Psyllid ID: psy5474

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MVSTTVQTILDNLTSPDNWTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMAEMM
Secondary Structure (PSIPRED)
cccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHccccccccHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHccc
Coil and Loop (DISEMBL)
MVSTTVQTILdnltspdnwtlAIGAAENASllnltnssfvpkingfddgpqfpayirtpsMVLCSIILCIGVLGNIMVPCVIlkskdmrnsTNIFLMNLSIADLMVLLVCTPTVlvevnskpetwqMGEHMWKMAEMM
Flexible Loop (DISEMBL)
MVSTTVQTILdnltspdnWTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVlvevnskpetwqmgehMWKMAEMM
Low Complexity Region (SEG)
MVSTTVQTILDNLTSPDNWTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMAEMM
Disordered region (IsUnstruct)
*******TILDNLTSPDNWTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQ************
Disordered Region (DISOPRED)
***TTVQTILDNLTSPDNWTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMAEMM
Disordered Region (DISEMBL)
MVSTTVQTILDNLTSPDNWTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMAEMM
Disordered Region (DISPRO)
*VSTTVQTILDNLTSPDNWTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMAEMM
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVSTTVQTILDNLTSPDNWTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMAEMM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
Q04573	382	Neuropeptide Y receptor t	yes	N/A	0.789	0.285	0.336	2e-09
P21555	382	Neuropeptide Y receptor t	yes	N/A	0.789	0.285	0.319	6e-09
Q1RMU8	383	Neuropeptide Y receptor t	yes	N/A	0.782	0.281	0.353	3e-08
P25929	384	Neuropeptide Y receptor t	yes	N/A	0.702	0.252	0.354	4e-08
O02813	382	Neuropeptide Y receptor t	yes	N/A	0.768	0.277	0.358	4e-08
O02835	383	Neuropeptide Y receptor t	yes	N/A	0.811	0.292	0.352	5e-08
Q9WVD0	383	Neuropeptide Y receptor t	yes	N/A	0.782	0.281	0.353	6e-08
P83861	433	Pyroglutamylated RFamide	no	N/A	0.811	0.258	0.294	1e-07
P83858	433	Pyroglutamylated RFamide	no	N/A	0.811	0.258	0.294	1e-07
P58308	460	Orexin receptor type 2 OS	no	N/A	0.833	0.25	0.304	1e-07

>sp|Q04573|NPY1R_MOUSE Neuropeptide Y receptor type 1 OS=Mus musculus GN=Npy1r PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 13/122 (10%)

Query: 13  LTSPDNWTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGV 72
            +  +N ++   A+EN+ LL   N          DD     A I T ++   ++I+ +GV
Sbjct: 6   FSKVENHSIHYNASENSPLLAFEN----------DDCHLPLAVIFTLALAYGAVII-LGV 54

Query: 73  LGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMW 132
            GN+ +  +ILK K+MRN TNI ++NLS +DL+V ++C P   V   +  + W  GE M 
Sbjct: 55  SGNLALIIIILKQKEMRNVTNILIVNLSFSDLLVAVMCLPFTFVY--TLMDHWVFGETMC 112

Query: 133 KM 134
           K+
Sbjct: 113 KL 114

Receptor for neuropeptide Y and peptide YY.
Mus musculus (taxid: 10090)

>sp|P21555|NPY1R_RAT Neuropeptide Y receptor type 1 OS=Rattus norvegicus GN=Npy1r PE=2 SV=3

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 13/122 (10%)

Query: 13  LTSPDNWTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGV 72
            +  +N+++    +EN+  L   N          DD     A I T ++   ++I+ +GV
Sbjct: 6   FSRVENYSVHYNVSENSPFLAFEN----------DDCHLPLAVIFTLALAYGAVII-LGV 54

Query: 73  LGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMW 132
            GN+ +  +ILK K+MRN TNI ++NLS +DL+V ++C P   V   +  + W  GE M 
Sbjct: 55  SGNLALIIIILKQKEMRNVTNILIVNLSFSDLLVAVMCLPFTFVY--TLMDHWVFGETMC 112

Query: 133 KM 134
           K+
Sbjct: 113 KL 114

Receptor for neuropeptide Y and peptide YY.

Rattus norvegicus (taxid: 10116)

>sp|Q1RMU8|NPY1R_BOVIN Neuropeptide Y receptor type 1 OS=Bos taurus GN=NPY1R PE=2 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 8/116 (6%)

Query: 22  AIGAAENASL---LNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMV 78
           +    EN S+    +  NS F+   N  DD     A I T ++   ++I+ +GV GN+ +
Sbjct: 5   SFSQVENHSIYYNFSEKNSRFLAFEN--DDCHLPLAMIFTLALAYGAVII-LGVSGNLAL 61

Query: 79  PCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKM 134
             +ILK K+MRN TNI ++NLS +DL+V ++C P   V   +  + W  GE M K+
Sbjct: 62  IIIILKQKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVY--TLMDHWVFGEAMCKL 115

Receptor for neuropeptide Y and peptide YY.

Bos taurus (taxid: 9913)

>sp|P25929|NPY1R_HUMAN Neuropeptide Y receptor type 1 OS=Homo sapiens GN=NPY1R PE=2 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 13/110 (11%)

Query: 25  AAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILK 84
           + +NA LL   N          DD     A I T ++   ++I+ +GV GN+ +  +ILK
Sbjct: 19  SEKNAQLLAFEN----------DDCHLPLAMIFTLALAYGAVII-LGVSGNLALIIIILK 67

Query: 85  SKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKM 134
            K+MRN TNI ++NLS +DL+V ++C P   V   +  + W  GE M K+
Sbjct: 68  QKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVY--TLMDHWVFGEAMCKL 115

Receptor for neuropeptide Y and peptide YY. The rank order of affinity of this receptor for pancreatic polypeptides is NPY > [Pro-34] PYY, PYY and [Leu-31, Pro-34] NPY > NPY (2-36) > [Ile-31, Gln-34] PP and PYY (3-36) > PP > NPY free acid.

Homo sapiens (taxid: 9606)

>sp|O02813|NPY1R_CANFA Neuropeptide Y receptor type 1 OS=Canis familiaris GN=NPY1R PE=2 SV=2

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 11/117 (9%)

Query: 22  AIGAAENASLL-NLT-NSSFVPKINGFD-DGPQFP-AYIRTPSMVLCSIILCIGVLGNIM 77
           +    EN S+  N + NS F+     F+ D    P A I T ++   ++I+ +GV GN+ 
Sbjct: 5   SFSQVENHSIFCNFSENSQFL----AFESDDCHLPLAMIFTLALAYGAVII-LGVTGNLA 59

Query: 78  VPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKM 134
           +  +ILK K+MRN TNI ++NLS +DL+V ++C P   V   +  + W  GE M K+
Sbjct: 60  LIMIILKQKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVY--TLMDHWVFGEAMCKL 114

Receptor for neuropeptide Y and peptide YY.

Canis familiaris (taxid: 9615)

>sp|O02835|NPY1R_PIG Neuropeptide Y receptor type 1 OS=Sus scrofa GN=NPY1R PE=2 SV=2

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 7/119 (5%)

Query: 18  NWTLAIGAAENASLLNLT--NSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGN 75
           N TL+     ++   N +  NS F+   N  DD     A I T ++   ++I+ +GV GN
Sbjct: 2   NSTLSSQVENHSIYYNFSEKNSQFLAFEN--DDCHLPLAMIFTLALAYGAVII-LGVSGN 58

Query: 76  IMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKM 134
           + +  +ILK K+MRN TNI ++NLS +DL+V ++C P   V   +  + W  GE M K+
Sbjct: 59  LALIIIILKQKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVY--TLMDHWVFGEVMCKL 115

Receptor for neuropeptide Y and peptide YY.

Sus scrofa (taxid: 9823)

>sp|Q9WVD0|NPY1R_CAVPO Neuropeptide Y receptor type 1 OS=Cavia porcellus GN=NPY1R PE=3 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 8/116 (6%)

Query: 22  AIGAAENASL-LNLTNSSFVPKINGFD-DGPQFP-AYIRTPSMVLCSIILCIGVLGNIMV 78
           +    EN S+  NL+     P    F+ D    P A I T ++   ++I+ +GV GN+ +
Sbjct: 5   SFSQLENHSVHYNLSEEK--PSFFAFENDDCHLPLAVIFTLALAYGAVII-LGVSGNLAL 61

Query: 79  PCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKM 134
             +ILK K+MRN TNI ++NLS +DL+V ++C P   V   +  + W  GE M K+
Sbjct: 62  ILIILKQKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVY--TLMDHWIFGEIMCKL 115

Receptor for neuropeptide Y and peptide YY.

Cavia porcellus (taxid: 10141)

>sp|P83861|QRFPR_MOUSE Pyroglutamylated RFamide peptide receptor OS=Mus musculus GN=Qrfpr PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 7/119 (5%)

Query: 21  LAIGAAENASLL---NLTNSSFVPK--INGFDDGPQFPAYIRTPSMVLCSIILCIGVLGN 75
           L I A + + LL   NLT   F+ +  +      P+ PA  +    +  ++I  + + GN
Sbjct: 4   LNITAEQFSRLLSAHNLTREQFIHRYGLRPLVYTPELPARAKLAFALAGALIFALALFGN 63

Query: 76  IMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKM 134
            +V  V+ +SK MR  TNIF+ +L+++DL++   C P  +++  S  + W  G  + KM
Sbjct: 64  SLVIYVVTRSKAMRTVTNIFICSLALSDLLIAFFCIPVTMLQNIS--DKWLGGAFICKM 120

Receptor for the orexigenic neuropeptide QRFP. The activity of this receptor is mediated by G proteins that modulate adenylate cyclase activity and intracellular calcium levels.

Mus musculus (taxid: 10090)

>sp|P83858|QRFPR_RAT Pyroglutamylated RFamide peptide receptor OS=Rattus norvegicus GN=Qrfpr PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 7/119 (5%)

Query: 21  LAIGAAENASLL---NLTNSSFVPK--INGFDDGPQFPAYIRTPSMVLCSIILCIGVLGN 75
           L I A + + LL   NLT   F+ +  +      P+ PA  +    +  ++I  + + GN
Sbjct: 4   LNITAEQFSRLLSAHNLTREQFIHRYGLRPLVYTPELPARAKVAFALAGALIFALALFGN 63

Query: 76  IMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKM 134
            +V  V+ +SK MR  TNIF+ +L+++DL++   C P  +++  S  + W  G  + KM
Sbjct: 64  SLVIYVVTRSKAMRTVTNIFICSLALSDLLIAFFCIPVTMLQNIS--DKWLGGAFICKM 120

Receptor for the orexigenic neuropeptide QRFP. The activity of this receptor is mediated by G proteins that modulate adenylate cyclase activity and intracellular calcium levels.

Rattus norvegicus (taxid: 10116)

>sp|P58308|OX2R_MOUSE Orexin receptor type 2 OS=Mus musculus GN=Hcrtr2 PE=2 SV=2

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 23/138 (16%)

Query: 8   TILDNLTSPDNWTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYI-------RTPS 60
           T L++  S  NW+       +AS LN T   F+   + +DD  +F  Y+       +   
Sbjct: 4   TKLEDSLSRRNWS-------SASELNETQEPFLNPTD-YDD-EEFLRYLWREYLHPKEYE 54

Query: 61  MVLCS---IILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTP-TVLV 116
            VL +   I+  + ++GN++V   + K+  MR  TN F++NLS+AD++V + C P T++V
Sbjct: 55  WVLIAGYIIVFVVALIGNVLVCVAVWKNHHMRTVTNYFIVNLSLADVLVTITCLPATLVV 114

Query: 117 EVNSKPETWQMGEHMWKM 134
           ++    ETW  G+ + K+
Sbjct: 115 DIT---ETWFFGQSLCKV 129

Nonselective, high-affinity receptor for both orexin-A and orexin-B neuropeptides.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
347968737	832	AGAP002881-PB [Anopheles gambiae str. PE	0.666	0.110	0.706	3e-31
134031934	434	ecdysis triggering hormone receptor isof	0.753	0.239	0.657	3e-31
134031970	451	ecdysis triggering hormone receptor isof	0.753	0.230	0.657	3e-31
270014299	461	hypothetical protein TcasGA2_TC012493 [T	0.753	0.225	0.657	4e-31
347968739	762	AGAP002881-PA [Anopheles gambiae str. PE	0.666	0.120	0.706	4e-31
60328185	558	ecdysis triggering hormone receptor subt	0.717	0.177	0.656	6e-31
60328183	573	ecdysis triggering hormone receptor subt	0.717	0.172	0.656	8e-31
328714990	781	PREDICTED: hypothetical protein LOC10016	0.659	0.116	0.736	1e-30
170034662	332	conserved hypothetical protein [Culex qu	0.637	0.265	0.75	2e-30
115292720	586	ecdysis triggering hormone receptor subt	0.608	0.143	0.773	3e-30

>gi|347968737|ref|XP_003436278.1| AGAP002881-PB [Anopheles gambiae str. PEST] gi|333467866|gb|EGK96735.1| AGAP002881-PB [Anopheles gambiae str. PEST]

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/92 (70%), Positives = 73/92 (79%)

Query: 44  NGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIAD 103
           N   + PQ P YIR  SMV C II+C+GV+GN+MVP VILK+KDMRNSTNIFL NLSIAD
Sbjct: 221 NDSSEMPQIPEYIRATSMVFCIIIMCLGVIGNVMVPIVILKTKDMRNSTNIFLTNLSIAD 280

Query: 104 LMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA 135
           L+VLLVCTPTVLVEVNS PE W +GE M   A
Sbjct: 281 LLVLLVCTPTVLVEVNSPPEVWVLGEEMCNRA 312

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|134031934|ref|NP_001076792.1| ecdysis triggering hormone receptor isoform A [Tribolium castaneum] gi|126116542|gb|ABN79653.1| ecdysis triggering hormone receptor isoform A [Tribolium castaneum]

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/105 (65%), Positives = 82/105 (78%), Gaps = 1/105 (0%)

Query: 29  ASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDM 88
           +S ++L N+S V   N       FP YIRT SMV C II+C+GV+GN+MVP VI K+KDM
Sbjct: 41  SSTIDLYNTSSVSNFNE-SSSSVFPNYIRTTSMVFCIIIMCLGVIGNVMVPIVIFKTKDM 99

Query: 89  RNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWK 133
           RNSTNIFL+NLS+ADLMVLLVCTPTVLVEVNS+PETW +G  M K
Sbjct: 100 RNSTNIFLVNLSVADLMVLLVCTPTVLVEVNSRPETWVLGREMCK 144

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|134031970|ref|NP_001076793.1| ecdysis triggering hormone receptor isoform B [Tribolium castaneum] gi|126116544|gb|ABN79654.1| ecdysis triggering hormone receptor isoform B [Tribolium castaneum]

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/105 (65%), Positives = 82/105 (78%), Gaps = 1/105 (0%)

Query: 29  ASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDM 88
           +S ++L N+S V   N       FP YIRT SMV C II+C+GV+GN+MVP VI K+KDM
Sbjct: 41  SSTIDLYNTSSVSNFNE-SSSSVFPNYIRTTSMVFCIIIMCLGVIGNVMVPIVIFKTKDM 99

Query: 89  RNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWK 133
           RNSTNIFL+NLS+ADLMVLLVCTPTVLVEVNS+PETW +G  M K
Sbjct: 100 RNSTNIFLVNLSVADLMVLLVCTPTVLVEVNSRPETWVLGREMCK 144

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014299|gb|EFA10747.1| hypothetical protein TcasGA2_TC012493 [Tribolium castaneum]

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/105 (65%), Positives = 82/105 (78%), Gaps = 1/105 (0%)

Query: 29  ASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDM 88
           +S ++L N+S V   N       FP YIRT SMV C II+C+GV+GN+MVP VI K+KDM
Sbjct: 68  SSTIDLYNTSSVSNFNE-SSSSVFPNYIRTTSMVFCIIIMCLGVIGNVMVPIVIFKTKDM 126

Query: 89  RNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWK 133
           RNSTNIFL+NLS+ADLMVLLVCTPTVLVEVNS+PETW +G  M K
Sbjct: 127 RNSTNIFLVNLSVADLMVLLVCTPTVLVEVNSRPETWVLGREMCK 171

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347968739|ref|XP_312031.5| AGAP002881-PA [Anopheles gambiae str. PEST] gi|333467865|gb|EAA08029.6| AGAP002881-PA [Anopheles gambiae str. PEST]

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 65/92 (70%), Positives = 73/92 (79%)

Query: 44  NGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIAD 103
           N   + PQ P YIR  SMV C II+C+GV+GN+MVP VILK+KDMRNSTNIFL NLSIAD
Sbjct: 221 NDSSEMPQIPEYIRATSMVFCIIIMCLGVIGNVMVPIVILKTKDMRNSTNIFLTNLSIAD 280

Query: 104 LMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA 135
           L+VLLVCTPTVLVEVNS PE W +GE M   A
Sbjct: 281 LLVLLVCTPTVLVEVNSPPEVWVLGEEMCNRA 312

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|60328185|gb|AAX19164.1| ecdysis triggering hormone receptor subtype-B [Manduca sexta]

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 81/99 (81%)

Query: 33  NLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNST 92
           NLT+S+F    + F +  + P YI+  SM  C +I+C+GV+GN+MVP VILK+KDMRNST
Sbjct: 71  NLTDSAFEMPNDNFTEYAEVPYYIKATSMTFCIVIMCLGVIGNVMVPIVILKTKDMRNST 130

Query: 93  NIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHM 131
           NIFL+NLSIADLMVLLVCTPTVLVEVNSKPETW +G+ +
Sbjct: 131 NIFLVNLSIADLMVLLVCTPTVLVEVNSKPETWVLGKEL 169

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|60328183|gb|AAX19163.1| ecdysis triggering hormone receptor subtype-A [Manduca sexta]

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 81/99 (81%)

Query: 33  NLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNST 92
           NLT+S+F    + F +  + P YI+  SM  C +I+C+GV+GN+MVP VILK+KDMRNST
Sbjct: 71  NLTDSAFEMPNDNFTEYAEVPYYIKATSMTFCIVIMCLGVIGNVMVPIVILKTKDMRNST 130

Query: 93  NIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHM 131
           NIFL+NLSIADLMVLLVCTPTVLVEVNSKPETW +G+ +
Sbjct: 131 NIFLVNLSIADLMVLLVCTPTVLVEVNSKPETWVLGKEL 169

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328714990|ref|XP_001944756.2| PREDICTED: hypothetical protein LOC100169111 [Acyrthosiphon pisum]

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/91 (73%), Positives = 75/91 (82%)

Query: 43  INGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIA 102
           I   DD   FP YIRT  MV+C IIL +GV+GN+MVP VILKSKDMRNSTNIFLMNLSIA
Sbjct: 41  IQFLDDDLSFPGYIRTTCMVVCVIILGVGVVGNMMVPIVILKSKDMRNSTNIFLMNLSIA 100

Query: 103 DLMVLLVCTPTVLVEVNSKPETWQMGEHMWK 133
           DLMVLL+CTPTV VEVNS+PETW +GE + K
Sbjct: 101 DLMVLLICTPTVFVEVNSRPETWVLGEELCK 131

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170034662|ref|XP_001845192.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167876063|gb|EDS39446.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/88 (75%), Positives = 73/88 (82%)

Query: 46  FDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLM 105
            +D PQ P YIR  SMV C II+C+GV+GNIMVP VILK+KDMRNSTNIFL NLSIADL+
Sbjct: 137 LNDMPQIPEYIRATSMVFCIIIMCLGVIGNIMVPIVILKTKDMRNSTNIFLTNLSIADLL 196

Query: 106 VLLVCTPTVLVEVNSKPETWQMGEHMWK 133
           VLLVCTPTVLVEVNS PE W +GE M K
Sbjct: 197 VLLVCTPTVLVEVNSPPEVWVLGEEMCK 224

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|115292720|gb|ABI93274.1| ecdysis triggering hormone receptor subtype B [Aedes aegypti]

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/84 (77%), Positives = 71/84 (84%)

Query: 50  PQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLV 109
           PQ P YIR  SMV C II+C+GV+GNIMVP VILK+KDMRNSTNIFL NLSIADL+VLLV
Sbjct: 2   PQIPEYIRATSMVFCIIIMCLGVIGNIMVPIVILKTKDMRNSTNIFLTNLSIADLLVLLV 61

Query: 110 CTPTVLVEVNSKPETWQMGEHMWK 133
           CTPTVLVEVNS PE W +GE M K
Sbjct: 62  CTPTVLVEVNSPPEVWVLGEEMCK 85

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
FB|FBgn0038874	471	ETHR "ETHR" [Drosophila melano	0.608	0.178	0.702	7.5e-29
ZFIN|ZDB-GENE-980526-208	375	npy8br "neuropeptide Y recepto	0.681	0.250	0.346	1.4e-10
ZFIN|ZDB-GENE-090327-1	365	ghsrb "growth hormone secretag	0.608	0.230	0.340	3.5e-10
RGD|1560028	415	RGD1560028 "similar to RIKEN c	0.818	0.272	0.311	3.6e-10
UNIPROTKB|O02813	382	NPY1R "Neuropeptide Y receptor	0.731	0.264	0.375	6.5e-10
MGI|MGI:104963	382	Npy1r "neuropeptide Y receptor	0.804	0.290	0.361	6.5e-10
RGD|3198	382	Npy1r "neuropeptide Y receptor	0.804	0.290	0.361	6.5e-10
UNIPROTKB|G3V7T1	382	Npy1r "Neuropeptide Y receptor	0.804	0.290	0.361	6.5e-10
UNIPROTKB|O02835	383	NPY1R "Neuropeptide Y receptor	0.797	0.287	0.371	6.5e-10
UNIPROTKB|Q8QFM1	385	NPY1R "Uncharacterized protein	0.739	0.264	0.357	8.4e-10

FB|FBgn0038874 ETHR "ETHR" [Drosophila melanogaster (taxid:7227)]

 Score = 321 (118.1 bits), Expect = 7.5e-29, P = 7.5e-29
 Identities = 59/84 (70%), Positives = 72/84 (85%)

Query:    50 PQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLV 109
             PQ P+YIRT +M  C +I+ +GV+GN+MVP VI+K+KDMRNSTNIFL NLSIADL+VLLV
Sbjct:     3 PQIPSYIRTTAMFFCIVIMLLGVVGNVMVPIVIVKTKDMRNSTNIFLTNLSIADLLVLLV 62

Query:   110 CTPTVLVEVNSKPETWQMGEHMWK 133
             CTPTVLVEVN++PETW +G  M K
Sbjct:    63 CTPTVLVEVNTRPETWVLGHEMCK 86

GO:0008528 "G-protein coupled peptide receptor activity" evidence=ISS;NAS

GO:0016021 "integral to membrane" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS;NAS

GO:0008188 "neuropeptide receptor activity" evidence=ISS

GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS

GO:0042654 "ecdysis-triggering hormone receptor activity" evidence=NAS;IDA

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-980526-208 npy8br "neuropeptide Y receptor Y8b" [Danio rerio (taxid:7955)]

 Score = 155 (59.6 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 36/104 (34%), Positives = 64/104 (61%)

Query:    33 NLTNSSFVPKINGFDDGPQFPAYIRTPSMVLC--SIILCIGVLGNIMVPCVILKSKDMRN 90
             +L NSS++      +D P  PA + + + ++   S +L +G++GN  +  VI + K+MRN
Sbjct:     5 HLNNSSWL-----LED-PTCPASLSSTTFLIVAYSTMLAVGLVGNTCLVVVITRQKEMRN 58

Query:    91 STNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKM 134
              TNIF++NLS +D++V LVC P  ++   +  + W +GE + K+
Sbjct:    59 VTNIFIVNLSCSDILVCLVCLPVTIIY--TLMDRWILGEALCKV 100

GO:0004983 "neuropeptide Y receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

ZFIN|ZDB-GENE-090327-1 ghsrb "growth hormone secretagogue receptor b" [Danio rerio (taxid:7955)]

 Score = 151 (58.2 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 30/88 (34%), Positives = 52/88 (59%)

Query:    52 FPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCT 111
             FP  I T   V CS +  +G+ GN++   V+ K KDMR +TN++L +++++DL++ L C 
Sbjct:    37 FPVPILTGITVTCSFLFLVGIAGNLLTILVVTKYKDMRTTTNLYLCSMALSDLLIFL-CM 95

Query:   112 PTVLVEV-NSKPETWQMGEHMWKMAEMM 138
             P  L  V   +P  W  G+ + K+ + +
Sbjct:    96 PLDLYRVWRYRP--WNFGDELCKLFQFV 121

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016520 "growth hormone-releasing hormone receptor activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

RGD|1560028 RGD1560028 "similar to RIKEN cDNA C130060K24 gene" [Rattus norvegicus (taxid:10116)]

 Score = 152 (58.6 bits), Expect = 3.6e-10, P = 3.6e-10
 Identities = 38/122 (31%), Positives = 67/122 (54%)

Query:    18 NWTLAIGAAENASLL---NLTNSSFVPK--INGFDDGPQFPAYIRTPSMVLCSIILCIGV 72
             +W L   A + ++LL   NLT + F+ +  +      PQ PA  R   ++   +I  + +
Sbjct:     2 SWNLT--AEQLSALLQLHNLTRAQFIARYGLRPLVLTPQLPARARLALLLAGLLIFALAL 59

Query:    73 LGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMW 132
              GN +V  V+ +SK MR  TNIF+ +L+++DL+++  C P  +++  S  +TW  G  + 
Sbjct:    60 FGNALVVYVVTRSKAMRTVTNIFICSLALSDLLIVFFCIPVTMLQNVS--DTWLGGAFIC 117

Query:   133 KM 134
             KM
Sbjct:   118 KM 119

GO:0004983 "neuropeptide Y receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O02813 NPY1R "Neuropeptide Y receptor type 1" [Canis lupus familiaris (taxid:9615)]

 Score = 149 (57.5 bits), Expect = 6.5e-10, P = 6.5e-10
 Identities = 42/112 (37%), Positives = 65/112 (58%)

Query:    27 ENASLL-NLT-NSSFVPKINGFD-DGPQFP-AYIRTPSMVLCSIILCIGVLGNIMVPCVI 82
             EN S+  N + NS F+     F+ D    P A I T ++   ++I+ +GV GN+ +  +I
Sbjct:    10 ENHSIFCNFSENSQFL----AFESDDCHLPLAMIFTLALAYGAVII-LGVTGNLALIMII 64

Query:    83 LKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKM 134
             LK K+MRN TNI ++NLS +DL+V ++C P   V   +  + W  GE M K+
Sbjct:    65 LKQKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVY--TLMDHWVFGEAMCKL 114

GO:0005886 "plasma membrane" evidence=IEA

GO:0040014 "regulation of multicellular organism growth" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IEA

GO:0008217 "regulation of blood pressure" evidence=IEA

GO:0007631 "feeding behavior" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0003151 "outflow tract morphogenesis" evidence=IEA

GO:0001602 "pancreatic polypeptide receptor activity" evidence=IEA

GO:0001601 "peptide YY receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:104963 Npy1r "neuropeptide Y receptor Y1" [Mus musculus (taxid:10090)]

 Score = 149 (57.5 bits), Expect = 6.5e-10, P = 6.5e-10
 Identities = 43/119 (36%), Positives = 67/119 (56%)

Query:    18 NWTLAIGAAENASL-LNLTNSSFVPKINGFDDGPQFP-AYIRTPSMVLCSIILCIGVLGN 75
             N TL     EN S+  N + +S  P +   +D    P A I T ++   ++I+ +GV GN
Sbjct:     2 NSTL-FSKVENHSIHYNASENS--PLLAFENDDCHLPLAVIFTLALAYGAVII-LGVSGN 57

Query:    76 IMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKM 134
             + +  +ILK K+MRN TNI ++NLS +DL+V ++C P   V   +  + W  GE M K+
Sbjct:    58 LALIIIILKQKEMRNVTNILIVNLSFSDLLVAVMCLPFTFVY--TLMDHWVFGETMCKL 114

GO:0001601 "peptide YY receptor activity" evidence=IDA

GO:0001602 "pancreatic polypeptide receptor activity" evidence=IDA

GO:0003151 "outflow tract morphogenesis" evidence=ISO

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0004983 "neuropeptide Y receptor activity" evidence=IDA

GO:0005829 "cytosol" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006006 "glucose metabolic process" evidence=IMP

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IDA

GO:0007268 "synaptic transmission" evidence=IDA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0007631 "feeding behavior" evidence=IMP

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0008217 "regulation of blood pressure" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=ISO;IMP

GO:0030424 "axon" evidence=ISO

GO:0030432 "peristalsis" evidence=ISO

GO:0040014 "regulation of multicellular organism growth" evidence=IMP

GO:0045907 "positive regulation of vasoconstriction" evidence=ISO

GO:0046888 "negative regulation of hormone secretion" evidence=ISO

GO:0051481 "reduction of cytosolic calcium ion concentration" evidence=ISO

RGD|3198 Npy1r "neuropeptide Y receptor Y1" [Rattus norvegicus (taxid:10116)]

 Score = 149 (57.5 bits), Expect = 6.5e-10, P = 6.5e-10
 Identities = 43/119 (36%), Positives = 68/119 (57%)

Query:    18 NWTLAIGAAENASL-LNLTNSSFVPKINGFDDGPQFP-AYIRTPSMVLCSIILCIGVLGN 75
             N TL     EN S+  N++ +S  P +   +D    P A I T ++   ++I+ +GV GN
Sbjct:     2 NSTL-FSRVENYSVHYNVSENS--PFLAFENDDCHLPLAVIFTLALAYGAVII-LGVSGN 57

Query:    76 IMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKM 134
             + +  +ILK K+MRN TNI ++NLS +DL+V ++C P   V   +  + W  GE M K+
Sbjct:    58 LALIIIILKQKEMRNVTNILIVNLSFSDLLVAVMCLPFTFVY--TLMDHWVFGETMCKL 114

GO:0001601 "peptide YY receptor activity" evidence=IEA;ISO

GO:0001602 "pancreatic polypeptide receptor activity" evidence=IEA;ISO

GO:0003151 "outflow tract morphogenesis" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0004983 "neuropeptide Y receptor activity" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006006 "glucose metabolic process" evidence=IEA;ISO

GO:0007218 "neuropeptide signaling pathway" evidence=ISO

GO:0007268 "synaptic transmission" evidence=ISO

GO:0007626 "locomotory behavior" evidence=IEA;ISO

GO:0007631 "feeding behavior" evidence=IEA;ISO

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0008217 "regulation of blood pressure" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IEA;ISO;IMP

GO:0030424 "axon" evidence=IDA

GO:0030432 "peristalsis" evidence=IMP

GO:0032355 "response to estradiol stimulus" evidence=IEP

GO:0040014 "regulation of multicellular organism growth" evidence=IEA;ISO

GO:0045907 "positive regulation of vasoconstriction" evidence=IMP

GO:0046888 "negative regulation of hormone secretion" evidence=IMP

GO:0051481 "reduction of cytosolic calcium ion concentration" evidence=IMP

UNIPROTKB|G3V7T1 Npy1r "Neuropeptide Y receptor type 1" [Rattus norvegicus (taxid:10116)]

 Score = 149 (57.5 bits), Expect = 6.5e-10, P = 6.5e-10
 Identities = 43/119 (36%), Positives = 68/119 (57%)

Query:    18 NWTLAIGAAENASL-LNLTNSSFVPKINGFDDGPQFP-AYIRTPSMVLCSIILCIGVLGN 75
             N TL     EN S+  N++ +S  P +   +D    P A I T ++   ++I+ +GV GN
Sbjct:     2 NSTL-FSRVENYSVHYNVSENS--PFLAFENDDCHLPLAVIFTLALAYGAVII-LGVSGN 57

Query:    76 IMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKM 134
             + +  +ILK K+MRN TNI ++NLS +DL+V ++C P   V   +  + W  GE M K+
Sbjct:    58 LALIIIILKQKEMRNVTNILIVNLSFSDLLVAVMCLPFTFVY--TLMDHWVFGETMCKL 114

GO:0001601 "peptide YY receptor activity" evidence=IEA

GO:0001602 "pancreatic polypeptide receptor activity" evidence=IEA

GO:0003151 "outflow tract morphogenesis" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0007631 "feeding behavior" evidence=IEA

GO:0008217 "regulation of blood pressure" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IEA

GO:0040014 "regulation of multicellular organism growth" evidence=IEA

UNIPROTKB|O02835 NPY1R "Neuropeptide Y receptor type 1" [Sus scrofa (taxid:9823)]

 Score = 149 (57.5 bits), Expect = 6.5e-10, P = 6.5e-10
 Identities = 45/121 (37%), Positives = 68/121 (56%)

Query:    18 NWTLAIGAAENASLL-NLT--NSSFVPKINGFDDGPQFP-AYIRTPSMVLCSIILCIGVL 73
             N TL+    EN S+  N +  NS F+   N   D    P A I T ++   ++I+ +GV 
Sbjct:     2 NSTLS-SQVENHSIYYNFSEKNSQFLAFEN---DDCHLPLAMIFTLALAYGAVII-LGVS 56

Query:    74 GNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWK 133
             GN+ +  +ILK K+MRN TNI ++NLS +DL+V ++C P   V   +  + W  GE M K
Sbjct:    57 GNLALIIIILKQKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVY--TLMDHWVFGEVMCK 114

Query:   134 M 134
             +
Sbjct:   115 L 115

GO:0005886 "plasma membrane" evidence=IEA

GO:0040014 "regulation of multicellular organism growth" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IEA

GO:0008217 "regulation of blood pressure" evidence=IEA

GO:0007631 "feeding behavior" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0003151 "outflow tract morphogenesis" evidence=IEA

GO:0001602 "pancreatic polypeptide receptor activity" evidence=IEA

GO:0001601 "peptide YY receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q8QFM1 NPY1R "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 148 (57.2 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 39/109 (35%), Positives = 64/109 (58%)

Query:    28 NASLLNLTNSSFVPKINGFDDGP-QFP-AYIRTPSMVLCSIILCIGVLGNIMVPCVILKS 85
             N+S LN +  +   +I  F+D     P A + T ++   ++I+ +GV GN+ +  +ILK 
Sbjct:    12 NSSHLNFSEKN--SQILQFEDEDCHVPLAMVFTLALAYGTVII-LGVSGNLALIVIILKQ 68

Query:    86 KDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKM 134
             K+MRN TNI ++NLS +DL+V ++C P   V   +  + W  GE M K+
Sbjct:    69 KEMRNVTNILIVNLSFSDLLVTIMCLPFTFVY--TLMDHWIFGEAMCKL 115

GO:0016021 "integral to membrane" evidence=IEA

GO:0001601 "peptide YY receptor activity" evidence=IEA

GO:0001602 "pancreatic polypeptide receptor activity" evidence=IEA

GO:0003151 "outflow tract morphogenesis" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0007631 "feeding behavior" evidence=IEA

GO:0008217 "regulation of blood pressure" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IEA

GO:0040014 "regulation of multicellular organism growth" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	138
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	1e-08

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 80  CVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWK 133
            VIL++K +R  TNIFL+NL++ADL+ LL   P  L         W  G+ + K
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWAL--YYLVGGDWPFGDALCK 52

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
KOG4219|consensus	423		99.73
PHA03234	338	DNA packaging protein UL33; Provisional	99.63
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.42
PHA02834	323	chemokine receptor-like protein; Provisional	99.4
KOG4220|consensus	503		99.35
PHA03235	409	DNA packaging protein UL33; Provisional	99.25
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.24
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	98.94
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	98.18
KOG2087|consensus	363		97.31
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	96.24
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	96.11
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	95.46
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	95.43
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	94.85
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	93.06
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	90.52
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	89.94

>KOG4219|consensus

Probab=99.73  E-value=6.9e-18  Score=129.22  Aligned_cols=88  Identities=25%  Similarity=0.432  Sum_probs=80.0

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Q psy5474          49 GPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMG  128 (138)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g  128 (138)
                      ....+.+.+.++.++|+++.+++++||.+|+|++..+|++|+.+|+||+|||+||++.++++.|+...+...  ..|.||
T Consensus        27 ~f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~--~~W~~G  104 (423)
T KOG4219|consen   27 LFVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALH--QEWYFG  104 (423)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--hccccc
Confidence            456666678889999999999999999999999999999999999999999999999999999998876644  589999


Q ss_pred             cccccccccC
Q psy5474         129 EHMWKMAEMM  138 (138)
Q Consensus       129 ~~~C~~~~~~  138 (138)
                      .++|++..|+
T Consensus       105 ~f~C~f~nf~  114 (423)
T KOG4219|consen  105 SFYCRFVNFF  114 (423)
T ss_pred             cceeeecccc
Confidence            9999999874

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.63  E-value=8e-16  Score=118.03  Aligned_cols=78  Identities=14%  Similarity=0.251  Sum_probs=65.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhHh--hcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccc
Q psy5474          56 IRTPSMVLCSIILCIGVLGNIMVPCVI--LKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWK  133 (138)
Q Consensus        56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i--~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~  133 (138)
                      .+..++++|.+++++|++||++|++++  .+++++|+++|+|+.|||+||++++++ +|+...+.   .+.|+||+.+||
T Consensus        31 ~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~-lp~~~~~~---~~~w~fG~~lCk  106 (338)
T PHA03234         31 AQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLC-VFFLTLNR---EALFNFNQAFCQ  106 (338)
T ss_pred             HHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHH-HHHHHHHH---hCCccCchhHHH
Confidence            566789999999999999999999844  456677999999999999999999765 67666533   347999999999


Q ss_pred             cccc
Q psy5474         134 MAEM  137 (138)
Q Consensus       134 ~~~~  137 (138)
                      +.++
T Consensus       107 ~~~~  110 (338)
T PHA03234        107 CVLF  110 (338)
T ss_pred             HHHH
Confidence            8765

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.42  E-value=1.7e-12  Score=102.22  Aligned_cols=77  Identities=25%  Similarity=0.551  Sum_probs=65.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy5474          56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA  135 (138)
Q Consensus        56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~  135 (138)
                      ....+.++|.+++++|++||++|++++. +|++|+++|+++.|||++|+++.. .+|+++.+.   .+.|.||+.+||+.
T Consensus        97 ~~~~l~~~y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~~l-~lPf~i~~~---~~~W~fg~~~Ck~~  171 (417)
T PHA02638         97 ISEYIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIFVI-DFPFIIYNE---FDQWIFGDFMCKVI  171 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHHHH-HHHHHHHHH---hccccccccchhhH
Confidence            4457788999999999999999998765 478899999999999999999764 689987644   25799999999986


Q ss_pred             cc
Q psy5474         136 EM  137 (138)
Q Consensus       136 ~~  137 (138)
                      .+
T Consensus       172 ~~  173 (417)
T PHA02638        172 SA  173 (417)
T ss_pred             HH
Confidence            53

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.40  E-value=9.3e-13  Score=100.35  Aligned_cols=77  Identities=22%  Similarity=0.491  Sum_probs=63.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy5474          56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA  135 (138)
Q Consensus        56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~  135 (138)
                      .+.++.+++.+++++|++||+++++++.++|+ ++++|+|+.|||++|++. ...+|+.+...   .+.|.+|+..||+.
T Consensus        27 ~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~---~~~w~~g~~~C~~~  101 (323)
T PHA02834         27 VNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHND---LNEWIFGEFMCKLV  101 (323)
T ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHH---cCCcCCcchHHHhH
Confidence            45678899999999999999999998877665 457899999999999986 55789876543   24699999999986


Q ss_pred             cc
Q psy5474         136 EM  137 (138)
Q Consensus       136 ~~  137 (138)
                      ++
T Consensus       102 ~~  103 (323)
T PHA02834        102 LG  103 (323)
T ss_pred             HH
Confidence            54

>KOG4220|consensus

Probab=99.35  E-value=1.1e-13  Score=106.71  Aligned_cols=77  Identities=18%  Similarity=0.273  Sum_probs=70.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy5474          57 RTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA  135 (138)
Q Consensus        57 ~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~  135 (138)
                      ...+.++-.++.++.++||++|++.+..+|+||+..|||+++||+|||+.+.+.+|+...|...  +.|++|..+|.+.
T Consensus        30 ~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lm--g~W~LG~~~CdlW  106 (503)
T KOG4220|consen   30 VVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLM--GYWPLGPLVCDLW  106 (503)
T ss_pred             EEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHH--cccccchHHHHHH
Confidence            3456778889999999999999999999999999999999999999999999999999987754  6999999999875

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.25  E-value=2.8e-11  Score=95.15  Aligned_cols=78  Identities=18%  Similarity=0.299  Sum_probs=59.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccc
Q psy5474          56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDM--RNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWK  133 (138)
Q Consensus        56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l--~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~  133 (138)
                      .+....+++.+++++|++||++|++++.++++.  ++..++|+.|||++|++. ++.+|+.+..   ....|.+|+..||
T Consensus        31 ~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~---~~~~~~~g~~~Ck  106 (409)
T PHA03235         31 ARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLS---NQGLLSGSVAGCK  106 (409)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHh---cCccccCCCCeeh
Confidence            556789999999999999999999875433332  356689999999999986 5578987642   2223445689999


Q ss_pred             cccc
Q psy5474         134 MAEM  137 (138)
Q Consensus       134 ~~~~  137 (138)
                      +.++
T Consensus       107 ~~~~  110 (409)
T PHA03235        107 FASL  110 (409)
T ss_pred             hHHH
Confidence            8765

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.24  E-value=2.3e-11  Score=92.68  Aligned_cols=78  Identities=28%  Similarity=0.511  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy5474          56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA  135 (138)
Q Consensus        56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~  135 (138)
                      .+.+..+++.+++++|++||+++++++.++ ++|++.|+++.|||++|++.++. .|......  ..+.|.+|+..|++.
T Consensus        39 ~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~-~~~~~~~~--~~~~~~~~~~~C~~~  114 (335)
T PHA03087         39 NSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMT-LPFQIYYY--ILFQWSFGEFACKIV  114 (335)
T ss_pred             hhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHh-HHHHHHHH--hCCCCCCCcHHHHHH
Confidence            556788899999999999999999998877 88999999999999999987664 77766433  346899999999987


Q ss_pred             cc
Q psy5474         136 EM  137 (138)
Q Consensus       136 ~~  137 (138)
                      .+
T Consensus       115 ~~  116 (335)
T PHA03087        115 SG  116 (335)
T ss_pred             HH
Confidence            64

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.94  E-value=7.1e-10  Score=79.56  Aligned_cols=62  Identities=37%  Similarity=0.682  Sum_probs=54.0

Q ss_pred             hhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy5474          74 GNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMAEM  137 (138)
Q Consensus        74 GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~~~  137 (138)
                      ||+++++++.++|++|++.++|+.|||++|++.++...|..+.....  +.|.+|+..|++..+
T Consensus         1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~--~~~~~~~~~C~~~~~   62 (257)
T PF00001_consen    1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLF--DDWIFSSFLCRIFGF   62 (257)
T ss_dssp             HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH--SSCTSHHHHHHHHHH
T ss_pred             CchhehhhhhhhccCCChhHHHHHHHHHHHHhhcccccccccccccc--ccccccccccccccc
Confidence            89999999999999999999999999999999999888887765543  589999999998754

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.18  E-value=7.9e-07  Score=65.95  Aligned_cols=48  Identities=33%  Similarity=0.606  Sum_probs=44.3

Q ss_pred             HHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5474          69 CIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLV  116 (138)
Q Consensus        69 ~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~  116 (138)
                      ++|++||..++.++.++|++|+|+++++..+|++|++.....+|....
T Consensus         2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~   49 (257)
T PF10320_consen    2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLF   49 (257)
T ss_pred             EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            468999999999999999999999999999999999999888887764

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>KOG2087|consensus

Probab=97.31  E-value=6.5e-05  Score=57.81  Aligned_cols=74  Identities=19%  Similarity=0.203  Sum_probs=52.6

Q ss_pred             HHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----Ccccccccccccccc
Q psy5474          64 CSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKP-----ETWQMGEHMWKMAEM  137 (138)
Q Consensus        64 ~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~-----~~w~~g~~~C~~~~~  137 (138)
                      --++.++++.||.+|++.....+...+...++++|||++|++.++...-...++.....     .-|=-+...|++.+|
T Consensus        31 vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~~aGf  109 (363)
T KOG2087|consen   31 VWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCPVAGF  109 (363)
T ss_pred             hhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCchHHH
Confidence            34567789999999999888777777889999999999999988754444444332211     112234567988776

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=96.24  E-value=0.019  Score=41.21  Aligned_cols=51  Identities=12%  Similarity=0.092  Sum_probs=36.4

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccC
Q psy5474          86 KDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMAEMM  138 (138)
Q Consensus        86 ~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~~~~  138 (138)
                      +++|...+-++.||.++|++.++..+.......  .++.-.-++..|..++|+
T Consensus        30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l--~~~~i~~~s~~C~aqGf~   80 (201)
T PF11710_consen   30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWL--ARGGIIAPSPFCQAQGFF   80 (201)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCeeCCCCchhhhHHH
Confidence            556778888999999999999987655333333  233444567899988763

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.11  E-value=0.015  Score=44.06  Aligned_cols=51  Identities=31%  Similarity=0.413  Sum_probs=41.9

Q ss_pred             HHHHHHhhhHHhhhHhhcCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5474          67 ILCIGVLGNIMVPCVILKSKDMRN-STNIFLMNLSIADLMVLLVCTPTVLVEV  118 (138)
Q Consensus        67 i~~~g~~GN~lvl~~i~~~~~l~~-~~~~fl~nLa~aDl~~~~~~~P~~~~~~  118 (138)
                      +.++|+++|++-+.++ .+|.+|+ +.|.++.-+|++|++.....++..+...
T Consensus         6 ~~~~g~~~N~~h~~VL-trk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~   57 (318)
T PF10324_consen    6 LSIFGLFINIFHLIVL-TRKSMRSSSINILLIGIAICDLLYMLSILIWELFFF   57 (318)
T ss_pred             EeHHHHHHHHHHhhhc-CChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4568999999887765 6677887 8999999999999999988888766443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=95.46  E-value=0.093  Score=39.93  Aligned_cols=60  Identities=17%  Similarity=0.263  Sum_probs=44.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhHhh---cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5474          56 IRTPSMVLCSIILCIGVLGNIMVPCVIL---KSKDMRNSTNIFLMNLSIADLMVLLVCTPTVL  115 (138)
Q Consensus        56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~---~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~  115 (138)
                      .+....++..+.+++|++||+.++.+-.   +++|.-.|.+..+.+||++.++.-....-...
T Consensus         5 ~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~   67 (303)
T PF05296_consen    5 LEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSF   67 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566788899999999999998765543   23333459999999999999987765443333

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=95.43  E-value=0.042  Score=41.92  Aligned_cols=73  Identities=15%  Similarity=0.213  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy5474          59 PSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMAEM  137 (138)
Q Consensus        59 ~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~~~  137 (138)
                      .+.++..+...++++|-++++....+.|++|++.+-++.-++++|++.....+.....    .  .-.-++..|++++|
T Consensus         8 ~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~----~--~~~~~s~lC~~Qaf   80 (303)
T PF05462_consen    8 TLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLS----P--SAGENSFLCQFQAF   80 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhc----c--cCCCCCcchhhHhH
Confidence            4556666778889999999999999999999999999999999999876544332221    1  11234677988775

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.85  E-value=0.055  Score=40.25  Aligned_cols=44  Identities=34%  Similarity=0.514  Sum_probs=39.7

Q ss_pred             HHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy5474          67 ILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVC  110 (138)
Q Consensus        67 i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~  110 (138)
                      +.++|++.|.++++.+.+.|++|++-+.+-.+.|++|.+.++..
T Consensus         3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~   46 (274)
T PF10328_consen    3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIF   46 (274)
T ss_pred             eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999988753

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=93.06  E-value=0.25  Score=37.09  Aligned_cols=46  Identities=17%  Similarity=0.291  Sum_probs=34.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCccccccccccccccC
Q psy5474          89 RNSTNIFLMNLSIADLMVLLV-CTPTVLVEVNSKPETWQMGEHMWKMAEMM  138 (138)
Q Consensus        89 ~~~~~~fl~nLa~aDl~~~~~-~~P~~~~~~~~~~~~w~~g~~~C~~~~~~  138 (138)
                      .+|.+..+.|||+++.++.++ ++|.... .. ..+  .|++..||+.-|+
T Consensus         8 ~kp~dlIl~hLa~aN~lvLl~rGip~~~~-~~-~~~--~~~d~gCK~v~Y~   54 (265)
T PF03402_consen    8 LKPIDLILIHLALANILVLLSRGIPQTMA-FF-GWK--FFDDIGCKIVFYI   54 (265)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhHHHHHH-Hh-hcc--cCCCceeeeeeee
Confidence            569999999999999988765 5675443 22 222  3799999988764

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=90.52  E-value=0.6  Score=35.16  Aligned_cols=49  Identities=22%  Similarity=0.409  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHhhhHHhhhHhhcCC-CCCchHHHHHHHHHHHHHHHHHHHH
Q psy5474          63 LCSIILCIGVLGNIMVPCVILKSK-DMRNSTNIFLMNLSIADLMVLLVCT  111 (138)
Q Consensus        63 ~~~~i~~~g~~GN~lvl~~i~~~~-~l~~~~~~fl~nLa~aDl~~~~~~~  111 (138)
                      ++.+.+.+|+.-|+++++++.++. +.-+...+++.|-|+.|++.+....
T Consensus         4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~   53 (292)
T PF10317_consen    4 YHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAF   53 (292)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788899999999887765443 3334678999999999999877644

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=89.94  E-value=1.5  Score=33.63  Aligned_cols=54  Identities=22%  Similarity=0.172  Sum_probs=44.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHH
Q psy5474          56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLV  109 (138)
Q Consensus        56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~  109 (138)
                      .+..+++.+.+..++-.+-....+.++.++++.|.+.|-...=|++.|++....
T Consensus        31 ~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~   84 (313)
T PF10321_consen   31 KRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFI   84 (313)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHh
Confidence            445677777777777777788888888887777899999999999999997654

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	138
4dkl_A	464	Crystal Structure Of The Mu-Opioid Receptor Bound T		4e-05
4ea3_B	434	Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI		4e-05
4djh_A	480	Structure Of The Human Kappa Opioid Receptor In Com		4e-05
4ej4_A	461	Structure Of The Delta Opioid Receptor Bound To Nal		5e-04
3pbl_A	481	Structure Of The Human Dopamine D3 Receptor In Comp		9e-04

>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 61  MVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTV-LVEVN 119
           M L SI+  +G+ GN +V  VI++   M+ +TNI++ NL++AD +     T T+    VN
Sbjct: 21  MALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALA----TSTLPFQSVN 76
Query: 120 SKPETWQMGEHMWKM 134
               TW  G  + K+
Sbjct: 77  YLMGTWPFGNILCKI 91

>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 66  IILCIG-VLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLL 108
           + +C+G +LGN +V  VIL+   M+ +TNI++ NL++AD +VLL
Sbjct: 133 LAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLL 176

>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 43/67 (64%), Gaps = 6/67 (8%)
Query: 45  GFDDGPQFPAYIRTPSM-----VLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNL 99
           G +D    PA+I +P++      + S++  +G++GN +V  VI++   M+ +TNI++ NL
Sbjct: 6   GSEDAQLEPAHI-SPAIPVIITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNL 64
Query: 100 SIADLMV 106
           ++AD +V
Sbjct: 65  ALADALV 71

>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 63  LCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTV-LVEVNSK 121
           L S +  +G+LGN++V   I++   ++ +TNI++ NL++AD +     T T+        
Sbjct: 20  LYSAVCAVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALADALA----TSTLPFQSAKYL 75
Query: 122 PETWQMGEHMWK 133
            ETW  GE + K
Sbjct: 76  METWPFGELLCK 87

>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 60  SMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVL 115
           ++  C++IL I V GN +V   +LK + ++ +TN  +++L++ADL+V  +  P V+
Sbjct: 42  ALSYCALILAI-VFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVV 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	138
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	4e-17
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	7e-17
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	2e-13
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	9e-13
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	2e-12
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	2e-12
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	4e-12
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	2e-11
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	2e-11
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	4e-11
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	6e-11
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	9e-11
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	2e-10
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	4e-10
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	5e-08

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 74.7 bits (184), Expect = 4e-17
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 2/112 (1%)

Query: 27  ENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSK 86
           +N   ++   S  +       +    PA+         ++I+   V+GN++V  +IL  K
Sbjct: 2   DNVLPVDSDLSPNISTNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHK 61

Query: 87  DMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMAEMM 138
            MR  TN FL+NL+ A+  +    T             W  G    K     
Sbjct: 62  RMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVH--NEWYYGLFYCKFHNFF 111

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 10/102 (9%)

Query: 33  NLTNSSFVPKINGFDDGPQFPAYIRTPSMVLC---SIILCIGVLGNIMVPCVILKSKDMR 89
           N T     P      + PQ+         +L     +++ +G   N +   V ++ K +R
Sbjct: 16  NKTGVVRSP-----FEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLR 70

Query: 90  NSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHM 131
              N  L+NL++ADL ++     T L    S    +  G   
Sbjct: 71  TPLNYILLNLAVADLFMVFGGFTTTL--YTSLHGYFVFGPTG 110

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 63.0 bits (152), Expect = 9e-13
 Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 13  LTSPDNWTLAIGAAENASLLNLTNSSFVPK---INGFDDGPQFPAYIRTPSMVLCSIILC 69
             +P   ++ +  A  +S+ +  N   + +     G  +           + V+  +I C
Sbjct: 16  AGAPGPTSVPLVKAHRSSVSDYVNYDIIVRHYNYTGKLNISADKENSIKLTSVVFILICC 75

Query: 70  IGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGE 129
             +L NI V   I K+K        F+ NL+++DL+  +  T  +L+       T+++  
Sbjct: 76  FIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSG---ATTYKLTP 132

Query: 130 HMWKMAEMM 138
             W + E  
Sbjct: 133 AQWFLREGS 141

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 62.0 bits (150), Expect = 2e-12
 Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 7/106 (6%)

Query: 27  ENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSK 86
           +    L+             DDG            V  +I +   +LGN++V   +  + 
Sbjct: 2   KTIIALSYIFCLVFADYKDDDDGAPPIMGSSVYITVELAIAVLA-ILGNVLVCWAVWLNS 60

Query: 87  DMRNSTNIFLMNLSIADLMV-LLVCTPTVLVEVNSKPETWQMGEHM 131
           +++N TN F+++L+ AD+ V +L     + +        +    H 
Sbjct: 61  NLQNVTNYFVVSLAAADIAVGVLAIPFAITIST-----GFCAACHG 101

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 61.9 bits (150), Expect = 2e-12
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 62  VLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSK 121
            L SI+  +G+ GN +V  VI++   M+ +TNI++ NL++AD +      P   V     
Sbjct: 22  ALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATS-TLPFQSVNYLMG 80

Query: 122 PETWQMGEHMWKM 134
             TW  G  + K+
Sbjct: 81  --TWPFGNILCKI 91

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 61.3 bits (148), Expect = 4e-12
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 4/107 (3%)

Query: 26  AENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKS 85
              ASL  L++            G          ++  C++IL I V GN +V   +LK 
Sbjct: 8   GAPASLSQLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAI-VFGNGLVCMAVLKE 66

Query: 86  KDMRNSTNIFLMNLSIADLMV-LLVCTPTVLVEVNSKPETWQMGEHM 131
           + ++ +TN  +++L++ADL+V  LV    V +EV      W      
Sbjct: 67  RALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTG--GVWNFSRIC 111

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 59.0 bits (142), Expect = 2e-11
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 8/112 (7%)

Query: 22  AIGAAENAS-LLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPC 80
           A+G   N S  L   N S  P  +      +   ++    +V+  I+L I V GN++V  
Sbjct: 7   AMGQPGNGSAFLLAPNRSHAP--DHDVTQQRDEVWVVGMGIVMSLIVLAI-VFGNVLVIT 63

Query: 81  VILKSKDMRNSTNIFLMNLSIADLMV-LLVCTPTVLVEVNSKPETWQMGEHM 131
            I K + ++  TN F+ +L+ ADL++ L V        +      W  G   
Sbjct: 64  AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM---WTFGNFW 112

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 58.9 bits (142), Expect = 2e-11
 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 60  SMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMV-LLVCTPTVLVEV 118
            +VL +I L   V  N++V   +   + +    N+++++LS+ADL+V  +V    +L  +
Sbjct: 12  VVVLSTICLVT-VGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLL 70

Query: 119 NSKPETWQMGEHMWKM 134
                 W +G  +   
Sbjct: 71  M---SKWSLGRPLCLF 83

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 58.2 bits (140), Expect = 4e-11
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 60  SMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMV-LLVCTPTVLVEV 118
            +V  S+ L   ++GNI+V   I  ++ ++   N FL +L+ ADL++ +       L  V
Sbjct: 27  VLVAGSLSLVT-IIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTV 85

Query: 119 NSKPETWQMGEHMWKM 134
                 W +G  +  +
Sbjct: 86  I---GYWPLGPVVCDL 98

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 57.6 bits (139), Expect = 6e-11
 Identities = 16/47 (34%), Positives = 31/47 (65%)

Query: 62  VLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLL 108
            + SII   G++GN +V  V+   K +R+ T+ + ++LS+ADL+ ++
Sbjct: 53  TIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI 99

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 57.2 bits (138), Expect = 9e-11
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 65  SIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPET 124
            I   IG  GN +V  +  K+K ++   N+F++NL+ +D    LV    ++  ++   + 
Sbjct: 42  GICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMT-ISCFLKK 100

Query: 125 WQMGEHM 131
           W  G   
Sbjct: 101 WIFGFAA 107

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 56.7 bits (136), Expect = 2e-10
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 7/72 (9%)

Query: 61  MVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMV-LLVCTPTVLVEVN 119
            V  +I +   +LGN++V   +  + +++N TN F+++L+ AD+ V +L     + +   
Sbjct: 26  TVELAIAVLA-ILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST- 83

Query: 120 SKPETWQMGEHM 131
                +    H 
Sbjct: 84  ----GFCAACHG 91

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 55.3 bits (133), Expect = 4e-10
 Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 8/118 (6%)

Query: 19  WTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIG----VLG 74
           W  A      +   N T +     I  F  G           +V   I++ +     V G
Sbjct: 140 WDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYAADEVWVVGMGIVMSLIVLAIVFG 199

Query: 75  NIMVPCVILKSKDMRNSTNIFLMNLSIADLMV-LLVCTPTVLVEVNSKPETWQMGEHM 131
           N++V   I K + ++  TN F+ +L+ ADL++ L V        +      W  G   
Sbjct: 200 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKT---WTFGNFW 254

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 49.0 bits (117), Expect = 5e-08
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 5/73 (6%)

Query: 60  SMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMV-LLVCTPTVLVEV 118
           S+++  ++L I V GN++V   I  ++ ++  TN+F+ +L+ ADL+V LLV      + V
Sbjct: 15  SLLMALVVLLI-VAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVV 73

Query: 119 NSKPETWQMGEHM 131
                 W  G  +
Sbjct: 74  RGT---WLWGSFL 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	138
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.69
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.63
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.62
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.6
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.56
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.56
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.55
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.52
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.51
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.5
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.49
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.48
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.47
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.45
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.44
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.43
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.43
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.42
2lot_A	64	Apelin receptor; membrane protein; NMR {Homo sapie	97.46

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.69  E-value=2.9e-17  Score=129.93  Aligned_cols=82  Identities=17%  Similarity=0.353  Sum_probs=70.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc
Q psy5474          56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMR---NSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMW  132 (138)
Q Consensus        56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~---~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C  132 (138)
                      .++++.++|.+++++|++||++|++++.++|++|   +++|+|++|||++|++++++.+|+.+.++....+.|.||+.+|
T Consensus        31 ~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~~~C  110 (510)
T 4grv_A           31 SKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGC  110 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhHHHH
Confidence            4567888999999999999999999998877554   7899999999999999999999999887766667899999999


Q ss_pred             ccccc
Q psy5474         133 KMAEM  137 (138)
Q Consensus       133 ~~~~~  137 (138)
                      ++..|
T Consensus       111 ~~~~~  115 (510)
T 4grv_A          111 RGYYF  115 (510)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98765

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.63  E-value=1e-15  Score=112.53  Aligned_cols=78  Identities=27%  Similarity=0.493  Sum_probs=68.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy5474          56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA  135 (138)
Q Consensus        56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~  135 (138)
                      .+.+..++|.+++++|++||++|++++.++|++|+++|+|+.|||++|+++++. +|.......   ..|.+|+..|++.
T Consensus        10 ~~~i~~i~y~ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l~-~p~~~~~~~---~~~~~~~~~c~~~   85 (296)
T 2lnl_A           10 NKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALT-LPIWAASKV---NGWIFGTFLCKVV   85 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHHH-HHHHHHHHH---SSSCCSSHHHHHH
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHh-hhHHHhhcc---CCCccchhHHHHH
Confidence            566788999999999999999999999999999999999999999999998765 777665443   3699999999987


Q ss_pred             cc
Q psy5474         136 EM  137 (138)
Q Consensus       136 ~~  137 (138)
                      .+
T Consensus        86 ~~   87 (296)
T 2lnl_A           86 SL   87 (296)
T ss_dssp             HH
T ss_pred             hh
Confidence            64

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.62  E-value=2.2e-15  Score=113.28  Aligned_cols=78  Identities=27%  Similarity=0.387  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy5474          58 TPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMAEM  137 (138)
Q Consensus        58 ~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~~~  137 (138)
                      .++.+++.+++++|++||+++++++.++|++|+++|+|+.|||++|++.++..+|..+.+...  +.|.+|+..|++..+
T Consensus        33 ~~~~~~~~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~--~~~~~~~~~C~~~~~  110 (364)
T 2ks9_A           33 VLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVH--NEWYYGLFYCKFHNF  110 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH--TSCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCccchHHHHHhHHH
Confidence            445888999999999999999999999999999999999999999999988888988776543  579999999998754

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.60  E-value=1.1e-15  Score=120.45  Aligned_cols=80  Identities=24%  Similarity=0.339  Sum_probs=72.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy5474          56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA  135 (138)
Q Consensus        56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~  135 (138)
                      ...++.+++.+++++|++||+++++++.++|++|+++|+|+.|||++|++++++.+|+.+.+...  +.|.+|+..|++.
T Consensus        39 ~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~--~~w~~~~~~C~~~  116 (500)
T 2rh1_A           39 WVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM--KMWTFGNFWCEFW  116 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH--TSCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcCCcchhhHH
Confidence            55677889999999999999999999999999999999999999999999999889998876654  5899999999987


Q ss_pred             cc
Q psy5474         136 EM  137 (138)
Q Consensus       136 ~~  137 (138)
                      .|
T Consensus       117 ~~  118 (500)
T 2rh1_A          117 TS  118 (500)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.56  E-value=1.2e-14  Score=108.26  Aligned_cols=80  Identities=19%  Similarity=0.254  Sum_probs=70.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy5474          56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA  135 (138)
Q Consensus        56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~  135 (138)
                      ...++.+++.+++++|++||+++++++.++|++|++.|+++.|||++|++.++..+|..+.....  +.|.+|+..|++.
T Consensus        37 ~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~--~~~~~~~~~C~~~  114 (349)
T 1u19_A           37 QFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLH--GYFVFGPTGCNLE  114 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH--TSCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhc--CeeeCChhHHHHH
Confidence            45577888999999999999999999999999999999999999999999999888988765543  5799999999987


Q ss_pred             cc
Q psy5474         136 EM  137 (138)
Q Consensus       136 ~~  137 (138)
                      .+
T Consensus       115 ~~  116 (349)
T 1u19_A          115 GF  116 (349)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.56  E-value=4e-15  Score=115.00  Aligned_cols=80  Identities=18%  Similarity=0.279  Sum_probs=72.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy5474          56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA  135 (138)
Q Consensus        56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~  135 (138)
                      ...++.+++.+++++|++||+++++++.+++++|+++|+|+.|||++|++.+++.+|..+.....  +.|.+|+..|++.
T Consensus        22 ~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~--~~~~~~~~~C~~~   99 (467)
T 3uon_A           22 EVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVI--GYWPLGPVVCDLW   99 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHS--SSCCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCccCCcchHhHH
Confidence            45678899999999999999999999999999999999999999999999999889998876644  5899999999987


Q ss_pred             cc
Q psy5474         136 EM  137 (138)
Q Consensus       136 ~~  137 (138)
                      .|
T Consensus       100 ~~  101 (467)
T 3uon_A          100 LA  101 (467)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.55  E-value=8.5e-15  Score=114.23  Aligned_cols=80  Identities=26%  Similarity=0.455  Sum_probs=70.8

Q ss_pred             cchhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccc
Q psy5474          54 AYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWK  133 (138)
Q Consensus        54 ~~~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~  133 (138)
                      ...+.++.+++.+++++|++||++|++++.+++++|+++|+|+.|||++|++++ +.+|+.+.....   .|.+|+..|+
T Consensus        45 ~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~-~~~p~~~~~~~~---~~~~~~~~C~  120 (502)
T 3odu_A           45 NFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAVA---NWYFGNFLCK  120 (502)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHH-TTHHHHHHHHHT---CCCSHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc---CCcCCchhhh
Confidence            336678899999999999999999999999999999999999999999999995 568998876643   6999999999


Q ss_pred             cccc
Q psy5474         134 MAEM  137 (138)
Q Consensus       134 ~~~~  137 (138)
                      +..|
T Consensus       121 ~~~~  124 (502)
T 3odu_A          121 AVHV  124 (502)
T ss_dssp             HHHH
T ss_pred             hHHH
Confidence            8765

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.52  E-value=7.2e-15  Score=114.08  Aligned_cols=81  Identities=20%  Similarity=0.290  Sum_probs=69.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy5474          56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA  135 (138)
Q Consensus        56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~  135 (138)
                      .+.++.+++.+++++|++||+++++++.++|++|+++|+|+.|||++|++++++.+|..+..... .+.|.+|...|++.
T Consensus        37 ~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~-~~~~~~~~~~C~~~  115 (481)
T 3pbl_A           37 PHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVT-GGVWNFSRICCDVF  115 (481)
T ss_dssp             ----CCSHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHT-TSCCCSCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccccCcchhhhH
Confidence            34566788899999999999999999999999999999999999999999998889988876543 36899999999987


Q ss_pred             cc
Q psy5474         136 EM  137 (138)
Q Consensus       136 ~~  137 (138)
                      .|
T Consensus       116 ~~  117 (481)
T 3pbl_A          116 VT  117 (481)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.50  E-value=4.2e-14  Score=109.06  Aligned_cols=79  Identities=30%  Similarity=0.515  Sum_probs=71.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy5474          56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA  135 (138)
Q Consensus        56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~  135 (138)
                      .+.++.+++.+++++|++||+++++++.+++++|+++|+|+.|||++|++.+++ +|+.+.....  +.|.+|...|++.
T Consensus        16 ~~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~--~~~~~~~~~C~~~   92 (464)
T 4dkl_A           16 TAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYLM--GTWPFGNILCKIV   92 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--SSCCSCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh--CCcccccchhhhH
Confidence            567888999999999999999999999999999999999999999999998877 8988876654  4799999999987


Q ss_pred             cc
Q psy5474         136 EM  137 (138)
Q Consensus       136 ~~  137 (138)
                      .|
T Consensus        93 ~~   94 (464)
T 4dkl_A           93 IS   94 (464)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.49  E-value=1.6e-14  Score=111.23  Aligned_cols=80  Identities=23%  Similarity=0.348  Sum_probs=70.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy5474          56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA  135 (138)
Q Consensus        56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~  135 (138)
                      ...++.+++.+++++|++||+++++++.+++++|+++|+|+.|||++|++.+++.+|..+.+...  +.|.+|+..|++.
T Consensus         7 ~~~~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~--~~~~~~~~~C~~~   84 (452)
T 3rze_A            7 QLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLM--SKWSLGRPLCLFW   84 (452)
T ss_dssp             --CGGGTHHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHS--SSCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCccCCchhHhHH
Confidence            34467788999999999999999999999999999999999999999999998889999887654  5899999999987


Q ss_pred             cc
Q psy5474         136 EM  137 (138)
Q Consensus       136 ~~  137 (138)
                      .|
T Consensus        85 ~~   86 (452)
T 3rze_A           85 LS   86 (452)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.48  E-value=3.2e-14  Score=110.50  Aligned_cols=80  Identities=15%  Similarity=0.311  Sum_probs=69.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy5474          56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA  135 (138)
Q Consensus        56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~  135 (138)
                      .+.++.+++.+++++|++||+++++++.+++++|+++|+|+.|||++|++++++ +|..+.... ..+.|.+|+..|++.
T Consensus        19 ~~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~~-~~~~~~~~~-~~~~~~~~~~~C~~~   96 (484)
T 3vw7_A           19 LTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSV-LPFKISYYF-SGSDWQFGSELCRFV   96 (484)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTT-HHHHHHHHH-TTSCCCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hcCCcccchhHHhHH
Confidence            567889999999999999999999999999999999999999999999999765 666555443 335899999999987


Q ss_pred             cc
Q psy5474         136 EM  137 (138)
Q Consensus       136 ~~  137 (138)
                      .|
T Consensus        97 ~~   98 (484)
T 3vw7_A           97 TA   98 (484)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.47  E-value=4.2e-14  Score=112.00  Aligned_cols=77  Identities=26%  Similarity=0.432  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy5474          58 TPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMAEM  137 (138)
Q Consensus        58 ~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~~~  137 (138)
                      .++.+++.+++++|++||++|++++.++|++|+++|+|+.|||++|++++++..|..+..   ....|.+|...|++..|
T Consensus        64 ~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~---~~~~~~~~~~~c~~~~~  140 (520)
T 3v2y_A           64 KLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS---GATTYKLTPAQWFLREG  140 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS---GGGGTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc---cccceeeCccccchHHH
Confidence            678899999999999999999999999999999999999999999999999988887754   33589999999997654

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.45  E-value=8e-14  Score=108.09  Aligned_cols=78  Identities=19%  Similarity=0.278  Sum_probs=69.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy5474          56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA  135 (138)
Q Consensus        56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~  135 (138)
                      ...++.+++.+++++|++||+++++++.+++++|+++|+|+.|||++|++++++.+|+.+...    ..|.+|...|++.
T Consensus        20 ~~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~----~~~~~~~~~C~~~   95 (488)
T 3eml_A           20 GSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS----TGFCAACHGCLFI   95 (488)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHT----TCCEECHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccccccchHHHHH
Confidence            456788999999999999999999999999999999999999999999999998899887643    2699999999987


Q ss_pred             cc
Q psy5474         136 EM  137 (138)
Q Consensus       136 ~~  137 (138)
                      .|
T Consensus        96 ~~   97 (488)
T 3eml_A           96 AC   97 (488)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.44  E-value=1.3e-13  Score=106.67  Aligned_cols=80  Identities=24%  Similarity=0.364  Sum_probs=69.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCccccccccccc
Q psy5474          56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVC-TPTVLVEVNSKPETWQMGEHMWKM  134 (138)
Q Consensus        56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~-~P~~~~~~~~~~~~w~~g~~~C~~  134 (138)
                      ....+.+++.+++++|++||+++++++.++|++|++.|++++|||++|++.+++. +|..+....  .+.|.+|+..|++
T Consensus        33 ~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~--~~~~~~~~~~C~~  110 (448)
T 2z73_A           33 VYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCF--LKKWIFGFAACKV  110 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHH--TTSCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHh--cCCccCCHHHHHH
Confidence            4566788899999999999999999999999999999999999999999998874 788877654  3589999999998


Q ss_pred             ccc
Q psy5474         135 AEM  137 (138)
Q Consensus       135 ~~~  137 (138)
                      ..+
T Consensus       111 ~~~  113 (448)
T 2z73_A          111 YGF  113 (448)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.43  E-value=4.5e-14  Score=103.53  Aligned_cols=80  Identities=25%  Similarity=0.380  Sum_probs=71.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy5474          56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA  135 (138)
Q Consensus        56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~  135 (138)
                      .+....+++.+++++|++||+++++++.++|++|++.|+++.|||++|++.++..+|..+.....  +.|.+|+..|++.
T Consensus        10 ~~~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~--~~~~~~~~~C~~~   87 (315)
T 4amj_A           10 WEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVR--GTWLWGSFLCELW   87 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH--SSCCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhc--CCeeccccHHHHH
Confidence            45677889999999999999999999999999999999999999999999988788988876543  5899999999987


Q ss_pred             cc
Q psy5474         136 EM  137 (138)
Q Consensus       136 ~~  137 (138)
                      .+
T Consensus        88 ~~   89 (315)
T 4amj_A           88 TS   89 (315)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.43  E-value=1.5e-13  Score=105.60  Aligned_cols=78  Identities=19%  Similarity=0.278  Sum_probs=69.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy5474          56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA  135 (138)
Q Consensus        56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~  135 (138)
                      ...+..+++.+++++|++||+++++++.++|++|+++|+|+.|||++|+++++..+|..+...    ..|.+|...|++.
T Consensus        30 ~~~~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~----~~~~~~~~~C~~~  105 (447)
T 4eiy_A           30 GSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS----TGFCAACHGCLFI  105 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHH----TTCEEEHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccccCccHHHHH
Confidence            456788899999999999999999999999999999999999999999999988899887643    2688899999987


Q ss_pred             cc
Q psy5474         136 EM  137 (138)
Q Consensus       136 ~~  137 (138)
                      .|
T Consensus       106 ~~  107 (447)
T 4eiy_A          106 AC  107 (447)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.42  E-value=1.1e-13  Score=109.18  Aligned_cols=80  Identities=25%  Similarity=0.364  Sum_probs=72.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy5474          56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA  135 (138)
Q Consensus        56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~  135 (138)
                      ....+.+++.+++++|++||+++++++.++|++|++.|+|++|||++|++++++.+|..+.....  +.|.+|+..|++.
T Consensus       181 ~~~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~--~~~~~~~~~C~~~  258 (514)
T 3sn6_R          181 WVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT--KTWTFGNFWCEFW  258 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHH--TSCCSCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHc--CCeeCCcchhhhH
Confidence            55678889999999999999999999999999999999999999999999998889998876654  5899999999987


Q ss_pred             cc
Q psy5474         136 EM  137 (138)
Q Consensus       136 ~~  137 (138)
                      .|
T Consensus       259 ~~  260 (514)
T 3sn6_R          259 TS  260 (514)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A

Probab=97.46  E-value=1.2e-05  Score=46.33  Aligned_cols=30  Identities=17%  Similarity=0.309  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHhhhHHhhhHhhcCCCC
Q psy5474          59 PSMVLCSIILCIGVLGNIMVPCVILKSKDM   88 (138)
Q Consensus        59 ~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l   88 (138)
                      +++++|.+++++|++||++|++++.++|.-
T Consensus        30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~~~~~   59 (64)
T 2lot_A           30 LIPAIYMLVFLLGTTGNGLVLWTVFRKKGH   59 (64)
T ss_dssp             SSHHHHHHTTTTTTTSSSSHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHhhhhhheeeeeEeccc
Confidence            678999999999999999999998887753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	138
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	2e-10

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.4 bits (132), Expect = 2e-10
 Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 32  LNLTNSSFVPKINGFDDGPQF---PAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDM 88
           +  +N + V  +    + PQ+     +  +       +++ +G   N +   V ++ K +
Sbjct: 11  VPFSNKTGV--VRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKL 68

Query: 89  RNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMAEMM 138
           R   N  L+NL++ADL ++            S    +  G     +    
Sbjct: 69  RTPLNYILLNLAVADLFMVFGGFT--TTLYTSLHGYFVFGPTGCNLEGFF 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	138
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.56

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.56  E-value=5.6e-15  Score=108.55  Aligned_cols=83  Identities=18%  Similarity=0.261  Sum_probs=71.5

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc
Q psy5474          53 PAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMW  132 (138)
Q Consensus        53 ~~~~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C  132 (138)
                      +++...++.+++.+++++|++||+++++++.++|++|++.|+++.|||++|++.++...|..+.....  +.|.+++..|
T Consensus        33 ~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~--~~~~~~~~~c  110 (348)
T d1u19a_          33 EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLH--GYFVFGPTGC  110 (348)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH--TSCTTHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhcc--CccccCchhh
Confidence            33345677888999999999999999999999999999999999999999999998888988776543  5788999999


Q ss_pred             ccccc
Q psy5474         133 KMAEM  137 (138)
Q Consensus       133 ~~~~~  137 (138)
                      +...+
T Consensus       111 ~~~~~  115 (348)
T d1u19a_         111 NLEGF  115 (348)
T ss_dssp             HHHHH
T ss_pred             hhhhh
Confidence            87654