKVLDYLAVAEVAE-------------------------------- 148

Query: 174 ATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKHSTMLLTASKV 233
            T  +L+   K  G N T+L     +RQ EL     RD LAAAR  LKK + +L+TA K+
Sbjct: 149 -TMEDLVQFYKDLGPNMTKLNKMVDRRQQELTHQVHRDILAAARDTLKKLAPILITAMKI 207

Query: 234 YVRHPELAAAKENRNF--------------VLGTTGFFTL--AVTSLKKRSVSLLHQVYE 277
           +VRHP +  A+ENR++              VL  T +  +  A++ +     + L  + +
Sbjct: 208 FVRHPGVEEARENRDYTAKQMSDAMNEIIRVLQLTSYTVMKKALSGIGSELAAALDWLDD 267

Query: 278 RMVMDPLAYN-ERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECN-AVRQALQD 335
            +++DP  Y  ER RPSLEER+ESIISGAALMADS CTR +R + IVAECN A RQALQD
Sbjct: 268 PIIIDPATYIEERCRPSLEERIESIISGAALMADSLCTRRNRGQAIVAECNGAGRQALQD 327

Query: 336 LLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYNERVRPS 395
           LLSEYM     KD  + L  AID M +K                                
Sbjct: 328 LLSEYMKLAGRKDDLDALCDAIDRMRKK-------------------------------- 355

Query: 396 LEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSD-FMETDIPILVLIE 454
                               TRD RR         +R+A+ D +SD F++T  P+ +LIE
Sbjct: 356 --------------------TRDLRR--------QLRKAVVDHVSDSFLDTTTPLKLLIE 387

Query: 455 AARSGNEKEVEKAAENFADHANKLVE 480
           AA++G E+  E+ A+NF +HAN+LVE
Sbjct: 388 AAKAGREENFEEKAQNFQEHANRLVE 413

Length = 850

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 481
KOG3681|consensus 835 100.0
PF01044 968 Vinculin: Vinculin family; InterPro: IPR006077 Vin 100.0
PF01044 968 Vinculin: Vinculin family; InterPro: IPR006077 Vin 99.42
KOG3681|consensus 835 99.29
PF08913125 VBS: Vinculin Binding Site; InterPro: IPR015009 Vi 84.65
>KOG3681|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.6e-93  Score=768.17  Aligned_cols=371  Identities=58%  Similarity=0.812  Sum_probs=358.5

Q ss_pred             CccceehhhhhhhhHHhhhhhhhcccC--CCCcccCCcchhhhhHHHHHHHHHHHHHHhh--------------------
Q psy5464          17 NLEIRTMSVEKTLEPLVLQVTTLVNTK--GPSKKKKGRSKRAHVLVAAVEKATENFIERG--------------------   74 (481)
Q Consensus        17 ~lEIrtksVE~~LePLv~QVTtLVn~k--~~~~k~~g~s~~a~~~~~aV~~A~enfv~~G--------------------   74 (481)
                      ++||||++||++|+||++|||||||++  +|+++|+|++++++++|+.+++|++||+.+|                    
T Consensus         1 ~lei~T~tVE~~LePlv~QVTtLVn~~e~~~~~~k~~~~~~a~v~v~s~~~a~~~~v~k~~~ia~e~~~l~~em~~A~~~   80 (835)
T KOG3681|consen    1 MLEIRTRTVESTLEPLVQQVTTLVNTKEEGPSDGKAGRSKTAPVAVASAEVATENFVGKGEKIAEEDQILKQEMPAALEE   80 (835)
T ss_pred             CCcchhhhHHHHHHHHHHHHHHHHhccccCCCccccccccchhHHHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHH
Confidence            479999999999999999999999997  7888999999999999999999999999999                    


Q ss_pred             -----HHHHHHHhHhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHhcCChHHHHHH
Q psy5464          75 -----DAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRLLILADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDN  149 (481)
Q Consensus        75 -----~~m~~Aa~~f~~dp~s~~~R~~mvraaR~lLs~vtrlLilaD~vdV~~il~~~~~v~~~l~~~~~~~s~~el~~~  149 (481)
                           +.|..++++|.+||||++||++||+|||+||||||||||||||+||++||++++.|+++|++++++.|++||+++
T Consensus        81 V~~~~~~m~~aa~~~~~Dp~s~~~R~~~i~aaR~LLsavtrlLllaD~~dV~~ii~~~~~V~~~l~~le~~~t~~dlv~~  160 (835)
T KOG3681|consen   81 VRKAGDLMKQAAREFDDDPCSVPKRGNLIRAARGLLSAVTRLLLLADMVDVKKIIRSCKKVLETLEVLENVNTMQDLVQI  160 (835)
T ss_pred             HHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence                 579999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHhhccCCCCccchhhhhhhhhhhhhhHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHH
Q psy5464         150 IKAFGRNATELMAQAAKHGAEGSSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKHSTMLLT  229 (481)
Q Consensus       150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Rq~dLkd~~~r~~l~aar~~Lkk~~~mL~t  229 (481)
                      |++||                                 |+|++|++++++||+|||||.|||+|++||+.||+++|||||
T Consensus       161 ~k~lg---------------------------------~~m~~l~~~~~~RqqeLk~~~~rd~laaar~~lk~~~p~L~t  207 (835)
T KOG3681|consen  161 FKQLG---------------------------------PEMVKLAHMAGKRQQELKDPKHRDQLAAARAVLKKLAPMLLT  207 (835)
T ss_pred             HHHHh---------------------------------HHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHhHHHHH
Confidence            99999                                 999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCCcHHHHHHHHhhHhhh-----hHhHhhccCc-----------hHHHHHHHHHHHHhhccCcccccc-cccc
Q psy5464         230 ASKVYVRHPELAAAKENRNFVLGTT-----GFFTLAVTSL-----------KKRSVSLLHQVYERMVMDPLAYNE-RVRP  292 (481)
Q Consensus       230 a~k~~~rhp~~~~a~~nR~~v~~~~-----~i~~~~~~~~-----------~~~~~~~l~~~~~~~~~dp~~~~~-~~r~  292 (481)
                      |||+|||||+|+.+++||||||.+|     +|++++|+..           .|.+++++.+|++++.++|++|++ +.||
T Consensus       208 ask~~lrhp~~~~a~~NRd~v~~~m~~aln~I~~v~q~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~l~~~~~~~r~  287 (835)
T KOG3681|consen  208 ASKTCLRHPNCESAKKNRDYVFDQMSDALNEIIRVLQLTSPDEDTSESSGSAGKLASALIDFKKNIAIDPLTNPEARSRP  287 (835)
T ss_pred             HHHHHHcCccHHHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcchhccchhHHHHHHhHHHHHHHhhhhhchhhccCc
Confidence            9999999999999999999999999     6778887421           355789999999999999999998 9999


Q ss_pred             cHHHHHHHHHHHHHhhhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHhHHHHHHHH
Q psy5464         293 SLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLR  372 (481)
Q Consensus       293 ~Le~~Le~Iis~a~~~aDs~~Tr~~rRerIvaeCn~lRqaLqdLLseym~n~g~k~~se~Le~AI~~m~kktrDLRRqLr  372 (481)
                      +||++||+||+||++||||.| +|+|||+|+++|++++|+|++++++||++.|+++.+++++.+|++|+++++|||||||
T Consensus       288 ~le~~le~Iis~aa~~aDs~~-~d~rreri~a~~~al~q~l~d~l~E~~~~~~~k~~~~~l~~ai~~l~kkl~dLrrqLr  366 (835)
T KOG3681|consen  288 SLEVRLEQIISGAALMADSCC-RDLRRERIVAECNALRQALQDLLSEYQSNAGRKGRSPALELAIDQLTKKLKDLKRQLR  366 (835)
T ss_pred             hHHHHHHHHHHHHHHHHHHHh-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccccChhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999977 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhcCccccccccccchHHHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q psy5464         373 KAVVDHERMVMDPLAYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSDFMETDIPILVL  452 (481)
Q Consensus       373 kAavDhV~~~~dpl~~~~~~r~~Le~~Le~ii~g~a~~ADsa~Tr~e~rE~Iv~~Cn~lRqaLqdLlsey~~~~~~l~~l  452 (481)
                      +|++|||                               .|                            .|+.+.+||+.+
T Consensus       367 ~a~~d~i-------------------------------Sd----------------------------~fldt~tpllll  387 (835)
T KOG3681|consen  367 KAATDHV-------------------------------SD----------------------------SFLDTTTPLLLL  387 (835)
T ss_pred             HHHHHHH-------------------------------HH----------------------------HHHhhhhHHHHH
Confidence            9999999                               77                            899999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHhHhhh
Q psy5464         453 IEAARSGNEKEVEKAAENFADHANKLVE  480 (481)
Q Consensus       453 ~~aA~~g~~~~~~e~~~~f~e~~~~Lve  480 (481)
                      +.||+.||++.++||+++|+||+++|+|
T Consensus       388 ~eaa~~G~ee~~~eya~~f~eha~~lve  415 (835)
T KOG3681|consen  388 IEAAKAGNEEEVKEYAANFREHANKLVE  415 (835)
T ss_pred             HHHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999997

>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane Back     alignment and domain information
>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane Back     alignment and domain information
>KOG3681|consensus Back     alignment and domain information
>PF08913 VBS: Vinculin Binding Site; InterPro: IPR015009 Vinculin binding sites are predominantly found in talin and talin-like molecules, enabling binding of vinculin to talin, stabilising integrin-mediated cell-matrix junctions Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query481
4igg_A 832 Full-Length Human Alpha-Catenin Crystal Structure L 2e-73
4igg_A 832 Full-Length Human Alpha-Catenin Crystal Structure L 1e-34
4ehp_B111 Crystal Structure Of Human Vinculin Head Domain (Re 3e-35
4ehp_B111 Crystal Structure Of Human Vinculin Head Domain (Re 6e-25
1dow_A205 Crystal Structure Of A Chimera Of Beta-Catenin And 2e-31
1dov_A181 Crystal Structure Of The Alpha-Catenin Dimerization 1e-29
4e18_B59 Alpha-E-Catenin Is An Autoinhibited Molecule That C 3e-23
4e18_B59 Alpha-E-Catenin Is An Autoinhibited Molecule That C 1e-21
4e17_B40 Alpha-E-Catenin Is An Autoinhibited Molecule That C 2e-12
4e17_B40 Alpha-E-Catenin Is An Autoinhibited Molecule That C 8e-11
1h6g_A 256 Alpha-Catenin M-Domain Length = 256 2e-10
1l7c_A 269 Alpha-Catenin Fragment, Residues 385-651 Length = 2 2e-09
>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure Length = 832 Back     alignment and structure 
Iteration: 1

 Score =  273 bits (697), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 165/337 (48%), Positives = 207/337 (61%), Gaps = 54/337 (16%)
Query: 59  LVAAVEKATENFIERGDAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRLLILADMV 118
           LVAAVE    +  ++GD M  AA EFADDPCSS+KRGNMVRAAR LLSAVTRLLILADM 
Sbjct: 9   LVAAVE----DVRKQGDLMKAAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMA 64
Query: 119 DVHLLLKSLRVVEDDLEKVKNASSQGELLDNIKAFGRNATELMAQAAKHGAEGSSATQGE 178
           DV+ LL  L+VVED + K++NA ++ +L    KA      +L                  
Sbjct: 65  DVYKLLVQLKVVEDGILKLRNAGNEQDLGIQYKALKPEVDKL------------------ 106
Query: 179 LLDNIKAFGRNATELMAQAAKRQMELKDPQXXXXXXXXXXILKKHSTMLLTASKVYVRHP 238
              NI             AAKRQ ELKD            IL+K+  +L TAS+  ++HP
Sbjct: 107 ---NI------------MAAKRQQELKDVGHRDQMAAARGILQKNVPILYTASQACLQHP 151
Query: 239 ELAAAKENRNFVLGTTGFFTLAVTSLKKRSVS----------------LLHQVYERMVMD 282
           ++AA K NR+ +          +++  + + S                 L+   +++++D
Sbjct: 152 DVAAYKANRDLIYKQLQQAVTGISNAAQATASDDASQHQGGGGGELAYALNNFDKQIIVD 211
Query: 283 PLAYNE-RVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYM 341
           PL+++E R RPSLEERLESIISGAALMADS+CTRDDRRERIVAECNAVRQALQDLLSEYM
Sbjct: 212 PLSFSEERFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYM 271
Query: 342 ANMSIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDH 378
            N   K+ S+ L  AID M +KTRDLRRQLRKAV+DH
Sbjct: 272 GNAGRKERSDALNSAIDKMTKKTRDLRRQLRKAVMDH 308
>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure Length = 832 Back     alignment and structure
>pdb|4EHP|B Chain B, Crystal Structure Of Human Vinculin Head Domain (Residues 1-252) In Complex With Alpha-Catenin (Residues 277-382) Length = 111 Back     alignment and structure
>pdb|4EHP|B Chain B, Crystal Structure Of Human Vinculin Head Domain (Residues 1-252) In Complex With Alpha-Catenin (Residues 277-382) Length = 111 Back     alignment and structure
>pdb|1DOW|A Chain A, Crystal Structure Of A Chimera Of Beta-Catenin And Alpha- Catenin Length = 205 Back     alignment and structure
>pdb|1DOV|A Chain A, Crystal Structure Of The Alpha-Catenin Dimerization Domain Length = 181 Back     alignment and structure
>pdb|4E18|B Chain B, Alpha-E-Catenin Is An Autoinhibited Molecule That Co-Activates Vinculin Length = 59 Back     alignment and structure
>pdb|4E18|B Chain B, Alpha-E-Catenin Is An Autoinhibited Molecule That Co-Activates Vinculin Length = 59 Back     alignment and structure
>pdb|4E17|B Chain B, Alpha-E-Catenin Is An Autoinhibited Molecule That Co-Activates Vinculin Length = 40 Back     alignment and structure
>pdb|4E17|B Chain B, Alpha-E-Catenin Is An Autoinhibited Molecule That Co-Activates Vinculin Length = 40 Back     alignment and structure
>pdb|1H6G|A Chain A, Alpha-Catenin M-Domain Length = 256 Back     alignment and structure
>pdb|1L7C|A Chain A, Alpha-Catenin Fragment, Residues 385-651 Length = 269 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query481
3rf3_A258 Vinculin, metavinculin; alpha-helix bundle domain, 1e-46
1dow_A205 Alpha-catenin; four-helix bundle, cell adhesion; 1 4e-36
4ehp_B111 Catenin alpha-1; adherens junctions, vinculin bind 6e-34
4ehp_B111 Catenin alpha-1; adherens junctions, vinculin bind 3e-19
1tr2_A 1066 Vinculin isoform 1; actin-binding, cell adhesion; 2e-29
1tr2_A 1066 Vinculin isoform 1; actin-binding, cell adhesion; 9e-05
4e18_B59 Catenin alpha-1; four helix bundle, cell adhesion; 4e-22
4e18_B59 Catenin alpha-1; four helix bundle, cell adhesion; 2e-20
4e17_B40 Catenin alpha-1; four helix bundle, cell adhesion; 1e-14
4e17_B40 Catenin alpha-1; four helix bundle, cell adhesion; 6e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1h6g_A 256 Alpha-1 catenin; adhesion modulation, cytoskeleton 3e-05
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A 1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A 3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A 1t01_A Length = 258 Back     alignment and structure
 Score =  161 bits (409), Expect = 1e-46
 Identities = 49/266 (18%), Positives = 93/266 (34%), Gaps = 65/266 (24%)

Query: 19  EIRTMSVEKTLEPLVLQVTTLVNTKGPSKKKKGRSKRAHVLVAAVEKATENFIERG---- 74
              T ++E  LEP+  Q++ LV      +            VAAV+ A  N +  G    
Sbjct: 3   VFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKETV 62

Query: 75  -----------------------DAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRL 111
                                    +  AA+    DP S   R  ++  +R +LS  + L
Sbjct: 63  QTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDL 122

Query: 112 LILADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDNIKAFGRNATELMAQAAKHGAEG 171
           L+  D  +V  +++  + + + L   +   +                             
Sbjct: 123 LLTFDEAEVRKIIRVCKGILEYLTVAEVVET----------------------------- 153

Query: 172 SSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKHSTMLLTAS 231
                 +L+   K  G   T++     +RQ EL   + R  L  +   +K+   +L++A 
Sbjct: 154 ----MEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLISAM 209

Query: 232 KVYV-----RHPELAAAKENRNFVLG 252
           K++V     ++  +  A +NRNF + 
Sbjct: 210 KIFVTTKNSKNQGIEEALKNRNFTVE 235
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus} SCOP: a.24.9.1 PDB: 1dov_A Length = 205 Back     alignment and structure
>4ehp_B Catenin alpha-1; adherens junctions, vinculin binding site, vinculin binding helix bundle, cell adhesion; 2.66A {Homo sapiens} Length = 111 Back     alignment and structure
>4ehp_B Catenin alpha-1; adherens junctions, vinculin binding site, vinculin binding helix bundle, cell adhesion; 2.66A {Homo sapiens} Length = 111 Back     alignment and structure
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A Length = 1066 Back     alignment and structure
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A Length = 1066 Back     alignment and structure
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus} Length = 59 Back     alignment and structure
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus} Length = 59 Back     alignment and structure
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus} Length = 40 Back     alignment and structure
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus} Length = 40 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A Length = 256 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query481
4igg_A 832 Catenin alpha-1; asymmetric dimer, adherens juncti 100.0
3rf3_A258 Vinculin, metavinculin; alpha-helix bundle domain, 100.0
1dow_A205 Alpha-catenin; four-helix bundle, cell adhesion; 1 100.0
1tr2_A 1066 Vinculin isoform 1; actin-binding, cell adhesion; 100.0
4ehp_B111 Catenin alpha-1; adherens junctions, vinculin bind 100.0
4ehp_B111 Catenin alpha-1; adherens junctions, vinculin bind 99.85
4e18_B59 Catenin alpha-1; four helix bundle, cell adhesion; 99.81
4e18_B59 Catenin alpha-1; four helix bundle, cell adhesion; 99.81
4e17_B40 Catenin alpha-1; four helix bundle, cell adhesion; 99.52
4e17_B40 Catenin alpha-1; four helix bundle, cell adhesion; 99.49
4igg_A 832 Catenin alpha-1; asymmetric dimer, adherens juncti 99.47
1tr2_A 1066 Vinculin isoform 1; actin-binding, cell adhesion; 98.08
1h6g_A 256 Alpha-1 catenin; adhesion modulation, cytoskeleton 97.6
1h6g_A256 Alpha-1 catenin; adhesion modulation, cytoskeleton 96.33
3dyj_A332 Talin-1; helix bundles, cytoskeletal protein, inte 95.22
2x0c_A309 Talin-1; cytoskeleton, cell membrane, actin, synem 91.33
2l7a_A131 Talin-1; vinculin, bundle, focal adhesion, integri 88.88
1u89_A139 Talin 1, talin; 4-helix bundle, LEFT-handed, struc 86.87
3dyj_A332 Talin-1; helix bundles, cytoskeletal protein, inte 83.23
>4igg_A Catenin alpha-1; asymmetric dimer, adherens junctions, F-actin binding, cell; 3.66A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.5e-74  Score=635.57  Aligned_cols=328  Identities=59%  Similarity=0.822  Sum_probs=314.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhHhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHhc
Q psy5464          61 AAVEKATENFIERGDAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRLLILADMVDVHLLLKSLRVVEDDLEKVKNA  140 (481)
Q Consensus        61 ~aV~~A~enfv~~G~~m~~Aa~~f~~dp~s~~~R~~mvraaR~lLs~vtrlLilaD~vdV~~il~~~~~v~~~l~~~~~~  140 (481)
                      +-.-.|.+..-..|+.|..||++|.+||||+++|+.||+|||+||++||||||||||+||++||.++++|+++|++++++
T Consensus         7 ~eM~~A~~~v~~ag~~l~~aa~~l~~DP~s~~~R~~lV~aAR~LLs~vTrLLllaD~~~VrkIi~~~~~Vl~~L~~le~v   86 (832)
T 4igg_A            7 EELVAAVEDVRKQGDLMKAAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMADVYKLLVQLKVVEDGILKLRNA   86 (832)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44556788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHhhhhHHHHHHHHhhccCCCCccchhhhhhhhhhhhhhHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q psy5464         141 SSQGELLDNIKAFGRNATELMAQAAKHGAEGSSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAIL  220 (481)
Q Consensus       141 ~s~~el~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Rq~dLkd~~~r~~l~aar~~L  220 (481)
                      +|++||+++|++||                                 ++|++|++++++||+|||||.+|++|++||++|
T Consensus        87 ~s~~eLv~~f~~f~---------------------------------~~m~eL~~lt~~Rq~dLk~~~~R~~L~aAr~~L  133 (832)
T 4igg_A           87 GNEQDLGIQYKALK---------------------------------PEVDKLNIMAAKRQQELKDVGHRDQMAAARGIL  133 (832)
T ss_dssp             CSHHHHHHHHHHHH---------------------------------HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH---------------------------------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            99999999999999                                 999999999999999999999999999999999


Q ss_pred             HHhhHHHHHhhhhhhcCCCcHHHHHHHHhhHhhh-----hHhHhhccCc----------hH-HHHHHHHHHHHhhccCcc
Q psy5464         221 KKHSTMLLTASKVYVRHPELAAAKENRNFVLGTT-----GFFTLAVTSL----------KK-RSVSLLHQVYERMVMDPL  284 (481)
Q Consensus       221 kk~~~mL~ta~k~~~rhp~~~~a~~nR~~v~~~~-----~i~~~~~~~~----------~~-~~~~~l~~~~~~~~~dp~  284 (481)
                      |+++||||||||+|++||++++|++||||||++|     .|..++|+..          .| .++++|++|+++++|+|+
T Consensus       134 k~~spmLlta~Kt~lrhp~~~~A~~nRd~v~~qm~~al~~Ii~vlq~~~~~e~~~~~~~~g~~l~~al~~~~~~i~~~p~  213 (832)
T 4igg_A          134 QKNVPILYTASQACLQHPDVAAYKANRDLIYKQLQQAVTGISNAAQATASDDASQHQGGGGGELAYALNNFDKQIIVDPL  213 (832)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCSTTTTCCSSCSCHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccchHHHHHHHHHHHHHHHhcCcc
Confidence            9999999999999999999999999999999999     4667777531          24 699999999999999999


Q ss_pred             cccc-cccccHHHHHHHHHHHHHhhhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHH
Q psy5464         285 AYNE-RVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRK  363 (481)
Q Consensus       285 ~~~~-~~r~~Le~~Le~Iis~a~~~aDs~~Tr~~rRerIvaeCn~lRqaLqdLLseym~n~g~k~~se~Le~AI~~m~kk  363 (481)
                      +|.+ ++||+|+++|+.||+|+++||||+||+|+||++||++|+++|++|++|+++||+++|.++.+++++.+|++|+++
T Consensus       214 ~~~e~~~r~~L~~~Le~iv~~a~~~aDs~~t~~~~Re~Iv~~C~~vrq~L~dLl~~~~~~~g~~~~s~~l~~ai~~l~~k  293 (832)
T 4igg_A          214 SFSEERFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYMGNAGRKERSDALNSAIDKMTKK  293 (832)
T ss_dssp             SSCCSSHHHHHHHHHHHHHHHHHHHHSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSCCHHHHHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHH
Confidence            9998 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhhhhcCccccccccccchHHHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5464         364 TRDLRRQLRKAVVDHERMVMDPLAYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSDFM  443 (481)
Q Consensus       364 trDLRRqLrkAavDhV~~~~dpl~~~~~~r~~Le~~Le~ii~g~a~~ADsa~Tr~e~rE~Iv~~Cn~lRqaLqdLlsey~  443 (481)
                      |+||||+|++|++|||                               +|                            .|.
T Consensus       294 ~~dL~r~L~~Avvdqv-------------------------------sD----------------------------~F~  314 (832)
T 4igg_A          294 TRDLRRQLRKAVMDHV-------------------------------SD----------------------------SFL  314 (832)
T ss_dssp             HHHHHHHHHHHHHHHH-------------------------------HH----------------------------HTS
T ss_pred             HHHHHHHHHHHHHHHH-------------------------------HH----------------------------HHH
Confidence            9999999999999999                               66                            688


Q ss_pred             hcchhHHHHHHHHhcCCHHHHHHHHHHHHHHHhHhhh
Q psy5464         444 ETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVE  480 (481)
Q Consensus       444 ~~~~~l~~l~~aA~~g~~~~~~e~~~~f~e~~~~Lve  480 (481)
                      .++.||.+|+.||..||++.+++|++.|+||+++|+|
T Consensus       315 dt~~pL~~Li~Aa~~g~ee~~~e~a~~F~eha~~lve  351 (832)
T 4igg_A          315 ETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIE  351 (832)
T ss_dssp             SSSHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCchHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999987
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A 1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A 4e17_A 4e18_A 3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A ... Back     alignment and structure
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus} SCOP: a.24.9.1 PDB: 1dov_A Back     alignment and structure
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A Back     alignment and structure
>4ehp_B Catenin alpha-1; adherens junctions, vinculin binding site, vinculin binding helix bundle, cell adhesion; 2.66A {Homo sapiens} Back     alignment and structure
>4ehp_B Catenin alpha-1; adherens junctions, vinculin binding site, vinculin binding helix bundle, cell adhesion; 2.66A {Homo sapiens} Back     alignment and structure
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus} Back     alignment and structure
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus} Back     alignment and structure
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus} Back     alignment and structure
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus} Back     alignment and structure
>4igg_A Catenin alpha-1; asymmetric dimer, adherens junctions, F-actin binding, cell; 3.66A {Homo sapiens} Back     alignment and structure
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A Back     alignment and structure
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A Back     alignment and structure
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A Back     alignment and structure
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B Back     alignment and structure
>2x0c_A Talin-1; cytoskeleton, cell membrane, actin, synemin, integrin, vincu cell adhesion, cell projection; 2.00A {Mus musculus} PDB: 1zw3_B Back     alignment and structure
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus} Back     alignment and structure
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein; NMR {Mus musculus} SCOP: a.216.1.1 Back     alignment and structure
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 481
d1dova_181 a.24.9.1 (A:) alpha-catenin {Mouse (Mus musculus) 1e-39
d1t01a1125 a.24.9.1 (A:1-125) Vinculin {Chicken (Gallus gallu 1e-26
d1t01a2127 a.24.9.1 (A:126-252) Vinculin {Chicken (Gallus gal 1e-26
d1h6ga1131 a.24.9.1 (A:377-507) alpha-catenin {Human (Homo sa 1e-07
d1st6a5158 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gal 3e-05
d1st6a5158 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gal 6e-04
d1u89a1138 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus 3e-04
>d1dova_ a.24.9.1 (A:) alpha-catenin {Mouse (Mus musculus) [TaxId: 10090]} Length = 181 Back     information, alignment and structure

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: alpha-catenin/vinculin-like
family: alpha-catenin/vinculin
domain: alpha-catenin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  139 bits (351), Expect = 1e-39
 Identities = 85/187 (45%), Positives = 109/187 (58%), Gaps = 33/187 (17%)

Query: 66  ATENFIERGDAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRLLILADMVDVHLLLK 125
           A E+  ++GD M  AA EFADDPCSS+KRGNMVRAAR LLSAVTRLLILADM DV+ LL 
Sbjct: 12  AVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMADVYKLLV 71

Query: 126 SLRVVEDDLEKVKNASSQGELLDNIKAFGRNATELMAQAAKHGAEGSSATQGELLDNIKA 185
            L+VVED + K++NA +                                 + +L    KA
Sbjct: 72  QLKVVEDGILKLRNAGN---------------------------------EQDLGIQYKA 98

Query: 186 FGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKHSTMLLTASKVYVRHPELAAAKE 245
                 +L   AAKRQ ELKD   RD +AAAR IL+K+  +L TAS+  ++HP++AA K 
Sbjct: 99  LKPEVDKLNIMAAKRQQELKDVGNRDQMAAARGILQKNVPILYTASQACLQHPDVAAYKA 158

Query: 246 NRNFVLG 252
           NR+ +  
Sbjct: 159 NRDLIYK 165
>d1t01a1 a.24.9.1 (A:1-125) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 125 Back     information, alignment and structure
>d1t01a2 a.24.9.1 (A:126-252) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 127 Back     information, alignment and structure
>d1h6ga1 a.24.9.1 (A:377-507) alpha-catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 131 Back     information, alignment and structure
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 158 Back     information, alignment and structure
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 158 Back     information, alignment and structure
>d1u89a1 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 138 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query481
d1dova_181 alpha-catenin {Mouse (Mus musculus) [TaxId: 10090] 100.0
d1t01a2127 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 100.0
d1t01a1125 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 99.92
d1st6a5158 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 99.51
d1h6ga1131 alpha-catenin {Human (Homo sapiens) [TaxId: 9606]} 98.87
d1st6a4117 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 97.07
d1st6a3119 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 96.94
d1u89a1138 Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} 96.83
d1h6ga1131 alpha-catenin {Human (Homo sapiens) [TaxId: 9606]} 95.93
d2b0ha1136 Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} 94.86
d1st6a672 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 91.21
d1u89a1138 Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} 88.15
d2b0ha1136 Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} 87.65
>d1dova_ a.24.9.1 (A:) alpha-catenin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: alpha-catenin/vinculin-like
family: alpha-catenin/vinculin
domain: alpha-catenin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-47  Score=355.96  Aligned_cols=172  Identities=51%  Similarity=0.662  Sum_probs=164.1

Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHhHhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHH
Q psy5464          58 VLVAAVEKATENFIERGDAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRLLILADMVDVHLLLKSLRVVEDDLEKV  137 (481)
Q Consensus        58 ~~~~aV~~A~enfv~~G~~m~~Aa~~f~~dp~s~~~R~~mvraaR~lLs~vtrlLilaD~vdV~~il~~~~~v~~~l~~~  137 (481)
                      .+-+-...|.++.-..|+.|..+|+.|.+||||+++|+.||+|||+||++||||||+||+++|++|+.++++|+++|+++
T Consensus         4 ~lk~em~~A~~~v~~ag~~l~~aa~~~~~dp~s~~~R~~lv~aaR~lLs~vt~lLllaD~~~Vr~il~~~~~v~~~l~~l   83 (181)
T d1dova_           4 FLKEELVVAVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMADVYKLLVQLKVVEDGILKL   83 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhhhHHHHHHHHhhccCCCCccchhhhhhhhhhhhhhHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q psy5464         138 KNASSQGELLDNIKAFGRNATELMAQAAKHGAEGSSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAAR  217 (481)
Q Consensus       138 ~~~~s~~el~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Rq~dLkd~~~r~~l~aar  217 (481)
                      ++++|++||+++|++||                                 ++|.+|++++++||+|||||.+|++|++||
T Consensus        84 e~v~s~~el~~~~~~f~---------------------------------~~~~~L~~~~~~Rq~dL~d~~~R~~l~~ar  130 (181)
T d1dova_          84 RNAGNEQDLGIQYKALK---------------------------------PEVDKLNIMAAKRQQELKDVGNRDQMAAAR  130 (181)
T ss_dssp             HTCCSHHHHHHHHHHHH---------------------------------HHHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH---------------------------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99999999999999999                                 999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHhhhhhhcCCCcHHHHHHHHhhHhhh-----hHhHhhcc
Q psy5464         218 AILKKHSTMLLTASKVYVRHPELAAAKENRNFVLGTT-----GFFTLAVT  262 (481)
Q Consensus       218 ~~Lkk~~~mL~ta~k~~~rhp~~~~a~~nR~~v~~~~-----~i~~~~~~  262 (481)
                      ++||+++|||+||||+|+|||++++|++||||||++|     .|.+++|.
T Consensus       131 ~~Lk~~~p~L~ts~k~~lrhp~~~~a~~nRd~v~~~m~~al~~I~~~~Q~  180 (181)
T d1dova_         131 GILQKNVPILYTASQACLQHPDVAAYKANRDLIYKQLQQAVTGISNAAQA  180 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhHHHHHHHHHHHcCCCcHHHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999     45566653
>d1t01a2 a.24.9.1 (A:126-252) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1t01a1 a.24.9.1 (A:1-125) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1h6ga1 a.24.9.1 (A:377-507) alpha-catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1u89a1 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1h6ga1 a.24.9.1 (A:377-507) alpha-catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b0ha1 a.24.9.2 (A:1838-1973) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1st6a6 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1u89a1 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2b0ha1 a.24.9.2 (A:1838-1973) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure