Psyllid ID: psy5485

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----

MRLILNSTATHFGRLTLLKHSQSSRNQREKQASKTGWEKASRFENAFRIKADPGGNRSRDLGRSFEHFPLVGELFKPLSFTLQTSDLVDSLTAVSTPLSQIEVCCIDRLAKYPKCRFGTRRKLVKLKNASQNFSGTKMEIRDKMPQNEKLNGTMGHPLKFGTVPANLGRLASLLVRILTGSSDVSVAGTAPPPPTPTVQNIRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLAKTSDERWSDLEAKEETKAPSAPKTPYKRDWDKVAQQIEDEKKEGEAALNELFQKIYGEGSDEVRKAMNKSFLESGGTVLSTNWDEVKRSTVDIKPPEGLEYKKWDS

cEEEEccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHcccccEEEccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHHccccccccHHHHHcccccccccccccccccccccccHHHHHccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccEEEcccEEEEEEEEccccccccEEEEEccEEEEEEEEcccccccEEEEEEccccccccccEEEEEccEEEEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccEEccccHHHHcccccccccccccccccccc

cEEEEcccHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHEEEEccccccccccccccccccccHHHccccccEEEEccccHcccccccccccHEEEEEHHHHHccccccccccHHHEEEcccccccEEEEEEcccccccHHHHHHHHccccccccccccccccccHHHEEccccccccccccccccccccccccEEEEEccccEEEEEEEEEcccHccEEEEEcccEEEEEEEccccccccEEEcccccccccccccEEEEEccEEEEEEEccccccHHHHcccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccEEEEccHHHcccccEEcccccccEEEEccc

MRLILNSTATHFGRLTLLKHSQSSRNQREKQASKTGWEKASRFENAFRikadpggnrsrdlgrsfehfplvgelfkplsftlqtsdlvdsltavstplsqIEVCCIDRlakypkcrfgtrRKLVKLKnasqnfsgtkmeirdkmpqneklngtmghplkfgtvpanLGRLASLLVRILTgssdvsvagtapppptptvqnirhnwYQTEKQVVVDALIKQAKAETtqvnidqnsVDIVVtldpssstqhrlhlnlyrpidpttssfriLGTKIEVKLAKtsderwsdleakeetkapsapktpykrdWDKVAQQIEDEKKEGEAALNELFQKIYGEGSDEVRKAMNKSFLesggtvlstnwdevkrstvdikppegleykkwds

MRLILNStathfgrltllkhsqssrnqrekqasktgwekasrfenafrikadpggnrsrDLGRSFEHFPLVGELFKPLSFTLQTSDLVDSLTAVSTPLSQIEVCCIDRLAKypkcrfgtrrklvklknasqnfsgtkmeirdkmpqNEKLNGTMGHPLKFGTVPANLGRLASLLVRILTGSSDVSVAGTAPPPPTPTVQNIRHNWYQTEKQVVVDALIKQAKAettqvnidqnsvDIVVTLDPssstqhrlhlnlyrpidpttssfrilGTKIEVKlaktsderwsdleakeetkapsapktpykrdWDKVAQQIEDEKKEGEAALNELFQKIYGEGSDEVRKAMNKSFLesggtvlstnwdevkrstvdikppegleykkwds

MRLILNSTATHFGRLTLLKHSQSSRNQREKQASKTGWEKASRFENAFRIKADPGGNRSRDLGRSFEHFPLVGELFKPLSFTLQTSDLVDSLTAVSTPLSQIEVCCIDRLAKYPKCRFGTRRKLVKLKNASQNFSGTKMEIRDKMPQNEKLNGTMGHPLKFGTVPANLGRLASLLVRILTGSSDVSVAGTApppptptVQNIRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLAKTSDERWSDLEAKEETKAPSAPKTPYKRDWDKVAQQIEDEKKEGEAALNELFQKIYGEGSDEVRKAMNKSFLESGGTVLSTNWDEVKRSTVDIKPPEGLEYKKWDS

***********F***************************************************SFEHFPLVGELFKPLSFTLQTSDLVDSLTAVSTPLSQIEVCCIDRLAKYPKCRFGTRRKLVKL******************************PLKFGTVPANLGRLASLLVRILTGSS***************VQNIRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDP****QHRLHLNLYRPIDPTTSSFRILGTKIEVKL***************************************************LFQKIY*********************VLSTNW***********************

*R*****TATHFGRLT**************************FENAF******************EHFPLVGELFKPLSFTLQTSDLVDSLTAVSTPLSQIEVCCIDRLAKYP***********************KMEIRD**********************************************************IRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLAKTSDERWSDLEAKEETKA********************************LFQKIYGEGSDE********************************************

MRLILNSTATHFGRLTLLK*******************KASRFENAFRIKADPGGNRSRDLGRSFEHFPLVGELFKPLSFTLQTSDLVDSLTAVSTPLSQIEVCCIDRLAKYPKCRFGTRRKLVKLKNASQNFSGTKMEIRDKMPQNEKLNGTMGHPLKFGTVPANLGRLASLLVRILTGSSDVSVAGTAPPPPTPTVQNIRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLAKTSDE*********************KRDWDKVAQQIEDEKKEGEAALNELFQKIYGEGSDEVRKAMNKSFLESGGTVLSTNWDEVKRSTVDIKPPEGLEYKKWDS

MRLILNSTATHFGRLTLLKHS***************WEKASRFENAFRIKAD****R***LGRSFEHFPLVGELFKPLSFTLQTSDLVDSLTAVSTPLSQIEVCCIDRLAKYPKCRFGTRRKLVKLKNASQNFSGTKMEIRDKMPQNEKLNGTMGHPLK**************************************VQNIRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLAKTSDERWSDLE****************RDWDKVAQQIEDEKKEGEAALNELFQKIYGEGSDEVRKAMNKSFLESGGTVLSTNWDEVKRSTVDIKPPEGLEYKKWDS

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MRLILNSTATHFGRLTLLKHSQSSRNQREKQASKTGWEKASRFENAFRIKADPGGNRSRDLGRSFEHFPLVGELFKPLSFTLQTSDLVDSLTAVSTPLSQIEVCCIDRLAKYPKCRFGTRRKLVKLKNASQNFSGTKMEIRDKMPQNEKLNGTMGHPLKFGTVPANLGRLASLLVRILTGSSDVSVAGTAPPPPTPTVQNIRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLAKTSDERWSDLEAKEETKAPSAPKTPYKRDWDKVxxxxxxxxxxxxxxxxxxxxxIYGEGSDEVRKAMNKSFLESGGTVLSTNWDEVKRSTVDIKPPEGLEYKKWDS

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		384	2.2.26 [Sep-21-2011]
Q9Y2Z0		365	Suppressor of G2 allele o	yes	N/A	0.468	0.493	0.433	2e-37
Q2KIK0		338	Suppressor of G2 allele o	yes	N/A	0.468	0.532	0.418	8e-36
B0BN85		336	Suppressor of G2 allele o	yes	N/A	0.479	0.547	0.41	2e-35
Q9CX34		336	Suppressor of G2 allele o	yes	N/A	0.479	0.547	0.395	2e-34
Q55ED0		387	Protein SUGT1 homolog OS=	yes	N/A	0.484	0.480	0.384	3e-32
Q9SUR9		350	Protein SGT1 homolog A OS	yes	N/A	0.5	0.548	0.379	2e-30
Q9SUT5		358	Protein SGT1 homolog B OS	no	N/A	0.471	0.505	0.355	3e-28
Q0JL44		367	Protein SGT1 homolog OS=O	yes	N/A	0.494	0.517	0.342	8e-26
O59709		379	Glucose-insensitive trans	yes	N/A	0.471	0.477	0.360	6e-25
Q08446		395	Protein SGT1 OS=Saccharom	yes	N/A	0.453	0.440	0.295	4e-19

>sp\|Q9Y2Z0\|SUGT1_HUMAN Suppressor of G2 allele of SKP1 homolog OS=Homo sapiens GN=SUGT1 PE=1 SV=3	Back alignment and function desciption

 Score =  156 bits (395), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/196 (43%), Positives = 121/196 (61%), Gaps = 16/196 (8%)

Query: 201 IRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPID 260
           I+++WYQTE QVV+  +IK  +     V   +  +  +V L   S   + L L L  PI 
Sbjct: 172 IKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKL--PSGEDYNLKLELLHPII 229

Query: 261 PTTSSFRILGTKIEVKLAKTSDERWSDLEAKEETKAPSA----------PKTPYKRDWDK 310
           P  S+F++L TKIE+KL K    RW  LE + +   P              +PY R+WDK
Sbjct: 230 PEQSTFKVLSTKIEIKLKKPEAVRWEKLEGQGDVPTPKQFVADVKNLYPSSSPYTRNWDK 289

Query: 311 VA----QQIEDEKKEGEAALNELFQKIYGEGSDEVRKAMNKSFLESGGTVLSTNWDEVKR 366
           +     ++ ++EK EG+AALN LFQ+IY +GSDEV++AMNKSF+ESGGTVLSTNW +V +
Sbjct: 290 LVGEIKEEEKNEKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGK 349

Query: 367 STVDIKPPEGLEYKKW 382
             V+I PP+ +E+KK+
Sbjct: 350 RKVEINPPDDMEWKKY 365

May play a role in ubiquitination and subsequent proteasomal degradation of target proteins.
Homo sapiens (taxid: 9606)

>sp\|Q2KIK0\|SUGT1_BOVIN Suppressor of G2 allele of SKP1 homolog OS=Bos taurus GN=SUGT1 PE=2 SV=1	Back alignment and function description

>sp\|B0BN85\|SUGT1_RAT Suppressor of G2 allele of SKP1 homolog OS=Rattus norvegicus GN=Sugt1 PE=2 SV=1	Back alignment and function description

>sp\|Q9CX34\|SUGT1_MOUSE Suppressor of G2 allele of SKP1 homolog OS=Mus musculus GN=Sugt1 PE=2 SV=3	Back alignment and function description

>sp\|Q55ED0\|SUGT1_DICDI Protein SUGT1 homolog OS=Dictyostelium discoideum GN=sugt1 PE=2 SV=1	Back alignment and function description

>sp\|Q9SUR9\|SGT1A_ARATH Protein SGT1 homolog A OS=Arabidopsis thaliana GN=SGT1A PE=1 SV=1	Back alignment and function description

>sp\|Q9SUT5\|SGT1B_ARATH Protein SGT1 homolog B OS=Arabidopsis thaliana GN=SGT1B PE=1 SV=1	Back alignment and function description

>sp\|Q0JL44\|SGT1_ORYSJ Protein SGT1 homolog OS=Oryza sativa subsp. japonica GN=SGT1 PE=1 SV=1	Back alignment and function description

>sp\|O59709\|GIT7_SCHPO Glucose-insensitive transcription protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=git7 PE=4 SV=2	Back alignment and function description

>sp\|Q08446\|SGT1_YEAST Protein SGT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SGT1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		384
156382363		310	predicted protein [Nematostella vectensi	0.466	0.577	0.465	2e-40
291223048		268	PREDICTED: SGT1, suppressor of G2 allele	0.471	0.675	0.490	2e-40
427781735		336	Putative suppressor of g2 allele of skp1	0.598	0.684	0.377	9e-40
427781733		336	Putative suppressor of g2 allele of skp1	0.484	0.553	0.429	1e-39
346465733		393	hypothetical protein [Amblyomma maculatu	0.468	0.458	0.426	1e-38
224587011		325	Suppressor of G2 allele of SKP1 homolog	0.473	0.56	0.455	2e-38
240848587		191	suppressor of G2 allele of SKP1-like [Ac	0.460	0.926	0.483	3e-38
47228022		338	unnamed protein product [Tetraodon nigro	0.489	0.556	0.429	4e-38
426375584		365	PREDICTED: suppressor of G2 allele of SK	0.468	0.493	0.433	5e-38
426375582		333	PREDICTED: suppressor of G2 allele of SK	0.468	0.540	0.433	6e-38

>gi\|156382363\|ref\|XP_001632523.1\| predicted protein [Nematostella vectensis] gi\|156219580\|gb\|EDO40460.1\| predicted protein [Nematostella vectensis]	Back alignment and taxonomy information

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/200 (46%), Positives = 127/200 (63%), Gaps = 21/200 (10%)

Query: 203 HNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPT 262
           ++WYQTE  VVV  +IK +K E   V I+     + VT+   S   + L L+L  P+ P+
Sbjct: 112 YDWYQTETHVVVSVMIKNSKQE--DVYIEYGDQHLSVTVRLPSGNDYSLELDLAHPVSPS 169

Query: 263 TSSFRILGTKIEVKLAKTSDERWSDLEAKEETKAPS-------APKTPYK--------RD 307
               +IL TKIE+K+ K    RWS LE       P+       A   P++        +D
Sbjct: 170 QCKTKILSTKIELKIKKLEAIRWSSLETDHNVTKPAVKFPQQNATADPHQYPSSRHVVKD 229

Query: 308 WDKVAQQI----EDEKKEGEAALNELFQKIYGEGSDEVRKAMNKSFLESGGTVLSTNWDE 363
           WDK+A ++    E EK+EGEAALN+LFQKIYGEGSDEV++AMNKSF+ESGGTVLSTNW E
Sbjct: 230 WDKLAAEVAKEDEAEKQEGEAALNQLFQKIYGEGSDEVKQAMNKSFIESGGTVLSTNWAE 289

Query: 364 VKRSTVDIKPPEGLEYKKWD 383
           V +  V++KPP+G+E+K+W+
Sbjct: 290 VGKEKVEVKPPDGMEWKEWE 309

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi\|291223048\|ref\|XP_002731519.1\| PREDICTED: SGT1, suppressor of G2 allele of SKP1-like [Saccoglossus kowalevskii]	Back alignment and taxonomy information

>gi\|427781735\|gb\|JAA56319.1\| Putative suppressor of g2 allele of skp1 [Rhipicephalus pulchellus]	Back alignment and taxonomy information

>gi\|427781733\|gb\|JAA56318.1\| Putative suppressor of g2 allele of skp1 [Rhipicephalus pulchellus]	Back alignment and taxonomy information

>gi\|346465733\|gb\|AEO32711.1\| hypothetical protein [Amblyomma maculatum]	Back alignment and taxonomy information

>gi\|224587011\|gb\|ACN58591.1\| Suppressor of G2 allele of SKP1 homolog [Salmo salar]	Back alignment and taxonomy information

>gi\|240848587\|ref\|NP_001155478.1\| suppressor of G2 allele of SKP1-like [Acyrthosiphon pisum] gi\|239790972\|dbj\|BAH72012.1\| ACYPI002538 [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|47228022\|emb\|CAF97651.1\| unnamed protein product [Tetraodon nigroviridis]	Back alignment and taxonomy information

>gi\|426375584\|ref\|XP_004054610.1\| PREDICTED: suppressor of G2 allele of SKP1 homolog isoform 2 [Gorilla gorilla gorilla]	Back alignment and taxonomy information

>gi\|426375582\|ref\|XP_004054609.1\| PREDICTED: suppressor of G2 allele of SKP1 homolog isoform 1 [Gorilla gorilla gorilla]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		384
UNIPROTKB\|Q9Y2Z0		365	SUGT1 "Suppressor of G2 allele	0.468	0.493	0.448	3.3e-40
ZFIN\|ZDB-GENE-041114-56		322	sgut1 "SGT1, suppressor of G2	0.471	0.562	0.463	6.8e-40
UNIPROTKB\|Q2KIK0		338	SUGT1 "Suppressor of G2 allele	0.468	0.532	0.433	7.8e-39
RGD\|1307550		336	Sugt1 "SGT1, suppressor of G2	0.468	0.535	0.428	2.6e-38
MGI\|MGI:1915205		336	Sugt1 "SGT1, suppressor of G2	0.468	0.535	0.413	1.5e-37
FB\|FBgn0265101		178	Sgt1 "suppressor-of-G2-allele-	0.450	0.971	0.443	1.5e-35
DICTYBASE\|DDB_G0269292		387	sugt1 "SGS domain-contantaing	0.466	0.462	0.384	2.9e-32
POMBASE\|SPBC36.12c		379	git7 "SGT1-like protein Git7"	0.471	0.477	0.360	3.5e-27
CGD\|CAL0004941		413	SGT1 [Candida albicans (taxid:	0.463	0.430	0.321	6.6e-26
UNIPROTKB\|Q59X42		413	CaO19.11570 "Putative uncharac	0.463	0.430	0.321	6.6e-26

UNIPROTKB\|Q9Y2Z0 SUGT1 "Suppressor of G2 allele of SKP1 homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 88/196 (44%), Positives = 124/196 (63%)

Query:   201 IRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPID 260
             I+++WYQTE QVV+  +IK  +     V   +  +  +V L PS    + L L L  PI 
Sbjct:   172 IKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKL-PSGE-DYNLKLELLHPII 229

Query:   261 PTTSSFRILGTKIEVKLAKTSDERWSDLEAKEETKAPSA---------PKT-PYKRDWDK 310
             P  S+F++L TKIE+KL K    RW  LE + +   P           P + PY R+WDK
Sbjct:   230 PEQSTFKVLSTKIEIKLKKPEAVRWEKLEGQGDVPTPKQFVADVKNLYPSSSPYTRNWDK 289

Query:   311 VAQQIEDEKK----EGEAALNELFQKIYGEGSDEVRKAMNKSFLESGGTVLSTNWDEVKR 366
             +  +I++E+K    EG+AALN LFQ+IY +GSDEV++AMNKSF+ESGGTVLSTNW +V +
Sbjct:   290 LVGEIKEEEKNEKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGK 349

Query:   367 STVDIKPPEGLEYKKW 382
               V+I PP+ +E+KK+
Sbjct:   350 RKVEINPPDDMEWKKY 365

GO:0005634 "nucleus" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=TAS

GO:0000776 "kinetochore" evidence=TAS

GO:0007067 "mitosis" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0035872 "nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

ZFIN\|ZDB-GENE-041114-56 sgut1 "SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2KIK0 SUGT1 "Suppressor of G2 allele of SKP1 homolog" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|1307550 Sugt1 "SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1915205 Sugt1 "SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

FB\|FBgn0265101 Sgt1 "suppressor-of-G2-allele-of-skp1" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0269292 sugt1 "SGS domain-contantaing protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

POMBASE\|SPBC36.12c git7 "SGT1-like protein Git7" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

CGD\|CAL0004941 SGT1 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q59X42 CaO19.11570 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		384
PLN03088		356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	1e-42
pfam05002		78	pfam05002, SGS, SGS domain	3e-32
COG5091		368	COG5091, SGT1, Suppressor of G2 allele of skp1 and	1e-28
cd06466		84	cd06466, p23_CS_SGT1_like, p23_like domain similar	9e-22
cd06489		84	cd06489, p23_CS_hSgt1_like, p23_like domain simila	7e-19
cd06463		84	cd06463, p23_like, Proteins containing this p23_li	2e-15
cd06488		87	cd06488, p23_melusin_like, p23_like domain similar	1e-11
pfam04969		78	pfam04969, CS, CS domain	1e-11
cd00298		80	cd00298, ACD_sHsps_p23-like, This domain family in	2e-07
cd06465		108	cd06465, p23_hB-ind1_like, p23_like domain found i	2e-06
cd06469		78	cd06469, p23_DYX1C1_like, p23_like domain found in	2e-05
cd06468		92	cd06468, p23_CacyBP, p23_like domain found in prot	1e-04

>gnl\|CDD\|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional	Back alignment and domain information

 Score =  152 bits (385), Expect = 1e-42
 Identities = 78/215 (36%), Positives = 111/215 (51%), Gaps = 24/215 (11%)

Query: 189 TAPPPPTPTVQNIRHNWYQTEKQVVVDALIKQAKAETTQVNIDQN--SVDIVVTLDPSSS 246
            A P   P+    RH +YQ  ++VVV    K   AE   V+  +   SV I V   P   
Sbjct: 145 DATPVVPPSKPKYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEV---PGED 201

Query: 247 TQHRLHLNLYRPIDPTTSSFRILGTKIEVKLAKTSDERWSDLEAKEETKA---------- 296
             H L   L+  I P    + +L TKIE++LAK     W+ LE  +              
Sbjct: 202 AYH-LQPRLFGKIIPDKCKYEVLSTKIEIRLAKAEPITWASLEYGKGPAVLPKPNVSSEV 260

Query: 297 ---PSAPKT-PYKRDWDKVAQQIE----DEKKEGEAALNELFQKIYGEGSDEVRKAMNKS 348
              P+ P +   K DWDK+  +++    DEK +G+AALN+ F++IY    ++ R+AM KS
Sbjct: 261 SQRPAYPSSKKKKDDWDKLEAEVKKEEKDEKLDGDAALNKFFREIYQNADEDTRRAMMKS 320

Query: 349 FLESGGTVLSTNWDEVKRSTVDIKPPEGLEYKKWD 383
           F+ES GTVLSTNW EV    ++  PP+G+E KKW+
Sbjct: 321 FVESNGTVLSTNWKEVGSKKIEGSPPDGMELKKWE 355

Length = 356

>gnl\|CDD\|218373 pfam05002, SGS, SGS domain	Back alignment and domain information

>gnl\|CDD\|227422 COG5091, SGT1, Suppressor of G2 allele of skp1 and related proteins [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|107223 cd06466, p23_CS_SGT1_like, p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)	Back alignment and domain information

>gnl\|CDD\|107239 cd06489, p23_CS_hSgt1_like, p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins	Back alignment and domain information

>gnl\|CDD\|107220 cd06463, p23_like, Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1	Back alignment and domain information

>gnl\|CDD\|107238 cd06488, p23_melusin_like, p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins	Back alignment and domain information

>gnl\|CDD\|218355 pfam04969, CS, CS domain	Back alignment and domain information

>gnl\|CDD\|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins	Back alignment and domain information

>gnl\|CDD\|107222 cd06465, p23_hB-ind1_like, p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins	Back alignment and domain information

>gnl\|CDD\|107226 cd06469, p23_DYX1C1_like, p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1	Back alignment and domain information

>gnl\|CDD\|107225 cd06468, p23_CacyBP, p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		384
PLN03088		356	SGT1, suppressor of G2 allele of SKP1; Provisional	100.0
KOG1309\|consensus		196		100.0
COG5091		368	SGT1 Suppressor of G2 allele of skp1 and related p	100.0
PF05002		82	SGS: SGS domain ; InterPro: IPR007699 This domain	100.0
KOG3260\|consensus		224		99.9
cd00237		106	p23 p23 binds heat shock protein (Hsp)90 and parti	99.86
cd06488		87	p23_melusin_like p23_like domain similar to the C-	99.85
cd06465		108	p23_hB-ind1_like p23_like domain found in human (h	99.83
cd06489		84	p23_CS_hSgt1_like p23_like domain similar to the C	99.81
cd06468		92	p23_CacyBP p23_like domain found in proteins simil	99.75
KOG3158\|consensus		180		99.74
cd06466		84	p23_CS_SGT1_like p23_like domain similar to the C-	99.74
cd06490		87	p23_NCB5OR p23_like domain found in NAD(P)H cytoch	99.65
PF04969		79	CS: CS domain; InterPro: IPR017447 The function of	99.64
cd06463		84	p23_like Proteins containing this p23_like domain	99.62
cd06469		78	p23_DYX1C1_like p23_like domain found in proteins	99.62
cd06493		85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	99.56
cd06467		85	p23_NUDC_like p23_like domain of NUD (nuclear dist	99.55
cd06494		93	p23_NUDCD2_like p23-like NUD (nuclear distribution	99.33
KOG1667\|consensus		320		99.33
cd06492		87	p23_mNUDC_like p23-like NUD (nuclear distribution)	99.22
cd06495		102	p23_NUDCD3_like p23-like NUD (nuclear distribution	99.18
cd00298		80	ACD_sHsps_p23-like This domain family includes the	99.06
KOG2265\|consensus		179		98.66
COG0071		146	IbpA Molecular chaperone (small heat shock protein	98.06
cd06472		92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	98.04
cd06471		93	ACD_LpsHSP_like Group of bacterial proteins contai	97.78
cd06464		88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	97.65
PF00011		102	HSP20: Hsp20/alpha crystallin family This prints e	97.64
KOG4379\|consensus		596		97.08
cd06475		86	ACD_HspB1_like Alpha crystallin domain (ACD) found	97.04
cd06497		86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	97.03
cd06479		81	ACD_HspB7_like Alpha crystallin domain (ACD) found	97.0
cd06526		83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	96.97
PRK10743		137	heat shock protein IbpA; Provisional	96.92
cd06470		90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	96.88
cd06498		84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	96.87
cd06478		83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	96.67
PRK11597		142	heat shock chaperone IbpB; Provisional	96.62
cd06476		83	ACD_HspB2_like Alpha crystallin domain (ACD) found	96.14
cd06481		87	ACD_HspB9_like Alpha crystallin domain (ACD) found	95.74
cd06482		87	ACD_HspB10 Alpha crystallin domain (ACD) found in	94.72
cd06477		83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	94.7
PF08190		328	PIH1: pre-RNA processing PIH1/Nop17	94.45
PF05455		177	GvpH: GvpH; InterPro: IPR008633 This family consis	92.83
cd06480		91	ACD_HspB8_like Alpha-crystallin domain (ACD) found	88.8

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional	Back alignment and domain information

Probab=100.00  E-value=3.1e-60  Score=468.95  Aligned_cols=187  Identities=38%  Similarity=0.711  Sum_probs=168.7

Q ss_pred             CCCCCCcEEEEecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeCceEEE
Q psy5485         196 PTVQNIRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEV  275 (384)
Q Consensus       196 ~~~~k~RyDWyQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~~KIEI  275 (384)
                      +..+++||+|||+.++|+|+||++|++++++.|+|++++|+|++..++  +..|.+.++||++|+|++|+++|.++||||
T Consensus       152 ~~~~~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~--~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei  229 (356)
T PLN03088        152 PSKPKYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPG--EDAYHLQPRLFGKIIPDKCKYEVLSTKIEI  229 (356)
T ss_pred             CCCCccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCC--CcceeecccccccccccccEEEEecceEEE
Confidence            345679999999999999999999999999999999999999987764  678999999999999999999999999999


Q ss_pred             EEEcCCCCCCCcccccccc-------------cCCCCCCC-CCCCCcchhhhhh----hhhhhhchHHHHHHHHHHhCCC
Q psy5485         276 KLAKTSDERWSDLEAKEET-------------KAPSAPKT-PYKRDWDKVAQQI----EDEKKEGEAALNELFQKIYGEG  337 (384)
Q Consensus       276 ~LkKke~~~WprLek~e~~-------------~kp~yPsS-k~kkDWDK~~dEd----EdEe~egdaaLn~lFKkIY~~g  337 (384)
                      +|+|+++.+|++|+..+..             ..|+||+| +.++|||||+.|+    ++|++||+++||+||||||++|
T Consensus       230 ~l~K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~dWdk~~~~~~~e~~~e~~~g~~~~~~~f~~iY~~~  309 (356)
T PLN03088        230 RLAKAEPITWASLEYGKGPAVLPKPNVSSEVSQRPAYPSSKKKKDDWDKLEAEVKKEEKDEKLDGDAALNKFFREIYQNA  309 (356)
T ss_pred             EEecCCCCCccccccCCccccccCCCCCcCcccCCCCCCCCCCCCChhhhhhhhhhhhhccccccchHHHHHHHHHHhcC
Confidence            9999999999999975432             12579988 5568999998664    2334578999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCeecccCcccccCceeecCCCCCccccccCC
Q psy5485         338 SDEVRKAMNKSFLESGGTVLSTNWDEVKRSTVDIKPPEGLEYKKWDS  384 (384)
Q Consensus       338 DDDtKRAMmKSf~ESnGTvLSTNW~EVgkk~ve~~pP~GmE~Kkwe~  384 (384)
                      ||||||||||||+|||||||||||+|||+++||++||+|||+||||+
T Consensus       310 d~d~rram~KSf~eS~gt~lstnw~~v~~~~~e~~pp~g~e~k~~~~  356 (356)
T PLN03088        310 DEDTRRAMMKSFVESNGTVLSTNWKEVGSKKIEGSPPDGMELKKWEY  356 (356)
T ss_pred             CHHHHHHHHHHhhhcCCeEEeccHHHhcCCccccCCCCCCccccCCC
Confidence            99999999999999999999999999999999999999999999985

>KOG1309\|consensus	Back alignment and domain information

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]	Back alignment and domain information

>PF05002 SGS: SGS domain ; InterPro: IPR007699 This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins	Back alignment and domain information

>KOG3260\|consensus	Back alignment and domain information

>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor	Back alignment and domain information

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins	Back alignment and domain information

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins	Back alignment and domain information

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins	Back alignment and domain information

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)	Back alignment and domain information

>KOG3158\|consensus	Back alignment and domain information

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)	Back alignment and domain information

>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins	Back alignment and domain information

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown	Back alignment and domain information

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1	Back alignment and domain information

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1	Back alignment and domain information

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins	Back alignment and domain information

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins	Back alignment and domain information

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins	Back alignment and domain information

>KOG1667\|consensus	Back alignment and domain information

>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins	Back alignment and domain information

>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins	Back alignment and domain information

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins	Back alignment and domain information

>KOG2265\|consensus	Back alignment and domain information

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins	Back alignment and domain information

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	Back alignment and domain information

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)	Back alignment and domain information

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry	Back alignment and domain information

>KOG4379\|consensus	Back alignment and domain information

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins	Back alignment and domain information

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)	Back alignment and domain information

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins	Back alignment and domain information

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)	Back alignment and domain information

>PRK10743 heat shock protein IbpA; Provisional	Back alignment and domain information

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins	Back alignment and domain information

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)	Back alignment and domain information

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20	Back alignment and domain information

>PRK11597 heat shock chaperone IbpB; Provisional	Back alignment and domain information

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins	Back alignment and domain information

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins	Back alignment and domain information

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins	Back alignment and domain information

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins	Back alignment and domain information

>PF08190 PIH1: pre-RNA processing PIH1/Nop17	Back alignment and domain information

>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis []	Back alignment and domain information

>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		384
1rl1_A		114	Solution Structure Of Human Sgt1 Cs Domain Length =		2e-12
2jki_S		90	Complex Of Hsp90 N-terminal And Sgt1 Cs Domain Leng		4e-05
2xcm_C		92	Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord		4e-05

>pdb|1RL1|A Chain A, Solution Structure Of Human Sgt1 Cs Domain Length = 114

Back alignment and structure

Iteration: 1

Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Query: 201 IRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPID 260 I+++WYQTE QVV+ +IK + V + + +V L S + L L L PI Sbjct: 10 IKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKL--PSGEDYNLKLELLHPII 67 Query: 261 PTTSSFRILGTKIEVKLAKTSDERWSDLEAKEETKAP 297 P S+F++L TKIE+KL K RW LE + + P Sbjct: 68 PEQSTFKVLSTKIEIKLKKPEAVRWEKLEGQGDVPTP 104

PyMOL of 1rl1

>pdb|2JKI|S Chain S, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain Length = 90

Back alignment and structure

>pdb|2XCM|C Chain C, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2 Domain Length = 92

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		384
1rl1_A		114	Suppressor of G2 allele of SKP1 homolog; beta sand	2e-22
2xcm_C		92	SGT1-like protein, cytosolic heat shock protein 90	2e-22
1wh0_A		134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	1e-21
1x5m_A		127	Calcyclin-binding protein; CS domain, structural g	4e-16
1ejf_A		125	Progesterone receptor P23; chaperone, CO-chaperone	2e-13
2kmw_A		150	Uncharacterized protein AT3G03773; protein structu	1e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1wgv_A		124	KIAA1068 protein; CS domain, HSP20-like fold, stru	4e-05
2o30_A		131	Nuclear movement protein; MCSG, structural genomic	8e-05
2cg9_X		134	CO-chaperone protein SBA1; chaperone complex, HSP9	9e-04

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Length = 114	Back alignment and structure

 Score = 90.4 bits (224), Expect = 2e-22
 Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 2/103 (1%)

Query: 196 PTVQNIRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNL 255
                I+++WYQTE QVV+  +IK  +     V   +  +  +V L   S   + L L L
Sbjct: 5   THQSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKL--PSGEDYNLKLEL 62

Query: 256 YRPIDPTTSSFRILGTKIEVKLAKTSDERWSDLEAKEETKAPS 298
             PI P  S+F++L TKIE+KL K    RW  LE + +   P 
Sbjct: 63  LHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLEGQGDVPTPK 105

PyMOL of 1rl1

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Length = 92	Back alignment and structure

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Length = 134	Back alignment and structure

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 127	Back alignment and structure

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Length = 125	Back alignment and structure

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Length = 150	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Length = 124	Back alignment and structure

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Length = 131	Back alignment and structure

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Length = 134	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		384
2kmw_A		150	Uncharacterized protein AT3G03773; protein structu	99.87
1ejf_A		125	Progesterone receptor P23; chaperone, CO-chaperone	99.87
2cg9_X		134	CO-chaperone protein SBA1; chaperone complex, HSP9	99.84
2xcm_C		92	SGT1-like protein, cytosolic heat shock protein 90	99.84
1x5m_A		127	Calcyclin-binding protein; CS domain, structural g	99.83
1wh0_A		134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	99.8
1rl1_A		114	Suppressor of G2 allele of SKP1 homolog; beta sand	99.8
2o30_A		131	Nuclear movement protein; MCSG, structural genomic	99.77
1wgv_A		124	KIAA1068 protein; CS domain, HSP20-like fold, stru	99.68
1wfi_A		131	Nuclear distribution gene C homolog; NUDC, riken s	99.62
2rh0_A		157	NUDC domain-containing protein 2; 13542905, nuclea	99.59
2jtt_C		35	Calcyclin-binding protein; S100A6, SIAH-1 interact	99.58
3qor_A		121	Nuclear migration protein NUDC; beta-sandwich, cha	99.54
3gla_A		100	Low molecular weight heat shock protein; HSPA, SHP	98.32
4fei_A		102	Heat shock protein-related protein; stress respons	98.25
3aab_A		123	Putative uncharacterized protein ST1653; alpha-cry	98.08
1gme_A		151	Heat shock protein 16.9B; small heat shock protein	97.84
4eld_A		161	MJ16.5-P1, small heat shock protein HSP16.5; chape	97.81
2wj5_A		101	Heat shock protein beta-6; chaperone, disulfide bo	97.72
2k8q_A		134	Protein SHQ1; beta-sandwich, CS domain, nucleus, s	97.67
3l1e_A		106	Alpha-crystallin A chain; lens transparency, polyd	97.62
3q9p_A		85	Heat shock protein beta-1; alpha-crystallin domain	97.48
3eud_A		115	Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A	97.45
2y1y_A		90	Alpha-crystallin B chain,; small heat shock protei	97.25
2klr_A		175	Alpha-crystallin B chain; protein, dimer, oligomer	97.13
2bol_A		314	TSP36, small heat shock protein; A-crystallin, mol	96.91
2bol_A		314	TSP36, small heat shock protein; A-crystallin, mol	93.56

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}	Back alignment and structure

Probab=99.87  E-value=5.1e-23  Score=182.17  Aligned_cols=109  Identities=19%  Similarity=0.256  Sum_probs=94.9

Q ss_pred             CcEEEEecCCEEEEEEEeCCCCCCCcEEEEe-ccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeCceEEEEEEc
Q psy5485         201 IRHNWYQTEKQVVVDALIKQAKAETTQVNID-QNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLAK  279 (384)
Q Consensus       201 ~RyDWyQT~d~VtItI~lKgV~kEdVkVeft-e~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~~KIEI~LkK  279 (384)
                      |+|+||||.+.|+|+|+++++  +++.|+|+ +++|+|++.+.  +++.|.++|+||++|+|+ |++++++++|+|+|+|
T Consensus         5 P~~~W~Qt~~~V~ltI~l~~~--~~v~V~~~~~~~l~~~~~~~--~~~~y~~~l~L~~~Idpe-S~~~v~~~kIei~L~K   79 (150)
T 2kmw_A            5 PEVLWAQRSDKVYLTVALPDA--KDISVKCEPQGLFSFSALGA--QGERFEFSLELYGKIMTE-YRKNVGLRNIIFSIQK   79 (150)
T ss_dssp             CCEEEEECSSEEEEEECCSSE--EEEEECCCTTEEEEEEEETT--TTEEEEEEEEBSSCEEEE-EEEEEESSSEEEEEEE
T ss_pred             CcEEEEeCCCEEEEEEEeCCC--CceEEEEecCCEEEEEEEcC--CCceEEEEeEhhhccccc-ceEEecCCEEEEEEEE
Confidence            689999999999999999987  68999999 78999998733  367899999999999999 9999999999999999


Q ss_pred             CCCCCCCcccccccccCCCCCCCCCCCCcchhhhhhhhhh
Q psy5485         280 TSDERWSDLEAKEETKAPSAPKTPYKRDWDKVAQQIEDEK  319 (384)
Q Consensus       280 ke~~~WprLek~e~~~kp~yPsSk~kkDWDK~~dEdEdEe  319 (384)
                      +++.+|++|++.+.+ .++|.    ++|||||.+|+++|+
T Consensus        80 ~e~~~W~rL~k~~~K-~~~~l----k~Dwdkw~dedeeee  114 (150)
T 2kmw_A           80 EERSWWTRLLKSEEK-PAPYI----KVDWNKWCDEDEEVN  114 (150)
T ss_dssp             CCSSCCSCSBSCCSS-CCTTE----EECSSSSCCSSCCCC
T ss_pred             CCCCcCcccccCCcc-cCccc----cccchhcCCchhccc
Confidence            999999999987542 13444    789999999875554

PyMOL of 2kmw

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2	Back alignment and structure

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}	Back alignment and structure

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*	Back alignment and structure

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3	Back alignment and structure

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3	Back alignment and structure

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}	Back alignment and structure

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4	Back alignment and structure

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4	Back alignment and structure

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}	Back alignment and structure

>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}	Back alignment and structure

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A	Back alignment and structure

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A	Back alignment and structure

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}	Back alignment and structure

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A	Back alignment and structure

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A	Back alignment and structure

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A	Back alignment and structure

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}	Back alignment and structure

>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A	Back alignment and structure

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A	Back alignment and structure

>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}	Back alignment and structure

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A	Back alignment and structure

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A	Back alignment and structure

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}	Back alignment and structure

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		384
d1wh0a_		134	b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolas	4e-21
d1rl1a_		92	b.15.1.3 (A:) Suppressor of G2 allele of skp1 homo	8e-18
d1ejfa_		110	b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapien	2e-10
d1wgva_		124	b.15.1.4 (A:) NudC domain containing protein 3, NU	4e-09

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 134	Back information, alignment and structure


class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (213), Expect = 4e-21
 Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 12/128 (9%)

Query: 187 AGTAPPPPTPTVQNIRHNWYQT-EKQVVVDALIKQAKAETTQVNIDQNSVDIVV------ 239
           +G   P     +  ++++ Y+     VVV   +K+   +T++V   +    ++       
Sbjct: 6   SGVDEPESMVNLAFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGN 65

Query: 240 ----TLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLAKTSDERWSDLEAKEE-T 294
                      T  R  + L   I+P   +F    ++I++ L K   +RW  LEA     
Sbjct: 66  FLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCFTASRIDICLRKRQSQRWGGLEAPAARV 125

Query: 295 KAPSAPKT 302
              S P +
Sbjct: 126 GGASGPSS 133

PyMOL of d1wh0a_

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Length = 92	Back information, alignment and structure

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Length = 110	Back information, alignment and structure

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Length = 124	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		384
d1rl1a_		92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	99.86
d1wh0a_		134	Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H	99.83
d1ejfa_		110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	99.8
d1wgva_		124	NudC domain containing protein 3, NUDCD3 (KIAA1068	99.57
d1wfia_		131	Nuclear migration protein nudC {Mouse (Mus musculu	99.27
d1shsa_		115	Small heat shock protein {Archaeon Methanococcus j	97.67
d1gmea_		150	Small heat shock protein {Wheat (Triticum aestivum	97.67

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.7e-22  Score=158.70  Aligned_cols=91  Identities=37%  Similarity=0.681  Sum_probs=85.6

Q ss_pred             CCCcEEEEecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeCceEEEEEE
Q psy5485         199 QNIRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLA  278 (384)
Q Consensus       199 ~k~RyDWyQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~~KIEI~Lk  278 (384)
                      +++||+|+|+++.|+|+|+++++.++++.|+|++++|+|.+...+  +..|.++++||++|+|++|+|++.+++|+|+|+
T Consensus         1 sk~ry~W~Qt~~~V~i~i~~~~~~~~~v~v~~~~~~l~v~~~~~~--~~~y~~~~~L~~~I~p~~s~~~~~~~kiei~L~   78 (92)
T d1rl1a_           1 SKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPS--GEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLK   78 (92)
T ss_dssp             CCCCEEEEECSSEEEEEECCCSCCGGGEEEECSSSCEEEEEECTT--SSEEEEEECBSSCCCGGGEEEEECSSSEEEEEE
T ss_pred             CCCceeEEeCCCEEEEEEEeCCCChHheEEEEecCEEEEEEEcCC--CcEEEEEEEcCcccCchhcEEEEeCCEEEEEEE
Confidence            368999999999999999999999999999999999999987654  788999999999999999999999999999999


Q ss_pred             cCCCCCCCccccc
Q psy5485         279 KTSDERWSDLEAK  291 (384)
Q Consensus       279 Kke~~~WprLek~  291 (384)
                      |+++++|++|+++
T Consensus        79 K~~~~~W~~L~~~   91 (92)
T d1rl1a_          79 KPEAVRWEKLEGQ   91 (92)
T ss_dssp             CSSCCCCSSSBTT
T ss_pred             ECCCCcCcCcccC
Confidence            9999999999875

PyMOL of d1rl1a_

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}	Back information, alignment and structure