Psyllid ID: psy5549

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
MGFTDHESGINTSYVFGIDDKDGWGPRYFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHEEEEccHHcccccHHHHHHHHHHHHHHHHHHHcccEEEEcEEcccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHccc
mgftdhesgintsyvfgiddkdgwgpryfFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSipgimyarvspqwplgdvlckimpysqfVCGFVLLWTLTLISMDRYFcivvppyrskltpHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICtivfpnvptvsvSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIdgrrptadtefFLRSHHFLWPLLLALAntvvnptliirRHHFISYTF
mgftdhesgintsyvfgiddkdgwGPRYFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHlsshharhtrVMRMLCISVCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF
MGFTDHESGINTSYVFGIDDKDGWGPRYFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMvvlacllplallvyyycaIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF
*********INTSYVFGIDDKDGWGPRYFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISY**
**************VFGIDDKDGWGPRYFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKL**********************MRMLCISVCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF
MGFTDHESGINTSYVFGIDDKDGWGPRYFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKK**************TRVMRMLCISVCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF
*************************PRYFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKW*********ARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
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MGFTDHESGINTSYVFGIDDKDGWGPRYFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query331 2.2.26 [Sep-21-2011]
Q9DDN6385 Neuropeptide Y receptor t yes N/A 0.770 0.662 0.285 2e-19
O02836382 Neuropeptide Y receptor t yes N/A 0.770 0.667 0.277 2e-18
P30937384 Somatostatin receptor typ yes N/A 0.897 0.773 0.25 4e-18
Q5IS62381 Neuropeptide Y receptor t yes N/A 0.770 0.669 0.277 6e-18
P49146381 Neuropeptide Y receptor t yes N/A 0.770 0.669 0.277 6e-18
P30974 504 Tachykinin-like peptides no N/A 0.797 0.523 0.274 1e-17
Q9Z2D5381 Neuropeptide Y receptor t yes N/A 0.773 0.671 0.271 1e-17
P79113384 Neuropeptide Y receptor t yes N/A 0.694 0.598 0.280 1e-17
P97295381 Neuropeptide Y receptor t no N/A 0.688 0.598 0.293 1e-17
Q9GK74381 Neuropeptide Y receptor t yes N/A 0.755 0.656 0.273 2e-17
>sp|Q9DDN6|NPY2R_CHICK Neuropeptide Y receptor type 2 OS=Gallus gallus GN=NPY2R PE=3 SV=1 Back     alignment and function desciption
 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 145/277 (52%), Gaps = 22/277 (7%)

Query: 53  IFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVSPQWPLG 111
           I +L +  N  V+  ++ + +++TVTN+F+ NL  AD+L   L +P  +   +  +W LG
Sbjct: 64  IILLGVIGNSLVIHVIIKFKSMRTVTNFFIANLAVADLLVNTLCLPFTLVYTLLGEWKLG 123

Query: 112 DVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLG-TWFIAC 170
            VLC ++PY+Q +   V   TLT+I++DR+ CIV     SK++  R+  L +G  W ++ 
Sbjct: 124 PVLCHLVPYAQALAVHVSTVTLTVIALDRHRCIVY-HLESKIS-KRISFLIIGVAWAVSA 181

Query: 171 VVFVPVVLWFREQEVLE-----SRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLV 225
           ++  P+ + FRE  ++E       ++C+  +P    ++  T ++V M+++  +LPLA++ 
Sbjct: 182 LLASPLAI-FREYSLIEIIPDFKIVVCSEKWPGEGQLNYGTIYSVSMLLIQYVLPLAIIS 240

Query: 226 YYYCAIFRKLVETKKKWEHSHLSSH-HARHTRVMRMLCISVCVILAMWLPIFLTMILIYI 284
           Y Y  I+ KL   K        + H H R  +  +ML   V V    WLP     ++  I
Sbjct: 241 YAYTRIWTKL---KNHVSPGAGNDHYHHRRQKTTKMLVCVVVVFAVSWLPFHAFQLVSDI 297

Query: 285 DGRRPTADTEFFLRSHHFLWPL--LLALANTVVNPTL 319
           D +         L+ +  ++ +  ++A+ +T  NP L
Sbjct: 298 DSQV------LDLKEYKLIYTVFHVIAMCSTFANPLL 328
Receptor for neuropeptide Y and peptide YY.
Gallus gallus (taxid: 9031)
>sp|O02836|NPY2R_PIG Neuropeptide Y receptor type 2 OS=Sus scrofa GN=NPY2R PE=2 SV=2 Back     alignment and function description
>sp|P30937|SSR4_RAT Somatostatin receptor type 4 OS=Rattus norvegicus GN=Sstr4 PE=2 SV=1 Back     alignment and function description
>sp|Q5IS62|NPY2R_PANTR Neuropeptide Y receptor type 2 OS=Pan troglodytes GN=NPY2R PE=2 SV=1 Back     alignment and function description
>sp|P49146|NPY2R_HUMAN Neuropeptide Y receptor type 2 OS=Homo sapiens GN=NPY2R PE=2 SV=1 Back     alignment and function description
>sp|P30974|TLR1_DROME Tachykinin-like peptides receptor 86C OS=Drosophila melanogaster GN=Takr86C PE=2 SV=2 Back     alignment and function description
>sp|Q9Z2D5|NPY2R_CAVPO Neuropeptide Y receptor type 2 OS=Cavia porcellus GN=NPY2R PE=3 SV=1 Back     alignment and function description
>sp|P79113|NPY2R_BOVIN Neuropeptide Y receptor type 2 OS=Bos taurus GN=NPY2R PE=2 SV=1 Back     alignment and function description
>sp|P97295|NPY2R_MOUSE Neuropeptide Y receptor type 2 OS=Mus musculus GN=Npy2r PE=2 SV=2 Back     alignment and function description
>sp|Q9GK74|NPY2R_MACMU Neuropeptide Y receptor type 2 OS=Macaca mulatta GN=NPY2R PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query331
328700440420 PREDICTED: neuropeptide FF receptor 2-li 0.933 0.735 0.516 4e-92
345478784 448 PREDICTED: orexin receptor type 2-like [ 0.930 0.687 0.446 1e-74
242013301 455 class A rhodopsin-like G-protein coupled 0.697 0.507 0.512 6e-66
270015914417 hypothetical protein TcasGA2_TC002068 [T 0.933 0.741 0.430 4e-65
189242041 546 PREDICTED: similar to neuropeptide Y rec 0.927 0.562 0.432 6e-65
405960771365 hypothetical protein CGI_10017886 [Crass 0.927 0.841 0.344 6e-43
260834057379 hypothetical protein BRAFLDRAFT_86999 [B 0.885 0.773 0.253 1e-25
291240250351 PREDICTED: somatostatin receptor type 1 0.767 0.723 0.293 4e-24
321461656317 putative allatostatin C receptor [Daphni 0.830 0.867 0.308 2e-21
321461657312 hypothetical protein DAPPUDRAFT_12576 [D 0.794 0.842 0.307 2e-20
>gi|328700440|ref|XP_003241258.1| PREDICTED: neuropeptide FF receptor 2-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  344 bits (882), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 176/341 (51%), Positives = 228/341 (66%), Gaps = 32/341 (9%)

Query: 11  NTSYVFGIDDKDGWGPRYFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMW 70
           NTSY+ G D   GWGPRYFFTFY+EFG+ + E + E+ +  +IF  S+ AN+ +   V+ 
Sbjct: 5   NTSYLMGNDTTGGWGPRYFFTFYSEFGDEQAESAVEVTVFMVIFAASVVANVSIAWAVLR 64

Query: 71  YPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLL 130
           Y  ++TVTN FLLNLT AD+LF ++ P + Y RV P WP GD++C+++PYSQFVCGFVLL
Sbjct: 65  YREMRTVTNCFLLNLTVADLLFAITTPALAYVRVRPDWPFGDLVCRLLPYSQFVCGFVLL 124

Query: 131 WTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRL 190
           WTLTLISMDR+ CIVVPPYRS+LTP R  +LT+ TW IA  VF+PV  WF EQ VL    
Sbjct: 125 WTLTLISMDRHRCIVVPPYRSQLTPRRATVLTVLTWLIALAVFMPVPFWFHEQAVLGDTA 184

Query: 191 --ICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHS--- 245
             +CT+VFP   T  +S  FTV +V L+C+LPL+L VY+Y  IF KL +T+++ EHS   
Sbjct: 185 VNVCTLVFPKNDTFKMSIVFTVSVVSLSCILPLSLFVYHYQRIFHKLNKTRRRIEHSVSH 244

Query: 246 -----HLSSHHA----------------------RHTRVMRMLCISVCVILAMWLPIFLT 278
                H +S ++                      +H RV+R+L I+V V+L MWLPI + 
Sbjct: 245 RATAAHTTSRNSLSPPANGSIPQVLVRHEELRYRKHVRVVRVLLINVIVVLVMWLPITVV 304

Query: 279 MILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTL 319
           M LIY+DG R T DT +FLRSHHF+  LL AL NTVVNP L
Sbjct: 305 MCLIYVDGSRDTEDTGYFLRSHHFIMGLLFALLNTVVNPIL 345

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|345478784|ref|XP_003423809.1| PREDICTED: orexin receptor type 2-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|242013301|ref|XP_002427349.1| class A rhodopsin-like G-protein coupled receptor GPRnna15, putative [Pediculus humanus corporis] gi|212511708|gb|EEB14611.1| class A rhodopsin-like G-protein coupled receptor GPRnna15, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|270015914|gb|EFA12362.1| hypothetical protein TcasGA2_TC002068 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|189242041|ref|XP_001808438.1| PREDICTED: similar to neuropeptide Y receptor Y2 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|405960771|gb|EKC26654.1| hypothetical protein CGI_10017886 [Crassostrea gigas] Back     alignment and taxonomy information
>gi|260834057|ref|XP_002612028.1| hypothetical protein BRAFLDRAFT_86999 [Branchiostoma floridae] gi|229297401|gb|EEN68037.1| hypothetical protein BRAFLDRAFT_86999 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|291240250|ref|XP_002740034.1| PREDICTED: somatostatin receptor type 1 subtype B-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|321461656|gb|EFX72686.1| putative allatostatin C receptor [Daphnia pulex] Back     alignment and taxonomy information
>gi|321461657|gb|EFX72687.1| hypothetical protein DAPPUDRAFT_12576 [Daphnia pulex] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query331
ZFIN|ZDB-GENE-040426-2502383 zgc:85682 "zgc:85682" [Danio r 0.770 0.665 0.270 1.6e-22
ZFIN|ZDB-GENE-061009-35 480 sstr3 "somatostatin receptor 3 0.818 0.564 0.283 6.1e-22
UNIPROTKB|Q9DDN6385 NPY2R "Neuropeptide Y receptor 0.770 0.662 0.263 3.3e-21
UNIPROTKB|Q58G83359 SS5R "Uncharacterized protein" 0.770 0.710 0.282 1.3e-20
UNIPROTKB|F1NJP5370 SSTR5 "Uncharacterized protein 0.770 0.689 0.282 1.6e-20
UNIPROTKB|C8YUV0361 FFAR4 "Free fatty acid recepto 0.848 0.778 0.265 1.7e-20
UNIPROTKB|F1RYR8382 NPY2R "Neuropeptide Y receptor 0.770 0.667 0.267 2.7e-20
UNIPROTKB|O02836382 NPY2R "Neuropeptide Y receptor 0.770 0.667 0.267 2.7e-20
UNIPROTKB|P49146381 NPY2R "Neuropeptide Y receptor 0.770 0.669 0.267 5.9e-20
MGI|MGI:108418381 Npy2r "neuropeptide Y receptor 0.770 0.669 0.267 5.9e-20
ZFIN|ZDB-GENE-040426-2502 zgc:85682 "zgc:85682" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 73/270 (27%), Positives = 124/270 (45%)

Query:    52 IIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLG 111
             ++FI+ +  N   +  V+ Y  ++TVTN ++LNL  AD L+ L +P +    V   WP G
Sbjct:    43 VVFIVGLTGNSLAIFVVLRYTKMKTVTNMYILNLAVADELYILGLPFLTTHNVLSYWPFG 102

Query:   112 DVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKL--TPHRVLLLTLGTWFIA 169
             + LC+I+ ++  +  F   + LT++S+DRY   VV P RS     P    ++    W ++
Sbjct:   103 NFLCRILMWADSISQFTSTFCLTVMSIDRYMA-VVHPIRSARWRRPSVAKVINSMVWALS 161

Query:   170 CVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMXXXXXXXXXXXXXXXXX 229
             C++ +PV+++   Q  L +   C + +P  P    STAF +                   
Sbjct:   162 CLLTLPVIIYCDVQPGLNT---CNLSWPE-PRDVWSTAFILYTAILGFFCPLLVICLCYL 217

Query:   230 XIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDGRRP 289
              I   +++ K     + LS       +V RM+ I V V +  WLP F+  I   +     
Sbjct:   218 LI---VIKVKSASARAGLSKRRKSEKKVTRMVVIIVVVFVICWLPFFMLNIFNLV----V 270

Query:   290 TADTEFFLRSHHFLWPLLLALANTVVNPTL 319
             T      +   +FL  ++L   N+  NP L
Sbjct:   271 TLPENNIITGVYFL-TVILTYVNSCANPLL 299
GO:0004994 "somatostatin receptor activity" evidence=IEA
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0004930 "G-protein coupled receptor activity" evidence=IEA
GO:0007165 "signal transduction" evidence=IEA
GO:0004871 "signal transducer activity" evidence=IEA
ZFIN|ZDB-GENE-061009-35 sstr3 "somatostatin receptor 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9DDN6 NPY2R "Neuropeptide Y receptor type 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q58G83 SS5R "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NJP5 SSTR5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|C8YUV0 FFAR4 "Free fatty acid receptor 4" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|F1RYR8 NPY2R "Neuropeptide Y receptor type 2" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|O02836 NPY2R "Neuropeptide Y receptor type 2" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P49146 NPY2R "Neuropeptide Y receptor type 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:108418 Npy2r "neuropeptide Y receptor Y2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query331
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 3e-34
PHA03087335 PHA03087, PHA03087, G protein-coupled chemokine re 5e-21
PHA02638417 PHA02638, PHA02638, CC chemokine receptor-like pro 1e-17
PHA02834323 PHA02834, PHA02834, chemokine receptor-like protei 1e-07
PHA03235409 PHA03235, PHA03235, DNA packaging protein UL33; Pr 2e-05
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score =  125 bits (316), Expect = 3e-34
 Identities = 76/256 (29%), Positives = 121/256 (47%), Gaps = 12/256 (4%)

Query: 66  ITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIM-YARVSPQWPLGDVLCKIMPYSQFV 124
           + ++    L+T TN FLLNL  AD+LF L++P    Y  V   WP GD LCK++ +   V
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60

Query: 125 CGFVLLWTLTLISMDRYFCIVVPP-YRSKLTPHRVLLLTLGTWFIACVV-FVPVVLWFRE 182
            G+  +  LT IS+DRY  IV P  YR   TP R  +L L  W +A ++   P++  +  
Sbjct: 61  NGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLR 120

Query: 183 QEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKW 242
                +   C I FP   T      +T++  +L  +LPL +++  Y  I R L +  +  
Sbjct: 121 TVEEGNVTTCLIDFPEESTKRS---YTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSG 177

Query: 243 EHSHLSSHHAR-HTRVMRMLCISVCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHH 301
                +   +    +  +ML + V V +  WLP  + ++L  +        + + L    
Sbjct: 178 ASQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCP-----LSIWRLLPTA 232

Query: 302 FLWPLLLALANTVVNP 317
            L  L LA  N+ +NP
Sbjct: 233 LLITLWLAYVNSCLNP 248

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|223017 PHA03235, PHA03235, DNA packaging protein UL33; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 331
KOG4219|consensus423 100.0
PHA03234338 DNA packaging protein UL33; Provisional 100.0
PHA03235409 DNA packaging protein UL33; Provisional 100.0
PHA02834323 chemokine receptor-like protein; Provisional 100.0
PHA02638417 CC chemokine receptor-like protein; Provisional 100.0
PHA03087335 G protein-coupled chemokine receptor-like protein; 100.0
KOG4220|consensus503 100.0
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 100.0
KOG2087|consensus363 99.92
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 99.91
PF10324318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 99.87
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 99.85
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 99.73
PF05462303 Dicty_CAR: Slime mold cyclic AMP receptor 99.69
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 99.68
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 99.51
PF03402265 V1R: Vomeronasal organ pheromone receptor family, 99.48
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 99.34
PF11710201 Git3: G protein-coupled glucose receptor regulatin 99.23
PF10327303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 99.04
PF02118275 Srg: Srg family chemoreceptor; InterPro: IPR000609 99.04
PF02101405 Ocular_alb: Ocular albinism type 1 protein; InterP 98.98
PF10292324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 98.95
PF04789305 DUF621: Protein of unknown function (DUF621); Inte 98.89
PF10326307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 98.82
PF10319310 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept 98.78
PF00002242 7tm_2: 7 transmembrane receptor (Secretin family); 98.53
PF10316273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 98.41
PF10318302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 98.34
KOG4193|consensus610 98.17
PF02076283 STE3: Pheromone A receptor; InterPro: IPR001499 G- 98.06
PF02117328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 97.93
PF10322307 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept 97.85
PF03125365 Sre: C. elegans Sre G protein-coupled chemorecepto 97.73
KOG4564|consensus473 97.69
PF1197076 Git3_C: G protein-coupled glucose receptor regulat 97.58
PF01534328 Frizzled: Frizzled/Smoothened family membrane regi 97.55
PF06681226 DUF1182: Protein of unknown function (DUF1182); In 96.88
PF03383153 Serpentine_r_xa: Caenorhabditis serpentine recepto 95.8
PF02175236 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept 94.48
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 91.9
>KOG4219|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.8e-48  Score=316.11  Aligned_cols=292  Identities=24%  Similarity=0.400  Sum_probs=252.7

Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHhhhcceeeeeeeecCCCCchhhHHHHHHHHHHHHHHh-HhhhhhhhhccCCCCchhh
Q psy5549          35 EFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDV  113 (331)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~~~N~~vi~~i~~~~~~~~~~~~~i~~lai~Dll~~~-~~p~~~~~~~~~~~~~~~~  113 (331)
                      ....+.+.+.+.++++.++.++++.||+++++++..+|++|+.+|++++|||+||+..++ ..++......+.+|.+|..
T Consensus        27 ~f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f  106 (423)
T KOG4219|consen   27 LFVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSF  106 (423)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccc
Confidence            456788899999999999999999999999999999999999999999999999999999 9999988888899999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCccchhhHHHHHHHHHHHHHHHhhhhhhheeceeec----cce
Q psy5549         114 LCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVL----ESR  189 (331)
Q Consensus       114 ~C~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~----~~~  189 (331)
                      .|++..++......+|++++++||+|||.||. +|++.|.++|.++.+++++|+.+++++.|..+........    .+.
T Consensus       107 ~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi-~Pl~~r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~  185 (423)
T KOG4219|consen  107 YCRFVNFFPITAVFVSVFTLVAIAIDRYMAII-HPLQPRPSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESR  185 (423)
T ss_pred             eeeeccccchhhhhHhHHHHHHHHHHHHHHHh-hhcccCCCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcce
Confidence            99999999999999999999999999999999 9999999999999999999999999999999887776522    335


Q ss_pred             eEEeeeCCCC--Ccccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccc-cccchhhhhhhHHHHHHH
Q psy5549         190 LICTIVFPNV--PTVSVS---TAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHS-HLSSHHARHTRVMRMLCI  263 (331)
Q Consensus       190 ~~C~~~~~~~--~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  263 (331)
                      ..|...+++.  +.....   +.|...+.++.+++|++++...|..|.+++++.+....++ .+.++.+.++|+.||+++
T Consensus       186 ~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d~~~~~~kak~K~vkmlii  265 (423)
T KOG4219|consen  186 VVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQDRKHEQLKAKKKVVKMLII  265 (423)
T ss_pred             EEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhchhhHHHHHHHHHHHHHHH
Confidence            6676666554  221112   2267788888999999999999999999999988644322 244566889999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHhcCCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccCC
Q psy5549         264 SVCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF  331 (331)
Q Consensus       264 ~~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~~  331 (331)
                      +++.|.+||+|+++..++.....+........    ..+....+++..|++.||+||++.|++||..|
T Consensus       266 VV~~FaicWlPyh~y~il~~~~~~i~~~k~i~----~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf  329 (423)
T KOG4219|consen  266 VVVIFAICWLPYHIYFILNATNPEINRKKFIQ----QVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGF  329 (423)
T ss_pred             HHHHHHHhccChhHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHhhhccHhhhhhHHHHHHHH
Confidence            99999999999999999988665544443322    48889999999999999999999999998754

>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03125 Sre: C Back     alignment and domain information
>KOG4564|consensus Back     alignment and domain information
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ] Back     alignment and domain information
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans Back     alignment and domain information
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query331
4djh_A 480 Structure Of The Human Kappa Opioid Receptor In Com 7e-13
4gbr_A309 N-terminal T4 Lysozyme Fusion Facilitates Crystalli 2e-12
3d4s_A 490 Cholesterol Bound Form Of Human Beta2 Adrenergic Re 3e-12
4ej4_A 461 Structure Of The Delta Opioid Receptor Bound To Nal 6e-12
3oe6_A 508 Crystal Structure Of The Cxcr4 Chemokine Receptor I 7e-12
3odu_A 502 The 2.5 A Structure Of The Cxcr4 Chemokine Receptor 7e-12
3oe0_A 499 Crystal Structure Of The Cxcr4 Chemokine Receptor I 7e-12
3sn6_R514 Crystal Structure Of The Beta2 Adrenergic Receptor- 2e-11
4dkl_A 464 Crystal Structure Of The Mu-Opioid Receptor Bound T 4e-11
4daj_A 479 Structure Of The M3 Muscarinic Acetylcholine Recept 5e-11
2vt4_A313 Turkey Beta1 Adrenergic Receptor With Stabilising M 6e-11
3p0g_A 501 Structure Of A Nanobody-Stabilized Active State Of 8e-11
2rh1_A 500 High Resolution Crystal Structure Of Human B2-Adren 8e-11
2y00_B315 Turkey Beta1 Adrenergic Receptor With Stabilising M 9e-11
3kj6_A366 Crystal Structure Of A Methylated Beta2 Adrenergic 1e-10
2r4r_A365 Crystal Structure Of The Human Beta2 Adrenoceptor L 1e-10
2r4s_A342 Crystal Structure Of The Human Beta2 Adrenoceptor L 1e-10
3pds_A 458 Irreversible Agonist-Beta2 Adrenoceptor Complex Len 2e-10
3uon_A 467 Structure Of The Human M2 Muscarinic Acetylcholine 9e-10
4ea3_B434 Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI 3e-09
3rze_A 452 Structure Of The Human Histamine H1 Receptor In Com 1e-08
3pbl_A 481 Structure Of The Human Dopamine D3 Receptor In Comp 3e-08
2ks9_A364 Solution Conformation Of Substance P In Water Compl 2e-06
2ziy_A372 Crystal Structure Of Squid Rhodopsin Length = 372 9e-06
2z73_A 448 Crystal Structure Of Squid Rhodopsin Length = 448 1e-05
3vw7_A 484 Crystal Structure Of Human Protease-Activated Recep 3e-05
2x72_A349 Crystal Structure Of The Constitutively Active E113 3e-05
4a4m_A349 Crystal Structure Of The Light-Activated Constituti 4e-05
3oax_A349 Crystal Structure Of Bovine Rhodopsin With Beta-Ion 5e-05
1jfp_A348 Structure Of Bovine Rhodopsin (Dark Adapted) Length 5e-05
2j4y_A349 Crystal Structure Of A Rhodopsin Stabilizing Mutant 5e-05
3c9m_A348 Structure Of A Mutant Bovine Rhodopsin In Hexagonal 5e-05
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480 Back     alignment and structure 
Iteration: 1

 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 80/154 (51%), Gaps = 10/154 (6%)
Query: 51  SIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPL 110
           S++F++ +  N  V+  ++ Y  ++T TN ++ NL  AD L   ++P      +   WP 
Sbjct: 30  SVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTTTMPFQSTVYLMNSWPF 89
Query: 111 GDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKL-TPHRVLLLTLGTWFIA 169
           GDVLCKI+    +   F  ++TLT++S+DRY  +  P       TP +  ++ +  W ++
Sbjct: 90  GDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLS 149
Query: 170 CVVFVPVVLW----FREQ-EVLESRLICTIVFPN 198
             V +  ++      RE  +V+E    C++ FP+
Sbjct: 150 SSVGISAIVLGGTKVREDVDVIE----CSLQFPD 179
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309 Back     alignment and structure
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490 Back     alignment and structure
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461 Back     alignment and structure
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Small Molecule Antagonist It1t In I222 Spacegroup Length = 508 Back     alignment and structure
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In Complex With Small Molecule Antagonist It1t Length = 502 Back     alignment and structure
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Cyclic Peptide Antagonist Cvx15 Length = 499 Back     alignment and structure
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514 Back     alignment and structure
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464 Back     alignment and structure
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479 Back     alignment and structure
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313 Back     alignment and structure
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501 Back     alignment and structure
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500 Back     alignment and structure
>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315 Back     alignment and structure
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366 Back     alignment and structure
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365 Back     alignment and structure
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342 Back     alignment and structure
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458 Back     alignment and structure
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467 Back     alignment and structure
>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434 Back     alignment and structure
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452 Back     alignment and structure
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481 Back     alignment and structure
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364 Back     alignment and structure
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372 Back     alignment and structure
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448 Back     alignment and structure
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1 (Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom Length = 484 Back     alignment and structure
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349 Back     alignment and structure
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349 Back     alignment and structure
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349 Back     alignment and structure
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348 Back     alignment and structure
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349 Back     alignment and structure
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query331
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 3e-50
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 4e-46
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 8e-43
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 8e-37
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 7e-36
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 5e-34
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 3e-33
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 1e-32
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 2e-29
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 6e-29
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 2e-28
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 6e-28
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 4e-27
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 6e-27
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 7e-27
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
 Score =  170 bits (432), Expect = 3e-50
 Identities = 63/292 (21%), Positives = 128/292 (43%), Gaps = 8/292 (2%)

Query: 28  YFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTA 87
              +   +F    +++       ++I + S+  N+ V+  ++ +  ++TVTNYFL+NL  
Sbjct: 17  TNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAF 76

Query: 88  ADILFCL-SIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVV 146
           A+      +        V  +W  G   CK   +      F  ++++T ++ DRY  I+ 
Sbjct: 77  AEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIH 136

Query: 147 PPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVST 206
            P + +L+     ++    W +A ++  P    +   E + SR++C I +P  P      
Sbjct: 137 -PLQPRLSATATKVVICVIWVLALLLAFPQGY-YSTTETMPSRVVCMIEWPEHPNKIYEK 194

Query: 207 AFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHAR-HTRVMRMLCISV 265
            + + + VL   LPL ++ Y Y  +   L  ++   + S           +V++M+ + V
Sbjct: 195 VYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVV 254

Query: 266 CVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNP 317
           C     WLP  +  +L YI+           +    +L  + LA+++T+ NP
Sbjct: 255 CTFAICWLPFHIFFLLPYINPDLYLKKFIQQV----YLAIMWLAMSSTMYNP 302
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query331
4grv_A510 Neurotensin receptor type 1, lysozyme chimera; G-p 100.0
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 100.0
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 100.0
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 100.0
3vw7_A484 Proteinase-activated receptor 1, lysozyme; high re 100.0
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 100.0
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 100.0
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 100.0
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 100.0
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 100.0
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 100.0
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 100.0
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 100.0
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 100.0
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 100.0
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 100.0
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 100.0
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 100.0
2koe_A40 Human cannabinoid receptor 1 - helix 7/8 peptide; 98.19
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.15
2ki9_A33 Cannabinoid receptor 2; GPCR, G-protein coupled re 97.97
2lot_A64 Apelin receptor; membrane protein; NMR {Homo sapie 96.64
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=5e-48  Score=349.90  Aligned_cols=289  Identities=18%  Similarity=0.309  Sum_probs=233.9

Q ss_pred             CchhhHHHHHHHHHHHHHHHhhhcceeeeeeeecCCCC---chhhHHHHHHHHHHHHHHh-Hhhhhhhhhcc--CCCCch
Q psy5549          38 NREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQ---TVTNYFLLNLTAADILFCL-SIPGIMYARVS--PQWPLG  111 (331)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~g~~~N~~vi~~i~~~~~~~---~~~~~~i~~lai~Dll~~~-~~p~~~~~~~~--~~~~~~  111 (331)
                      .+.+.+.+..++|.+++++|++||+++++++.++|++|   ++.|++++|||++|++.++ .+|+.+.....  +.|.+|
T Consensus        27 ~~~~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g  106 (510)
T 4grv_A           27 TDIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFG  106 (510)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhh
Confidence            45566788889999999999999999999998877655   6789999999999999998 99998877653  469999


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCc--cchhhHHHHHHHHHHHHHHHhhhhhhheeceeec---
Q psy5549         112 DVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSK--LTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVL---  186 (331)
Q Consensus       112 ~~~C~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~--~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~---  186 (331)
                      +..|++..++..++..+|++++++||+|||+||+ +|++|+  .+++++..+++++|++++++++|.++.+......   
T Consensus       107 ~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~-~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~  185 (510)
T 4grv_A          107 DAGCRGYYFLRDACTYATALNVASLSVARYLAIC-HPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADG  185 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHheEEEe-ccccccccccccccceeehHHHHHHHHHHHHHHHhhcccccccCC
Confidence            9999999999999999999999999999999999 999988  8999999999999999999999999987655422   


Q ss_pred             --cceeEEeeeCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhc---------------------
Q psy5549         187 --ESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWE---------------------  243 (331)
Q Consensus       187 --~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~---------------------  243 (331)
                        .....|...++...    ...+..+..++.+++|+++++++|.+|.++++++.+...                     
T Consensus       186 ~~~~~~~c~~~~~~~~----~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (510)
T 4grv_A          186 THPGGLVCTPIVDTAT----VKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVNIFEMLRIDEGLRLKIYKDTEGYYT  261 (510)
T ss_dssp             CCGGGEEEEECSCHHH----HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCTHHHHHHHHTCCEEEEEECTTSCEE
T ss_pred             CCCCccccccccccch----hhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccc
Confidence              23446766554321    455667777888999999999999999999986533100                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy5549         244 --------------------------------------------------------------------------------  243 (331)
Q Consensus       244 --------------------------------------------------------------------------------  243 (331)
                                                                                                      
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  341 (510)
T 4grv_A          262 IGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQM  341 (510)
T ss_dssp             EETTEECCCSSSHHHHHHSCCC---CCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCSHHHHHHHHHHHHH
T ss_pred             cccccccCCCCCCCccccccCcCCCCCCCCcccCCccccccCCCCcccccccccCCCCCCCcCccccccccccCCccccC
Confidence                                                                                            


Q ss_pred             ----------------------------------------------------cccccchhhhhhhHHHHHHHHHHHHHHh
Q psy5549         244 ----------------------------------------------------HSHLSSHHARHTRVMRMLCISVCVILAM  271 (331)
Q Consensus       244 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~f~i~  271 (331)
                                                                          .....+..++|+|++|++++++++|++|
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~erk~~k~L~iVv~~F~iC  421 (510)
T 4grv_A          342 GETGVAGFTNSLRMLNNKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSGSVQALRHGVLVARAVVIAFVVC  421 (510)
T ss_dssp             HHHHHTTCHHHHHHHTTTCHHHHHHHHHSSCSCCSSHHHHHHHHHHHHHSSSGGGTTSTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCccccccccCCCcccccccccccccccCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                0001112256789999999999999999


Q ss_pred             hhhHHHHHHHHHhcCCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccCC
Q psy5549         272 WLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF  331 (331)
Q Consensus       272 ~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~~  331 (331)
                      |+|+++..++..+...............++..++.+|+++||++||+||+++|++|||+|
T Consensus       422 WlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR~aF  481 (510)
T 4grv_A          422 WLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQVF  481 (510)
T ss_dssp             HHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC-
T ss_pred             HHHHHHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            999999999988876655444323333356778889999999999999999999999987
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic} Back     alignment and structure
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 331
d1u19a_348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 5e-18
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.6 bits (200), Expect = 5e-18
 Identities = 52/271 (19%), Positives = 102/271 (37%), Gaps = 10/271 (3%)

Query: 48  CLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLS-IPGIMYARVSP 106
             + ++ +L    N   L   + +  L+T  NY LLNL  AD+          +Y  +  
Sbjct: 42  AYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHG 101

Query: 107 QWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTW 166
            +  G   C +  +   + G + LW+L +++++RY  +  P    +   +  ++    TW
Sbjct: 102 YFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTW 161

Query: 167 FIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVY 226
            +A     P ++ +        +  C I +      + + +F + M V+  ++PL ++ +
Sbjct: 162 VMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFF 221

Query: 227 YYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDG 286
            Y  +   + E   + + S   +       V RM+ I V   L  WLP       I+   
Sbjct: 222 CYGQLVFTVKEAAAQQQESA--TTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQ 279

Query: 287 RRPTADTEFFLRSHHFLWPLLLALANTVVNP 317
                             P   A  + V NP
Sbjct: 280 GSDFGPI-------FMTIPAFFAKTSAVYNP 303

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query331
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 100.0
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.7e-42  Score=292.84  Aligned_cols=286  Identities=19%  Similarity=0.359  Sum_probs=246.9

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHhhhcceeeeeeeecCCCCchhhHHHHHHHHHHHHHHh-HhhhhhhhhccCCCCchhhh
Q psy5549          36 FGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVL  114 (331)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~~~N~~vi~~i~~~~~~~~~~~~~i~~lai~Dll~~~-~~p~~~~~~~~~~~~~~~~~  114 (331)
                      ...+++...+.+.++.+++++|++||+++++++.++|++|++.|++++|||++|++.++ ..|..+.....+.|..+...
T Consensus        30 ~~~~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~  109 (348)
T d1u19a_          30 YLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTG  109 (348)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccCchh
Confidence            34556677888999999999999999999999999999999999999999999999998 88888888888888899999


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCc-cchhhHHHHHHHHHHHHHHHhhhhhhheeceeeccceeEEe
Q psy5549         115 CKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSK-LTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICT  193 (331)
Q Consensus       115 C~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~-~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~  193 (331)
                      |+...+....+..++.++++++++|||.+++ +|++++ .++++....++.+|..+.++..|+.+.......+.....|.
T Consensus       110 c~~~~~~~~~~~~~s~~~l~~is~~R~~~i~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (348)
T d1u19a_         110 CNLEGFFATLGGEIALWSLVVLAIERYVVVC-KPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCG  188 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCSSSCCCCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEETTTTEEE
T ss_pred             hhhhhhccccceeeecchhhhhhcccceeee-ccccccccccccccccceeeehhhhheecccccccceeccCCcccccc
Confidence            9999999999999999999999999999999 999888 88888888889999999999999888877776677777777


Q ss_pred             eeCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccccchhhhhhhHHHHHHHHHHHHHHhhh
Q psy5549         194 IVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWL  273 (331)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~  273 (331)
                      ..............+......+..++|+++++++|.++.+++|++.++  .++..++.++++|.+|+++.++++|++||+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~  266 (348)
T d1u19a_         189 IDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQ--QQESATTQKAEKEVTRMVIIMVIAFLICWL  266 (348)
T ss_dssp             CCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCS--SCSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--cchhhhhHHHHhhHhheEEEeehHHHHHhh
Confidence            766655554446677778888888999999999999999888877664  233344557789999999999999999999


Q ss_pred             hHHHHHHHHHhcCCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccCC
Q psy5549         274 PIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF  331 (331)
Q Consensus       274 P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~~  331 (331)
                      |+.+..++............       ...+..++..+|+++||+||++++++|||++
T Consensus       267 P~~i~~~~~~~~~~~~~~~~-------~~~~~~~l~~~ns~iNPiIY~~~~~~fR~~~  317 (348)
T d1u19a_         267 PYAGVAFYIFTHQGSDFGPI-------FMTIPAFFAKTSAVYNPVIYIMMNKQFRNCM  317 (348)
T ss_dssp             HHHHHHHHHHHTTTSCCCHH-------HHHHHHHHGGGGGTHHHHHHHHTCHHHHHHH
T ss_pred             HHHhhhheeeccCCccccHH-------HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            99999888777666555443       6678889999999999999999999999863