Psyllid ID: psy5492

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
MLPFRNREIDGALHSLSCEGAQAVLGGMSHHSDENMLIASSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMRTCWQKDTYHKTVLHIKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQDPTVLHIKERKEMEDAFKKAQKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICILKCCYSRLPQIYEEFYHTINNADHEKDLKWWSNNHGVNMAMNWPQFEVRLSYHSP
ccccccccccccccccccccccccccccccccccHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccEEEEEccccc
cccccccHHcHHHHHccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccEEEHHHcccccccHHHHHHHHHHHccccHHHHHHHHccccccccccccEEEEEEEcccc
mlpfrnreidgalhsLSCEGAQAvlggmshhsdenmliassdsfwepgnykrttkRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMRTCWQKDTYHKTVLHIKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAersasnqernasadsslSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNsynpkymedmSVVFDKCQEMETTRLQFFKDSLFSIHKclnisqdptvlHIKERKEMEDAFKKAQKPWCKTVLHIKERKEMEDAFKkaqkpwciMQHLKLICILKCCYSRLPQIYEEFYHTinnadhekdlkwwsnnhgvnmamnwpQFEVRLSYHSP
MLPFRNREIDGALHSLSCEGAQAVLGGMSHHSDENMLIassdsfwepgnYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMRTCWQKDTYHKTVLHIKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKaersasnqernasadsslsmdQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQDPTVLHIKERKEMEDafkkaqkpwckTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICILKCCYSRLPQIYEEFYHTINNADHEKDLKWWSNNHGVNMAMNWPQFEVRLSYHSP
MLPFRNREIDGALHSLSCEGAQAVLGGMSHHSDENMLIASSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMRTCWQKDTYHKTVLHIKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRvqkakeevqkakekYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQDPTVLHIKERKEMEDAFKKAQKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICILKCCYSRLPQIYEEFYHTINNADHEKDLKWWSNNHGVNMAMNWPQFEVRLSYHSP
************************************LIASSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMRTCWQKDTYHKTVLHIKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVAC************************************************LQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQDPTVLHIKER****DAFKKAQKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICILKCCYSRLPQIYEEFYHTINNADHEKDLKWWSNNHGVNMAMNWPQFEVRL*****
******************************************SFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNK************************************KKA******************************************************************YELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQDPTVLHIKERKEMEDAFKKAQKPWCKTVLHIK******************************************************************AMNWPQFEVRLS*H**
MLPFRNREIDGALHSLSCEGAQAVLGGMSHHSDENMLIASSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMRTCWQKDTYHKTVLHIKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKA**************************************AKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQDPTVLHIKERKEMEDAFKKAQKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICILKCCYSRLPQIYEEFYHTINNADHEKDLKWWSNNHGVNMAMNWPQFEVRLSYHSP
*LPFRNREIDGALHSL**************************SFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMRTCWQKDTYHKTVLHIKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQDPTVLHIKERKEMEDAFKKAQKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICILKCCYSRLPQIYEEFYHTINNADHEKDLKWWSNNHGVNMAMNWPQFEVRLSYH**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLPFRNREIDGALHSLSCEGAQAVLGGMSHHSDENMLIASSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMRTCWQKDTYHKTVLHIKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQDPTVLHIKERKEMEDAFKKAQKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICILKCCYSRLPQIYEEFYHTINNADHEKDLKWWSNNHGVNMAMNWPQFEVRLSYHSP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query361 2.2.26 [Sep-21-2011]
Q5R411444 Protein kinase C and case yes N/A 0.659 0.536 0.410 5e-54
Q9BY11444 Protein kinase C and case yes N/A 0.659 0.536 0.410 6e-54
Q9DDA9 477 Protein kinase C and case N/A N/A 0.728 0.551 0.356 9e-54
Q61644441 Protein kinase C and case yes N/A 0.623 0.510 0.418 4e-53
A7MBI0444 Protein kinase C and case no N/A 0.659 0.536 0.407 6e-53
O13154448 Protein kinase C and case no N/A 0.659 0.531 0.426 9e-53
Q9QY17 488 Protein kinase C and case yes N/A 0.659 0.487 0.419 1e-52
Q9Z0W5441 Protein kinase C and case no N/A 0.623 0.510 0.415 1e-52
Q9WVE8 486 Protein kinase C and case no N/A 0.659 0.489 0.415 7e-52
Q99JB8424 Protein kinase C and case no N/A 0.567 0.483 0.420 9e-51
>sp|Q5R411|PACN1_PONAB Protein kinase C and casein kinase substrate in neurons protein 1 OS=Pongo abelii GN=Pacsin1 PE=2 SV=1 Back     alignment and function desciption
 Score =  211 bits (538), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 115/280 (41%), Positives = 166/280 (59%), Gaps = 42/280 (15%)

Query: 28  MSHHSDENMLIA--SSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSL 85
           MS   DE  L    ++DSFWE GNYKRT KRI+DG++LCNDL+  +QERA IEKAY + L
Sbjct: 1   MSSSYDEASLAPEETTDSFWEVGNYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQL 60

Query: 86  KGWNKKWNELIEK-------------VMRTC------------------------WQKDT 108
             W K+W +LIEK             +M                           WQKD 
Sbjct: 61  TDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVKNWQKDA 120

Query: 109 YHKTVLH-IKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASAD 167
           YHK ++   KE KE ED F+KAQKPW K + ++   K  YH+ACK E+ A  +E N+ ++
Sbjct: 121 YHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREMNSKSE 180

Query: 168 SSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETT 227
            S++ +Q KK+QD+V K K++VQK +EKYE  L+++    P+YME+M  VF++CQ+ E  
Sbjct: 181 QSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLEDVGKTTPQYMENMEQVFEQCQQFEEK 240

Query: 228 RLQFFKDSLFSIHKCLNISQDPTVLHIKERKEMEDAFKKA 267
           RL F K+ L  I + LN++++ + +H+   +E+E A + A
Sbjct: 241 RLVFLKEVLLDIKRHLNLAENSSYIHV--YRELEQAIRGA 278
May play a role in vesicle formation and transport.
Pongo abelii (taxid: 9601)
>sp|Q9BY11|PACN1_HUMAN Protein kinase C and casein kinase substrate in neurons protein 1 OS=Homo sapiens GN=PACSIN1 PE=1 SV=1 Back     alignment and function description
>sp|Q9DDA9|PACN2_XENLA Protein kinase C and casein kinase substrate in neurons protein 2 OS=Xenopus laevis GN=pacsin2 PE=2 SV=1 Back     alignment and function description
>sp|Q61644|PACN1_MOUSE Protein kinase C and casein kinase substrate in neurons protein 1 OS=Mus musculus GN=Pacsin1 PE=1 SV=1 Back     alignment and function description
>sp|A7MBI0|PACN1_BOVIN Protein kinase C and casein kinase substrate in neurons protein 1 OS=Bos taurus GN=PACSIN1 PE=2 SV=1 Back     alignment and function description
>sp|O13154|PACN2_CHICK Protein kinase C and casein kinase substrate in neurons protein 2 OS=Gallus gallus GN=PACSIN2 PE=2 SV=1 Back     alignment and function description
>sp|Q9QY17|PACN2_RAT Protein kinase C and casein kinase substrate in neurons 2 protein OS=Rattus norvegicus GN=Pacsin2 PE=1 SV=2 Back     alignment and function description
>sp|Q9Z0W5|PACN1_RAT Protein kinase C and casein kinase substrate in neurons protein 1 OS=Rattus norvegicus GN=Pacsin1 PE=1 SV=1 Back     alignment and function description
>sp|Q9WVE8|PACN2_MOUSE Protein kinase C and casein kinase substrate in neurons protein 2 OS=Mus musculus GN=Pacsin2 PE=1 SV=1 Back     alignment and function description
>sp|Q99JB8|PACN3_MOUSE Protein kinase C and casein kinase II substrate protein 3 OS=Mus musculus GN=Pacsin3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
193700031 477 PREDICTED: protein kinase C and casein k 0.634 0.480 0.729 1e-106
328706265439 PREDICTED: protein kinase C and casein k 0.634 0.521 0.729 1e-106
242005250 486 protein kinase C and casein kinase subst 0.728 0.541 0.550 3e-94
307187113 482 Protein kinase C and casein kinase subst 0.634 0.475 0.661 1e-93
345493386446 PREDICTED: protein kinase C and casein k 0.634 0.513 0.661 2e-93
340721477 483 PREDICTED: protein kinase C and casein k 0.634 0.474 0.661 4e-93
332023468 481 Protein kinase C and casein kinase subst 0.634 0.476 0.654 2e-92
270005457 473 hypothetical protein TcasGA2_TC007515 [T 0.634 0.484 0.646 4e-92
189236346 4547 PREDICTED: similar to dynein, axonemal, 0.634 0.050 0.650 5e-92
322790260 481 hypothetical protein SINV_10327 [Solenop 0.634 0.476 0.646 3e-91
>gi|193700031|ref|XP_001947818.1| PREDICTED: protein kinase C and casein kinase substrate in neurons protein 2-like isoform 1 [Acyrthosiphon pisum] gi|328706263|ref|XP_003243046.1| PREDICTED: protein kinase C and casein kinase substrate in neurons protein 2-like isoform 2 [Acyrthosiphon pisum] gi|328706267|ref|XP_003243048.1| PREDICTED: protein kinase C and casein kinase substrate in neurons protein 2-like isoform 4 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/266 (72%), Positives = 216/266 (81%), Gaps = 37/266 (13%)

Query: 28  MSHHSDENMLIASSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKG 87
           MSHHSD+NMLIASSDSFWEPGN+KRTTKRIEDGY+LCNDLI LIQER+DIEKAY+KSLKG
Sbjct: 1   MSHHSDDNMLIASSDSFWEPGNHKRTTKRIEDGYRLCNDLITLIQERSDIEKAYSKSLKG 60

Query: 88  WNKKWNELIEK-----------------VMRTC--------------------WQKDTYH 110
           W+KKWNE+IEK                   R C                    WQKD YH
Sbjct: 61  WSKKWNEIIEKGPEYGTTEAAWKGVLVEADRLCDLHIRVKDDLCNDIMQQVKTWQKDNYH 120

Query: 111 KTVLHIKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSL 170
           KTVLHIKERKEME++FKKAQKPWCKLLTKVNKTKN+YH+ACKAE+SASNQERNASADSSL
Sbjct: 121 KTVLHIKERKEMEESFKKAQKPWCKLLTKVNKTKNEYHIACKAEKSASNQERNASADSSL 180

Query: 171 SMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQ 230
           SMDQ+KKMQDRV K+KEEVQKAKEKYE+ALQELN+YNPKYMEDM+VVFD+CQE E  RLQ
Sbjct: 181 SMDQVKKMQDRVAKSKEEVQKAKEKYEMALQELNAYNPKYMEDMTVVFDRCQETEARRLQ 240

Query: 231 FFKDSLFSIHKCLNISQDPTVLHIKE 256
           FFKD+LF+IHKCLN+SQDP +  I E
Sbjct: 241 FFKDTLFTIHKCLNVSQDPVLPQIYE 266

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328706265|ref|XP_003243047.1| PREDICTED: protein kinase C and casein kinase substrate in neurons protein 2-like isoform 3 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242005250|ref|XP_002423484.1| protein kinase C and casein kinase substrate in neurons protein, putative [Pediculus humanus corporis] gi|212506572|gb|EEB10746.1| protein kinase C and casein kinase substrate in neurons protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|307187113|gb|EFN72357.1| Protein kinase C and casein kinase substrate in neurons protein 2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|345493386|ref|XP_003427062.1| PREDICTED: protein kinase C and casein kinase substrate in neurons protein 2-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|340721477|ref|XP_003399146.1| PREDICTED: protein kinase C and casein kinase substrate in neurons protein 2-like isoform 1 [Bombus terrestris] gi|350404814|ref|XP_003487229.1| PREDICTED: protein kinase C and casein kinase substrate in neurons protein 2-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|332023468|gb|EGI63711.1| Protein kinase C and casein kinase substrate in neurons protein 2 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|270005457|gb|EFA01905.1| hypothetical protein TcasGA2_TC007515 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|189236346|ref|XP_975424.2| PREDICTED: similar to dynein, axonemal, heavy polypeptide 1 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|322790260|gb|EFZ15259.1| hypothetical protein SINV_10327 [Solenopsis invicta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
FB|FBgn0053094 494 Synd "Syndapin" [Drosophila me 0.423 0.309 0.568 4.8e-64
UNIPROTKB|Q1G1I6437 PACSIN3 "PACSIN 3" [Gallus gal 0.396 0.327 0.479 1.6e-53
RGD|69411 488 Pacsin2 "protein kinase C and 0.473 0.350 0.414 1.8e-42
UNIPROTKB|Q1RMR9 486 PACSIN2 "Protein kinase C and 0.473 0.351 0.414 2.8e-42
MGI|MGI:1345153 486 Pacsin2 "protein kinase C and 0.473 0.351 0.409 4.6e-42
UNIPROTKB|O13154448 PACSIN2 "Protein kinase C and 0.523 0.421 0.386 7.5e-42
UNIPROTKB|E1C007 485 PACSIN2 "Protein kinase C and 0.523 0.389 0.386 9.5e-42
UNIPROTKB|Q9BY11444 PACSIN1 "Protein kinase C and 0.584 0.475 0.359 1.5e-41
UNIPROTKB|F6U236402 PACSIN1 "Protein kinase C and 0.584 0.524 0.359 1.5e-41
UNIPROTKB|F1SJR5 486 PACSIN2 "Uncharacterized prote 0.473 0.351 0.409 2.5e-41
FB|FBgn0053094 Synd "Syndapin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 464 (168.4 bits), Expect = 4.8e-64, Sum P(2) = 4.8e-64
 Identities = 87/153 (56%), Positives = 109/153 (71%)

Query:   104 WQKDTYHKTVLHIKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERN 163
             WQK+ YH T++ IKERK++ED FKKAQKPW KLL KV K K DYH ACK ERSA+NQERN
Sbjct:   114 WQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERN 173

Query:   164 ASADSSLSMDQLKKMQDRXXXXXXXXXXXXXXYELALQELNSYNPKYMEDMSVVFDKCQE 223
             A+ADSSLS DQ+KKM DR              YE A+ E+  YN  Y+EDM+ VF+KCQ 
Sbjct:   174 ANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAIAEITKYNSVYIEDMTSVFEKCQT 233

Query:   224 METTRLQFFKDSLFSIHKCLNISQDPTVLHIKE 256
              E TRLQFFK+ LF++H CL++++  ++  I E
Sbjct:   234 FEKTRLQFFKEILFNVHSCLDLTKVQSLPQIYE 266
GO:0048488 "synaptic vesicle endocytosis" evidence=NAS
GO:0007269 "neurotransmitter secretion" evidence=NAS
UNIPROTKB|Q1G1I6 PACSIN3 "PACSIN 3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|69411 Pacsin2 "protein kinase C and casein kinase substrate in neurons 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q1RMR9 PACSIN2 "Protein kinase C and casein kinase substrate in neurons 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1345153 Pacsin2 "protein kinase C and casein kinase substrate in neurons 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|O13154 PACSIN2 "Protein kinase C and casein kinase substrate in neurons protein 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C007 PACSIN2 "Protein kinase C and casein kinase substrate in neurons protein 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BY11 PACSIN1 "Protein kinase C and casein kinase substrate in neurons protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F6U236 PACSIN1 "Protein kinase C and casein kinase substrate in neurons protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SJR5 PACSIN2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
cd07655258 cd07655, F-BAR_PACSIN, The F-BAR (FES-CIP4 Homolog 2e-95
cd07681258 cd07681, F-BAR_PACSIN3, The F-BAR (FES-CIP4 Homolo 2e-68
cd07680258 cd07680, F-BAR_PACSIN1, The F-BAR (FES-CIP4 Homolo 2e-62
cd07679258 cd07679, F-BAR_PACSIN2, The F-BAR (FES-CIP4 Homolo 3e-58
pfam0061191 pfam00611, FCH, Fes/CIP4, and EFC/F-BAR homology d 8e-11
cd07651236 cd07651, F-BAR_PombeCdc15_like, The F-BAR (FES-CIP 1e-09
cd07647239 cd07647, F-BAR_PSTPIP, The F-BAR (FES-CIP4 Homolog 2e-08
cd07653251 cd07653, F-BAR_CIP4-like, The F-BAR (FES-CIP4 Homo 4e-08
smart0005587 smart00055, FCH, Fes/CIP4 homology domain 2e-06
cd07610191 cd07610, FCH_F-BAR, The Extended FES-CIP4 Homology 5e-06
cd07658239 cd07658, F-BAR_NOSTRIN, The F-BAR (FES-CIP4 Homolo 1e-05
cd07655258 cd07655, F-BAR_PACSIN, The F-BAR (FES-CIP4 Homolog 6e-04
cd07655258 cd07655, F-BAR_PACSIN, The F-BAR (FES-CIP4 Homolog 0.002
cd07671242 cd07671, F-BAR_PSTPIP1, The F-BAR (FES-CIP4 Homolo 0.004
>gnl|CDD|153339 cd07655, F-BAR_PACSIN, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins Back     alignment and domain information 
 Score =  284 bits (728), Expect = 2e-95
 Identities = 132/244 (54%), Positives = 160/244 (65%), Gaps = 38/244 (15%)

Query: 44  FWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEK----- 98
           FWE GNYKRT KRIEDG+KLC+DL+ ++QERA+IEKAYAK LK W KKW +LIEK     
Sbjct: 1   FWEVGNYKRTVKRIEDGHKLCDDLMKMVQERAEIEKAYAKKLKEWAKKWRDLIEKGPEYG 60

Query: 99  ------------VMRTC--------------------WQKDTYHKTVL-HIKERKEMEDA 125
                         R                      WQK+ YHK+++   KE KE ED 
Sbjct: 61  TLETAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQKENYHKSMMGGFKETKEAEDG 120

Query: 126 FKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKA 185
           F KAQKPW KLL KV K K  YH ACKAE+SA  QE NA +D+SLS DQ+KK+QD+V+K 
Sbjct: 121 FAKAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKC 180

Query: 186 KEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNI 245
           K+EV K K+KYE AL++LN YNP+YMEDM  VFDKCQE E  RL FFK+ L S H+ L++
Sbjct: 181 KQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQEFEEKRLDFFKEILLSYHRHLDL 240

Query: 246 SQDP 249
           S +P
Sbjct: 241 STNP 244

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. Length = 258
>gnl|CDD|153365 cd07681, F-BAR_PACSIN3, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3) Back     alignment and domain information
>gnl|CDD|153364 cd07680, F-BAR_PACSIN1, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1) Back     alignment and domain information
>gnl|CDD|153363 cd07679, F-BAR_PACSIN2, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2) Back     alignment and domain information
>gnl|CDD|216021 pfam00611, FCH, Fes/CIP4, and EFC/F-BAR homology domain Back     alignment and domain information
>gnl|CDD|153335 cd07651, F-BAR_PombeCdc15_like, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins Back     alignment and domain information
>gnl|CDD|153331 cd07647, F-BAR_PSTPIP, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins Back     alignment and domain information
>gnl|CDD|153337 cd07653, F-BAR_CIP4-like, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins Back     alignment and domain information
>gnl|CDD|214492 smart00055, FCH, Fes/CIP4 homology domain Back     alignment and domain information
>gnl|CDD|153294 cd07610, FCH_F-BAR, The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes Back     alignment and domain information
>gnl|CDD|153342 cd07658, F-BAR_NOSTRIN, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN) Back     alignment and domain information
>gnl|CDD|153339 cd07655, F-BAR_PACSIN, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins Back     alignment and domain information
>gnl|CDD|153339 cd07655, F-BAR_PACSIN, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins Back     alignment and domain information
>gnl|CDD|153355 cd07671, F-BAR_PSTPIP1, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 361
KOG2856|consensus 472 100.0
cd07679258 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin 100.0
cd07681258 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin 100.0
cd07680258 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin 100.0
cd07673269 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/A 100.0
cd07655258 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/ 100.0
cd07648261 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Am 100.0
cd07674261 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/A 100.0
cd07671242 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin 100.0
cd07647239 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/ 100.0
cd07672240 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin 100.0
cd07651236 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology 100.0
cd07658239 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin 100.0
cd07649233 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Am 100.0
cd07676253 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/A 100.0
cd07653251 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B 100.0
cd07675252 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/ 100.0
cd07650228 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and 99.97
cd07657237 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin 99.96
KOG2398|consensus 611 99.94
cd07686234 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amp 99.93
cd07652234 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Am 99.91
cd07610191 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or 99.91
cd07654264 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/A 99.86
cd07656241 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/A 99.84
cd07678263 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/ 99.83
cd07685237 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amp 99.78
cd07677260 F-BAR_FCHSD2 The F-BAR (FES-CIP4 Homology and Bin/ 99.71
KOG3565|consensus 640 99.7
cd07683253 F-BAR_srGAP1 The F-BAR (FES-CIP4 Homology and Bin/ 99.56
cd07684253 F-BAR_srGAP3 The F-BAR (FES-CIP4 Homology and Bin/ 99.52
cd07682263 F-BAR_srGAP2 The F-BAR (FES-CIP4 Homology and Bin/ 99.5
PF0061191 FCH: Fes/CIP4, and EFC/F-BAR homology domain; Inte 99.5
smart0005587 FCH Fes/CIP4 homology domain. Alignment extended f 99.47
KOG4429|consensus 421 98.6
cd07307194 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri 97.16
PF06730219 FAM92: FAM92 protein; InterPro: IPR009602 This fam 96.02
cd07598211 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of 95.81
cd07634207 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domai 93.37
KOG2856|consensus 472 92.73
cd07636207 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of G 92.48
cd07639200 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of 92.27
cd07658239 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin 91.59
cd07635207 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of 91.19
PF06456229 Arfaptin: Arfaptin-like domain; InterPro: IPR01050 90.23
cd07679258 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin 90.23
cd07606202 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain 89.68
cd07590225 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of B 87.55
cd07602207 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR 87.45
cd07681258 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin 85.95
cd07633207 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of 85.2
PF08397219 IMD: IRSp53/MIM homology domain; InterPro: IPR0136 84.06
cd00011203 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) do 83.54
cd07627216 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of 83.13
cd07603200 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of 82.29
cd07680258 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin 81.87
>KOG2856|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.7e-69  Score=518.42  Aligned_cols=256  Identities=58%  Similarity=0.976  Sum_probs=250.0

Q ss_pred             hccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh----------------
Q psy5492          38 IASSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMR----------------  101 (361)
Q Consensus        38 ~~f~~sFWg~~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~g~l----------------  101 (361)
                      ...+++||++|+|+++++||++|.++|+||+.|++|||.||+.||++|+.||++|++.++.||.                
T Consensus         4 e~~sdsFWEvGnYKrtvKRi~DG~rlc~Dl~~~~qERA~IEk~YaqqL~~wakkWr~lvekgpqyGt~e~aW~~~~teae   83 (472)
T KOG2856|consen    4 EVLSDSFWEVGNYKRTVKRIEDGHRLCNDLMNCSQERARIEKAYAQQLTDWAKKWRQLVEKGPQYGTVEKAWNAFMTEAE   83 (472)
T ss_pred             cccCcccccccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999999999999998764                


Q ss_pred             ---------------------hhHhHHHHHHHhhh-hhHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5492         102 ---------------------TCWQKDTYHKTVLH-IKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASN  159 (361)
Q Consensus       102 ---------------------~aWq~~~~H~qL~~-~KE~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~  159 (361)
                                           .+||+.++|.++++ |||+|++|++|+|+||||++.+++|+++|+.||.+|+++++|..
T Consensus        84 rlS~lH~evKd~L~nd~~e~iktwqK~a~H~~vm~G~KE~ke~ED~FrKAQKPWaK~l~evE~ak~~yh~ack~EksA~~  163 (472)
T KOG2856|consen   84 RLSELHLEVKDNLINDDVEKIKTWQKEAYHKQVMGGFKETKEAEDGFRKAQKPWAKLLKEVEAAKKAYHAACKEEKSALT  163 (472)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHhhhhHHHHhcchhhhHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                 89999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492         160 QERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSI  239 (361)
Q Consensus       160 ~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y  239 (361)
                      ++.++++|++++|+++.||+++++||.++++++++.|+++|..+|++++.|+++|..+|++||++|++|+.||+++|...
T Consensus       164 re~n~kaDsSvspeq~kKlqdrveK~k~evqktkekYektl~el~~yt~~YmE~MeqvFe~CQ~fE~~Rl~Ffkeil~~v  243 (472)
T KOG2856|consen  164 REQNAKADSSVSPEQLKKLQDRVEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQVFEQCQQFEEKRLQFFKEILLKV  243 (472)
T ss_pred             HHhccccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccccCcchhhhhhhHHhHHHHhhhcCCCchhhHHHHhhhhhHHHHhhcCchhHHHhHHHHHHHHhhcCCChhhHHH
Q psy5492         240 HKCLNISQDPTVLHIKERKEMEDAFKKAQKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICILKCCYSRLPQIYE  319 (361)
Q Consensus       240 ~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (361)
                      +.|||++.++                                                               ++++||+
T Consensus       244 ~~hldl~~~~---------------------------------------------------------------~~~~ly~  260 (472)
T KOG2856|consen  244 QRHLDLSRNS---------------------------------------------------------------SYSGLYR  260 (472)
T ss_pred             HHHhhhhhhc---------------------------------------------------------------chHHHHH
Confidence            9999999887                                                               9999999


Q ss_pred             HHHHHHhhCChHhHHHHHHhcCCCCCCCCCcchhhcc
Q psy5492         320 EFYHTINNADHEKDLKWWSNNHGVNMAMNWPQFEVRL  356 (361)
Q Consensus       320 ~~~~~~~~~~~~~dl~~~~~~~g~~~~~~~p~f~~~~  356 (361)
                      +|.|+|+++|.++||+||+++|||||+||||+|++|.
T Consensus       261 eleqsIr~Ad~eeDLrww~s~hG~~mamnWPqF~E~s  297 (472)
T KOG2856|consen  261 ELEQSIRAADAEEDLRWWRSNHGPGMAMNWPQFEEWS  297 (472)
T ss_pred             HHHHHHhccchHHHHHHHHhcCCCccccCCchHhhcC
Confidence            9999999999999999999999999999999999885

>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2) Back     alignment and domain information
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3) Back     alignment and domain information
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1) Back     alignment and domain information
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein Back     alignment and domain information
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins Back     alignment and domain information
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins Back     alignment and domain information
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein Back     alignment and domain information
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1 Back     alignment and domain information
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins Back     alignment and domain information
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2 Back     alignment and domain information
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins Back     alignment and domain information
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN) Back     alignment and domain information
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7 Back     alignment and domain information
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17 Back     alignment and domain information
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins Back     alignment and domain information
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like Back     alignment and domain information
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein Back     alignment and domain information
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases Back     alignment and domain information
>KOG2398|consensus Back     alignment and domain information
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase Back     alignment and domain information
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins Back     alignment and domain information
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes Back     alignment and domain information
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD) Back     alignment and domain information
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins Back     alignment and domain information
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1) Back     alignment and domain information
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase Back     alignment and domain information
>cd07677 F-BAR_FCHSD2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 2 (FCHSD2) Back     alignment and domain information
>KOG3565|consensus Back     alignment and domain information
>cd07683 F-BAR_srGAP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 1 Back     alignment and domain information
>cd07684 F-BAR_srGAP3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 3 Back     alignment and domain information
>cd07682 F-BAR_srGAP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 2 Back     alignment and domain information
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins [] Back     alignment and domain information
>smart00055 FCH Fes/CIP4 homology domain Back     alignment and domain information
>KOG4429|consensus Back     alignment and domain information
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature Back     alignment and domain information
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length Back     alignment and domain information
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92) Back     alignment and domain information
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like Back     alignment and domain information
>KOG2856|consensus Back     alignment and domain information
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase Back     alignment and domain information
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1 Back     alignment and domain information
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN) Back     alignment and domain information
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2 Back     alignment and domain information
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules Back     alignment and domain information
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2) Back     alignment and domain information
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC) Back     alignment and domain information
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3 Back     alignment and domain information
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins Back     alignment and domain information
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3) Back     alignment and domain information
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1 Back     alignment and domain information
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family Back     alignment and domain information
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes Back     alignment and domain information
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p Back     alignment and domain information
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins Back     alignment and domain information
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
3i2w_A290 Crystal Structure Of EfcF-Bar Domain Of Drosophila 2e-69
3i2w_A290 Crystal Structure Of EfcF-Bar Domain Of Drosophila 2e-15
3hah_A325 Crystal Structure Of Human Pacsin1 F-Bar Domain (C2 2e-49
3qni_A307 Crystal Structure Of Human Pacsin 1 F-Bar Domain Le 3e-49
3hai_A308 Crystal Structure Of Human Pacsin1 F-Bar Domain (P2 3e-49
2x3v_A337 Structure Of The F-Bar Domain Of Mouse Syndapin I L 5e-49
3syv_A347 Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant 1e-48
3qe6_A304 Mouse Pacsin 3 F-Bar Domain Structure Length = 304 1e-48
3m3w_A320 Crystal Strcuture Of Mouse Pacsin3 Bar Domain Mutan 5e-48
3lll_A287 Crystal Structure Of Mouse Pacsin2 F-Bar Domain Len 4e-47
3q84_A295 Crystal Structure Of Human Pacsin 1 F-Bar Domain Le 3e-46
3haj_A 486 Crystal Structure Of Human Pacsin2 F-Bar Domain (P2 1e-44
3q0k_A289 Crystal Structure Of Human Pacsin 2 F-Bar Length = 1e-43
3aco_A350 Crystal Structure Of The EfcF-Bar Domain Of Human P 2e-42
3aco_A350 Crystal Structure Of The EfcF-Bar Domain Of Human P 6e-05
3abh_A312 Crystal Structure Of The EfcF-Bar Domain Of Human P 3e-42
3abh_A312 Crystal Structure Of The EfcF-Bar Domain Of Human P 8e-05
>pdb|3I2W|A Chain A, Crystal Structure Of EfcF-Bar Domain Of Drosophila SyndapinPACSIN Length = 290 Back     alignment and structure 
Iteration: 1

 Score =  258 bits (660), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 136/253 (53%), Positives = 159/253 (62%), Gaps = 37/253 (14%)
Query: 41  SDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVM 100
           SDSFWEPGNYKRTTKRIEDGYKLCNDL  LIQERADIEK YAKSL+ W+KKW ELIEK  
Sbjct: 1   SDSFWEPGNYKRTTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSKKWGELIEKGP 60
Query: 101 R-------------------------------------TCWQKDTYHKTVLHIKERKEME 123
                                                   WQK+ YH T+  IKERK++E
Sbjct: 61  EYGTTEAAWKGVLTESERISDVHXKIKDNLCNDVNSQIKTWQKENYHHTLXQIKERKDLE 120
Query: 124 DAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRXX 183
           D FKKAQKPW KLL KV K K DYH ACK ERSA+NQERNA+ADSSLS DQ+KK  DR  
Sbjct: 121 DLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKXHDRVQ 180
Query: 184 XXXXXXXXXXXXYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCL 243
                       YE A+ E+  YN  Y+ED + VF+KCQ  E TRLQFFK+ LF++H CL
Sbjct: 181 KTKDQVQKCREKYEQAIAEITKYNSVYIEDXTSVFEKCQTFEKTRLQFFKEILFNVHSCL 240
Query: 244 NISQDPTVLHIKE 256
           ++++  ++  I E
Sbjct: 241 DLTKVQSLPQIYE 253
>pdb|3I2W|A Chain A, Crystal Structure Of EfcF-Bar Domain Of Drosophila SyndapinPACSIN Length = 290 Back     alignment and structure
>pdb|3HAH|A Chain A, Crystal Structure Of Human Pacsin1 F-Bar Domain (C2 Lattice) Length = 325 Back     alignment and structure
>pdb|3QNI|A Chain A, Crystal Structure Of Human Pacsin 1 F-Bar Domain Length = 307 Back     alignment and structure
>pdb|3HAI|A Chain A, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21 Lattice) Length = 308 Back     alignment and structure
>pdb|2X3V|A Chain A, Structure Of The F-Bar Domain Of Mouse Syndapin I Length = 337 Back     alignment and structure
>pdb|3SYV|A Chain A, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant Length = 347 Back     alignment and structure
>pdb|3QE6|A Chain A, Mouse Pacsin 3 F-Bar Domain Structure Length = 304 Back     alignment and structure
>pdb|3M3W|A Chain A, Crystal Strcuture Of Mouse Pacsin3 Bar Domain Mutant Length = 320 Back     alignment and structure
>pdb|3LLL|A Chain A, Crystal Structure Of Mouse Pacsin2 F-Bar Domain Length = 287 Back     alignment and structure
>pdb|3Q84|A Chain A, Crystal Structure Of Human Pacsin 1 F-Bar Domain Length = 295 Back     alignment and structure
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121 Lattice) Length = 486 Back     alignment and structure
>pdb|3Q0K|A Chain A, Crystal Structure Of Human Pacsin 2 F-Bar Length = 289 Back     alignment and structure
>pdb|3ACO|A Chain A, Crystal Structure Of The EfcF-Bar Domain Of Human Pacsin2SYNDAPIN II (2.7 A) Length = 350 Back     alignment and structure
>pdb|3ACO|A Chain A, Crystal Structure Of The EfcF-Bar Domain Of Human Pacsin2SYNDAPIN II (2.7 A) Length = 350 Back     alignment and structure
>pdb|3ABH|A Chain A, Crystal Structure Of The EfcF-Bar Domain Of Human Pacsin2SYNDAPIN II (2.0 A) Length = 312 Back     alignment and structure
>pdb|3ABH|A Chain A, Crystal Structure Of The EfcF-Bar Domain Of Human Pacsin2SYNDAPIN II (2.0 A) Length = 312 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
3aco_A350 Pacsin2, protein kinase C and casein kinase substr 4e-48
3haj_A 486 Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, 2e-47
3abh_A312 Pacsin2, protein kinase C and casein kinase substr 3e-47
3m3w_A320 Pacsin3, protein kinase C and casein kinase II sub 5e-44
2x3v_A337 Syndapin I, protein kinase C and casein kinase sub 3e-43
3i2w_A290 Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt 2e-42
2efk_A301 CDC42-interacting protein 4; EFC domain, structura 2e-31
2efl_A305 Formin-binding protein 1; EFC domain, structural g 1e-29
4dyl_A406 Tyrosine-protein kinase FES/FPS; structural genomi 2e-24
3g9g_A287 Suppressor of yeast profilin deletion; SYP1, BAR d 8e-21
2v0o_A276 FCHO2, FCH domain only protein 2; lipid-binding pr 8e-18
3qwe_A279 GMIP, GEM-interacting protein; structural genomics 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens} Length = 350 Back     alignment and structure
 Score =  165 bits (418), Expect = 4e-48
 Identities = 112/271 (41%), Positives = 161/271 (59%), Gaps = 39/271 (14%)

Query: 26  GGMSHHSDENMLI-ASSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKS 84
            GMS   D+++ +  SSDSFWE GNYKRT KRI+DG++LC+DL+  + ERA IEKAYA+ 
Sbjct: 6   SGMSVTYDDSVGVEVSSDSFWEVGNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQ 65

Query: 85  LKGWNKKWNELIEKVMR-------------------------------------TCWQKD 107
           L  W ++W +L+EK  +                                       WQK+
Sbjct: 66  LTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKE 125

Query: 108 TYHKTVLH-IKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASA 166
            +HK ++   KE KE ED F+KAQKPW K L +V   K  +H ACK E+ A ++E N+ A
Sbjct: 126 AFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKA 185

Query: 167 DSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMET 226
           D SL+ +QLKK+QD+++K K++V K KEKYE +L+EL+   P+YME+M  VF++CQ+ E 
Sbjct: 186 DPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEE 245

Query: 227 TRLQFFKDSLFSIHKCLNISQDPTVLHIKER 257
            RL+FF++ L  + K L++S       I   
Sbjct: 246 KRLRFFREVLLEVQKHLDLSNVAGYKAIYHD 276
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486 Back     alignment and structure
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A Length = 312 Back     alignment and structure
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3qe6_A Length = 320 Back     alignment and structure
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A Length = 337 Back     alignment and structure
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster} Length = 290 Back     alignment and structure
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4 Length = 301 Back     alignment and structure
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4 Length = 305 Back     alignment and structure
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens} Length = 406 Back     alignment and structure
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae} Length = 287 Back     alignment and structure
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens} Length = 276 Back     alignment and structure
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens} Length = 279 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
3m3w_A320 Pacsin3, protein kinase C and casein kinase II sub 100.0
3abh_A312 Pacsin2, protein kinase C and casein kinase substr 100.0
3aco_A350 Pacsin2, protein kinase C and casein kinase substr 100.0
3i2w_A290 Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt 100.0
3haj_A 486 Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, 100.0
2x3v_A337 Syndapin I, protein kinase C and casein kinase sub 100.0
2efk_A301 CDC42-interacting protein 4; EFC domain, structura 100.0
2v0o_A276 FCHO2, FCH domain only protein 2; lipid-binding pr 100.0
2efl_A305 Formin-binding protein 1; EFC domain, structural g 100.0
4dyl_A 406 Tyrosine-protein kinase FES/FPS; structural genomi 100.0
3g9g_A287 Suppressor of yeast profilin deletion; SYP1, BAR d 99.89
3qwe_A279 GMIP, GEM-interacting protein; structural genomics 99.72
4dyl_A406 Tyrosine-protein kinase FES/FPS; structural genomi 94.05
2ykt_A253 Brain-specific angiogenesis inhibitor 1-associate 89.16
2fic_A251 Bridging integrator 1; BAR domain, homodimer, coil 84.61
1uru_A244 Amphiphysin; endocytosis, coiled-coil, membrane cu 84.39
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A Back     alignment and structure
Probab=100.00  E-value=5.2e-57  Score=439.47  Aligned_cols=262  Identities=44%  Similarity=0.812  Sum_probs=222.8

Q ss_pred             CcchhhccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----Hhhhh-hhHhHH
Q psy5492          33 DENMLIASSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELI----EKVMR-TCWQKD  107 (361)
Q Consensus        33 ~~~~~~~f~~sFWg~~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~----e~g~l-~aWq~~  107 (361)
                      ++.++..+++||||++||++|++|+++|+++|++|.+||+|||.||++||++|.+||++|.+..    +.|++ .+|...
T Consensus         5 ~~~~~~~~~~~FW~~~g~~~l~~~~~~g~~~~~el~~f~keRa~iE~~Yak~L~kLakk~~~~~~~~~e~gsl~~aw~~i   84 (320)
T 3m3w_A            5 EDAGGEVLGGSFWEAGNYRRTVQRVEDGHRLCGDLVSCFQERARIEKAYAQQLADWARKWRGAVEKGPQYGTLEKAWHAF   84 (320)
T ss_dssp             ---------CCTTSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             cCCCcccccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChHHHHHHHH
Confidence            3445678999999999999999999999999999999999999999999999999999986543    23454 455422


Q ss_pred             --------HHH------------------------HHhhh-hhHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492         108 --------TYH------------------------KTVLH-IKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAE  154 (361)
Q Consensus       108 --------~~H------------------------~qL~~-~KE~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee  154 (361)
                              ..|                        ++|++ +|++|+++.+|.++|++|...++.|+|+|++|+.+|+++
T Consensus        85 ~~e~e~~a~~H~~~a~~l~~~v~~~l~~~~k~~~~k~~~~~~ke~K~~~~~~~k~qk~~~~~~~~l~kaKk~Y~~~c~e~  164 (320)
T 3m3w_A           85 FTAAERLSELHLEVREKLHGPDSERVRTWQRGAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDE  164 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    233                        34433 677899999999999999999999999999999999999


Q ss_pred             HHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492         155 RSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKD  234 (361)
Q Consensus       155 ~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~  234 (361)
                      ++++.++..+++++++++++++|++.++.++.+++++++++|..+|..+|.+++.|+++||.+|+.||+||++||.|||+
T Consensus       165 ~~a~~~~~~~~~d~~~s~ke~~K~~~k~~k~~~~~~~a~~~Y~~~l~~~n~~~~~y~~~~~~~~~~~Q~lEe~Ri~~lk~  244 (320)
T 3m3w_A          165 KTAQTRESHAKADSSMSQEQLRKLQERVGRCTKEAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFFKD  244 (320)
T ss_dssp             HHHHHHTTSCCSSCCC---CCSSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98887777777788889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccccCcchhhhhhhHHhHHHHhhhcCCCchhhHHHHhhhhhHHHHhhcCchhHHHhHHHHHHHHhhcCCCh
Q psy5492         235 SLFSIHKCLNISQDPTVLHIKERKEMEDAFKKAQKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICILKCCYSRL  314 (361)
Q Consensus       235 ~L~~y~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (361)
                      +||.|++++++...+                                                               .+
T Consensus       245 ~l~~~~~~~~~~~~~---------------------------------------------------------------~~  261 (320)
T 3m3w_A          245 VLLTLHQHLDLSSSD---------------------------------------------------------------KF  261 (320)
T ss_dssp             HHHHHHHHHCGGGCH---------------------------------------------------------------HH
T ss_pred             HHHHHHHHHccccch---------------------------------------------------------------hH
Confidence            999999999776433                                                               78


Q ss_pred             hhHHHHHHHHHhhCChHhHHHHHHhcCCCCCCCCCcchhhccc
Q psy5492         315 PQIYEEFYHTINNADHEKDLKWWSNNHGVNMAMNWPQFEVRLS  357 (361)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~dl~~~~~~~g~~~~~~~p~f~~~~~  357 (361)
                      +++|++|+++|++||+++||++|++++||||+|+||+||+|..
T Consensus       262 ~~~~e~~~~~i~~id~~~Di~~fi~~~gtG~~p~~p~Fe~y~~  304 (320)
T 3m3w_A          262 HELHRDLQQSIEAASDEEDLRWWRSTHGPGMAMNWPQFEEWSL  304 (320)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHSTTSCCCCCCCCC---
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence            9999999999999999999999999999999999999999854
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A Back     alignment and structure
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens} Back     alignment and structure
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster} Back     alignment and structure
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Back     alignment and structure
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A Back     alignment and structure
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4 Back     alignment and structure
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens} Back     alignment and structure
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4 Back     alignment and structure
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens} Back     alignment and structure
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens} Back     alignment and structure
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A Back     alignment and structure
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A Back     alignment and structure
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 361
d2efla1288 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP 4e-20
d2efka1279 a.238.1.4 (A:10-288) CDC42-interacting protein 4, 7e-18
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 Back     information, alignment and structure

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.2 bits (215), Expect = 4e-20
 Identities = 42/221 (19%), Positives = 77/221 (34%), Gaps = 34/221 (15%)

Query: 50  YKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKV--------MR 101
           +    K  + G  +    I  ++ER +IE +YAK L+  +KK+                 
Sbjct: 11  FDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSC 70

Query: 102 TCWQ-------------------------KDTYHKTVLHIKERKEMEDAFKKAQKPWCKL 136
             +                           D         +ERK      +KAQ+     
Sbjct: 71  KAFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETC 130

Query: 137 LTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKY 196
             ++  +K  +   CK    A        AD +++   ++K + + Q   +  + +K  Y
Sbjct: 131 WKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADY 190

Query: 197 ELALQELNSYNPKYME-DMSVVFDKCQEMETTRLQFFKDSL 236
              LQ+ N    +Y    +  +F K QEME  R+    +S+
Sbjct: 191 SSILQKFNHEQHEYYHTHIPNIFQKIQEMEERRIVRMGESM 231
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 279 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
d2efla1288 Formin-binding protein 1, FNBP1 {Human (Homo sapie 100.0
d2efka1279 CDC42-interacting protein 4, CIP4 {Human (Homo sap 100.0
d1i4da_200 Arfaptin, Rac-binding fragment {Human (Homo sapien 96.91
d1y2oa1248 BAP2/IRSp53 N-terminal domain {Human (Homo sapiens 94.16
d2efla1288 Formin-binding protein 1, FNBP1 {Human (Homo sapie 86.98
d2elba1268 DCC-interacting protein 13-alpha, APPL1 {Human (Ho 86.73
d1i4da_200 Arfaptin, Rac-binding fragment {Human (Homo sapien 84.48
d1urua_217 Amphiphysin {Fruit fly (Drosophila melanogaster) [ 84.17
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-36  Score=276.82  Aligned_cols=250  Identities=19%  Similarity=0.300  Sum_probs=212.3

Q ss_pred             cccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh-------hhh-hhHhHH----
Q psy5492          40 SSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEK-------VMR-TCWQKD----  107 (361)
Q Consensus        40 f~~sFWg~~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~-------g~l-~aWq~~----  107 (361)
                      |+..+|+  ||++|.+|+++|+.+|++|.+||++||.||++||++|.+|++++.+....       |++ .+|...    
T Consensus         3 ~~~~l~d--~~~~l~~~~~~~~~~~~~~~~~~~eRa~iE~eYak~L~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (288)
T d2efla1           3 WGTELWD--QFDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEM   80 (288)
T ss_dssp             HHHHTTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-------CTTSHHHHHHHHHHHHH
T ss_pred             chhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCcHHHHHHHHHHHH
Confidence            4556886  99999999999999999999999999999999999999999998754332       222 566532    


Q ss_pred             ----HHHHHhhh------------h-----hHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhccc
Q psy5492         108 ----TYHKTVLH------------I-----KERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASA  166 (361)
Q Consensus       108 ----~~H~qL~~------------~-----KE~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~  166 (361)
                          ..|..++.            +     +.+|.+.+.+.++++.+......++++|+.|+.+|++.+.+......+..
T Consensus        81 ~~~a~~h~~~a~~l~~~i~~~l~~~~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~~~~~~  160 (288)
T d2efla1          81 NDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDA  160 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence                45655433            1     12377778888999999999999999999999999997766554444455


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Q psy5492         167 DSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPK-YMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCL-N  244 (361)
Q Consensus       167 d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~-yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~l-d  244 (361)
                      +...++++++|+..++.++..++.+|+++|...|..+|..+.. |.++||.+++.||.+|+.|+.+|+++|..|+... +
T Consensus       161 ~~~~~~~~~~K~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~~q~~e~~r~~~~k~~l~~~~~~~~~  240 (288)
T d2efla1         161 DINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEERRIVRMGESMKTYAEVDRQ  240 (288)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6678899999999999999999999999999999999998875 6789999999999999999999999999999887 3


Q ss_pred             cccCcchhhhhhhHHhHHHHhhhcCCCchhhHHHHhhhhhHHHHhhcCchhHHHhHHHHHHHHhhcCCChhhHHHHHHHH
Q psy5492         245 ISQDPTVLHIKERKEMEDAFKKAQKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICILKCCYSRLPQIYEEFYHT  324 (361)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (361)
                      +.  +                                                               .+.+.++.+..+
T Consensus       241 ~~--~---------------------------------------------------------------~~~~~~~~l~~~  255 (288)
T d2efla1         241 VI--P---------------------------------------------------------------IIGKCLDGIVKA  255 (288)
T ss_dssp             HH--H---------------------------------------------------------------HHHHHHHHHHHH
T ss_pred             Hh--h---------------------------------------------------------------hHHHHHHHHHHH
Confidence            32  1                                                               577789999999


Q ss_pred             HhhCChHhHHHHHHhcCCCCCCCCCc-chhhcc
Q psy5492         325 INNADHEKDLKWWSNNHGVNMAMNWP-QFEVRL  356 (361)
Q Consensus       325 ~~~~~~~~dl~~~~~~~g~~~~~~~p-~f~~~~  356 (361)
                      ++++|++.|+..|++.+|+|+++|.| +||+|.
T Consensus       256 ~~~id~~~D~~~fi~~~~t~~~~p~~~~fe~y~  288 (288)
T d2efla1         256 AESIDQKNDSQLVIEAYKSGFEPPGDIEFEDYT  288 (288)
T ss_dssp             HHTCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_pred             HHHCCHHHHHHHHHHHcCCCCCCCCCCCCcCCC
Confidence            99999999999999999999988888 799873
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure