Psyllid ID: psy5495

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
MSWYCGGGFLLIGNNKGRTGVFGIFNNTYNMYLEFEYPKIVNEYERKYATGCFSDIENEDKDTKEQDVLAVTYQPKLSTFEMDIMEEHKIEVLFLGQVYHVYPKGPQYTVVDQGKDSDFDFSTDRPWEVPFLARNRPWEKNKKKIPIEPIKDWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQFIIKQEAPLLVTNEVALVDPSDRMGCQVEWRYTEAGDRVRVSKRSGRIIPIPMAAYETHDYKTPGTYKVTEI
ccEEEcccEEEEEcccccEEEEEEEcccEEEEEEEEccHHHHHHHHHHcccccccccccccccccccEEEEEEEccccEEEEHHHHHccHHHHHHccEEEccccccccccccccccccEEccccccccHHHHHccccccccccccccccccccEEEcccEEEEEEccccccEEEEEEEEccccEEEEEccEEEEEEEcccccEEEEEEcEEEcccEEEEcccccccEEEEEEEEccccEEEEEcccccccccccccccccccccccccccccc
ccccccccEEEEEcccccccEEEEEcccccEEEEEcccHHHHHHHHHHcccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHEEEcccccccccccccEEcccEEccccccccHHHHHHcccccccccccccccHHcEEEEcccEEEEEEEccccccEEEEEEEccccEEEEEcEEEEEEcccccccEEEEEccEEEcccEEEEcccccccEEEEEEEEccccEEEEEEEcccEcccccHccccccccccccEEEEcc
mswycgggfllignnkgrtgvfgIFNNTynmylefeypkIVNEYERKYAtgcfsdienedkdtkeQDVLAVtyqpklstFEMDIMEEHKIEVLFLGqvyhvypkgpqytvvdqgkdsdfdfstdrpwevpflarnrpweknkkkipiepikdwsifkgdRVEIlvgkdkgkqgYVIQIFQEINSVIVEGLNTYLKkmgdsqfiikqeapllvtnevalvdpsdrmgcqvewryteagdrvrvskrsgriipipmaayethdyktpgtykvtei
MSWYCGGGFLLIGNNKGRTGVFGIFNNTYNMYLEFEYPKIVNEYERKYATGCFSDIenedkdtkeqdvLAVTYQPKLSTFEMDIMEEHKIEVLFLGQVYHVYPKGPQYTVVDQGKDSDfdfstdrpwevpflarnrpweknkkkipiepikdwsifkgDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQFIIKQEAPLLVTNEValvdpsdrmgcqvewryteagdrvrvskrsgriipipmaayethdyktpgtykvtei
MSWYCGGGFLLIGNNKGRTGVFGIFNNTYNMYLEFEYPKIVNEYERKYATGCFSDIENEDKDTKEQDVLAVTYQPKLSTFEMDIMEEHKIEVLFLGQVYHVYPKGPQYTVVDQGKDSDFDFSTDRPWEVPFLARNRPWeknkkkipiepikDWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQFIIKQEAPLLVTNEVALVDPSDRMGCQVEWRYTEAGDRVRVSKRSGRIIPIPMAAYETHDYKTPGTYKVTEI
**WYCGGGFLLIGNNKGRTGVFGIFNNTYNMYLEFEYPKIVNEYERKYATGCFSDIE********QDVLAVTYQPKLSTFEMDIMEEHKIEVLFLGQVYHVYPKGPQYTVVDQGKDSDFDFSTDRPWEVPFLARNRPWEKNKKKIPIEPIKDWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQFIIKQEAPLLVTNEVALVDPSDRMGCQVEWRYTEAGDRVRVSKRSGRIIPIPMAAYETHDY***********
*SWYCGGGFLLIGNNKGRTGVFGIFNNTYNMYLEFEYPKIVNEYERKYATGCFSDIE********QDVLAVTYQPKLSTFEMDIMEEHKIEVLFLGQVYHVYPKGPQYTVVDQGKDSDFDFSTDRPWEV******************EPIKDWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQFIIKQEAPLLVTNEVALVDPSDRMGCQVEWRYTEAGDRVRVSKRSGRIIPIPMAAYETHDYKTPG*******
MSWYCGGGFLLIGNNKGRTGVFGIFNNTYNMYLEFEYPKIVNEYERKYATGCFSDIENEDKDTKEQDVLAVTYQPKLSTFEMDIMEEHKIEVLFLGQVYHVYPKGPQYTVVDQGKDSDFDFSTDRPWEVPFLARNRPWEKNKKKIPIEPIKDWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQFIIKQEAPLLVTNEVALVDPSDRMGCQVEWRYTEAGDRVRVSKRSGRIIPIPMAAYETHDYKTPGTYKVTEI
*SWYCGGGFLLIGNNKGRTGVFGIFNNTYNMYLEFEYPKIVNEYERKYATGCFSDIENEDKDTKEQDVLAVTYQPKLSTFEMDIMEEHKIEVLFLGQVYHVYPKGPQYTVVDQGKDSDFDFSTDRPWEVPFLARNRPWEKNKKKIPIEPIKDWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQFIIKQEAPLLVTNEVALVDPSDRMGCQVEWRYTEAGDRVRVSKRSGRIIPIPMAAYETHDYKTPGTYKVTEI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSWYCGGGFLLIGNNKGRTGVFGIFNNTYNMYLEFEYPKIVNEYERKYATGCFSDIENEDKDTKEQDVLAVTYQPKLSTFEMDIMEEHKIEVLFLGQVYHVYPKGPQYTVVDQGKDSDFDFSTDRPWEVPFLARNRPWEKNKKKIPIEPIKDWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQFIIKQEAPLLVTNEVALVDPSDRMGCQVEWRYTEAGDRVRVSKRSGRIIPIPMAAYETHDYKTPGTYKVTEI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query273 2.2.26 [Sep-21-2011]
Q29MA5247 Probable 39S ribosomal pr yes N/A 0.622 0.688 0.511 5e-43
Q9VMY1247 Probable 39S ribosomal pr yes N/A 0.622 0.688 0.517 4e-41
Q3SYS0216 39S ribosomal protein L24 yes N/A 0.490 0.620 0.485 7e-29
Q6DH02216 Probable 39S ribosomal pr yes N/A 0.538 0.680 0.439 2e-28
Q9CQ06216 39S ribosomal protein L24 yes N/A 0.487 0.615 0.468 4e-28
Q66H47216 39S ribosomal protein L24 yes N/A 0.487 0.615 0.468 4e-28
Q6GPM4216 Probable 39S ribosomal pr N/A N/A 0.494 0.625 0.461 6e-28
Q96A35216 39S ribosomal protein L24 yes N/A 0.487 0.615 0.475 3e-26
Q61DH4278 Probable 39S ribosomal pr N/A N/A 0.553 0.543 0.362 7e-20
P91353278 Probable 39S ribosomal pr yes N/A 0.428 0.420 0.420 6e-19
>sp|Q29MA5|RM24_DROPS Probable 39S ribosomal protein L24, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=mRpL24 PE=3 SV=1 Back     alignment and function desciption
 Score =  174 bits (442), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 90/176 (51%), Positives = 119/176 (67%), Gaps = 6/176 (3%)

Query: 97  QVYHVYPKGPQYTVVDQGKDSDFDFSTDRPWEVPFLARNRPWEKNKKKIPIEPIKDWSIF 156
           QVY   P+   Y +    +   F ++T+RPW   F  +N P    ++K+ IEP++DWS F
Sbjct: 28  QVYWQTPREKNY-LPRTVERKRFRYTTNRPWTGQFRQQNMP-ATMRRKVLIEPVEDWSFF 85

Query: 157 KGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQ----FIIKQEAPLLV 212
           +GDR+E+LVGKDKGKQG V Q+  E N VIVEGLN + +++G  +     IIK EAPL V
Sbjct: 86  RGDRIEVLVGKDKGKQGIVTQVIPERNWVIVEGLNWHYRRVGAEKEFPGIIIKSEAPLHV 145

Query: 213 TNEVALVDPSDRMGCQVEWRYTEAGDRVRVSKRSGRIIPIPMAAYETHDYKTPGTY 268
            N++ LVDPSD +G + EWR+TE G++VRVS RSGRIIPIP    +THDYKTP  Y
Sbjct: 146 LNDIRLVDPSDLLGTEFEWRFTEEGEKVRVSMRSGRIIPIPETNNQTHDYKTPNAY 201

Drosophila pseudoobscura pseudoobscura (taxid: 46245)
>sp|Q9VMY1|RM24_DROME Probable 39S ribosomal protein L24, mitochondrial OS=Drosophila melanogaster GN=mRpL24 PE=1 SV=1 Back     alignment and function description
>sp|Q3SYS0|RM24_BOVIN 39S ribosomal protein L24, mitochondrial OS=Bos taurus GN=MRPL24 PE=1 SV=1 Back     alignment and function description
>sp|Q6DH02|RM24_DANRE Probable 39S ribosomal protein L24, mitochondrial OS=Danio rerio GN=mrpl24 PE=2 SV=1 Back     alignment and function description
>sp|Q9CQ06|RM24_MOUSE 39S ribosomal protein L24, mitochondrial OS=Mus musculus GN=Mrpl24 PE=2 SV=1 Back     alignment and function description
>sp|Q66H47|RM24_RAT 39S ribosomal protein L24, mitochondrial OS=Rattus norvegicus GN=Mrpl24 PE=2 SV=1 Back     alignment and function description
>sp|Q6GPM4|RM24_XENLA Probable 39S ribosomal protein L24, mitochondrial OS=Xenopus laevis GN=mrpl24 PE=2 SV=1 Back     alignment and function description
>sp|Q96A35|RM24_HUMAN 39S ribosomal protein L24, mitochondrial OS=Homo sapiens GN=MRPL24 PE=1 SV=1 Back     alignment and function description
>sp|Q61DH4|RM24_CAEBR Probable 39S ribosomal protein L24, mitochondrial OS=Caenorhabditis briggsae GN=CBG12482 PE=3 SV=1 Back     alignment and function description
>sp|P91353|RM24_CAEEL Probable 39S ribosomal protein L24, mitochondrial OS=Caenorhabditis elegans GN=F59A3.3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query273
58389458251 AGAP008405-PA [Anopheles gambiae str. PE 0.622 0.677 0.558 2e-44
312375398241 hypothetical protein AND_14210 [Anophele 0.545 0.618 0.590 5e-43
170028261251 39S ribosomal protein L24, mitochondrial 0.622 0.677 0.535 3e-42
239788543254 ACYPI008730 [Acyrthosiphon pisum] 0.575 0.618 0.567 4e-42
350536701254 probable 39S ribosomal protein L24, mito 0.575 0.618 0.567 4e-42
157131921251 mitochondrial ribosomal protein L24 [Aed 0.622 0.677 0.530 5e-42
239788531254 ACYPI008730 [Acyrthosiphon pisum] gi|239 0.564 0.606 0.572 1e-41
307172399251 Probable 39S ribosomal protein L24, mito 0.633 0.689 0.541 2e-41
125985921247 GA21365 [Drosophila pseudoobscura pseudo 0.622 0.688 0.511 3e-41
321467551238 hypothetical protein DAPPUDRAFT_92874 [D 0.622 0.714 0.519 3e-41
>gi|58389458|ref|XP_317046.2| AGAP008405-PA [Anopheles gambiae str. PEST] gi|55237285|gb|EAA12224.2| AGAP008405-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/181 (55%), Positives = 127/181 (70%), Gaps = 11/181 (6%)

Query: 95  LGQVYHVYPKG-PQY--TVVDQGKDSDFDFSTDRPWEVPFLARNRPWEKNKKKIPIEPIK 151
           + QVY   P+G PQY    V++ K   F F+T+RPW   F  +N P    +KK+ IEPI 
Sbjct: 29  MEQVYWKTPRGKPQYLPRTVERRK---FRFTTNRPWTGQFRQQNMP-GTIRKKVFIEPIA 84

Query: 152 DWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQ----FIIKQE 207
           +WS ++GDRVE+LVGKDKGKQG V Q+ QE N VIV GLN +L+K+ D +     +IK E
Sbjct: 85  NWSFYRGDRVEVLVGKDKGKQGIVSQVIQERNWVIVSGLNCHLRKVADEKEYPGIMIKSE 144

Query: 208 APLLVTNEVALVDPSDRMGCQVEWRYTEAGDRVRVSKRSGRIIPIPMAAYETHDYKTPGT 267
           +PLLVT++V LVDPSD     +EWRYTE G++VRVS R+GRIIPIP A  ETHDYKT GT
Sbjct: 145 SPLLVTSQVQLVDPSDLQATAIEWRYTEDGEKVRVSTRTGRIIPIPKANEETHDYKTKGT 204

Query: 268 Y 268
           Y
Sbjct: 205 Y 205

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|312375398|gb|EFR22779.1| hypothetical protein AND_14210 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|170028261|ref|XP_001842014.1| 39S ribosomal protein L24, mitochondrial [Culex quinquefasciatus] gi|170055433|ref|XP_001863580.1| 39S ribosomal protein L24, mitochondrial [Culex quinquefasciatus] gi|167874169|gb|EDS37552.1| 39S ribosomal protein L24, mitochondrial [Culex quinquefasciatus] gi|167875403|gb|EDS38786.1| 39S ribosomal protein L24, mitochondrial [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|239788543|dbj|BAH70946.1| ACYPI008730 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|350536701|ref|NP_001233069.1| probable 39S ribosomal protein L24, mitochondrial-like [Acyrthosiphon pisum] gi|239788533|dbj|BAH70941.1| ACYPI008730 [Acyrthosiphon pisum] gi|239788535|dbj|BAH70942.1| ACYPI008730 [Acyrthosiphon pisum] gi|239788537|dbj|BAH70943.1| ACYPI008730 [Acyrthosiphon pisum] gi|239788539|dbj|BAH70944.1| ACYPI008730 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|157131921|ref|XP_001655972.1| mitochondrial ribosomal protein L24 [Aedes aegypti] gi|108871351|gb|EAT35576.1| AAEL012264-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|239788531|dbj|BAH70940.1| ACYPI008730 [Acyrthosiphon pisum] gi|239788541|dbj|BAH70945.1| ACYPI008730 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307172399|gb|EFN63865.1| Probable 39S ribosomal protein L24, mitochondrial [Camponotus floridanus] Back     alignment and taxonomy information
>gi|125985921|ref|XP_001356724.1| GA21365 [Drosophila pseudoobscura pseudoobscura] gi|122069640|sp|Q29MA5.1|RM24_DROPS RecName: Full=Probable 39S ribosomal protein L24, mitochondrial; Short=L24mt; Short=MRP-L24; Flags: Precursor gi|54645049|gb|EAL33789.1| GA21365 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|321467551|gb|EFX78541.1| hypothetical protein DAPPUDRAFT_92874 [Daphnia pulex] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query273
UNIPROTKB|Q29MA5247 mRpL24 "Probable 39S ribosomal 0.615 0.680 0.494 4.8e-39
FB|FBgn0031651247 mRpL24 "mitochondrial ribosoma 0.615 0.680 0.5 5.5e-38
UNIPROTKB|Q3SYS0216 MRPL24 "39S ribosomal protein 0.369 0.467 0.594 7.3e-27
ZFIN|ZDB-GENE-040718-98216 mrpl24 "mitochondrial ribosoma 0.542 0.685 0.416 1.9e-26
UNIPROTKB|F1RHJ1216 MRPL24 "Uncharacterized protei 0.369 0.467 0.584 2.5e-26
UNIPROTKB|E2QS97219 MRPL24 "Uncharacterized protei 0.494 0.616 0.475 4e-26
MGI|MGI:1914957216 Mrpl24 "mitochondrial ribosoma 0.490 0.620 0.45 5.2e-26
RGD|1359289216 mrpl24 "mitochondrial ribosoma 0.490 0.620 0.45 5.2e-26
UNIPROTKB|Q96A35216 MRPL24 "39S ribosomal protein 0.490 0.620 0.457 3.6e-25
WB|WBGene00019076278 mrpl-24 [Caenorhabditis elegan 0.428 0.420 0.420 1.7e-20
UNIPROTKB|Q29MA5 mRpL24 "Probable 39S ribosomal protein L24, mitochondrial" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] Back     alignment and assigned GO terms
 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 88/178 (49%), Positives = 114/178 (64%)

Query:    97 QVYHVYPKGPQYT--VVDQGKDSDFDFSTDRPWEVPFLARNRPWXXXXXXXXXXXXXDWS 154
             QVY   P+   Y    V++ +   F ++T+RPW   F  +N P              DWS
Sbjct:    28 QVYWQTPREKNYLPRTVERKR---FRYTTNRPWTGQFRQQNMP-ATMRRKVLIEPVEDWS 83

Query:   155 IFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMG-DSQF---IIKQEAPL 210
              F+GDR+E+LVGKDKGKQG V Q+  E N VIVEGLN + +++G + +F   IIK EAPL
Sbjct:    84 FFRGDRIEVLVGKDKGKQGIVTQVIPERNWVIVEGLNWHYRRVGAEKEFPGIIIKSEAPL 143

Query:   211 LVTNEVALVDPSDRMGCQVEWRYTEAGDRVRVSKRSGRIIPIPMAAYETHDYKTPGTY 268
              V N++ LVDPSD +G + EWR+TE G++VRVS RSGRIIPIP    +THDYKTP  Y
Sbjct:   144 HVLNDIRLVDPSDLLGTEFEWRFTEEGEKVRVSMRSGRIIPIPETNNQTHDYKTPNAY 201
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
FB|FBgn0031651 mRpL24 "mitochondrial ribosomal protein L24" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SYS0 MRPL24 "39S ribosomal protein L24, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-98 mrpl24 "mitochondrial ribosomal protein L24" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1RHJ1 MRPL24 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2QS97 MRPL24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1914957 Mrpl24 "mitochondrial ribosomal protein L24" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1359289 mrpl24 "mitochondrial ribosomal protein L24" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q96A35 MRPL24 "39S ribosomal protein L24, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00019076 mrpl-24 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q29MA5RM24_DROPSNo assigned EC number0.51130.62270.6882yesN/A
Q9VMY1RM24_DROMENo assigned EC number0.51700.62270.6882yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query273
PRK00004105 PRK00004, rplX, 50S ribosomal protein L24; Reviewe 7e-20
TIGR01079104 TIGR01079, rplX_bact, ribosomal protein L24, bacte 3e-19
cd0608965 cd06089, KOW_RPL26, KOW motif of Ribosomal Protein 8e-14
COG0198104 COG0198, RplX, Ribosomal protein L24 [Translation, 2e-12
CHL0014183 CHL00141, rpl24, ribosomal protein L24; Validated 1e-09
PRK1228176 PRK12281, rplX, 50S ribosomal protein L24; Reviewe 5e-08
pfam0046732 pfam00467, KOW, KOW motif 7e-04
smart0073928 smart00739, KOW, KOW (Kyprides, Ouzounis, Woese) m 0.002
>gnl|CDD|234566 PRK00004, rplX, 50S ribosomal protein L24; Reviewed Back     alignment and domain information 
 Score = 81.7 bits (203), Expect = 7e-20
 Identities = 44/102 (43%), Positives = 66/102 (64%), Gaps = 8/102 (7%)

Query: 155 IFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKK------MGDSQFIIKQEA 208
           I KGD V ++ GKDKGK+G V+++  + N VIVEG+N  +KK            II++EA
Sbjct: 5   IKKGDTVIVIAGKDKGKRGKVLKVLPKKNKVIVEGVNI-VKKHQKPNQENPQGGIIEKEA 63

Query: 209 PLLVTNEVALVDPSDRMGCQVEWRYTEAGDRVRVSKRSGRII 250
           P+ ++N VALVDP      +V +++ E G +VRV+K+SG +I
Sbjct: 64  PIHISN-VALVDPKTGKATRVGFKFLEDGKKVRVAKKSGEVI 104

Length = 105
>gnl|CDD|233263 TIGR01079, rplX_bact, ribosomal protein L24, bacterial/organelle Back     alignment and domain information
>gnl|CDD|240513 cd06089, KOW_RPL26, KOW motif of Ribosomal Protein L26 Back     alignment and domain information
>gnl|CDD|223276 COG0198, RplX, Ribosomal protein L24 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|214374 CHL00141, rpl24, ribosomal protein L24; Validated Back     alignment and domain information
>gnl|CDD|183399 PRK12281, rplX, 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>gnl|CDD|144165 pfam00467, KOW, KOW motif Back     alignment and domain information
>gnl|CDD|128978 smart00739, KOW, KOW (Kyprides, Ouzounis, Woese) motif Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 273
KOG1708|consensus236 100.0
TIGR01079104 rplX_bact ribosomal protein L24, bacterial/organel 100.0
PRK00004105 rplX 50S ribosomal protein L24; Reviewed 100.0
KOG1708|consensus236 100.0
COG0198104 RplX Ribosomal protein L24 [Translation, ribosomal 99.96
CHL0014183 rpl24 ribosomal protein L24; Validated 99.9
PRK1228176 rplX 50S ribosomal protein L24; Reviewed 99.88
PRK01191120 rpl24p 50S ribosomal protein L24P; Validated 99.79
PTZ00194143 60S ribosomal protein L26; Provisional 99.77
TIGR01080114 rplX_A_E ribosomal protein L24p/L26e, archaeal/euk 99.73
PF0046732 KOW: KOW motif; InterPro: IPR005824 Ribosomes are 98.56
PRK1228176 rplX 50S ribosomal protein L24; Reviewed 98.55
CHL0014183 rpl24 ribosomal protein L24; Validated 98.53
TIGR01079104 rplX_bact ribosomal protein L24, bacterial/organel 98.38
PRK00004105 rplX 50S ribosomal protein L24; Reviewed 98.19
KOG3401|consensus145 97.82
smart0073928 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i 97.45
COG0198104 RplX Ribosomal protein L24 [Translation, ribosomal 97.27
PRK01191120 rpl24p 50S ribosomal protein L24P; Validated 96.52
PRK08559153 nusG transcription antitermination protein NusG; V 96.46
TIGR00405145 L26e_arch ribosomal protein L24p/L26e, archaeal. T 96.37
PRK05609181 nusG transcription antitermination protein NusG; V 96.08
TIGR00922172 nusG transcription termination/antitermination fac 95.96
COG0250178 NusG Transcription antiterminator [Transcription] 95.76
PTZ00194143 60S ribosomal protein L26; Provisional 95.61
PF0046732 KOW: KOW motif; InterPro: IPR005824 Ribosomes are 94.73
TIGR01955159 RfaH transcriptional activator RfaH. This model re 94.65
TIGR01080114 rplX_A_E ribosomal protein L24p/L26e, archaeal/euk 94.42
PRK09014162 rfaH transcriptional activator RfaH; Provisional 93.98
TIGR01956258 NusG_myco NusG family protein. This model represen 93.84
PRK0433384 50S ribosomal protein L14e; Validated 91.83
smart0073928 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i 86.58
PTZ00065130 60S ribosomal protein L14; Provisional 84.55
KOG1999|consensus 1024 84.47
>KOG1708|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.2e-43  Score=315.76  Aligned_cols=163  Identities=48%  Similarity=0.809  Sum_probs=145.5

Q ss_pred             hcceeecCCCCCC-cceeecCCCCCcccCCCCCCChhhhhcCCCccccCCCCCcccC--cccceecCCeEEEeecCCCCc
Q psy5495          95 LGQVYHVYPKGPQ-YTVVDQGKDSDFDFSTDRPWEVPFLARNRPWEKNKKKIPIEPI--KDWSIFKGDRVEILVGKDKGK  171 (273)
Q Consensus        95 ~~~v~~~~p~~~~-y~~~~~~~~~~y~~~~~rPwt~~~~~~n~p~~~r~~kv~vePi--~~w~I~kGD~V~VI~GkDKGK  171 (273)
                      .+.+||.+|..-+ |.|+++ +.+.          -.+..+|+|+.+|+ .+.+|||  .+|++|.||+|+||+||||||
T Consensus        22 ~er~y~isP~~~~~~~pr~~-adk~----------~~~~qk~~~w~rrr-~~~~e~i~d~dw~ff~GDtVeVlvGkDkGk   89 (236)
T KOG1708|consen   22 FERQYLISPISLSVTSPRKV-ADKR----------CLVLQKNKPWERRR-CVPVEPIIDEDWHFFFGDTVEVLVGKDKGK   89 (236)
T ss_pred             hhceeeeccccccccCCCCh-hhhh----------hhHHhhcCcccccc-CCCCCCccccceeEecCCEEEEEecccCCc
Confidence            3447887776333 666666 3333          23466899999999 9999999  699999999999999999999


Q ss_pred             eeEEEEEEccCCEEEEcCeeeEEeecCCC-----CceEEEeeecccCCC-eeeeCCCCCCceeEEEEEecCCcEEEEEcc
Q psy5495         172 QGYVIQIFQEINSVIVEGLNTYLKKMGDS-----QFIIKQEAPLLVTNE-VALVDPSDRMGCQVEWRYTEAGDRVRVSKR  245 (273)
Q Consensus       172 ~GkV~~V~r~~n~ViVEGvN~~~k~v~~~-----Ggii~~EaPIhvtSN-V~LVdP~~~KptrV~~r~~edGkKVRvskk  245 (273)
                      ||+|++|++++|||+|+|+|++++|++..     |.|+.+|||||+ || ||||||++.++|+++|+++++|+|||||.+
T Consensus        90 qG~Vtqv~r~~s~VvV~gln~k~r~~gsekeg~pgtivk~EaPlhv-sk~VmLvdp~d~q~te~~wr~~e~GekVRvstr  168 (236)
T KOG1708|consen   90 QGEVTQVIRHRSWVVVKGLNTKYRHMGSEKEGEPGTIVKSEAPLHV-SKQVMLVDPEDDQPTEVEWRFTEDGEKVRVSTR  168 (236)
T ss_pred             cceEEEEeecCceEEEcccchhhhhhcccccCCCceEEeecCCcee-cceeEEECccccCCceeeEEEcCCCcEEEEEec
Confidence            99999999999999999999999999743     999999999999 77 999999999999999999999999999999


Q ss_pred             CCcccCCCCCccccccCCCCCcceecc
Q psy5495         246 SGRIIPIPMAAYETHDYKTPGTYKVTE  272 (273)
Q Consensus       246 sG~iIP~P~~a~~~~D~~~pe~y~e~~  272 (273)
                      ||++||+|+.+  |+||++||+|+|.|
T Consensus       169 SG~iIpipe~~--t~dy~~pe~yiE~e  193 (236)
T KOG1708|consen  169 SGRIIPIPEKW--TADYIKPELYIEAE  193 (236)
T ss_pred             ccccccCcccc--cccccCchheeecc
Confidence            99999999996  99999999999986

>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle Back     alignment and domain information
>PRK00004 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>KOG1708|consensus Back     alignment and domain information
>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00141 rpl24 ribosomal protein L24; Validated Back     alignment and domain information
>PRK12281 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated Back     alignment and domain information
>PTZ00194 60S ribosomal protein L26; Provisional Back     alignment and domain information
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic Back     alignment and domain information
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK12281 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>CHL00141 rpl24 ribosomal protein L24; Validated Back     alignment and domain information
>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle Back     alignment and domain information
>PRK00004 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>KOG3401|consensus Back     alignment and domain information
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif Back     alignment and domain information
>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated Back     alignment and domain information
>PRK08559 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal Back     alignment and domain information
>PRK05609 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>TIGR00922 nusG transcription termination/antitermination factor NusG Back     alignment and domain information
>COG0250 NusG Transcription antiterminator [Transcription] Back     alignment and domain information
>PTZ00194 60S ribosomal protein L26; Provisional Back     alignment and domain information
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>TIGR01955 RfaH transcriptional activator RfaH Back     alignment and domain information
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic Back     alignment and domain information
>PRK09014 rfaH transcriptional activator RfaH; Provisional Back     alignment and domain information
>TIGR01956 NusG_myco NusG family protein Back     alignment and domain information
>PRK04333 50S ribosomal protein L14e; Validated Back     alignment and domain information
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif Back     alignment and domain information
>PTZ00065 60S ribosomal protein L14; Provisional Back     alignment and domain information
>KOG1999|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query273
2ftc_N96 Structural Model For The Large Subunit Of The Mamma 2e-21
1nkw_S115 Crystal Structure Of The Large Ribosomal Subunit Fr 4e-06
1pnu_S113 Crystal Structure Of A Streptomycin Dependent Ribos 4e-06
3tve_U102 Crystal Structure Analysis Of Ribosomal Decoding. T 2e-04
3mrz_U109 Recognition Of The Amber Stop Codon By Release Fact 3e-04
2j01_Y110 Structure Of The Thermus Thermophilus 70s Ribosome 3e-04
1p85_S103 Real Space Refined Coordinates Of The 50s Subunit F 9e-04
>pdb|2FTC|N Chain N, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 96 Back     alignment and structure 
Iteration: 1

 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 69/97 (71%), Gaps = 5/97 (5%)
Query: 158 GDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQ----FIIKQEAPLLVT 213
           GD VEIL GKD GKQG V+Q+ ++ N V+V GLNT+ + +G +      +I  EAPLL  
Sbjct: 1   GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTMDYRGTMIPSEAPLL-H 59
Query: 214 NEVALVDPSDRMGCQVEWRYTEAGDRVRVSKRSGRII 250
            +V LVDP DR   ++EWR+TEAG+RVRVS RSGRII
Sbjct: 60  RQVKLVDPMDRKPTEIEWRFTEAGERVRVSTRSGRII 96
>pdb|1NKW|S Chain S, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 115 Back     alignment and structure
>pdb|1PNU|S Chain S, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 113 Back     alignment and structure
>pdb|3TVE|U Chain U, Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit For The Cognate Trna-Leu Complex Length = 102 Back     alignment and structure
>pdb|3MRZ|U Chain U, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 109 Back     alignment and structure
>pdb|2J01|Y Chain Y, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 110 Back     alignment and structure
>pdb|1P85|S Chain S, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 103 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query273
2ftc_N96 Mitochondrial ribosomal protein L24; mitochondrial 2e-32
3bbo_W191 Ribosomal protein L24; large ribosomal subunit, sp 1e-24
3v2d_Y110 50S ribosomal protein L24; ribosome associated inh 3e-22
2zjr_R115 50S ribosomal protein L24; ribosome, large ribosom 6e-20
3r8s_U102 50S ribosomal protein L24; protein biosynthesis, R 1e-18
1vq8_T120 50S ribosomal protein L24P; ribosome 50S, protein- 4e-07
3iz5_Y150 60S ribosomal protein L26 (L24P); eukaryotic ribos 7e-05
4a17_S135 RPL26, 60S ribosomal protein L21; eukaryotic ribos 3e-04
3u5e_Y127 L33, YL33, 60S ribosomal protein L26-A; translatio 4e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N Length = 96 Back     alignment and structure
 Score =  113 bits (286), Expect = 2e-32
 Identities = 54/97 (55%), Positives = 68/97 (70%), Gaps = 5/97 (5%)

Query: 158 GDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQF----IIKQEAPLLVT 213
           GD VEIL GKD GKQG V+Q+ ++ N V+V GLNT+ + +G +      +I  EAPLL  
Sbjct: 1   GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTMDYRGTMIPSEAPLLHR 60

Query: 214 NEVALVDPSDRMGCQVEWRYTEAGDRVRVSKRSGRII 250
             V LVDP DR   ++EWR+TEAG+RVRVS RSGRII
Sbjct: 61  Q-VKLVDPMDRKPTEIEWRFTEAGERVRVSTRSGRII 96
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 191 Back     alignment and structure
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ... Length = 110 Back     alignment and structure
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V Length = 115 Back     alignment and structure
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U 3i20_U ... Length = 102 Back     alignment and structure
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ... Length = 120 Back     alignment and structure
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S Length = 135 Back     alignment and structure
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U Length = 127 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query273
3v2d_Y110 50S ribosomal protein L24; ribosome associated inh 100.0
3r8s_U102 50S ribosomal protein L24; protein biosynthesis, R 100.0
2ftc_N96 Mitochondrial ribosomal protein L24; mitochondrial 100.0
2zjr_R115 50S ribosomal protein L24; ribosome, large ribosom 100.0
3bbo_W191 Ribosomal protein L24; large ribosomal subunit, sp 99.97
1vq8_T120 50S ribosomal protein L24P; ribosome 50S, protein- 99.89
3j21_U121 50S ribosomal protein L24P; archaea, archaeal, KIN 99.89
2zkr_t145 60S ribosomal protein L26; protein-RNA complex, 60 99.84
3u5e_Y127 L33, YL33, 60S ribosomal protein L26-A; translatio 99.82
4a17_S135 RPL26, 60S ribosomal protein L21; eukaryotic ribos 99.8
3iz5_Y150 60S ribosomal protein L26 (L24P); eukaryotic ribos 99.8
2zjr_R115 50S ribosomal protein L24; ribosome, large ribosom 98.48
2ftc_N96 Mitochondrial ribosomal protein L24; mitochondrial 98.44
3v2d_Y110 50S ribosomal protein L24; ribosome associated inh 98.4
3r8s_U102 50S ribosomal protein L24; protein biosynthesis, R 98.28
3bbo_W191 Ribosomal protein L24; large ribosomal subunit, sp 98.27
1nz9_A58 Transcription antitermination protein NUSG; transc 97.68
3j21_U121 50S ribosomal protein L24P; archaea, archaeal, KIN 97.47
2zkr_t145 60S ribosomal protein L26; protein-RNA complex, 60 97.41
1vq8_T120 50S ribosomal protein L24P; ribosome 50S, protein- 96.93
2e6z_A59 Transcription elongation factor SPT5; KOW motif, s 96.86
3u5e_Y127 L33, YL33, 60S ribosomal protein L26-A; translatio 96.61
3p8b_B152 Transcription antitermination protein NUSG; transc 96.6
4a17_S135 RPL26, 60S ribosomal protein L21; eukaryotic ribos 96.43
3iz5_Y150 60S ribosomal protein L26 (L24P); eukaryotic ribos 96.35
2jvv_A181 Transcription antitermination protein NUSG; transc 96.34
2do3_A69 Transcription elongation factor SPT5; KOW motif, s 96.14
2ckk_A127 KIN17; beta barrel, ribosomal protein, ribonucleop 95.32
2xhc_A352 Transcription antitermination protein NUSG; 2.45A 94.14
1m1h_A248 Transcription antitermination protein NUSG; transc 93.22
2joy_A96 50S ribosomal protein L14E; protein solution struc 88.73
3izc_N138 60S ribosomal protein RPL14 (L14E); eukaryotic rib 87.6
3j21_583 50S ribosomal protein L14E; archaea, archaeal, KIN 86.62
3iz5_N134 60S ribosomal protein L14 (L14E); eukaryotic ribos 86.36
4a18_N144 RPL27, ribosomal protein L22; ribosome, eukaryotic 86.22
4a18_F126 RPL14; ribosome, eukaryotic initiation factor 6, E 85.37
4a18_E191 RPL6; ribosome, eukaryotic initiation factor 6, EI 80.58
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ... Back     alignment and structure
Probab=100.00  E-value=1.3e-36  Score=247.37  Aligned_cols=102  Identities=30%  Similarity=0.424  Sum_probs=96.1

Q ss_pred             ccceecCCeEEEeecCCCCceeEEEEEEccCCEEEEcCeeeEEeecCCC-----CceEEEeeecccCCCeeeeCCCCCCc
Q psy5495         152 DWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDS-----QFIIKQEAPLLVTNEVALVDPSDRMG  226 (273)
Q Consensus       152 ~w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVEGvN~~~k~v~~~-----Ggii~~EaPIhvtSNV~LVdP~~~Kp  226 (273)
                      .|+|++||+|+||+|+||||+|+|++|++++|+|+|||+|++++|++++     |||+++|+|||+ |||+|+||++++|
T Consensus         4 k~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVEGvN~~kkh~kp~~~~~~Ggi~~~E~PIh~-SNV~lv~p~~~k~   82 (110)
T 3v2d_Y            4 KMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHA-SKVRPICPACGKP   82 (110)
T ss_dssp             CCSCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEETTSSEEEEECCSSSSSTTCCEEEEECCEEG-GGEEEBCTTTCSB
T ss_pred             ccccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEeCEEEEEEEeCCCccCCCCCEEEEECCcCH-HHeEEEcCcCCCc
Confidence            6899999999999999999999999999999999999999999998743     999999999999 9999999999999


Q ss_pred             eeEEEEEecCCcEEEEEccCCcccCCCC
Q psy5495         227 CQVEWRYTEAGDRVRVSKRSGRIIPIPM  254 (273)
Q Consensus       227 trV~~r~~edGkKVRvskksG~iIP~P~  254 (273)
                      |||+|++++||+|||||++||++|+.|+
T Consensus        83 tRvg~~~~edG~kvRv~kk~g~~i~~~~  110 (110)
T 3v2d_Y           83 TRVRKKFLENGKKIRVCAKCGGALDTEE  110 (110)
T ss_dssp             CCEEEEECSSCCEEEEESSSCCBCC---
T ss_pred             cEEEEEECCCCcEEEEEecCCCccCCCC
Confidence            9999999999999999999999998764
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ... Back     alignment and structure
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N Back     alignment and structure
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V Back     alignment and structure
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ... Back     alignment and structure
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U Back     alignment and structure
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S Back     alignment and structure
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V Back     alignment and structure
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N Back     alignment and structure
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ... Back     alignment and structure
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ... Back     alignment and structure
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4 Back     alignment and structure
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ... Back     alignment and structure
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U Back     alignment and structure
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D Back     alignment and structure
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S Back     alignment and structure
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G Back     alignment and structure
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5 Back     alignment and structure
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens} Back     alignment and structure
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima} Back     alignment and structure
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A Back     alignment and structure
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A Back     alignment and structure
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N Back     alignment and structure
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7 Back     alignment and structure
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 273
d2j01y1101 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) { 8e-24
d2gycs199 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) { 6e-21
d2zjrr1110 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) { 4e-20
d1vqot1119 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) { 1e-10
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]} Length = 101 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Thermus thermophilus [TaxId: 274]

 Score = 90.6 bits (225), Expect = 8e-24
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 155 IFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQ-----FIIKQEAP 209
           + KGD V +  GK KG+ G V ++  +  +VIVEG+N   K +  S        I++EAP
Sbjct: 6   VKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAP 65

Query: 210 LLVTNEVALVDPSDRMGCQVEWRYTEAGDRVRVSKR 245
           L  +  V  + P+     +V  ++ E G ++RV  +
Sbjct: 66  LHASK-VRPICPACGKPTRVRKKFLENGKKIRVCAK 100
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]} Length = 99 Back     information, alignment and structure
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]} Length = 110 Back     information, alignment and structure
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query273
d2zjrr1110 Ribosomal proteins L24 (L24p) {Deinococcus radiodu 99.98
d2j01y1101 Ribosomal proteins L24 (L24p) {Thermus thermophilu 99.97
d2gycs199 Ribosomal proteins L24 (L24p) {Escherichia coli [T 99.97
d1vqot1119 Ribosomal proteins L24 (L24p) {Archaeon Haloarcula 99.84
d2j01y1101 Ribosomal proteins L24 (L24p) {Thermus thermophilu 98.52
d2zjrr1110 Ribosomal proteins L24 (L24p) {Deinococcus radiodu 98.5
d2gycs199 Ribosomal proteins L24 (L24p) {Escherichia coli [T 98.21
d1nppa258 N-utilization substance G protein NusG, C-terminal 97.58
d1nz9a_58 N-utilization substance G protein NusG, C-terminal 97.49
d2do3a162 Transcription elongation factor SPT5 {Human (Homo 96.4
d1vqot1119 Ribosomal proteins L24 (L24p) {Archaeon Haloarcula 96.17
d2joya196 Ribosomal protein L14e {Sulfolobus solfataricus [T 86.3
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.98  E-value=1.5e-34  Score=233.25  Aligned_cols=96  Identities=34%  Similarity=0.460  Sum_probs=91.8

Q ss_pred             cccceecCCeEEEeecCCCCceeEEEEEEccCCEEEEcCeeeEEeecCCC-----CceEEEeeecccCCCeeeeCCCCCC
Q psy5495         151 KDWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDS-----QFIIKQEAPLLVTNEVALVDPSDRM  225 (273)
Q Consensus       151 ~~w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVEGvN~~~k~v~~~-----Ggii~~EaPIhvtSNV~LVdP~~~K  225 (273)
                      .+|+|++||+|+||+|+||||+|+|++|++++|+|+|||+|++++|++++     |||+++|+|||+ |||||+||++++
T Consensus         9 ~K~kikkGD~V~VisGkdKGk~G~Vl~V~~~~~~ViVeGvN~~kkh~Kp~~~~~~Ggiv~~E~PIhi-SNV~lvdp~~~k   87 (110)
T d2zjrr1           9 DKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHA-SKVALVDPETGK   87 (110)
T ss_dssp             SCCSSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESSSCBCCCCCCTTSSSCCCCCCCBCCCBCS-SSEECBSSSSBC
T ss_pred             ceeeeeCCCEEEEeecCCCCcceEEEEEECCCCEEEEeCcEEEEEEecccccCCCCCeEeeeeeEEh-hhEEEEcCCCCC
Confidence            37999999999999999999999999999999999999999999998753     999999999999 999999999999


Q ss_pred             ceeEEEEEecCCcEEEEEccCCc
Q psy5495         226 GCQVEWRYTEAGDRVRVSKRSGR  248 (273)
Q Consensus       226 ptrV~~r~~edGkKVRvskksG~  248 (273)
                      ||||+|++ +||+|+|||++||+
T Consensus        88 ~trv~~~~-~dGkKvRv~kksGe  109 (110)
T d2zjrr1          88 ATRVRKQI-VDGKKVRVAVASGK  109 (110)
T ss_dssp             CCCCCCCC-SCTTSCCCCSSSCC
T ss_pred             ceEEEEEE-eCCeEEEEEecCCC
Confidence            99999987 68999999999997
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure