Psyllid ID: psy5551

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
MVYSCSWPVYQIYSGMTVDLINIEILTYLFTAICLSSREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEPIEDLEAAQM
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHcc
cEEEccccEEEEcccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHccccHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHcc
mvyscswpvyqiysgmtVDLINIEILTYLFTAICLSSREFELQIrtydgpdplqLRFDYVQWLEqsypclgpetniipFLEETLVAFKNIeqykqdprYVSLVIKYigtqpnpleIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLglnahaepiedlEAAQM
MVYSCSWPVYQIYSGMTVDLINIEILTYLFTAICLSSREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEPIEDLEAAQM
MVYSCSWPVYQIYSGMTVDLINIEILTYLFTAICLSSREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEPIEDLEAAQM
*VYSCSWPVYQIYSGMTVDLINIEILTYLFTAICLSSREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNA*************
****CSWP**********************************QIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEPIEDLE****
MVYSCSWPVYQIYSGMTVDLINIEILTYLFTAICLSSREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEPIEDLEAAQM
MVYSCSWPVYQIYSGMTVDLINIEILTYLFTAICLSSREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEPIEDL*****
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MVYSCSWPVYQIYSGMTVDLINIEILTYLFTAICLSSREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEPIEDLEAAQM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query172 2.2.26 [Sep-21-2011]
Q9Z1S0 1052 Mitotic checkpoint serine yes N/A 0.808 0.132 0.388 8e-23
O60566 1050 Mitotic checkpoint serine yes N/A 0.767 0.125 0.378 3e-22
Q54CV5 1306 Probable inactive serine/ yes N/A 0.784 0.103 0.325 5e-17
O08901 1058 Mitotic checkpoint serine no N/A 0.75 0.121 0.282 7e-14
O43683 1085 Mitotic checkpoint serine no N/A 0.738 0.117 0.310 2e-13
O59767 310 Mitotic spindle checkpoin yes N/A 0.662 0.367 0.269 6e-09
P47074 515 Spindle assembly checkpoi yes N/A 0.686 0.229 0.296 4e-08
P41695 1021 Checkpoint serine/threoni no N/A 0.697 0.117 0.289 7e-07
>sp|Q9Z1S0|BUB1B_MOUSE Mitotic checkpoint serine/threonine-protein kinase BUB1 beta OS=Mus musculus GN=Bub1b PE=1 SV=2 Back     alignment and function desciption
 Score =  106 bits (264), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 54/139 (38%), Positives = 83/139 (59%)

Query: 31  TAICLSSREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNI 90
           TA+    R FE +IR Y G DPL +   Y+ W EQ+YP  G E+N+   +E  + A +  
Sbjct: 47  TALQQQKRAFESEIRFYSGDDPLDVWDRYINWTEQNYPQGGKESNMSALVERAIEALQGE 106

Query: 91  EQYKQDPRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQAN 150
            +Y  DPR++SL IK       PL++Y+ + S+ IG  LA FY +WAE  +A  + K+A+
Sbjct: 107 TRYYNDPRFLSLWIKLGHLCNEPLDMYSYLQSQGIGVSLAQFYISWAEEYEARENFKKAD 166

Query: 151 HVFQLGLNAHAEPIEDLEA 169
            +FQ G+   AEP++ L++
Sbjct: 167 IIFQEGIERKAEPLDRLQS 185
Essential component of the mitotic checkpoint. Required for normal mitosis progression and tumor suppression. The mitotic checkpoint delays anaphase until all chromosomes are properly attached to the mitotic spindle. One of its checkpoint functions is to inhibit the activity of the anaphase-promoting complex/cyclosome (APC/C) by blocking the binding of CDC20 to APC/C, independently of its kinase activity. The other is to monitor kinetochore activities that depend on the kinetochore motor CENPE. Required for kinetochore localization of CENPE. Negatively regulates PLK1 activity in interphase cells and suppresses centrosome amplification. Also implicated in triggering apoptosis in polyploid cells that exit aberrantly from mitotic arrest. Essential for tumor suppression. May play a role in regulating aging and fertility.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1
>sp|O60566|BUB1B_HUMAN Mitotic checkpoint serine/threonine-protein kinase BUB1 beta OS=Homo sapiens GN=BUB1B PE=1 SV=3 Back     alignment and function description
>sp|Q54CV5|BUB1_DICDI Probable inactive serine/threonine-protein kinase bub1 OS=Dictyostelium discoideum GN=bub1 PE=3 SV=1 Back     alignment and function description
>sp|O08901|BUB1_MOUSE Mitotic checkpoint serine/threonine-protein kinase BUB1 OS=Mus musculus GN=Bub1 PE=2 SV=1 Back     alignment and function description
>sp|O43683|BUB1_HUMAN Mitotic checkpoint serine/threonine-protein kinase BUB1 OS=Homo sapiens GN=BUB1 PE=1 SV=1 Back     alignment and function description
>sp|O59767|MAD3_SCHPO Mitotic spindle checkpoint component mad3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mad3 PE=1 SV=2 Back     alignment and function description
>sp|P47074|MAD3_YEAST Spindle assembly checkpoint component MAD3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAD3 PE=1 SV=1 Back     alignment and function description
>sp|P41695|BUB1_YEAST Checkpoint serine/threonine-protein kinase BUB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BUB1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query172
193620275 1150 PREDICTED: hypothetical protein LOC10016 0.779 0.116 0.492 5e-35
195119906 1619 GI19597 [Drosophila mojavensis] gi|19390 0.930 0.098 0.375 7e-28
195401477 1514 GJ18402 [Drosophila virilis] gi|19414234 0.930 0.105 0.375 1e-27
357616153 1583 Bub1 [Danaus plexippus] 0.813 0.088 0.457 4e-27
449272311 1077 Mitotic checkpoint serine/threonine-prot 0.831 0.132 0.412 2e-26
326919848 1086 PREDICTED: LOW QUALITY PROTEIN: mitotic 0.831 0.131 0.412 1e-25
170056434 1094 Bub1 [Culex quinquefasciatus] gi|1678761 0.773 0.121 0.447 1e-25
45383352 1085 mitotic checkpoint serine/threonine-prot 0.831 0.131 0.419 2e-25
60099013 508 hypothetical protein RCJMB04_19f17 [Gall 0.831 0.281 0.419 2e-25
332023487 1409 Mitotic checkpoint serine/threonine-prot 0.761 0.092 0.450 3e-25
>gi|193620275|ref|XP_001943333.1| PREDICTED: hypothetical protein LOC100160600 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 66/134 (49%), Positives = 100/134 (74%)

Query: 39  EFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPR 98
           +++  IRTY+G DPL   F+Y++WLEQ Y   GPE+N+ P +EET+  FKN E+YKQDPR
Sbjct: 65  KYDHAIRTYEGDDPLAPHFEYIKWLEQIYLKHGPESNLWPLIEETVQKFKNDEKYKQDPR 124

Query: 99  YVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLN 158
           +++++I +I  Q N +E+Y  VY++ IGT  A+FY+AWAE+LD +ND K+ + +F LG+ 
Sbjct: 125 FITILINFIENQSNAIELYQTVYNQGIGTMCALFYRAWAELLDRYNDFKRVDQIFLLGIK 184

Query: 159 AHAEPIEDLEAAQM 172
           A AEP+++LE A +
Sbjct: 185 AKAEPVDELEQAHL 198

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195119906|ref|XP_002004470.1| GI19597 [Drosophila mojavensis] gi|193909538|gb|EDW08405.1| GI19597 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|195401477|ref|XP_002059339.1| GJ18402 [Drosophila virilis] gi|194142345|gb|EDW58751.1| GJ18402 [Drosophila virilis] Back     alignment and taxonomy information
>gi|357616153|gb|EHJ70037.1| Bub1 [Danaus plexippus] Back     alignment and taxonomy information
>gi|449272311|gb|EMC82289.1| Mitotic checkpoint serine/threonine-protein kinase BUB1 beta [Columba livia] Back     alignment and taxonomy information
>gi|326919848|ref|XP_003206189.1| PREDICTED: LOW QUALITY PROTEIN: mitotic checkpoint serine/threonine-protein kinase BUB1 beta-like [Meleagris gallopavo] Back     alignment and taxonomy information
>gi|170056434|ref|XP_001864028.1| Bub1 [Culex quinquefasciatus] gi|167876125|gb|EDS39508.1| Bub1 [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|45383352|ref|NP_989734.1| mitotic checkpoint serine/threonine-protein kinase BUB1 beta [Gallus gallus] gi|29725501|gb|AAO89240.1| spindle checkpoint protein BubR1 [Gallus gallus] Back     alignment and taxonomy information
>gi|60099013|emb|CAH65337.1| hypothetical protein RCJMB04_19f17 [Gallus gallus] Back     alignment and taxonomy information
>gi|332023487|gb|EGI63729.1| Mitotic checkpoint serine/threonine-protein kinase BUB1 [Acromyrmex echinatior] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query172
UNIPROTKB|F1NEE4 1086 BUB1B "Uncharacterized protein 0.808 0.127 0.424 1.9e-25
UNIPROTKB|F1NYN1 1087 BUB1B "Uncharacterized protein 0.808 0.127 0.424 1.9e-25
FB|FBgn0263855 1484 BubR1 "Bub1-related kinase" [D 0.773 0.089 0.398 9.4e-24
UNIPROTKB|F1PLV9 1052 BUB1B "Uncharacterized protein 0.802 0.131 0.4 1.1e-22
MGI|MGI:1333889 1052 Bub1b "budding uninhibited by 0.802 0.131 0.4 2.9e-22
UNIPROTKB|F1MWP1 1062 BUB1B "Uncharacterized protein 0.802 0.129 0.392 6.2e-22
UNIPROTKB|F1LMI1 1052 Bub1b "Protein Bub1b" [Rattus 0.75 0.122 0.412 7.8e-22
UNIPROTKB|O60566 1050 BUB1B "Mitotic checkpoint seri 0.761 0.124 0.390 1.3e-21
DICTYBASE|DDB_G0292676 1306 bub1 "BUB family protein kinas 0.761 0.100 0.335 1.1e-16
CGD|CAL0003517 900 BUB1 [Candida albicans (taxid: 0.755 0.144 0.296 5.9e-16
UNIPROTKB|F1NEE4 BUB1B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 301 (111.0 bits), Expect = 1.9e-25, P = 1.9e-25
 Identities = 59/139 (42%), Positives = 88/139 (63%)

Query:    31 TAICLSSREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNI 90
             TA  L  +EFE +IR Y G DPL +   Y++W EQ++P  G E+N+   LE  + A    
Sbjct:    41 TAAQLRKQEFESEIRFYSGDDPLDVWDRYIKWTEQTFPQGGKESNLSAVLERAVKALNKQ 100

Query:    91 EQYKQDPRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQAN 150
             ++Y QDPRY+SL +K+      PL++Y+ ++S+ IGT LA  Y  WAE L+A    K+A+
Sbjct:   101 QRYYQDPRYLSLWLKFGNCCNEPLDLYSYLHSQEIGTTLAQLYITWAEELEARGSFKKAD 160

Query:   151 HVFQLGLNAHAEPIEDLEA 169
              +FQ GLN  AEP++ L++
Sbjct:   161 IIFQEGLNRKAEPLDKLQS 179
GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA
UNIPROTKB|F1NYN1 BUB1B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0263855 BubR1 "Bub1-related kinase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1PLV9 BUB1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1333889 Bub1b "budding uninhibited by benzimidazoles 1 homolog, beta (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MWP1 BUB1B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1LMI1 Bub1b "Protein Bub1b" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O60566 BUB1B "Mitotic checkpoint serine/threonine-protein kinase BUB1 beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292676 bub1 "BUB family protein kinase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0003517 BUB1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.11.1LOW CONFIDENCE prediction!
3rd Layer2.7.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query172
smart00777124 smart00777, Mad3_BUB1_I, Mad3/BUB1 hoMad3/BUB1 hom 7e-39
pfam08311124 pfam08311, Mad3_BUB1_I, Mad3/BUB1 homology region 2e-35
>gnl|CDD|214817 smart00777, Mad3_BUB1_I, Mad3/BUB1 hoMad3/BUB1 homology region 1 Back     alignment and domain information 
 Score =  128 bits (324), Expect = 7e-39
 Identities = 49/120 (40%), Positives = 80/120 (66%), Gaps = 1/120 (0%)

Query: 38  REFELQIRT-YDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQD 96
           + FE +++  Y+G DPL L   Y++W E++YP  G E+ ++  LE  +  F++ E+YK D
Sbjct: 5   QAFEAELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKND 64

Query: 97  PRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLG 156
           PRY+ + +KY      P E++  +YS+ IGTKLA+FY+ WA++L+A    K+A+ V+QLG
Sbjct: 65  PRYLKIWLKYAEYCDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQLG 124

Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p. Length = 124
>gnl|CDD|191994 pfam08311, Mad3_BUB1_I, Mad3/BUB1 homology region 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 172
smart00777125 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 100.0
PF08311126 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro 100.0
KOG1166|consensus 974 99.97
PF15297 353 CKAP2_C: Cytoskeleton-associated protein 2 C-termi 96.81
PF05843 280 Suf: Suppressor of forked protein (Suf); InterPro: 96.56
KOG1915|consensus 677 96.41
KOG1258|consensus 577 94.96
KOG2396|consensus 568 94.46
KOG1915|consensus 677 94.46
KOG2047|consensus 835 94.21
PF05843 280 Suf: Suppressor of forked protein (Suf); InterPro: 93.07
KOG1070|consensus 1710 92.22
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 90.13
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 89.3
PF1342844 TPR_14: Tetratricopeptide repeat 89.13
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 88.61
COG5191 435 Uncharacterized conserved protein, contains HAT (H 86.7
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 85.35
PF02631121 RecX: RecX family; InterPro: IPR003783 RecX is a p 84.58
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 84.36
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 84.16
KOG2047|consensus 835 83.96
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 83.95
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 82.1
cd0268275 MIT_AAA_Arch MIT: domain contained within Microtub 81.92
PRK14136309 recX recombination regulator RecX; Provisional 81.32
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 80.02
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 Back     alignment and domain information 
Probab=100.00  E-value=2.5e-54  Score=331.56  Aligned_cols=123  Identities=40%  Similarity=0.833  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHH-hcCCCCCChHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhhcccccccchhHHHHHHHHhhcCCC
Q psy5551          34 CLSSREFELQI-RTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQPN  112 (172)
Q Consensus        34 ~~~r~~fE~~i-~~~~~dDPL~~w~~YI~W~~~~yp~~~~~s~l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~~d  112 (172)
                      +++|++||++| +.++|||||++|++||+|++++||+|+++|+|.++|||||++|+++++||||+|||||||+||++++|
T Consensus         2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~~d   81 (125)
T smart00777        2 EQQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNCDE   81 (125)
T ss_pred             hHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhcCC
Confidence            46799999999 66999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy5551         113 PLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLG  156 (172)
Q Consensus       113 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~G  156 (172)
                      |.+||+||+++|||+++|+||++||.++|.+|++++|++||++|
T Consensus        82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~G  125 (125)
T smart00777       82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQLG  125 (125)
T ss_pred             HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence            99999999999999999999999999999999999999999998

Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division Back     alignment and domain information
>KOG1166|consensus Back     alignment and domain information
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>KOG1915|consensus Back     alignment and domain information
>KOG1258|consensus Back     alignment and domain information
>KOG2396|consensus Back     alignment and domain information
>KOG1915|consensus Back     alignment and domain information
>KOG2047|consensus Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>KOG1070|consensus Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein [] Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>KOG2047|consensus Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules Back     alignment and domain information
>PRK14136 recX recombination regulator RecX; Provisional Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query172
3si5_A176 Kinetochore-Bubr1 Kinase Complex Length = 176 9e-24
2wvi_A164 Crystal Structure Of The N-Terminal Domain Of Bubr1 9e-24
2lah_A160 Solution Nmr Structure Of Mitotic Checkpoint Serine 1e-14
4a1g_A152 The Crystal Structure Of The Human Bub1 Tpr Domain 2e-14
4aez_C223 Crystal Structure Of Mitotic Checkpoint Complex Len 3e-10
3esl_A202 Crystal Structure Of The Conserved N-Terminal Domai 5e-09
>pdb|3SI5|A Chain A, Kinetochore-Bubr1 Kinase Complex Length = 176 Back     alignment and structure 
Iteration: 1

 Score =  105 bits (263), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 82/133 (61%)
Query: 37  SREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQD 96
            R FE +IR Y G DPL +   Y+ W EQ+YP  G E+N+   LE  + A +  ++Y  D
Sbjct: 15  KRAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSD 74
Query: 97  PRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLG 156
           PR+++L +K       PL++Y+ ++++ IG  LA FY +WAE  +A  + ++A+ +FQ G
Sbjct: 75  PRFLNLWLKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEG 134
Query: 157 LNAHAEPIEDLEA 169
           +   AEP+E L++
Sbjct: 135 IQQKAEPLERLQS 147
>pdb|2WVI|A Chain A, Crystal Structure Of The N-Terminal Domain Of Bubr1 Length = 164 Back     alignment and structure
>pdb|2LAH|A Chain A, Solution Nmr Structure Of Mitotic Checkpoint SerineTHREONINE-Protein Kinase Bub1 N-Terminal Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr5460a (Methods Development) Length = 160 Back     alignment and structure
>pdb|4A1G|A Chain A, The Crystal Structure Of The Human Bub1 Tpr Domain In Complex With The Ki Motif Of Knl1 Length = 152 Back     alignment and structure
>pdb|4AEZ|C Chain C, Crystal Structure Of Mitotic Checkpoint Complex Length = 223 Back     alignment and structure
>pdb|3ESL|A Chain A, Crystal Structure Of The Conserved N-Terminal Domain Of The Mitotic Checkpoint Component Bub1 Length = 202 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query172
2wvi_A164 Mitotic checkpoint serine/threonine-protein kinase 3e-47
4a1g_A152 Mitotic checkpoint serine/threonine-protein kinas; 3e-43
4aez_C223 MAD3, mitotic spindle checkpoint component MAD3; c 3e-40
3esl_A202 Checkpoint serine/threonine-protein kinase BUB1; m 1e-38
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A Length = 164 Back     alignment and structure
 Score =  150 bits (380), Expect = 3e-47
 Identities = 50/134 (37%), Positives = 82/134 (61%)

Query: 38  REFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDP 97
           R FE +IR Y G DPL +   Y+ W EQ+YP  G E+N+   LE  + A +  ++Y  DP
Sbjct: 4   RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDP 63

Query: 98  RYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGL 157
           R+++L +K       PL++Y+ ++++ IG  LA FY +WAE  +A  + ++A+ +FQ G+
Sbjct: 64  RFLNLWLKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGI 123

Query: 158 NAHAEPIEDLEAAQ 171
              AEP+E L++  
Sbjct: 124 QQKAEPLERLQSQH 137
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A Length = 152 Back     alignment and structure
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 223 Back     alignment and structure
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Length = 202 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query172
4aez_C223 MAD3, mitotic spindle checkpoint component MAD3; c 100.0
2wvi_A164 Mitotic checkpoint serine/threonine-protein kinase 100.0
4a1g_A152 Mitotic checkpoint serine/threonine-protein kinas; 100.0
3esl_A202 Checkpoint serine/threonine-protein kinase BUB1; m 100.0
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 99.43
2ond_A 308 Cleavage stimulation factor 77 kDa subunit; HAT do 97.75
4e6h_A 679 MRNA 3'-END-processing protein RNA14; HAT domain, 97.49
4e6h_A 679 MRNA 3'-END-processing protein RNA14; HAT domain, 97.13
2ooe_A 530 Cleavage stimulation factor 77 kDa subunit; HAT do 96.63
2uy1_A 493 Cleavage stimulation factor 77; RNA-binding protei 96.57
2ooe_A 530 Cleavage stimulation factor 77 kDa subunit; HAT do 96.49
2uy1_A 493 Cleavage stimulation factor 77; RNA-binding protei 96.0
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 95.88
3edt_B 283 KLC 2, kinesin light chain 2; superhelical, struct 87.85
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 85.75
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 85.32
3k9i_A117 BH0479 protein; putative protein binding protein, 84.9
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 84.85
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 84.47
4i17_A228 Hypothetical protein; TPR repeats protein, structu 83.47
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 83.44
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 83.11
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 82.7
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 82.45
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 82.38
3q15_A378 PSP28, response regulator aspartate phosphatase H; 81.89
3q49_B137 STIP1 homology and U box-containing protein 1; E3 81.68
3u3w_A293 Transcriptional activator PLCR protein; ternary co 80.4
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 80.03
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=5.2e-62  Score=404.07  Aligned_cols=164  Identities=21%  Similarity=0.407  Sum_probs=157.3

Q ss_pred             cccccccCCCchhhhHHHHhh----hHHHHHHHHHHHHHHHhc-CCCCCChHHHHHHHHHHHHhCCCCC-CCCChHHHHH
Q psy5551           8 PVYQIYSGMTVDLINIEILTY----LFTAICLSSREFELQIRT-YDGPDPLQLRFDYVQWLEQSYPCLG-PETNIIPFLE   81 (172)
Q Consensus         8 pv~~~~sg~~~~~~~~~~~~~----~~~~l~~~r~~fE~~i~~-~~~dDPL~~w~~YI~W~~~~yp~~~-~~s~l~~lLE   81 (172)
                      ||+||++||+|+.|+..+..+    ..+.+.++|++||++|++ ++|||||++|++||+|++++||+|+ ++|+|.+|||
T Consensus        22 NIqPLr~GRs~~~L~~~l~~~~~~~~~~~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLE  101 (223)
T 4aez_C           22 NIEPRKAGHSASALAKSSSRNHTEKEVAGLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLE  101 (223)
T ss_dssp             GCCCCTTCCCHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHH
T ss_pred             hcCcccCCCCHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHH
Confidence            899999999999999998742    346799999999999998 5899999999999999999999987 4889999999


Q ss_pred             HHHHHhhcccccccchhHHHHHHHHhhcCCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551          82 ETLVAFKNIEQYKQDPRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA  161 (172)
Q Consensus        82 rc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A  161 (172)
                      |||++|+++++|+||+|||||||+||+++++|.+||.||+++|||+++|+||++||.+||.+|+|++|++||++||+++|
T Consensus       102 rc~~~F~~~~rYknD~RyLklWl~Ya~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A  181 (223)
T 4aez_C          102 RCTREFVRNPLYKDDVRYLRIWMQYVNYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA  181 (223)
T ss_dssp             HHHHHTTTCGGGTTCHHHHHHHHHHHTTCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcccccccCCHHHHHHHHHHHHccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHhc
Q psy5551         162 EPIEDLEAAQ  171 (172)
Q Consensus       162 ~P~~~L~~~h  171 (172)
                      +|+++|+++|
T Consensus       182 ~P~~rL~~~~  191 (223)
T 4aez_C          182 KPFLRFQQKY  191 (223)
T ss_dssp             BSHHHHHHHH
T ss_pred             ccHHHHHHHH
Confidence            9999999987
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A Back     alignment and structure
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A Back     alignment and structure
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query172
d2onda1 308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 98.27
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 96.96
d1n1ua_29 Kalata B1 {African plant (Oldenlandia affinis) [Ta 87.66
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 84.46
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=2.4e-06  Score=68.08  Aligned_cols=101  Identities=16%  Similarity=0.228  Sum_probs=72.9

Q ss_pred             hHHHHHHHHHHHHhCCCCCCC-----CChHHHHHHHHHHhhcccccccchhHHHHHHHHhhcC-----------------
Q psy5551          53 LQLRFDYVQWLEQSYPCLGPE-----TNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ-----------------  110 (172)
Q Consensus        53 L~~w~~YI~W~~~~yp~~~~~-----s~l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~-----------------  110 (172)
                      |+.|.+||+| +..-|.....     +.+..+.|||+..+..         +-+||+.|++++                 
T Consensus         8 ~~~W~~yi~~-E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~---------~~~lW~~y~~~~~~~~~~~~~~~~~~~~~   77 (308)
T d2onda1           8 VDMWKKYIQW-EKSNPLRTEDQTLITKRVMFAYEQCLLVLGH---------HPDIWYEAAQYLEQSSKLLAEKGDMNNAK   77 (308)
T ss_dssp             HHHHHHHHHH-HHTCTTCCCCHHHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             HHHHHHHHHH-HHhCcccccccchhHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHcCchHHHHHHHhhcc
Confidence            6899999999 4445542211     1255688999988644         446999999864                 


Q ss_pred             ---CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Q psy5551         111 ---PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEPI  164 (172)
Q Consensus       111 ---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~  164 (172)
                         +.+.++|+.-.... ......+|..+|.+++..|++++|..||.+++.......
T Consensus        78 ~~~~~a~~i~~ral~~~-~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~  133 (308)
T d2onda1          78 LFSDEAANIYERAISTL-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP  133 (308)
T ss_dssp             HHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT
T ss_pred             cchHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCh
Confidence               23556776655432 345667899999999999999999999999998665443
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1n1ua_ g.3.3.1 (A:) Kalata B1 {African plant (Oldenlandia affinis) [TaxId: 60225]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure