Psyllid ID: psy5567

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
Protein Sequence
AWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVGVGLIVVVGFIISAIQESKSKKKDKASRSSKKELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ
Secondary Structure (PSIPRED)
cccccccccEEEEEEEEccEEEEEcccccccccccccEEEEEEccccEEEEEEEEEEHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEEEEEEccccEEEEEEccccccccccccccHHHHHcccccccccccccccEEEEEEEEEEEEcccccccccccccccccccEEEEEEEEccEEEEEEEEcccccccccEEEEEEEEEEccccccccccccHHHHHcccccccEEEEccccccEEEccccEEEEcccccccccccccccEEEEEEEcccHHHHHHHHHHHHcccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEEccEEEEEEEccccccccccEEEEEEEEccEEEEEEEEEEEcccccccccccccccccccccccccccccccccccEEEEEEEEEEEccccEEEEEEcccccccEccccccccccccccccccccccccccccEEEEEEccccEEEEEcccccccEcccccccEEEEEEEEccEEEEEEEcccccccccccccEEEEEcccccccccccccHHHHHHHHcccccEEEEEEEEccEEEEEccEEEEccccccEEEEcccccEEEEEEEHHHHHHHHHHHHHHHHccccccEEEEEEEEE
Coil and Loop (DISEMBL)
awlglpigqhlslsatindefvaraytpvtsdehhgymDLVVKSVPSILVGVGLIVVVGFIISAIQEskskkkdkasrsskkelktlvdpdvkvplklkekieinhdtrcfrfelpsaehvlgkqvigfdarhrqkkknpianiltpfQRVSFWCSrvvsapeseppfhfawlglpigqhlslsatindefvaraytpvtsdehhgyMDLVVKVYFknvhpkfpdggkmsQFLEnmkvgepinvsgprgrlaylgngefhiravskkdpptnlkvtqlsmiaggtgitPMLQLVRHitkdptdntkMSLIFANQ
Flexible Loop (DISEMBL)
awlglpigqHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVGVGLIVVVGFIISAiqeskskkkdkasrsskkelktlvdpdvkvplklkekieinhdTRCFRFELPSAEHVLGKQVIGfdarhrqkkknpianiltpfqRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIravskkdpptnLKVTQLSMIAGGTGITPMLQLVRHItkdptdntkMSLIFANQ
Low Complexity Region (SEG)
AWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSilvgvglivvvgfiiSAIQEskskkkdkasrsskkELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ
Disordered region (IsUnstruct)
*WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVGVGLIVVVGFIISAI*************************DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIR****************************************************
Disordered Region (DISOPRED)
AWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVGVGLIVVVGFIISAIQESKS*********************VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARH********ANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVH*******KMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ
Disordered Region (DISEMBL)
AWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVGVGLIVVVGFIISAIQ*****************LKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ
Disordered Region (DISPRO)
*WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVGVGLIVVVGFII*********************LKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVI******RQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
AWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVGVGLIVVVGFIISAIQESKSKKKDKASRSSKKELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	314	2.2.26 [Sep-21-2011]
Q5PQA4	296	NADH-cytochrome b5 reduct	N/A	N/A	0.640	0.679	0.460	6e-54
Q6BCY4	276	NADH-cytochrome b5 reduct	yes	N/A	0.585	0.666	0.474	2e-53
Q5BJ68	304	NADH-cytochrome b5 reduct	yes	N/A	0.649	0.671	0.457	2e-53
Q6AY12	276	NADH-cytochrome b5 reduct	yes	N/A	0.579	0.659	0.474	7e-52
Q0P487	309	NADH-cytochrome b5 reduct	yes	N/A	0.671	0.682	0.451	7e-52
Q3KNK3	276	NADH-cytochrome b5 reduct	yes	N/A	0.579	0.659	0.474	8e-52
Q5ZHX7	304	NADH-cytochrome b5 reduct	no	N/A	0.563	0.582	0.467	6e-49
P83686	272	NADH-cytochrome b5 reduct	no	N/A	0.563	0.650	0.462	1e-48
P07514	301	NADH-cytochrome b5 reduct	yes	N/A	0.563	0.588	0.462	2e-48
Q3MHW9	305	NADH-cytochrome b5 reduct	no	N/A	0.589	0.606	0.443	2e-48

>sp|Q5PQA4|NB5R2_XENLA NADH-cytochrome b5 reductase 2 OS=Xenopus laevis GN=cyb5r2 PE=2 SV=1

 Score =  211 bits (537), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 123/267 (46%), Positives = 155/267 (58%), Gaps = 66/267 (24%)

Query: 49  LVGVGLIVVVGFIISAIQESKSKKKDKASRSSKKELKTLVDPDVKVPLKLKEKIEINHDT 108
           L  +G+ V++ F+I A+              +KK   TL+DP+ K PL L EK EI+HDT
Sbjct: 5   LAAIGVTVLL-FLIKAL-----------GSGAKKAPVTLLDPNAKYPLPLIEKQEISHDT 52

Query: 109 RCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPF 168
           + FRF LPSAEHV                                               
Sbjct: 53  KKFRFGLPSAEHV----------------------------------------------- 65

Query: 169 HFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK 228
               LGLP+GQH+ LSA +N   V RAYTPV+SDE  G++DLVVKVY+KNV+PKFPDGGK
Sbjct: 66  ----LGLPVGQHIYLSAKVNGSLVVRAYTPVSSDEVKGHVDLVVKVYYKNVNPKFPDGGK 121

Query: 229 MSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQ-LSMIAGGTGI 287
           MSQ L+++K+GE I+  GP G L Y G G+F IR   K +P   +KV + + M+AGGTGI
Sbjct: 122 MSQHLDSLKIGETIDFRGPNGLLVYKGKGKFAIRPDKKAEP--KIKVAKHVGMLAGGTGI 179

Query: 288 TPMLQLVRHITKDPTDNTKMSLIFANQ 314
           TPMLQL+R IT+DP DNTK  LIFANQ
Sbjct: 180 TPMLQLIRQITQDPNDNTKCYLIFANQ 206

NADH-cytochrome b5 reductases are involved in desaturation and elongation of fatty acids, cholesterol biosynthesis and drug metabolism.
Xenopus laevis (taxid: 8355)
EC: 1EC: .EC: 6EC: .EC: 2EC: .EC: 2

>sp|Q6BCY4|NB5R2_HUMAN NADH-cytochrome b5 reductase 2 OS=Homo sapiens GN=CYB5R2 PE=1 SV=1

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 112/236 (47%), Positives = 141/236 (59%), Gaps = 52/236 (22%)

Query: 79  SSKKELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKK 138
           S ++E  TL DP+ K PL L EK +I+H+TR FRF LPS +HV                 
Sbjct: 3   SRRREPITLQDPEAKYPLPLIEKEKISHNTRRFRFGLPSPDHV----------------- 45

Query: 139 NPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTP 198
                                             LGLP+G ++ L A I++E V RAYTP
Sbjct: 46  ----------------------------------LGLPVGNYVQLLAKIDNELVVRAYTP 71

Query: 199 VTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGE 258
           V+SD+  G++DL++K+YFKNVHP++P+GGKM+Q+LENMK+GE I   GPRGRL Y G G 
Sbjct: 72  VSSDDDRGFVDLIIKIYFKNVHPQYPEGGKMTQYLENMKIGETIFFRGPRGRLFYHGPGN 131

Query: 259 FHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
             IR     +P   L    L MIAGGTGITPMLQL+RHITKDP+D T+MSLIFANQ
Sbjct: 132 LGIRPDQTSEPKKTL-ADHLGMIAGGTGITPMLQLIRHITKDPSDRTRMSLIFANQ 186

NADH-cytochrome b5 reductases are involved in desaturation and elongation of fatty acids, cholesterol biosynthesis, drug metabolism, and, in erythrocyte, methemoglobin reduction (By similarity). Responsible for NADH-dependent lucigenin chemiluminescence in spermatozoa by reducing both lucigenin and 2-[4-iodophenyl]-3-[4-nitrophenyl]-5-[2,4-disulfophenyl]-2H tetrazolium monosodium salt (WST-1).

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|Q5BJ68|NB5R2_XENTR NADH-cytochrome b5 reductase 2 OS=Xenopus tropicalis GN=cyb5r2 PE=2 SV=1

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 124/271 (45%), Positives = 156/271 (57%), Gaps = 67/271 (24%)

Query: 47  SILVGVGLI--VVVGFIISAIQESKSKKKDKASRSSKKELKTLVDPDVKVPLKLKEKIEI 104
           ++LV + +I   V+ F+I A+              +KK   TL+DP+ K PL L EK EI
Sbjct: 8   NMLVALAVIGVTVLLFLIKAL-----------GSQAKKAPLTLLDPNAKYPLPLIEKQEI 56

Query: 105 NHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPES 164
           +HDT+ FRF LPS EHV                                           
Sbjct: 57  SHDTKKFRFGLPSQEHV------------------------------------------- 73

Query: 165 EPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFP 224
                   LGLP+GQH+ LSA IN   V RAYTPV+SDE  G++DL+VKVY+KNVHPKFP
Sbjct: 74  --------LGLPVGQHVYLSAKINGSLVVRAYTPVSSDEVKGHVDLIVKVYYKNVHPKFP 125

Query: 225 DGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQ-LSMIAG 283
           +GGKMSQ L+++K+GE I+  GP G L Y   G+F IR   K +P   LKV + + M+AG
Sbjct: 126 EGGKMSQHLDSLKIGETIDFRGPNGLLVYKEKGKFAIRPDKKSEP--KLKVAKHVGMLAG 183

Query: 284 GTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           GTGITPMLQL+R IT+DP DNTK SLIFANQ
Sbjct: 184 GTGITPMLQLIRQITQDPNDNTKCSLIFANQ 214

NADH-cytochrome b5 reductases are involved in desaturation and elongation of fatty acids, cholesterol biosynthesis and drug metabolism.

Xenopus tropicalis (taxid: 8364)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|Q6AY12|NB5R2_RAT NADH-cytochrome b5 reductase 2 OS=Rattus norvegicus GN=Cyb5r2 PE=2 SV=1

 Score =  204 bits (519), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 111/234 (47%), Positives = 139/234 (59%), Gaps = 52/234 (22%)

Query: 81  KKELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNP 140
           KK+L TL DP+ K PL L EK +INH+TR FRF LPS +HV                   
Sbjct: 5   KKDLITLQDPEAKYPLPLIEKEQINHNTRRFRFGLPSPDHV------------------- 45

Query: 141 IANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVT 200
                                           LGLP+G ++ L A IN+E V RAYTPV+
Sbjct: 46  --------------------------------LGLPVGNYVHLLAQINNELVIRAYTPVS 73

Query: 201 SDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFH 260
           SD+  G++DL++K+YFKNVHPK+P+GGKM+Q+LENMK+G+ I   GP GRL Y   G   
Sbjct: 74  SDDDQGFVDLIIKIYFKNVHPKYPEGGKMTQYLENMKIGDTILFRGPTGRLFYNEPGTLL 133

Query: 261 IRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           I+     +P   L V  L MIAGGTGITPMLQL+RHITKD +D T+MSL+FANQ
Sbjct: 134 IKTDKTSEPEKKL-VHHLGMIAGGTGITPMLQLIRHITKDTSDGTRMSLLFANQ 186

NADH-cytochrome b5 reductases are involved in desaturation and elongation of fatty acids, cholesterol biosynthesis, drug metabolism, and, in erythrocyte, methemoglobin reduction. Responsible for NADH-dependent lucigenin chemiluminescence in spermatozoa by reducing both lucigenin and 2-[4-iodophenyl]-3-[4-nitrophenyl]-5-[2,4-disulfophenyl]-2H tetrazolium monosodium salt (WST-1).

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|Q0P487|NB5R2_DANRE NADH-cytochrome b5 reductase 2 OS=Danio rerio GN=cyb5r2 PE=2 SV=2

 Score =  204 bits (519), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 121/268 (45%), Positives = 147/268 (54%), Gaps = 57/268 (21%)

Query: 48  ILVGVGLIVV-VGFIISAIQESKSKKKDKASRSSKKELKTLVDPDVKVPLKLKEKIEINH 106
           +L+GV ++V+ V ++      S S       +   K  K L DP VK PL L EK EINH
Sbjct: 8   VLIGVSIVVITVLYLFLKPAGSNST----PPKPQNKIPKALQDPSVKYPLPLIEKEEINH 63

Query: 107 DTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEP 166
           DT+ FRF LPS+ HV                                             
Sbjct: 64  DTKRFRFGLPSSSHV--------------------------------------------- 78

Query: 167 PFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDG 226
                 LGLPIGQH+ LSA +N   V RAYTPV+SD+  GY+DLVVKVY+KN HP +PDG
Sbjct: 79  ------LGLPIGQHIYLSAKVNGSLVVRAYTPVSSDQDQGYVDLVVKVYYKNTHPSYPDG 132

Query: 227 GKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTG 286
           GKMSQ+L+NMK+G+ I+  GP G L Y G G+F IR   KK      K   ++MIAGGTG
Sbjct: 133 GKMSQYLDNMKIGDTIDFRGPNGLLVYNGKGKFAIRP-DKKSEAEVRKFKHVAMIAGGTG 191

Query: 287 ITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           ITPMLQL+R IT D  D T  SLIFANQ
Sbjct: 192 ITPMLQLIRSITADSFDETVCSLIFANQ 219

NADH-cytochrome b5 reductases are involved in desaturation and elongation of fatty acids, cholesterol biosynthesis and drug metabolism.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|Q3KNK3|NB5R2_MOUSE NADH-cytochrome b5 reductase 2 OS=Mus musculus GN=Cyb5r2 PE=2 SV=2

 Score =  204 bits (519), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 111/234 (47%), Positives = 140/234 (59%), Gaps = 52/234 (22%)

Query: 81  KKELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNP 140
           KK+L TL DP+ K PL L EK +I+H+TR FRF LPS +HV                   
Sbjct: 5   KKDLITLQDPEAKYPLPLIEKEQISHNTRRFRFGLPSPDHV------------------- 45

Query: 141 IANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVT 200
                                           LGLP+G ++ L A IN+E V RAYTPV+
Sbjct: 46  --------------------------------LGLPVGNYVHLLAQINNELVIRAYTPVS 73

Query: 201 SDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFH 260
           SD+  G++DL++K+YFKNVHPK+P+GGKM+Q+LENMK+G+ I   GP GRL Y   G   
Sbjct: 74  SDDDQGFVDLIIKIYFKNVHPKYPEGGKMTQYLENMKIGDTILFRGPTGRLFYNEPGTLL 133

Query: 261 IRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           I+A    +P   L V  L MIAGGTGITPMLQL+RHITKD +D T+MSL+FANQ
Sbjct: 134 IKANKTSEPEKKL-VHHLGMIAGGTGITPMLQLIRHITKDTSDETRMSLLFANQ 186

NADH-cytochrome b5 reductases are involved in desaturation and elongation of fatty acids, cholesterol biosynthesis, drug metabolism, and, in erythrocyte, methemoglobin reduction. Responsible for NADH-dependent lucigenin chemiluminescence in spermatozoa by reducing both lucigenin and 2-[4-iodophenyl]-3-[4-nitrophenyl]-5-[2,4-disulfophenyl]-2H tetrazolium monosodium salt (WST-1).

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|Q5ZHX7|NB5R2_CHICK NADH-cytochrome b5 reductase 2 OS=Gallus gallus GN=CYB5R2 PE=2 SV=1

 Score =  194 bits (494), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 107/229 (46%), Positives = 132/229 (57%), Gaps = 52/229 (22%)

Query: 86  TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANIL 145
           TL DP  K PL L  K EI+HDT+ FRF LPS +HV                        
Sbjct: 38  TLRDPQAKYPLPLVGKEEISHDTKKFRFGLPSPDHV------------------------ 73

Query: 146 TPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHH 205
                                      LGLP+GQH+ LSA IN   V RAYTPV+SDE  
Sbjct: 74  ---------------------------LGLPVGQHVYLSAKINGNLVIRAYTPVSSDETK 106

Query: 206 GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVS 265
           GY+DL++KVY+KNV+PKFP+GGKMSQ+L++MK+G+ I+  GP G L Y G+G F I+   
Sbjct: 107 GYVDLIIKVYYKNVNPKFPEGGKMSQYLDSMKIGDVIDFRGPNGLLVYKGSGTFMIKPDK 166

Query: 266 KKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           K +         L +IAGGTGITPMLQL+RHIT DP D+TK  L+FANQ
Sbjct: 167 KSEAQRKF-AKHLGVIAGGTGITPMLQLIRHITSDPKDSTKCYLLFANQ 214

NADH-cytochrome b5 reductases are involved in desaturation and elongation of fatty acids, cholesterol biosynthesis and drug metabolism.

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|P83686|NB5R3_PIG NADH-cytochrome b5 reductase 3 (Fragment) OS=Sus scrofa GN=CYB5R3 PE=1 SV=1

 Score =  193 bits (491), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 106/229 (46%), Positives = 131/229 (57%), Gaps = 52/229 (22%)

Query: 86  TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANIL 145
           TL +PD+K PL+L +K  +NHDTR FRF LPS EH+                        
Sbjct: 6   TLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPEHI------------------------ 41

Query: 146 TPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHH 205
                                      LGLP+GQH+ LSA I+   V R YTPV+SD+  
Sbjct: 42  ---------------------------LGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDK 74

Query: 206 GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVS 265
           G++DLV+KVYFK+ HPKFP GGKMSQ+LE+MK+G+ I   GP G L Y G G+F IR   
Sbjct: 75  GFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRP-D 133

Query: 266 KKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           KK  P    V  + MIAGGTGITPMLQ++R I KDP D+T   L+FANQ
Sbjct: 134 KKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ 182

Desaturation and elongation of fatty acids, cholesterol biosynthesis, drug metabolism, and, in erythrocyte, methemoglobin reduction.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|P07514|NB5R3_BOVIN NADH-cytochrome b5 reductase 3 OS=Bos taurus GN=CYB5R3 PE=1 SV=3

 Score =  193 bits (490), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/229 (46%), Positives = 131/229 (57%), Gaps = 52/229 (22%)

Query: 86  TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANIL 145
           TL +PD+K PL+L +K  I+HDTR FRF LPS EH+                        
Sbjct: 35  TLENPDIKYPLRLIDKEVISHDTRRFRFALPSPEHI------------------------ 70

Query: 146 TPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHH 205
                                      LGLP+GQH+ LSA I+   V R YTPV+SD+  
Sbjct: 71  ---------------------------LGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDK 103

Query: 206 GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVS 265
           G++DLV+KVYFK+ HPKFP GGKMSQ+LE+MK+G+ I   GP G L Y G G+F IR   
Sbjct: 104 GFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDK 163

Query: 266 KKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           K DP     V  + MIAGGTGITPMLQ++R I KDP D+T   L+FANQ
Sbjct: 164 KSDPVIK-TVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ 211

Desaturation and elongation of fatty acids, cholesterol biosynthesis, drug metabolism, and, in erythrocyte, methemoglobin reduction.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|Q3MHW9|NB5R1_BOVIN NADH-cytochrome b5 reductase 1 OS=Bos taurus GN=CYB5R1 PE=2 SV=1

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 105/237 (44%), Positives = 136/237 (57%), Gaps = 52/237 (21%)

Query: 78  RSSKKELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKK 137
           R S++   TL+DP+ K  L+L +K  +NH+T+ FRF LP+A HVLG              
Sbjct: 31  RRSRRPPVTLLDPNEKYQLRLLDKTTVNHNTKRFRFALPTAHHVLG-------------- 76

Query: 138 KNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYT 197
                                                LP+G+H+ LSA I+   V R YT
Sbjct: 77  -------------------------------------LPVGKHVYLSARIDGSLVIRPYT 99

Query: 198 PVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNG 257
           PVTSDE  GY+DLV+KVY K VHPKFP+GGKMSQ+L+++K+G+ +   GP G L Y G G
Sbjct: 100 PVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKIGDVVEFRGPSGLLTYAGKG 159

Query: 258 EFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           +F+I+  +KK PP       L MIAGGTGITPMLQL+R I KDP D T+  L+FANQ
Sbjct: 160 KFNIQP-NKKAPPEARVARNLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQ 215

NADH-cytochrome b5 reductases are involved in desaturation and elongation of fatty acids, cholesterol biosynthesis, drug metabolism, and, in erythrocyte, methemoglobin reduction.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
326320025	309	NADH-cytochrome b5 reductase-like [Acyrt	0.675	0.686	0.479	3e-62
239788058	309	ACYPI000600 [Acyrthosiphon pisum]	0.675	0.686	0.479	4e-62
332373828	311	unknown [Dendroctonus ponderosae]	0.668	0.675	0.501	2e-61
321479226	311	NADH-cytochrome b5 reductase 2 [Daphnia	0.703	0.710	0.451	3e-56
357621612	318	hypothetical protein KGM_03818 [Danaus p	0.668	0.660	0.464	5e-56
48128966	313	PREDICTED: NADH-cytochrome b5 reductase	0.681	0.683	0.450	1e-55
312380898	322	hypothetical protein AND_06926 [Anophele	0.608	0.593	0.507	2e-55
308055648	322	NADPH cytochrome b5 reductase [Helicover	0.573	0.559	0.508	3e-55
325155524	312	NADPH cytochrome b5 reductase 1 [Helicov	0.573	0.576	0.508	3e-55
291384558	308	PREDICTED: cytochrome b5 reductase 2-lik	0.659	0.672	0.457	5e-55

>gi|326320025|ref|NP_001191880.1| NADH-cytochrome b5 reductase-like [Acyrthosiphon pisum] gi|326320027|ref|NP_001191881.1| NADH-cytochrome b5 reductase-like [Acyrthosiphon pisum]

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 130/271 (47%), Positives = 166/271 (61%), Gaps = 59/271 (21%)

Query: 44  SVPSILVGVGLIVVVGFIISAIQESKSKKKDKASRSSKKELKTLVDPDVKVPLKLKEKIE 103
           +V S+LVG+G++V  GF ISA   +  KK  K         +TLVD + K+PL L +K  
Sbjct: 8   TVSSVLVGLGIVVTTGFAISAFVANFQKKSQKK--------RTLVDSNTKIPLPLIQKHI 59

Query: 104 INHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPE 163
           I+HDTR FRFELPS  H+                                          
Sbjct: 60  ISHDTRRFRFELPSKNHI------------------------------------------ 77

Query: 164 SEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKF 223
                    LGLPIGQH+ LSA IN+E VARAYTPV+SD   GYMDLV+KVYF++ +PKF
Sbjct: 78  ---------LGLPIGQHIHLSARINEELVARAYTPVSSDNDVGYMDLVIKVYFRDQNPKF 128

Query: 224 PDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAG 283
           PDGGK++Q+LE M++G+ I+V GP GRL Y G G+F I+AV + DP  NL   ++SMIAG
Sbjct: 129 PDGGKLTQYLEKMEIGDTIDVRGPSGRLIYHGRGDFEIKAVKRIDPSHNLYAKKISMIAG 188

Query: 284 GTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           GTGITPMLQL+R +T+DP D TK+SL+FANQ
Sbjct: 189 GTGITPMLQLIRQVTRDPKDETKLSLLFANQ 219

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239788058|dbj|BAH70725.1| ACYPI000600 [Acyrthosiphon pisum]

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 130/271 (47%), Positives = 166/271 (61%), Gaps = 59/271 (21%)

Query: 44  SVPSILVGVGLIVVVGFIISAIQESKSKKKDKASRSSKKELKTLVDPDVKVPLKLKEKIE 103
           +V S+LVG+G++V  GF ISA   +  KK  K         +TLVD + K+PL L +K  
Sbjct: 8   TVSSVLVGLGIVVTTGFAISAFVANFQKKSQKK--------RTLVDSNTKIPLPLIQKHI 59

Query: 104 INHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPE 163
           I+HDTR FRFELPS  H+                                          
Sbjct: 60  ISHDTRRFRFELPSKNHI------------------------------------------ 77

Query: 164 SEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKF 223
                    LGLPIGQH+ LSA IN+E VARAYTPV+SD   GYMDLV+KVYF++ +PKF
Sbjct: 78  ---------LGLPIGQHIHLSARINEELVARAYTPVSSDNDVGYMDLVIKVYFRDQNPKF 128

Query: 224 PDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAG 283
           PDGGK++Q+LE M++G+ I+V GP GRL Y G G+F I+AV + DP  NL   ++SMIAG
Sbjct: 129 PDGGKLTQYLEKMEIGDTIDVRGPSGRLIYHGRGDFEIKAVKRIDPSHNLYAKKISMIAG 188

Query: 284 GTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           GTGITPMLQL+R +T+DP D TK+SL+FANQ
Sbjct: 189 GTGITPMLQLIRQVTRDPKDETKLSLLFANQ 219

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373828|gb|AEE62055.1| unknown [Dendroctonus ponderosae]

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 134/267 (50%), Positives = 161/267 (60%), Gaps = 57/267 (21%)

Query: 48  ILVGVGLIVVVGFIISAIQESKSKKKDKASRSSKKELKTLVDPDVKVPLKLKEKIEINHD 107
           I +GVG+I+    I    + SK+  K K  R        L DP VK  L L EK EI+HD
Sbjct: 12  IALGVGVILTTVVIYHFYKSSKTTNKSKGKRKV-----LLEDPQVKYSLPLIEKEEISHD 66

Query: 108 TRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPP 167
           TR FRF LPS EHV                                              
Sbjct: 67  TRRFRFGLPSKEHV---------------------------------------------- 80

Query: 168 FHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGG 227
                LGLPIGQH+ LSA I D+ + R+YTPV+SDE HG++DLVVKVYFKNVHP+FP+GG
Sbjct: 81  -----LGLPIGQHIHLSAKIGDDLIIRSYTPVSSDEDHGFVDLVVKVYFKNVHPRFPEGG 135

Query: 228 KMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGI 287
           KMSQ LEN+K+G+ I+V GP GRL Y G+G F I+ + +KDPP  +   Q+SMIAGGTGI
Sbjct: 136 KMSQHLENLKIGDKIDVRGPSGRLEYKGSGTFSIKKL-RKDPPQIITAKQVSMIAGGTGI 194

Query: 288 TPMLQLVRHITKDPTDNTKMSLIFANQ 314
           TPMLQL+RHITKDPTDNTK+ LIFANQ
Sbjct: 195 TPMLQLIRHITKDPTDNTKLKLIFANQ 221

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321479226|gb|EFX90182.1| NADH-cytochrome b5 reductase 2 [Daphnia pulex]

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 125/277 (45%), Positives = 169/277 (61%), Gaps = 56/277 (20%)

Query: 38  MDLVVKSVPSILVGVGLIVVVGFIISAIQESKSKKKDKASRSSKKELKTLVDPDVKVPLK 97
           MD + KS+P I+ G+G++V    + + +  +  + K+K+++  +KELKTL+DP  K PLK
Sbjct: 1   MDALGKSLP-IVTGIGIVVFTA-VAAKLYFNWLQPKEKSAK--QKELKTLLDPQTKYPLK 56

Query: 98  LKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSR 157
           L E+  INHDTR FRF LPS +HV                                    
Sbjct: 57  LIERHVINHDTRRFRFALPSPQHV------------------------------------ 80

Query: 158 VVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFK 217
                          LGLP+GQH+ LSA +ND+ V RAYTPV+ DE  GY DLVVKVYFK
Sbjct: 81  ---------------LGLPVGQHVYLSARVNDQLVIRAYTPVSCDEEKGYFDLVVKVYFK 125

Query: 218 NVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQ 277
           +V+PKFPDGGK++Q+LEN+ +GE I+V GP G L + G G F I+   KK P  N+   +
Sbjct: 126 DVNPKFPDGGKLTQYLENLAIGESIDVRGPSGLLVHQGPGLFAIKP-DKKSPSFNMGFKK 184

Query: 278 LSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           L+MIAGGTGITPMLQL+R I K+P D+T ++L++ANQ
Sbjct: 185 LNMIAGGTGITPMLQLIRQILKNPADSTCVALLYANQ 221

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357621612|gb|EHJ73388.1| hypothetical protein KGM_03818 [Danaus plexippus]

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 124/267 (46%), Positives = 162/267 (60%), Gaps = 57/267 (21%)

Query: 48  ILVGVGLIVVVGFIISAIQESKSKKKDKASRSSKKELKTLVDPDVKVPLKLKEKIEINHD 107
           + +G+G IVV+  ++S     +      ++  SKK+L TLVDP+ K PL L EK  I+HD
Sbjct: 19  VFIGIGSIVVITAVVSNYVWGRK-----SNSKSKKKLITLVDPNTKYPLPLIEKEVISHD 73

Query: 108 TRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPP 167
           TR FR  LP+ EHV                                              
Sbjct: 74  TRRFRLGLPTPEHV---------------------------------------------- 87

Query: 168 FHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGG 227
                LGLP+GQH+ LS  I+D+ + R+YTPV+SD+  GY+DLVVKVYFKNVHPKFP+GG
Sbjct: 88  -----LGLPVGQHIHLSVRIDDDLIIRSYTPVSSDDERGYVDLVVKVYFKNVHPKFPEGG 142

Query: 228 KMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGI 287
           KMSQ+LENMK+G+ I+V GP GRL Y GNG   I+ + +KDPP  + V +L+MIAGGTGI
Sbjct: 143 KMSQYLENMKIGDTIDVRGPSGRLQYAGNGTLLIKKL-RKDPPVKIVVKKLNMIAGGTGI 201

Query: 288 TPMLQLVRHITKDPTDNTKMSLIFANQ 314
           TPMLQL+R I KD  DNT++ L++ANQ
Sbjct: 202 TPMLQLIRQICKDENDNTQLRLLYANQ 228

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48128966|ref|XP_396639.1| PREDICTED: NADH-cytochrome b5 reductase 2-like isoform 1 [Apis mellifera]

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 123/273 (45%), Positives = 159/273 (58%), Gaps = 59/273 (21%)

Query: 42  VKSVPSILVGVGLIVVVGFIISAIQESKSKKKDKASRSSKKELKTLVDPDVKVPLKLKEK 101
           +  V S+L  VG I V+G  +   +   S KK       KK    LVDP VK  L L +K
Sbjct: 10  ISYVVSVLAAVGTIAVIGLAVKFYKCWNSDKK-------KKSPILLVDPVVKYSLPLIKK 62

Query: 102 IEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSA 161
             ++HDTR FRF LP+++H+LG                                      
Sbjct: 63  DILSHDTRKFRFALPTSDHILG-------------------------------------- 84

Query: 162 PESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHP 221
                        LPIGQH+ L+  I DE V R+YTPV+SD+ HGY+DLV+KVYFKNVHP
Sbjct: 85  -------------LPIGQHVHLTVKIGDEVVIRSYTPVSSDDDHGYVDLVIKVYFKNVHP 131

Query: 222 KFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMI 281
           KFP+GGKMSQ+LEN+K+GE ++  GP GRL Y G+G F ++ + +KDPPT   V ++ M+
Sbjct: 132 KFPEGGKMSQYLENLKIGETVDFRGPSGRLIYKGHGNFSVK-ILRKDPPTEYNVKKIVML 190

Query: 282 AGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           AGGTGITPMLQL+R I KD TD T+ SL+FANQ
Sbjct: 191 AGGTGITPMLQLIRAIIKDSTDETQTSLLFANQ 223

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312380898|gb|EFR26772.1| hypothetical protein AND_06926 [Anopheles darlingi]

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 128/252 (50%), Positives = 152/252 (60%), Gaps = 61/252 (24%)

Query: 72  KKDKASRS--------SKKELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLG 123
           KKDK+SR+        S KE +TL+DP  K  L L EK EI+HDTR FRF LPS +H+  
Sbjct: 33  KKDKSSRTARSGGTAASSKEPRTLLDPQEKYMLPLIEKEEISHDTRRFRFGLPSEKHI-- 90

Query: 124 KQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSL 183
                                                            LGLP+GQH+ L
Sbjct: 91  -------------------------------------------------LGLPVGQHIHL 101

Query: 184 SATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPIN 243
           SATINDE V RAYTPV+ D+ HGY+DLVVKVY KNVHPKFPDGGKMSQ LE++K+G+ I 
Sbjct: 102 SATINDELVIRAYTPVSCDDDHGYVDLVVKVYKKNVHPKFPDGGKMSQHLESLKLGDRIA 161

Query: 244 VSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITK-DPT 302
             GP GRL YLGNG F I+ + +KDP    +   +S+IAGGTGITPMLQLVR + K   T
Sbjct: 162 FRGPSGRLQYLGNGRFSIKKL-RKDPAQIYEAEHVSLIAGGTGITPMLQLVREVLKHSDT 220

Query: 303 DNTKMSLIFANQ 314
           DNTK+SLIFANQ
Sbjct: 221 DNTKLSLIFANQ 232

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|308055648|gb|ADO08221.1| NADPH cytochrome b5 reductase [Helicoverpa armigera]

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 118/232 (50%), Positives = 146/232 (62%), Gaps = 52/232 (22%)

Query: 83  ELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIA 142
           +L TLVDP+VK  L L E+ EI+HDTR FRF LPS+EHV                     
Sbjct: 53  QLITLVDPNVKYALPLIEREEISHDTRRFRFGLPSSEHV--------------------- 91

Query: 143 NILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSD 202
                                         LGLPIGQH+ LSA I+D+ V R+YTPV+SD
Sbjct: 92  ------------------------------LGLPIGQHIHLSAKIDDDLVIRSYTPVSSD 121

Query: 203 EHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIR 262
           E  GY++LV+KVYFKNVHPKFPDGGKMSQ L ++K+ + I+V GP GRL Y GNG F I+
Sbjct: 122 EEKGYVELVIKVYFKNVHPKFPDGGKMSQHLNSLKINDTIDVRGPSGRLQYAGNGLFLIK 181

Query: 263 AVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
            + +KDPP  L+  +L+MIAGGTGI PMLQL+RHI KD +D T+M L+FANQ
Sbjct: 182 KM-RKDPPVELRAKKLNMIAGGTGIAPMLQLIRHICKDASDPTEMRLLFANQ 232

Source: Helicoverpa armigera

Species: Helicoverpa armigera

Genus: Helicoverpa

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|325155524|gb|ADY89570.1| NADPH cytochrome b5 reductase 1 [Helicoverpa armigera]

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 118/232 (50%), Positives = 146/232 (62%), Gaps = 52/232 (22%)

Query: 83  ELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIA 142
           +L TLVDP+VK  L L E+ EI+HDTR FRF LPS+EHV                     
Sbjct: 43  QLITLVDPNVKYALPLIEREEISHDTRRFRFGLPSSEHV--------------------- 81

Query: 143 NILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSD 202
                                         LGLPIGQH+ LSA I+D+ V R+YTPV+SD
Sbjct: 82  ------------------------------LGLPIGQHIHLSAKIDDDLVIRSYTPVSSD 111

Query: 203 EHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIR 262
           E  GY++LV+KVYFKNVHPKFPDGGKMSQ L ++K+ + I+V GP GRL Y GNG F I+
Sbjct: 112 EEKGYVELVIKVYFKNVHPKFPDGGKMSQHLNSLKINDTIDVRGPSGRLQYAGNGLFLIK 171

Query: 263 AVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
            + +KDPP  L+  +L+MIAGGTGI PMLQL+RHI KD +D T+M L+FANQ
Sbjct: 172 KM-RKDPPVELRAKKLNMIAGGTGIAPMLQLIRHICKDASDPTEMRLLFANQ 222

Source: Helicoverpa armigera

Species: Helicoverpa armigera

Genus: Helicoverpa

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291384558|ref|XP_002708827.1| PREDICTED: cytochrome b5 reductase 2-like [Oryctolagus cuniculus]

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 123/269 (45%), Positives = 154/269 (57%), Gaps = 62/269 (23%)

Query: 46  PSILVGVGLIVVVGFIISAIQESKSKKKDKASRSSKKELKTLVDPDVKVPLKLKEKIEIN 105
           PS+L+ + +I V   +++           K   S KKEL TL DPD K PL L EK  IN
Sbjct: 12  PSLLLAITVIGVTVLLVAL----------KTMGSRKKELITLQDPDAKYPLPLIEKEHIN 61

Query: 106 HDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESE 165
           H+TR FRF LPS EH+                                            
Sbjct: 62  HNTRRFRFGLPSPEHI-------------------------------------------- 77

Query: 166 PPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPD 225
                  LGLP+G ++ L A I+DE V RAYTPV+SD+ HG++DL++K+YFKNVHP++P+
Sbjct: 78  -------LGLPVGNYVHLLAKIDDELVVRAYTPVSSDDDHGFVDLIIKIYFKNVHPRYPE 130

Query: 226 GGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGT 285
           GGKM+Q+LENMK+G+ I   GP GRL Y G G   I+     +P   L V  L MIAGGT
Sbjct: 131 GGKMTQYLENMKIGDTILFRGPNGRLFYNGPGNLGIKQYKTSEPEKKL-VHHLGMIAGGT 189

Query: 286 GITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           GITPMLQL+RHITK+P D TKMSLIFANQ
Sbjct: 190 GITPMLQLIRHITKNPKDRTKMSLIFANQ 218

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
UNIPROTKB|Q6BCY4	276	CYB5R2 "NADH-cytochrome b5 red	0.449	0.510	0.619	9.9e-56
ZFIN|ZDB-GENE-060825-83	309	cyb5r2 "cytochrome b5 reductas	0.449	0.456	0.612	1.1e-54
RGD|1308421	276	Cyb5r2 "cytochrome b5 reductas	0.449	0.510	0.598	1.8e-54
UNIPROTKB|Q6AY12	276	Cyb5r2 "NADH-cytochrome b5 red	0.449	0.510	0.598	1.8e-54
MGI|MGI:2444415	276	Cyb5r2 "cytochrome b5 reductas	0.449	0.510	0.605	2.3e-54
UNIPROTKB|F1P1W2	304	CYB5R2 "NADH-cytochrome b5 red	0.449	0.463	0.612	9.9e-54
UNIPROTKB|F1NZY9	301	CYB5R3 "Uncharacterized protei	0.449	0.468	0.605	9.9e-54
UNIPROTKB|Q5ZHX7	304	CYB5R2 "NADH-cytochrome b5 red	0.449	0.463	0.605	2.6e-53
UNIPROTKB|P83686	272	CYB5R3 "NADH-cytochrome b5 red	0.461	0.533	0.581	4.2e-53
WB|WBGene00020268	309	hpo-19 [Caenorhabditis elegans	0.449	0.456	0.584	4.2e-53

UNIPROTKB|Q6BCY4 CYB5R2 "NADH-cytochrome b5 reductase 2" [Homo sapiens (taxid:9606)]

 Score = 472 (171.2 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
 Identities = 88/142 (61%), Positives = 110/142 (77%)

Query:   173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQF 232
             LGLP+G ++ L A I++E V RAYTPV+SD+  G++DL++K+YFKNVHP++P+GGKM+Q+
Sbjct:    46 LGLPVGNYVQLLAKIDNELVVRAYTPVSSDDDRGFVDLIIKIYFKNVHPQYPEGGKMTQY 105

Query:   233 LENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQ 292
             LENMK+GE I   GPRGRL Y G G   IR     +P   L    L MIAGGTGITPMLQ
Sbjct:   106 LENMKIGETIFFRGPRGRLFYHGPGNLGIRPDQTSEPKKTL-ADHLGMIAGGTGITPMLQ 164

Query:   293 LVRHITKDPTDNTKMSLIFANQ 314
             L+RHITKDP+D T+MSLIFANQ
Sbjct:   165 LIRHITKDPSDRTRMSLIFANQ 186

GO:0016126 "sterol biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004128 "cytochrome-b5 reductase activity, acting on NAD(P)H" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0016020 "membrane" evidence=IDA

ZFIN|ZDB-GENE-060825-83 cyb5r2 "cytochrome b5 reductase 2" [Danio rerio (taxid:7955)]

 Score = 450 (163.5 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
 Identities = 87/142 (61%), Positives = 104/142 (73%)

Query:   173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQF 232
             LGLPIGQH+ LSA +N   V RAYTPV+SD+  GY+DLVVKVY+KN HP +PDGGKMSQ+
Sbjct:    79 LGLPIGQHIYLSAKVNGSLVVRAYTPVSSDQDQGYVDLVVKVYYKNTHPSYPDGGKMSQY 138

Query:   233 LENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQ 292
             L+NMK+G+ I+  GP G L Y G G+F IR   K +     K   ++MIAGGTGITPMLQ
Sbjct:   139 LDNMKIGDTIDFRGPNGLLVYNGKGKFAIRPDKKSEAEVR-KFKHVAMIAGGTGITPMLQ 197

Query:   293 LVRHITKDPTDNTKMSLIFANQ 314
             L+R IT D  D T  SLIFANQ
Sbjct:   198 LIRSITADSFDETVCSLIFANQ 219

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004128 "cytochrome-b5 reductase activity, acting on NAD(P)H" evidence=IEA

GO:0016126 "sterol biosynthetic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008202 "steroid metabolic process" evidence=IEA

RGD|1308421 Cyb5r2 "cytochrome b5 reductase 2" [Rattus norvegicus (taxid:10116)]

 Score = 451 (163.8 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
 Identities = 85/142 (59%), Positives = 108/142 (76%)

Query:   173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQF 232
             LGLP+G ++ L A IN+E V RAYTPV+SD+  G++DL++K+YFKNVHPK+P+GGKM+Q+
Sbjct:    46 LGLPVGNYVHLLAQINNELVIRAYTPVSSDDDQGFVDLIIKIYFKNVHPKYPEGGKMTQY 105

Query:   233 LENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQ 292
             LENMK+G+ I   GP GRL Y   G   I+     +P   L V  L MIAGGTGITPMLQ
Sbjct:   106 LENMKIGDTILFRGPTGRLFYNEPGTLLIKTDKTSEPEKKL-VHHLGMIAGGTGITPMLQ 164

Query:   293 LVRHITKDPTDNTKMSLIFANQ 314
             L+RHITKD +D T+MSL+FANQ
Sbjct:   165 LIRHITKDTSDGTRMSLLFANQ 186

GO:0004128 "cytochrome-b5 reductase activity, acting on NAD(P)H" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0016020 "membrane" evidence=IEA;ISO

GO:0016126 "sterol biosynthetic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|Q6AY12 Cyb5r2 "NADH-cytochrome b5 reductase 2" [Rattus norvegicus (taxid:10116)]

 Score = 451 (163.8 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
 Identities = 85/142 (59%), Positives = 108/142 (76%)

Query:   173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQF 232
             LGLP+G ++ L A IN+E V RAYTPV+SD+  G++DL++K+YFKNVHPK+P+GGKM+Q+
Sbjct:    46 LGLPVGNYVHLLAQINNELVIRAYTPVSSDDDQGFVDLIIKIYFKNVHPKYPEGGKMTQY 105

Query:   233 LENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQ 292
             LENMK+G+ I   GP GRL Y   G   I+     +P   L V  L MIAGGTGITPMLQ
Sbjct:   106 LENMKIGDTILFRGPTGRLFYNEPGTLLIKTDKTSEPEKKL-VHHLGMIAGGTGITPMLQ 164

Query:   293 LVRHITKDPTDNTKMSLIFANQ 314
             L+RHITKD +D T+MSL+FANQ
Sbjct:   165 LIRHITKDTSDGTRMSLLFANQ 186

GO:0005739 "mitochondrion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

MGI|MGI:2444415 Cyb5r2 "cytochrome b5 reductase 2" [Mus musculus (taxid:10090)]

 Score = 455 (165.2 bits), Expect = 2.3e-54, Sum P(2) = 2.3e-54
 Identities = 86/142 (60%), Positives = 109/142 (76%)

Query:   173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQF 232
             LGLP+G ++ L A IN+E V RAYTPV+SD+  G++DL++K+YFKNVHPK+P+GGKM+Q+
Sbjct:    46 LGLPVGNYVHLLAQINNELVIRAYTPVSSDDDQGFVDLIIKIYFKNVHPKYPEGGKMTQY 105

Query:   233 LENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQ 292
             LENMK+G+ I   GP GRL Y   G   I+A    +P   L V  L MIAGGTGITPMLQ
Sbjct:   106 LENMKIGDTILFRGPTGRLFYNEPGTLLIKANKTSEPEKKL-VHHLGMIAGGTGITPMLQ 164

Query:   293 LVRHITKDPTDNTKMSLIFANQ 314
             L+RHITKD +D T+MSL+FANQ
Sbjct:   165 LIRHITKDTSDETRMSLLFANQ 186

GO:0004128 "cytochrome-b5 reductase activity, acting on NAD(P)H" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0008202 "steroid metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016126 "sterol biosynthetic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA;ISO

UNIPROTKB|F1P1W2 CYB5R2 "NADH-cytochrome b5 reductase 2" [Gallus gallus (taxid:9031)]

 Score = 456 (165.6 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
 Identities = 87/142 (61%), Positives = 107/142 (75%)

Query:   173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQF 232
             LGLP+GQH+ LSA IN   V RAYTPV+SDE  GY+DL++KVY+KNV+PKFP+GGKMSQ+
Sbjct:    74 LGLPVGQHVYLSAKINGNLVIRAYTPVSSDETKGYVDLIIKVYYKNVNPKFPEGGKMSQY 133

Query:   233 LENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQ 292
             L++MK+G+ I+  GP G L Y G+G F I+   KK          L MIAGGTGITPMLQ
Sbjct:   134 LDSMKIGDVIDFRGPNGLLVYKGSGTFMIKP-DKKSEAQRKFAKHLGMIAGGTGITPMLQ 192

Query:   293 LVRHITKDPTDNTKMSLIFANQ 314
             L+RHIT DP D+TK  L+FANQ
Sbjct:   193 LIRHITSDPKDSTKCYLLFANQ 214

GO:0004128 "cytochrome-b5 reductase activity, acting on NAD(P)H" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1NZY9 CYB5R3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 448 (162.8 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
 Identities = 86/142 (60%), Positives = 104/142 (73%)

Query:   173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQF 232
             LGLPIGQH+ LSA I+   V R YTP++SD+  G++DLV+KVY K VHPKFPDGGKMSQ+
Sbjct:    71 LGLPIGQHIYLSARIDGALVVRPYTPISSDDDKGFVDLVIKVYMKGVHPKFPDGGKMSQY 130

Query:   233 LENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQ 292
             L+N+K+G+ I+  GP G L Y G GEF IR   K DP T  KV  + MIAGGTGITPMLQ
Sbjct:   131 LDNLKIGDTIDFRGPSGLLVYKGKGEFAIRPEKKADPVTK-KVKYVGMIAGGTGITPMLQ 189

Query:   293 LVRHITKDPTDNTKMSLIFANQ 314
             ++R I KD  D T   L+FANQ
Sbjct:   190 IIRAIMKDKDDGTVCQLLFANQ 211

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0071949 "FAD binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISS

GO:0004128 "cytochrome-b5 reductase activity, acting on NAD(P)H" evidence=ISS

UNIPROTKB|Q5ZHX7 CYB5R2 "NADH-cytochrome b5 reductase 2" [Gallus gallus (taxid:9031)]

 Score = 452 (164.2 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
 Identities = 86/142 (60%), Positives = 107/142 (75%)

Query:   173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQF 232
             LGLP+GQH+ LSA IN   V RAYTPV+SDE  GY+DL++KVY+KNV+PKFP+GGKMSQ+
Sbjct:    74 LGLPVGQHVYLSAKINGNLVIRAYTPVSSDETKGYVDLIIKVYYKNVNPKFPEGGKMSQY 133

Query:   233 LENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQ 292
             L++MK+G+ I+  GP G L Y G+G F I+   KK          L +IAGGTGITPMLQ
Sbjct:   134 LDSMKIGDVIDFRGPNGLLVYKGSGTFMIKP-DKKSEAQRKFAKHLGVIAGGTGITPMLQ 192

Query:   293 LVRHITKDPTDNTKMSLIFANQ 314
             L+RHIT DP D+TK  L+FANQ
Sbjct:   193 LIRHITSDPKDSTKCYLLFANQ 214

GO:0004128 "cytochrome-b5 reductase activity, acting on NAD(P)H" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016126 "sterol biosynthetic process" evidence=IEA

UNIPROTKB|P83686 CYB5R3 "NADH-cytochrome b5 reductase 3" [Sus scrofa (taxid:9823)]

 Score = 436 (158.5 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
 Identities = 86/148 (58%), Positives = 105/148 (70%)

Query:   167 PFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDG 226
             P H   LGLP+GQH+ LSA I+   V R YTPV+SD+  G++DLV+KVYFK+ HPKFP G
Sbjct:    38 PEHI--LGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAG 95

Query:   227 GKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTG 286
             GKMSQ+LE+MK+G+ I   GP G L Y G G+F IR   KK  P    V  + MIAGGTG
Sbjct:    96 GKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRP-DKKSSPVIKTVKSVGMIAGGTG 154

Query:   287 ITPMLQLVRHITKDPTDNTKMSLIFANQ 314
             ITPMLQ++R I KDP D+T   L+FANQ
Sbjct:   155 ITPMLQVIRAIMKDPDDHTVCHLLFANQ 182

GO:0005575 "cellular_component" evidence=ND

GO:0006695 "cholesterol biosynthetic process" evidence=NAS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0017144 "drug metabolic process" evidence=NAS

GO:0030497 "fatty acid elongation" evidence=NAS

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=NAS

GO:0055114 "oxidation-reduction process" evidence=NAS

GO:0004128 "cytochrome-b5 reductase activity, acting on NAD(P)H" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

WB|WBGene00020268 hpo-19 [Caenorhabditis elegans (taxid:6239)]

 Score = 435 (158.2 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
 Identities = 83/142 (58%), Positives = 108/142 (76%)

Query:   173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQF 232
             LGLPIGQH+ L+A I+ + + R YTPV+SDE  G++DL+VKVYFKN + KFP+GGKMSQ 
Sbjct:    79 LGLPIGQHVYLTANIDGKIIVRPYTPVSSDEDLGFVDLMVKVYFKNTNEKFPEGGKMSQH 138

Query:   233 LENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQ 292
             LE++K+G+ IN  GP+G + Y G+G F I+A  KK  P N     LSMIAGGTGITPMLQ
Sbjct:   139 LESLKIGDTINFRGPQGNIVYKGHGLFSIKA-DKKAEPKNRVFKHLSMIAGGTGITPMLQ 197

Query:   293 LVRHITKDPTDNTKMSLIFANQ 314
             ++  I +DPTD T++ L+FANQ
Sbjct:   198 VIAAILRDPTDTTQIRLLFANQ 219

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54NC1	NCB5R_DICDI	1, ., 6, ., 2, ., 2	0.3171	0.6019	0.6608	yes	N/A
Q0P487	NB5R2_DANRE	1, ., 6, ., 2, ., 2	0.4514	0.6719	0.6828	yes	N/A
Q5BJ68	NB5R2_XENTR	1, ., 6, ., 2, ., 2	0.4575	0.6496	0.6710	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.6.2	0.766
4th Layer	1.6.2.2	0.824

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	314
PLN02252	888	PLN02252, PLN02252, nitrate reductase [NADPH]	4e-64
PTZ00319	300	PTZ00319, PTZ00319, NADH-cytochrome B5 reductase;	2e-54
cd06183	234	cd06183, cyt_b5_reduct_like, Cytochrome b5 reducta	5e-54
pfam00970	99	pfam00970, FAD_binding_6, Oxidoreductase FAD-bindi	2e-27
cd00322	223	cd00322, FNR_like, Ferredoxin reductase (FNR), an	5e-17
cd06214	241	cd06214, PA_degradation_oxidoreductase_like, NAD(P	3e-13
PTZ00274	325	PTZ00274, PTZ00274, cytochrome b5 reductase; Provi	5e-13
COG1018	266	COG1018, Hmp, Flavodoxin reductases (ferredoxin-NA	5e-13
cd06183	234	cd06183, cyt_b5_reduct_like, Cytochrome b5 reducta	3e-12
cd06215	231	cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur bi	7e-12
pfam00970	99	pfam00970, FAD_binding_6, Oxidoreductase FAD-bindi	2e-11
cd06217	235	cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur bi	2e-11
PLN02252	888	PLN02252, PLN02252, nitrate reductase [NADPH]	3e-11
COG0543	252	COG0543, UbiB, 2-polyprenylphenol hydroxylase and	1e-10
cd06216	243	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur bi	5e-09
cd06191	231	cd06191, FNR_iron_sulfur_binding, Iron-sulfur bind	2e-08
pfam00175	106	pfam00175, NAD_binding_1, Oxidoreductase NAD-bindi	2e-07
PTZ00319	300	PTZ00319, PTZ00319, NADH-cytochrome B5 reductase;	6e-07
cd06218	246	cd06218, DHOD_e_trans, FAD/NAD binding domain in t	8e-07
cd06187	224	cd06187, O2ase_reductase_like, The oxygenase reduc	2e-06
cd06209	228	cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reduc	3e-06
cd06194	222	cd06194, FNR_N-term_Iron_sulfur_binding, Iron-sulf	6e-06
cd06190	232	cd06190, T4MO_e_transfer_like, Toluene-4-monoxygen	7e-06
cd06196	218	cd06196, FNR_like_1, Ferredoxin reductase-like pro	7e-06
cd06184	247	cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)	8e-06
cd06195	241	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase i	9e-06
cd06210	236	cd06210, MMO_FAD_NAD_binding, Methane monooxygenas	1e-05
cd06188	283	cd06188, NADH_quinone_reductase, Na+-translocating	1e-05
cd06212	232	cd06212, monooxygenase_like, The oxygenase reducta	2e-05
TIGR02160	352	TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenas	2e-05
cd06189	224	cd06189, flavin_oxioreductase, NAD(P)H dependent f	4e-05
PTZ00306	1167	PTZ00306, PTZ00306, NADH-dependent fumarate reduct	2e-04
TIGR01941	405	TIGR01941, nqrF, NADH:ubiquinone oxidoreductase, N	4e-04
PRK08221	263	PRK08221, PRK08221, anaerobic sulfite reductase su	7e-04
PRK13289	399	PRK13289, PRK13289, bifunctional nitric oxide diox	7e-04
cd06208	286	cd06208, CYPOR_like_FNR, These ferredoxin reductas	0.001
TIGR02911	261	TIGR02911, sulfite_red_B, sulfite reductase, subun	0.002
PRK07609	339	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucosee	0.002
PRK00054	250	PRK00054, PRK00054, dihydroorotate dehydrogenase e	0.004

>gnl|CDD|215141 PLN02252, PLN02252, nitrate reductase [NADPH]

 Score =  216 bits (553), Expect = 4e-64
 Identities = 91/227 (40%), Positives = 127/227 (55%), Gaps = 58/227 (25%)

Query: 87  LVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILT 146
            ++P  K+P +L EKI ++HD R FRF LPS +HVLG                       
Sbjct: 628 ALNPREKIPCRLVEKISLSHDVRLFRFALPSEDHVLG----------------------- 664

Query: 147 PFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHG 206
                                       LP+G+H+ L ATIN +   RAYTP +SD+  G
Sbjct: 665 ----------------------------LPVGKHVFLCATINGKLCMRAYTPTSSDDEVG 696

Query: 207 YMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSK 266
           + +LV+KVYFKNVHPKFP+GG MSQ+L+++ +G+ I+V GP G + Y G G F    V+ 
Sbjct: 697 HFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSF---LVNG 753

Query: 267 KDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFAN 313
           K         +L+M+AGGTGITPM Q+++ I +DP D T+MSL++AN
Sbjct: 754 KPKF----AKKLAMLAGGTGITPMYQVIQAILRDPEDKTEMSLVYAN 796

Length = 888

>gnl|CDD|173521 PTZ00319, PTZ00319, NADH-cytochrome B5 reductase; Provisional

 Score =  179 bits (455), Expect = 2e-54
 Identities = 83/231 (35%), Positives = 113/231 (48%), Gaps = 57/231 (24%)

Query: 88  VDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTP 147
           +DPD+    KL +K E+ HDT  FRF L S    LG                        
Sbjct: 28  LDPDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLG------------------------ 63

Query: 148 FQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATIND----EFVARAYTPVTSDE 203
                                      LPIGQH+            E V  +YTP++SD+
Sbjct: 64  ---------------------------LPIGQHIVFRCDCTTPGKPETVQHSYTPISSDD 96

Query: 204 HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRA 263
             GY+D ++KVYFK VHP FP+GG++SQ L +MK+G+ I + GP G+  YLGNG + +  
Sbjct: 97  EKGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDKIEMRGPVGKFEYLGNGTYTVHK 156

Query: 264 VSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
                    + V   +MIAGGTGITPMLQ++  I K+  D TK+ L++ANQ
Sbjct: 157 GKGG--LKTMHVDAFAMIAGGTGITPMLQIIHAIKKNKEDRTKVFLVYANQ 205

Length = 300

>gnl|CDD|99780 cd06183, cyt_b5_reduct_like, Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor

 Score =  175 bits (447), Expect = 5e-54
 Identities = 81/219 (36%), Positives = 106/219 (48%), Gaps = 76/219 (34%)

Query: 96  LKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWC 155
            KL  K +I+HDTR FRFELPS + VLG                                
Sbjct: 1   FKLVSKEDISHDTRIFRFELPSPDQVLG-------------------------------- 28

Query: 156 SRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVY 215
                              LP+GQH+ L A  + E V R YTP++ D+  GY DL++K+Y
Sbjct: 29  -------------------LPVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIY 69

Query: 216 FKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKV 275
                     GGKMSQ+L ++K G+ + + GP G+  Y  NG                KV
Sbjct: 70  P---------GGKMSQYLHSLKPGDTVEIRGPFGKFEYKPNG----------------KV 104

Query: 276 TQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
             + MIAGGTGITPMLQL+R I KDP D TK+SL++AN+
Sbjct: 105 KHIGMIAGGTGITPMLQLIRAILKDPEDKTKISLLYANR 143

Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH. Length = 234

>gnl|CDD|216220 pfam00970, FAD_binding_6, Oxidoreductase FAD-binding domain

 Score =  102 bits (257), Expect = 2e-27
 Identities = 50/159 (31%), Positives = 69/159 (43%), Gaps = 60/159 (37%)

Query: 95  PLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFW 154
           P KL EK  ++HD R FRF LPS + VLG                               
Sbjct: 1   PAKLVEKESLSHDVRRFRFALPSPDQVLG------------------------------- 29

Query: 155 CSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKV 214
                               LP GQH+ L   I+ + V RAY+P +S +  G ++L+VKV
Sbjct: 30  --------------------LPPGQHIFLRLPIDGKLVVRAYSPASSPDDVGELELLVKV 69

Query: 215 YFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAY 253
           Y          GGKMSQ+L+++K+G+ + V GP G   Y
Sbjct: 70  Y---------PGGKMSQYLDSLKIGDTVEVKGPLGHFEY 99

Length = 99

>gnl|CDD|99778 cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

 Score = 78.3 bits (193), Expect = 5e-17
 Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 32/153 (20%)

Query: 162 PESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHP 221
            +    F F       GQ++ L    +   + RAY+  +S +  G ++L VK+       
Sbjct: 15  LQLPNGFSF-----KPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTVKIV------ 63

Query: 222 KFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMI 281
               GG  S +L ++K G+ + VSGP G                  +    +      +I
Sbjct: 64  ---PGGPFSAWLHDLKPGDEVEVSGPGGD------------FFLPLEESGPVV-----LI 103

Query: 282 AGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           AGG GITP   ++RH+  D     +++L++  +
Sbjct: 104 AGGIGITPFRSMLRHLAADK-PGGEITLLYGAR 135

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H). Length = 223

>gnl|CDD|99810 cd06214, PA_degradation_oxidoreductase_like, NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 34/141 (24%)

Query: 178 GQHLSLSATINDEFVARAY---TPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL- 233
           GQ L+L   I+ E V R+Y   +    DE      L + V  K V      GG+ S +  
Sbjct: 36  GQFLTLRVPIDGEEVRRSYSICSSPGDDE------LRITV--KRV-----PGGRFSNWAN 82

Query: 234 ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQL 293
           + +K G+ + V  P GR        F          P         + A G+GITP+L +
Sbjct: 83  DELKAGDTLEVMPPAGR--------FT--------LPPLPGARHYVLFAAGSGITPVLSI 126

Query: 294 VRHITKDPTDNTKMSLIFANQ 314
           ++        +  ++L++ N+
Sbjct: 127 LKTALAREPASR-VTLVYGNR 146

PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 241

>gnl|CDD|140300 PTZ00274, PTZ00274, cytochrome b5 reductase; Provisional

 Score = 68.4 bits (167), Expect = 5e-13
 Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 31/126 (24%)

Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAY 253
           R YTPVT++   GY D++VK             G M+  L  M VG+ +       ++ Y
Sbjct: 104 RFYTPVTANHTKGYFDIIVKR---------KKDGLMTNHLFGMHVGDKLLFRSVTFKIQY 154

Query: 254 LGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP-----TDNTKMS 308
             N   H+                  MIAGGTG TPMLQ++RH   +P      D TK+S
Sbjct: 155 RPNRWKHV-----------------GMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLS 197

Query: 309 LIFANQ 314
            +F N+
Sbjct: 198 FLFCNR 203

Length = 325

>gnl|CDD|223949 COG1018, Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

 Score = 67.3 bits (165), Expect = 5e-13
 Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 34/137 (24%)

Query: 161 APESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTS-DEHHGYMDLVVKVYFKNV 219
            P       F       GQ++++      E + RAY+  ++ DE   Y  + VK      
Sbjct: 26  EPPDGLRLDFE-----PGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYR-ISVKR----- 74

Query: 220 HPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQL 278
                DGG  S +L +++KVG+ + VS P G                   P   L     
Sbjct: 75  ----EDGGGGSNWLHDHLKVGDTLEVSAPAGDFVL------------DDLPERKL----- 113

Query: 279 SMIAGGTGITPMLQLVR 295
            ++AGG GITP L ++R
Sbjct: 114 LLLAGGIGITPFLSMLR 130

Length = 266

>gnl|CDD|99780 cd06183, cyt_b5_reduct_like, Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor

 Score = 64.5 bits (158), Expect = 3e-12
 Identities = 22/44 (50%), Positives = 30/44 (68%)

Query: 3  LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVP 46
          LGLP+GQH+ L A  + E V R YTP++ D+  GY DL++K  P
Sbjct: 27 LGLPVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIYP 70

Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH. Length = 234

>gnl|CDD|99811 cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 63.8 bits (156), Expect = 7e-12
 Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 54/178 (30%)

Query: 151 VSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYT----PVTSDEHHG 206
            +F   R  +   S   +       P GQ L+L   I+ E V RAYT    P   D    
Sbjct: 14  KTF---RFAAPDGSLFAY------KP-GQFLTLELEIDGETVYRAYTLSSSPSRPD---- 59

Query: 207 YMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVS 265
            + + VK            GG +S +L +N+KVG+ +  SGP G        EF +    
Sbjct: 60  SLSITVKRV---------PGGLVSNWLHDNLKVGDELWASGPAG--------EFTL---- 98

Query: 266 KKDPPTNLKVTQLSMIAGGTGITPMLQLVRHI--TKDPTD-------NTKMSLIFANQ 314
             D P +    +L +++ G+GITPM+ + R +  T+   D        +   +IFA++
Sbjct: 99  -IDHPAD----KLLLLSAGSGITPMMSMARWLLDTRPDADIVFIHSARSPADIIFADE 151

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins which act as electron carriers in photosynthesis and ferredoxins which participate in redox chains from bacteria to mammals. Ferredoxin reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 231

>gnl|CDD|216220 pfam00970, FAD_binding_6, Oxidoreductase FAD-binding domain

 Score = 59.5 bits (145), Expect = 2e-11
 Identities = 20/45 (44%), Positives = 29/45 (64%)

Query: 2  WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVP 46
           LGLP GQH+ L   I+ + V RAY+P +S +  G ++L+VK  P
Sbjct: 27 VLGLPPGQHIFLRLPIDGKLVVRAYSPASSPDDVGELELLVKVYP 71

Length = 99

>gnl|CDD|99813 cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 35/155 (22%)

Query: 162 PESEPPFHFAWLGLPIGQHLSLSATINDEF-VARAYTPVTSDEHHGYMDLVVKVYFKNVH 220
           P+  PP   A      GQH+ L  T  D +   R+Y+  +S    G ++L VK       
Sbjct: 24  PDGVPPPFLA------GQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRV----- 72

Query: 221 PKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLS 279
                GG++S +L + +KVG+ + V GP         G F             L    + 
Sbjct: 73  ----PGGEVSPYLHDEVKVGDLLEVRGP--------IGTFTWN---------PLHGDPVV 111

Query: 280 MIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           ++AGG+GI P++ ++R+   D        L+++ +
Sbjct: 112 LLAGGSGIVPLMSMIRYRR-DLGWPVPFRLLYSAR 145

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 235

>gnl|CDD|215141 PLN02252, PLN02252, nitrate reductase [NADPH]

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 22/41 (53%), Positives = 31/41 (75%)

Query: 3   LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVK 43
           LGLP+G+H+ L ATIN +   RAYTP +SD+  G+ +LV+K
Sbjct: 663 LGLPVGKHVFLCATINGKLCMRAYTPTSSDDEVGHFELVIK 703

Length = 888

>gnl|CDD|223617 COG0543, UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 30/145 (20%)

Query: 170 FAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKM 229
           F  L    GQ + L          R Y+  ++ +  G ++L ++VY         + GK+
Sbjct: 31  FVALTFKPGQFVMLRVPGGVR---RPYSLASAPDDKGELELHIRVY---------EVGKV 78

Query: 230 SQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITP 289
           ++++  +K G+ I V GP      LGNG F    + K           + +IAGGTGI P
Sbjct: 79  TKYIFGLKEGDKIRVRGP------LGNG-FLREKIGKP----------VLLIAGGTGIAP 121

Query: 290 MLQLVRHITKDPTDNTKMSLIFANQ 314
           +  + + + +    N K++L++  +
Sbjct: 122 LYAIAKELKEKGDAN-KVTLLYGAR 145

Length = 252

>gnl|CDD|99812 cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 28/126 (22%)

Query: 172 WLGLPIGQHLSLSATINDEFVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMS 230
           W G   GQH+ L   I+     R+Y+  +S     G + L VK       P     G +S
Sbjct: 43  WPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKA-----QP----DGLVS 93

Query: 231 QFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITP 289
            +L  ++  G+ + +S P+G        +F +       PP  L      +IA G+GITP
Sbjct: 94  NWLVNHLAPGDVVELSQPQG--------DFVLPDPL---PPRLL------LIAAGSGITP 136

Query: 290 MLQLVR 295
           ++ ++R
Sbjct: 137 VMSMLR 142

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 243

>gnl|CDD|99788 cd06191, FNR_iron_sulfur_binding, Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 28/125 (22%)

Query: 172 WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQ 231
             G   GQH++L    + E + R Y+ + S      + + VK        + P GG++S 
Sbjct: 25  QYGFRPGQHVTLKLDFDGEELRRCYS-LCSSPAPDEISITVK--------RVP-GGRVSN 74

Query: 232 FL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPM 290
           +L E+++ G  + V GP+G   Y             + P   L      ++A G+GITP+
Sbjct: 75  YLREHIQPGMTVEVMGPQGHFVY-----------QPQPPGRYL------LVAAGSGITPL 117

Query: 291 LQLVR 295
           + ++R
Sbjct: 118 MAMIR 122

FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H). Length = 231

>gnl|CDD|215769 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding domain

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 14/35 (40%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 280 MIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           MIAGGTGI P+  +++ + +D  D T++ L++ N+
Sbjct: 1   MIAGGTGIAPLYSVLKALLED-EDGTEVYLVYGNR 34

Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity. Length = 106

>gnl|CDD|173521 PTZ00319, PTZ00319, NADH-cytochrome B5 reductase; Provisional

 Score = 49.8 bits (119), Expect = 6e-07
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 4/45 (8%)

Query: 3   LGLPIGQHLSLSATIND----EFVARAYTPVTSDEHHGYMDLVVK 43
           LGLPIGQH+            E V  +YTP++SD+  GY+D ++K
Sbjct: 62  LGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDEKGYVDFLIK 106

Length = 300

>gnl|CDD|99814 cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

 Score = 49.1 bits (118), Expect = 8e-07
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 28/102 (27%)

Query: 202 DEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHI 261
           D   G + L+ KV            GK ++ L  +K G+ ++V GP      LGNG F +
Sbjct: 53  DPEEGTITLLYKVV-----------GKGTRLLSELKAGDELDVLGP------LGNG-FDL 94

Query: 262 RAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTD 303
                K          + ++ GG GI P+L L + + +    
Sbjct: 95  PDDDGK----------VLLVGGGIGIAPLLFLAKQLAERGIK 126

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster. Length = 246

>gnl|CDD|99784 cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 33/136 (24%)

Query: 163 ESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPK 222
           + + P  F       GQ++++          RAY+P       G ++  V+         
Sbjct: 17  QLDQPLPF----WA-GQYVNV-TVPGRPRTWRAYSPANPPNEDGEIEFHVRAV------- 63

Query: 223 FPDGGKMSQFLEN-MKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMI 281
              GG++S  L + +KVG+ + +SGP G         F++R    +          +  I
Sbjct: 64  --PGGRVSNALHDELKVGDRVRLSGPYGT--------FYLRRDHDRP---------VLCI 104

Query: 282 AGGTGITPMLQLVRHI 297
           AGGTG+ P+  +V   
Sbjct: 105 AGGTGLAPLRAIVEDA 120

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. Length = 224

>gnl|CDD|99805 cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 20/88 (22%)

Query: 225 DGGKMSQFLENM-KVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAG 283
            GG MS +L +  + G+ + ++GP G         F++R V  K P        L M+AG
Sbjct: 69  PGGAMSSYLRDRAQPGDRLTLTGPLG--------SFYLREV--KRP--------LLMLAG 110

Query: 284 GTGITPMLQLVRHITKDPTDNTKMSLIF 311
           GTG+ P L ++  + +D + +  + L++
Sbjct: 111 GTGLAPFLSMLDVLAEDGSAH-PVHLVY 137

Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group. Length = 228

>gnl|CDD|99791 cd06194, FNR_N-term_Iron_sulfur_binding, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 29/141 (20%), Positives = 54/141 (38%), Gaps = 36/141 (25%)

Query: 157 RVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYF 216
           RV   P+   P+       P GQ+++L        +AR+Y+P +  +    ++  ++   
Sbjct: 13  RVRLEPDRPLPYL------P-GQYVNL---RRAGGLARSYSPTSLPDGDNELEFHIRRK- 61

Query: 217 KNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKV 275
                     G  S +L E  + G  + + GP G+  Y        R    + P      
Sbjct: 62  --------PNGAFSGWLGEEARPGHALRLQGPFGQAFY--------RPEYGEGP------ 99

Query: 276 TQLSMIAGGTGITPMLQLVRH 296
             L ++  GTG+ P+  + R 
Sbjct: 100 --LLLVGAGTGLAPLWGIARA 118

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 222

>gnl|CDD|99787 cd06190, T4MO_e_transfer_like, Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 27/121 (22%)

Query: 192 VARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGR 250
            ARAY+        G  + ++K            GG  S  L +N++ G+ + + GP G 
Sbjct: 39  GARAYSMANLANASGEWEFIIKRK---------PGGAASNALFDNLEPGDELELDGPYGL 89

Query: 251 LAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLI 310
            AYL       R    +D         +  IAGG+G+ PML ++R   + P  + +   +
Sbjct: 90  -AYL-------RPDEDRD---------IVCIAGGSGLAPMLSILRGAARSPYLSDRPVDL 132

Query: 311 F 311
           F
Sbjct: 133 F 133

Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family. Length = 232

>gnl|CDD|99793 cd06196, FNR_like_1, Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 35/123 (28%)

Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAY 253
           R +T  TS      ++ V+K Y        PD   +++ L  ++ G+ + +  P G + Y
Sbjct: 48  RPFTF-TSLPEDDVLEFVIKSY--------PDHDGVTEQLGRLQPGDTLLIEDPWGAIEY 98

Query: 254 LGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT--DNTKMSLIF 311
            G G F                     IAGG GITP + ++R +        NT   LIF
Sbjct: 99  KGPGVF---------------------IAGGAGITPFIAILRDLAAKGKLEGNT---LIF 134

Query: 312 ANQ 314
           AN+
Sbjct: 135 ANK 137

The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 218

>gnl|CDD|99781 cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)H binding domain of flavohemoglobin

 Score = 46.0 bits (110), Expect = 8e-06
 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 31/140 (22%)

Query: 178 GQHLSLSATINDE--FVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-E 234
           GQ+LS+   +        R Y+ ++   +  Y  + VK   +        GG +S +L +
Sbjct: 40  GQYLSVRVKLPGLGYRQIRQYS-LSDAPNGDYYRISVK---RE------PGGLVSNYLHD 89

Query: 235 NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLV 294
           N+KVG+ + VS P G        +F +   S +  P  L       I+ G GITPML ++
Sbjct: 90  NVKVGDVLEVSAPAG--------DFVLDEASDR--PLVL-------ISAGVGITPMLSML 132

Query: 295 RHITKDPTDNTKMSLIFANQ 314
             +  +      ++ I A +
Sbjct: 133 EALAAEGPG-RPVTFIHAAR 151

Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling. Length = 247

>gnl|CDD|99792 cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

 Score = 45.6 bits (109), Expect = 9e-06
 Identities = 35/158 (22%), Positives = 55/158 (34%), Gaps = 45/158 (28%)

Query: 152 SFWCSRVVSAPESEP--PFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMD 209
           SF  +R              F  LGLP           + + V RAY+   S  +   ++
Sbjct: 14  SFRVTR----DIPFRFQAGQFTKLGLPND---------DGKLVRRAYSIA-SAPYEENLE 59

Query: 210 -LVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVS-GPRGRLAYLGNGEFHIRAVSKK 267
             ++ V            G ++  L  +K G+ I V   P G L               +
Sbjct: 60  FYIILV----------PDGPLTPRLFKLKPGDTIYVGKKPTGFL------------TLDE 97

Query: 268 DPPTNLKVTQLSMIAGGTGITPMLQLVR-HITKDPTDN 304
            PP      +L ++A GTGI P L ++R     +  D 
Sbjct: 98  VPPGK----RLWLLATGTGIAPFLSMLRDLEIWERFDK 131

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 241

>gnl|CDD|99806 cd06210, MMO_FAD_NAD_binding, Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 30/135 (22%)

Query: 178 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-M 236
           GQ + +   I      R+Y+   +    G ++ ++++      P    GG  S +LE   
Sbjct: 38  GQFVEIE--IPGTDTRRSYSLANTPNWDGRLEFLIRL-----LP----GGAFSTYLETRA 86

Query: 237 KVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRH 296
           KVG+ +N+ GP G      NG    R                  +AGGTG+ P+L ++R 
Sbjct: 87  KVGQRLNLRGPLGAFGLRENG-LRPRW----------------FVAGGTGLAPLLSMLRR 129

Query: 297 ITKDPTDNTKMSLIF 311
           +  +  +  +  L F
Sbjct: 130 M-AEWGEPQEARLFF 143

This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water. Length = 236

>gnl|CDD|99785 cd06188, NADH_quinone_reductase, Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 22/126 (17%)

Query: 187 INDEFVARAYTPVTSDEHHGYMDLVVKVYF-KNVHPKFPDGGKMSQFLENMKVGEPINVS 245
            +DE V+RAY+        G + L V++      +   P G   S ++ N+K G+ +  S
Sbjct: 80  KHDEPVSRAYSLANYPAEEGELKLNVRIATPPPGNSDIPPG-IGSSYIFNLKPGDKVTAS 138

Query: 246 GPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNT 305
           GP     +   GEF I+   +          ++  I GG G+ P+   + H+ K  T  +
Sbjct: 139 GP-----F---GEFFIKDTDR----------EMVFIGGGAGMAPLRSHIFHLLK--TLKS 178

Query: 306 KMSLIF 311
           K  + F
Sbjct: 179 KRKISF 184

(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain. Length = 283

>gnl|CDD|99808 cd06212, monooxygenase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 34/142 (23%)

Query: 157 RVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYF 216
           R+    E   P  F       GQ++ +  T+      R+++   +    G ++ ++K Y 
Sbjct: 17  RLRLRLEEPEPIKF----FA-GQYVDI--TVPGTEETRSFSMANTPADPGRLEFIIKKY- 68

Query: 217 KNVHPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKV 275
                    GG  S FL++ + VG+P+ V+GP     Y   G   +R  S+  P      
Sbjct: 69  --------PGGLFSSFLDDGLAVGDPVTVTGP-----Y---GTCTLR-ESRDRP------ 105

Query: 276 TQLSMIAGGTGITPMLQLVRHI 297
             + +I GG+G+ P+L L+R +
Sbjct: 106 --IVLIGGGSGMAPLLSLLRDM 125

These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate. Length = 232

>gnl|CDD|131215 TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenase/reductase, PaaK subunit

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 27/138 (19%)

Query: 178 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENM 236
           GQHL+L   ++ E + R+Y+  +           ++V  K +      GG  S +  + +
Sbjct: 36  GQHLTLRREVDGEELRRSYSICS-----APAPGEIRVAVKKI-----PGGLFSTWANDEI 85

Query: 237 KVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRH 296
           + G+ + V  P+G         F          P          +A G+GITPML +   
Sbjct: 86  RPGDTLEVMAPQGL--------FT----PDLSTPHA---GHYVAVAAGSGITPMLSIAE- 129

Query: 297 ITKDPTDNTKMSLIFANQ 314
                   +  +L++ N+
Sbjct: 130 TVLAAEPRSTFTLVYGNR 147

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA [Energy metabolism, Other]. Length = 352

>gnl|CDD|99786 cd06189, flavin_oxioreductase, NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 18/81 (22%)

Query: 225 DGGKMSQ-FLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAG 283
            GG  S    E +K    + + GP         G+F +R  S +          L +IAG
Sbjct: 64  PGGSFSDYVFEELKENGLVRIEGP--------LGDFFLREDSDR---------PLILIAG 106

Query: 284 GTGITPMLQLVRHITKDPTDN 304
           GTG  P+  ++ H+    +  
Sbjct: 107 GTGFAPIKSILEHLLAQGSKR 127

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD. Length = 224

>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 19/141 (13%)

Query: 174  GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL 233
            GL +GQ +++    + + +   Y+P+T  +  G + ++ +           D G + +++
Sbjct: 947  GLTLGQFIAIRGDWDGQQLIGYYSPITLPDDLGVISILAR----------GDKGTLKEWI 996

Query: 234  ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQL 293
              ++ G+ + +    G            R   K+       + +L++IAGGTG+ PMLQ+
Sbjct: 997  SALRPGDSVEMKACGGLR-------IERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQI 1049

Query: 294  VRHITKDP-TDNTK-MSLIFA 312
            +R   K P  D+ + + LI+A
Sbjct: 1050 IRAALKKPYVDSIESIRLIYA 1070

Length = 1167

>gnl|CDD|130996 TIGR01941, nqrF, NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 26/126 (20%)

Query: 188 NDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDG----GKMSQFLENMKVGEPIN 243
            DE   RAY+        G + L V++      P F +     G MS ++ ++K G+ + 
Sbjct: 201 VDEETVRAYSMANYPAEKGIIKLNVRI----ATPPFINSDIPPGIMSSYIFSLKPGDKVT 256

Query: 244 VSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTD 303
           +SGP         GEF       KD        ++  I GG G+ PM   +    K    
Sbjct: 257 ISGPF--------GEFFA-----KDTD-----AEMVFIGGGAGMAPMRSHIFDQLKRLKS 298

Query: 304 NTKMSL 309
             K+S 
Sbjct: 299 KRKISF 304

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump [Transport and binding proteins, Cations and iron carrying compounds]. Length = 405

>gnl|CDD|181300 PRK08221, PRK08221, anaerobic sulfite reductase subunit B; Provisional

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 27/111 (24%)

Query: 201 SDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFH 260
           SD   GY+DL ++     V       GK++  + N+K G+ + + GP     Y GNG F 
Sbjct: 54  SDYGDGYIDLTIR----RV-------GKVTDEIFNLKEGDKLFLRGP-----Y-GNG-F- 94

Query: 261 IRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIF 311
                   P    K  +L ++AGGTG+ P+  L+R+  ++P +   + LI 
Sbjct: 95  --------PVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQEIKSLDLIL 137

Length = 263

>gnl|CDD|237337 PRK13289, PRK13289, bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 18/80 (22%)

Query: 225 DGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAG 283
            GGK+S +L +++ VG+ + ++ P G        +F +   S    P       + +I+G
Sbjct: 227 AGGKVSNYLHDHVNVGDVLELAAPAG--------DFFLDVASDT--P-------VVLISG 269

Query: 284 GTGITPMLQLVRHITKDPTD 303
           G GITPML ++  +      
Sbjct: 270 GVGITPMLSMLETLAAQQPK 289

Length = 399

>gnl|CDD|99804 cd06208, CYPOR_like_FNR, These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 20/86 (23%)

Query: 230 SQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITP 289
           S +L ++K G+ + ++GP G+   L             DP   L      MIA GTGI P
Sbjct: 106 SNYLCDLKPGDDVQITGPVGKTMLLPE-----------DPNATL-----IMIATGTGIAP 149

Query: 290 MLQLVRHI----TKDPTDNTKMSLIF 311
               +R +      D        L F
Sbjct: 150 FRSFLRRLFREKHADYKFTGLAWLFF 175

Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. CYPOR serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases, sulfite reducatase, and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal FNR-like FAD and NAD binding module, an FMN-binding domain, and an additional connecting domain (inserted within the FAD binding region) that orients the FNR and FMN -binding domains. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 286

>gnl|CDD|131957 TIGR02911, sulfite_red_B, sulfite reductase, subunit B

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 27/110 (24%)

Query: 201 SDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFH 260
           S    GY+DL ++     V       GK++  +  +K G+ + + GP       GNG   
Sbjct: 52  SGIGEGYIDLTIR----RV-------GKVTDEVFTLKEGDNLFLRGP------YGNGF-- 92

Query: 261 IRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLI 310
                      N K  +L ++AGGTG+ P+  +V +  K+P +   ++LI
Sbjct: 93  --------DVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLI 134

Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum [Central intermediary metabolism, Sulfur metabolism]. Length = 261

>gnl|CDD|181058 PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 18/73 (24%)

Query: 226 GGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGG 284
           GG  +  +   +K  + + + GP G         F +R  S K          + ++A G
Sbjct: 171 GGVFTDHVFGALKERDILRIEGPLG--------TFFLREDSDKP---------IVLLASG 213

Query: 285 TGITPMLQLVRHI 297
           TG  P+  +V H+
Sbjct: 214 TGFAPIKSIVEHL 226

Length = 339

>gnl|CDD|234601 PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 17/73 (23%)

Query: 227 GKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTG 286
           G+ ++ L  +K G+ +++ GP      LGNG F +  +  K          + ++ GG G
Sbjct: 71  GEGTKKLSKLKEGDELDIRGP------LGNG-FDLEEIGGK----------VLLVGGGIG 113

Query: 287 ITPMLQLVRHITK 299
           + P+ +L + + K
Sbjct: 114 VAPLYELAKELKK 126

Length = 250

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	314
KOG0534|consensus	286		100.0
PTZ00319	300	NADH-cytochrome B5 reductase; Provisional	99.97
PLN02252	888	nitrate reductase [NADPH]	99.97
PTZ00274	325	cytochrome b5 reductase; Provisional	99.94
COG1018	266	Hmp Flavodoxin reductases (ferredoxin-NADPH reduct	99.94
cd06188	283	NADH_quinone_reductase Na+-translocating NADH:quin	99.93
cd06183	234	cyt_b5_reduct_like Cytochrome b5 reductase catalyz	99.93
PRK10926	248	ferredoxin-NADP reductase; Provisional	99.93
cd06217	235	FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr	99.93
cd06184	247	flavohem_like_fad_nad_binding FAD_NAD(P)H binding	99.93
cd06211	238	phenol_2-monooxygenase_like Phenol 2-monooxygenase	99.93
cd06209	228	BenDO_FAD_NAD Benzoate dioxygenase reductase (BenD	99.93
cd06215	231	FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr	99.93
PRK08345	289	cytochrome-c3 hydrogenase subunit gamma; Provision	99.93
PRK10684	332	HCP oxidoreductase, NADH-dependent; Provisional	99.92
cd06191	231	FNR_iron_sulfur_binding Iron-sulfur binding Ferred	99.92
cd06210	236	MMO_FAD_NAD_binding Methane monooxygenase (MMO) re	99.92
PRK11872	340	antC anthranilate dioxygenase reductase; Provision	99.92
cd06216	243	FNR_iron_sulfur_binding_2 Iron-sulfur binding ferr	99.92
PRK13289	399	bifunctional nitric oxide dioxygenase/dihydropteri	99.92
cd06213	227	oxygenase_e_transfer_subunit The oxygenase reducta	99.92
cd06195	241	FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-c	99.92
TIGR02160	352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	99.92
PRK07609	339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	99.92
cd06212	232	monooxygenase_like The oxygenase reductase FAD/NAD	99.92
cd06189	224	flavin_oxioreductase NAD(P)H dependent flavin oxid	99.92
cd06196	218	FNR_like_1 Ferredoxin reductase-like proteins cata	99.92
cd06214	241	PA_degradation_oxidoreductase_like NAD(P) binding	99.92
cd00322	223	FNR_like Ferredoxin reductase (FNR), an FAD and NA	99.91
cd06190	232	T4MO_e_transfer_like Toluene-4-monoxygenase electr	99.91
PRK05802	320	hypothetical protein; Provisional	99.91
cd06187	224	O2ase_reductase_like The oxygenase reductase FAD/N	99.91
PRK05464	409	Na(+)-translocating NADH-quinone reductase subunit	99.91
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.91
PRK05713	312	hypothetical protein; Provisional	99.9
PRK08051	232	fre FMN reductase; Validated	99.9
cd06197	220	FNR_like_2 FAD/NAD(P) binding domain of ferredoxin	99.9
cd06192	243	DHOD_e_trans_like FAD/NAD binding domain (electron	99.9
TIGR01941	405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	99.9
cd06201	289	SiR_like2 Cytochrome p450- like alpha subunits of	99.9
COG0543	252	UbiB 2-polyprenylphenol hydroxylase and related fl	99.9
cd06194	222	FNR_N-term_Iron_sulfur_binding Iron-sulfur binding	99.9
cd06221	253	sulfite_reductase_like Anaerobic sulfite reductase	99.9
cd06208	286	CYPOR_like_FNR These ferredoxin reductases are rel	99.89
PLN03116	307	ferredoxin--NADP+ reductase; Provisional	99.89
PRK00054	250	dihydroorotate dehydrogenase electron transfer sub	99.89
PRK08221	263	anaerobic sulfite reductase subunit B; Provisional	99.89
cd06218	246	DHOD_e_trans FAD/NAD binding domain in the electro	99.89
TIGR03224	411	benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p	99.89
cd06193	235	siderophore_interacting Siderophore interacting pr	99.89
cd06185	211	PDR_like Phthalate dioxygenase reductase (PDR) is	99.89
cd06198	216	FNR_like_3 NAD(P) binding domain of ferredoxin red	99.88
PRK06222	281	ferredoxin-NADP(+) reductase subunit alpha; Review	99.88
cd06219	248	DHOD_e_trans_like1 FAD/NAD binding domain in the e	99.88
TIGR02911	261	sulfite_red_B sulfite reductase, subunit B. Member	99.88
PLN03115	367	ferredoxin--NADP(+) reductase; Provisional	99.87
cd06220	233	DHOD_e_trans_like2 FAD/NAD binding domain in the e	99.87
PF00970	99	FAD_binding_6: Oxidoreductase FAD-binding domain;	99.86
cd06182	267	CYPOR_like NADPH cytochrome p450 reductase (CYPOR)	99.86
cd06200	245	SiR_like1 Cytochrome p450- like alpha subunits of	99.85
cd06186	210	NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyz	99.83
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.81
PLN02292	702	ferric-chelate reductase	99.77
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.77
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.75
PLN02631	699	ferric-chelate reductase	99.72
COG4097	438	Predicted ferric reductase [Inorganic ion transpor	99.71
PLN02844	722	oxidoreductase/ferric-chelate reductase	99.65
cd06207	382	CyPoR_like NADPH cytochrome p450 reductase (CYPOR)	99.61
cd06199	360	SiR Cytochrome p450- like alpha subunits of E. col	99.6
TIGR01931	597	cysJ sulfite reductase [NADPH] flavoprotein, alpha	99.6
cd06206	384	bifunctional_CYPOR These bifunctional proteins fus	99.59
COG2871	410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	99.58
PRK10953	600	cysJ sulfite reductase subunit alpha; Provisional	99.51
cd06203	398	methionine_synthase_red Human methionine synthase	99.5
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.49
cd06202	406	Nitric_oxide_synthase The ferredoxin-reductase (FN	99.47
KOG3378|consensus	385		99.45
cd06204	416	CYPOR NADPH cytochrome p450 reductase (CYPOR) serv	99.44
PRK06214	530	sulfite reductase; Provisional	99.41
KOG0039|consensus	646		99.25
COG0369	587	CysJ Sulfite reductase, alpha subunit (flavoprotei	99.19
KOG0534|consensus	286		99.18
COG2375	265	ViuB Siderophore-interacting protein [Inorganic io	98.92
KOG1159|consensus	574		98.88
PF08021	117	FAD_binding_9: Siderophore-interacting FAD-binding	98.86
KOG1158|consensus	645		98.85
PF08022	105	FAD_binding_8: FAD-binding domain; InterPro: IPR01	98.5
PF00970	99	FAD_binding_6: Oxidoreductase FAD-binding domain;	98.44
PLN02252	888	nitrate reductase [NADPH]	97.82
cd06183	234	cyt_b5_reduct_like Cytochrome b5 reductase catalyz	97.0
PTZ00319	300	NADH-cytochrome B5 reductase; Provisional	96.98
PTZ00274	325	cytochrome b5 reductase; Provisional	96.9
cd06217	235	FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr	96.63
cd06195	241	FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-c	96.59
cd06215	231	FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr	96.57
cd00322	223	FNR_like Ferredoxin reductase (FNR), an FAD and NA	96.52
cd06216	243	FNR_iron_sulfur_binding_2 Iron-sulfur binding ferr	96.43
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	96.39
cd06214	241	PA_degradation_oxidoreductase_like NAD(P) binding	96.28
cd06191	231	FNR_iron_sulfur_binding Iron-sulfur binding Ferred	96.27
cd06212	232	monooxygenase_like The oxygenase reductase FAD/NAD	95.97
PRK10926	248	ferredoxin-NADP reductase; Provisional	95.89
PRK10684	332	HCP oxidoreductase, NADH-dependent; Provisional	95.88
cd06196	218	FNR_like_1 Ferredoxin reductase-like proteins cata	95.85
cd06209	228	BenDO_FAD_NAD Benzoate dioxygenase reductase (BenD	95.85
TIGR02160	352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	95.85
cd06213	227	oxygenase_e_transfer_subunit The oxygenase reducta	95.74
cd06210	236	MMO_FAD_NAD_binding Methane monooxygenase (MMO) re	95.7
cd06187	224	O2ase_reductase_like The oxygenase reductase FAD/N	95.65
cd06201	289	SiR_like2 Cytochrome p450- like alpha subunits of	95.58
PRK11872	340	antC anthranilate dioxygenase reductase; Provision	95.46
cd06184	247	flavohem_like_fad_nad_binding FAD_NAD(P)H binding	95.44
cd06211	238	phenol_2-monooxygenase_like Phenol 2-monooxygenase	95.37
cd06189	224	flavin_oxioreductase NAD(P)H dependent flavin oxid	95.22
cd06190	232	T4MO_e_transfer_like Toluene-4-monoxygenase electr	94.99
cd06198	216	FNR_like_3 NAD(P) binding domain of ferredoxin red	94.99
PRK13289	399	bifunctional nitric oxide dioxygenase/dihydropteri	94.9
cd06193	235	siderophore_interacting Siderophore interacting pr	94.66
cd06188	283	NADH_quinone_reductase Na+-translocating NADH:quin	94.6
cd06194	222	FNR_N-term_Iron_sulfur_binding Iron-sulfur binding	94.24
cd06192	243	DHOD_e_trans_like FAD/NAD binding domain (electron	94.08
cd06185	211	PDR_like Phthalate dioxygenase reductase (PDR) is	93.98
cd06197	220	FNR_like_2 FAD/NAD(P) binding domain of ferredoxin	93.67
PRK07609	339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	93.56
PRK05713	312	hypothetical protein; Provisional	93.1
cd06218	246	DHOD_e_trans FAD/NAD binding domain in the electro	91.39
COG1018	266	Hmp Flavodoxin reductases (ferredoxin-NADPH reduct	91.3
cd06182	267	CYPOR_like NADPH cytochrome p450 reductase (CYPOR)	90.71
COG0543	252	UbiB 2-polyprenylphenol hydroxylase and related fl	90.71
cd06186	210	NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyz	90.58
PRK05464	409	Na(+)-translocating NADH-quinone reductase subunit	89.5
PRK08051	232	fre FMN reductase; Validated	89.46
cd06221	253	sulfite_reductase_like Anaerobic sulfite reductase	88.25
cd06219	248	DHOD_e_trans_like1 FAD/NAD binding domain in the e	87.3
TIGR01941	405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	86.93
PRK08345	289	cytochrome-c3 hydrogenase subunit gamma; Provision	86.72
PRK05802	320	hypothetical protein; Provisional	84.14
PRK00054	250	dihydroorotate dehydrogenase electron transfer sub	83.75
PRK06222	281	ferredoxin-NADP(+) reductase subunit alpha; Review	82.88
PLN02292	702	ferric-chelate reductase	80.76

>KOG0534|consensus

Probab=100.00  E-value=3.7e-34  Score=270.38  Aligned_cols=156  Identities=57%  Similarity=0.953  Sum_probs=145.4

Q ss_pred             cccccccCCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccC
Q psy5567          82 KELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSA  161 (314)
Q Consensus        82 ~~~~~~l~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (314)
                      ...+++.|+..|+++++++++.+|||+..|+|.+|.+.+.+                                       
T Consensus        40 ~~~~~~~~~~~~~~~~l~~k~~~shdt~~f~f~lp~~~~~l---------------------------------------   80 (286)
T KOG0534|consen   40 TGKKTLVDPESYYPFRLIDKTELSHDTSLFRFVLPSADHVL---------------------------------------   80 (286)
T ss_pred             cCcccccCCcceEEEEEEEEEeccCCceeEEEecCCchhcc---------------------------------------
Confidence            56678899999999999999999999999999999887766                                       


Q ss_pred             CCCCCCcccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCe
Q psy5567         162 PESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEP  241 (314)
Q Consensus       162 ~~~~~~~~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~  241 (314)
                                  +++.|||+.+.++.++..+.|+|||++.+.+.|+++|+||.|         .+|+||+||++|++||+
T Consensus        81 ------------~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~~g~~~l~VK~Y---------~~G~mS~~l~~LkiGd~  139 (286)
T KOG0534|consen   81 ------------GLPIGQHVVLKAPIGGKLVVRPYTPVSLDDDKGYFDLVVKVY---------PKGKMSQHLDSLKIGDT  139 (286)
T ss_pred             ------------CcccceEEEEEecCCCcEEEEecCCccCccccceEEEEEEec---------cCCcccHHHhcCCCCCE
Confidence                        899999999999999999999999999998889999999999         78999999999999999


Q ss_pred             EEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         242 INVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       242 v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      |++|||.|++.|.++                 ..+++.|||||||||||+|++++++.++.|.++++|+|+|+
T Consensus       140 ve~rGP~G~~~~~~~-----------------~~~~l~miAgGtGItPmlqii~~il~~~~d~tki~lly~N~  195 (286)
T KOG0534|consen  140 VEFRGPIGEFKYDPQ-----------------KAKHLGMIAGGTGITPMLQLIRAILKDPEDTTKISLLYANK  195 (286)
T ss_pred             EEEecCccceEecCC-----------------CcceEEEEecccchhhHHHHHHHHhcCCCCCcEEEEEEecC
Confidence            999999997665532                 47999999999999999999999999999999999999996

>PTZ00319 NADH-cytochrome B5 reductase; Provisional

Probab=99.97  E-value=4.3e-30  Score=244.22  Aligned_cols=179  Identities=46%  Similarity=0.826  Sum_probs=148.9

Q ss_pred             ccccccCCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCC
Q psy5567          83 ELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAP  162 (314)
Q Consensus        83 ~~~~~l~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (314)
                      ++..-||++.+.+++|+++++++++++.|+|+++++....                                        
T Consensus        23 ~~~~~~~~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~----------------------------------------   62 (300)
T PTZ00319         23 SPPVALDPDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRL----------------------------------------   62 (300)
T ss_pred             CCccccCcCceEEEEEEEEEEcCCCceEEEEECCCCcccC----------------------------------------
Confidence            3456789999999999999999999999999987553222                                        


Q ss_pred             CCCCCcccccCCCCCCcEEEEEeeeCCc----eeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCC
Q psy5567         163 ESEPPFHFAWLGLPIGQHLSLSATINDE----FVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKV  238 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~GQ~v~l~~~~~~~----~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~  238 (314)
                                 .+.||||++++++.++.    ...|+|||++.+.+.+.++|+||++..+.|+.++++|.+|+||+++++
T Consensus        63 -----------~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~  131 (300)
T PTZ00319         63 -----------GLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDEKGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKL  131 (300)
T ss_pred             -----------CCccceEEEEEEEeCCCCccceEEeeeccCCCcccCCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCC
Confidence                       78999999999876433    578999999999888999999999866677888889999999999999


Q ss_pred             CCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         239 GEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       239 Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      ||.|.++||.|.|.|.++|.+.+...+.  .-.....++++|||||||||||++|+++++.+..+.++++|+|++|
T Consensus       132 Gd~v~i~gP~G~f~~~~~~~~~~~~~~~--~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~~~~~~i~liyg~r  205 (300)
T PTZ00319        132 GDKIEMRGPVGKFEYLGNGTYTVHKGKG--GLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNKEDRTKVFLVYANQ  205 (300)
T ss_pred             CCEEEEEccceeeEecCCcceeeccccc--cccccccceEEEEecCcccCHHHHHHHHHHhCCCCCceEEEEEecC
Confidence            9999999999999888887777654100  0001234689999999999999999999988755567899999986

>PLN02252 nitrate reductase [NADPH]

Probab=99.97  E-value=2.5e-30  Score=275.88  Aligned_cols=172  Identities=52%  Similarity=0.961  Sum_probs=156.3

Q ss_pred             ccccCCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCC
Q psy5567          85 KTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPES  164 (314)
Q Consensus        85 ~~~l~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                      ..+|+|..|.+++|++++.+|+|++.|+|++++....+                                          
T Consensus       626 ~~~l~p~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~l------------------------------------------  663 (888)
T PLN02252        626 PVALNPREKIPCRLVEKISLSHDVRLFRFALPSEDHVL------------------------------------------  663 (888)
T ss_pred             ccccccCceEEEEEEEEEEccCCeEEEEEEECCCcccC------------------------------------------
Confidence            56889999999999999999999999999998765333                                          


Q ss_pred             CCCcccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEE
Q psy5567         165 EPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINV  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v  244 (314)
                               ++++|||++|+++.+++.+.|+|||++.+.+.+.++|+||+|+++.|+++|++|.+|++|++|++||.|++
T Consensus       664 ---------gl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vGd~V~V  734 (888)
T PLN02252        664 ---------GLPVGKHVFLCATINGKLCMRAYTPTSSDDEVGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGDTIDV  734 (888)
T ss_pred             ---------CCCCCCEEEEEEecCCeEEEeeeEecccCCCCCEEEEEEEEEeccccCccCCCCchhhHHhcCCCCCEEEE
Confidence                     78999999999987777889999999999888999999999999999999999999999999999999999


Q ss_pred             EccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         245 SGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       245 ~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      +||+|.|.|.++|.|.++.       .....++++|||||||||||+|||++++.++.+.++++|+|+||
T Consensus       735 ~GP~G~f~y~g~G~f~l~~-------~~~~~~~vvmIAGGsGITPi~silr~ll~~~~d~t~i~Liyg~R  797 (888)
T PLN02252        735 KGPLGHIEYAGRGSFLVNG-------KPKFAKKLAMLAGGTGITPMYQVIQAILRDPEDKTEMSLVYANR  797 (888)
T ss_pred             ecCccceeecccceeeecc-------ccccCceEEEEecceehhHHHHHHHHHHhccCCCCcEEEEEEEC
Confidence            9999999999999999975       11246899999999999999999999998766678999999997

>PTZ00274 cytochrome b5 reductase; Provisional

Probab=99.94  E-value=3.1e-26  Score=220.66  Aligned_cols=149  Identities=38%  Similarity=0.581  Sum_probs=125.1

Q ss_pred             cCCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCC
Q psy5567          88 VDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPP  167 (314)
Q Consensus        88 l~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      +..+.|.+++|++++.+|+|++.|+|++|... ..                                             
T Consensus        47 ~~~~~~~~~~V~~i~~~t~dv~~f~f~lp~~~-~~---------------------------------------------   80 (325)
T PTZ00274         47 VFSQRYEPYQLGEVIPITHDTALFRFLLHSEE-EF---------------------------------------------   80 (325)
T ss_pred             cCCCceEEEEEEEEEEeCCCeEEEEEeCCccc-cc---------------------------------------------
Confidence            33678999999999999999999999987532 11                                             


Q ss_pred             cccccCCCCCCcEEEEEeee---CCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEE
Q psy5567         168 FHFAWLGLPIGQHLSLSATI---NDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINV  244 (314)
Q Consensus       168 ~~~~~~~~~~GQ~v~l~~~~---~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v  244 (314)
                            .+.||||+.+..+.   ++..+.|+|||+|.+.+.++++|+||++         ++|.+|+||+++++||+|++
T Consensus        81 ------~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~le~~IK~~---------~~G~~S~~L~~lk~Gd~v~v  145 (325)
T PTZ00274         81 ------NLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRK---------KDGLMTNHLFGMHVGDKLLF  145 (325)
T ss_pred             ------CCCCccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeEEEEEEEc---------CCCcccHHHhcCCCCCEEEE
Confidence                  78999999987652   2346789999999998889999999998         89999999999999999999


Q ss_pred             EccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCC-----CCCccEEEEEEeC
Q psy5567         245 SGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP-----TDNTKMSLIFANQ  314 (314)
Q Consensus       245 ~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~-----~~~~~v~Li~~~r  314 (314)
                      +||.|.+.+        ++         ...++++|||||||||||++|+++++.++     .+.++++|+|+||
T Consensus       146 ~GP~f~~~~--------~~---------~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R  203 (325)
T PTZ00274        146 RSVTFKIQY--------RP---------NRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNR  203 (325)
T ss_pred             eCCeeeccc--------CC---------CCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcC
Confidence            999874332        22         23479999999999999999999998763     2356999999997

>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

Probab=99.94  E-value=9.3e-26  Score=211.98  Aligned_cols=144  Identities=27%  Similarity=0.446  Sum_probs=128.4

Q ss_pred             CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567          91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF  170 (314)
Q Consensus        91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      ..+.+++|.+++.+++|++.|+|+.+++..                                                  
T Consensus         3 ~~~~~~~V~~v~~~t~di~sf~l~~~~g~~--------------------------------------------------   32 (266)
T COG1018           3 AGFRRVTVTSVEPETDDVFSFTLEPPDGLR--------------------------------------------------   32 (266)
T ss_pred             CceEEEEEEEEEEecCceEEEEEEcCCCCc--------------------------------------------------
Confidence            468999999999999999999999887641                                                  


Q ss_pred             ccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEcccc
Q psy5567         171 AWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRG  249 (314)
Q Consensus       171 ~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G  249 (314)
                        +.|.||||++|.++.++..+.|.||++|+|.+++.+.|.||+.         ++|.+|+||+ ++++||+|.+++|.|
T Consensus        33 --~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isVk~~---------~~G~~S~~Lh~~lk~Gd~l~v~~P~G  101 (266)
T COG1018          33 --LDFEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKRE---------DGGGGSNWLHDHLKVGDTLEVSAPAG  101 (266)
T ss_pred             --cccCCCCeEEEEecCCCceeeEEEEeccCCCCCceEEEEEEEe---------CCCcccHHHHhcCCCCCEEEEecCCC
Confidence              1579999999999988889999999999999888999999997         7799999997 999999999999999


Q ss_pred             CccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         250 RLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       250 ~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                              .|.++.         ....+++|||||+|||||++|++.+...+.  .+|.|+|++|
T Consensus       102 --------~F~l~~---------~~~~~~llla~G~GITP~lSml~~~~~~~~--~~v~l~h~~R  147 (266)
T COG1018         102 --------DFVLDD---------LPERKLLLLAGGIGITPFLSMLRTLLDRGP--ADVVLVHAAR  147 (266)
T ss_pred             --------CccCCC---------CCCCcEEEEeccccHhHHHHHHHHHHHhCC--CCEEEEEecC
Confidence                    566655         134489999999999999999999988763  6899999987

>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain

Probab=99.93  E-value=1.1e-25  Score=211.08  Aligned_cols=153  Identities=23%  Similarity=0.391  Sum_probs=123.5

Q ss_pred             CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567          91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF  170 (314)
Q Consensus        91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      ..+.+++|++++.+++|++.|+|++++... .                                                
T Consensus         7 ~~~~~~~v~~~~~~~~d~~~l~l~~~~~~~-~------------------------------------------------   37 (283)
T cd06188           7 AKKWECTVISNDNVATFIKELVLKLPSGEE-I------------------------------------------------   37 (283)
T ss_pred             cceEEEEEEEcccccchhhheEEecCCCce-e------------------------------------------------
Confidence            567789999999999999999999876421 1                                                


Q ss_pred             ccCCCCCCcEEEEEeeeC-----------------------------CceeeeeeeeecCCCCCceEEEEEEEEeecC-C
Q psy5567         171 AWLGLPIGQHLSLSATIN-----------------------------DEFVARAYTPVTSDEHHGYMDLVVKVYFKNV-H  220 (314)
Q Consensus       171 ~~~~~~~GQ~v~l~~~~~-----------------------------~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~-~  220 (314)
                         .++||||++|.++.+                             +....|+||+++.+.+.+.++|+||++..+. .
T Consensus        38 ---~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p~~~~~l~l~vk~~~~~~~~  114 (283)
T cd06188          38 ---AFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVSRAYSLANYPAEEGELKLNVRIATPPPGN  114 (283)
T ss_pred             ---eecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCccccccCcCCCCCCCCeEEEEEEEeccCCcc
Confidence               678999999998643                             2345699999999987799999999851100 0


Q ss_pred             CCCCCCChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhC
Q psy5567         221 PKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD  300 (314)
Q Consensus       221 ~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~  300 (314)
                      +++ ++|.+|+||+++++||.|.++||+|.        |.+..          ..++++|||||||||||++|+++++..
T Consensus       115 ~~~-~~G~~S~~L~~l~~Gd~v~i~gP~G~--------f~l~~----------~~~~~vlIAgGtGItP~~s~l~~~~~~  175 (283)
T cd06188         115 SDI-PPGIGSSYIFNLKPGDKVTASGPFGE--------FFIKD----------TDREMVFIGGGAGMAPLRSHIFHLLKT  175 (283)
T ss_pred             CCC-CCceehhHHhcCCCCCEEEEECcccc--------ccccC----------CCCcEEEEEecccHhHHHHHHHHHHhc
Confidence            012 47999999999999999999999994        55443          357899999999999999999998876


Q ss_pred             CCCCccEEEEEEeC
Q psy5567         301 PTDNTKMSLIFANQ  314 (314)
Q Consensus       301 ~~~~~~v~Li~~~r  314 (314)
                      +.+..+++|+|++|
T Consensus       176 ~~~~~~v~l~~g~r  189 (283)
T cd06188         176 LKSKRKISFWYGAR  189 (283)
T ss_pred             CCCCceEEEEEecC
Confidence            54357899999986

(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.

>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor

Probab=99.93  E-value=4.9e-25  Score=198.63  Aligned_cols=142  Identities=55%  Similarity=0.987  Sum_probs=121.6

Q ss_pred             EEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCC
Q psy5567          96 LKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGL  175 (314)
Q Consensus        96 ~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (314)
                      ++|++++.+++++..|+|+.++.....                                                   .+
T Consensus         1 ~~v~~~~~~~~~~~~~~l~~~~~~~~~---------------------------------------------------~~   29 (234)
T cd06183           1 FKLVSKEDISHDTRIFRFELPSPDQVL---------------------------------------------------GL   29 (234)
T ss_pred             CEeEEeEecCCCEEEEEEECCCCCCcC---------------------------------------------------CC
Confidence            478999999999999999987642222                                                   68


Q ss_pred             CCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCccccC
Q psy5567         176 PIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLG  255 (314)
Q Consensus       176 ~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~  255 (314)
                      .||||++|.++.++....|+|||++.+.+.+.++|+||.+         ++|.+|+||+++++||+|.++||+|.     
T Consensus        30 ~pGq~v~l~~~~~~~~~~R~ysi~s~~~~~~~~~~~v~~~---------~~G~~s~~l~~~~~G~~v~i~gP~G~-----   95 (234)
T cd06183          30 PVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIY---------PGGKMSQYLHSLKPGDTVEIRGPFGK-----   95 (234)
T ss_pred             CcccEEEEEecCCCcccccccccccCCCcCCEEEEEEEEC---------CCCcchhHHhcCCCCCEEEEECCccc-----
Confidence            9999999999876677889999999988778999999987         68999999999999999999999994     


Q ss_pred             CcceeecccCCCCCCCCCC-CCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         256 NGEFHIRAVSKKDPPTNLK-VTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       256 ~g~f~l~~~~~~~~~~~~~-~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                         |.+.+         .. .++++||||||||||+++++++++.+..+..+++|+|++|
T Consensus        96 ---~~~~~---------~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~~i~l~~~~r  143 (234)
T cd06183          96 ---FEYKP---------NGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISLLYANR  143 (234)
T ss_pred             ---eeecC---------CCCccEEEEEcCCcchhHHHHHHHHHHhCcCcCcEEEEEEecC
Confidence               55544         12 3789999999999999999999987643357899999986

Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.

>PRK10926 ferredoxin-NADP reductase; Provisional

Probab=99.93  E-value=9.3e-25  Score=201.76  Aligned_cols=142  Identities=23%  Similarity=0.273  Sum_probs=120.2

Q ss_pred             ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccc
Q psy5567          92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFA  171 (314)
Q Consensus        92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (314)
                      .|.+++|+++++++++++.|+|+.+.    .                                                 
T Consensus         3 ~~~~~~V~~i~~~t~~v~~l~l~~~~----~-------------------------------------------------   29 (248)
T PRK10926          3 DWVTGKVTKVQNWTDALFSLTVHAPV----D-------------------------------------------------   29 (248)
T ss_pred             ccEEEEEEEEEEcCCCeEEEEEeCCC----C-------------------------------------------------
Confidence            68999999999999999999998642    1                                                 


Q ss_pred             cCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCc
Q psy5567         172 WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRL  251 (314)
Q Consensus       172 ~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~  251 (314)
                        .+.||||++|.++.++....|+||+++.+.+ +.++|+||++         ++|.+|+||+++++||+|.++||.+. 
T Consensus        30 --~~~pGQfv~l~~~~~g~~~~R~ySias~p~~-~~l~~~ik~~---------~~G~~S~~L~~l~~Gd~v~i~gp~~g-   96 (248)
T PRK10926         30 --PFTAGQFTKLGLEIDGERVQRAYSYVNAPDN-PDLEFYLVTV---------PEGKLSPRLAALKPGDEVQVVSEAAG-   96 (248)
T ss_pred             --CCCCCCEEEEEEecCCcEEEeeecccCCCCC-CeEEEEEEEe---------CCCCcChHHHhCCCCCEEEEecCCCc-
Confidence              5789999999987667777899999998864 5899999998         78999999999999999999998742 


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         252 AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       252 ~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                            .|.++..        ...++++|||||||||||++|++++...+. ..+++|+|++|
T Consensus        97 ------~f~l~~~--------~~~~~~vlIagGtGItP~~s~l~~~~~~~~-~~~v~l~~g~r  144 (248)
T PRK10926         97 ------FFVLDEV--------PDCETLWMLATGTAIGPYLSILQEGKDLER-FKNLVLVHAAR  144 (248)
T ss_pred             ------ceEccCC--------CCCCeEEEEEeeeeHHHHHHHHHhhHhhCC-CCcEEEEEeCC
Confidence                  4555430        124789999999999999999999875443 56899999987

>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=99.93  E-value=8.4e-25  Score=197.78  Aligned_cols=143  Identities=27%  Similarity=0.489  Sum_probs=122.1

Q ss_pred             eEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccccc
Q psy5567          93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAW  172 (314)
Q Consensus        93 ~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (314)
                      |.+++|++++.++++++.|+|+.++.. ..                                                  
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~l~~~~~~-~~--------------------------------------------------   29 (235)
T cd06217           1 WRVLRVTEIIQETPTVKTFRLAVPDGV-PP--------------------------------------------------   29 (235)
T ss_pred             CceEEEEEEEecCCCeEEEEEECCCCC-cC--------------------------------------------------
Confidence            678999999999999999999988653 22                                                  


Q ss_pred             CCCCCCcEEEEEeee-CCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccccC
Q psy5567         173 LGLPIGQHLSLSATI-NDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGR  250 (314)
Q Consensus       173 ~~~~~GQ~v~l~~~~-~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~  250 (314)
                       .++||||++|.++. ++....|+||+++.+.+.+.++|+||.+         ++|.+|+||+ .+++||.|.++||+|.
T Consensus        30 -~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~---------~~G~~s~~l~~~l~~Gd~v~i~gP~G~   99 (235)
T cd06217          30 -PFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRV---------PGGEVSPYLHDEVKVGDLLEVRGPIGT   99 (235)
T ss_pred             -CcCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEc---------CCCcchHHHHhcCCCCCEEEEeCCcee
Confidence             67999999999873 4455679999999988878999999987         7799999996 4899999999999994


Q ss_pred             ccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         251 LAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       251 ~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                              |.+.+         ...++++||||||||||+++++++++.++. ..+++|+|++|
T Consensus       100 --------~~~~~---------~~~~~~vliagG~Giap~~~~~~~~~~~~~-~~~i~l~~~~r  145 (235)
T cd06217         100 --------FTWNP---------LHGDPVVLLAGGSGIVPLMSMIRYRRDLGW-PVPFRLLYSAR  145 (235)
T ss_pred             --------eEeCC---------CCCceEEEEecCcCccHHHHHHHHHHhcCC-CceEEEEEecC
Confidence                    55543         135789999999999999999999987753 57899999986

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form

>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin

Probab=99.93  E-value=1.7e-24  Score=197.94  Aligned_cols=145  Identities=26%  Similarity=0.413  Sum_probs=123.0

Q ss_pred             CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567          91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF  170 (314)
Q Consensus        91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      +.|+.++|+++++++++++.|+|+.++.....                                                
T Consensus         4 ~~~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~------------------------------------------------   35 (247)
T cd06184           4 RGFRPFVVARKVAESEDITSFYLEPADGGPLP------------------------------------------------   35 (247)
T ss_pred             CCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCC------------------------------------------------
Confidence            56899999999999999999999987543212                                                


Q ss_pred             ccCCCCCCcEEEEEeeeCC--ceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEcc
Q psy5567         171 AWLGLPIGQHLSLSATIND--EFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGP  247 (314)
Q Consensus       171 ~~~~~~~GQ~v~l~~~~~~--~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP  247 (314)
                         .+.||||+.|.++.++  ....|+|||++.+.+ +.++|.||.+         ++|.+|+||++ +++||+|.++||
T Consensus        36 ---~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~-~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd~v~i~gP  102 (247)
T cd06184          36 ---PFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG-DYYRISVKRE---------PGGLVSNYLHDNVKVGDVLEVSAP  102 (247)
T ss_pred             ---CCCCCCEEEEEEecCCCCCceeEEeEeccCCCC-CeEEEEEEEc---------CCCcchHHHHhcCCCCCEEEEEcC
Confidence               6899999999987654  467899999998865 4899999987         78999999977 999999999999


Q ss_pred             ccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         248 RGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       248 ~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      +|.        |.++.         ...++++|||||||||||+++++++..+.. ..+++|+|++|
T Consensus       103 ~G~--------~~~~~---------~~~~~llliagGtGiaP~~~~l~~~~~~~~-~~~i~l~~~~r  151 (247)
T cd06184         103 AGD--------FVLDE---------ASDRPLVLISAGVGITPMLSMLEALAAEGP-GRPVTFIHAAR  151 (247)
T ss_pred             CCc--------eECCC---------CCCCcEEEEeccccHhHHHHHHHHHHhcCC-CCcEEEEEEcC
Confidence            994        65543         135789999999999999999999987632 57899999986

Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.

>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol

Probab=99.93  E-value=1.4e-24  Score=198.00  Aligned_cols=144  Identities=22%  Similarity=0.416  Sum_probs=122.5

Q ss_pred             CCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcc
Q psy5567          90 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFH  169 (314)
Q Consensus        90 p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      |.+...++|++++.++++++.|+|++++... .                                               
T Consensus         3 ~~~~~~~~v~~~~~~t~~~~~~~l~~~~~~~-~-----------------------------------------------   34 (238)
T cd06211           3 NVKDFEGTVVEIEDLTPTIKGVRLKLDEPEE-I-----------------------------------------------   34 (238)
T ss_pred             CceEEeEEEEEEEecCCCEEEEEEEcCCCCc-C-----------------------------------------------
Confidence            4567789999999999999999999876431 1                                               


Q ss_pred             cccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccc
Q psy5567         170 FAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPR  248 (314)
Q Consensus       170 ~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~  248 (314)
                          .+.||||+.|+++  +....|+||+++.+.+.+.++|+||++         ++|.+|++|+ .+++||+|.++||.
T Consensus        35 ----~~~pGQ~v~l~~~--~~~~~r~ySi~s~~~~~~~l~l~i~~~---------~~G~~s~~l~~~l~~G~~v~i~gP~   99 (238)
T cd06211          35 ----EFQAGQYVNLQAP--GYEGTRAFSIASSPSDAGEIELHIRLV---------PGGIATTYVHKQLKEGDELEISGPY   99 (238)
T ss_pred             ----ccCCCCeEEEEcC--CCCCccccccCCCCCCCCEEEEEEEEC---------CCCcchhhHhhcCCCCCEEEEECCc
Confidence                6799999999985  334679999999988779999999987         7899999995 79999999999999


Q ss_pred             cCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       249 G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      |.        |.+.+         ...++++||||||||||+++++++++.++. ..+++|+|++|
T Consensus       100 G~--------~~~~~---------~~~~~~v~iagG~GiaP~~~~l~~~~~~~~-~~~v~l~~~~r  147 (238)
T cd06211         100 GD--------FFVRD---------SDQRPIIFIAGGSGLSSPRSMILDLLERGD-TRKITLFFGAR  147 (238)
T ss_pred             cc--------eEecC---------CCCCCEEEEeCCcCHHHHHHHHHHHHhcCC-CCcEEEEEecC
Confidence            94        55543         134789999999999999999999987754 46899999986

This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.

>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain

Probab=99.93  E-value=1.5e-24  Score=196.18  Aligned_cols=138  Identities=24%  Similarity=0.467  Sum_probs=118.4

Q ss_pred             EEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccC
Q psy5567          94 VPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWL  173 (314)
Q Consensus        94 ~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (314)
                      .+++|++++.++++++.|+|++++... .                                                   
T Consensus         2 ~~~~V~~~~~~t~~~~~l~l~~~~~~~-~---------------------------------------------------   29 (228)
T cd06209           2 FEATVTEVERLSDSTIGLTLELDEAGA-L---------------------------------------------------   29 (228)
T ss_pred             eeEEEEEEEEcCCCeEEEEEEcCCCCc-C---------------------------------------------------
Confidence            368999999999999999999876421 1                                                   


Q ss_pred             CCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEccccCcc
Q psy5567         174 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRLA  252 (314)
Q Consensus       174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~  252 (314)
                      .+.||||++|+++  +....|+||+++.+.+ +.++|+||.+         ++|.+|+||++ +++||.|.++||+|.  
T Consensus        30 ~~~pGQ~v~l~~~--~~~~~r~ysi~s~~~~-~~i~~~i~~~---------~~G~~s~~l~~~l~~G~~v~v~gP~G~--   95 (228)
T cd06209          30 AFLPGQYVNLQVP--GTDETRSYSFSSAPGD-PRLEFLIRLL---------PGGAMSSYLRDRAQPGDRLTLTGPLGS--   95 (228)
T ss_pred             ccCCCCEEEEEeC--CCCcccccccccCCCC-CeEEEEEEEc---------CCCcchhhHHhccCCCCEEEEECCccc--
Confidence            6899999999985  4446899999998876 8999999998         78999999977 999999999999994  


Q ss_pred             ccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         253 YLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       253 y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                            |.+.+          ..++++||||||||||++++++++...+ +..+++|+|++|
T Consensus        96 ------~~~~~----------~~~~~vlia~GtGIaP~~~ll~~~~~~~-~~~~v~l~~~~r  140 (228)
T cd06209          96 ------FYLRE----------VKRPLLMLAGGTGLAPFLSMLDVLAEDG-SAHPVHLVYGVT  140 (228)
T ss_pred             ------ceecC----------CCCeEEEEEcccCHhHHHHHHHHHHhcC-CCCcEEEEEecC
Confidence                  54433          2478999999999999999999998765 357899999986

Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.

>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=99.93  E-value=1.5e-24  Score=195.65  Aligned_cols=140  Identities=31%  Similarity=0.555  Sum_probs=120.9

Q ss_pred             EEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCC
Q psy5567          96 LKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGL  175 (314)
Q Consensus        96 ~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (314)
                      ++|+++++++++++.|+|+.+... ..                                                   .+
T Consensus         1 ~~v~~~~~~t~~~~~~~l~~~~~~-~~---------------------------------------------------~~   28 (231)
T cd06215           1 LRCVKIIQETPDVKTFRFAAPDGS-LF---------------------------------------------------AY   28 (231)
T ss_pred             CeEEEEEEcCCCeEEEEEECCCCC-cC---------------------------------------------------Cc
Confidence            479999999999999999988653 12                                                   67


Q ss_pred             CCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccccCcccc
Q psy5567         176 PIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYL  254 (314)
Q Consensus       176 ~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~y~  254 (314)
                      .||||+.|+++.++....|+||+++.+.+.+.++|.||++         ++|.+|+||+ ++++||.+.++||+|     
T Consensus        29 ~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~---------~~G~~s~~l~~~~~~G~~v~i~gP~G-----   94 (231)
T cd06215          29 KPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRV---------PGGLVSNWLHDNLKVGDELWASGPAG-----   94 (231)
T ss_pred             CCCCeEEEEEecCCCeEEEeeecccCCCCCCcEEEEEEEc---------CCCcchHHHHhcCCCCCEEEEEcCcc-----
Confidence            9999999999766777789999999988878899999988         7899999995 799999999999999     


Q ss_pred             CCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         255 GNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       255 ~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                         .|.+..         ...++++||||||||||+++|++++.+.+. ..+++|+|++|
T Consensus        95 ---~f~~~~---------~~~~~~vlIagG~Giap~~~~l~~~~~~~~-~~~v~l~~~~r  141 (231)
T cd06215          95 ---EFTLID---------HPADKLLLLSAGSGITPMMSMARWLLDTRP-DADIVFIHSAR  141 (231)
T ss_pred             ---eeEeCC---------CCCCcEEEEecCcCcchHHHHHHHHHhcCC-CCcEEEEEecC
Confidence               465543         135799999999999999999999987653 57899999986

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr

>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional

Probab=99.93  E-value=1.1e-24  Score=205.84  Aligned_cols=147  Identities=18%  Similarity=0.382  Sum_probs=120.6

Q ss_pred             CCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCc
Q psy5567          89 DPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPF  168 (314)
Q Consensus        89 ~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (314)
                      ||+.+++++|++++++|+|+..|+|++..+....                                            . 
T Consensus         1 ~~~~~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~--------------------------------------------~-   35 (289)
T PRK08345          1 NPYALHDAKILEVYDLTEREKLFLLRFEDPELAE--------------------------------------------S-   35 (289)
T ss_pred             CCcCceeEEEEEEEecCCCCCEEEEEEeCccccC--------------------------------------------C-
Confidence            6888999999999999999888888875432100                                            0 


Q ss_pred             ccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccc
Q psy5567         169 HFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPR  248 (314)
Q Consensus       169 ~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~  248 (314)
                          ..++||||+.|+++..+   .|+||+++.+.+.+.++|+||..           |.+|++|+++++||+|.++||+
T Consensus        36 ----~~~~pGQ~v~l~~~~~~---~~pySias~p~~~~~l~l~Ik~~-----------G~~S~~L~~l~~Gd~v~v~gP~   97 (289)
T PRK08345         36 ----FTFKPGQFVQVTIPGVG---EVPISICSSPTRKGFFELCIRRA-----------GRVTTVIHRLKEGDIVGVRGPY   97 (289)
T ss_pred             ----CCcCCCCEEEEEcCCCC---ceeeEecCCCCCCCEEEEEEEeC-----------ChHHHHHHhCCCCCEEEEeCCC
Confidence                16899999999986432   38999999988779999999963           9999999999999999999999


Q ss_pred             cCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       249 G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      |.       .|.++.         ...++++|||||||||||++|+++++++..+.++++|+|++|
T Consensus        98 G~-------~f~~~~---------~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~~~~v~l~~~~r  147 (289)
T PRK08345         98 GN-------GFPVDE---------MEGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYGNITLIYGAK  147 (289)
T ss_pred             CC-------CCCccc---------ccCceEEEEecccchhHHHHHHHHHHhcCCCCCcEEEEEecC
Confidence            95       244432         134689999999999999999999887653357999999987

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional

Probab=99.92  E-value=1.2e-24  Score=208.61  Aligned_cols=143  Identities=21%  Similarity=0.323  Sum_probs=120.6

Q ss_pred             CCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcc
Q psy5567          90 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFH  169 (314)
Q Consensus        90 p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      +.....++|+++++++++++.|+|+.++.   .                                               
T Consensus         6 ~~~~~~~~V~~i~~~t~~v~~l~l~~~~~---~-----------------------------------------------   35 (332)
T PRK10684          6 PQCPNRMQVHSIVQETPDVWTISLICHDF---Y-----------------------------------------------   35 (332)
T ss_pred             CCCceeEEEEEEEccCCCeEEEEEcCCCC---C-----------------------------------------------
Confidence            34456899999999999999999985432   1                                               


Q ss_pred             cccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccc
Q psy5567         170 FAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPR  248 (314)
Q Consensus       170 ~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~  248 (314)
                          .|.||||++|+++. +....|+||+++.+.+.+.++|+||++         ++|.+|+||+ ++++||+|.++||.
T Consensus        36 ----~f~pGQfv~l~~~~-~~~~~R~ySias~p~~~~~l~i~Vk~~---------~~G~~S~~L~~~l~~Gd~v~v~gP~  101 (332)
T PRK10684         36 ----PYRAGQYALVSIRN-SAETLRAYTLSSTPGVSEFITLTVRRI---------DDGVGSQWLTRDVKRGDYLWLSDAM  101 (332)
T ss_pred             ----CcCCCCEEEEEecC-CCEeeeeecccCCCCCCCcEEEEEEEc---------CCCcchhHHHhcCCCCCEEEEeCCc
Confidence                67999999999863 345679999999998778999999998         7899999995 89999999999999


Q ss_pred             cCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       249 G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      |+        |.++.         ...++++|||||||||||++|+++++.+.. ..+++|+|++|
T Consensus       102 G~--------f~l~~---------~~~~~~vliAgG~GItP~~sml~~~~~~~~-~~~v~l~y~~r  149 (332)
T PRK10684        102 GE--------FTCDD---------KAEDKYLLLAAGCGVTPIMSMRRWLLKNRP-QADVQVIFNVR  149 (332)
T ss_pred             cc--------cccCC---------CCCCcEEEEecCcCcchHHHHHHHHHhcCC-CCCEEEEEeCC
Confidence            95        55543         135789999999999999999999887643 47899999987

>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain

Probab=99.92  E-value=2.1e-24  Score=195.57  Aligned_cols=139  Identities=25%  Similarity=0.502  Sum_probs=119.1

Q ss_pred             EEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCC
Q psy5567          96 LKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGL  175 (314)
Q Consensus        96 ~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (314)
                      ++|+++++++++++.|+|++++...                                                    ..+
T Consensus         1 l~v~~i~~~t~~~~~~~l~~~~~~~----------------------------------------------------~~~   28 (231)
T cd06191           1 LRVAEVRSETPDAVTIVFAVPGPLQ----------------------------------------------------YGF   28 (231)
T ss_pred             CEEEEEEecCCCcEEEEEeCCCCCC----------------------------------------------------CCC
Confidence            4789999999999999999765421                                                    167


Q ss_pred             CCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccccCcccc
Q psy5567         176 PIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYL  254 (314)
Q Consensus       176 ~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~y~  254 (314)
                      .||||++|.++.++....|+||+++.+. .++++|.||.+         ++|.+|+||+ ++++||.|.++||+|     
T Consensus        29 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-~~~l~~~v~~~---------~~G~~s~~l~~~~~~Gd~v~i~gP~G-----   93 (231)
T cd06191          29 RPGQHVTLKLDFDGEELRRCYSLCSSPA-PDEISITVKRV---------PGGRVSNYLREHIQPGMTVEVMGPQG-----   93 (231)
T ss_pred             CCCCeEEEEEecCCeEEeeeeeccCCCC-CCeEEEEEEEC---------CCCccchHHHhcCCCCCEEEEeCCcc-----
Confidence            9999999998766777889999999887 68999999987         7899999997 799999999999999     


Q ss_pred             CCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         255 GNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       255 ~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                         .|.+++         ...++++||||||||||+++|++++..... ..+++|+|++|
T Consensus        94 ---~f~l~~---------~~~~~~lliagG~Gitp~~s~~~~~~~~~~-~~~v~l~~~~r  140 (231)
T cd06191          94 ---HFVYQP---------QPPGRYLLVAAGSGITPLMAMIRATLQTAP-ESDFTLIHSAR  140 (231)
T ss_pred             ---ceEeCC---------CCCCcEEEEecCccHhHHHHHHHHHHhcCC-CCCEEEEEecC
Confidence               466554         235789999999999999999999987643 57899999986

FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in

>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol

Probab=99.92  E-value=1.8e-24  Score=196.24  Aligned_cols=144  Identities=22%  Similarity=0.415  Sum_probs=120.0

Q ss_pred             EEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccC
Q psy5567          94 VPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWL  173 (314)
Q Consensus        94 ~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (314)
                      .+++|+++++++++++.|+|+.++.....                                                .+.
T Consensus         2 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~------------------------------------------------~~~   33 (236)
T cd06210           2 REAEIVAVDRVSSNVVRLRLQPDDAEGAG------------------------------------------------IAA   33 (236)
T ss_pred             ceEEEEEEeecCCceEEEEEEeCCccccc------------------------------------------------ccC
Confidence            46899999999999999999987651000                                                001


Q ss_pred             CCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEccccCcc
Q psy5567         174 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRLA  252 (314)
Q Consensus       174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~  252 (314)
                      .+.||||+.|.++  +....|+||+++.+.+.+.++|+||.+         ++|.+|+||++ +++||.|.++||.|   
T Consensus        34 ~~~pGQ~v~l~~~--~~~~~R~ySi~s~~~~~~~l~~~i~~~---------~~G~~s~~l~~~~~~Gd~v~i~gP~G---   99 (236)
T cd06210          34 EFVPGQFVEIEIP--GTDTRRSYSLANTPNWDGRLEFLIRLL---------PGGAFSTYLETRAKVGQRLNLRGPLG---   99 (236)
T ss_pred             CcCCCCEEEEEcC--CCccceecccCCCCCCCCEEEEEEEEc---------CCCccchhhhhCcCCCCEEEEecCcc---
Confidence            6899999999985  444689999999988778999999987         78999999976 99999999999999   


Q ss_pred             ccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         253 YLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       253 y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                           .|.+++         ...++++||||||||||+++|++++...+. ..+++|+|++|
T Consensus       100 -----~f~l~~---------~~~~~~vliagGtGiaP~~~~l~~~~~~~~-~~~v~l~~~~r  146 (236)
T cd06210         100 -----AFGLRE---------NGLRPRWFVAGGTGLAPLLSMLRRMAEWGE-PQEARLFFGVN  146 (236)
T ss_pred             -----eeeecC---------CCCccEEEEccCcchhHHHHHHHHHHhcCC-CceEEEEEecC
Confidence                 466554         235789999999999999999999987653 46899999986

This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.

>PRK11872 antC anthranilate dioxygenase reductase; Provisional

Probab=99.92  E-value=1.8e-24  Score=208.60  Aligned_cols=144  Identities=19%  Similarity=0.339  Sum_probs=123.1

Q ss_pred             CCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcc
Q psy5567          90 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFH  169 (314)
Q Consensus        90 p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      +.++.+++|++++.+++|++.|+|+++......                                               
T Consensus       103 ~~~~~~~~V~~i~~~s~di~~l~l~~~~~~~~~-----------------------------------------------  135 (340)
T PRK11872        103 DTLKISGVVTAVELVSETTAILHLDASAHGRQL-----------------------------------------------  135 (340)
T ss_pred             ccceeeEEEEEEEecCCCeEEEEEEcCCCCCcc-----------------------------------------------
Confidence            456788999999999999999999987542212                                               


Q ss_pred             cccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccc
Q psy5567         170 FAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPR  248 (314)
Q Consensus       170 ~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~  248 (314)
                          .+.||||++|.++  +....|+||+++.+.+.+.++|+||++         ++|.+|+||+ ++++||.|.++||+
T Consensus       136 ----~~~pGQ~v~l~~~--~~~~~R~ySias~p~~~~~l~~~ik~~---------~~G~~s~~L~~~l~~G~~v~i~gP~  200 (340)
T PRK11872        136 ----DFLPGQYARLQIP--GTDDWRSYSFANRPNATNQLQFLIRLL---------PDGVMSNYLRERCQVGDEILFEAPL  200 (340)
T ss_pred             ----CcCCCCEEEEEeC--CCCceeecccCCCCCCCCeEEEEEEEC---------CCCcchhhHhhCCCCCCEEEEEcCc
Confidence                7899999999985  445689999999988789999999998         7899999995 69999999999999


Q ss_pred             cCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       249 G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      |+        |.++.          ..++++|||||||||||++|+++++..+. .++++|+|++|
T Consensus       201 G~--------f~l~~----------~~~~~vliagGtGiaP~~s~l~~~~~~~~-~~~v~l~~g~r  247 (340)
T PRK11872        201 GA--------FYLRE----------VERPLVFVAGGTGLSAFLGMLDELAEQGC-SPPVHLYYGVR  247 (340)
T ss_pred             ce--------eEeCC----------CCCcEEEEeCCcCccHHHHHHHHHHHcCC-CCcEEEEEecC
Confidence            94        66544          34789999999999999999999987653 46899999987

>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=99.92  E-value=3.8e-24  Score=195.45  Aligned_cols=144  Identities=22%  Similarity=0.371  Sum_probs=124.6

Q ss_pred             CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567          91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF  170 (314)
Q Consensus        91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      .....++|++++.+++++++|+|+.++.  ..                                                
T Consensus        15 ~~~~~~~v~~i~~~~~~~~~i~l~~~~~--~~------------------------------------------------   44 (243)
T cd06216          15 ARELRARVVAVRPETADMVTLTLRPNRG--WP------------------------------------------------   44 (243)
T ss_pred             cceeEEEEEEEEEcCCCcEEEEEecCCC--CC------------------------------------------------
Confidence            5677999999999999999999996643  11                                                


Q ss_pred             ccCCCCCCcEEEEEeeeCCceeeeeeeeecCCC-CCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccc
Q psy5567         171 AWLGLPIGQHLSLSATINDEFVARAYTPVTSDE-HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPR  248 (314)
Q Consensus       171 ~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~-~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~  248 (314)
                         .+.||||+.|.++.++....|+||+++.+. +.+.++|.||.+         ++|.+|.||+ .+++||.|.++||+
T Consensus        45 ---~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd~v~i~gP~  112 (243)
T cd06216          45 ---GHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKAQ---------PDGLVSNWLVNHLAPGDVVELSQPQ  112 (243)
T ss_pred             ---CcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEEc---------CCCcchhHHHhcCCCCCEEEEECCc
Confidence               689999999999877777889999999887 678999999987         7899999997 59999999999999


Q ss_pred             cCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       249 G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      |        .|.++.         ...++++||||||||||++++++++...+ +..++.|+|++|
T Consensus       113 G--------~f~l~~---------~~~~~~v~iagG~Giap~~s~l~~~~~~~-~~~~i~l~~~~r  160 (243)
T cd06216         113 G--------DFVLPD---------PLPPRLLLIAAGSGITPVMSMLRTLLARG-PTADVVLLYYAR  160 (243)
T ss_pred             e--------eeecCC---------CCCCCEEEEecCccHhHHHHHHHHHHhcC-CCCCEEEEEEcC
Confidence            9        466654         23689999999999999999999998775 357899999986

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for

>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional

Probab=99.92  E-value=2e-24  Score=210.93  Aligned_cols=145  Identities=24%  Similarity=0.407  Sum_probs=122.2

Q ss_pred             CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567          91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF  170 (314)
Q Consensus        91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      ..|.+++|++++.++++++.|+|++++.....                                                
T Consensus       152 ~~~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~------------------------------------------------  183 (399)
T PRK13289        152 RGWRDFRVVKKVPESEVITSFYLEPVDGGPVA------------------------------------------------  183 (399)
T ss_pred             CCcEEEEEEEEEECCCCEEEEEEEcCCCCcCC------------------------------------------------
Confidence            57889999999999999999999977543222                                                


Q ss_pred             ccCCCCCCcEEEEEeeeCCcee--eeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEcc
Q psy5567         171 AWLGLPIGQHLSLSATINDEFV--ARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGP  247 (314)
Q Consensus       171 ~~~~~~~GQ~v~l~~~~~~~~~--~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP  247 (314)
                         .+.||||+.|.++.++...  .|+||+++.+. .+.++|+||++         ++|.+|+||++ +++||.|.++||
T Consensus       184 ---~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~-~~~l~~~Vk~~---------~~G~~S~~L~~~l~~Gd~v~v~gP  250 (399)
T PRK13289        184 ---DFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN-GKYYRISVKRE---------AGGKVSNYLHDHVNVGDVLELAAP  250 (399)
T ss_pred             ---CCCCCCeEEEEEecCCccccceeEEEeeeCCC-CCeEEEEEEEC---------CCCeehHHHhhcCCCCCEEEEEcC
Confidence               6899999999987655444  49999998876 47899999987         78999999965 999999999999


Q ss_pred             ccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         248 RGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       248 ~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      +|+        |.++.         ...++++||||||||||+++|+++++.... ..+++|+|++|
T Consensus       251 ~G~--------f~l~~---------~~~~~~vlIagGtGIaP~~s~l~~~~~~~~-~~~v~l~~~~r  299 (399)
T PRK13289        251 AGD--------FFLDV---------ASDTPVVLISGGVGITPMLSMLETLAAQQP-KRPVHFIHAAR  299 (399)
T ss_pred             ccc--------cccCC---------CCCCcEEEEecCccHHHHHHHHHHHHhcCC-CCCEEEEEEeC
Confidence            995        55543         135789999999999999999999987643 57999999987

>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=99.92  E-value=3.8e-24  Score=193.60  Aligned_cols=136  Identities=24%  Similarity=0.446  Sum_probs=116.9

Q ss_pred             EEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCC
Q psy5567          95 PLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLG  174 (314)
Q Consensus        95 ~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (314)
                      +++|++++.++++++.|+|+.+..   .                                                   .
T Consensus         2 ~~~v~~~~~~t~~~~~~~l~~~~~---~---------------------------------------------------~   27 (227)
T cd06213           2 RGTIVAQERLTHDIVRLTVQLDRP---I---------------------------------------------------A   27 (227)
T ss_pred             eEEEEEEeecCCCEEEEEEecCCC---C---------------------------------------------------C
Confidence            578999999999999999987532   1                                                   6


Q ss_pred             CCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHh-hcCCCCCeEEEEccccCccc
Q psy5567         175 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAY  253 (314)
Q Consensus       175 ~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L-~~l~~Gd~v~v~GP~G~~~y  253 (314)
                      +.||||+.|.++  +....|+||+++.+.+.+.++|+||.+         ++|.+|++| ..+++||.|.++||+|    
T Consensus        28 ~~pGQ~~~l~~~--~~~~~r~ysi~s~~~~~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~~v~i~gP~G----   92 (227)
T cd06213          28 YKAGQYAELTLP--GLPAARSYSFANAPQGDGQLSFHIRKV---------PGGAFSGWLFGADRTGERLTVRGPFG----   92 (227)
T ss_pred             cCCCCEEEEEeC--CCCcccccccCCCCCCCCEEEEEEEEC---------CCCcchHHHHhcCCCCCEEEEeCCCc----
Confidence            789999999985  333789999999988778999999987         789999999 6699999999999999    


Q ss_pred             cCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         254 LGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       254 ~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                          .|.+.+          ..++++||||||||||+++|++++..++. .++++|+|++|
T Consensus        93 ----~~~~~~----------~~~~~lliagG~GiaP~~~~~~~~~~~~~-~~~i~l~~~~r  138 (227)
T cd06213          93 ----DFWLRP----------GDAPILCIAGGSGLAPILAILEQARAAGT-KRDVTLLFGAR  138 (227)
T ss_pred             ----ceEeCC----------CCCcEEEEecccchhHHHHHHHHHHhcCC-CCcEEEEEeeC
Confidence                465543          24789999999999999999999987653 57899999986

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

Probab=99.92  E-value=2.5e-24  Score=196.49  Aligned_cols=137  Identities=22%  Similarity=0.347  Sum_probs=117.1

Q ss_pred             EEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCCC
Q psy5567          97 KLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLP  176 (314)
Q Consensus        97 ~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (314)
                      +|++++.+++++++|+|+.+..   .                                                   .++
T Consensus         1 ~v~~~~~~t~~~~~~~l~~~~~---~---------------------------------------------------~~~   26 (241)
T cd06195           1 TVLKRRDWTDDLFSFRVTRDIP---F---------------------------------------------------RFQ   26 (241)
T ss_pred             CeEEEEEcCCCEEEEEEcCCCC---C---------------------------------------------------ccC
Confidence            4789999999999999986641   2                                                   689


Q ss_pred             CCcEEEEEeeeC-CceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEE-ccccCcccc
Q psy5567         177 IGQHLSLSATIN-DEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVS-GPRGRLAYL  254 (314)
Q Consensus       177 ~GQ~v~l~~~~~-~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~-GP~G~~~y~  254 (314)
                      ||||+.|+++.+ +....|+||+++.+.+ +.++|+||++         ++|.+|+||+++++||.|.++ ||.|     
T Consensus        27 pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~i~~~i~~~---------~~G~~s~~l~~l~~Gd~v~v~~gP~G-----   91 (241)
T cd06195          27 AGQFTKLGLPNDDGKLVRRAYSIASAPYE-ENLEFYIILV---------PDGPLTPRLFKLKPGDTIYVGKKPTG-----   91 (241)
T ss_pred             CCCeEEEeccCCCCCeeeecccccCCCCC-CeEEEEEEEe---------cCCCCchHHhcCCCCCEEEECcCCCC-----
Confidence            999999998765 6678899999998866 8999999998         789999999999999999999 9999     


Q ss_pred             CCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         255 GNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       255 ~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                         .|.+++.        ...++++|||||||||||+++++++.... +..+++|+|++|
T Consensus        92 ---~f~~~~~--------~~~~~~vlIagGtGiaP~~~~l~~~~~~~-~~~~v~l~~~~r  139 (241)
T cd06195          92 ---FLTLDEV--------PPGKRLWLLATGTGIAPFLSMLRDLEIWE-RFDKIVLVHGVR  139 (241)
T ss_pred             ---ceeecCC--------CCCceEEEEeeccchhhHHHHHHHHHhhC-CCCcEEEEEccC
Confidence               4666540        13579999999999999999999998543 257899999986

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit

Probab=99.92  E-value=4.5e-24  Score=205.69  Aligned_cols=146  Identities=24%  Similarity=0.446  Sum_probs=121.8

Q ss_pred             eEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccccc
Q psy5567          93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAW  172 (314)
Q Consensus        93 ~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (314)
                      |++++|++++.++++++.|+|+.|+.....                                                  
T Consensus         1 ~~~~~V~~i~~~t~~~~~l~l~~~~~~~~~--------------------------------------------------   30 (352)
T TIGR02160         1 FHRLTVAEVERLTADAVAISFEIPDELAED--------------------------------------------------   30 (352)
T ss_pred             CeEeEEEEEEecCCCeEEEEEeCCcccccc--------------------------------------------------
Confidence            468999999999999999999987542111                                                  


Q ss_pred             CCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccccCc
Q psy5567         173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRL  251 (314)
Q Consensus       173 ~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~  251 (314)
                      ..+.||||++|.++.++....|+||+++.++ .+.++|+||++         ++|.+|+||+ ++++||.|.++||+|. 
T Consensus        31 ~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~-~~~l~i~vk~~---------~~G~~S~~l~~~l~~Gd~v~v~gP~G~-   99 (352)
T TIGR02160        31 YRFAPGQHLTLRREVDGEELRRSYSICSAPA-PGEIRVAVKKI---------PGGLFSTWANDEIRPGDTLEVMAPQGL-   99 (352)
T ss_pred             CCCCCCCeEEEEEecCCcEeeeeccccCCCC-CCcEEEEEEEe---------CCCcchHHHHhcCCCCCEEEEeCCcee-
Confidence            1689999999999766777789999998875 47999999998         7899999995 8999999999999994 


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         252 AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       252 ~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                             |.++.       .....++++|||||||||||++|+++++.++. ..+++|+|++|
T Consensus       100 -------f~~~~-------~~~~~~~~lliagG~GItP~~s~l~~~~~~~~-~~~v~l~~~~r  147 (352)
T TIGR02160       100 -------FTPDL-------STPHAGHYVAVAAGSGITPMLSIAETVLAAEP-RSTFTLVYGNR  147 (352)
T ss_pred             -------eecCC-------CccccccEEEEeccccHhHHHHHHHHHHhcCC-CceEEEEEEeC
Confidence                   55543       01124789999999999999999999987643 57899999987

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

Probab=99.92  E-value=4e-24  Score=205.08  Aligned_cols=143  Identities=21%  Similarity=0.413  Sum_probs=122.4

Q ss_pred             CCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcc
Q psy5567          90 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFH  169 (314)
Q Consensus        90 p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      |.+..+++|+++++++++++.|+|++|+.. ..                                               
T Consensus        99 ~~~~~~~~V~~~~~~~~d~~~l~l~~~~~~-~~-----------------------------------------------  130 (339)
T PRK07609         99 PVKKLPCRVASLERVAGDVMRLKLRLPATE-RL-----------------------------------------------  130 (339)
T ss_pred             cceEEEEEEEEEEcCCCcEEEEEEEcCCCC-CC-----------------------------------------------
Confidence            457889999999999999999999987542 11                                               


Q ss_pred             cccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccc
Q psy5567         170 FAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPR  248 (314)
Q Consensus       170 ~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~  248 (314)
                          .+.||||+.|.++. +  ..|+||++|.+.+.+.++|+||.+         ++|.+|+||+ .+++||.|.++||+
T Consensus       131 ----~~~pGQfv~l~~~~-~--~~R~ySias~p~~~~~l~~~ik~~---------~~G~~s~~l~~~l~~G~~v~v~gP~  194 (339)
T PRK07609        131 ----QYLAGQYIEFILKD-G--KRRSYSIANAPHSGGPLELHIRHM---------PGGVFTDHVFGALKERDILRIEGPL  194 (339)
T ss_pred             ----ccCCCCeEEEECCC-C--ceeeeecCCCCCCCCEEEEEEEec---------CCCccHHHHHHhccCCCEEEEEcCc
Confidence                68999999999852 2  479999999988779999999988         7899999995 79999999999999


Q ss_pred             cCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       249 G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      |        .|.+++         ...++++|||||||||||++|+++++..+. .++++|+|++|
T Consensus       195 G--------~~~~~~---------~~~~~ivlIagGtGiaP~~s~l~~~~~~~~-~~~i~l~~g~r  242 (339)
T PRK07609        195 G--------TFFLRE---------DSDKPIVLLASGTGFAPIKSIVEHLRAKGI-QRPVTLYWGAR  242 (339)
T ss_pred             e--------eEEecC---------CCCCCEEEEecCcChhHHHHHHHHHHhcCC-CCcEEEEEecC
Confidence            9        466543         245789999999999999999999987653 56899999986

>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=99.92  E-value=4e-24  Score=193.83  Aligned_cols=139  Identities=24%  Similarity=0.530  Sum_probs=118.7

Q ss_pred             EEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCC
Q psy5567          95 PLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLG  174 (314)
Q Consensus        95 ~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (314)
                      +++|++++.++++++.|+|+++... ..                                                   .
T Consensus         2 ~~~v~~~~~~~~~~~~~~l~~~~~~-~~---------------------------------------------------~   29 (232)
T cd06212           2 VGTVVAVEALTHDIRRLRLRLEEPE-PI---------------------------------------------------K   29 (232)
T ss_pred             ceEEEEEeecCCCeEEEEEEcCCCC-cC---------------------------------------------------C
Confidence            5789999999999999999976642 11                                                   6


Q ss_pred             CCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEccccCccc
Q psy5567         175 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRLAY  253 (314)
Q Consensus       175 ~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~y  253 (314)
                      +.||||+.|.++.  ....|+||+++.+.+.+.++|+||.+         ++|.+|++|++ +++||+|.++||+|.   
T Consensus        30 ~~pGQ~v~l~~~~--~~~~r~ySi~s~~~~~~~l~l~vk~~---------~~G~~s~~l~~~l~~G~~v~i~gP~G~---   95 (232)
T cd06212          30 FFAGQYVDITVPG--TEETRSFSMANTPADPGRLEFIIKKY---------PGGLFSSFLDDGLAVGDPVTVTGPYGT---   95 (232)
T ss_pred             cCCCCeEEEEcCC--CCcccccccCCCCCCCCEEEEEEEEC---------CCCchhhHHhhcCCCCCEEEEEcCccc---
Confidence            7999999999853  33789999999988779999999997         78999999975 999999999999994   


Q ss_pred             cCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         254 LGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       254 ~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                           |.+..         ...++++|||||||||||+++++++...+. ..+++|+|++|
T Consensus        96 -----~~~~~---------~~~~~~l~iagG~Giap~~~~l~~~~~~~~-~~~v~l~~~~r  141 (232)
T cd06212          96 -----CTLRE---------SRDRPIVLIGGGSGMAPLLSLLRDMAASGS-DRPVRFFYGAR  141 (232)
T ss_pred             -----ceecC---------CCCCcEEEEecCcchhHHHHHHHHHHhcCC-CCcEEEEEecc
Confidence                 54443         136799999999999999999999988753 46899999986

These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.

>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

Probab=99.92  E-value=6.1e-24  Score=191.93  Aligned_cols=135  Identities=24%  Similarity=0.447  Sum_probs=115.8

Q ss_pred             EEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCC
Q psy5567          96 LKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGL  175 (314)
Q Consensus        96 ~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (314)
                      ++|+++++++++++.|+|+.++.   .                                                   .+
T Consensus         1 ~~v~~~~~~t~~~~~l~l~~~~~---~---------------------------------------------------~~   26 (224)
T cd06189           1 CKVESIEPLNDDVYRVRLKPPAP---L---------------------------------------------------DF   26 (224)
T ss_pred             CEEEEEEeCCCceEEEEEecCCC---c---------------------------------------------------cc
Confidence            47899999999999999997752   2                                                   67


Q ss_pred             CCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccccCcccc
Q psy5567         176 PIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYL  254 (314)
Q Consensus       176 ~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~y~  254 (314)
                      .||||+.|.++..   ..|+||+++.+.+.+.++|+||.+         ++|.+|++|. .+++||.|.++||+|.    
T Consensus        27 ~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~~v~i~gP~G~----   90 (224)
T cd06189          27 LAGQYLDLLLDDG---DKRPFSIASAPHEDGEIELHIRAV---------PGGSFSDYVFEELKENGLVRIEGPLGD----   90 (224)
T ss_pred             CCCCEEEEEcCCC---CceeeecccCCCCCCeEEEEEEec---------CCCccHHHHHHhccCCCEEEEecCCcc----
Confidence            9999999998532   379999999988779999999998         7899999995 5999999999999994    


Q ss_pred             CCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         255 GNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       255 ~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                          |.+.+         ...++++|||||||||||++++++++.++. ..+++|+|++|
T Consensus        91 ----~~~~~---------~~~~~ivliagG~GiaP~~~~l~~l~~~~~-~~~v~l~~~~r  136 (224)
T cd06189          91 ----FFLRE---------DSDRPLILIAGGTGFAPIKSILEHLLAQGS-KRPIHLYWGAR  136 (224)
T ss_pred             ----EEecc---------CCCCCEEEEecCcCHHHHHHHHHHHHhcCC-CCCEEEEEecC
Confidence                55544         136789999999999999999999987653 57899999986

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.

>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain

Probab=99.92  E-value=5.2e-24  Score=191.11  Aligned_cols=135  Identities=25%  Similarity=0.450  Sum_probs=114.5

Q ss_pred             EEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCC
Q psy5567          95 PLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLG  174 (314)
Q Consensus        95 ~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (314)
                      .++|++++.++++++.|+|+.++.   .                                                   .
T Consensus         2 ~~~v~~~~~~~~~~~~~~l~~~~~---~---------------------------------------------------~   27 (218)
T cd06196           2 TVTLLSIEPVTHDVKRLRFDKPEG---Y---------------------------------------------------D   27 (218)
T ss_pred             ceEEEEEEEcCCCeEEEEEcCCCc---C---------------------------------------------------C
Confidence            578999999999999999997653   2                                                   6


Q ss_pred             CCCCcEEEEEeeeCC-ceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCccc
Q psy5567         175 LPIGQHLSLSATIND-EFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAY  253 (314)
Q Consensus       175 ~~~GQ~v~l~~~~~~-~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y  253 (314)
                      +.||||+.|.++.++ ....|+||+++.+.+ +.++|+||++        +.+|.+|++|+++++||.|.++||+|+   
T Consensus        28 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~l~~~vk~~--------~~~g~~s~~l~~l~~G~~v~i~gP~G~---   95 (218)
T cd06196          28 FTPGQATEVAIDKPGWRDEKRPFTFTSLPED-DVLEFVIKSY--------PDHDGVTEQLGRLQPGDTLLIEDPWGA---   95 (218)
T ss_pred             CCCCCEEEEEeeCCCCCccccccccccCCCC-CeEEEEEEEc--------CCCCcHhHHHHhCCCCCEEEEECCccc---
Confidence            799999999987544 346899999998865 8999999987        234889999999999999999999995   


Q ss_pred             cCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         254 LGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       254 ~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                           |..             .++++|||||||||||++++++++..+. ..+++|+|++|
T Consensus        96 -----~~~-------------~~~~vlia~GtGiaP~~s~l~~~~~~~~-~~~v~l~~~~r  137 (218)
T cd06196          96 -----IEY-------------KGPGVFIAGGAGITPFIAILRDLAAKGK-LEGNTLIFANK  137 (218)
T ss_pred             -----eEe-------------cCceEEEecCCCcChHHHHHHHHHhCCC-CceEEEEEecC
Confidence                 332             1468999999999999999999987653 56899999986

The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase

Probab=99.92  E-value=1.1e-23  Score=191.53  Aligned_cols=145  Identities=26%  Similarity=0.492  Sum_probs=121.4

Q ss_pred             eEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccccc
Q psy5567          93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAW  172 (314)
Q Consensus        93 ~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (314)
                      ++.++|+++++++++++.|+|+++.+....                                             +    
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------~----   31 (241)
T cd06214           1 FHPLTVAEVVRETADAVSITFDVPEELRDA---------------------------------------------F----   31 (241)
T ss_pred             CceEEEEEEEecCCCeEEEEEecCcccCCC---------------------------------------------C----
Confidence            357899999999999999999987653210                                             0    


Q ss_pred             CCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccccCc
Q psy5567         173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRL  251 (314)
Q Consensus       173 ~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~  251 (314)
                       .+.||||+.|.++.++....|+||+++.+++. +++|+||++         ++|.+|.||. ++++|+.+.++||.|. 
T Consensus        32 -~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~~-~l~~~i~~~---------~~G~~s~~l~~~~~~G~~v~i~gP~G~-   99 (241)
T cd06214          32 -RYRPGQFLTLRVPIDGEEVRRSYSICSSPGDD-ELRITVKRV---------PGGRFSNWANDELKAGDTLEVMPPAGR-   99 (241)
T ss_pred             -CcCCCCeEEEEeecCCCeeeeeeeecCCCCCC-cEEEEEEEc---------CCCccchhHHhccCCCCEEEEeCCccc-
Confidence             67999999999986666788999999987654 899999998         7899999995 8999999999999995 


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         252 AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       252 ~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                             |.+.+        ....++++|||||||||||+++++++..... .++++|+|++|
T Consensus       100 -------~~~~~--------~~~~~~~llia~GtGiap~~~~~~~~~~~~~-~~~v~l~~~~r  146 (241)
T cd06214         100 -------FTLPP--------LPGARHYVLFAAGSGITPVLSILKTALAREP-ASRVTLVYGNR  146 (241)
T ss_pred             -------cccCC--------CCCCCcEEEEecccChhhHHHHHHHHHhcCC-CCcEEEEEEeC
Confidence                   44433        0136899999999999999999999987753 57899999986

PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and

>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

Probab=99.91  E-value=7.5e-24  Score=188.68  Aligned_cols=114  Identities=31%  Similarity=0.591  Sum_probs=99.7

Q ss_pred             CCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCccc
Q psy5567         174 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAY  253 (314)
Q Consensus       174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y  253 (314)
                      .+.||||+.|.++.++....|+||+++.+.+.+.++|+||.+         ++|.+|+||+++++||.|.++||.|+   
T Consensus        22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~~l~vk~~---------~~G~~s~~l~~~~~G~~v~i~gP~G~---   89 (223)
T cd00322          22 SFKPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTVKIV---------PGGPFSAWLHDLKPGDEVEVSGPGGD---   89 (223)
T ss_pred             CcCCCcEEEEEecCCCCcceeeeeccCCCCCCCeEEEEEEEe---------CCCchhhHHhcCCCCCEEEEECCCcc---
Confidence            678999999999766667889999999988779999999998         68999999999999999999999995   


Q ss_pred             cCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         254 LGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       254 ~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                           |.+..         ...++++||||||||||+++|++++.... +..+++|+|++|
T Consensus        90 -----~~~~~---------~~~~~~v~ia~G~Giap~~~~l~~~~~~~-~~~~v~l~~~~r  135 (223)
T cd00322          90 -----FFLPL---------EESGPVVLIAGGIGITPFRSMLRHLAADK-PGGEITLLYGAR  135 (223)
T ss_pred             -----cccCc---------ccCCcEEEEecCCchhHHHHHHHHHHhhC-CCCcEEEEEecC
Confidence                 43222         24689999999999999999999998764 357899999986

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in

>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system

Probab=99.91  E-value=9.9e-24  Score=190.97  Aligned_cols=135  Identities=27%  Similarity=0.465  Sum_probs=113.6

Q ss_pred             EEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCCCC
Q psy5567          98 LKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPI  177 (314)
Q Consensus        98 l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (314)
                      |++++.++++++.|+|+.+..   .                                                   .++|
T Consensus         1 ~~~~~~~t~~~~~~~l~~~~~---~---------------------------------------------------~~~p   26 (232)
T cd06190           1 LVDVRELTHDVAEFRFALDGP---A---------------------------------------------------DFLP   26 (232)
T ss_pred             CCceEEcCCCEEEEEEEcCCc---c---------------------------------------------------ccCC
Confidence            468899999999999997643   1                                                   6799


Q ss_pred             CcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEccccCccccCC
Q psy5567         178 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRLAYLGN  256 (314)
Q Consensus       178 GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~y~~~  256 (314)
                      |||+.|.++  +....|+||+++.+.+.+.++|+||.+         ++|.+|++|++ +++||.|.++||+|.      
T Consensus        27 GQ~v~l~~~--~~~~~r~ySi~s~~~~~~~~~~~vk~~---------~~G~~s~~l~~~~~~g~~v~v~gP~G~------   89 (232)
T cd06190          27 GQYALLALP--GVEGARAYSMANLANASGEWEFIIKRK---------PGGAASNALFDNLEPGDELELDGPYGL------   89 (232)
T ss_pred             CCEEEEECC--CCCcccCccCCcCCCCCCEEEEEEEEc---------CCCcchHHHhhcCCCCCEEEEECCccc------
Confidence            999999985  333679999999888778999999987         78999999965 799999999999995      


Q ss_pred             cceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCC-CCCccEEEEEEeC
Q psy5567         257 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP-TDNTKMSLIFANQ  314 (314)
Q Consensus       257 g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~-~~~~~v~Li~~~r  314 (314)
                        |.+.+         ...++++||||||||||+++|++++...+ .+..+++|+|++|
T Consensus        90 --~~~~~---------~~~~~illIagG~GiaP~~~~l~~~~~~~~~~~~~v~l~~~~r  137 (232)
T cd06190          90 --AYLRP---------DEDRDIVCIAGGSGLAPMLSILRGAARSPYLSDRPVDLFYGGR  137 (232)
T ss_pred             --ceecC---------CCCCcEEEEeeCcCHHHHHHHHHHHHhcccCCCCeEEEEEeec
Confidence              44432         13578999999999999999999998762 2357899999986

Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.

>PRK05802 hypothetical protein; Provisional

Probab=99.91  E-value=1.8e-23  Score=200.96  Aligned_cols=148  Identities=16%  Similarity=0.260  Sum_probs=122.0

Q ss_pred             CCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcc
Q psy5567          90 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFH  169 (314)
Q Consensus        90 p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      +...++++|+++++++++++.|+|+.|+.....                                               
T Consensus        61 ~~~~~~~~I~~~~~~t~dv~~l~l~~p~~~~~~-----------------------------------------------   93 (320)
T PRK05802         61 GRKTYECKIIKKENIEDNLIILTLKVPHKLARD-----------------------------------------------   93 (320)
T ss_pred             ccccEeEEEEEEEEecCCEEEEEEECCchhhhc-----------------------------------------------
Confidence            356778999999999999999999987542111                                               


Q ss_pred             cccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEcccc
Q psy5567         170 FAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRG  249 (314)
Q Consensus       170 ~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G  249 (314)
                          .+.||||++|+++..+....||||+++.+.+.+.++|+||+.           |.+|++|+++++||+|.++||+|
T Consensus        94 ----~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~~g~l~l~ik~~-----------G~~T~~L~~l~~Gd~l~v~GP~G  158 (320)
T PRK05802         94 ----LVYPGSFVFLRNKNSSSFFDVPISIMEADTEENIIKVAIEIR-----------GVKTKKIAKLNKGDEILLRGPYW  158 (320)
T ss_pred             ----cCCCCceEEEEEcCCCCEeEEeeEecccCCCCCEEEEEEEec-----------ChhHHHHhcCCCCCEEEEeCCCC
Confidence                468999999998754555679999999988889999999964           99999999999999999999997


Q ss_pred             CccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         250 RLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       250 ~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                            ||.|.+.+.      +....++++|||||+||||++++++++++++   .+++|+|++|
T Consensus       159 ------nG~F~l~~~------~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~---~~v~li~g~r  208 (320)
T PRK05802        159 ------NGILGLKNI------KSTKNGKSLVIARGIGQAPGVPVIKKLYSNG---NKIIVIIDKG  208 (320)
T ss_pred             ------cCcCCcccc------cccCCCeEEEEEeEEeHHHHHHHHHHHHHcC---CcEEEEEeCC
Confidence                  345655321      0123468999999999999999999998875   3799999986

>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

Probab=99.91  E-value=1.8e-23  Score=187.89  Aligned_cols=135  Identities=27%  Similarity=0.484  Sum_probs=115.1

Q ss_pred             EEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCCCC
Q psy5567          98 LKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPI  177 (314)
Q Consensus        98 l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (314)
                      |+++++++++++.|+|+.++.   .                                                   .+.|
T Consensus         1 v~~~~~~~~~~~~~~l~~~~~---~---------------------------------------------------~~~p   26 (224)
T cd06187           1 VVSVERLTHDIAVVRLQLDQP---L---------------------------------------------------PFWA   26 (224)
T ss_pred             CeeeeecCCCEEEEEEEeCCC---C---------------------------------------------------CcCC
Confidence            478899999999999997754   2                                                   6789


Q ss_pred             CcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEccccCccccCC
Q psy5567         178 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRLAYLGN  256 (314)
Q Consensus       178 GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~y~~~  256 (314)
                      |||+.|.++..+ ...|+||+++.+.+.+.++|+||.+         ++|.+|+||++ +++||.|.++||+|.      
T Consensus        27 Gq~i~l~~~~~~-~~~r~ysi~s~~~~~~~~~~~i~~~---------~~G~~s~~l~~~l~~G~~v~i~gP~G~------   90 (224)
T cd06187          27 GQYVNVTVPGRP-RTWRAYSPANPPNEDGEIEFHVRAV---------PGGRVSNALHDELKVGDRVRLSGPYGT------   90 (224)
T ss_pred             CceEEEEcCCCC-CcceeccccCCCCCCCEEEEEEEeC---------CCCcchHHHhhcCccCCEEEEeCCccc------
Confidence            999999986432 3679999999988778999999987         68999999976 999999999999994      


Q ss_pred             cceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         257 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       257 g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                        |.+.+         ...++++||||||||||+++|++++..++ +..+++|+|++|
T Consensus        91 --~~~~~---------~~~~~~lliagG~GI~p~~sll~~~~~~~-~~~~v~l~~~~~  136 (224)
T cd06187          91 --FYLRR---------DHDRPVLCIAGGTGLAPLRAIVEDALRRG-EPRPVHLFFGAR  136 (224)
T ss_pred             --eEecC---------CCCCCEEEEecCcCHHHHHHHHHHHHhcC-CCCCEEEEEecC
Confidence              55543         13578999999999999999999998765 357899999986

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional

Probab=99.91  E-value=2.4e-23  Score=205.45  Aligned_cols=153  Identities=22%  Similarity=0.348  Sum_probs=123.1

Q ss_pred             ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccc
Q psy5567          92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFA  171 (314)
Q Consensus        92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (314)
                      ...+++|++++.++++++.|+|++++... .                                                 
T Consensus       132 ~~~~~~V~~~~~ls~~i~~l~l~~~~~~~-~-------------------------------------------------  161 (409)
T PRK05464        132 KKWECTVISNDNVATFIKELVLKIPEGEE-V-------------------------------------------------  161 (409)
T ss_pred             eEEEEEEEEcccCCchhheEEEecCCCCc-c-------------------------------------------------
Confidence            45689999999999999999999875421 1                                                 


Q ss_pred             cCCCCCCcEEEEEeeeC-----------------------------CceeeeeeeeecCCCCCceEEEEEEEEeecCCCC
Q psy5567         172 WLGLPIGQHLSLSATIN-----------------------------DEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPK  222 (314)
Q Consensus       172 ~~~~~~GQ~v~l~~~~~-----------------------------~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~  222 (314)
                        .|+||||++|.++..                             +....|+||+++.+.+.+.++|+||++.+..-.+
T Consensus       162 --~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p~~~~~l~~~vr~~~~~~~~~  239 (409)
T PRK05464        162 --PFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAYSMANYPEEKGIIMLNVRIATPPPGNP  239 (409)
T ss_pred             --cccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeeeccCCCCCCCCeEEEEEEEeecCCCcC
Confidence              578999999998631                             2356799999999988889999999853221111


Q ss_pred             CCCCChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCC
Q psy5567         223 FPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT  302 (314)
Q Consensus       223 ~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~  302 (314)
                      ..++|.+|.||+++++||.|.++||.|+        |.+..          ..++++|||||||||||++|+++++.+..
T Consensus       240 ~~~~G~~S~~L~~l~~Gd~v~v~gP~G~--------f~~~~----------~~~~ivlIAgGtGIaP~~sml~~~l~~~~  301 (409)
T PRK05464        240 DVPPGIMSSYIFSLKPGDKVTISGPFGE--------FFAKD----------TDAEMVFIGGGAGMAPMRSHIFDQLKRLK  301 (409)
T ss_pred             CCCCCchhhHHHhCCCCCEEEEEccccC--------cEecC----------CCceEEEEEeccChhHHHHHHHHHHhCCC
Confidence            1257999999999999999999999995        54433          35789999999999999999998877643


Q ss_pred             CCccEEEEEEeC
Q psy5567         303 DNTKMSLIFANQ  314 (314)
Q Consensus       303 ~~~~v~Li~~~r  314 (314)
                      ...+++|+|++|
T Consensus       302 ~~~~v~L~~g~r  313 (409)
T PRK05464        302 SKRKISFWYGAR  313 (409)
T ss_pred             CCceEEEEEecC
Confidence            357899999986

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.91  E-value=3.8e-23  Score=226.97  Aligned_cols=163  Identities=25%  Similarity=0.490  Sum_probs=137.0

Q ss_pred             cccccccCCCceEEEEEEEEE---EeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeee
Q psy5567          82 KELKTLVDPDVKVPLKLKEKI---EINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRV  158 (314)
Q Consensus        82 ~~~~~~l~p~~~~~~~l~~~~---~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (314)
                      +.++..+++.+|.+++|++++   +++++++.|+|++|+....+                                    
T Consensus       903 ~~~~~~~~~~~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~------------------------------------  946 (1167)
T PTZ00306        903 QKKKYGLSKDKWTTVVVREVREGGQFGTGSRVLRFNLPGALQRS------------------------------------  946 (1167)
T ss_pred             hccCcccCCCceEEEEEEEEeccccccCCeEEEEEECCCccccc------------------------------------
Confidence            345688999999999999998   56999999999998653322                                    


Q ss_pred             ccCCCCCCCcccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCC
Q psy5567         159 VSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKV  238 (314)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~  238 (314)
                                     ++.|||||.|+.+.++....|+|||+|.+++.+.++|+||.          ++|.+|+||++|++
T Consensus       947 ---------------~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~~~~i~l~Vr~----------~~G~~S~~L~~l~~ 1001 (1167)
T PTZ00306        947 ---------------GLTLGQFIAIRGDWDGQQLIGYYSPITLPDDLGVISILARG----------DKGTLKEWISALRP 1001 (1167)
T ss_pred             ---------------CCCCCeEEEEEeeeCCeEEEEEeccCCCCCCCCeEEEEEEc----------CCChhHHHHhhCCC
Confidence                           78999999999877777889999999999888999999984          67999999999999


Q ss_pred             CCeEEEEccccCcccc--CCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCC--CCCccEEEEEEeC
Q psy5567         239 GEPINVSGPRGRLAYL--GNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP--TDNTKMSLIFANQ  314 (314)
Q Consensus       239 Gd~v~v~GP~G~~~y~--~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~--~~~~~v~Li~~~r  314 (314)
                      ||+|+++||.|.+.+.  ..+.|.++.         ...++++|||||||||||+||++++++++  .+.++++|+|++|
T Consensus      1002 Gd~v~v~gp~G~~~~~~p~~~~f~~~~---------~~~~~ivlIAGGtGItP~~sml~~~l~~~~~~~~~~i~Llyg~r 1072 (1167)
T PTZ00306       1002 GDSVEMKACGGLRIERRPADKQFVFRG---------HVIRKLALIAGGTGVAPMLQIIRAALKKPYVDSIESIRLIYAAE 1072 (1167)
T ss_pred             CCEEEEeCCcCccccccCccceeeecc---------CCCceEEEEECCccHhHHHHHHHHHHhCcccCCCceEEEEEEeC
Confidence            9999999998854332  234577654         24689999999999999999999998765  2346899999987

>PRK05713 hypothetical protein; Provisional

Probab=99.90  E-value=3.4e-23  Score=197.24  Aligned_cols=140  Identities=20%  Similarity=0.356  Sum_probs=118.0

Q ss_pred             eEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccccc
Q psy5567          93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAW  172 (314)
Q Consensus        93 ~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (314)
                      ..+++|++++++++|++.|+|+.+..   .                                                  
T Consensus        91 ~~~~~V~~~~~~t~dv~~l~l~~~~~---~--------------------------------------------------  117 (312)
T PRK05713         91 GLPARVVALDWLGGDVLRLRLEPERP---L--------------------------------------------------  117 (312)
T ss_pred             cCCeEEEEEecCCCCEEEEEEccCCc---C--------------------------------------------------
Confidence            35699999999999999999985421   2                                                  


Q ss_pred             CCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCcc
Q psy5567         173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLA  252 (314)
Q Consensus       173 ~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~  252 (314)
                       .+.||||++|.++  + ...|+||+++.|.+.+.++|+||++         ++|.+|++|+++++||+|.++||.|.  
T Consensus       118 -~~~~GQfv~l~~~--~-~~~R~ySias~p~~~~~l~~~I~~~---------~~G~~s~~l~~l~~Gd~v~l~~p~gg--  182 (312)
T PRK05713        118 -RYRAGQHLVLWTA--G-GVARPYSLASLPGEDPFLEFHIDCS---------RPGAFCDAARQLQVGDLLRLGELRGG--  182 (312)
T ss_pred             -CcCCCCEEEEecC--C-CcccccccCcCCCCCCeEEEEEEEc---------CCCccchhhhcCCCCCEEEEccCCCC--
Confidence             6899999999874  3 3689999999988778999999987         78999999999999999999999983  


Q ss_pred             ccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         253 YLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       253 y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                           .|.+++        ....++++|||||||||||++|++++++.+. ..+++|+|++|
T Consensus       183 -----~~~~~~--------~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~-~~~v~l~~g~r  230 (312)
T PRK05713        183 -----ALHYDP--------DWQERPLWLLAAGTGLAPLWGILREALRQGH-QGPIRLLHLAR  230 (312)
T ss_pred             -----ceEecC--------CCCCCcEEEEecCcChhHHHHHHHHHHhcCC-CCcEEEEEEcC
Confidence                 344443        0134789999999999999999999987763 46899999987

>PRK08051 fre FMN reductase; Validated

Probab=99.90  E-value=6.9e-23  Score=186.85  Aligned_cols=138  Identities=17%  Similarity=0.246  Sum_probs=115.6

Q ss_pred             eEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccccc
Q psy5567          93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAW  172 (314)
Q Consensus        93 ~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (314)
                      +.+++|++++.++++++.|+|+.++.   .                                                  
T Consensus         2 ~~~~~v~~i~~~~~~~~~l~l~~~~~---~--------------------------------------------------   28 (232)
T PRK08051          2 TLSCKVTSVEAITDTVYRVRLVPEAP---F--------------------------------------------------   28 (232)
T ss_pred             eeEEEEEEEecCCCCeEEEEEecCCC---C--------------------------------------------------
Confidence            57899999999999999999986542   1                                                  


Q ss_pred             CCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHh-hcCCCCCeEEEEccccCc
Q psy5567         173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRL  251 (314)
Q Consensus       173 ~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L-~~l~~Gd~v~v~GP~G~~  251 (314)
                       .++||||+++.++.   ...|+||+++.+.+++.++|+||..         ++|..+.++ +++++||.|.+.||+|. 
T Consensus        29 -~~~pGQ~v~l~~~~---~~~r~ySias~p~~~~~l~~~v~~~---------~~~~~~~~~~~~l~~G~~v~v~gP~G~-   94 (232)
T PRK08051         29 -SFRAGQYLMVVMGE---KDKRPFSIASTPREKGFIELHIGAS---------ELNLYAMAVMERILKDGEIEVDIPHGD-   94 (232)
T ss_pred             -ccCCCCEEEEEcCC---CcceeecccCCCCCCCcEEEEEEEc---------CCCcchHHHHHHcCCCCEEEEEcCCCc-
Confidence             67999999999853   3569999999987778999999987         567666666 89999999999999995 


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         252 AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       252 ~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                             |.+.+         ...++++||||||||||+++|+++++..+. ..++.|+|++|
T Consensus        95 -------~~~~~---------~~~~~~vliagG~GiaP~~~~l~~~~~~~~-~~~v~l~~g~r  140 (232)
T PRK08051         95 -------AWLRE---------ESERPLLLIAGGTGFSYARSILLTALAQGP-NRPITLYWGGR  140 (232)
T ss_pred             -------eEccC---------CCCCcEEEEecCcCcchHHHHHHHHHHhCC-CCcEEEEEEec
Confidence                   44433         135789999999999999999999987653 57899999987

>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins

Probab=99.90  E-value=3e-23  Score=188.58  Aligned_cols=139  Identities=24%  Similarity=0.386  Sum_probs=111.0

Q ss_pred             EEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCCCCCc
Q psy5567         100 EKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQ  179 (314)
Q Consensus       100 ~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ  179 (314)
                      +++.+++|++.|+|+++++....                                                   +|.|||
T Consensus         2 ~~~~~s~~v~~~~l~~~~~~~~~---------------------------------------------------~~~pGQ   30 (220)
T cd06197           2 KSEVITPTLTRFTFELSPPDVVG---------------------------------------------------KWTPGQ   30 (220)
T ss_pred             cceecccceeEEEEEecCCcccc---------------------------------------------------ccCCCc
Confidence            57889999999999998653322                                                   789999


Q ss_pred             EEEEEeeeC----------------CceeeeeeeeecCCCCC---ceEEEEEEEEeecCCCCCCCCChhchHhhcCC--C
Q psy5567         180 HLSLSATIN----------------DEFVARAYTPVTSDEHH---GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMK--V  238 (314)
Q Consensus       180 ~v~l~~~~~----------------~~~~~R~YTp~s~~~~~---g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~--~  238 (314)
                      |+.|.++..                ++...|+||++|.+.+.   ++++|+||..           |.+|++|.++.  .
T Consensus        31 ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~vk~~-----------G~~T~~L~~~~~~~   99 (220)
T cd06197          31 YITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITVRKK-----------GPVTGFLFQVARRL   99 (220)
T ss_pred             eEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEEEeC-----------CCCCHHHHHhhhcc
Confidence            999998631                23467999999998654   7999999964           99999997653  3


Q ss_pred             ---CCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         239 ---GEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       239 ---Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                         |+.+.++||.|.        |.++..      .....++++|||||||||||++|+++++....+.++++|+|++|
T Consensus       100 ~~~G~~v~v~gP~G~--------f~~~~~------~~~~~~~illIagG~GItP~~sil~~l~~~~~~~~~v~l~~~~r  164 (220)
T cd06197         100 REQGLEVPVLGVGGE--------FTLSLP------GEGAERKMVWIAGGVGITPFLAMLRAILSSRNTTWDITLLWSLR  164 (220)
T ss_pred             cCCCceEEEEecCCc--------ccCCcc------cccCCceEEEEecccchhhHHHHHHHHHhcccCCCcEEEEEEec
Confidence               999999999995        544320      00235789999999999999999999987654457999999987

Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity

>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins

Probab=99.90  E-value=6.2e-23  Score=187.94  Aligned_cols=133  Identities=20%  Similarity=0.346  Sum_probs=112.4

Q ss_pred             EEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCCCC
Q psy5567          98 LKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPI  177 (314)
Q Consensus        98 l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (314)
                      |++++++++++++|+|+.|+.  ..                                                   .++|
T Consensus         1 i~~~~~~t~~~~~l~l~~~~~--~~---------------------------------------------------~~~p   27 (243)
T cd06192           1 IVKKEQLEPNLVLLTIKAPLA--AR---------------------------------------------------LFRP   27 (243)
T ss_pred             CceEEEecCCEEEEEEEccch--hh---------------------------------------------------cCCC
Confidence            468899999999999998653  12                                                   6799


Q ss_pred             CcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCccccCCc
Q psy5567         178 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNG  257 (314)
Q Consensus       178 GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g  257 (314)
                      |||++|.++.++....|+||+++.+.+.++++|+||..           |.+|+||.++++||.|.++||+|++.     
T Consensus        28 GQ~v~l~~~~~~~~~~rpySi~s~~~~~~~l~l~i~~~-----------G~~t~~l~~~~~G~~l~i~gP~G~~~-----   91 (243)
T cd06192          28 GQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVEIR-----------GPKTKLIAELKPGEKLDVMGPLGNGF-----   91 (243)
T ss_pred             CCeEEEecCCCCCceeeeeEeeecCCCCCEEEEEEEEc-----------CchHHHHHhCCCCCEEEEEccCCCCC-----
Confidence            99999998654556789999999988789999999963           89999999999999999999999532     


Q ss_pred             ceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         258 EFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       258 ~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                         ..+         ...++++|||||||||||++|++++..++   .+++|+|++|
T Consensus        92 ---~~~---------~~~~~~lliagGtGiap~~~~l~~~~~~~---~~v~l~~~~r  133 (243)
T cd06192          92 ---EGP---------KKGGTVLLVAGGIGLAPLLPIAKKLAANG---NKVTVLAGAK  133 (243)
T ss_pred             ---ccC---------CCCCEEEEEeCcccHHHHHHHHHHHHHCC---CeEEEEEecC
Confidence               221         13578999999999999999999998763   5899999986

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

Probab=99.90  E-value=3.2e-23  Score=204.38  Aligned_cols=153  Identities=22%  Similarity=0.372  Sum_probs=122.7

Q ss_pred             CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567          91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF  170 (314)
Q Consensus        91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      ....+++|++++.++++++.|+|++++... .                                                
T Consensus       127 ~~~~~~~v~~~~~~s~~i~~l~l~~~~~~~-~------------------------------------------------  157 (405)
T TIGR01941       127 VKKWECEVISNDNVATFIKELVLKLPDGES-V------------------------------------------------  157 (405)
T ss_pred             cceeeeEEEEcccccchhheEEEecCCCce-e------------------------------------------------
Confidence            345679999999999999999999875421 1                                                


Q ss_pred             ccCCCCCCcEEEEEeeeC-----------------------------CceeeeeeeeecCCCCCceEEEEEEEEeecC-C
Q psy5567         171 AWLGLPIGQHLSLSATIN-----------------------------DEFVARAYTPVTSDEHHGYMDLVVKVYFKNV-H  220 (314)
Q Consensus       171 ~~~~~~~GQ~v~l~~~~~-----------------------------~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~-~  220 (314)
                         .|.||||+++.++..                             +....|+||++|.+.+.+.++|+||+..++. +
T Consensus       158 ---~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p~~~~~l~~~vr~~~~~~~~  234 (405)
T TIGR01941       158 ---PFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAYSMANYPAEKGIIKLNVRIATPPFIN  234 (405)
T ss_pred             ---eecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceeecCCCCCCCCCeEEEEEEEeccCccc
Confidence               578999999988632                             2346799999999988899999999852221 1


Q ss_pred             CCCCCCChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhC
Q psy5567         221 PKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD  300 (314)
Q Consensus       221 ~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~  300 (314)
                      .+. ++|.+|.||+++++||.|.++||+|+        |.+.+          ..++++|||||||||||++|+++++.+
T Consensus       235 ~~~-~~G~~S~~L~~l~~Gd~v~i~gP~G~--------f~l~~----------~~~~lvlIAgGtGIaP~lsmi~~~l~~  295 (405)
T TIGR01941       235 SDI-PPGIMSSYIFSLKPGDKVTISGPFGE--------FFAKD----------TDAEMVFIGGGAGMAPMRSHIFDQLKR  295 (405)
T ss_pred             CCC-CCCcHHHHHhcCCCcCEEEEEeccCC--------CeecC----------CCCCEEEEecCcCcchHHHHHHHHHhc
Confidence            122 57999999999999999999999995        55443          247899999999999999999987765


Q ss_pred             CCCCccEEEEEEeC
Q psy5567         301 PTDNTKMSLIFANQ  314 (314)
Q Consensus       301 ~~~~~~v~Li~~~r  314 (314)
                      .....+++|+|++|
T Consensus       296 ~~~~~~v~l~~g~R  309 (405)
T TIGR01941       296 LKSKRKISFWYGAR  309 (405)
T ss_pred             CCCCCeEEEEEecC
Confidence            33356899999986

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E

Probab=99.90  E-value=5.8e-23  Score=194.19  Aligned_cols=143  Identities=23%  Similarity=0.377  Sum_probs=116.2

Q ss_pred             CceEEEEEEEEEEeC----CCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCC
Q psy5567          91 DVKVPLKLKEKIEIN----HDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEP  166 (314)
Q Consensus        91 ~~~~~~~l~~~~~ls----~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (314)
                      ..+.+++|++++.++    ++++.|+|++++..+.. .                                          
T Consensus        43 ~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~-~------------------------------------------   79 (289)
T cd06201          43 PRTKALELVERKDYGAAVQAPTAILRFKPAKRKLSG-K------------------------------------------   79 (289)
T ss_pred             CCccceEEEeeeecCCCCCCccEEEEEeCCCccccc-C------------------------------------------
Confidence            468899999999999    69999999987631100 0                                          


Q ss_pred             CcccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEc
Q psy5567         167 PFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSG  246 (314)
Q Consensus       167 ~~~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~G  246 (314)
                          .+..+.||||+.|..  ++....|+|||++.+. ++.++|+||.+         ++|.+|+||+++++||.|.+++
T Consensus        80 ----~~~~~~pGQ~v~v~~--~g~~~~R~YSias~p~-~g~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~~  143 (289)
T cd06201          80 ----GLPSFEAGDLLGILP--PGSDVPRFYSLASSSS-DGFLEICVRKH---------PGGLCSGYLHGLKPGDTIKAFI  143 (289)
T ss_pred             ----CCCCcCccCEEEEec--CCCCCCceEecCCCCC-CCeEEEEEEeC---------CCccchhhHhhCCCcCEEEEEe
Confidence                011689999999975  4556779999999884 58999999987         7899999999999999999985


Q ss_pred             -cccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         247 -PRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       247 -P~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                       |.|        .|.++.          ..++++|||||||||||++|+++..    +.++++|+|++|
T Consensus       144 ~~~g--------~F~~~~----------~~~~lvlIAgGtGIaP~~s~l~~~~----~~~~v~L~~g~r  190 (289)
T cd06201         144 RPNP--------SFRPAK----------GAAPVILIGAGTGIAPLAGFIRANA----ARRPMHLYWGGR  190 (289)
T ss_pred             ccCC--------CccCCC----------CCCCEEEEecCcCHHHHHHHHHhhh----ccCCEEEEEEec
Confidence             666        566543          3578999999999999999999863    246799999987

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F

>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.90  E-value=9.6e-23  Score=189.60  Aligned_cols=137  Identities=31%  Similarity=0.545  Sum_probs=122.3

Q ss_pred             EEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCC
Q psy5567          95 PLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLG  174 (314)
Q Consensus        95 ~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (314)
                      .++|++++.++++++.|+|+.+...  +                                                   .
T Consensus         9 ~~~I~~~~~is~~~~~l~~~~~~~~--~---------------------------------------------------~   35 (252)
T COG0543           9 SYKVVEKEEISPDTFLLRLRLPFVA--L---------------------------------------------------T   35 (252)
T ss_pred             ccEEEEEEEecCceEEEEEeccccc--c---------------------------------------------------c
Confidence            6999999999999999999988664  3                                                   6


Q ss_pred             CCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCcccc
Q psy5567         175 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYL  254 (314)
Q Consensus       175 ~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~  254 (314)
                      +.||||++|+.+.   ...||||+++.+++.|.++|.|+++         +.|++|.++..+++||.|.++||+|+    
T Consensus        36 ~~pGQfv~l~~~~---~~~~P~si~~~~~~~g~~~l~i~~~---------~~G~~T~~i~~~k~gd~i~v~GP~G~----   99 (252)
T COG0543          36 FKPGQFVMLRVPG---GVRRPYSLASAPDDKGELELHIRVY---------EVGKVTKYIFGLKEGDKIRVRGPLGN----   99 (252)
T ss_pred             cCCCcEEEEEeCC---CcEEEeeeccCCCcCCcEEEEEEEE---------eCChHHHHHhhccCCCEEEEEcCCCC----
Confidence            8999999999964   6789999999999889999999998         88999999999999999999999996    


Q ss_pred             CCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         255 GNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       255 ~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                         .|....          ..+++++||||||+||++++++++.+++ +..+|+++|++|
T Consensus       100 ---~~~~~~----------~~~~vlliagGtG~aPl~~i~~~~~~~~-~~~~V~~~~G~~  145 (252)
T COG0543         100 ---GFLREK----------IGKPVLLIAGGTGIAPLYAIAKELKEKG-DANKVTLLYGAR  145 (252)
T ss_pred             ---Cccccc----------cCCcEEEEecccCHhHHHHHHHHHHhcC-CCceEEEEEecc
Confidence               344433          3455999999999999999999999988 788999999986

>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain

Probab=99.90  E-value=1e-22  Score=183.24  Aligned_cols=134  Identities=19%  Similarity=0.355  Sum_probs=112.3

Q ss_pred             EEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCCCC
Q psy5567          98 LKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPI  177 (314)
Q Consensus        98 l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (314)
                      |++++.++++++.|+|+.++.   .                                                   .++|
T Consensus         1 V~~~~~~~~~~~~i~l~~~~~---~---------------------------------------------------~~~p   26 (222)
T cd06194           1 VVSLQRLSPDVLRVRLEPDRP---L---------------------------------------------------PYLP   26 (222)
T ss_pred             CceeeecCCCEEEEEEecCCC---C---------------------------------------------------CcCC
Confidence            468899999999999997642   2                                                   6789


Q ss_pred             CcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEccccCccccCC
Q psy5567         178 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRLAYLGN  256 (314)
Q Consensus       178 GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~y~~~  256 (314)
                      |||++|+++.   ...|+||+++.+.+.+.++|+||.+         ++|.+|+||++ +++||.|.+.||+|.      
T Consensus        27 GQ~v~l~~~~---~~~r~ySi~s~~~~~~~~~~~i~~~---------~~G~~s~~l~~~~~~G~~v~i~gP~G~------   88 (222)
T cd06194          27 GQYVNLRRAG---GLARSYSPTSLPDGDNELEFHIRRK---------PNGAFSGWLGEEARPGHALRLQGPFGQ------   88 (222)
T ss_pred             CCEEEEEcCC---CCceeeecCCCCCCCCEEEEEEEec---------cCCccchHHHhccCCCCEEEEecCcCC------
Confidence            9999999853   3469999999988778999999987         78999999976 799999999999995      


Q ss_pred             cceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         257 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       257 g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                        |.+.+        ....++++|||||||||||++++++++..+. ..+++|+|++|
T Consensus        89 --~~~~~--------~~~~~~~v~iagG~Giap~~~~l~~~~~~~~-~~~v~l~~~~r  135 (222)
T cd06194          89 --AFYRP--------EYGEGPLLLVGAGTGLAPLWGIARAALRQGH-QGEIRLVHGAR  135 (222)
T ss_pred             --eeccC--------CCCCCCEEEEecCcchhhHHHHHHHHHhcCC-CccEEEEEecC
Confidence              33321        0235789999999999999999999886643 57899999986

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e

>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases

Probab=99.90  E-value=8.6e-23  Score=189.02  Aligned_cols=137  Identities=23%  Similarity=0.469  Sum_probs=113.6

Q ss_pred             EEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCCCC
Q psy5567          98 LKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPI  177 (314)
Q Consensus        98 l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (314)
                      |++++.+|+++..|+|+++.+....                                                  ..+.|
T Consensus         1 v~~i~~~t~~v~~~~l~~~~~~~~~--------------------------------------------------~~~~p   30 (253)
T cd06221           1 IVEVVDETEDIKTFTLRLEDDDEEL--------------------------------------------------FTFKP   30 (253)
T ss_pred             CceEEeccCCceEEEEEeCCCcccc--------------------------------------------------CCcCC
Confidence            5688999999999999987653110                                                  16899


Q ss_pred             CcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCccccCCc
Q psy5567         178 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNG  257 (314)
Q Consensus       178 GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g  257 (314)
                      |||+.|.++..+   .|+||+++.+.+.+.++|.||..           |.+|++|+++++||.+.++||+|.       
T Consensus        31 GQ~i~l~~~~~~---~~pySi~s~~~~~~~l~~~Ik~~-----------G~~S~~L~~l~~G~~v~i~gP~G~-------   89 (253)
T cd06221          31 GQFVMLSLPGVG---EAPISISSDPTRRGPLELTIRRV-----------GRVTEALHELKPGDTVGLRGPFGN-------   89 (253)
T ss_pred             CCEEEEEcCCCC---ccceEecCCCCCCCeEEEEEEeC-----------ChhhHHHHcCCCCCEEEEECCcCC-------
Confidence            999999986433   38999999998779999999963           899999999999999999999995       


Q ss_pred             ceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         258 EFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       258 ~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      .|.++.         ...++++||||||||||+++|++++++...+..+++|+|++|
T Consensus        90 ~f~~~~---------~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~~~~i~Li~~~r  137 (253)
T cd06221          90 GFPVEE---------MKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGAR  137 (253)
T ss_pred             Cccccc---------ccCCeEEEEccccchhHHHHHHHHHHhccccCCcEEEEEecC
Confidence            244332         135899999999999999999999998654457899999986

Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.

>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain

Probab=99.89  E-value=1.6e-22  Score=190.42  Aligned_cols=155  Identities=20%  Similarity=0.260  Sum_probs=116.4

Q ss_pred             CCceEEEEEEEEEEeC-----CCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCC
Q psy5567          90 PDVKVPLKLKEKIEIN-----HDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPES  164 (314)
Q Consensus        90 p~~~~~~~l~~~~~ls-----~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                      +.....++|+++++++     ++++.|+|+.+..   .                                          
T Consensus         5 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~---~------------------------------------------   39 (286)
T cd06208           5 PKNPLIGKVVSNTRLTGPDAPGEVCHIVIDHGGK---L------------------------------------------   39 (286)
T ss_pred             CCCCeEEEEEeceeccCCCCCcceEEEEEeCCCc---c------------------------------------------
Confidence            4567789999999999     6999999986321   2                                          


Q ss_pred             CCCcccccCCCCCCcEEEEEeeeC----C-ceeeeeeeeecCCCC----CceEEEEEEEEeecC-CCCCCCCChhchHhh
Q psy5567         165 EPPFHFAWLGLPIGQHLSLSATIN----D-EFVARAYTPVTSDEH----HGYMDLVVKVYFKNV-HPKFPDGGKMSQFLE  234 (314)
Q Consensus       165 ~~~~~~~~~~~~~GQ~v~l~~~~~----~-~~~~R~YTp~s~~~~----~g~l~l~VK~~~~~~-~~~~~~~G~~S~~L~  234 (314)
                               .+.||||++|..+..    + ....|+||+++.+.+    .+.++|+||...... .......|.+|+||+
T Consensus        40 ---------~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~  110 (286)
T cd06208          40 ---------PYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLC  110 (286)
T ss_pred             ---------cccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHh
Confidence                     689999999986521    1 124799999998743    479999999871100 000011299999999


Q ss_pred             cCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCC----CCCccEEEE
Q psy5567         235 NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP----TDNTKMSLI  310 (314)
Q Consensus       235 ~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~----~~~~~v~Li  310 (314)
                      ++++||.|.++||.|.        |.+.+        ....++++|||||||||||++|+++++.+.    ....+++|+
T Consensus       111 ~l~~Gd~v~v~gP~G~--------~~~~~--------~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~  174 (286)
T cd06208         111 DLKPGDDVQITGPVGK--------TMLLP--------EDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLF  174 (286)
T ss_pred             hCCCCCEEEEEeecCC--------cccCC--------CCCCCCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEE
Confidence            9999999999999995        33332        012468999999999999999999988651    224689999


Q ss_pred             EEeC
Q psy5567         311 FANQ  314 (314)
Q Consensus       311 ~~~r  314 (314)
                      |++|
T Consensus       175 ~g~r  178 (286)
T cd06208         175 FGVP  178 (286)
T ss_pred             EEec
Confidence            9987

Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then

>PLN03116 ferredoxin--NADP+ reductase; Provisional

Probab=99.89  E-value=2e-22  Score=192.09  Aligned_cols=160  Identities=18%  Similarity=0.206  Sum_probs=120.1

Q ss_pred             cccCCCceEEEEEEEEEEeC-----CCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeecc
Q psy5567          86 TLVDPDVKVPLKLKEKIEIN-----HDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVS  160 (314)
Q Consensus        86 ~~l~p~~~~~~~l~~~~~ls-----~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (314)
                      ++--+....+++|++++.++     ++++.|+|+++..   .                                      
T Consensus        17 ~~~~~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~---~--------------------------------------   55 (307)
T PLN03116         17 NLYKPKAPYTATIVSVERIVGPKAPGETCHIVIDHGGN---V--------------------------------------   55 (307)
T ss_pred             eeccCCCCEEEEEEeeEEcccCCCCCceEEEEEecCCC---C--------------------------------------
Confidence            33335667799999999999     8999999997632   1                                      


Q ss_pred             CCCCCCCcccccCCCCCCcEEEEEeee-----CCc-eeeeeeeeecCCCC---C-ceEEEEEEEEeecC---CCCCC-CC
Q psy5567         161 APESEPPFHFAWLGLPIGQHLSLSATI-----NDE-FVARAYTPVTSDEH---H-GYMDLVVKVYFKNV---HPKFP-DG  226 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~~~GQ~v~l~~~~-----~~~-~~~R~YTp~s~~~~---~-g~l~l~VK~~~~~~---~~~~~-~~  226 (314)
                                   .|.||||+.|.++.     ++. ...|+||++|.+.+   . .+++|+||+..+.+   +...+ ++
T Consensus        56 -------------~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~  122 (307)
T PLN03116         56 -------------PYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKK  122 (307)
T ss_pred             -------------ceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccC
Confidence                         67899999998752     122 24799999998843   2 37999999763211   11111 57


Q ss_pred             ChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCC----
Q psy5567         227 GKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT----  302 (314)
Q Consensus       227 G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~----  302 (314)
                      |.+|+||+++++||.|.++||.|.        |.+.+       .....++++|||||||||||++|+++++..+.    
T Consensus       123 G~~S~~L~~l~~Gd~v~v~gP~G~--------f~~~~-------~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~  187 (307)
T PLN03116        123 GVCSNFLCDAKPGDKVQITGPSGK--------VMLLP-------EEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFK  187 (307)
T ss_pred             cchhhhHhhCCCCCEEEEEEecCC--------ceeCC-------CCCCCCcEEEEecCccHHHHHHHHHHHHhhcccccc
Confidence            999999988999999999999995        44422       00134789999999999999999999876432    


Q ss_pred             CCccEEEEEEeC
Q psy5567         303 DNTKMSLIFANQ  314 (314)
Q Consensus       303 ~~~~v~Li~~~r  314 (314)
                      ...+++|+||+|
T Consensus       188 ~~~~v~L~~g~R  199 (307)
T PLN03116        188 FGGLAWLFLGVA  199 (307)
T ss_pred             CCCcEEEEEecC
Confidence            135799999987

>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed

Probab=99.89  E-value=2.4e-22  Score=185.35  Aligned_cols=136  Identities=17%  Similarity=0.365  Sum_probs=116.0

Q ss_pred             ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccc
Q psy5567          92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFA  171 (314)
Q Consensus        92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (314)
                      ++.+++|++++++++|++.|+|+.+.   ..                                                 
T Consensus         3 ~~~~~~V~~~~~~t~d~~~l~l~~~~---~~-------------------------------------------------   30 (250)
T PRK00054          3 KPENMKIVENKEIAPNIYTLVLDGEK---VF-------------------------------------------------   30 (250)
T ss_pred             CceEEEEEEEEEecCCeEEEEEeCcc---cc-------------------------------------------------
Confidence            46789999999999999999999541   11                                                 


Q ss_pred             cCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCc
Q psy5567         172 WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRL  251 (314)
Q Consensus       172 ~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~  251 (314)
                        .+.||||+.|.++..+....|+||+++.+  .++++|+||..           |.+|++|+++++||.|.+.||+|. 
T Consensus        31 --~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~--~~~l~l~Vk~~-----------G~~t~~l~~l~~G~~v~i~gP~G~-   94 (250)
T PRK00054         31 --DMKPGQFVMVWVPGVEPLLERPISISDID--KNEITILYRKV-----------GEGTKKLSKLKEGDELDIRGPLGN-   94 (250)
T ss_pred             --CCCCCcEEEEEeCCCCCcCceeeEEeeeC--CCEEEEEEEEc-----------ChHHHHHhcCCCCCEEEEEcccCC-
Confidence              68999999999876555568999999988  57999999964           899999999999999999999995 


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         252 AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       252 ~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                            .|.++.          ..++++||||||||||++++++++..++   .+++|+|++|
T Consensus        95 ------~f~l~~----------~~~~~vlIagG~GiaP~~s~l~~~~~~~---~~v~l~~~~r  138 (250)
T PRK00054         95 ------GFDLEE----------IGGKVLLVGGGIGVAPLYELAKELKKKG---VEVTTVLGAR  138 (250)
T ss_pred             ------CCCCCC----------CCCeEEEEeccccHHHHHHHHHHHHHcC---CcEEEEEEcC
Confidence                  355543          3579999999999999999999998764   4799999986

>PRK08221 anaerobic sulfite reductase subunit B; Provisional

Probab=99.89  E-value=1.3e-22  Score=189.23  Aligned_cols=134  Identities=25%  Similarity=0.422  Sum_probs=112.4

Q ss_pred             eEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccccc
Q psy5567          93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAW  172 (314)
Q Consensus        93 ~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (314)
                      ..+++|++++++|++++.|+|+.+     .                                                  
T Consensus         7 ~~~~~v~~i~~~t~~~~~~~l~~~-----~--------------------------------------------------   31 (263)
T PRK08221          7 PAAYKILDITKHTDIEYTFRVEVD-----G--------------------------------------------------   31 (263)
T ss_pred             CccEEEEEEeccCCcEEEEEecCC-----C--------------------------------------------------
Confidence            456999999999999999999854     1                                                  


Q ss_pred             CCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCcc
Q psy5567         173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLA  252 (314)
Q Consensus       173 ~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~  252 (314)
                       .++||||+.|+++..+   .|+||+++.+  ++.++|+||..           |.+|++|+++++||.|.++||+|.  
T Consensus        32 -~~~pGQfi~l~~~~~~---~~pySi~~~~--~~~~~~~Ik~~-----------G~~S~~L~~l~~Gd~v~v~gP~G~--   92 (263)
T PRK08221         32 -PVKPGQFFEVSLPKVG---EAPISVSDYG--DGYIDLTIRRV-----------GKVTDEIFNLKEGDKLFLRGPYGN--   92 (263)
T ss_pred             -CCCCCceEEEEeCCCC---cceeeccCCC--CCEEEEEEEeC-----------CchhhHHHhCCCCCEEEEECCCCC--
Confidence             4689999999986433   3899998764  57899999964           999999999999999999999995  


Q ss_pred             ccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         253 YLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       253 y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                           .|.++.         ...++++|||||||||||++++++++.++.+.++++|+|++|
T Consensus        93 -----~f~~~~---------~~~~~~llIAgGtGItP~~sil~~~~~~~~~~~~v~L~~g~r  140 (263)
T PRK08221         93 -----GFPVDT---------YKGKELIVVAGGTGVAPVKGLMRYFYENPQEIKSLDLILGFK  140 (263)
T ss_pred             -----CcccCc---------cCCccEEEEcccccHHHHHHHHHHHHhCcccCceEEEEEecC
Confidence                 355543         135789999999999999999999987654457999999987

>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

Probab=99.89  E-value=1.9e-22  Score=185.96  Aligned_cols=133  Identities=25%  Similarity=0.451  Sum_probs=112.5

Q ss_pred             EEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCCCC
Q psy5567          98 LKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPI  177 (314)
Q Consensus        98 l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (314)
                      |++++.++++++.|+|+.++.  ..                                                   .+.|
T Consensus         1 V~~~~~~t~~v~~l~l~~~~~--~~---------------------------------------------------~~~p   27 (246)
T cd06218           1 VLSNREIADDIYRLVLEAPEI--AA---------------------------------------------------AAKP   27 (246)
T ss_pred             CcceeEecCCeEEEEEeCcch--hc---------------------------------------------------cCCC
Confidence            468899999999999997752  12                                                   6899


Q ss_pred             CcEEEEEeee-CCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCccccCC
Q psy5567         178 GQHLSLSATI-NDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGN  256 (314)
Q Consensus       178 GQ~v~l~~~~-~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~  256 (314)
                      |||+.|.++. ++....|+||+++.+.+++.++|+||.+           |.+|+||+++++||+|.++||+|.      
T Consensus        28 GQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~-----------G~~s~~l~~l~~Gd~v~i~gP~G~------   90 (246)
T cd06218          28 GQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKVV-----------GKGTRLLSELKAGDELDVLGPLGN------   90 (246)
T ss_pred             CcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEEE-----------CcchHHHhcCCCCCEEEEEecCCC------
Confidence            9999999975 2345679999999887778999999975           788999999999999999999995      


Q ss_pred             cceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         257 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       257 g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                       .|.+++          ..++++||||||||||+++|++++..++   .+++|+|++|
T Consensus        91 -~~~~~~----------~~~~~vlIagGtGIaP~~s~l~~~~~~~---~~v~l~~~~r  134 (246)
T cd06218          91 -GFDLPD----------DDGKVLLVGGGIGIAPLLFLAKQLAERG---IKVTVLLGFR  134 (246)
T ss_pred             -CcCCCC----------CCCcEEEEecccCHHHHHHHHHHHHhcC---CceEEEEEcc
Confidence             344432          3689999999999999999999998743   5899999986

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein

Probab=99.89  E-value=3.7e-22  Score=197.78  Aligned_cols=164  Identities=20%  Similarity=0.301  Sum_probs=127.3

Q ss_pred             ccccccccCCCceEEEEEEEEEEeC-----CCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceee
Q psy5567          81 KKELKTLVDPDVKVPLKLKEKIEIN-----HDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWC  155 (314)
Q Consensus        81 ~~~~~~~l~p~~~~~~~l~~~~~ls-----~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (314)
                      .++...+..+....+++|++++.++     ++++.|+|+.++..  .                                 
T Consensus       130 ~~~~~~~~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~--~---------------------------------  174 (411)
T TIGR03224       130 AHPYVNLYGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHP--F---------------------------------  174 (411)
T ss_pred             cCCccccccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCc--C---------------------------------
Confidence            4556777888888999999999995     49999999876421  1                                 


Q ss_pred             eeeccCCCCCCCcccccCCCCCCcEEEEEeee---CCc-eeeeeeeeecCCCCC----ceEEEEEEEEeecCCCCCCCCC
Q psy5567         156 SRVVSAPESEPPFHFAWLGLPIGQHLSLSATI---NDE-FVARAYTPVTSDEHH----GYMDLVVKVYFKNVHPKFPDGG  227 (314)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~---~~~-~~~R~YTp~s~~~~~----g~l~l~VK~~~~~~~~~~~~~G  227 (314)
                                        .+.||||++|.++.   ++. ...|+||++|.++..    +.++|+||++.. .+...+.+|
T Consensus       175 ------------------~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~-~~~g~~~~G  235 (411)
T TIGR03224       175 ------------------PVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVKRVTT-DHQGNAVRG  235 (411)
T ss_pred             ------------------CccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEEEEEe-cCCCCcCcc
Confidence                              67999999998753   222 357999999986421    479999998731 223334579


Q ss_pred             hhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhC--CCCCc
Q psy5567         228 KMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD--PTDNT  305 (314)
Q Consensus       228 ~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~--~~~~~  305 (314)
                      .+|+||+++++||+|.++||+|+       .|.++.         ...++++|||||||||||++|++++...  ..+..
T Consensus       236 ~~S~~L~~lk~Gd~v~v~GP~G~-------~f~lp~---------~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~~~~  299 (411)
T TIGR03224       236 VASNYLCDLKKGDKVQVIGPFGS-------TFLMPN---------HPESSIMMICTGTGSAPMRAMTERRRRRRDHGEGG  299 (411)
T ss_pred             cchhHHhcCCCcCEEEEEeccCC-------cccCCC---------CCCCCEEEEecccCcHHHHHHHHHHHHHhhcCCCC
Confidence            99999999999999999999996       354443         1247899999999999999999998752  11357


Q ss_pred             cEEEEEEeC
Q psy5567         306 KMSLIFANQ  314 (314)
Q Consensus       306 ~v~Li~~~r  314 (314)
                      +++|+||+|
T Consensus       300 ~v~L~~G~R  308 (411)
T TIGR03224       300 KLMLFFGAR  308 (411)
T ss_pred             CEEEEEecC
Confidence            899999987

Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.

>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family

Probab=99.89  E-value=1.8e-22  Score=184.60  Aligned_cols=135  Identities=16%  Similarity=0.224  Sum_probs=113.3

Q ss_pred             EEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCCCC
Q psy5567          98 LKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPI  177 (314)
Q Consensus        98 l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (314)
                      |++++++|+++++|+|+.++.....                                                   .+.|
T Consensus         1 V~~~~~~s~~~~~l~l~~~~~~~~~---------------------------------------------------~~~p   29 (235)
T cd06193           1 VVRVERLTPHMRRITLGGPDLAGFP---------------------------------------------------SDGP   29 (235)
T ss_pred             CceeEecCCCEEEEEEecCccccCC---------------------------------------------------CCCC
Confidence            5789999999999999987542111                                                   6789


Q ss_pred             CcEEEEEeeeCC-------------------ceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCC-ChhchHhhcCC
Q psy5567         178 GQHLSLSATIND-------------------EFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDG-GKMSQFLENMK  237 (314)
Q Consensus       178 GQ~v~l~~~~~~-------------------~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~-G~~S~~L~~l~  237 (314)
                      |||++|.++.++                   ....|+||+++.+.+.++++|.||.+         ++ |.+|+||++++
T Consensus        30 GQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l~~~v~~~---------~~~G~~s~~l~~l~  100 (235)
T cd06193          30 DQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELDIDFVLH---------GDEGPASRWAASAQ  100 (235)
T ss_pred             CceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEEEEEEEeC---------CCCCchHHHHhhCC
Confidence            999999987643                   46789999999887789999999987         55 99999999999


Q ss_pred             CCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         238 VGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       238 ~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      +||+|.+.||.|.        |.+.+          ..++++||||||||||+++|++++...    .+++++|++|
T Consensus       101 ~Gd~v~v~gP~G~--------~~~~~----------~~~~~vlia~GtGi~p~~~il~~~~~~----~~~~~~~~~~  155 (235)
T cd06193         101 PGDTLGIAGPGGS--------FLPPP----------DADWYLLAGDETALPAIAAILEELPAD----ARGTALIEVP  155 (235)
T ss_pred             CCCEEEEECCCCC--------CCCCC----------CcceEEEEeccchHHHHHHHHHhCCCC----CeEEEEEEEC
Confidence            9999999999995        43332          357899999999999999999988653    5899999875

Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy

>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster

Probab=99.89  E-value=3.6e-22  Score=178.09  Aligned_cols=132  Identities=23%  Similarity=0.398  Sum_probs=110.1

Q ss_pred             EEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCCCCC
Q psy5567          99 KEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIG  178 (314)
Q Consensus        99 ~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  178 (314)
                      ++++.+++++++|+|+.+......                                                   .+.||
T Consensus         1 ~~~~~~~~~~~~~~l~~~~~~~~~---------------------------------------------------~~~pG   29 (211)
T cd06185           1 VRIRDEAPDIRSFELEAPDGAPLP---------------------------------------------------AFEPG   29 (211)
T ss_pred             CceEEcCCCeEEEEEEeCCCCcCC---------------------------------------------------CCCCC
Confidence            367899999999999987664322                                                   68999


Q ss_pred             cEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCC-hhchHhh-cCCCCCeEEEEccccCccccCC
Q psy5567         179 QHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGG-KMSQFLE-NMKVGEPINVSGPRGRLAYLGN  256 (314)
Q Consensus       179 Q~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G-~~S~~L~-~l~~Gd~v~v~GP~G~~~y~~~  256 (314)
                      ||+.|+++.   ...|+||+++.+.+.+.++|+||.+         ++| .+|.||+ .+++||+|.++||.|       
T Consensus        30 Q~~~l~~~~---~~~r~ySi~s~~~~~~~l~~~v~~~---------~~g~~~s~~l~~~~~~Gd~v~i~gP~g-------   90 (211)
T cd06185          30 AHIDVHLPN---GLVRQYSLCGDPADRDRYRIAVLRE---------PASRGGSRYMHELLRVGDELEVSAPRN-------   90 (211)
T ss_pred             ceEEEEcCC---CCceeeeccCCCCCCCEEEEEEEec---------cCCCchHHHHHhcCCCCCEEEEcCCcc-------
Confidence            999999853   4579999999988779999999987         444 5899995 689999999999988       


Q ss_pred             cceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         257 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       257 g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                       .|.+.+          ..++++||||||||||++++++++.+.+   .+++|+|++|
T Consensus        91 -~f~~~~----------~~~~~v~ia~GtGiap~~~il~~~~~~~---~~v~l~~~~r  134 (211)
T cd06185          91 -LFPLDE----------AARRHLLIAGGIGITPILSMARALAARG---ADFELHYAGR  134 (211)
T ss_pred             -CCcCCC----------CCCcEEEEeccchHhHHHHHHHHHHhCC---CCEEEEEEeC
Confidence             455543          2578999999999999999999988743   5799999986

PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.

>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

Probab=99.88  E-value=5.5e-22  Score=178.00  Aligned_cols=111  Identities=25%  Similarity=0.437  Sum_probs=97.0

Q ss_pred             CCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccccCcc
Q psy5567         174 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRLA  252 (314)
Q Consensus       174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~  252 (314)
                      .+.||||+.|.++.++....|+||+++.+.+.+.++|+||..           |.+|++|. ++++||.|.++||+|.  
T Consensus        22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~l~l~vk~~-----------G~~t~~l~~~l~~G~~v~i~gP~G~--   88 (216)
T cd06198          22 GHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKAL-----------GDYTRRLAERLKPGTRVTVEGPYGR--   88 (216)
T ss_pred             CcCCCCEEEEEeCCCCCCCCCCcEEecCCCCCCeEEEEEEeC-----------ChHHHHHHHhCCCCCEEEEECCCCC--
Confidence            689999999999765566789999999988878999999964           88999997 9999999999999994  


Q ss_pred             ccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         253 YLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       253 y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                            |.++.          ..++++||||||||||++++++++..++. ..+++|+|++|
T Consensus        89 ------~~~~~----------~~~~~vlia~GtGiap~~~~l~~~~~~~~-~~~v~l~~~~r  133 (216)
T cd06198          89 ------FTFDD----------RRARQIWIAGGIGITPFLALLEALAARGD-ARPVTLFYCVR  133 (216)
T ss_pred             ------Ccccc----------cCceEEEEccccCHHHHHHHHHHHHhcCC-CceEEEEEEEC
Confidence                  55443          26899999999999999999999987653 57899999986

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed

Probab=99.88  E-value=7.5e-22  Score=185.79  Aligned_cols=132  Identities=23%  Similarity=0.377  Sum_probs=110.9

Q ss_pred             EEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCC
Q psy5567          96 LKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGL  175 (314)
Q Consensus        96 ~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (314)
                      ++|+++++++++++.|+|+.|+..  .                                                   .+
T Consensus         2 ~~I~~~~~~t~~~~~l~l~~~~~~--~---------------------------------------------------~~   28 (281)
T PRK06222          2 YKILEKEELAPNVFLMEIEAPRVA--K---------------------------------------------------KA   28 (281)
T ss_pred             cEEEEEEEecCCEEEEEEeCchhh--c---------------------------------------------------cC
Confidence            579999999999999999876421  1                                                   57


Q ss_pred             CCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeE-EEEccccCcccc
Q psy5567         176 PIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPI-NVSGPRGRLAYL  254 (314)
Q Consensus       176 ~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v-~v~GP~G~~~y~  254 (314)
                      +||||++|+++..+  ..|+||+++.+.+++.++|+||..           |.+|++|+++++||.| .++||+|++   
T Consensus        29 ~pGQfv~l~~~~~~--~~rpySias~~~~~~~i~l~vk~~-----------G~~T~~L~~l~~Gd~v~~i~GP~G~~---   92 (281)
T PRK06222         29 KPGQFVIVRIDEKG--ERIPLTIADYDREKGTITIVFQAV-----------GKSTRKLAELKEGDSILDVVGPLGKP---   92 (281)
T ss_pred             CCCeEEEEEeCCCC--CceeeEeeEEcCCCCEEEEEEEeC-----------CcHHHHHhcCCCCCEEeeEEcCCCCC---
Confidence            89999999985333  468999999887779999999964           9999999999999999 799999962   


Q ss_pred             CCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         255 GNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       255 ~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                          |.+ +          ..++++|||||+||||++++++++.+++   .+++|+|++|
T Consensus        93 ----~~~-~----------~~~~~llIaGGiGiaPl~~l~~~l~~~~---~~v~l~~g~r  134 (281)
T PRK06222         93 ----SEI-E----------KFGTVVCVGGGVGIAPVYPIAKALKEAG---NKVITIIGAR  134 (281)
T ss_pred             ----ccc-C----------CCCeEEEEeCcCcHHHHHHHHHHHHHCC---CeEEEEEecC
Confidence                322 1          2478999999999999999999988765   3799999986

>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=99.88  E-value=7.1e-22  Score=182.24  Aligned_cols=132  Identities=23%  Similarity=0.384  Sum_probs=110.7

Q ss_pred             EEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCC
Q psy5567          96 LKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGL  175 (314)
Q Consensus        96 ~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (314)
                      ++|++++++++|++.|+|+.|+..  .                                                   .+
T Consensus         1 ~~v~~~~~~t~d~~~~~l~~~~~~--~---------------------------------------------------~~   27 (248)
T cd06219           1 YKILEKEELAPNVKLFEIEAPLIA--K---------------------------------------------------KA   27 (248)
T ss_pred             CEEEEEEEeCCCeEEEEEEChhhh--c---------------------------------------------------cC
Confidence            478999999999999999976421  1                                                   67


Q ss_pred             CCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeE-EEEccccCcccc
Q psy5567         176 PIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPI-NVSGPRGRLAYL  254 (314)
Q Consensus       176 ~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v-~v~GP~G~~~y~  254 (314)
                      +||||++|+++..+  ..|+||+++.+.+.++++|+||..           |.+|.+|.++++||.+ .++||+|.    
T Consensus        28 ~pGQf~~l~~~~~~--~~~pySi~s~~~~~~~~~~~vk~~-----------G~~t~~l~~l~~G~~v~~i~gP~G~----   90 (248)
T cd06219          28 KPGQFVIVRADEKG--ERIPLTIADWDPEKGTITIVVQVV-----------GKSTRELATLEEGDKIHDVVGPLGK----   90 (248)
T ss_pred             CCCcEEEEEcCCCC--CccceEeEEEcCCCCEEEEEEEeC-----------CchHHHHHhcCCCCEeeeeecCCCC----
Confidence            99999999985333  468999999887778999999963           8899999999999999 79999995    


Q ss_pred             CCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         255 GNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       255 ~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                          |...+          ..++++|||||||||||+++++++.+.+   .+++|+|++|
T Consensus        91 ----~~~~~----------~~~~~lliagG~GiaP~~~~l~~~~~~~---~~v~l~~~~r  133 (248)
T cd06219          91 ----PSEIE----------NYGTVVFVGGGVGIAPIYPIAKALKEAG---NRVITIIGAR  133 (248)
T ss_pred             ----CeecC----------CCCeEEEEeCcccHHHHHHHHHHHHHcC---CeEEEEEEcC
Confidence                32222          2578999999999999999999988764   4799999986

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,

>TIGR02911 sulfite_red_B sulfite reductase, subunit B

Probab=99.88  E-value=1.2e-21  Score=182.49  Aligned_cols=133  Identities=24%  Similarity=0.409  Sum_probs=110.7

Q ss_pred             EEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccC
Q psy5567          94 VPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWL  173 (314)
Q Consensus        94 ~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (314)
                      ..++|+++.+++++++.|+|+.+     .                                                   
T Consensus         6 ~~~~v~~~~~~t~~~~~~~~~~~-----~---------------------------------------------------   29 (261)
T TIGR02911         6 FKSEILEIIKHTDIEYTFRMSYD-----G---------------------------------------------------   29 (261)
T ss_pred             ceEEEEEEeeccCCEEEEEcCCC-----C---------------------------------------------------
Confidence            36899999999999999888643     1                                                   


Q ss_pred             CCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCccc
Q psy5567         174 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAY  253 (314)
Q Consensus       174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y  253 (314)
                      .+.||||+.|+++..+   .|+||+++.  +.+.++|+||..           |.+|.+|+++++||.|.++||+|.   
T Consensus        30 ~~~pGQ~v~l~~~~~~---~~pySi~~~--~~~~l~~~Vk~~-----------G~~S~~L~~l~~Gd~v~i~gP~G~---   90 (261)
T TIGR02911        30 PVKPGQFFEVSLPKYG---EAPISVSGI--GEGYIDLTIRRV-----------GKVTDEVFTLKEGDNLFLRGPYGN---   90 (261)
T ss_pred             CCCCCcEEEEEecCCC---ccceecCCC--CCCeEEEEEEeC-----------chhhHHHHcCCCCCEEEEecCCCC---
Confidence            5789999999986432   489999874  358899999964           999999999999999999999995   


Q ss_pred             cCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         254 LGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       254 ~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                          .|.+++         ...++++|||||||||||++|+++++++..+.++++|+|++|
T Consensus        91 ----~f~~~~---------~~~~~~llIAgGtGIaP~~sil~~l~~~~~~~~~v~L~~~~r  138 (261)
T TIGR02911        91 ----GFDVDN---------YKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFK  138 (261)
T ss_pred             ----CcccCc---------cCCceEEEEecccCcHHHHHHHHHHHhCcccCceEEEEEecC
Confidence                255543         235799999999999999999999987654457899999986

Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.

>PLN03115 ferredoxin--NADP(+) reductase; Provisional

Probab=99.87  E-value=5.3e-21  Score=187.16  Aligned_cols=160  Identities=20%  Similarity=0.225  Sum_probs=120.2

Q ss_pred             ccccCCCceEEEEEEEEEEeCC-----CEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeec
Q psy5567          85 KTLVDPDVKVPLKLKEKIEINH-----DTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVV  159 (314)
Q Consensus        85 ~~~l~p~~~~~~~l~~~~~ls~-----~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (314)
                      ..+..|.....+++++.+.++.     +++.|+|+.+..   .                                     
T Consensus        82 ~n~~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~~---~-------------------------------------  121 (367)
T PLN03115         82 VNKFRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTEGE---I-------------------------------------  121 (367)
T ss_pred             eEeeccCCCeEEEEEeecccccCCCCCceEEEEEcCCCC---C-------------------------------------
Confidence            3455567788899999999987     889998875432   2                                     


Q ss_pred             cCCCCCCCcccccCCCCCCcEEEEEeee---CCce-eeeeeeeecCCC----CCceEEEEEEEEeecCCCCCCCCChhch
Q psy5567         160 SAPESEPPFHFAWLGLPIGQHLSLSATI---NDEF-VARAYTPVTSDE----HHGYMDLVVKVYFKNVHPKFPDGGKMSQ  231 (314)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~GQ~v~l~~~~---~~~~-~~R~YTp~s~~~----~~g~l~l~VK~~~~~~~~~~~~~G~~S~  231 (314)
                                    .+.+|||+.|..+.   ++.. ..|+||++|.+.    +.++++|+||+.....+...+.+|.+|+
T Consensus       122 --------------~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~  187 (367)
T PLN03115        122 --------------PYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSN  187 (367)
T ss_pred             --------------CcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHh
Confidence                          68999999998753   2333 479999999873    2578999999742211222335799999


Q ss_pred             HhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCC-C---CccE
Q psy5567         232 FLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT-D---NTKM  307 (314)
Q Consensus       232 ~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~-~---~~~v  307 (314)
                      ||++|++||.|.++||.|++       |.++.         ...++++|||||||||||++|+++++.... +   ..++
T Consensus       188 ~L~~Lk~Gd~V~v~GP~G~~-------fllp~---------~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v  251 (367)
T PLN03115        188 FLCDLKPGAEVKITGPVGKE-------MLMPK---------DPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLA  251 (367)
T ss_pred             hHhhCCCcCEEEEEeecCCc-------eeCCc---------CCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcE
Confidence            99999999999999999962       33322         134689999999999999999998754321 1   3579


Q ss_pred             EEEEEeC
Q psy5567         308 SLIFANQ  314 (314)
Q Consensus       308 ~Li~~~r  314 (314)
                      +|+||+|
T Consensus       252 ~Lf~G~R  258 (367)
T PLN03115        252 WLFLGVP  258 (367)
T ss_pred             EEEEccC
Confidence            9999987

>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=99.87  E-value=3.9e-21  Score=175.43  Aligned_cols=123  Identities=22%  Similarity=0.415  Sum_probs=105.3

Q ss_pred             EEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCC
Q psy5567          96 LKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGL  175 (314)
Q Consensus        96 ~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (314)
                      ++|++++++|+|++.|+|+.+     .                                                   .+
T Consensus         1 ~~v~~~~~~t~~~~~~~l~~~-----~---------------------------------------------------~~   24 (233)
T cd06220           1 VTIKEVIDETPTVKTFVFDWD-----F---------------------------------------------------DF   24 (233)
T ss_pred             CEEEEEEEEcCCEEEEEEecC-----C---------------------------------------------------CC
Confidence            378999999999999999863     1                                                   57


Q ss_pred             CCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCccccC
Q psy5567         176 PIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLG  255 (314)
Q Consensus       176 ~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~  255 (314)
                      +||||+.|.++..   ..|+||+++.+   +.++|+||..           |.+|+||+++++||.+.++||+|.     
T Consensus        25 ~pGQ~v~l~~~~~---~~~~~Si~s~~---~~l~~~v~~~-----------G~~s~~L~~l~~Gd~v~i~gP~G~-----   82 (233)
T cd06220          25 KPGQFVMVWVPGV---DEIPMSLSYID---GPNSITVKKV-----------GEATSALHDLKEGDKLGIRGPYGN-----   82 (233)
T ss_pred             CCCceEEEEeCCC---CcceeEEecCC---CeEEEEEEec-----------ChHHHHHHhcCCCCEEEEECcCCC-----
Confidence            8999999998532   24899999987   7899999964           899999999999999999999995     


Q ss_pred             CcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         256 NGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       256 ~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                        .|.++            .++++||||||||||+++|++++..+    ++++|+|++|
T Consensus        83 --~f~~~------------~~~~vliAgGtGitP~~sil~~~~~~----~~i~l~~~~r  123 (233)
T cd06220          83 --GFELV------------GGKVLLIGGGIGIAPLAPLAERLKKA----ADVTVLLGAR  123 (233)
T ss_pred             --CccCC------------CCeEEEEecCcChHHHHHHHHHHHhc----CCEEEEEecC
Confidence              24332            46899999999999999999999875    5799999986

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain

Probab=99.86  E-value=4.7e-21  Score=152.41  Aligned_cols=99  Identities=33%  Similarity=0.718  Sum_probs=89.4

Q ss_pred             EEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCC
Q psy5567          95 PLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLG  174 (314)
Q Consensus        95 ~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (314)
                      +++|+++++++++++.|+|+++++....                                                   .
T Consensus         1 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~---------------------------------------------------~   29 (99)
T PF00970_consen    1 KAKVVEIEELSPDVKIFRFKLPDPDQKL---------------------------------------------------D   29 (99)
T ss_dssp             EEEEEEEEEESSSEEEEEEEESSTTTT----------------------------------------------------S
T ss_pred             CEEEEEEEEeCCCeEEEEEEECCCCccc---------------------------------------------------c
Confidence            5899999999999999999998765333                                                   7


Q ss_pred             CCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCccc
Q psy5567         175 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAY  253 (314)
Q Consensus       175 ~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y  253 (314)
                      +.||||+.|+++.++....|+|||++.+.+.+.++|+||++         ++|.+|+||++|++||.|.++||+|+|.|
T Consensus        30 ~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~~~~~~~~ik~~---------~~G~~S~~L~~l~~Gd~v~i~gP~G~f~y   99 (99)
T PF00970_consen   30 FKPGQFVSVRVPINGKQVSRPYSPASSPDDKGYLEFAIKRY---------PNGRVSRYLHQLKPGDEVEIRGPYGNFTY   99 (99)
T ss_dssp             STTT-EEEEEEEETTEEEEEEEEBCSSTTSSSEEEEEEEEC---------TTSHHHHHHHTSCTTSEEEEEEEESSEEE
T ss_pred             cCcceEEEEEEccCCcceecceeEeeecCCCCcEEEEEEec---------cCCHHHHHHHhCCCCCEEEEEEcccccCC
Confidence            89999999999988888999999999999999999999998         89999999999999999999999997655

To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....

>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=99.86  E-value=5.2e-21  Score=179.14  Aligned_cols=122  Identities=21%  Similarity=0.319  Sum_probs=97.2

Q ss_pred             CCCCCcEEEEEeeeCCceeeeeeeeecCCCC-CceEEEEEEEEeecC-CCCCCCCChhchHhhcCCCCCeEEEEccccCc
Q psy5567         174 GLPIGQHLSLSATINDEFVARAYTPVTSDEH-HGYMDLVVKVYFKNV-HPKFPDGGKMSQFLENMKVGEPINVSGPRGRL  251 (314)
Q Consensus       174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~-~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~  251 (314)
                      .+.||||+.|.++  +....|+||+++.+++ .+.++|.||....+. |++. ..|.+|++|+++++||.|.++||.|. 
T Consensus        31 ~~~pGQ~v~l~~~--~~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~-~~G~~S~~L~~lk~Gd~v~v~~p~G~-  106 (267)
T cd06182          31 KYQPGDHLGVIPP--NPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRI-RKGVCSNFLAGLQLGAKVTVFIRPAP-  106 (267)
T ss_pred             ccCCCCEEEEecC--CCCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCe-eccchhHHHhhCCCCCEEEEEEecCC-
Confidence            6899999999974  4556899999999864 689999999862111 1222 34999999999999999999999993 


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhC---CCCCccEEEEEEeC
Q psy5567         252 AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD---PTDNTKMSLIFANQ  314 (314)
Q Consensus       252 ~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~---~~~~~~v~Li~~~r  314 (314)
                            .|.++.         ...++++|||||||||||++|+++++..   ..+..+++|+|++|
T Consensus       107 ------~f~l~~---------~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r  157 (267)
T cd06182         107 ------SFRLPK---------DPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCR  157 (267)
T ss_pred             ------cccCCC---------CCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCC
Confidence                  455544         1357899999999999999999999872   22357899999986

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t

>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E

Probab=99.85  E-value=1.5e-20  Score=173.38  Aligned_cols=115  Identities=17%  Similarity=0.290  Sum_probs=91.0

Q ss_pred             CCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEccccCcc
Q psy5567         174 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRLA  252 (314)
Q Consensus       174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~  252 (314)
                      .|.||||++|..+  +....|+||++|.+. .+.++|+||.+..   ++ ...|.+|+||++ +++||.|.++||.|.  
T Consensus        31 ~f~pGQ~v~l~~~--~~~~~R~YSIas~p~-~~~l~l~Vk~~~~---~~-~~~G~~S~~L~~~~~~Gd~v~i~gp~gg--  101 (245)
T cd06200          31 QWQAGDIAEIGPR--HPLPHREYSIASLPA-DGALELLVRQVRH---AD-GGLGLGSGWLTRHAPIGASVALRLRENP--  101 (245)
T ss_pred             CccCCcEEEecCC--CCCCCcceEeccCCC-CCEEEEEEEEecc---CC-CCCeeechhhhhCCCCCCEEEEEecCCC--
Confidence            6899999999974  235679999999985 4789999998710   00 011889999965 699999999998763  


Q ss_pred             ccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         253 YLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       253 y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                           .|.++.          ..++++|||||||||||++|++++..++  ..+++|+|++|
T Consensus       102 -----~F~~~~----------~~~~~vlIAgGtGIaP~~s~l~~~~~~~--~~~~~l~~g~r  146 (245)
T cd06200         102 -----GFHLPD----------DGRPLILIGNGTGLAGLRSHLRARARAG--RHRNWLLFGER  146 (245)
T ss_pred             -----cccCCC----------CCCCEEEEecCcChHHHHHHHHHHHhcc--CCCeEEEEecC
Confidence                 565533          3478999999999999999999998765  35799999986

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD

>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide

Probab=99.83  E-value=7.1e-20  Score=163.18  Aligned_cols=114  Identities=22%  Similarity=0.382  Sum_probs=94.6

Q ss_pred             CCCCCcEEEEEeeeC-CceeeeeeeeecCCCC-CceEEEEEEEEeecCCCCCCCCChhchHhhcCC------CCCeEEEE
Q psy5567         174 GLPIGQHLSLSATIN-DEFVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMK------VGEPINVS  245 (314)
Q Consensus       174 ~~~~GQ~v~l~~~~~-~~~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~------~Gd~v~v~  245 (314)
                      .+.||||+.|.++.. +....|+||+++.+.+ .+.++|+||..          +|..++.+..++      .|+.+.+.
T Consensus        24 ~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~----------~G~~t~~~~~~~~~~~~~~~~~v~v~   93 (210)
T cd06186          24 KWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAK----------KGFTTRLLRKALKSPGGGVSLKVLVE   93 (210)
T ss_pred             ccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEec----------CChHHHHHHHHHhCcCCCceeEEEEE
Confidence            678999999999765 5567899999999876 68999999975          488888878776      89999999


Q ss_pred             ccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCC---CCccEEEEEEeC
Q psy5567         246 GPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT---DNTKMSLIFANQ  314 (314)
Q Consensus       246 GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~---~~~~v~Li~~~r  314 (314)
                      ||+|.        +....         ..+++++||||||||||++++++++..+..   ...+++|+|++|
T Consensus        94 GP~G~--------~~~~~---------~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r  148 (210)
T cd06186          94 GPYGS--------SSEDL---------LSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVR  148 (210)
T ss_pred             CCCCC--------CccCh---------hhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEEC
Confidence            99995        32111         247899999999999999999999987642   357899999987

ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.81  E-value=4e-19  Score=187.49  Aligned_cols=132  Identities=22%  Similarity=0.315  Sum_probs=112.0

Q ss_pred             EEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCC
Q psy5567          96 LKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGL  175 (314)
Q Consensus        96 ~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (314)
                      ++|+++++++++++.|+|+.|...  .                                                   .+
T Consensus         2 ~~I~~~~~~t~~v~~l~l~~p~~~--~---------------------------------------------------~~   28 (752)
T PRK12778          2 NKIVEKEIFSEKVFLLEIEAPLIA--K---------------------------------------------------SR   28 (752)
T ss_pred             CEEEEEEEEcCCEEEEEEeCCchh--c---------------------------------------------------cC
Confidence            579999999999999999876321  1                                                   57


Q ss_pred             CCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeE-EEEccccCcccc
Q psy5567         176 PIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPI-NVSGPRGRLAYL  254 (314)
Q Consensus       176 ~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v-~v~GP~G~~~y~  254 (314)
                      +||||++|+++..+  ..|+||+++.+.+.+.++|+||..           |.+|++|+++++||.| .++||+|++   
T Consensus        29 ~pGQFv~l~~~~~~--~~rp~Si~~~~~~~g~i~~~vk~v-----------G~~T~~L~~l~~Gd~v~~v~GP~G~~---   92 (752)
T PRK12778         29 KPGQFVIVRVGEKG--ERIPLTIADADPEKGTITLVIQEV-----------GLSTTKLCELNEGDYITDVVGPLGNP---   92 (752)
T ss_pred             CCCeeEEEEeCCCC--CeeEEEeeeeCCCCCEEEEEEEEc-----------CchHHHHhcCCCCCEeCeEeCCCCCC---
Confidence            89999999986433  468999999988889999999975           9999999999999999 899999963   


Q ss_pred             CCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         255 GNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       255 ~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                          |.+ +          ..++++|||||+|||||+++++++.+++   .+++|+|++|
T Consensus        93 ----~~~-~----------~~~~~llvaGG~GiaPl~~l~~~l~~~~---~~v~l~~g~r  134 (752)
T PRK12778         93 ----SEI-E----------NYGTVVCAGGGVGVAPMLPIVKALKAAG---NRVITILGGR  134 (752)
T ss_pred             ----ccC-C----------CCCeEEEEECCEeHHHHHHHHHHHHHCC---CeEEEEeccC
Confidence                222 2          2468999999999999999999998875   3799999986

>PLN02292 ferric-chelate reductase

Probab=99.77  E-value=8.2e-18  Score=176.04  Aligned_cols=139  Identities=22%  Similarity=0.324  Sum_probs=112.5

Q ss_pred             EEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccC
Q psy5567          94 VPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWL  173 (314)
Q Consensus        94 ~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (314)
                      ..+++.+++.+++++.+++|+.++.   .                                                   
T Consensus       325 ~~~~Iv~~~~l~~dvv~L~~~~~~~---~---------------------------------------------------  350 (702)
T PLN02292        325 NNVKLVSARVLPCDTVELNFSKNPM---L---------------------------------------------------  350 (702)
T ss_pred             cceEEEEEEEcCCCEEEEEEEcCCC---C---------------------------------------------------
Confidence            4678999999999999999986642   1                                                   


Q ss_pred             CCCCCcEEEEEeeeCCceeeeeeeeecCCC-CCceEEEEEEEEeecCCCCCCCCChhchHh-hcCCCCCe-----EEEEc
Q psy5567         174 GLPIGQHLSLSATINDEFVARAYTPVTSDE-HHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEP-----INVSG  246 (314)
Q Consensus       174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~-~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L-~~l~~Gd~-----v~v~G  246 (314)
                      .+.||||+.+.++..+....||||+++.+. ++++++|+||.+           |.+|++| +.++.||.     +.++|
T Consensus       351 ~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~-----------G~~T~~L~~~l~~gd~i~~~~V~VeG  419 (702)
T PLN02292        351 MYSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQ-----------GKWSTKLYHMLSSSDQIDRLAVSVEG  419 (702)
T ss_pred             CcCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEcC-----------CchhHHHHHhCCCCCccccceEEEEC
Confidence            678999999999765566789999999874 568899999964           8899999 56789984     57999


Q ss_pred             cccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCC----CccEEEEEEeC
Q psy5567         247 PRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTD----NTKMSLIFANQ  314 (314)
Q Consensus       247 P~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~----~~~v~Li~~~r  314 (314)
                      |+|.        +..+.         ..+++++|||||+||||++++++++.++..+    .++++|+|++|
T Consensus       420 PYG~--------~~~~~---------~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR  474 (702)
T PLN02292        420 PYGP--------ASTDF---------LRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFK  474 (702)
T ss_pred             CccC--------Ccccc---------ccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEEC
Confidence            9994        22111         2357999999999999999999999876432    26899999987

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.77  E-value=8.9e-18  Score=181.30  Aligned_cols=139  Identities=21%  Similarity=0.319  Sum_probs=115.3

Q ss_pred             ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccc
Q psy5567          92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFA  171 (314)
Q Consensus        92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (314)
                      .+.+++|++++.++++++.|+|+.|...  .                                                 
T Consensus       647 ~~~~~~I~~~~~lt~dv~~~~l~~p~~~--~-------------------------------------------------  675 (944)
T PRK12779        647 GQIPQTIVGKVQLAGGIVEFTVRAPMVA--R-------------------------------------------------  675 (944)
T ss_pred             cceEEEEEEEEEecCCEEEEEEeCCCcc--c-------------------------------------------------
Confidence            4789999999999999999999876431  1                                                 


Q ss_pred             cCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeE-EEEccccC
Q psy5567         172 WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPI-NVSGPRGR  250 (314)
Q Consensus       172 ~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v-~v~GP~G~  250 (314)
                        .+.||||++|....++  ..|+||+++.+.+.+.++|+||.+           |.+|.+|+++++||.| .++||.|+
T Consensus       676 --~~~PGQFv~L~~~~~g--e~rP~SIas~~~~~g~i~l~Vk~v-----------G~~T~~L~~lk~Gd~l~~I~GPlG~  740 (944)
T PRK12779        676 --SAQAGQFVRVLPWEKG--ELIPLTLADWDAEKGTIDLVVQGM-----------GTSSLEINRMAIGDAFSGIAGPLGR  740 (944)
T ss_pred             --cCCCCceEEEEeCCCC--CEEeEEccCCCCCCCEEEEEEEee-----------ccHHHHHhcCCCcCEEeeeecCCCC
Confidence              6789999999975444  358999999887789999999975           8899999999999999 59999996


Q ss_pred             ccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         251 LAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       251 ~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      +       |.++.        ....++++|||||+||||+++|++++.+.+   .+++|+|++|
T Consensus       741 ~-------f~~~~--------~~~~~~vllIAGGiGIAPl~sl~r~l~~~g---~~V~li~G~R  786 (944)
T PRK12779        741 A-------SELHR--------YEGNQTVVFCAGGVGLPPVYPIMRAHLRLG---NHVTLISGFR  786 (944)
T ss_pred             C-------cCCcc--------ccCCCcEEEEEccEeHHHHHHHHHHHHHCC---CCEEEEEEeC
Confidence            2       33322        012368999999999999999999998765   4799999987

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.75  E-value=2.1e-17  Score=179.52  Aligned_cols=132  Identities=20%  Similarity=0.347  Sum_probs=111.1

Q ss_pred             EEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCC
Q psy5567          96 LKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGL  175 (314)
Q Consensus        96 ~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (314)
                      ++|+++++++++++.|+|+.|+..  .                                                   .+
T Consensus         2 ~~I~~~~~l~~~~~~l~l~ap~~a--~---------------------------------------------------~~   28 (1006)
T PRK12775          2 YSIVRREAFSDTTFLWEVEAPDVA--A---------------------------------------------------SA   28 (1006)
T ss_pred             cEEEEEEEecCCEEEEEEecCCcc--c---------------------------------------------------CC
Confidence            579999999999999999877642  1                                                   67


Q ss_pred             CCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHh-hcCCCCCeE-EEEccccCccc
Q psy5567         176 PIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPI-NVSGPRGRLAY  253 (314)
Q Consensus       176 ~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L-~~l~~Gd~v-~v~GP~G~~~y  253 (314)
                      .||||++|+++..+  ..|+||+++.+.+.|+++|+||..           |.+|+|| .++++||.| .+.||+|.   
T Consensus        29 ~PGQFV~l~~~~~~--errplSIa~~~~~~g~i~l~vk~v-----------G~~T~~L~~~lk~Gd~l~~v~GPlG~---   92 (1006)
T PRK12775         29 EPGHFVMLRLYEGA--ERIPLTVADFDRKKGTITMVVQAL-----------GKTTREMMTKFKAGDTFEDFVGPLGL---   92 (1006)
T ss_pred             CCCeeEEEEeCCCC--eeEEEEecCcCCCCCEEEEEEEec-----------CcHHHHHHhcCCCCCEEeeeecCCCC---
Confidence            99999999985333  468999998887789999999964           9999999 699999999 89999995   


Q ss_pred             cCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         254 LGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       254 ~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                          .|.+.           ..++++|||||+||||+++|++++.+.+   .+++++|++|
T Consensus        93 ----~~~~~-----------~~~~vllVaGGiGIAPl~s~~r~l~~~g---~~v~li~g~R  135 (1006)
T PRK12775         93 ----PQHID-----------KAGHVVLVGGGLGVAPVYPQLRAFKEAG---ARTTGIIGFR  135 (1006)
T ss_pred             ----CCCCC-----------CCCeEEEEEEhHHHHHHHHHHHHHHhCC---CcEEEEEeCC
Confidence                22222           2468999999999999999999988775   4699999986

>PLN02631 ferric-chelate reductase

Probab=99.72  E-value=1.5e-16  Score=166.50  Aligned_cols=113  Identities=18%  Similarity=0.322  Sum_probs=90.0

Q ss_pred             CCCCCcEEEEEeeeCCceeeeeeeeecCCC-CCceEEEEEEEEeecCCCCCCCCChhchHh-hcCCC-CC--eEEEEccc
Q psy5567         174 GLPIGQHLSLSATINDEFVARAYTPVTSDE-HHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKV-GE--PINVSGPR  248 (314)
Q Consensus       174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~-~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L-~~l~~-Gd--~v~v~GP~  248 (314)
                      .+.||||+.+.++..+...+||||+++.++ +++.++|+||.           .|.+|++| +.++. |+  ++.+.||+
T Consensus       334 ~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~-----------~Gg~T~~L~~~l~~~g~~i~V~VeGPY  402 (699)
T PLN02631        334 HYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRR-----------QGSWTQKLYTHLSSSIDSLEVSTEGPY  402 (699)
T ss_pred             cCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEc-----------CChHHHHHHHhhhcCCCeeEEEEECCC
Confidence            678999999999876667789999999874 46889999995           49999999 44654 45  67888999


Q ss_pred             cCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCC----CccEEEEEEeC
Q psy5567         249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTD----NTKMSLIFANQ  314 (314)
Q Consensus       249 G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~----~~~v~Li~~~r  314 (314)
                      |.        +..+.         ..+++++|||||+||||+++++++++.+..+    .++++|+|++|
T Consensus       403 G~--------~~~~~---------~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR  455 (699)
T PLN02631        403 GP--------NSFDV---------SRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFK  455 (699)
T ss_pred             CC--------CCCCc---------CCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEEC
Confidence            94        22221         2467899999999999999999999865321    24799999987

>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]

Probab=99.71  E-value=4.3e-17  Score=157.88  Aligned_cols=138  Identities=24%  Similarity=0.419  Sum_probs=112.4

Q ss_pred             ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccc
Q psy5567          92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFA  171 (314)
Q Consensus        92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (314)
                      ..+..+++..+..++++.+++..+..+                                                     
T Consensus       214 ~~y~~~vt~~~r~~~~t~eit~~l~~~-----------------------------------------------------  240 (438)
T COG4097         214 FPYLGKVTAPQRGNVDTLEITIGLQGP-----------------------------------------------------  240 (438)
T ss_pred             cccceEEechhhcCcchheeecccCCc-----------------------------------------------------
Confidence            356788999999999977776665432                                                     


Q ss_pred             cCCCCCCcEEEEEeeeCC-ceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHh-hcCCCCCeEEEEcccc
Q psy5567         172 WLGLPIGQHLSLSATIND-EFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRG  249 (314)
Q Consensus       172 ~~~~~~GQ~v~l~~~~~~-~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L-~~l~~Gd~v~v~GP~G  249 (314)
                      | .+++|||..+++++.+ ....+|||++++.... +++|.||.-           |..|+-| ++|++|+.+++.||+|
T Consensus       241 ~-~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~~~s-el~FsIK~L-----------GD~Tk~l~dnLk~G~k~~vdGPYG  307 (438)
T COG4097         241 W-LYQAGQFAFLKIEIEEFRMRPHPFTIACSHEGS-ELRFSIKAL-----------GDFTKTLKDNLKVGTKLEVDGPYG  307 (438)
T ss_pred             c-cccCCceEEEEeccccccCCCCCeeeeeCCCCc-eEEEEehhh-----------hhhhHHHHHhccCCceEEEecCcc
Confidence            2 3799999999997633 4567999999887664 899999964           9999999 6799999999999999


Q ss_pred             CccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         250 RLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       250 ~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      +|.|+        .          .-.+-|+||||+||||++++++.+.... +...|+|+|+.|
T Consensus       308 ~F~~~--------~----------g~~~QVWIAGGIGITPFis~l~~l~~~~-s~~~V~L~Y~~~  353 (438)
T COG4097         308 KFDFE--------R----------GLNTQVWIAGGIGITPFISMLFTLAERK-SDPPVHLFYCSR  353 (438)
T ss_pred             eeecc--------c----------CCcccEEEecCcCcchHHHHHHhhcccc-cCCceEEEEEec
Confidence            75554        3          2334899999999999999999988844 467999999976

>PLN02844 oxidoreductase/ferric-chelate reductase

Probab=99.65  E-value=5.4e-15  Score=155.42  Aligned_cols=113  Identities=20%  Similarity=0.415  Sum_probs=87.4

Q ss_pred             CCCCCcEEEEEeeeCCceeeeeeeeecCCC-CCceEEEEEEEEeecCCCCCCCCChhchHh-h----cCCCC------Ce
Q psy5567         174 GLPIGQHLSLSATINDEFVARAYTPVTSDE-HHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-E----NMKVG------EP  241 (314)
Q Consensus       174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~-~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L-~----~l~~G------d~  241 (314)
                      .+.||||+++.++..+...+||||++|.+. +++.++|.||..           |..|+.| +    .+++|      .+
T Consensus       338 ~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~-----------gG~T~~L~~~i~~~l~~g~~~~~~~~  406 (722)
T PLN02844        338 KYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCE-----------GGWTNSLYNKIQAELDSETNQMNCIP  406 (722)
T ss_pred             CcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeC-----------CCchHHHHHHHHhhccCCCCcccceE
Confidence            689999999999876667889999999763 567899999964           5555555 2    23445      37


Q ss_pred             EEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCC----CccEEEEEEeC
Q psy5567         242 INVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTD----NTKMSLIFANQ  314 (314)
Q Consensus       242 v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~----~~~v~Li~~~r  314 (314)
                      +.++||+|.        +..+.         ..+++++|||||+||||++++++++..++..    ..+++|+|++|
T Consensus       407 v~VeGPYG~--------~s~~~---------~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR  466 (722)
T PLN02844        407 VAIEGPYGP--------ASVDF---------LRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVK  466 (722)
T ss_pred             EEEECCccC--------CCCCc---------cCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEEC
Confidence            899999994        33222         2468999999999999999999999864321    25899999987

>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=99.61  E-value=3e-15  Score=146.76  Aligned_cols=107  Identities=19%  Similarity=0.265  Sum_probs=85.7

Q ss_pred             eeeeeeeeecCCCC-CceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCC
Q psy5567         191 FVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDP  269 (314)
Q Consensus       191 ~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~  269 (314)
                      ...|+||++|++.. .+.++|+||++......+....|.+|+||+++++||.|.+.||.|        .|.++.      
T Consensus       162 l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~p~g--------~F~lp~------  227 (382)
T cd06207         162 IKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQRVTVFIKKS--------SFKLPK------  227 (382)
T ss_pred             CCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCCEEEEEEECC--------cccCCC------
Confidence            46799999999864 689999999874332223335799999999999999999999999        466654      


Q ss_pred             CCCCCCCeEEEEEcCcCHHHHHHHHHHHhh---CCCCCccEEEEEEeC
Q psy5567         270 PTNLKVTQLSMIAGGTGITPMLQLVRHITK---DPTDNTKMSLIFANQ  314 (314)
Q Consensus       270 ~~~~~~~~vvmIAgGtGItP~l~li~~l~~---~~~~~~~v~Li~~~r  314 (314)
                         ...++++|||||||||||++++++...   ++....++.|+||+|
T Consensus       228 ---~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R  272 (382)
T cd06207         228 ---DPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCR  272 (382)
T ss_pred             ---CCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCC
Confidence               235789999999999999999998653   222357899999987

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe

>cd06199 SiR Cytochrome p450- like alpha subunits of E

Probab=99.60  E-value=1.9e-15  Score=147.29  Aligned_cols=119  Identities=23%  Similarity=0.301  Sum_probs=92.6

Q ss_pred             CCCCCcEEEEEeeeCCceeeeeeeeecCCCC-CceEEEEEEEEeecCCCCCCCCChhchHhhcC-CCCCeEEEEccccCc
Q psy5567         174 GLPIGQHLSLSATINDEFVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENM-KVGEPINVSGPRGRL  251 (314)
Q Consensus       174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l-~~Gd~v~v~GP~G~~  251 (314)
                      .+++||++.+..+    ...|+||++|+|.. .+.++|+|++.......+ .+.|.+|+||+++ ++||.|.+.+|.|. 
T Consensus       131 ~~~~gq~l~l~~~----~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~-~~~G~~S~~L~~~~~~Gd~v~v~~~~~~-  204 (360)
T cd06199         131 RLTAEELLDLLRP----LQPRLYSIASSPKAVPDEVHLTVAVVRYESHGR-ERKGVASTFLADRLKEGDTVPVFVQPNP-  204 (360)
T ss_pred             CCCHHHHHHhCcC----CCCcceeeccCcccCCCeEEEEEEEeeecCCCC-ccceehhHHHHhcCCCCCEEEEEEecCC-
Confidence            6789999998753    25699999999864 578999998752111111 2579999999775 69999999986652 


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         252 AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       252 ~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                            .|.++.         ....+++|||+|||||||++|+++...... ..++.|+||+|
T Consensus       205 ------~F~lp~---------~~~~piImIa~GtGIAP~~s~l~~~~~~~~-~~~~~L~~G~R  251 (360)
T cd06199         205 ------HFRLPE---------DPDAPIIMVGPGTGIAPFRAFLQEREATGA-KGKNWLFFGER  251 (360)
T ss_pred             ------CcCCCC---------CCCCCEEEEecCcChHHHHHHHHHHHhccC-CCcEEEEEcCC
Confidence                  577754         235789999999999999999998876543 46899999987

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.

>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component

Probab=99.60  E-value=1.6e-15  Score=156.86  Aligned_cols=119  Identities=26%  Similarity=0.335  Sum_probs=95.3

Q ss_pred             CCCCCcEEEEEeeeCCceeeeeeeeecCCC-CCceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEccccCc
Q psy5567         174 GLPIGQHLSLSATINDEFVARAYTPVTSDE-HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRL  251 (314)
Q Consensus       174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~-~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~  251 (314)
                      .+.+||++.+..+    ...|+||++|++. ..++++|+|+++....+.+ .+.|.+|+||.+ +++||+|.+.+|.|. 
T Consensus       368 ~~~~gq~v~ll~~----~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~-~~~G~~S~~L~~~l~~Gd~v~v~~~~~~-  441 (597)
T TIGR01931       368 DLDAEQLISLLRP----LTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGR-ARLGGASGFLAERLKEGDTVPVYIEPND-  441 (597)
T ss_pred             CCCHHHHHHhCcc----cCCceeeeccCcccCCCEEEEEEEEEEecCCCC-ccccchhHHHHhhCCCCCEEEEEEeeCC-
Confidence            7899999998864    2579999999986 3678999998753222222 257999999976 999999999987652 


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         252 AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       252 ~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                            .|.++.         ...++++|||+|||||||++|++++...+. ..+++|+||+|
T Consensus       442 ------~F~lp~---------~~~~piImIg~GTGIAPfrsflq~r~~~~~-~g~~~LffG~R  488 (597)
T TIGR01931       442 ------NFRLPE---------DPDTPIIMIGPGTGVAPFRAFMQERAEDGA-KGKNWLFFGNP  488 (597)
T ss_pred             ------cccCCC---------CCCCCEEEEcCCcCchhHHHHHHHHHHccC-CCCEEEEECCC
Confidence                  677765         235789999999999999999999877653 46899999987

This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.

>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR)

Probab=99.59  E-value=1.9e-15  Score=148.26  Aligned_cols=120  Identities=23%  Similarity=0.302  Sum_probs=90.4

Q ss_pred             CCCCCcEEEEEeeeCCceeeeeeeeecCCCC-CceEEEEEEEEeecCC-CCCCCCChhchHhhcCCCCCeEEE--Ecccc
Q psy5567         174 GLPIGQHLSLSATINDEFVARAYTPVTSDEH-HGYMDLVVKVYFKNVH-PKFPDGGKMSQFLENMKVGEPINV--SGPRG  249 (314)
Q Consensus       174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~-~~~~~~G~~S~~L~~l~~Gd~v~v--~GP~G  249 (314)
                      ..+.||++.+..   . ...|+||++|++.. .+.++|+|++.....+ .+....|.+|+||+++++||.|.+  +||.|
T Consensus       146 ~~~~~~~l~~~p---~-l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~i~~p~g  221 (384)
T cd06206         146 ALPLATFLAMLP---P-MRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDSIHVSVRPSHS  221 (384)
T ss_pred             CCCHHHHHHhCc---c-cCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCCeEEEEEecCCC
Confidence            567799888763   2 25699999999854 5778888887632211 112247999999999999999985  58888


Q ss_pred             CccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhC---CCCCccEEEEEEeC
Q psy5567         250 RLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD---PTDNTKMSLIFANQ  314 (314)
Q Consensus       250 ~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~---~~~~~~v~Li~~~r  314 (314)
                              .|.++.         ...++++|||||||||||++|+++....   +.+..+++|+||+|
T Consensus       222 --------~F~l~~---------~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R  272 (384)
T cd06206         222 --------AFRPPS---------DPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCR  272 (384)
T ss_pred             --------ccCCCC---------CCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCC
Confidence                    466544         2357899999999999999999987542   33346899999987

NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

Probab=99.58  E-value=3.1e-15  Score=141.13  Aligned_cols=175  Identities=22%  Similarity=0.364  Sum_probs=123.3

Q ss_pred             ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccC------CCCC
Q psy5567          92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSA------PESE  165 (314)
Q Consensus        92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~  165 (314)
                      ...+++|++......-++++.+.+|+++.+.      |                   +.+-+-+++...-      ---+
T Consensus       133 kkWectViSNdN~ATFIKEL~laip~g~~vp------F-------------------raGGyiQie~pph~v~y~Dfdi~  187 (410)
T COG2871         133 KKWECTVISNDNKATFIKELKLAIPEGEEVP------F-------------------RAGGYIQIEAPPHTVNYKDFDIP  187 (410)
T ss_pred             cceeEEEEeCCchhhhhhhheeeCCCCCccc------c-------------------CCCceEEEecCCccccccccCCC
Confidence            3456888888888878889999998886542      2                   2222221111000      0001


Q ss_pred             CCcccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecC-CCCCCCCChhchHhhcCCCCCeEEE
Q psy5567         166 PPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNV-HPKFPDGGKMSQFLENMKVGEPINV  244 (314)
Q Consensus       166 ~~~~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~-~~~~~~~G~~S~~L~~l~~Gd~v~v  244 (314)
                      |.++=-|..|.-=+++.-    .++.+.|+||.+|-|++.|.+.|-||+..++- ++.. +-|.||.|+.+|++||.|.+
T Consensus       188 ~eY~~DWdkf~lf~~vs~----v~e~~~rAYSmAsYPeE~giI~~NvRIAtPPp~~~~~-PpG~mSSyi~sLKpGDKvti  262 (410)
T COG2871         188 PEYHEDWDKFNLFRYVSK----VDEPIIRAYSMASYPEEKGIIKLNVRIATPPPRNPDA-PPGQMSSYIWSLKPGDKVTI  262 (410)
T ss_pred             hhHhcchhhhchheeecc----ccHHHHHHhhhhcChhhcCeEEEEEEeccCCCCCCCC-CccceeeeEEeecCCCeEEE
Confidence            122222333332222221    24567899999999999999999999986653 3333 45999999999999999999


Q ss_pred             EccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         245 SGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       245 ~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      +||+|+        |..+.          ....++||+||.|.+||.+-|-.++.+-..++++++.||+|
T Consensus       263 sGPfGE--------fFaKd----------tdaemvFigGGAGmapmRSHIfDqL~rlhSkRkis~WYGAR  314 (410)
T COG2871         263 SGPFGE--------FFAKD----------TDAEMVFIGGGAGMAPMRSHIFDQLKRLHSKRKISFWYGAR  314 (410)
T ss_pred             eccchh--------hhhcc----------CCCceEEEecCcCcCchHHHHHHHHHhhcccceeeeeeccc
Confidence            999994        55544          46889999999999999999988887766689999999987

>PRK10953 cysJ sulfite reductase subunit alpha; Provisional

Probab=99.51  E-value=4e-14  Score=146.65  Aligned_cols=119  Identities=24%  Similarity=0.300  Sum_probs=94.0

Q ss_pred             CCCCCcEEEEEeeeCCceeeeeeeeecCCC-CCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccccCc
Q psy5567         174 GLPIGQHLSLSATINDEFVARAYTPVTSDE-HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRL  251 (314)
Q Consensus       174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~-~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~  251 (314)
                      .+.+||++.+..+    ...|+||++|++. ..++++|+|++.....+. ....|.+|.||. .+++||.|.+.+|.|. 
T Consensus       371 ~~~~~q~l~ll~~----l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g-~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~-  444 (600)
T PRK10953        371 QLDAEQLIGLLRP----LTPRLYSIASSQAEVENEVHITVGVVRYDIEG-RARAGGASSFLADRLEEEGEVRVFIEHND-  444 (600)
T ss_pred             CCCHHHHHHhCCC----CCCeeeecccCCCCCCCeEEEEEEEEEeecCC-CCcCceEhhhhhhcCCCCCEEEEEeccCC-
Confidence            6789999988764    2479999999985 457889988664222222 235799999995 6999999999998863 


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         252 AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       252 ~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                            .|.++.         ....+++|||+|||||||++++++....+. ..+++|+||+|
T Consensus       445 ------~F~lp~---------~~~~piImIg~GTGIAPfrsflq~r~~~~~-~~~~~LffG~R  491 (600)
T PRK10953        445 ------NFRLPA---------NPETPVIMIGPGTGIAPFRAFMQQRAADGA-PGKNWLFFGNP  491 (600)
T ss_pred             ------cccCCC---------CCCCCEEEEecCcCcHHHHHHHHHHHHcCC-CCCeEEEeecc
Confidence                  687765         245799999999999999999999877653 56899999997

>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate

Probab=99.50  E-value=6.4e-14  Score=138.36  Aligned_cols=102  Identities=22%  Similarity=0.318  Sum_probs=81.0

Q ss_pred             eeeeeeeeecCCCC-CceEEEEEEEEeecCCCCCCCCChhchHhhcCC-----CCCeEEEEc-cccCccccCCcceeecc
Q psy5567         191 FVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMK-----VGEPINVSG-PRGRLAYLGNGEFHIRA  263 (314)
Q Consensus       191 ~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~-----~Gd~v~v~G-P~G~~~y~~~g~f~l~~  263 (314)
                      ...|+||++|++.. .+.++|+|+++..      +..|.+|+||++++     +|+.|.+.+ |.|        .|.++.
T Consensus       172 ~~~R~YSIsSsp~~~~~~i~l~v~~v~~------~~~G~~S~~L~~l~~~~~~~G~~v~i~~~~~g--------~F~lp~  237 (398)
T cd06203         172 LQPRPYSIASSPLEGPGKLRFIFSVVEF------PAKGLCTSWLESLCLSASSHGVKVPFYLRSSS--------RFRLPP  237 (398)
T ss_pred             CCCcceeecCCcccCCCeEEEEEEEEEe------cCCChhhHHHHHhhhhhcCCCCEEEEEEecCC--------CcCCCC
Confidence            46799999999865 5899999998711      11599999999988     999999999 455        577654


Q ss_pred             cCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhC-----CCCCccEEEEEEeC
Q psy5567         264 VSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD-----PTDNTKMSLIFANQ  314 (314)
Q Consensus       264 ~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~-----~~~~~~v~Li~~~r  314 (314)
                              .....+++|||+|||||||++++++....     +....++.|+||+|
T Consensus       238 --------~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R  285 (398)
T cd06203         238 --------DDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCR  285 (398)
T ss_pred             --------cCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCC
Confidence                    01247899999999999999999987641     22357899999987

In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.49  E-value=5.1e-13  Score=143.67  Aligned_cols=125  Identities=17%  Similarity=0.292  Sum_probs=102.7

Q ss_pred             ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccc
Q psy5567          92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFA  171 (314)
Q Consensus        92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (314)
                      .....+|++++.++++++.++++.|....                                                   
T Consensus       789 ~~l~~~Vv~~~~lap~i~~L~l~aP~iA~---------------------------------------------------  817 (1028)
T PRK06567        789 YLLTSRVNKINILDDKTFELIIHSPLAAK---------------------------------------------------  817 (1028)
T ss_pred             hhhceEEEEEEEecCCEEEEEEeCcchhh---------------------------------------------------
Confidence            45678999999999999999998775321                                                   


Q ss_pred             cCCCCCCcEEEEEeeeCC--c-eeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccc
Q psy5567         172 WLGLPIGQHLSLSATIND--E-FVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPR  248 (314)
Q Consensus       172 ~~~~~~GQ~v~l~~~~~~--~-~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~  248 (314)
                        .+.||||++|+.+..+  . ...|++|+.+.+.+.|.++|++++.           |..|+.|+++++||.+.+.||.
T Consensus       818 --~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e~g~It~i~rvV-----------GkgT~~Ls~l~~Gd~v~v~GPL  884 (1028)
T PRK06567        818 --NFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVEKGLISFIVFEV-----------GKSTSLCKTLSENEKVVLMGPT  884 (1028)
T ss_pred             --cCCCCceEEEEeCCCCCccccCceeEEeeccCCCCCEEEEEEEEE-----------ChHHHHHhcCCCCCEEEEEccc
Confidence              4689999999974322  2 2446899999888889999999987           9999999999999999999999


Q ss_pred             cCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCC
Q psy5567         249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP  301 (314)
Q Consensus       249 G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~  301 (314)
                      |+       .|.++.           .+++++||||+|+||   +++++.+.+
T Consensus       885 G~-------pF~i~~-----------~k~vLLVgGGVGiAp---Lak~Lk~~G  916 (1028)
T PRK06567        885 GS-------PLEIPQ-----------NKKIVIVDFEVGNIG---LLKVLKENN  916 (1028)
T ss_pred             CC-------CCCCCC-----------CCeEEEEEccccHHH---HHHHHHHCC
Confidence            96       576543           468999999999997   456666554

>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain

Probab=99.47  E-value=2.4e-13  Score=134.63  Aligned_cols=107  Identities=21%  Similarity=0.276  Sum_probs=80.3

Q ss_pred             eeeeeeeecCCCC-CceEEEEEEEEeecCC--CCCCCCChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCC
Q psy5567         192 VARAYTPVTSDEH-HGYMDLVVKVYFKNVH--PKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKD  268 (314)
Q Consensus       192 ~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~--~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~  268 (314)
                      ..|+||++|++.. .+.++|+|++......  ......|.+|+||+++++||.|.+.++.+.       .|.++.     
T Consensus       176 ~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~~-------~F~lp~-----  243 (406)
T cd06202         176 QPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDTVPCFVRSAP-------SFHLPE-----  243 (406)
T ss_pred             CCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCCEEEEEEeeCC-------ccCCCC-----
Confidence            5799999999863 6778888877521110  111246999999999999999999876542       477654     


Q ss_pred             CCCCCCCCeEEEEEcCcCHHHHHHHHHHHhh-------CCCCCccEEEEEEeC
Q psy5567         269 PPTNLKVTQLSMIAGGTGITPMLQLVRHITK-------DPTDNTKMSLIFANQ  314 (314)
Q Consensus       269 ~~~~~~~~~vvmIAgGtGItP~l~li~~l~~-------~~~~~~~v~Li~~~r  314 (314)
                          ....+++|||+|||||||++++++...       .+....++.|+||+|
T Consensus       244 ----~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R  292 (406)
T cd06202         244 ----DPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCR  292 (406)
T ss_pred             ----CCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCC
Confidence                235789999999999999999997532       122357899999987

The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.

>KOG3378|consensus

Probab=99.45  E-value=2.1e-13  Score=127.96  Aligned_cols=136  Identities=26%  Similarity=0.373  Sum_probs=106.0

Q ss_pred             CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567          91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF  170 (314)
Q Consensus        91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      +.|.+++|++.+.++.|+..+.+.+.++.-..                                                
T Consensus       147 ~G~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~------------------------------------------------  178 (385)
T KOG3378|consen  147 DGEVEFKVTELINESSDVKSVYLGPKDPAFRI------------------------------------------------  178 (385)
T ss_pred             CCccceeeeeeeccccceeEEEecCCCcceee------------------------------------------------
Confidence            46999999999999999999999987663111                                                


Q ss_pred             ccCCCCCCcEEEEEeeeCCc--eeeeeeeeecC-CCCCceEEEEEEEEeecCCCCCCCCChhchHh-hcCCCCCeEEEEc
Q psy5567         171 AWLGLPIGQHLSLSATINDE--FVARAYTPVTS-DEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSG  246 (314)
Q Consensus       171 ~~~~~~~GQ~v~l~~~~~~~--~~~R~YTp~s~-~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L-~~l~~Gd~v~v~G  246 (314)
                        +...|||||.+....++.  +.-|-|+.++. +..++.++|.||+.         .+|.+|+|+ .++++||.|.++.
T Consensus       179 --~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~---------A~G~VS~~~H~~~KVGD~v~~S~  247 (385)
T KOG3378|consen  179 --SHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRV---------AGGVVSNFVHDNLKVGDIVGVSP  247 (385)
T ss_pred             --ccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeeh---------hchhhHHHhhccccccceeeccC
Confidence              167899999987765553  22344444432 22457799999998         889999999 6899999999999


Q ss_pred             cccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhh
Q psy5567         247 PRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITK  299 (314)
Q Consensus       247 P~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~  299 (314)
                      |-|+|.|...              ..+..++++++|||+||||+++||+..+.
T Consensus       248 PAG~F~~~r~--------------~~~~N~PL~~~a~GiGiTPLi~iiE~~~~  286 (385)
T KOG3378|consen  248 PAGNFVYKRS--------------EENVNRPLLCFAGGIGITPLIPIIETALL  286 (385)
T ss_pred             CCccceeehh--------------hhccCCceEEecCCcCccccHHHHHHHHh
Confidence            9996555431              12234899999999999999999998765

>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=99.44  E-value=3.6e-13  Score=133.83  Aligned_cols=107  Identities=20%  Similarity=0.239  Sum_probs=82.2

Q ss_pred             eeeeeeeeecCCC-CCceEEEEEEEEeecCCCCCCCCChhchHhhcCC---------------------CCCeEEEEccc
Q psy5567         191 FVARAYTPVTSDE-HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMK---------------------VGEPINVSGPR  248 (314)
Q Consensus       191 ~~~R~YTp~s~~~-~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~---------------------~Gd~v~v~GP~  248 (314)
                      ...|.||++|++. ..+.++|+|++............|.+|+||+++.                     +||.|.+..|.
T Consensus       176 ~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~~~  255 (416)
T cd06204         176 LQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFVRR  255 (416)
T ss_pred             CCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCCeEEEEEec
Confidence            4679999999986 4588999999863322111223499999998777                     89999999998


Q ss_pred             cCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhC---CCCCccEEEEEEeC
Q psy5567         249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD---PTDNTKMSLIFANQ  314 (314)
Q Consensus       249 G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~---~~~~~~v~Li~~~r  314 (314)
                      |        .|.++.         ....+++|||||||||||++|+++....   +....++.|+||+|
T Consensus       256 g--------~F~lp~---------~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R  307 (416)
T cd06204         256 S--------NFRLPT---------KPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCR  307 (416)
T ss_pred             C--------CCCCCC---------CCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCC
Confidence            8        566654         2357999999999999999999976432   22246899999987

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo

>PRK06214 sulfite reductase; Provisional

Probab=99.41  E-value=1.6e-12  Score=132.99  Aligned_cols=106  Identities=23%  Similarity=0.301  Sum_probs=80.3

Q ss_pred             eeeeeeeeecCCCC-CceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccccCccccCCcceeecccCCCC
Q psy5567         191 FVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKD  268 (314)
Q Consensus       191 ~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~  268 (314)
                      ...|+||++|++.. .+.++|+||+..... .+....|.+|+||+ ++++||.|.+.++.+.       .|.++.     
T Consensus       314 l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~Gd~V~v~i~~~~-------gF~lp~-----  380 (530)
T PRK06214        314 LQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAPGTRVRVYVQKAH-------GFALPA-----  380 (530)
T ss_pred             CCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCCCCEEEEEecCCC-------CCccCC-----
Confidence            46799999999863 689999999762221 22235799999995 7999999998763331       266654     


Q ss_pred             CCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         269 PPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       269 ~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                          ....+++|||+|||||||++|+++...... ..+++|+||+|
T Consensus       381 ----~~~~PiImIg~GTGIAPfrsfLq~r~~~~~-~g~~~LffG~R  421 (530)
T PRK06214        381 ----DPNTPIIMVGPGTGIAPFRAFLHERAATKA-PGRNWLFFGHQ  421 (530)
T ss_pred             ----CCCCCEEEEcCCeeHHHHHHHHHHHHHhcC-CCCeEEEEEec
Confidence                234689999999999999999998765432 46899999985

>KOG0039|consensus

Probab=99.25  E-value=6.7e-11  Score=123.78  Aligned_cols=125  Identities=16%  Similarity=0.302  Sum_probs=101.5

Q ss_pred             eEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccccc
Q psy5567          93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAW  172 (314)
Q Consensus        93 ~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (314)
                      ...+++.+...+..|+..+++.-|...                                                     
T Consensus       354 ~~~~~i~~~~llp~~vi~L~~~Kp~~f-----------------------------------------------------  380 (646)
T KOG0039|consen  354 QKNVKIAKVVLLPSDVLELIMSKPPGF-----------------------------------------------------  380 (646)
T ss_pred             hcCceEEEEEEcCCCeEEEEEeCCCCC-----------------------------------------------------
Confidence            344789999999999999999876321                                                     


Q ss_pred             CCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCC------------C
Q psy5567         173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKV------------G  239 (314)
Q Consensus       173 ~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~------------G  239 (314)
                       .+.||||+.+.++.-....++|||++|++ +++++.++||..           |++|+.|. .+..            .
T Consensus       381 -~y~~Gqyifv~~p~ls~~qwHPFTItSsp-~dd~lsvhIk~~-----------g~wT~~L~~~~~~~~~~~~~~~~~~~  447 (646)
T KOG0039|consen  381 -KYKPGQYIFVNCPSLSKLEWHPFTITSAP-EDDFLSVHIKAL-----------GDWTEKLRNAFSEVSQPPESDKSYPF  447 (646)
T ss_pred             -CCCCCCEEEEECccccccccCCceeecCC-CCCEEEEEEEec-----------CcHHHHHHHHHhhhcccccccccccC
Confidence             78999999999887777889999999999 778999999964           99999883 3331            3


Q ss_pred             CeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhC
Q psy5567         240 EPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD  300 (314)
Q Consensus       240 d~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~  300 (314)
                      -.+.+.||+|.-        . .        +..+++.++||+||+|+||+.++++.++.+
T Consensus       448 ~~i~IdGPYG~~--------s-~--------d~~~~e~~vLV~~GiGvtPf~sil~~l~~~  491 (646)
T KOG0039|consen  448 PKILIDGPYGAP--------S-Q--------DVFKYEVLVLVGGGIGVTPFASILKDLLNK  491 (646)
T ss_pred             ceEEEECCCCCC--------c-h--------hhhhcceEEEEccCcccCccHHHHHHHHhh
Confidence            468999999941        1 0        124688899999999999999999999865

>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]

Probab=99.19  E-value=9.3e-11  Score=121.23  Aligned_cols=106  Identities=24%  Similarity=0.302  Sum_probs=87.1

Q ss_pred             eeeeeeeeecCCCCC-ceEEEEEEEEeecCCCCCCCCChhchHhhcCCC-CCeEEEEccccCccccCCcceeecccCCCC
Q psy5567         191 FVARAYTPVTSDEHH-GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKV-GEPINVSGPRGRLAYLGNGEFHIRAVSKKD  268 (314)
Q Consensus       191 ~~~R~YTp~s~~~~~-g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~-Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~  268 (314)
                      ...|-||++|++... +.++|+|.++....+.+ ...|..|.||+++.+ ||.|.+....++       .|.++.     
T Consensus       371 lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~-~r~GvcS~~L~~~~~~g~~i~v~v~~n~-------nf~lp~-----  437 (587)
T COG0369         371 LKPRLYSIASSPGVSPDEVHLTVGVVRYQAEGR-ERYGVCSGYLADLLEEGDTIPVFVQPNK-------NFRLPE-----  437 (587)
T ss_pred             CCCeeeEeccCCCCCCCeEEEEEEEEEeccCCC-cccccchHHHHhhhcCCCeEEEEeccCC-------ccccCC-----
Confidence            356999999998754 78899988876665545 467999999977776 999998877664       688877     


Q ss_pred             CCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         269 PPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       269 ~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                          +..++++||+.|||||||++++++-..++. ..+.+|+||+|
T Consensus       438 ----~~~~PiIMIG~GTGIAPFRafvq~r~~~~~-~gk~wLfFG~R  478 (587)
T COG0369         438 ----DPETPIIMIGPGTGIAPFRAFVQERAANGA-EGKNWLFFGCR  478 (587)
T ss_pred             ----CCCCceEEEcCCCCchhHHHHHHHHHhccc-cCceEEEecCC
Confidence                234899999999999999999999888775 45899999987

>KOG0534|consensus

Probab=99.18  E-value=2.1e-11  Score=115.98  Aligned_cols=51  Identities=51%  Similarity=0.827  Sum_probs=48.0

Q ss_pred             CccCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccceee
Q psy5567           1 AWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVG   51 (314)
Q Consensus         1 ~~lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll~   51 (314)
                      +.||+|+||||.+++.++|+.++|||||+|++.+.|+|||+||.|+.|.|+
T Consensus        78 ~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~~g~~~l~VK~Y~~G~mS  128 (286)
T KOG0534|consen   78 HVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDDKGYFDLVVKVYPKGKMS  128 (286)
T ss_pred             hccCcccceEEEEEecCCCcEEEEecCCccCccccceEEEEEEeccCCccc
Confidence            478999999999999999999999999999998999999999999997764

>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]

Probab=98.92  E-value=2.6e-08  Score=93.88  Aligned_cols=133  Identities=16%  Similarity=0.210  Sum_probs=101.0

Q ss_pred             CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567          91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF  170 (314)
Q Consensus        91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      ...+.++|+.++++|++..+++|..+......                                                
T Consensus        15 ~~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~------------------------------------------------   46 (265)
T COG2375          15 PRLHEATVTRVTQLSPHMVRVVLGGEGLAGFA------------------------------------------------   46 (265)
T ss_pred             ccceEEEEEEEEecCCCeEEEEEecccccccc------------------------------------------------
Confidence            45889999999999999999999987654321                                                


Q ss_pred             ccCCCC-CCcEEEEEeeeC--------------------CceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChh
Q psy5567         171 AWLGLP-IGQHLSLSATIN--------------------DEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKM  229 (314)
Q Consensus       171 ~~~~~~-~GQ~v~l~~~~~--------------------~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~  229 (314)
                         ... ..|||.|-++.+                    .....|.||+-..+.+.++|++-+=..        .++|.+
T Consensus        47 ---~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~~d~~~~e~~vDfVlH--------~~~gpa  115 (265)
T COG2375          47 ---SLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRAVDAAAGELDVDFVLH--------GEGGPA  115 (265)
T ss_pred             ---cccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeeeecccccEEEEEEEEc--------CCCCcc
Confidence               112 233666555432                    225689999987777777766655443        268999


Q ss_pred             chHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhC
Q psy5567         230 SQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD  300 (314)
Q Consensus       230 S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~  300 (314)
                      |+|..+.++||+|.+.||.|.        +..++          ..+.++|++--|++--+..+|+++-..
T Consensus       116 s~WA~~a~~GD~l~i~GP~g~--------~~p~~----------~~~~~lLigDetAlPAIa~iLE~lp~~  168 (265)
T COG2375         116 SRWARTAQPGDTLTIMGPRGS--------LVPPE----------AADWYLLIGDETALPAIARILETLPAD  168 (265)
T ss_pred             hhhHhhCCCCCEEEEeCCCCC--------CCCCC----------CcceEEEeccccchHHHHHHHHhCCCC
Confidence            999999999999999999994        33333          578999999999999999999876443

>KOG1159|consensus

Probab=98.88  E-value=7.6e-09  Score=103.74  Aligned_cols=103  Identities=23%  Similarity=0.339  Sum_probs=79.5

Q ss_pred             eeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCC
Q psy5567         192 VARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPT  271 (314)
Q Consensus       192 ~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~  271 (314)
                      ..|.||++|.+.... ++|+|-++...+--+.|..|..|+||.+|++|+.|.+.--.|        ++..+.        
T Consensus       367 rPR~fSIas~~~~~~-leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~~i~~~v~~g--------~l~~p~--------  429 (574)
T KOG1159|consen  367 RPRAFSIASSPGAHH-LELLVAIVEYKTILKEPRRGLCSNWLASLKPGDEIPIKVRPG--------TLYFPS--------  429 (574)
T ss_pred             ccceeeeccCCCCCc-eeEEEEEEEEeeeccccccchhHHHHhhcCCCCeEEEEEecC--------ccccCC--------
Confidence            469999999998754 998887764444455678899999999999999887765555        344443        


Q ss_pred             CCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         272 NLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       272 ~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                       ....+++||+-||||||+++++++-..+..  ....|+||+|
T Consensus       430 -~~~~PlImVGPGTGvAPfRa~i~er~~q~~--~~~~lFfGCR  469 (574)
T KOG1159|consen  430 -DLNKPLIMVGPGTGVAPFRALIQERIYQGD--KENVLFFGCR  469 (574)
T ss_pred             -CCCCCeEEEcCCCCcccHHHHHHHHHhhcc--CCceEEEecc
Confidence             236799999999999999999998765432  3447888987

>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins

Probab=98.86  E-value=1.6e-08  Score=84.28  Aligned_cols=95  Identities=21%  Similarity=0.260  Sum_probs=62.4

Q ss_pred             EEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCCC
Q psy5567          97 KLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLP  176 (314)
Q Consensus        97 ~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (314)
                      +|++++.+|++..+++|..++-....                                                   ...
T Consensus         1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~---------------------------------------------------~~~   29 (117)
T PF08021_consen    1 TVVRVERLTPHMRRVTLGGEDLAGFP---------------------------------------------------SWG   29 (117)
T ss_dssp             EEEEEEEEETTEEEEEEESGGGTT-----------------------------------------------------S--
T ss_pred             CEEEEEECCCCEEEEEEECCCcccCc---------------------------------------------------cCC
Confidence            68999999999999999976543221                                                   236


Q ss_pred             CCcEEEEEeeeCCc---------------------eeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhc
Q psy5567         177 IGQHLSLSATINDE---------------------FVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN  235 (314)
Q Consensus       177 ~GQ~v~l~~~~~~~---------------------~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~  235 (314)
                      ++||+.|.++.++.                     ...|.||+...+.+.++|+|-+-..        ...|..|+|..+
T Consensus        30 ~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~~l~iDfv~H--------g~~Gpas~WA~~  101 (117)
T PF08021_consen   30 PDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPETGELDIDFVLH--------GDEGPASRWARS  101 (117)
T ss_dssp             TT-EEEEEE--TTS----------------------EEEEEE--EEETT--EEEEEEE----------SS--HHHHHHHH
T ss_pred             CCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCCCCEEEEEEEEC--------CCCCchHHHHhh
Confidence            88888888876443                     2689999999888888888877665        123999999999


Q ss_pred             CCCCCeEEEEccccC
Q psy5567         236 MKVGEPINVSGPRGR  250 (314)
Q Consensus       236 l~~Gd~v~v~GP~G~  250 (314)
                      +++||.|.|.||.|.
T Consensus       102 A~pGd~v~v~gP~g~  116 (117)
T PF08021_consen  102 ARPGDRVGVTGPRGS  116 (117)
T ss_dssp             --TT-EEEEEEEE--
T ss_pred             CCCCCEEEEeCCCCC
Confidence            999999999999994

This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.

>KOG1158|consensus

Probab=98.85  E-value=7.3e-09  Score=107.89  Aligned_cols=109  Identities=26%  Similarity=0.287  Sum_probs=75.0

Q ss_pred             eeeeeeeeecCCC-CCceEEEEEEEEeecCCC-CCCCCChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCC
Q psy5567         191 FVARAYTPVTSDE-HHGYMDLVVKVYFKNVHP-KFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKD  268 (314)
Q Consensus       191 ~~~R~YTp~s~~~-~~g~l~l~VK~~~~~~~~-~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~  268 (314)
                      ...|.||++|++. ..+.+.+++-+....... ....-|..|+||+++++|+.+..-+|.++.      .|.+++     
T Consensus       420 L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~~~~~~~~s------~frlp~-----  488 (645)
T KOG1158|consen  420 LQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVPNPVPVGKS------MFRLPS-----  488 (645)
T ss_pred             ccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccCcceeeccc------ceecCC-----
Confidence            5679999999875 345566655442111100 011229999999999999998754455532      466665     


Q ss_pred             CCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCC----CCccEEEEEEeC
Q psy5567         269 PPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT----DNTKMSLIFANQ  314 (314)
Q Consensus       269 ~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~----~~~~v~Li~~~r  314 (314)
                          +...+++|||.|||||||++++++.+....    -...++|+||+|
T Consensus       489 ----dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf~GcR  534 (645)
T KOG1158|consen  489 ----DPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGGMWLFFGCR  534 (645)
T ss_pred             ----CCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcceEEEEeCC
Confidence                346899999999999999999998765421    122389999987

>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245

Probab=98.50  E-value=1.5e-08  Score=82.51  Aligned_cols=64  Identities=22%  Similarity=0.216  Sum_probs=5.7

Q ss_pred             CCCCCcEEEEEeeeCC--ceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcC--------CCCCeEE
Q psy5567         174 GLPIGQHLSLSATIND--EFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENM--------KVGEPIN  243 (314)
Q Consensus       174 ~~~~GQ~v~l~~~~~~--~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l--------~~Gd~v~  243 (314)
                      .+.||||+.|.++.-.  ...++|||+++.++ .+.+.|+||..           |.+|+.|.+.        ..+-.+.
T Consensus        29 ~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~-~~~i~l~ik~~-----------g~~T~~L~~~~~~~~~~~~~~~~v~   96 (105)
T PF08022_consen   29 KWKPGQYVFLSFPSISKWFWQWHPFTIASSPE-DNSITLIIKAR-----------GGWTKRLYEHLSESPSKQGNRLRVF   96 (105)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCceEEEEEEcCcCcCcccccccEeeccCC-CCEEEEEEEeC-----------CCchHHHHHHHhhhcccCCCceEEE
Confidence            6899999999997655  34889999999887 58999999975           8888888433        3445788


Q ss_pred             EEcccc
Q psy5567         244 VSGPRG  249 (314)
Q Consensus       244 v~GP~G  249 (314)
                      +.||+|
T Consensus        97 idGPYG  102 (105)
T PF08022_consen   97 IDGPYG  102 (105)
T ss_dssp             TTSTTS
T ss_pred             EECCCC
Confidence            999999

; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.

>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain

Probab=98.44  E-value=3.7e-07  Score=72.28  Aligned_cols=49  Identities=33%  Similarity=0.614  Sum_probs=43.5

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccceee
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVG   51 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll~   51 (314)
                      +...+||||.++...+|+.+.|+|||++.+.+.|+++|+||.|++|.++
T Consensus        28 ~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~~~~~~~~ik~~~~G~~S   76 (99)
T PF00970_consen   28 LDFKPGQFVSVRVPINGKQVSRPYSPASSPDDKGYLEFAIKRYPNGRVS   76 (99)
T ss_dssp             -SSTTT-EEEEEEEETTEEEEEEEEBCSSTTSSSEEEEEEEECTTSHHH
T ss_pred             cccCcceEEEEEEccCCcceecceeEeeecCCCCcEEEEEEeccCCHHH
Confidence            5678999999999999999999999999999999999999999887654

To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....

>PLN02252 nitrate reductase [NADPH]

Probab=97.82  E-value=2.4e-05  Score=85.04  Aligned_cols=45  Identities=49%  Similarity=0.786  Sum_probs=41.9

Q ss_pred             ccCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeec
Q psy5567           2 WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVP   46 (314)
Q Consensus         2 ~lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~   46 (314)
                      .+++++||||++++..+|+.++|+|||+|.+.+.|+|+|+||+|.
T Consensus       662 ~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~~g~lel~VK~~~  706 (888)
T PLN02252        662 VLGLPVGKHVFLCATINGKLCMRAYTPTSSDDEVGHFELVIKVYF  706 (888)
T ss_pred             cCCCCCCCEEEEEEecCCeEEEeeeEecccCCCCCEEEEEEEEEe
Confidence            468999999999999999999999999999888899999999993

>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor

Probab=97.00  E-value=0.00082  Score=60.43  Aligned_cols=47  Identities=47%  Similarity=0.849  Sum_probs=41.5

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      +...+|||+.++...+|+...|+||+++.+.+.+.++|+||.+++|.
T Consensus        27 ~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~~~~~~~~v~~~~~G~   73 (234)
T cd06183          27 LGLPVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIYPGGK   73 (234)
T ss_pred             CCCCcccEEEEEecCCCcccccccccccCCCcCCEEEEEEEECCCCc
Confidence            45678999999998888889999999998888889999999998664

Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.

>PTZ00319 NADH-cytochrome B5 reductase; Provisional

Probab=96.98  E-value=0.0012  Score=63.22  Aligned_cols=43  Identities=42%  Similarity=0.845  Sum_probs=38.1

Q ss_pred             cCCcccceEEEEEEeCCe----eeEEeccCCCCCCCceeEEEEeeee
Q psy5567           3 LGLPIGQHLSLSATINDE----FVARAYTPVTSDEHHGYMDLVVKSV   45 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~----~v~RpYTPvs~~~~~g~~~llIK~Y   45 (314)
                      ++..+|||+.++...+|+    .+.|+|||+|.+.+.|+++|.||.|
T Consensus        62 ~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~~~~i~~~Ik~~  108 (300)
T PTZ00319         62 LGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDEKGYVDFLIKVY  108 (300)
T ss_pred             CCCccceEEEEEEEeCCCCccceEEeeeccCCCcccCCEEEEEEEEe
Confidence            567899999999987654    5889999999988899999999998

>PTZ00274 cytochrome b5 reductase; Provisional

Probab=96.90  E-value=0.0015  Score=63.52  Aligned_cols=49  Identities=29%  Similarity=0.401  Sum_probs=40.9

Q ss_pred             cCCcccceEEEEEEe---CCeeeEEeccCCCCCCCceeEEEEeeeeccceee
Q psy5567           3 LGLPIGQHLSLSATI---NDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVG   51 (314)
Q Consensus         3 lglpvg~hv~~~~~~---~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll~   51 (314)
                      ++..+|||+.+....   +++.+.|+|||+|.+.+.++++|.||.++.|.++
T Consensus        80 ~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~le~~IK~~~~G~~S  131 (325)
T PTZ00274         80 FNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRKKDGLMT  131 (325)
T ss_pred             cCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeEEEEEEEcCCCccc
Confidence            567899999987653   2467899999999988889999999999988654

>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=96.63  E-value=0.0034  Score=56.63  Aligned_cols=47  Identities=32%  Similarity=0.426  Sum_probs=40.1

Q ss_pred             cCCcccceEEEEEE-eCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           3 LGLPIGQHLSLSAT-INDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         3 lglpvg~hv~~~~~-~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      +...+|||+.++.. .+|....||||+.+.+.+.|.++|+||.+.+|.
T Consensus        29 ~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~~~G~   76 (235)
T cd06217          29 PPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVPGGE   76 (235)
T ss_pred             CCcCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEcCCCc
Confidence            35678999999987 677778899999998888899999999987653

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form

>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

Probab=96.59  E-value=0.0028  Score=57.83  Aligned_cols=46  Identities=20%  Similarity=0.292  Sum_probs=38.9

Q ss_pred             cCCcccceEEEEEEeC-CeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           3 LGLPIGQHLSLSATIN-DEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         3 lglpvg~hv~~~~~~~-g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      +...+|||+.++...+ |+.+.|+||+++.+.+ |.++|+||.+++|.
T Consensus        23 ~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~i~~~i~~~~~G~   69 (241)
T cd06195          23 FRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYE-ENLEFYIILVPDGP   69 (241)
T ss_pred             CccCCCCeEEEeccCCCCCeeeecccccCCCCC-CeEEEEEEEecCCC
Confidence            3467899999998866 7888999999997765 89999999998754

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.

>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=96.57  E-value=0.004  Score=56.02  Aligned_cols=47  Identities=36%  Similarity=0.456  Sum_probs=41.0

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      +...+|||+.++...+|+...|+||+.+.+.+.+.++|+||.+++|.
T Consensus        26 ~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~   72 (231)
T cd06215          26 FAYKPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRVPGGL   72 (231)
T ss_pred             CCcCCCCeEEEEEecCCCeEEEeeecccCCCCCCcEEEEEEEcCCCc
Confidence            35678999999998888888999999998888889999999998764

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr

>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

Probab=96.52  E-value=0.0035  Score=55.62  Aligned_cols=47  Identities=28%  Similarity=0.361  Sum_probs=40.9

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      +...+|||+.++...+|....|+||+.+.+.+.+.++|+||.++.|.
T Consensus        21 ~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~~l~vk~~~~G~   67 (223)
T cd00322          21 FSFKPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTVKIVPGGP   67 (223)
T ss_pred             CCcCCCcEEEEEecCCCCcceeeeeccCCCCCCCeEEEEEEEeCCCc
Confidence            34678999999998778889999999998888899999999998553

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in

>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=96.43  E-value=0.0064  Score=55.51  Aligned_cols=46  Identities=33%  Similarity=0.439  Sum_probs=40.3

Q ss_pred             CCcccceEEEEEEeCCeeeEEeccCCCCCC-CceeEEEEeeeeccce
Q psy5567           4 GLPIGQHLSLSATINDEFVARAYTPVTSDE-HHGYMDLVVKSVPSIL   49 (314)
Q Consensus         4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~-~~g~~~llIK~Y~~gl   49 (314)
                      ...+|||+.++...+|+...|+||+.+.+. +.+.++|+||.+++|.
T Consensus        45 ~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~~~~G~   91 (243)
T cd06216          45 GHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKAQPDGL   91 (243)
T ss_pred             CcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEEcCCCc
Confidence            457899999999888988899999999877 6899999999987654

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=96.39  E-value=0.0043  Score=69.62  Aligned_cols=41  Identities=20%  Similarity=0.503  Sum_probs=38.4

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEee
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVK   43 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK   43 (314)
                      +++.+||||.++...+|+.+.|+|||+|.+++.++++|+||
T Consensus       946 ~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~~~~i~l~Vr  986 (1167)
T PTZ00306        946 SGLTLGQFIAIRGDWDGQQLIGYYSPITLPDDLGVISILAR  986 (1167)
T ss_pred             cCCCCCeEEEEEeeeCCeEEEEEeccCCCCCCCCeEEEEEE
Confidence            57899999999998899999999999999988899999998

>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase

Probab=96.28  E-value=0.0068  Score=54.98  Aligned_cols=46  Identities=30%  Similarity=0.394  Sum_probs=39.5

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      +...+|||+.++...+|....|+||+.+.+.+. .++|+||.+++|.
T Consensus        31 ~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~~-~l~~~i~~~~~G~   76 (241)
T cd06214          31 FRYRPGQFLTLRVPIDGEEVRRSYSICSSPGDD-ELRITVKRVPGGR   76 (241)
T ss_pred             CCcCCCCeEEEEeecCCCeeeeeeeecCCCCCC-cEEEEEEEcCCCc
Confidence            457889999999998888889999999976554 8999999998764

PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and

>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain

Probab=96.27  E-value=0.0082  Score=54.30  Aligned_cols=45  Identities=29%  Similarity=0.440  Sum_probs=39.0

Q ss_pred             CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      ...+|||+.++...+|+...|+||+.+.+. .++++|.||.++.|.
T Consensus        27 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-~~~l~~~v~~~~~G~   71 (231)
T cd06191          27 GFRPGQHVTLKLDFDGEELRRCYSLCSSPA-PDEISITVKRVPGGR   71 (231)
T ss_pred             CCCCCCeEEEEEecCCeEEeeeeeccCCCC-CCeEEEEEEECCCCc
Confidence            457899999999888888899999999776 789999999987653

FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in

>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=95.97  E-value=0.008  Score=54.38  Aligned_cols=44  Identities=14%  Similarity=0.325  Sum_probs=36.8

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccc
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSI   48 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~g   48 (314)
                      +...+|||+.++..  |....||||+++.+.+.|+++|+||.++.|
T Consensus        28 ~~~~pGQ~v~l~~~--~~~~~r~ySi~s~~~~~~~l~l~vk~~~~G   71 (232)
T cd06212          28 IKFFAGQYVDITVP--GTEETRSFSMANTPADPGRLEFIIKKYPGG   71 (232)
T ss_pred             CCcCCCCeEEEEcC--CCCcccccccCCCCCCCCEEEEEEEECCCC
Confidence            35678999999754  444789999999888889999999999876

These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.

>PRK10926 ferredoxin-NADP reductase; Provisional

Probab=95.89  E-value=0.014  Score=53.94  Aligned_cols=44  Identities=27%  Similarity=0.395  Sum_probs=37.9

Q ss_pred             CcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           5 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         5 lpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      ..+|||+.++...+|+.+.|+||..|.+.+ +.++|+||.+++|.
T Consensus        31 ~~pGQfv~l~~~~~g~~~~R~ySias~p~~-~~l~~~ik~~~~G~   74 (248)
T PRK10926         31 FTAGQFTKLGLEIDGERVQRAYSYVNAPDN-PDLEFYLVTVPEGK   74 (248)
T ss_pred             CCCCCEEEEEEecCCcEEEeeecccCCCCC-CeEEEEEEEeCCCC
Confidence            468999999998889888999999997654 58999999998775

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional

Probab=95.88  E-value=0.013  Score=56.44  Aligned_cols=46  Identities=22%  Similarity=0.217  Sum_probs=38.8

Q ss_pred             CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeecccee
Q psy5567           4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILV   50 (314)
Q Consensus         4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll   50 (314)
                      ...+|||+.++.. +++...|+||..|.+.+.++++|.||.+++|.+
T Consensus        36 ~f~pGQfv~l~~~-~~~~~~R~ySias~p~~~~~l~i~Vk~~~~G~~   81 (332)
T PRK10684         36 PYRAGQYALVSIR-NSAETLRAYTLSSTPGVSEFITLTVRRIDDGVG   81 (332)
T ss_pred             CcCCCCEEEEEec-CCCEeeeeecccCCCCCCCcEEEEEEEcCCCcc
Confidence            3568999999976 556678999999988888899999999988753

>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain

Probab=95.85  E-value=0.01  Score=53.03  Aligned_cols=44  Identities=20%  Similarity=0.280  Sum_probs=36.4

Q ss_pred             cCCcccceEEEEEEeCC-eeeEEeccCCCCCCCceeEEEEeeeecc
Q psy5567           3 LGLPIGQHLSLSATIND-EFVARAYTPVTSDEHHGYMDLVVKSVPS   47 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g-~~v~RpYTPvs~~~~~g~~~llIK~Y~~   47 (314)
                      +...+|||+.++...+| +...|+||+.|.+.+ +.++|+||.++.
T Consensus        26 ~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~l~~~vk~~~~   70 (218)
T cd06196          26 YDFTPGQATEVAIDKPGWRDEKRPFTFTSLPED-DVLEFVIKSYPD   70 (218)
T ss_pred             CCCCCCCEEEEEeeCCCCCccccccccccCCCC-CeEEEEEEEcCC
Confidence            35678999999987655 457799999997654 899999999985

The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain

Probab=95.85  E-value=0.01  Score=53.61  Aligned_cols=45  Identities=16%  Similarity=0.276  Sum_probs=36.7

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeecccee
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILV   50 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll   50 (314)
                      +...+|||+.++..  |....|+||+.+.+.+ +.++|+||.+++|.+
T Consensus        29 ~~~~pGQ~v~l~~~--~~~~~r~ysi~s~~~~-~~i~~~i~~~~~G~~   73 (228)
T cd06209          29 LAFLPGQYVNLQVP--GTDETRSYSFSSAPGD-PRLEFLIRLLPGGAM   73 (228)
T ss_pred             CccCCCCEEEEEeC--CCCcccccccccCCCC-CeEEEEEEEcCCCcc
Confidence            34678999999854  5567899999997766 899999999987754

Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit

Probab=95.85  E-value=0.015  Score=56.28  Aligned_cols=45  Identities=29%  Similarity=0.501  Sum_probs=38.8

Q ss_pred             CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      ...+||||.++...+|..+.|+||..|.+. .++++|.||.++.|.
T Consensus        32 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~-~~~l~i~vk~~~~G~   76 (352)
T TIGR02160        32 RFAPGQHLTLRREVDGEELRRSYSICSAPA-PGEIRVAVKKIPGGL   76 (352)
T ss_pred             CCCCCCeEEEEEecCCcEeeeeccccCCCC-CCcEEEEEEEeCCCc
Confidence            567899999999888988899999888653 589999999998764

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=95.74  E-value=0.013  Score=52.95  Aligned_cols=44  Identities=20%  Similarity=0.292  Sum_probs=36.7

Q ss_pred             CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      ...+|||+.++..  +....|+||+.+.+.+.+.++|+||.+++|.
T Consensus        27 ~~~pGQ~~~l~~~--~~~~~r~ysi~s~~~~~~~l~~~vk~~~~G~   70 (227)
T cd06213          27 AYKAGQYAELTLP--GLPAARSYSFANAPQGDGQLSFHIRKVPGGA   70 (227)
T ss_pred             CcCCCCEEEEEeC--CCCcccccccCCCCCCCCEEEEEEEECCCCc
Confidence            4568999999874  4447899999998877899999999998764

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol

Probab=95.70  E-value=0.015  Score=52.73  Aligned_cols=46  Identities=13%  Similarity=0.296  Sum_probs=38.0

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeecccee
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILV   50 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll   50 (314)
                      +...+|||+.++..  |....|+||+.+.+.+.|.++|.||.++.|.+
T Consensus        33 ~~~~pGQ~v~l~~~--~~~~~R~ySi~s~~~~~~~l~~~i~~~~~G~~   78 (236)
T cd06210          33 AEFVPGQFVEIEIP--GTDTRRSYSLANTPNWDGRLEFLIRLLPGGAF   78 (236)
T ss_pred             CCcCCCCEEEEEcC--CCccceecccCCCCCCCCEEEEEEEEcCCCcc
Confidence            46778999999854  55578999999988878999999999876643

This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.

>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

Probab=95.65  E-value=0.014  Score=52.19  Aligned_cols=46  Identities=24%  Similarity=0.336  Sum_probs=37.0

Q ss_pred             CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeecccee
Q psy5567           4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILV   50 (314)
Q Consensus         4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll   50 (314)
                      ...+|||+.++..- +....|+||+.|.+.+.+.++|+||.+.+|.+
T Consensus        23 ~~~pGq~i~l~~~~-~~~~~r~ysi~s~~~~~~~~~~~i~~~~~G~~   68 (224)
T cd06187          23 PFWAGQYVNVTVPG-RPRTWRAYSPANPPNEDGEIEFHVRAVPGGRV   68 (224)
T ss_pred             CcCCCceEEEEcCC-CCCcceeccccCCCCCCCEEEEEEEeCCCCcc
Confidence            46789999999763 23477999999988778899999999876543

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E

Probab=95.58  E-value=0.012  Score=55.79  Aligned_cols=43  Identities=23%  Similarity=0.415  Sum_probs=35.3

Q ss_pred             CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      ...+||||.++  .+|..+.|+||+.|.+ +.|+++|+||.++.|.
T Consensus        83 ~~~pGQ~v~v~--~~g~~~~R~YSias~p-~~g~l~l~Vk~~~~G~  125 (289)
T cd06201          83 SFEAGDLLGIL--PPGSDVPRFYSLASSS-SDGFLEICVRKHPGGL  125 (289)
T ss_pred             CcCccCEEEEe--cCCCCCCceEecCCCC-CCCeEEEEEEeCCCcc
Confidence            35589999996  4687788999999977 4589999999987653

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F

>PRK11872 antC anthranilate dioxygenase reductase; Provisional

Probab=95.46  E-value=0.021  Score=55.35  Aligned_cols=45  Identities=16%  Similarity=0.197  Sum_probs=37.7

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      +...+|||+.++.  +|....|+||+.|.+.+.+.++|+||.+++|.
T Consensus       135 ~~~~pGQ~v~l~~--~~~~~~R~ySias~p~~~~~l~~~ik~~~~G~  179 (340)
T PRK11872        135 LDFLPGQYARLQI--PGTDDWRSYSFANRPNATNQLQFLIRLLPDGV  179 (340)
T ss_pred             cCcCCCCEEEEEe--CCCCceeecccCCCCCCCCeEEEEEEECCCCc
Confidence            3567899998885  46667899999998888899999999998764

>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin

Probab=95.44  E-value=0.026  Score=51.55  Aligned_cols=46  Identities=24%  Similarity=0.246  Sum_probs=37.5

Q ss_pred             cCCcccceEEEEEEeCC--eeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           3 LGLPIGQHLSLSATIND--EFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g--~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      +...+|||+.++...+|  ..+.|+||+.+.+.+ +.++|+||.+++|.
T Consensus        35 ~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~-~~l~~~ik~~~~G~   82 (247)
T cd06184          35 PPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG-DYYRISVKREPGGL   82 (247)
T ss_pred             CCCCCCCEEEEEEecCCCCCceeEEeEeccCCCC-CeEEEEEEEcCCCc
Confidence            45778999999988766  568899999987654 38999999988653

Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.

>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol

Probab=95.37  E-value=0.019  Score=52.38  Aligned_cols=45  Identities=24%  Similarity=0.343  Sum_probs=37.2

Q ss_pred             CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeecccee
Q psy5567           4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILV   50 (314)
Q Consensus         4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll   50 (314)
                      ...+|||+.++..  +....||||+.+.+.+.|.++|+||.+++|.+
T Consensus        35 ~~~pGQ~v~l~~~--~~~~~r~ySi~s~~~~~~~l~l~i~~~~~G~~   79 (238)
T cd06211          35 EFQAGQYVNLQAP--GYEGTRAFSIASSPSDAGEIELHIRLVPGGIA   79 (238)
T ss_pred             ccCCCCeEEEEcC--CCCCccccccCCCCCCCCEEEEEEEECCCCcc
Confidence            5689999999854  44467999999988778999999999987643

This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.

>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

Probab=95.22  E-value=0.024  Score=51.08  Aligned_cols=46  Identities=22%  Similarity=0.319  Sum_probs=37.1

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccceee
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVG   51 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll~   51 (314)
                      +...+|||+.++..- +  ..||||+.+.+.+.+.++|.||.++.|.++
T Consensus        24 ~~~~pGQ~v~l~~~~-~--~~r~ySi~s~~~~~~~l~~~vk~~~~G~~s   69 (224)
T cd06189          24 LDFLAGQYLDLLLDD-G--DKRPFSIASAPHEDGEIELHIRAVPGGSFS   69 (224)
T ss_pred             cccCCCCEEEEEcCC-C--CceeeecccCCCCCCeEEEEEEecCCCccH
Confidence            456789999999752 2  379999999888789999999999866543

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.

>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system

Probab=94.99  E-value=0.026  Score=51.01  Aligned_cols=44  Identities=23%  Similarity=0.213  Sum_probs=36.2

Q ss_pred             CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      ...+|||+.++..  +....|+||+.+.+.+.+.++|+||.+..|.
T Consensus        23 ~~~pGQ~v~l~~~--~~~~~r~ySi~s~~~~~~~~~~~vk~~~~G~   66 (232)
T cd06190          23 DFLPGQYALLALP--GVEGARAYSMANLANASGEWEFIIKRKPGGA   66 (232)
T ss_pred             ccCCCCEEEEECC--CCCcccCccCCcCCCCCCEEEEEEEEcCCCc
Confidence            4678999999974  3346799999998877899999999987654

Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.

>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

Probab=94.99  E-value=0.022  Score=50.89  Aligned_cols=43  Identities=19%  Similarity=0.245  Sum_probs=37.1

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSV   45 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y   45 (314)
                      +...+||||.++....+....||||+++.+.+.|.++|.||.+
T Consensus        21 ~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~l~l~vk~~   63 (216)
T cd06198          21 LGHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKAL   63 (216)
T ss_pred             CCcCCCCEEEEEeCCCCCCCCCCcEEecCCCCCCeEEEEEEeC
Confidence            4567899999998766677889999999888889999999974

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional

Probab=94.90  E-value=0.037  Score=54.35  Aligned_cols=47  Identities=21%  Similarity=0.192  Sum_probs=37.9

Q ss_pred             cCCcccceEEEEEEeCCeeeE--EeccCCCCCCCceeEEEEeeeecccee
Q psy5567           3 LGLPIGQHLSLSATINDEFVA--RAYTPVTSDEHHGYMDLVVKSVPSILV   50 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~--RpYTPvs~~~~~g~~~llIK~Y~~gll   50 (314)
                      +...+|||+.++...+|....  |+||..|.+. .+.++|.||.+++|.+
T Consensus       183 ~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~-~~~l~~~Vk~~~~G~~  231 (399)
T PRK13289        183 ADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN-GKYYRISVKREAGGKV  231 (399)
T ss_pred             CCCCCCCeEEEEEecCCccccceeEEEeeeCCC-CCeEEEEEEECCCCee
Confidence            356789999999988887665  9999887654 5799999999987643

>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family

Probab=94.66  E-value=0.027  Score=51.54  Aligned_cols=44  Identities=23%  Similarity=0.111  Sum_probs=37.3

Q ss_pred             CCcccceEEEEEEeCC-------------------eeeEEeccCCCCCCCceeEEEEeeeecc
Q psy5567           4 GLPIGQHLSLSATIND-------------------EFVARAYTPVTSDEHHGYMDLVVKSVPS   47 (314)
Q Consensus         4 glpvg~hv~~~~~~~g-------------------~~v~RpYTPvs~~~~~g~~~llIK~Y~~   47 (314)
                      ....|||+.++...+|                   ....|+||+.+.+.+.|+++|.||.+..
T Consensus        26 ~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l~~~v~~~~~   88 (235)
T cd06193          26 SDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELDIDFVLHGD   88 (235)
T ss_pred             CCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEEEEEEEeCCC
Confidence            3467999999987654                   5788999999987788999999999876

Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy

>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain

Probab=94.60  E-value=0.037  Score=52.02  Aligned_cols=43  Identities=23%  Similarity=0.335  Sum_probs=35.2

Q ss_pred             CCcccceEEEEEEeC-----------------------------CeeeEEeccCCCCCCCceeEEEEeeeec
Q psy5567           4 GLPIGQHLSLSATIN-----------------------------DEFVARAYTPVTSDEHHGYMDLVVKSVP   46 (314)
Q Consensus         4 glpvg~hv~~~~~~~-----------------------------g~~v~RpYTPvs~~~~~g~~~llIK~Y~   46 (314)
                      ...+||||.++...+                             |+.+.|+||..|.+.+.+.++|.||.+.
T Consensus        38 ~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p~~~~~l~l~vk~~~  109 (283)
T cd06188          38 AFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVSRAYSLANYPAEEGELKLNVRIAT  109 (283)
T ss_pred             eecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCccccccCcCCCCCCCCeEEEEEEEec
Confidence            457899999997532                             4557799999998887899999999853

(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.

>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain

Probab=94.24  E-value=0.067  Score=47.94  Aligned_cols=45  Identities=20%  Similarity=0.324  Sum_probs=35.9

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeecccee
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILV   50 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll   50 (314)
                      +...+|||+.++.. +  ...|+||+.|.+.+.+.++|+||.++.|.+
T Consensus        22 ~~~~pGQ~v~l~~~-~--~~~r~ySi~s~~~~~~~~~~~i~~~~~G~~   66 (222)
T cd06194          22 LPYLPGQYVNLRRA-G--GLARSYSPTSLPDGDNELEFHIRRKPNGAF   66 (222)
T ss_pred             CCcCCCCEEEEEcC-C--CCceeeecCCCCCCCCEEEEEEEeccCCcc
Confidence            34678999999974 2  245999999988777899999999976543

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e

>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins

Probab=94.08  E-value=0.057  Score=49.38  Aligned_cols=41  Identities=17%  Similarity=0.134  Sum_probs=35.5

Q ss_pred             CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeee
Q psy5567           4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKS   44 (314)
Q Consensus         4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~   44 (314)
                      ...+|||+.++...++....||||+.+.+.+.++++|.||.
T Consensus        24 ~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~~~~l~l~i~~   64 (243)
T cd06192          24 LFRPGQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVEI   64 (243)
T ss_pred             cCCCCCeEEEecCCCCCceeeeeEeeecCCCCCEEEEEEEE
Confidence            45689999999876667788999999988788999999986

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi

>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster

Probab=93.98  E-value=0.07  Score=47.36  Aligned_cols=42  Identities=14%  Similarity=0.220  Sum_probs=35.6

Q ss_pred             CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccc
Q psy5567           4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSI   48 (314)
Q Consensus         4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~g   48 (314)
                      ...+|||+.++...   ...|+||+.+.+.+.+.++|+||.+++|
T Consensus        25 ~~~pGQ~~~l~~~~---~~~r~ySi~s~~~~~~~l~~~v~~~~~g   66 (211)
T cd06185          25 AFEPGAHIDVHLPN---GLVRQYSLCGDPADRDRYRIAVLREPAS   66 (211)
T ss_pred             CCCCCceEEEEcCC---CCceeeeccCCCCCCCEEEEEEEeccCC
Confidence            57889999999643   4579999999888789999999999765

PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.

>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins

Probab=93.67  E-value=0.072  Score=48.41  Aligned_cols=43  Identities=16%  Similarity=0.258  Sum_probs=34.2

Q ss_pred             cCCcccceEEEEEEeC----------------CeeeEEeccCCCCCCCc---eeEEEEeeee
Q psy5567           3 LGLPIGQHLSLSATIN----------------DEFVARAYTPVTSDEHH---GYMDLVVKSV   45 (314)
Q Consensus         3 lglpvg~hv~~~~~~~----------------g~~v~RpYTPvs~~~~~---g~~~llIK~Y   45 (314)
                      ++..+||||.++....                ++.+.|+||..|.+.+.   +.++|.||..
T Consensus        24 ~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~vk~~   85 (220)
T cd06197          24 GKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITVRKK   85 (220)
T ss_pred             cccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEEEeC
Confidence            5677899999997531                34678999999988653   8999999974

Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

Probab=93.56  E-value=0.095  Score=50.47  Aligned_cols=44  Identities=18%  Similarity=0.341  Sum_probs=36.1

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      +...+|||+.++.. ++  ..|+||+.|.+.+.++++|+||.++.|.
T Consensus       130 ~~~~pGQfv~l~~~-~~--~~R~ySias~p~~~~~l~~~ik~~~~G~  173 (339)
T PRK07609        130 LQYLAGQYIEFILK-DG--KRRSYSIANAPHSGGPLELHIRHMPGGV  173 (339)
T ss_pred             CccCCCCeEEEECC-CC--ceeeeecCCCCCCCCEEEEEEEecCCCc
Confidence            34568999999864 23  3699999998888899999999998774

>PRK05713 hypothetical protein; Provisional

Probab=93.10  E-value=0.11  Score=49.62  Aligned_cols=46  Identities=22%  Similarity=0.267  Sum_probs=36.9

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccceee
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVG   51 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll~   51 (314)
                      +...+|||+.++..  + .+.|+|+..|.+.+.++++|.||.++.|.++
T Consensus       117 ~~~~~GQfv~l~~~--~-~~~R~ySias~p~~~~~l~~~I~~~~~G~~s  162 (312)
T PRK05713        117 LRYRAGQHLVLWTA--G-GVARPYSLASLPGEDPFLEFHIDCSRPGAFC  162 (312)
T ss_pred             CCcCCCCEEEEecC--C-CcccccccCcCCCCCCeEEEEEEEcCCCccc
Confidence            34578999999762  3 3689999999888789999999999876443

>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

Probab=91.39  E-value=0.2  Score=46.28  Aligned_cols=43  Identities=23%  Similarity=0.278  Sum_probs=35.5

Q ss_pred             cCCcccceEEEEEEe-CCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567           3 LGLPIGQHLSLSATI-NDEFVARAYTPVTSDEHHGYMDLVVKSV   45 (314)
Q Consensus         3 lglpvg~hv~~~~~~-~g~~v~RpYTPvs~~~~~g~~~llIK~Y   45 (314)
                      +...+|||+.++... ++....|+||+.|.+.+.+.++|.||.+
T Consensus        23 ~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~   66 (246)
T cd06218          23 AAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKVV   66 (246)
T ss_pred             ccCCCCcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEEE
Confidence            356789999999875 4455779999999777788999999986

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

Probab=91.30  E-value=0.32  Score=46.08  Aligned_cols=44  Identities=18%  Similarity=0.225  Sum_probs=40.3

Q ss_pred             CcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccc
Q psy5567           5 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSI   48 (314)
Q Consensus         5 lpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~g   48 (314)
                      ..+||||.+....+|+.++|.||=.|.+.+...+.+-||..+.|
T Consensus        35 f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isVk~~~~G   78 (266)
T COG1018          35 FEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKREDGG   78 (266)
T ss_pred             cCCCCeEEEEecCCCceeeEEEEeccCCCCCceEEEEEEEeCCC
Confidence            46899999999999999999999999999889999999998763

>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=90.71  E-value=0.27  Score=46.16  Aligned_cols=43  Identities=26%  Similarity=0.379  Sum_probs=34.6

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCC-ceeEEEEeeeecc
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEH-HGYMDLVVKSVPS   47 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~-~g~~~llIK~Y~~   47 (314)
                      +...+||||.++.  +|....|+||..|.+++ .+.++|.||..+.
T Consensus        30 ~~~~pGQ~v~l~~--~~~~~~R~ySias~p~~~~~~l~l~Ik~~~~   73 (267)
T cd06182          30 LKYQPGDHLGVIP--PNPLQPRYYSIASSPDVDPGEVHLCVRVVSY   73 (267)
T ss_pred             CccCCCCEEEEec--CCCCCCeeEeecCCCCCCCCEEEEEEEEEEE
Confidence            4567899998885  46667899999998754 7999999998643

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t

>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=90.71  E-value=0.27  Score=45.92  Aligned_cols=46  Identities=22%  Similarity=0.258  Sum_probs=39.6

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccceee
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVG   51 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll~   51 (314)
                      +...+||+|+++..-   ...|||+.-+.+.++|.++|.|++|+.|.++
T Consensus        34 ~~~~pGQfv~l~~~~---~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T   79 (252)
T COG0543          34 LTFKPGQFVMLRVPG---GVRRPYSLASAPDDKGELELHIRVYEVGKVT   79 (252)
T ss_pred             cccCCCcEEEEEeCC---CcEEEeeeccCCCcCCcEEEEEEEEeCChHH
Confidence            457899999999876   6789999999888899999999999877654

>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide

Probab=90.58  E-value=0.3  Score=43.29  Aligned_cols=44  Identities=18%  Similarity=0.284  Sum_probs=36.7

Q ss_pred             cCCcccceEEEEEEeC-CeeeEEeccCCCCCCC-ceeEEEEeeeec
Q psy5567           3 LGLPIGQHLSLSATIN-DEFVARAYTPVTSDEH-HGYMDLVVKSVP   46 (314)
Q Consensus         3 lglpvg~hv~~~~~~~-g~~v~RpYTPvs~~~~-~g~~~llIK~Y~   46 (314)
                      +...+|||+.++.... +....||||..+.+.+ .+.++|+||.+.
T Consensus        23 ~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~   68 (210)
T cd06186          23 FKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKK   68 (210)
T ss_pred             CccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecC
Confidence            3567899999998765 6567799999998776 799999999975

ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional

Probab=89.50  E-value=0.45  Score=47.41  Aligned_cols=42  Identities=29%  Similarity=0.328  Sum_probs=34.4

Q ss_pred             CCcccceEEEEEEe-----------------------------CCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567           4 GLPIGQHLSLSATI-----------------------------NDEFVARAYTPVTSDEHHGYMDLVVKSV   45 (314)
Q Consensus         4 glpvg~hv~~~~~~-----------------------------~g~~v~RpYTPvs~~~~~g~~~llIK~Y   45 (314)
                      ...+||||.++...                             .++...|+|+..|.+.+.++++|.||.+
T Consensus       162 ~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p~~~~~l~~~vr~~  232 (409)
T PRK05464        162 PFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAYSMANYPEEKGIIMLNVRIA  232 (409)
T ss_pred             cccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeeeccCCCCCCCCeEEEEEEEe
Confidence            35689999998752                             2346789999999988889999999985

>PRK08051 fre FMN reductase; Validated

Probab=89.46  E-value=0.48  Score=43.12  Aligned_cols=43  Identities=16%  Similarity=0.254  Sum_probs=34.7

Q ss_pred             CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      ...+|||+.++...   ...||||..|.+.+.+.++|+||..+.+.
T Consensus        29 ~~~pGQ~v~l~~~~---~~~r~ySias~p~~~~~l~~~v~~~~~~~   71 (232)
T PRK08051         29 SFRAGQYLMVVMGE---KDKRPFSIASTPREKGFIELHIGASELNL   71 (232)
T ss_pred             ccCCCCEEEEEcCC---CcceeecccCCCCCCCcEEEEEEEcCCCc
Confidence            46789999999742   24599999998877789999999887653

>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases

Probab=88.25  E-value=0.6  Score=43.24  Aligned_cols=40  Identities=20%  Similarity=0.274  Sum_probs=33.5

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSV   45 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y   45 (314)
                      +...+|||+.++....++   ||||+.+.+.+.+.++|.||..
T Consensus        26 ~~~~pGQ~i~l~~~~~~~---~pySi~s~~~~~~~l~~~Ik~~   65 (253)
T cd06221          26 FTFKPGQFVMLSLPGVGE---APISISSDPTRRGPLELTIRRV   65 (253)
T ss_pred             CCcCCCCEEEEEcCCCCc---cceEecCCCCCCCeEEEEEEeC
Confidence            456789999999875554   8999999888789999999974

Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.

>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=87.30  E-value=0.46  Score=43.83  Aligned_cols=40  Identities=25%  Similarity=0.247  Sum_probs=32.7

Q ss_pred             CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567           4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSV   45 (314)
Q Consensus         4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y   45 (314)
                      ...+|||+.++...+|+  .||||..+.+.+.++++|.||..
T Consensus        26 ~~~pGQf~~l~~~~~~~--~~pySi~s~~~~~~~~~~~vk~~   65 (248)
T cd06219          26 KAKPGQFVIVRADEKGE--RIPLTIADWDPEKGTITIVVQVV   65 (248)
T ss_pred             cCCCCcEEEEEcCCCCC--ccceEeEEEcCCCCEEEEEEEeC
Confidence            45689999999865443  48999999877789999999985

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

Probab=86.93  E-value=0.63  Score=46.30  Aligned_cols=41  Identities=24%  Similarity=0.329  Sum_probs=33.5

Q ss_pred             CcccceEEEEEEe-----------------------------CCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567           5 LPIGQHLSLSATI-----------------------------NDEFVARAYTPVTSDEHHGYMDLVVKSV   45 (314)
Q Consensus         5 lpvg~hv~~~~~~-----------------------------~g~~v~RpYTPvs~~~~~g~~~llIK~Y   45 (314)
                      ..+|||+.++..-                             .|+...|+|+..|.+.+.++++|.||..
T Consensus       159 ~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p~~~~~l~~~vr~~  228 (405)
T TIGR01941       159 FKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAYSMANYPAEKGIIKLNVRIA  228 (405)
T ss_pred             ecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceeecCCCCCCCCCeEEEEEEEe
Confidence            4579999998652                             2456789999999988889999999984

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional

Probab=86.72  E-value=0.86  Score=43.19  Aligned_cols=40  Identities=15%  Similarity=0.308  Sum_probs=31.7

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSV   45 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y   45 (314)
                      +...+|||+.++..-++.   ||||..|.+.+.|+++|+||..
T Consensus        36 ~~~~pGQ~v~l~~~~~~~---~pySias~p~~~~~l~l~Ik~~   75 (289)
T PRK08345         36 FTFKPGQFVQVTIPGVGE---VPISICSSPTRKGFFELCIRRA   75 (289)
T ss_pred             CCcCCCCEEEEEcCCCCc---eeeEecCCCCCCCEEEEEEEeC
Confidence            346789999998754333   7999888777789999999973

>PRK05802 hypothetical protein; Provisional

Probab=84.14  E-value=1.5  Score=42.55  Aligned_cols=40  Identities=10%  Similarity=0.190  Sum_probs=34.5

Q ss_pred             CcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeee
Q psy5567           5 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKS   44 (314)
Q Consensus         5 lpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~   44 (314)
                      ..+||+|+++...++....|||+-.+.+.+.|.++|+||.
T Consensus        95 ~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~~g~l~l~ik~  134 (320)
T PRK05802         95 VYPGSFVFLRNKNSSSFFDVPISIMEADTEENIIKVAIEI  134 (320)
T ss_pred             CCCCceEEEEEcCCCCEeEEeeEecccCCCCCEEEEEEEe
Confidence            4789999999876666677999999888788999999987

>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed

Probab=83.75  E-value=1.1  Score=41.25  Aligned_cols=41  Identities=12%  Similarity=0.204  Sum_probs=34.0

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSV   45 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y   45 (314)
                      +...+|||+.++...++....||||..+.+  .++++|.||..
T Consensus        30 ~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~--~~~l~l~Vk~~   70 (250)
T PRK00054         30 FDMKPGQFVMVWVPGVEPLLERPISISDID--KNEITILYRKV   70 (250)
T ss_pred             cCCCCCcEEEEEeCCCCCcCceeeEEeeeC--CCEEEEEEEEc
Confidence            346789999999876666678999999876  68999999974

>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed

Probab=82.88  E-value=1.1  Score=42.25  Aligned_cols=40  Identities=20%  Similarity=0.229  Sum_probs=32.1

Q ss_pred             CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567           4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSV   45 (314)
Q Consensus         4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y   45 (314)
                      ...+|||+.++....|.  -||||..+.+.+.++++|+||..
T Consensus        27 ~~~pGQfv~l~~~~~~~--~rpySias~~~~~~~i~l~vk~~   66 (281)
T PRK06222         27 KAKPGQFVIVRIDEKGE--RIPLTIADYDREKGTITIVFQAV   66 (281)
T ss_pred             cCCCCeEEEEEeCCCCC--ceeeEeeEEcCCCCEEEEEEEeC
Confidence            35689999999864443  48999998777789999999974

>PLN02292 ferric-chelate reductase

Probab=80.76  E-value=1.7  Score=46.81  Aligned_cols=41  Identities=10%  Similarity=0.101  Sum_probs=33.7

Q ss_pred             CcccceEEEEEEeCCeeeEEeccCCCCCC-CceeEEEEeeee
Q psy5567           5 LPIGQHLSLSATINDEFVARAYTPVTSDE-HHGYMDLVVKSV   45 (314)
Q Consensus         5 lpvg~hv~~~~~~~g~~v~RpYTPvs~~~-~~g~~~llIK~Y   45 (314)
                      ..+|||+.+.....+....||||+.|.+. ++++++|+||.+
T Consensus       352 ~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~  393 (702)
T PLN02292        352 YSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQ  393 (702)
T ss_pred             cCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEcC
Confidence            45799999998655566789999999764 678999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	314
1ndh_A	272	Crystal Structure Of Nadh-Cytochrome B5 Reductase F		9e-50
1ib0_A	274	Crystal Structure Of Rat B5r In Complex With Fad An		2e-48
1qx4_A	274	Structrue Of S127p Mutant Of Cytochrome B5 Reductas		7e-48
1umk_A	275	The Structure Of Human Erythrocyte Nadh-Cytochrome		9e-48
1cne_A	270	Structural Studies On Corn Nitrate Reductase: Refin		1e-33
1cnf_A	270	Structural Studies On Corn Nitrate Reductase: Refin		1e-33
2eix_A	243	The Structure Of Physarum Polycephalum Cytochrome B		1e-26

>pdb|1NDH|A Chain A, Crystal Structure Of Nadh-Cytochrome B5 Reductase From Pig Liver At 2.4 Angstroms Resolution Length = 272

Iteration: 1
 Score =  193 bits (491), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 106/229 (46%), Positives = 131/229 (57%), Gaps = 52/229 (22%)
Query: 86  TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANIL 145
           TL +PD+K PL+L +K  +NHDTR FRF LPS EH+                        
Sbjct: 6   TLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPEHI------------------------ 41
Query: 146 TPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHH 205
                                      LGLP+GQH+ LSA I+   V R YTPV+SD+  
Sbjct: 42  ---------------------------LGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDK 74
Query: 206 GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVS 265
           G++DLV+KVYFK+ HPKFP GGKMSQ+LE+MK+G+ I   GP G L Y G G+F IR   
Sbjct: 75  GFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRP-D 133
Query: 266 KKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           KK  P    V  + MIAGGTGITPMLQ++R I KDP D+T   L+FANQ
Sbjct: 134 KKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ 182

>pdb|1IB0|A Chain A, Crystal Structure Of Rat B5r In Complex With Fad And Nad Length = 274

Iteration: 1
 Score =  189 bits (480), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 105/229 (45%), Positives = 129/229 (56%), Gaps = 52/229 (22%)
Query: 86  TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANIL 145
           TL +PD+K PL+L +K  ++HDTR FRF LPS +H+                        
Sbjct: 8   TLENPDIKYPLRLIDKEILSHDTRRFRFALPSPQHI------------------------ 43
Query: 146 TPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHH 205
                                      LGLPIGQH+ LS  I+   V R YTPV+SD+  
Sbjct: 44  ---------------------------LGLPIGQHIYLSTRIDGNLVIRPYTPVSSDDDK 76
Query: 206 GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVS 265
           G++DLVVKVYFK  HPKFP GGKMSQ+LENM +G+ I   GP G L Y G G+F IRA  
Sbjct: 77  GFVDLVVKVYFKETHPKFPAGGKMSQYLENMNIGDTIEFRGPNGLLVYQGKGKFAIRA-D 135
Query: 266 KKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           KK  P    V  + MIAGGTGITPMLQ++R + KDP D+T   L+FANQ
Sbjct: 136 KKSNPVVRTVKSVGMIAGGTGITPMLQVIRAVLKDPNDHTVCYLLFANQ 184

>pdb|1QX4|A Chain A, Structrue Of S127p Mutant Of Cytochrome B5 Reductase Length = 274

Iteration: 1
 Score =  187 bits (474), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 104/229 (45%), Positives = 128/229 (55%), Gaps = 52/229 (22%)
Query: 86  TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANIL 145
           TL +PD+K PL+L +K  ++HDTR FRF LPS +H+                        
Sbjct: 8   TLENPDIKYPLRLIDKEILSHDTRRFRFALPSPQHI------------------------ 43
Query: 146 TPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHH 205
                                      LGLPIGQH+ LS  I+   V R YTPV+SD+  
Sbjct: 44  ---------------------------LGLPIGQHIYLSTRIDGNLVIRPYTPVSSDDDK 76
Query: 206 GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVS 265
           G++DLVVKVYFK  HPKFP GGKM Q+LENM +G+ I   GP G L Y G G+F IRA  
Sbjct: 77  GFVDLVVKVYFKETHPKFPAGGKMPQYLENMNIGDTIEFRGPNGLLVYQGKGKFAIRA-D 135
Query: 266 KKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           KK  P    V  + MIAGGTGITPMLQ++R + KDP D+T   L+FANQ
Sbjct: 136 KKSNPVVRTVKSVGMIAGGTGITPMLQVIRAVLKDPNDHTVCYLLFANQ 184

>pdb|1UMK|A Chain A, The Structure Of Human Erythrocyte Nadh-Cytochrome B5 Reductase Length = 275

Iteration: 1
 Score =  187 bits (474), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 102/229 (44%), Positives = 130/229 (56%), Gaps = 52/229 (22%)
Query: 86  TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANIL 145
           TL  PD+K PL+L ++  I+HDTR FRF LPS +H+                        
Sbjct: 9   TLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHI------------------------ 44
Query: 146 TPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHH 205
                                      LGLP+GQH+ LSA I+   V R YTP++SD+  
Sbjct: 45  ---------------------------LGLPVGQHIYLSARIDGNLVVRPYTPISSDDDK 77
Query: 206 GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVS 265
           G++DLV+KVYFK+ HPKFP GGKMSQ+LE+M++G+ I   GP G L Y G G+F IR   
Sbjct: 78  GFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRP-D 136
Query: 266 KKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           KK  P    V  + MIAGGTGITPMLQ++R I KDP D+T   L+FANQ
Sbjct: 137 KKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ 185

>pdb|1CNE|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined Structure Of The Cytochrome B Reductase Fragment At 2.5 Angstroms, Its Adp Complex And An Active Site Mutant And Modeling Of The Cytochrome B Domain Length = 270

Iteration: 1
 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 117/230 (50%), Gaps = 59/230 (25%)
Query: 86  TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANIL 145
            L +P  ++  +L  K E++ D R FRF LPS + V                        
Sbjct: 5   ALSNPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQV------------------------ 40
Query: 146 TPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHH 205
                                      LGLPIG+H+ + ATI  +   RAYTP +  +  
Sbjct: 41  ---------------------------LGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEI 73
Query: 206 GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVS 265
           G+ DL+VKVYFKN HPKFP+GG M+Q+L+++ VG  I+V GP G + Y G G F I    
Sbjct: 74  GHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQ 133
Query: 266 KKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD-PTDNTKMSLIFANQ 314
           +          +L+MI GG+GITPM Q+++ + +D P D+T+M L++AN+
Sbjct: 134 R-------NARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANR 176

>pdb|1CNF|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined Structure Of The Cytochrome B Reductase Fragment At 2.5 Angstroms, Its Adp Complex And An Active Site Mutant And Modeling Of The Cytochrome B Domain Length = 270

Iteration: 1
 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 117/230 (50%), Gaps = 59/230 (25%)
Query: 86  TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANIL 145
            L +P  ++  +L  K E++ D R FRF LPS + V                        
Sbjct: 5   ALSNPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQV------------------------ 40
Query: 146 TPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHH 205
                                      LGLPIG+H+ + ATI  +   RAYTP +  +  
Sbjct: 41  ---------------------------LGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEI 73
Query: 206 GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVS 265
           G+ DL+VKVYFKN HPKFP+GG M+Q+L+++ VG  I+V GP G + Y G G F I    
Sbjct: 74  GHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQ 133
Query: 266 KKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD-PTDNTKMSLIFANQ 314
           +          +L+MI GG+GITPM Q+++ + +D P D+T+M L++AN+
Sbjct: 134 R-------NARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANR 176

>pdb|2EIX|A Chain A, The Structure Of Physarum Polycephalum Cytochrome B5 Reductase Length = 243

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 108/226 (47%), Gaps = 77/226 (34%)
Query: 88  VDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTP 147
           ++P+      L+EK  INH+TR FRF L   E V+                         
Sbjct: 6   LNPNEYKKFMLREKQIINHNTRLFRFNLHHPEDVV------------------------- 40
Query: 148 FQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGY 207
                                     GLPIGQH+S+ AT++ + + R YTPV+SD+  GY
Sbjct: 41  --------------------------GLPIGQHMSVKATVDGKEIYRPYTPVSSDDEKGY 74
Query: 208 MDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKK 267
            DL++KVY K         G+MSQ+++++  G+ + V GP+G+  Y  N           
Sbjct: 75  FDLIIKVYEK---------GQMSQYIDHLNPGDFLQVRGPKGQFDYKPN----------- 114
Query: 268 DPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFAN 313
                  V ++ MIAGGTGITPMLQ+ R I K+P + T ++LIFAN
Sbjct: 115 ------MVKEMGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFAN 154

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	314
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	3e-72
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	1e-12
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	8e-63
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	4e-15
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	2e-62
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	7e-12
1tvc_A	250	Methane monooxygenase component C, methane monooxy	8e-18
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	3e-16
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	4e-14
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	5e-14
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	1e-13
4fk8_A	271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	5e-13
2qdx_A	257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	8e-13
1gvh_A	396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	2e-11
1cqx_A	403	Flavohemoprotein; globin fold, six-stranded antipa	2e-11
4eh1_A	243	Flavohemoprotein; structural genomics, niaid, nati	7e-11
2bgi_A	272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	1e-09
1ep3_B	262	Dihydroorotate dehydrogenase B (PYRK subunit); het	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	2e-04
2gpj_A	252	Siderophore-interacting protein; structural genomi	2e-04

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A* Length = 275

 Score =  223 bits (570), Expect = 3e-72
 Identities = 102/235 (43%), Positives = 129/235 (54%), Gaps = 52/235 (22%)

Query: 80  SKKELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKN 139
                 TL  PD+K PL+L ++  I+HDTR FRF LPS +H                   
Sbjct: 3   RSTPAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQH------------------- 43

Query: 140 PIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPV 199
                                            LGLP+GQH+ LSA I+   V R YTP+
Sbjct: 44  --------------------------------ILGLPVGQHIYLSARIDGNLVVRPYTPI 71

Query: 200 TSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEF 259
           +SD+  G++DLV+KVYFK+ HPKFP GGKMSQ+LE+M++G+ I   GP G L Y G G+F
Sbjct: 72  SSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKF 131

Query: 260 HIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
            IR   KK  P    V  + MIAGGTGITPMLQ++R I KDP D+T   L+FANQ
Sbjct: 132 AIRP-DKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ 185

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A* Length = 275

 Score = 65.9 bits (161), Expect = 1e-12
 Identities = 23/42 (54%), Positives = 32/42 (76%)

Query: 2  WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVK 43
           LGLP+GQH+ LSA I+   V R YTP++SD+  G++DLV+K
Sbjct: 44 ILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIK 85

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum} Length = 243

 Score =  198 bits (505), Expect = 8e-63
 Identities = 74/230 (32%), Positives = 109/230 (47%), Gaps = 77/230 (33%)

Query: 85  KTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANI 144
           +  ++P+      L+EK  INH+TR FRF L   E V+G                     
Sbjct: 3   EPALNPNEYKKFMLREKQIINHNTRLFRFNLHHPEDVVG--------------------- 41

Query: 145 LTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEH 204
                                         LPIGQH+S+ AT++ + + R YTPV+SD+ 
Sbjct: 42  ------------------------------LPIGQHMSVKATVDGKEIYRPYTPVSSDDE 71

Query: 205 HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAV 264
            GY DL++KVY         + G+MSQ+++++  G+ + V GP+G+  Y  N        
Sbjct: 72  KGYFDLIIKVY---------EKGQMSQYIDHLNPGDFLQVRGPKGQFDYKPN-------- 114

Query: 265 SKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
                     V ++ MIAGGTGITPMLQ+ R I K+P + T ++LIFAN 
Sbjct: 115 ---------MVKEMGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFANV 155

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum} Length = 243

 Score = 72.2 bits (178), Expect = 4e-15
 Identities = 22/44 (50%), Positives = 33/44 (75%)

Query: 3  LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVP 46
          +GLPIGQH+S+ AT++ + + R YTPV+SD+  GY DL++K   
Sbjct: 40 VGLPIGQHMSVKATVDGKEIYRPYTPVSSDDEKGYFDLIIKVYE 83

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A* Length = 270

 Score =  198 bits (504), Expect = 2e-62
 Identities = 79/231 (34%), Positives = 116/231 (50%), Gaps = 59/231 (25%)

Query: 85  KTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANI 144
             L +P  ++  +L  K E++ D R FRF LPS +                         
Sbjct: 4   PALSNPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQ------------------------ 39

Query: 145 LTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEH 204
                                       LGLPIG+H+ + ATI  +   RAYTP +  + 
Sbjct: 40  ---------------------------VLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDE 72

Query: 205 HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAV 264
            G+ DL+VKVYFKN HPKFP+GG M+Q+L+++ VG  I+V GP G + Y G G F I   
Sbjct: 73  IGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGK 132

Query: 265 SKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD-PTDNTKMSLIFANQ 314
            +          +L+MI GG+GITPM Q+++ + +D P D+T+M L++AN+
Sbjct: 133 QR-------NARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANR 176

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A* Length = 270

 Score = 63.7 bits (155), Expect = 7e-12
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 2  WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVK 43
           LGLPIG+H+ + ATI  +   RAYTP +  +  G+ DL+VK
Sbjct: 40 VLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLVK 81

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2 Length = 250

 Score = 80.4 bits (199), Expect = 8e-18
 Identities = 36/228 (15%), Positives = 70/228 (30%), Gaps = 78/228 (34%)

Query: 85  KTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANI 144
           +           ++     ++ +T  F  +    E                         
Sbjct: 2   RISFGEVGSFEAEVVGLNWVSSNTVQFLLQKRPDE------------------------- 36

Query: 145 LTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEH 204
                                    F     P GQ + L  TI    V+R+Y+P      
Sbjct: 37  ------------------CGNRGVKF----EP-GQFMDL--TIPGTDVSRSYSPANLPNP 71

Query: 205 HGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRA 263
            G ++ +++V            G+ S +L  + +VG+ ++V GP G         F ++ 
Sbjct: 72  EGRLEFLIRVL---------PEGRFSDYLRNDARVGQVLSVKGPLG--------VFGLKE 114

Query: 264 VSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIF 311
                            +AGGTG+ P++ +VR + +    N +  + F
Sbjct: 115 RGMAP---------RYFVAGGTGLAPVVSMVRQMQEWTAPN-ETRIYF 152

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A* Length = 248

 Score = 75.8 bits (187), Expect = 3e-16
 Identities = 38/164 (23%), Positives = 57/164 (34%), Gaps = 33/164 (20%)

Query: 151 VSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDL 210
           V  W   + S     P   F       GQ   L   I+ E V RAY+ V +   +  +  
Sbjct: 12  VQNWTDALFSLTVHAPVLPFT-----AGQFTKLGLEIDGERVQRAYSYV-NSPDNPDL-- 63

Query: 211 VVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPP 270
             + Y   V       GK+S  L  +K G+ + V              F +      D  
Sbjct: 64  --EFYLVTV-----PDGKLSPRLAALKPGDEVQVVSEAAG--------FFVL-----DEV 103

Query: 271 TNLKVTQLSMIAGGTGITPMLQLVRHI-TKDPTDNTKMSLIFAN 313
            + +   L M+A GT I P L ++R     D      + L+ A 
Sbjct: 104 PHCE--TLWMLATGTAIGPYLSILRLGKDLDRFK--NLVLVHAA 143

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 338

 Score = 70.9 bits (174), Expect = 4e-14
 Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 37/156 (23%)

Query: 158 VVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFK 217
            +   + +P  HF    L  GQ++++  T+      R+Y+  +S   +     VV+    
Sbjct: 127 DIQLDDGQPDIHF----LA-GQYVNV--TLPGTTETRSYS-FSSQPGNRLTGFVVRNV-- 176

Query: 218 NVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVT 276
                    GKMS++L    K G+ ++ +GP G         F++R V +   P      
Sbjct: 177 -------PQGKMSEYLSVQAKAGDKMSFTGPFG--------SFYLRDVKR---P------ 212

Query: 277 QLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFA 312
            + M+AGGTGI P L +++ + +  +++  + L+F 
Sbjct: 213 -VLMLAGGTGIAPFLSMLQVLEQKGSEH-PVRLVFG 246

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis} Length = 290

 Score = 70.0 bits (171), Expect = 5e-14
 Identities = 33/226 (14%), Positives = 69/226 (30%), Gaps = 47/226 (20%)

Query: 93  KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVS 152
           +   ++     ++   + F  +LP  E +        + +         A I  P   + 
Sbjct: 9   EWECEVLSNKNVSTFIKEFVVKLPEGETM--------NFKSGS-----YAQIKIPKYNIR 55

Query: 153 FWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVV 212
           +      +  + +  F   W  +            N+E   RAY+          + L V
Sbjct: 56  Y------ADYDIQDRFRGDWDKMDAWSLTC----KNEEETVRAYSMANYPAEGNIITLNV 105

Query: 213 KVYFKNVHPKFPD------GGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSK 266
           ++                  G  S ++ ++K G+ + +SGP G                 
Sbjct: 106 RIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDKVMMSGPYGDFHI-----------QD 154

Query: 267 KDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFA 312
            D         +  I GG G+ P+   + H+ +      K+S  + 
Sbjct: 155 TDAE-------MLYIGGGAGMAPLRAQILHLFRTLKTGRKVSYWYG 193

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 Length = 232

 Score = 68.4 bits (168), Expect = 1e-13
 Identities = 22/150 (14%), Positives = 53/150 (35%), Gaps = 36/150 (24%)

Query: 163 ESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPK 222
             +  F F       GQ+L +     DE   R ++  ++ +  G+++L +          
Sbjct: 23  VPDAAFSF----RA-GQYLMVVM---DERDKRPFSMASTPDEKGFIELHIGAS------- 67

Query: 223 FPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMI 281
             +    ++ + + +     I V  P G        E  +R   ++          + +I
Sbjct: 68  --EINLYAKAVMDRILKDHQIVVDIPHG--------EAWLRDDEERP---------MILI 108

Query: 282 AGGTGITPMLQLVRHITKDPTDNTKMSLIF 311
           AGGTG +    ++        +   +++ +
Sbjct: 109 AGGTGFSYARSILLTALARNPNR-DITIYW 137

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A* Length = 271

 Score = 67.1 bits (164), Expect = 5e-13
 Identities = 25/161 (15%), Positives = 55/161 (34%), Gaps = 32/161 (19%)

Query: 154 WCSRVVS-APESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVV 212
           W   + S     +    F       G+   +   ++ + + RAY+ V S  +  ++    
Sbjct: 30  WTDTLFSFTCTRDQALRF----NN-GEFTMVGLEVDGKPLTRAYSIV-SPNYEEHL---- 79

Query: 213 KVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTN 272
           + +   V       G ++  L+++KVG+P+ +            G      +        
Sbjct: 80  EFFSIKV-----QNGPLTSRLQHLKVGDPVLIGKKPT-------GTLVADNLLPGKTLW- 126

Query: 273 LKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFAN 313
                  M++ GTG+ P + ++R          K+ L    
Sbjct: 127 -------MLSTGTGLAPFMSIIRDP-DIYERFDKVVLTHTC 159

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* Length = 257

 Score = 66.3 bits (162), Expect = 8e-13
 Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 31/149 (20%)

Query: 150 RVSFWCSRVVS-APESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYM 208
            V  W   + S      P   F       GQ + +   ++   + RAY+  + +      
Sbjct: 10  SVHHWNDTLFSFKTTRNPGLRF----KT-GQFVMIGLEVDGRPLMRAYSIASPNYEEHLE 64

Query: 209 DLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKD 268
              +KV            G ++  L+++K G+ + VS               +       
Sbjct: 65  FFSIKV----------PDGPLTSRLQHLKEGDELMVSRK--------PTGTLVH---DDL 103

Query: 269 PPTNLKVTQLSMIAGGTGITPMLQLVRHI 297
            P       L +++ GTG+ P L +++  
Sbjct: 104 LPGK----HLYLLSTGTGMAPFLSVIQDP 128

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 Length = 396

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 28/163 (17%), Positives = 57/163 (34%), Gaps = 36/163 (22%)

Query: 155 CSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDE--FVARAYTPVTSDEHHGYMDLVV 212
            S  +   +      +     P GQ+L +            R Y+     +  GY     
Sbjct: 168 TSFELEPVDGGAVAEY----RP-GQYLGVWLKPEGFPHQEIRQYSLTRKPDGKGY----- 217

Query: 213 KVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPT 271
                 +  K  +GG++S +L  +  VG+ + +  P G        +F +          
Sbjct: 218 -----RIAVKREEGGQVSNWLHNHANVGDVVKLVAPAG--------DFFMAVADDTP--- 261

Query: 272 NLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
                 +++I+ G G TPML ++  + K      +++   A +
Sbjct: 262 ------VTLISAGVGQTPMLAMLDTLAKAGHT-AQVNWFHAAE 297

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A* Length = 403

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 30/151 (19%)

Query: 155 CSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDE--FVARAYTPVTSDEHHGYMDLVV 212
            S ++   +  P  +F     P GQ+ S++  +        R Y+         Y  + V
Sbjct: 170 TSFILEPADGGPVVNF----EP-GQYTSVAIDVPALGLQQIRQYSLSDMPNGRTY-RISV 223

Query: 213 KVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPT 271
           K             G +S  L +++ VG+ + ++ P G         FHI   +K     
Sbjct: 224 K----REGGGPQPPGYVSNLLHDHVNVGDQVKLAAPYG--------SFHIDVDAKTP--- 268

Query: 272 NLKVTQLSMIAGGTGITPMLQLVRHITKDPT 302
                 + +I+GG G+TPM+ +++   + P 
Sbjct: 269 ------IVLISGGVGLTPMVSMLKVALQAPP 293

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor} Length = 243

 Score = 60.3 bits (147), Expect = 7e-11
 Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 35/155 (22%)

Query: 151 VSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDE--FVARAYTPVTSDEHHGYM 208
            SF    V+   +      +     P GQ++ +  T         R Y+   +     Y 
Sbjct: 19  TSF----VLVPADGGAVLDY----QP-GQYIGIEVTPEGSDYREIRQYSLSHASNGREY- 68

Query: 209 DLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKK 267
               ++  K       + G +S +L  N+KVG+ + +  P G        +F      + 
Sbjct: 69  ----RISVKREGVGSDNPGLVSHYLHNNVKVGDSVKLYAPAG--------DFFYVERERP 116

Query: 268 DPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT 302
                     + +I+ G G TPM  ++  + K   
Sbjct: 117 ----------VVLISAGVGATPMQAILHTLAKQNK 141

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* Length = 272

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 29/162 (17%), Positives = 53/162 (32%), Gaps = 33/162 (20%)

Query: 154 WCSRVVS-APESEPPFHFAWLGLPIGQHLSLSAT-INDEFVARAYTPVTSDEHHGYMDLV 211
           W   + S          F       G+ + +     N + + RAY+ + S      ++  
Sbjct: 27  WTDTLFSFRVTRPQTLRF----RS-GEFVMIGLLDDNGKPIMRAYS-IASPAWDEELEFY 80

Query: 212 VKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPT 271
                          G ++  L+++KVGE I +            G   I A+       
Sbjct: 81  SIKV---------PDGPLTSRLQHIKVGEQIILRPKPV-------GTLVIDALLPGKR-- 122

Query: 272 NLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFAN 313
                 L  +A GTGI P   L+R   +      ++ ++ A 
Sbjct: 123 ------LWFLATGTGIAPFASLMREP-EAYEKFDEVIMMHAC 157

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B* Length = 262

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 24/122 (19%)

Query: 178 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMK 237
           GQ L L+       + R  +  + D+      ++ ++  +            +  L  ++
Sbjct: 37  GQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIGDE---------TTGTYKLSKLE 87

Query: 238 VGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHI 297
            G  ++V GP      LGNG F +  V+  D           +I GG G+ P+ +L + +
Sbjct: 88  SGAKVDVMGP------LGNG-FPVAEVTSTDKIL--------IIGGGIGVPPLYELAKQL 132

Query: 298 TK 299
            K
Sbjct: 133 EK 134

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 4e-05
 Identities = 54/360 (15%), Positives = 101/360 (28%), Gaps = 117/360 (32%)

Query: 15  ATINDEFVARAYTPVTSDEHHG-------------YMDLVVKSVPSILVGVGLIVVVGFI 61
             + D   A   T ++ D H               Y+D   + +P  ++      +   I
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS--I 332

Query: 62  ISA--------IQESKSKKKDKASRSSKKELKTLVDP---------------DVKVPLKL 98
           I+             K    DK +   +  L  L +P                  +P  L
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 99  -----KEKIE---------------INHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKK 138
                 + I+               +    +     +PS    L  ++    A HR    
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS--- 448

Query: 139 NPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTP 198
                I+  +     + S  +  P  +  F+       IG HL                 
Sbjct: 449 -----IVDHYNIPKTFDSDDLIPPYLDQYFYSH-----IGHHLK---------------- 482

Query: 199 VTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKV---GEPINVSGPRGRLAYLG 255
             + EH   M L   V+  +             FLE  K+       N SG    L  L 
Sbjct: 483 --NIEHPERMTLFRMVFL-DFR-----------FLEQ-KIRHDSTAWNASG--SILNTLQ 525

Query: 256 NGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP-TDNTKMSLIFANQ 314
             +F+   +   DP     V  +        +  + ++  ++     TD  +++L+  ++
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAI--------LDFLPKIEENLICSKYTDLLRIALMAEDE 577

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 321

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 30/120 (25%)

Query: 178 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENM 236
           G +L++   + +    R Y+     +      + VK        +  +G   S    ++ 
Sbjct: 42  GANLTV--AVPNGSR-RTYSLCNDSQERNRYVIAVK--------RDSNGRGGSISFIDDT 90

Query: 237 KVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRH 296
             G+ + VS PR         +  I                  ++AGG GITPML + R 
Sbjct: 91  SEGDAVEVSLPRNEFPLDKRAKSFI------------------LVAGGIGITPMLSMARQ 132

>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens} Length = 252

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 20/155 (12%), Positives = 38/155 (24%), Gaps = 41/155 (26%)

Query: 145 LTP-FQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEF-VARAYTPVTSD 202
           +TP   R++                 F         ++ L      E  + R YT     
Sbjct: 19  ITPHMLRITL---------GGAGLAGFPADQ--ESAYIKLLFPQAGERPLMRTYTIRQQR 67

Query: 203 EHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIR 262
           +    +D V               G  S + +  +VGE I + GP  +            
Sbjct: 68  DDEIDVDFV----------LHDTDGPASSWAKTAQVGELIQIGGPGLKKL---------- 107

Query: 263 AVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHI 297
                            +    T +  +   +  +
Sbjct: 108 ------INFE--ADWFLLAGDMTALPAISVNLAKL 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	314
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	99.97
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	99.97
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	99.96
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	99.93
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	99.93
4eh1_A	243	Flavohemoprotein; structural genomics, niaid, nati	99.93
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	99.93
1cqx_A	403	Flavohemoprotein; globin fold, six-stranded antipa	99.92
1gvh_A	396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	99.92
3vo2_A	310	Putative uncharacterized protein; rossmann fold, o	99.92
1tvc_A	250	Methane monooxygenase component C, methane monooxy	99.92
1ep3_B	262	Dihydroorotate dehydrogenase B (PYRK subunit); het	99.92
2qdx_A	257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	99.92
4fk8_A	271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	99.92
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	99.91
3lo8_A	311	Ferredoxin--NADP reductase; electron transport, ox	99.91
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	99.91
2bgi_A	272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	99.91
4g1v_A	399	Flavohemoglobin; three domains: globin fold, antip	99.91
1fnb_A	314	Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(	99.9
2gpj_A	252	Siderophore-interacting protein; structural genomi	99.9
2b5o_A	402	FNR, ferredoxin--NADP reductase; complex with FAD,	99.89
3jqq_A	316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	99.89
2bmw_A	304	Ferredoxin--NADP reductase; oxidoreductase, flavop	99.89
2rc5_A	314	Ferredoxin-NADP reductase; FAD, oxidoreductase; HE	99.89
1ddg_A	374	Sulfite reductase (NADPH) flavoprotein alpha- comp	99.72
4dql_A	393	Bifunctional P-450/NADPH-P450 reductase; rossmann	99.64
1f20_A	435	Nitric-oxide synthase; nitric-xoide synthase, redu	99.56
3qfs_A	458	CPR, P450R, NADPH--cytochrome P450 reductase; flav	99.51
2bpo_A	682	CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-	99.5
3qe2_A	618	CPR, P450R, NADPH--cytochrome P450 reductase; cypo	99.49
1tll_A	688	Nitric-oxide synthase, brain; reductase module, FM	99.48
2qtl_A	539	MSR;, methionine synthase reductase; alpha-beta-al	99.48
3lrx_A	158	Putative hydrogenase; alpha-beta protein, structur	99.08
3lyu_A	142	Putative hydrogenase; the C-terminal has AN alpha-	98.81
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	97.44
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	97.04
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	96.83
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	96.51
2qdx_A	257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	96.47
2bgi_A	272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	96.24
4fk8_A	271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	96.07
1tvc_A	250	Methane monooxygenase component C, methane monooxy	95.62
1ep3_B	262	Dihydroorotate dehydrogenase B (PYRK subunit); het	95.59
4eh1_A	243	Flavohemoprotein; structural genomics, niaid, nati	95.29
1gvh_A	396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	95.13
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	95.09
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	95.08
1cqx_A	403	Flavohemoprotein; globin fold, six-stranded antipa	94.97
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	94.38
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	94.03
4g1v_A	399	Flavohemoglobin; three domains: globin fold, antip	93.01
3lo8_A	311	Ferredoxin--NADP reductase; electron transport, ox	92.54
3vo2_A	310	Putative uncharacterized protein; rossmann fold, o	92.38
2gpj_A	252	Siderophore-interacting protein; structural genomi	89.59
2rc5_A	314	Ferredoxin-NADP reductase; FAD, oxidoreductase; HE	81.87
1fnb_A	314	Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(	81.6
2b5o_A	402	FNR, ferredoxin--NADP reductase; complex with FAD,	80.14

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*

Probab=99.97  E-value=3.4e-31  Score=243.15  Aligned_cols=182  Identities=56%  Similarity=0.982  Sum_probs=153.5

Q ss_pred             ccccccccCCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeecc
Q psy5567          81 KKELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVS  160 (314)
Q Consensus        81 ~~~~~~~l~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (314)
                      +++.++++||..+++++|++++.++++++.|+|++++.....                                      
T Consensus         4 ~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~--------------------------------------   45 (275)
T 1umk_A            4 STPAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHIL--------------------------------------   45 (275)
T ss_dssp             -CCCBSCCCTTCCEEEEEEEEEECSSSEEEEEEECSSTTCBC--------------------------------------
T ss_pred             cCCCccccCCCccEEEEEEEEEEcCCCeEEEEEEcCCccccc--------------------------------------
Confidence            345668999999999999999999999999999987653222                                      


Q ss_pred             CCCCCCCcccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCC
Q psy5567         161 APESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGE  240 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd  240 (314)
                                   .+.||||+.|.++.++....|+||+++.+.+.+.++|+||++..+.+++++++|.+|+||+++++||
T Consensus        46 -------------~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd  112 (275)
T 1umk_A           46 -------------GLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGD  112 (275)
T ss_dssp             -------------CCCTTCEEEEEEEETTEEEEEEECCSSCTTCCSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTTC
T ss_pred             -------------CCCCCcEEEEEEeeCCcEEEeccccCCccCCCCeEEEEEEEeccCcccccCCCChhHHHHhcCCCCC
Confidence                         6899999999998778788999999999887899999999886666777778899999999999999


Q ss_pred             eEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         241 PINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       241 ~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      .|.++||+|.|.+.+||.|.+++ +.+.+.+....++++|||||||||||++|++++..+..+..+++|+|++|
T Consensus       113 ~v~v~gP~G~~~~~~~~~f~l~~-~~~~~~~~~~~~~~vliagGtGIaP~~~~l~~l~~~~~~~~~v~l~~~~r  185 (275)
T 1umk_A          113 TIEFRGPSGLLVYQGKGKFAIRP-DKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ  185 (275)
T ss_dssp             EEEEEEEECSEEEEETTEEEECS-STTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCTTCCCEEEEEEEES
T ss_pred             EEEEEcCccceEecCCccccccc-cccccccccCCceEEEEecCccHhHHHHHHHHHHhCCCCCcEEEEEEEcC
Confidence            99999999999998888888864 11111112246899999999999999999999987643468999999987

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*

Probab=99.97  E-value=1.5e-29  Score=231.18  Aligned_cols=171  Identities=46%  Similarity=0.857  Sum_probs=143.8

Q ss_pred             cccCCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCC
Q psy5567          86 TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESE  165 (314)
Q Consensus        86 ~~l~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      .+.+|..+.+++|++++.++++++.|+|+.++.....                                           
T Consensus         5 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~-------------------------------------------   41 (270)
T 2cnd_A            5 ALSNPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQVL-------------------------------------------   41 (270)
T ss_dssp             ------CCEEEEEEEEEEEETTEEEEEEECSSTTCCC-------------------------------------------
T ss_pred             ccCCCCceEEEEEEEEEEeCCCeEEEEEECCCCcccc-------------------------------------------
Confidence            3448888999999999999999999999988653222                                           


Q ss_pred             CCcccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEE
Q psy5567         166 PPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVS  245 (314)
Q Consensus       166 ~~~~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~  245 (314)
                              .+.||||+.|.++.++....|+||+++.+.+.+.++|+||++.++.|++++++|.+|+||+++++||.|.++
T Consensus        42 --------~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~l~vk~~~~~~~~~~~~~G~~s~~l~~l~~Gd~v~v~  113 (270)
T 2cnd_A           42 --------GLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVK  113 (270)
T ss_dssp             --------CCCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECCCSSCBTTBTTCCHHHHHHHHCCTTCEEEEE
T ss_pred             --------CCCCCCEEEEEeeeCCcEEEEeeccCCCccCCCEEEEEEEEeccCcccccCCCCchhhHHhcCCCCCEEEEE
Confidence                    789999999998877878899999999988779999999988666677777789999999999999999999


Q ss_pred             ccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCC-CCCccEEEEEEeC
Q psy5567         246 GPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP-TDNTKMSLIFANQ  314 (314)
Q Consensus       246 GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~-~~~~~v~Li~~~r  314 (314)
                      ||+|.|.|.++|.|.++..       ....++++|||||||||||++|++++..+. .+..+++|+|++|
T Consensus       114 gP~G~~~~~~~g~f~l~~~-------~~~~~~~vliagGtGiaP~~~~l~~l~~~~~~~~~~v~l~~~~r  176 (270)
T 2cnd_A          114 GPLGHVEYTGRGSFVINGK-------QRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANR  176 (270)
T ss_dssp             EEECSEECCSSSCEEETTE-------EECCSEEEEEEEGGGHHHHHHHHHHHHHTTTTCCCEEEEEEEES
T ss_pred             CCcccceeccccceeccCC-------cccCCEEEEEeccccHHHHHHHHHHHHhcCCCCCcEEEEEEEcC
Confidence            9999999998889998740       013689999999999999999999998762 2357999999987

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}

Probab=99.96  E-value=1.5e-28  Score=221.30  Aligned_cols=153  Identities=48%  Similarity=0.867  Sum_probs=133.4

Q ss_pred             ccccCCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCC
Q psy5567          85 KTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPES  164 (314)
Q Consensus        85 ~~~l~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (314)
                      ++.++|..|.+++|++++.++++++.|+|++++.....                                          
T Consensus         3 ~~~l~~~~~~~~~v~~~~~~t~~~~~~~l~~~~~~~~~------------------------------------------   40 (243)
T 2eix_A            3 EPALNPNEYKKFMLREKQIINHNTRLFRFNLHHPEDVV------------------------------------------   40 (243)
T ss_dssp             CCSCCSSSCEEEEEEEEEEEETTEEEEEEECSSTTCCC------------------------------------------
T ss_pred             cccCCCCceEEEEEEEEEEeCCCeEEEEEEcCCCCccc------------------------------------------
Confidence            46789999999999999999999999999987653222                                          


Q ss_pred             CCCcccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEE
Q psy5567         165 EPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINV  244 (314)
Q Consensus       165 ~~~~~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v  244 (314)
                               .+.||||+.|.++.++....|+|||++.+.+.+.++|+||++         ++|.+|+||+++++||.|.+
T Consensus        41 ---------~~~pGq~v~l~~~~~g~~~~R~ysi~s~~~~~~~~~l~vk~~---------~~G~~S~~l~~l~~Gd~v~v  102 (243)
T 2eix_A           41 ---------GLPIGQHMSVKATVDGKEIYRPYTPVSSDDEKGYFDLIIKVY---------EKGQMSQYIDHLNPGDFLQV  102 (243)
T ss_dssp             ---------CCCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECC---------TTCHHHHHHHTCCTTCEEEE
T ss_pred             ---------CcCCceEEEEEEeeCCCEEEeeeeecCCCCCCCEEEEEEEEc---------CCCCcchHhhcCCCCCEEEE
Confidence                     689999999999877777899999999988789999999987         78999999999999999999


Q ss_pred             EccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         245 SGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       245 ~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      +||+|.        |.++.         ...++++|||||||||||++|++++..++.+..+++|+|++|
T Consensus       103 ~gP~G~--------f~~~~---------~~~~~~vliagG~GiaP~~~~l~~l~~~~~~~~~v~l~~~~r  155 (243)
T 2eix_A          103 RGPKGQ--------FDYKP---------NMVKEMGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFANV  155 (243)
T ss_dssp             EEEECS--------CCCCT---------TSSSEEEEEEEGGGHHHHHHHHHHHHTCTTCCCEEEEEEEEE
T ss_pred             ECCeEE--------EEeCC---------CCCcEEEEEecCccHHHHHHHHHHHHhCCCCCcEEEEEEEcC
Confidence            999995        44433         236899999999999999999999987643467999999986

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}

Probab=99.93  E-value=4.5e-25  Score=203.53  Aligned_cols=157  Identities=20%  Similarity=0.334  Sum_probs=123.8

Q ss_pred             ccCCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCC
Q psy5567          87 LVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEP  166 (314)
Q Consensus        87 ~l~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (314)
                      ++++ ...+++|++++.+++++++|+|+.++... .                                            
T Consensus         4 ~~~~-~~~~~~V~~~~~~t~~~~~l~l~~~~~~~-~--------------------------------------------   37 (290)
T 2r6h_A            4 VFGV-KEWECEVLSNKNVSTFIKEFVVKLPEGET-M--------------------------------------------   37 (290)
T ss_dssp             --CC-CEEEEEEEEEEESSSSEEEEEEECSTTCC-C--------------------------------------------
T ss_pred             cccc-eEEEEEEEEeeecCCCeEEEEEEcCCCCc-c--------------------------------------------
Confidence            3444 46789999999999999999999876421 1                                            


Q ss_pred             CcccccCCCCCCcEEEEEeee-----------------------------CCceeeeeeeeecCCCCCceEEEEEEEEee
Q psy5567         167 PFHFAWLGLPIGQHLSLSATI-----------------------------NDEFVARAYTPVTSDEHHGYMDLVVKVYFK  217 (314)
Q Consensus       167 ~~~~~~~~~~~GQ~v~l~~~~-----------------------------~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~  217 (314)
                             .+.||||+.|.++.                             ++....|+||+++.+.+.+.++|+||++.+
T Consensus        38 -------~~~pGQ~v~l~~p~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~~~  110 (290)
T 2r6h_A           38 -------NFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCKNEEETVRAYSMANYPAEGNIITLNVRIATP  110 (290)
T ss_dssp             -------CCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEEECSCEEEEEECCSCTTCCSEEEEEEECCCC
T ss_pred             -------ccCCCceEEEEcccccccccccccchhhcccccccccccccccCCCCcceeeeccCCCCCCCEEEEEEEEecc
Confidence                   67999999999863                             234678999999999888999999997310


Q ss_pred             ---cCCC---CCCCCChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHH
Q psy5567         218 ---NVHP---KFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPML  291 (314)
Q Consensus       218 ---~~~~---~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l  291 (314)
                         +.++   +..++|.+|+||+++++||.|.++||+|.        |.+..          ..++++|||||||||||+
T Consensus       111 ~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd~v~v~gP~G~--------f~~~~----------~~~~~vliagGtGitP~~  172 (290)
T 2r6h_A          111 PFDRAANKWKAGIKPGISSSYIFSLKPGDKVMMSGPYGD--------FHIQD----------TDAEMLYIGGGAGMAPLR  172 (290)
T ss_dssp             CEETTTTEECTTCCCCHHHHHHTTCCTTCEEEEEEEECC--------CCCCS----------SSCEEEEEEEGGGHHHHH
T ss_pred             ccccccccccccCCCcchhhHHhcCCCCCEEEEEecccC--------CcCCC----------CCCeEEEEECccCHHHHH
Confidence               0000   01257999999999999999999999995        44332          468999999999999999


Q ss_pred             HHHHHHhhCCCCCccEEEEEEeC
Q psy5567         292 QLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       292 ~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      +|+++++.+..+..+++|+|++|
T Consensus       173 s~l~~~~~~~~~~~~v~l~~~~r  195 (290)
T 2r6h_A          173 AQILHLFRTLKTGRKVSYWYGAR  195 (290)
T ss_dssp             HHHHHHHHTSCCCSCEEEEEEES
T ss_pred             HHHHHHHHhcCCCCcEEEEEEcC
Confidence            99998887643457999999987

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.93  E-value=2.8e-25  Score=209.81  Aligned_cols=145  Identities=23%  Similarity=0.399  Sum_probs=125.1

Q ss_pred             ccCCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCC
Q psy5567          87 LVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEP  166 (314)
Q Consensus        87 ~l~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (314)
                      ..++..|++++|++++.++++++.|+|+.++.....                                            
T Consensus         2 ~p~~~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~~--------------------------------------------   37 (321)
T 2pia_A            2 TPQEDGFLRLKIASKEKIARDIWSFELTDPQGAPLP--------------------------------------------   37 (321)
T ss_dssp             CTTTTTCEEEEEEEEEEEETTEEEEEEECTTCCCCC--------------------------------------------
T ss_pred             CCCCCCcEEEEEEEEEEcCCCEEEEEEEcCCCCcCC--------------------------------------------
Confidence            356778999999999999999999999987653211                                            


Q ss_pred             CcccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCCh-hchHhh-cCCCCCeEEE
Q psy5567         167 PFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-MSQFLE-NMKVGEPINV  244 (314)
Q Consensus       167 ~~~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~-~S~~L~-~l~~Gd~v~v  244 (314)
                             .+.||||+.|+++ ++  ..|+||+++.+.+.+.++|.||++         ++|. +|+||+ ++++||.|.+
T Consensus        38 -------~~~pGQ~v~l~~~-~g--~~R~ySi~s~~~~~~~l~i~Vk~~---------~~G~g~S~~L~~~l~~Gd~v~v   98 (321)
T 2pia_A           38 -------PFEAGANLTVAVP-NG--SRRTYSLCNDSQERNRYVIAVKRD---------SNGRGGSISFIDDTSEGDAVEV   98 (321)
T ss_dssp             -------CCCTTCEEEEECT-TS--CEEEEECCSCTTCCSEEEEEEECC---------TTSCSHHHHHHHSCCTTCEEEE
T ss_pred             -------CCCCCCEEEEECC-CC--CcEEEEeCCCCCCCCeEEEEEEEe---------cCCcchhHHHHhcCCCCCEEEE
Confidence                   6799999999986 23  889999999998888999999987         6787 999997 9999999999


Q ss_pred             EccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         245 SGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       245 ~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      +||+|.        |.++.          ..++++|||||||||||++|++++..++  ..+++|+|++|
T Consensus        99 ~gP~g~--------f~l~~----------~~~~~vliagG~GItP~~s~l~~l~~~~--~~~v~l~~~~r  148 (321)
T 2pia_A           99 SLPRNE--------FPLDK----------RAKSFILVAGGIGITPMLSMARQLRAEG--LRSFRLYYLTR  148 (321)
T ss_dssp             CCCBCC--------SCCCT----------TCSEEEEEEEGGGHHHHHHHHHHHHHHC--SSEEEEEEEES
T ss_pred             eCCccc--------cccCC----------CCCCEEEEEecccHhHHHHHHHHHHHcC--CCcEEEEEEEC
Confidence            999994        55544          3679999999999999999999998865  26899999987

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}

Probab=99.93  E-value=5.9e-25  Score=197.54  Aligned_cols=147  Identities=20%  Similarity=0.300  Sum_probs=121.4

Q ss_pred             ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccc
Q psy5567          92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFA  171 (314)
Q Consensus        92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (314)
                      .|.+++|++++.++++++.|+|+.++.....                                                 
T Consensus         2 ~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~-------------------------------------------------   32 (243)
T 4eh1_A            2 DGRTFVVREKQVESAYVTSFVLVPADGGAVL-------------------------------------------------   32 (243)
T ss_dssp             CCEEEEEEEEEECSSSEEEEEEEESSCSCCC-------------------------------------------------
T ss_pred             CcEEEEEEEEEEcCCCeEEEEEEeCCCCcCC-------------------------------------------------
Confidence            5889999999999999999999987653222                                                 


Q ss_pred             cCCCCCCcEEEEEeeeCCce--eeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccc
Q psy5567         172 WLGLPIGQHLSLSATINDEF--VARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPR  248 (314)
Q Consensus       172 ~~~~~~GQ~v~l~~~~~~~~--~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~  248 (314)
                        .+.||||+.|.++.++..  ..|+||+++.+.+ +.++|+||.+.    ...+++|.+|+||+ ++++||.|.++||+
T Consensus        33 --~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~~-~~~~i~vk~~~----~~~~~~G~~S~~l~~~l~~G~~v~v~gP~  105 (243)
T 4eh1_A           33 --DYQPGQYIGIEVTPEGSDYREIRQYSLSHASNG-REYRISVKREG----VGSDNPGLVSHYLHNNVKVGDSVKLYAPA  105 (243)
T ss_dssp             --CCCTTCEEEEEECCSSCSSCEEEEEEBCSCCCS-SCEEEEEECTT----TTSSSCCHHHHHHHHHCCTTCEEEEEEEE
T ss_pred             --CcCCCCEEEEEEecCCCccccceeeEeccCCCC-CeEEEEEEEee----cCCCCCCeehhHHHhcCCCCCEEEEEccC
Confidence              689999999999866543  4799999998765 78999999741    11225699999996 79999999999999


Q ss_pred             cCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       249 G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      |.        |.++.          ..++++|||||||||||++|++++..++. .. ++|+|++|
T Consensus       106 G~--------~~~~~----------~~~~~vliagGtGitp~~~~l~~l~~~~~-~~-v~l~~~~r  151 (243)
T 4eh1_A          106 GD--------FFYVE----------RERPVVLISAGVGATPMQAILHTLAKQNK-SG-VTYLYACN  151 (243)
T ss_dssp             CS--------CCCCC----------CSSCEEEEEEGGGHHHHHHHHHHHHHTTC-CS-EEEEEEES
T ss_pred             cc--------cCcCC----------CCCCEEEEEccccHHHHHHHHHHHHHcCC-Ce-EEEEEEeC
Confidence            95        44432          46899999999999999999999998764 23 99999986

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*

Probab=99.93  E-value=5e-25  Score=198.91  Aligned_cols=141  Identities=25%  Similarity=0.307  Sum_probs=118.7

Q ss_pred             ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccc
Q psy5567          92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFA  171 (314)
Q Consensus        92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (314)
                      .|.+++|++++.++++++.|+|+ ++.   .                                                 
T Consensus         3 ~~~~~~V~~~~~~~~~~~~l~l~-~~~---~-------------------------------------------------   29 (248)
T 1fdr_A            3 DWVTGKVTKVQNWTDALFSLTVH-APV---L-------------------------------------------------   29 (248)
T ss_dssp             CEEEEEEEEEEECSSSEEEEEEE-CCC---C-------------------------------------------------
T ss_pred             ceEEEEEEEEEEcCCCEEEEEEe-CCC---C-------------------------------------------------
Confidence            48899999999999999999996 321   2                                                 


Q ss_pred             cCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEE-ccccC
Q psy5567         172 WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVS-GPRGR  250 (314)
Q Consensus       172 ~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~-GP~G~  250 (314)
                        .+.||||+.|.++.++....|+||+++.+.+ +.++|+||.+         ++|.+|+||+++++||.|.++ ||+|.
T Consensus        30 --~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~-~~l~~~v~~~---------~~G~~s~~l~~l~~Gd~v~v~~gP~G~   97 (248)
T 1fdr_A           30 --PFTAGQFTKLGLEIDGERVQRAYSYVNSPDN-PDLEFYLVTV---------PDGKLSPRLAALKPGDEVQVVSEAAGF   97 (248)
T ss_dssp             --CCCTTCEEEEEECC---CEEEEEECCSCTTC-SSEEEEEECC---------TTCSSHHHHHTCCTTCEEEEESSCBCC
T ss_pred             --CcCCCCcEEEEccCCCCeeeeeecccCCCCC-CcEEEEEEEe---------CCCchhhHHHhCCCcCEEEEecCCcce
Confidence              6799999999997666678899999998876 8899999987         789999999999999999999 99994


Q ss_pred             ccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         251 LAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       251 ~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                              |.++..        ...++++|||||||||||++|++++...+. ..+++|+|++|
T Consensus        98 --------f~l~~~--------~~~~~~vliagG~GitP~~~~l~~l~~~~~-~~~v~l~~~~r  144 (248)
T 1fdr_A           98 --------FVLDEV--------PHCETLWMLATGTAIGPYLSILRLGKDLDR-FKNLVLVHAAR  144 (248)
T ss_dssp             --------CSGGGS--------CCCSEEEEEEEGGGGHHHHHHHHHCCSCTT-CSEEEEEEEES
T ss_pred             --------eEcCCC--------CCCceEEEEEecccHHHHHHHHHHHHhhCC-CCcEEEEEEcC
Confidence                    555430        126899999999999999999999876542 57899999986

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*

Probab=99.92  E-value=1.2e-24  Score=210.39  Aligned_cols=150  Identities=20%  Similarity=0.283  Sum_probs=123.6

Q ss_pred             CCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcc
Q psy5567          90 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFH  169 (314)
Q Consensus        90 p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      ...|++++|++++.++++++.|+|++++.....                                               
T Consensus       151 w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~-----------------------------------------------  183 (403)
T 1cqx_A          151 WKGWRTFVIREKRPESDVITSFILEPADGGPVV-----------------------------------------------  183 (403)
T ss_dssp             CSSCEEEEEEEEEECSSSEEEEEEEETTCCCCC-----------------------------------------------
T ss_pred             CCcceeEEEEEEEEcCCCeEEEEEEeCCCCcCC-----------------------------------------------
Confidence            467899999999999999999999987653222                                               


Q ss_pred             cccCCCCCCcEEEEEeeeCCc--eeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEc
Q psy5567         170 FAWLGLPIGQHLSLSATINDE--FVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSG  246 (314)
Q Consensus       170 ~~~~~~~~GQ~v~l~~~~~~~--~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~G  246 (314)
                          .+.||||+.|.++.++.  ...|+||+++.+. .++++|+||++.   ++++ ++|.+|+||+ ++++||.|.++|
T Consensus       184 ----~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~-~~~~~i~Vk~~~---~~~~-~~G~~S~~L~~~l~~Gd~v~v~g  254 (403)
T 1cqx_A          184 ----NFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN-GRTYRISVKREG---GGPQ-PPGYVSNLLHDHVNVGDQVKLAA  254 (403)
T ss_dssp             ----CCCTTCEEEEEEEETTTTEEEEEEEECCSCCC-SSCEEEEEECCC---BTTB-CCCHHHHHHHHHCCTTCEEEECC
T ss_pred             ----CCCCCCEEEEEEecCCCCcceeecceecCCCC-CCeEEEEEEECC---CCCC-CCCeehHHHhhCCCCCCEEEEec
Confidence                68999999999986553  5689999999886 589999999760   0111 2699999997 699999999999


Q ss_pred             cccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         247 PRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       247 P~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      |.|.        |.++.         ...++++|||||||||||++|++++.. + +.++++|+|++|
T Consensus       255 P~G~--------f~l~~---------~~~~~~vlIagGtGitP~~s~l~~l~~-~-~~~~v~l~~~~r  303 (403)
T 1cqx_A          255 PYGS--------FHIDV---------DAKTPIVLISGGVGLTPMVSMLKVALQ-A-PPRQVVFVHGAR  303 (403)
T ss_dssp             CBCS--------CSCCT---------TCCSCEEEEESSCCHHHHHHHHHHHTC-S-SCCCEEEEEEES
T ss_pred             CccC--------cccCC---------CCCCCEEEEEecccHhhHHHHHHHHHh-C-CCCcEEEEEEeC
Confidence            9994        55532         246889999999999999999999987 2 357899999987

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5

Probab=99.92  E-value=8.5e-25  Score=211.06  Aligned_cols=146  Identities=21%  Similarity=0.316  Sum_probs=124.1

Q ss_pred             CCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcc
Q psy5567          90 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFH  169 (314)
Q Consensus        90 p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      ...|.+++|++++.+|++++.|+|++++.....                                               
T Consensus       149 w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~-----------------------------------------------  181 (396)
T 1gvh_A          149 WEGTRDFRIVAKTPRSALITSFELEPVDGGAVA-----------------------------------------------  181 (396)
T ss_dssp             CSSEEEEEEEEEEECSSSEEEEEEEETTCCCCC-----------------------------------------------
T ss_pred             CCCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCC-----------------------------------------------
Confidence            357899999999999999999999987653222                                               


Q ss_pred             cccCCCCCCcEEEEEeeeCCc--eeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEc
Q psy5567         170 FAWLGLPIGQHLSLSATINDE--FVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSG  246 (314)
Q Consensus       170 ~~~~~~~~GQ~v~l~~~~~~~--~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~G  246 (314)
                          .+.||||+.|.++.++.  ...|+||+++.+. .+.++|+||++         ++|.+|+||++ +++||.|.++|
T Consensus       182 ----~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~-~~~~~i~Vk~~---------~~G~~S~~L~~~l~~Gd~v~v~g  247 (396)
T 1gvh_A          182 ----EYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD-GKGYRIAVKRE---------EGGQVSNWLHNHANVGDVVKLVA  247 (396)
T ss_dssp             ----CCCTTCEEEEEECCTTCSSCEEEEEECCSCCC-SSCEEEEEECC---------TTCHHHHHHHHTCCTTCEEEEEE
T ss_pred             ----CCCCCCeEEEEecCCCCccceeecceeccCCC-CCeEEEEEEEc---------CCCcchHHHHhcCCCCCEEEEEc
Confidence                68999999999974442  4689999999887 57899999986         68999999976 99999999999


Q ss_pred             cccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         247 PRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       247 P~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      |.|.        |.++.         ...++++|||||||||||++|++++..++. .++++|+|++|
T Consensus       248 P~G~--------f~l~~---------~~~~~~vlIagGtGitP~~s~l~~l~~~~~-~~~v~l~~~~r  297 (396)
T 1gvh_A          248 PAGD--------FFMAV---------ADDTPVTLISAGVGQTPMLAMLDTLAKAGH-TAQVNWFHAAE  297 (396)
T ss_dssp             EECS--------CCCCC---------CTTCCEEEEEEGGGGHHHHHHHHHHHHHTC-CSCEEEEEEES
T ss_pred             CCcc--------eECCC---------CCCCCEEEEecchhHhHHHHHHHHHHhcCC-CCcEEEEEEeC
Confidence            9994        55542         246889999999999999999999987643 57899999987

>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*

Probab=99.92  E-value=1.5e-24  Score=203.63  Aligned_cols=162  Identities=19%  Similarity=0.218  Sum_probs=127.2

Q ss_pred             ccccccCCCceEEEEEEEEEEeCCC-----EEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeee
Q psy5567          83 ELKTLVDPDVKVPLKLKEKIEINHD-----TRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSR  157 (314)
Q Consensus        83 ~~~~~l~p~~~~~~~l~~~~~ls~~-----~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (314)
                      -...+..|...++++|++++.++++     ++.|+|+.+..   .                                   
T Consensus        23 ~~~~~~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~~~---~-----------------------------------   64 (310)
T 3vo2_A           23 LVTNKYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEGE---I-----------------------------------   64 (310)
T ss_dssp             CCCCSBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC---C-----------------------------------
T ss_pred             CceeeecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCCCC---C-----------------------------------
Confidence            3466778889999999999999998     99999996532   2                                   


Q ss_pred             eccCCCCCCCcccccCCCCCCcEEEEEeeeC---Cce-eeeeeeeecCCC----CCceEEEEEEEEeecCCCCCCCCChh
Q psy5567         158 VVSAPESEPPFHFAWLGLPIGQHLSLSATIN---DEF-VARAYTPVTSDE----HHGYMDLVVKVYFKNVHPKFPDGGKM  229 (314)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~---~~~-~~R~YTp~s~~~----~~g~l~l~VK~~~~~~~~~~~~~G~~  229 (314)
                                      .+.||||+.|.++..   +.. ..|+||+++.+.    +.+.++|+||++....+....++|.+
T Consensus        65 ----------------~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~G~~  128 (310)
T 3vo2_A           65 ----------------PYREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVC  128 (310)
T ss_dssp             ----------------CCCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTSSSEEEEEEECCEEECTTSCEEECHH
T ss_pred             ----------------cccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCcch
Confidence                            679999999998642   222 479999999986    56899999997521111111236999


Q ss_pred             chHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCC----Cc
Q psy5567         230 SQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTD----NT  305 (314)
Q Consensus       230 S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~----~~  305 (314)
                      |+||+++++||.|.++||+|.+.+       ++.         ...++++|||||||||||++|+++++.+..+    ..
T Consensus       129 S~~L~~l~~Gd~v~v~gP~G~~~~-------~~~---------~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~  192 (310)
T 3vo2_A          129 SNFLCDLKPGADVKITGPVGKEML-------MPK---------DPNATVIMLATGTGIAPFRSFLWKMFLEEHEDYKFSG  192 (310)
T ss_dssp             HHHHHTCCTTCEEEEEEEECSTTC-------CBS---------CTTCEEEEEEEGGGGHHHHHHHHHHHSSCCTTCCCCS
T ss_pred             hhHHhcCCCCCEEEEEeccCCccc-------CCC---------CCCCCEEEEeCCcchhHHHHHHHHHHHhhcccccCCC
Confidence            999999999999999999996332       221         2468999999999999999999999865422    26


Q ss_pred             cEEEEEEeC
Q psy5567         306 KMSLIFANQ  314 (314)
Q Consensus       306 ~v~Li~~~r  314 (314)
                      +++|+|++|
T Consensus       193 ~v~L~~g~r  201 (310)
T 3vo2_A          193 LAWLFLGVP  201 (310)
T ss_dssp             EEEEEEEES
T ss_pred             cEEEEEEec
Confidence            899999987

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2

Probab=99.92  E-value=4.2e-25  Score=200.22  Aligned_cols=146  Identities=21%  Similarity=0.431  Sum_probs=122.2

Q ss_pred             CCCceEEEEEEEEEEeCCCEEEEEEEc-C-Ccc-ccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCC
Q psy5567          89 DPDVKVPLKLKEKIEINHDTRCFRFEL-P-SAE-HVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESE  165 (314)
Q Consensus        89 ~p~~~~~~~l~~~~~ls~~~~~~~f~~-p-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (314)
                      ....+.+++|++++.++++++.|+|+. + +.. ...                                           
T Consensus         6 ~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~-------------------------------------------   42 (250)
T 1tvc_A            6 GEVGSFEAEVVGLNWVSSNTVQFLLQKRPDECGNRGV-------------------------------------------   42 (250)
T ss_dssp             CCSSEEEEEBCCCEEEETTEEEEEECSSTTSSSSSCC-------------------------------------------
T ss_pred             CCcceEEEEEEEEEEcCCCeEEEEEEecCCCCccccc-------------------------------------------
Confidence            344578999999999999999999997 6 431 011                                           


Q ss_pred             CCcccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEE
Q psy5567         166 PPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINV  244 (314)
Q Consensus       166 ~~~~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v  244 (314)
                              .+.||||+.|.++  +....|+||+++.+.+.+.++|+||++         ++|.+|+||+ ++++||.|.+
T Consensus        43 --------~~~pGQ~v~l~~~--~~~~~R~ySi~s~~~~~~~l~i~vk~~---------~~G~~s~~l~~~l~~Gd~v~v  103 (250)
T 1tvc_A           43 --------KFEPGQFMDLTIP--GTDVSRSYSPANLPNPEGRLEFLIRVL---------PEGRFSDYLRNDARVGQVLSV  103 (250)
T ss_dssp             --------SCCSCCEEEECTT--SCSSSEEECCBCCSSSSCCEEEEECCC---------TTSSSHHHHHHHSSSSSEEEE
T ss_pred             --------CcCCCcEEEEEeC--CCccccccccCCCCCCCCeEEEEEEEC---------CCCCchHHHHhcCCCCCEEEE
Confidence                    6799999999984  445789999999988778999999987         7899999994 9999999999


Q ss_pred             EccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         245 SGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       245 ~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      +||+|.        |.+..         ...++++|||||||||||++|++++..++. ..+++|+|++|
T Consensus       104 ~gP~G~--------~~~~~---------~~~~~~vliagGtGiaP~~~~l~~l~~~~~-~~~v~l~~~~r  155 (250)
T 1tvc_A          104 KGPLGV--------FGLKE---------RGMAPRYFVAGGTGLAPVVSMVRQMQEWTA-PNETRIYFGVN  155 (250)
T ss_dssp             EEEECC--------CSCCC---------CSSSCEEEEEESSTTHHHHHHHHHHHHHTC-CSCEEEEEECS
T ss_pred             EcCccc--------cccCc---------cCCceEEEEEeccCHHHHHHHHHHHHhcCC-CceEEEEEEeC
Confidence            999995        44433         135789999999999999999999987642 57899999986

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*

Probab=99.92  E-value=8.4e-25  Score=200.31  Aligned_cols=142  Identities=16%  Similarity=0.259  Sum_probs=121.4

Q ss_pred             eEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccccc
Q psy5567          93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAW  172 (314)
Q Consensus        93 ~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (314)
                      ..+++|++++.++++++.|+|+.++.  ..                                                  
T Consensus         5 ~~~~~V~~~~~~t~~~~~l~l~~~~~--~~--------------------------------------------------   32 (262)
T 1ep3_B            5 QEMMTVVSQREVAYNIFEMVLKGTLV--DE--------------------------------------------------   32 (262)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEESGGG--GG--------------------------------------------------
T ss_pred             ccceEEEEEEEecCCEEEEEEEcCcc--cc--------------------------------------------------
Confidence            34799999999999999999997642  12                                                  


Q ss_pred             CCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCcc
Q psy5567         173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLA  252 (314)
Q Consensus       173 ~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~  252 (314)
                       .+.||||+.|.++.++....|+||+++.+.+.++++|+||.+         ++|.+|+||+++++||.|.++||.|+  
T Consensus        33 -~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~---------~~G~~S~~l~~l~~Gd~v~v~gP~G~--  100 (262)
T 1ep3_B           33 -MDLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIG---------DETTGTYKLSKLESGAKVDVMGPLGN--  100 (262)
T ss_dssp             -CCSTTCEEEECCSCTTCCSCEEEECCEEETTTTEEEEEEECC---------CTTSHHHHHHTCCTTCEEEEEEEESB--
T ss_pred             -cCCCCceEEEEcCCCCceeeEEEEeeeecCCCCEEEEEEEEe---------cCCchHHHHhcCCCCCEEEEEcccCC--
Confidence             679999999998755457889999999987779999999986         67999999999999999999999995  


Q ss_pred             ccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         253 YLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       253 y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                           .|.+++        ....++++|||||||||||++|++++..++   .+++|+|++|
T Consensus       101 -----~f~l~~--------~~~~~~~lliagGtGitP~~s~l~~l~~~~---~~v~l~~~~r  146 (262)
T 1ep3_B          101 -----GFPVAE--------VTSTDKILIIGGGIGVPPLYELAKQLEKTG---CQMTILLGFA  146 (262)
T ss_dssp             -----CCCCTT--------CCTTSEEEEEEEGGGSHHHHHHHHHHHHHT---CEEEEEEEES
T ss_pred             -----CccCCC--------ccCCCeEEEEECcCcHHHHHHHHHHHHHcC---CeEEEEEEcC
Confidence                 266554        013689999999999999999999998763   5899999987

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*

Probab=99.92  E-value=9.8e-25  Score=198.53  Aligned_cols=142  Identities=18%  Similarity=0.287  Sum_probs=121.4

Q ss_pred             ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccc
Q psy5567          92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFA  171 (314)
Q Consensus        92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (314)
                      .|.+++|++++.++++++.|+|+.++.   .                                                 
T Consensus         2 ~~~~~~V~~~~~~~~~~~~l~l~~~~~---~-------------------------------------------------   29 (257)
T 2qdx_A            2 NLYTERVLSVHHWNDTLFSFKTTRNPG---L-------------------------------------------------   29 (257)
T ss_dssp             CSEEEEEEEEEEEETTEEEEEEECCTT---C-------------------------------------------------
T ss_pred             ceEEEEEEEEEEcCCCeEEEEEeCCCC---C-------------------------------------------------
Confidence            578999999999999999999987642   1                                                 


Q ss_pred             cCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEE-ccccC
Q psy5567         172 WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVS-GPRGR  250 (314)
Q Consensus       172 ~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~-GP~G~  250 (314)
                        .+.||||+.|.++.++....|+||+++.+.+ +.++|+||.+         ++|.+|+||+++++||.|.++ ||+|.
T Consensus        30 --~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~~i~~~---------~~G~~s~~l~~l~~Gd~v~v~~gp~G~   97 (257)
T 2qdx_A           30 --RFKTGQFVMIGLEVDGRPLMRAYSIASPNYE-EHLEFFSIKV---------PDGPLTSRLQHLKEGDELMVSRKPTGT   97 (257)
T ss_dssp             --CCCTTCEEEEEEEETTEEEEEEEECCSCTTS-SEEEEEEECC---------TTCTTHHHHTTCCTTCEEEECSCCBCS
T ss_pred             --ccCCCCEEEEEecCCCCceeeeeEeecCCCC-CeEEEEEEEe---------CCCcchhHHHhCCCCCEEEEecCCCCC
Confidence              6789999999998777778999999998875 8999999987         789999999999999999999 99994


Q ss_pred             ccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         251 LAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       251 ~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                              |.++..        ...++++|||||||||||++|++++...+. ..+++|+|++|
T Consensus        98 --------f~~~~~--------~~~~~~vliagG~GitP~~~~l~~l~~~~~-~~~v~l~~~~r  144 (257)
T 2qdx_A           98 --------LVHDDL--------LPGKHLYLLSTGTGMAPFLSVIQDPETYER-YEKVILVHGVR  144 (257)
T ss_dssp             --------CCGGGB--------CSCSEEEEEEEGGGGHHHHHHTTCHHHHHH-CSEEEEEEEES
T ss_pred             --------ccCCcc--------cCCCeEEEEEeceEHHHHHHHHHHHHhcCC-CCeEEEEEEcC
Confidence                    555430        125899999999999999999998875432 46899999986

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*

Probab=99.92  E-value=8.8e-25  Score=200.30  Aligned_cols=143  Identities=18%  Similarity=0.279  Sum_probs=122.0

Q ss_pred             CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567          91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF  170 (314)
Q Consensus        91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      ..|++++|++++.++++++.|+|+.++.   .                                                
T Consensus        17 ~~~~~~~V~~~~~~~~~~~~~~l~~~~~---~------------------------------------------------   45 (271)
T 4fk8_A           17 SKFDTATVLSVHHWTDTLFSFTCTRDQA---L------------------------------------------------   45 (271)
T ss_dssp             -CEEEEEEEEEEEEETTEEEEEECCCTT---C------------------------------------------------
T ss_pred             ccceeEEEEEEEEcCCCEEEEEEEcCCC---C------------------------------------------------
Confidence            4689999999999999999999987642   2                                                


Q ss_pred             ccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEE-cccc
Q psy5567         171 AWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVS-GPRG  249 (314)
Q Consensus       171 ~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~-GP~G  249 (314)
                         .++||||+.|.++.++....|+||+++.+.+ +.++|+||++         ++|.+|+||+++++||.|.++ ||+|
T Consensus        46 ---~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~~v~~~---------~~G~~s~~l~~l~~Gd~v~v~~gP~G  112 (271)
T 4fk8_A           46 ---RFNNGEFTMVGLEVDGKPLTRAYSIVSPNYE-EHLEFFSIKV---------QNGPLTSRLQHLKVGDPVLIGKKPTG  112 (271)
T ss_dssp             ---CCCTTCEEEEEEEETTEEEEEEEECCSCTTS-SSEEEEEECC---------TTCTTHHHHTTCCTTCEEEEESCCBC
T ss_pred             ---CcCCCCEEEEEccCCCceeeeeEeccCCCCC-CcEEEEEEEE---------CCCchhhHHhcCCCCCEEEEecCCCc
Confidence               6789999999998878788999999998754 6899999986         789999999999999999999 9999


Q ss_pred             CccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         250 RLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       250 ~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      .        |.++.        ....++++|||||||||||+++++++...+. ..+++|+|++|
T Consensus       113 ~--------~~~~~--------~~~~~~~vliagG~GitP~~~~l~~l~~~~~-~~~v~l~~~~r  160 (271)
T 4fk8_A          113 T--------LVADN--------LLPGKTLWMLSTGTGLAPFMSIIRDPDIYER-FDKVVLTHTCR  160 (271)
T ss_dssp             S--------CCGGG--------BCCCSEEEEEECGGGGHHHHHHTTCHHHHHH-CSEEEEEECCC
T ss_pred             c--------eecCC--------cCCCCeEEEEECCEEHHHHHHHHHHHHhcCC-CCCEEEEEecC
Confidence            5        44432        0146899999999999999999999876432 46899999986

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.91  E-value=5.2e-24  Score=201.48  Aligned_cols=142  Identities=23%  Similarity=0.404  Sum_probs=121.3

Q ss_pred             CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567          91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF  170 (314)
Q Consensus        91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      ..+++++|++++.++++++.|+|+.++.....                                                
T Consensus       106 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~------------------------------------------------  137 (338)
T 1krh_A          106 IHHFEGTLARVENLSDSTITFDIQLDDGQPDI------------------------------------------------  137 (338)
T ss_dssp             CEEEEEEEEEEEESSSSEEEEEEEECTTCCCC------------------------------------------------
T ss_pred             ceEEEEEEEEEEEcCCCEEEEEEEeCCCCCCC------------------------------------------------
Confidence            45789999999999999999999987642111                                                


Q ss_pred             ccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHh-hcCCCCCeEEEEcccc
Q psy5567         171 AWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRG  249 (314)
Q Consensus       171 ~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L-~~l~~Gd~v~v~GP~G  249 (314)
                         .+.||||+.|.++  +....|+||+++.+. .+.++|+||++         ++|.+|+|| .++++||.|.++||+|
T Consensus       138 ---~~~pGQ~v~l~~~--~~~~~R~ySi~s~~~-~~~l~~~vk~~---------~~G~~S~~L~~~l~~Gd~v~v~gP~G  202 (338)
T 1krh_A          138 ---HFLAGQYVNVTLP--GTTETRSYSFSSQPG-NRLTGFVVRNV---------PQGKMSEYLSVQAKAGDKMSFTGPFG  202 (338)
T ss_dssp             ---CCCTTCEEEEECT--TSSCEEEEECCSCTT-CSEEEEEEECC---------TTCHHHHHHHTTCCTTCEEEEEEEEC
T ss_pred             ---CcCCCCeEEEEcC--CCCccccccccCCCC-CCeEEEEEEEc---------CCCCchhhHhhccCCCCEEEEECCcc
Confidence               6799999999985  445789999999987 78999999987         789999999 5899999999999999


Q ss_pred             CccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         250 RLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       250 ~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      .        |.++.          ..++++|||||||||||++|++++..++. ..+++|+|++|
T Consensus       203 ~--------f~~~~----------~~~~~vliagGtGiaP~~s~l~~l~~~~~-~~~v~l~~~~r  248 (338)
T 1krh_A          203 S--------FYLRD----------VKRPVLMLAGGTGIAPFLSMLQVLEQKGS-EHPVRLVFGVT  248 (338)
T ss_dssp             S--------CSCCC----------CSSCEEEEEEGGGHHHHHHHHHHHHHHCC-SSCEEEEEEES
T ss_pred             c--------eEeCC----------CCceEEEEEccccHhHHHHHHHHHHHcCC-CCeEEEEEEeC
Confidence            5        44443          23789999999999999999999987653 57899999987

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*

Probab=99.91  E-value=6e-24  Score=198.90  Aligned_cols=165  Identities=18%  Similarity=0.179  Sum_probs=128.3

Q ss_pred             ccccccccCCCceEEEEEEEEEEeC-----CCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceee
Q psy5567          81 KKELKTLVDPDVKVPLKLKEKIEIN-----HDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWC  155 (314)
Q Consensus        81 ~~~~~~~l~p~~~~~~~l~~~~~ls-----~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (314)
                      +.....+.+|....+++|++++.++     ++++.|+|+.+..   .                                 
T Consensus        16 ~~~~~~~~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~~---~---------------------------------   59 (311)
T 3lo8_A           16 KEPPLNTYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGGN---V---------------------------------   59 (311)
T ss_dssp             SSCCCCSBBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTTS---S---------------------------------
T ss_pred             ccCCccccCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCCC---C---------------------------------
Confidence            3445667788899999999999999     9999999998742   2                                 


Q ss_pred             eeeccCCCCCCCcccccCCCCCCcEEEEEeeeC-----Cc-eeeeeeeeecCCCC----CceEEEEEEEEeecCC----C
Q psy5567         156 SRVVSAPESEPPFHFAWLGLPIGQHLSLSATIN-----DE-FVARAYTPVTSDEH----HGYMDLVVKVYFKNVH----P  221 (314)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~-----~~-~~~R~YTp~s~~~~----~g~l~l~VK~~~~~~~----~  221 (314)
                                        .+.||||+.|.++..     |. ...|+||+++.+.+    .+.++|+||++.....    .
T Consensus        60 ------------------~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~  121 (311)
T 3lo8_A           60 ------------------PYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKE  121 (311)
T ss_dssp             ------------------CCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCCCTTTCCC
T ss_pred             ------------------cccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEEEEEEEEEecccccCcC
Confidence                              689999999998753     21 36899999998864    4899999996410000    0


Q ss_pred             CCCCCChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCC
Q psy5567         222 KFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP  301 (314)
Q Consensus       222 ~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~  301 (314)
                      ...++|.+|+||+++++||.|.++||+|.+.+.++               ....++++|||||||||||++|+++++.++
T Consensus       122 ~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~---------------~~~~~~~vlIagGtGIaP~~s~l~~~~~~~  186 (311)
T 3lo8_A          122 DPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPE---------------EDPNATHIMIATGTGVAPFRGYLRRMFMED  186 (311)
T ss_dssp             CGGGSCHHHHHHHTCCTTCEEEEEEEECCTTCCCC---------------SCTTCEEEEEEEGGGGHHHHHHHHHHHTEE
T ss_pred             CcCCCCchhhHHhcCCCcCEEEEEeccCCcccCCC---------------cCCCCCEEEEECCEEHHHHHHHHHHHHHhc
Confidence            01146999999999999999999999996433210               124689999999999999999999998754


Q ss_pred             CC----CccEEEEEEeC
Q psy5567         302 TD----NTKMSLIFANQ  314 (314)
Q Consensus       302 ~~----~~~v~Li~~~r  314 (314)
                      .+    ..+++|+|++|
T Consensus       187 ~~~~~~~~~v~l~~g~r  203 (311)
T 3lo8_A          187 VPNYRFGGLAWLFLGVA  203 (311)
T ss_dssp             CTTCCCCSEEEEEEEES
T ss_pred             cccccCCCCEEEEEecC
Confidence            32    25899999986

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1

Probab=99.91  E-value=2.4e-24  Score=192.63  Aligned_cols=138  Identities=16%  Similarity=0.256  Sum_probs=112.5

Q ss_pred             eEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccccc
Q psy5567          93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAW  172 (314)
Q Consensus        93 ~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (314)
                      .++++|++++.++++++.|+|+.+..   .                                                  
T Consensus         2 ~~~~~V~~~~~~~~~~~~l~l~~~~~---~--------------------------------------------------   28 (232)
T 1qfj_A            2 TLSCKVTSVEAITDTVYRVRIVPDAA---F--------------------------------------------------   28 (232)
T ss_dssp             EEEEEEEEEEESSSSCEEEEEEESSC---C--------------------------------------------------
T ss_pred             ceEEEEEEEEecCCCEEEEEEecCCC---C--------------------------------------------------
Confidence            36799999999999999999997632   1                                                  


Q ss_pred             CCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchH-hhcCCCCCeEEEEccccCc
Q psy5567         173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQF-LENMKVGEPINVSGPRGRL  251 (314)
Q Consensus       173 ~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~-L~~l~~Gd~v~v~GP~G~~  251 (314)
                       .+.||||+.|.++.   ...|+||+++.+.+.+.++|.||++         ++|.+|++ ++++++||.|.++||+|. 
T Consensus        29 -~~~pGq~v~l~~~~---~~~R~ySi~s~~~~~~~l~l~i~~~---------~~G~~s~~~~~~l~~Gd~v~v~gP~G~-   94 (232)
T 1qfj_A           29 -SFRAGQYLMVVMDE---RDKRPFSMASTPDEKGFIELHIGAS---------EINLYAKAVMDRILKDHQIVVDIPHGE-   94 (232)
T ss_dssp             -CCCTTCEEEEESSS---SCEEEEECCSCTTSTTCEEEEEC---------------CCHHHHHHHHHHSEEEEEEEECS-
T ss_pred             -CcCCCCEEEEECCC---CceeeeecCCCCCCCCcEEEEEEEc---------cCCchhHHHHHhCCCCCEEEEeCCccc-
Confidence             67999999999852   4689999999998878999999987         66777776 589999999999999995 


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         252 AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       252 ~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                             |.+.+         ...++++|||||||||||++|++++..++. ..+++|+|++|
T Consensus        95 -------~~~~~---------~~~~~~vliagG~GitP~~~~l~~l~~~~~-~~~v~l~~~~r  140 (232)
T 1qfj_A           95 -------AWLRD---------DEERPMILIAGGTGFSYARSILLTALARNP-NRDITIYWGGR  140 (232)
T ss_dssp             -------CCCCS---------CSSSCEEEEEETTCHHHHHHHHHHHHHHCT-TCCEEEEEEES
T ss_pred             -------eEeCC---------CCCCcEEEEEecccHhHHHHHHHHHHhcCC-CCcEEEEEeeC
Confidence                   44433         136889999999999999999999987642 57899999987

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*

Probab=99.91  E-value=4.3e-24  Score=196.57  Aligned_cols=142  Identities=22%  Similarity=0.304  Sum_probs=119.8

Q ss_pred             ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccc
Q psy5567          92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFA  171 (314)
Q Consensus        92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (314)
                      .+.+++|++++.++++++.|+|+.++.   .                                                 
T Consensus        15 ~~~~~~V~~~~~~~~~~~~l~l~~~~~---~-------------------------------------------------   42 (272)
T 2bgi_A           15 LPDAQTVTSVRHWTDTLFSFRVTRPQT---L-------------------------------------------------   42 (272)
T ss_dssp             -CEEEEEEEEEEEETTEEEEEEECCTT---C-------------------------------------------------
T ss_pred             EeEEEEEEEEEEcCCCEEEEEEeCCCC---C-------------------------------------------------
Confidence            346799999999999999999997642   1                                                 


Q ss_pred             cCCCCCCcEEEEEeee-CCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEE-cccc
Q psy5567         172 WLGLPIGQHLSLSATI-NDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVS-GPRG  249 (314)
Q Consensus       172 ~~~~~~GQ~v~l~~~~-~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~-GP~G  249 (314)
                        .+.||||+.|.++. ++....|+||+++.+.+ +.++|+||.+         ++|.+|+||+++++||.|.++ ||+|
T Consensus        43 --~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~-~~~~l~v~~~---------~~G~~s~~l~~l~~Gd~v~v~~gP~G  110 (272)
T 2bgi_A           43 --RFRSGEFVMIGLLDDNGKPIMRAYSIASPAWD-EELEFYSIKV---------PDGPLTSRLQHIKVGEQIILRPKPVG  110 (272)
T ss_dssp             --CCCTTCEEEEEEECTTSCEEEEEEECCSCTTC-SEEEEEEECC---------TTCTTHHHHTTCCTTCEEEEEEEEEC
T ss_pred             --ccCCCCEEEEEeccCCCCeeeeeeeeccCCCC-CeEEEEEEEc---------cCCCchhHHHhCCCCCEEEEeeCCCC
Confidence              67899999999974 45678899999998875 8999999987         789999999999999999999 9999


Q ss_pred             CccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         250 RLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       250 ~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      .        |.++..        ...++++|||||||||||++|++++...+. ..+++|+|++|
T Consensus       111 ~--------f~~~~~--------~~~~~~vliagG~GiaP~~~~l~~l~~~~~-~~~v~l~~~~r  158 (272)
T 2bgi_A          111 T--------LVIDAL--------LPGKRLWFLATGTGIAPFASLMREPEAYEK-FDEVIMMHACR  158 (272)
T ss_dssp             S--------CCGGGB--------CCCSEEEEEEEGGGGHHHHHHTTCGGGGTS-CSEEEEEEEES
T ss_pred             c--------cccccc--------ccCCeEEEEeecccHHHHHHHHHHHHhcCC-CCcEEEEEEeC
Confidence            4        555430        125899999999999999999999876532 57899999987

>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*

Probab=99.91  E-value=1.3e-23  Score=203.45  Aligned_cols=160  Identities=21%  Similarity=0.318  Sum_probs=124.5

Q ss_pred             CCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcc
Q psy5567          90 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFH  169 (314)
Q Consensus        90 p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (314)
                      -..|++++|++++.++++++.|+|+.++.....                      +.                    .| 
T Consensus       146 w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~----------------------l~--------------------~~-  182 (399)
T 4g1v_A          146 WPGWKPFEITAKEYVASDIVEFTVKPKFGSGIE----------------------LE--------------------SL-  182 (399)
T ss_dssp             SCSCEEEEEEEEEEEETTEEEEEEEECTTSCCC----------------------GG--------------------GC-
T ss_pred             CCcceEEEEEEEEEcCCCeEEEEEEcCCCCcCC----------------------cC--------------------CC-
Confidence            467999999999999999999999988653210                      00                    01 


Q ss_pred             cccCCCCCCcEEEEEeeeC--Cc--eeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEE
Q psy5567         170 FAWLGLPIGQHLSLSATIN--DE--FVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINV  244 (314)
Q Consensus       170 ~~~~~~~~GQ~v~l~~~~~--~~--~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v  244 (314)
                          .+.||||+.|.++.+  +.  ...|+||+++.+.+ +.++|+||++...  .+. ++|.+|+||+ ++++||.|.+
T Consensus       183 ----~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~~-~~~~i~Vk~~~~~--~~~-~~G~~S~~L~~~l~~Gd~v~v  254 (399)
T 4g1v_A          183 ----PITPGQYITVNTHPIRQENQYDALRHYSLCSASTK-NGLRFAVKMEAAR--ENF-PAGLVSEYLHKDAKVGDEIKL  254 (399)
T ss_dssp             ----CCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCCT-TCEEEEEECCCCB--TTB-CCCHHHHHHHHTCCTTCEEEE
T ss_pred             ----CCCCCCEEEEEEeCCCCCCccceeeeecccCCCCC-CeEEEEEEeccCC--CCC-CCCEehhHHHhCCCCCCEEEE
Confidence                678999999998655  43  57899999998865 7899999974110  001 4799999995 9999999999


Q ss_pred             EccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         245 SGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       245 ~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      +||+|.        |.++..+     .....++++|||||||||||++|++++..++. .++++|+|++|
T Consensus       255 ~gP~G~--------f~l~~~~-----~~~~~~~~vlIagG~GitP~~s~l~~l~~~~~-~~~v~l~~~~r  310 (399)
T 4g1v_A          255 SAPAGD--------FAINKEL-----IHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNP-NRPIYWIQSSY  310 (399)
T ss_dssp             EEEECS--------CCCCTTT-----TTCSSSCEEEEEEGGGHHHHHHHHHHHHHHCT-TSCEEEEEEES
T ss_pred             Eecccc--------eeeCccc-----ccCCCCCEEEEecceeHhHHHHHHHHHHHcCC-CCCEEEEEecC
Confidence            999994        5554300     00136899999999999999999999987653 57899999987

>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*

Probab=99.90  E-value=4.3e-23  Score=193.57  Aligned_cols=161  Identities=18%  Similarity=0.196  Sum_probs=124.7

Q ss_pred             cccccCCCceEEEEEEEEEEeCC-----CEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeee
Q psy5567          84 LKTLVDPDVKVPLKLKEKIEINH-----DTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRV  158 (314)
Q Consensus        84 ~~~~l~p~~~~~~~l~~~~~ls~-----~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (314)
                      .....++..+..++|++++.+++     +++.|+|+.+..   .                                    
T Consensus        28 ~~~~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~---~------------------------------------   68 (314)
T 1fnb_A           28 TVNKFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE---I------------------------------------   68 (314)
T ss_dssp             CCCSBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC---C------------------------------------
T ss_pred             CccccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC---C------------------------------------
Confidence            34566778889999999999998     899999997643   2                                    


Q ss_pred             ccCCCCCCCcccccCCCCCCcEEEEEeeeC---Cc-eeeeeeeeecCCC----CCceEEEEEEEEeecCCCCCCCCChhc
Q psy5567         159 VSAPESEPPFHFAWLGLPIGQHLSLSATIN---DE-FVARAYTPVTSDE----HHGYMDLVVKVYFKNVHPKFPDGGKMS  230 (314)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~---~~-~~~R~YTp~s~~~----~~g~l~l~VK~~~~~~~~~~~~~G~~S  230 (314)
                                     .+.||||+.|.++..   +. ...|+||+++.+.    +.+.++|+||+..........++|.+|
T Consensus        69 ---------------~~~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S  133 (314)
T 1fnb_A           69 ---------------PYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCS  133 (314)
T ss_dssp             ---------------CCCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHH
T ss_pred             ---------------CcCCCCEEEEecCCCCcCCCcCCceeEecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCCchh
Confidence                           679999999998642   22 3679999999875    358999999963111000111359999


Q ss_pred             hHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCC----CCcc
Q psy5567         231 QFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT----DNTK  306 (314)
Q Consensus       231 ~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~----~~~~  306 (314)
                      +||+++++||.|.++||.|.+.       .++.         ...++++|||||||||||++|+++++.++.    ...+
T Consensus       134 ~~L~~l~~Gd~v~v~gP~G~~~-------~~~~---------~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~  197 (314)
T 1fnb_A          134 NFLCDLKPGAEVKLTGPVGKEM-------LMPK---------DPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGL  197 (314)
T ss_dssp             HHHHHCCTTCEEEEEEEECSTT-------CCBS---------CTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTTBCCCSE
T ss_pred             hHhhcCCCCCEEEEEeccCCce-------eCCC---------CCCCCEEEEeCCccHHHHHHHHHHHHHhccccccCCCC
Confidence            9999999999999999999632       2222         136789999999999999999999987642    1368


Q ss_pred             EEEEEEeC
Q psy5567         307 MSLIFANQ  314 (314)
Q Consensus       307 v~Li~~~r  314 (314)
                      ++|+|++|
T Consensus       198 v~L~~g~R  205 (314)
T 1fnb_A          198 AWLFLGVP  205 (314)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEecC
Confidence            99999987

>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}

Probab=99.90  E-value=4e-23  Score=189.01  Aligned_cols=143  Identities=13%  Similarity=0.110  Sum_probs=114.8

Q ss_pred             cCCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCC
Q psy5567          88 VDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPP  167 (314)
Q Consensus        88 l~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (314)
                      +.+..+.+++|++++++++++++|+|+.++.....                                             
T Consensus         3 ~~~~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~~---------------------------------------------   37 (252)
T 2gpj_A            3 MNKPAPRELEVIRSTYITPHMLRITLGGAGLAGFP---------------------------------------------   37 (252)
T ss_dssp             ---CCCEEEEEEEEEEEETTEEEEEEESGGGTTCC---------------------------------------------
T ss_pred             CCCCCcEEEEEEEEEEcCCCEEEEEEEcCChhhcC---------------------------------------------
Confidence            34566899999999999999999999977542211                                             


Q ss_pred             cccccCCCCCCcEEEEEeee-CCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCC-ChhchHhhcCCCCCeEEEE
Q psy5567         168 FHFAWLGLPIGQHLSLSATI-NDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDG-GKMSQFLENMKVGEPINVS  245 (314)
Q Consensus       168 ~~~~~~~~~~GQ~v~l~~~~-~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~-G~~S~~L~~l~~Gd~v~v~  245 (314)
                            .+.|||||.|.++. ++....|+||+++.+.  +.++|.|++.         ++ |.+|+||+++++||.|.+.
T Consensus        38 ------~~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~--~~~~i~~~~~---------~~~G~~S~~l~~l~~Gd~l~v~  100 (252)
T 2gpj_A           38 ------ADQESAYIKLLFPQAGERPLMRTYTIRQQRD--DEIDVDFVLH---------DTDGPASSWAKTAQVGELIQIG  100 (252)
T ss_dssp             ------SCCTTCEEEEEECCTTSCCEEEEEECCEEET--TEEEEEEECC---------SSCCHHHHHHHHCCTTCEEEEE
T ss_pred             ------CCCCCCeEEEEcccCCCCCCCCceeeeccCC--CEEEEEEEEe---------CCCCcHHHHHhhCCCCCEEEEe
Confidence                  57999999999975 3456889999998765  6888888865         44 9999999999999999999


Q ss_pred             ccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         246 GPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       246 GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      ||.|.        |.+++          ..++++|||||||||||++|++++...    .+++++++++
T Consensus       101 gP~G~--------f~l~~----------~~~~~lliagGtGitPi~s~l~~l~~~----~~~~~~~~~~  147 (252)
T 2gpj_A          101 GPGLK--------KLINF----------EADWFLLAGDMTALPAISVNLAKLPNN----AVGYAVIEVL  147 (252)
T ss_dssp             EEECC--------CCCCS----------SSSEEEEEEEGGGHHHHHHHHHHSCTT----CEEEEEEEES
T ss_pred             cCCCC--------CcCCC----------CCceEEEEcchhhHHHHHHHHHhCCCC----CcEEEEEEEC
Confidence            99994        55543          247899999999999999999998432    4677777654

>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}

Probab=99.89  E-value=1.1e-22  Score=198.58  Aligned_cols=163  Identities=21%  Similarity=0.321  Sum_probs=127.0

Q ss_pred             cccccccCCCceEEEEEEEEEEeCC-----CEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeee
Q psy5567          82 KELKTLVDPDVKVPLKLKEKIEINH-----DTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCS  156 (314)
Q Consensus        82 ~~~~~~l~p~~~~~~~l~~~~~ls~-----~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (314)
                      ++...++.+..+..++|++++.+++     +++.|+|+++...  .                                  
T Consensus       111 ~~p~~~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~--~----------------------------------  154 (402)
T 2b5o_A          111 SVPVNIYRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEGD--L----------------------------------  154 (402)
T ss_dssp             CCCCCSSCSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTSC--C----------------------------------
T ss_pred             CCCcccccCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCCC--C----------------------------------
Confidence            4455667778889999999999999     9999999987431  2                                  


Q ss_pred             eeccCCCCCCCcccccCCCCCCcEEEEEeeeC---Cc-eeeeeeeeecCCCC----CceEEEEEEE--EeecCCCCCCCC
Q psy5567         157 RVVSAPESEPPFHFAWLGLPIGQHLSLSATIN---DE-FVARAYTPVTSDEH----HGYMDLVVKV--YFKNVHPKFPDG  226 (314)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~---~~-~~~R~YTp~s~~~~----~g~l~l~VK~--~~~~~~~~~~~~  226 (314)
                                       .+.||||+.|.++..   +. ...|+||+++.+.+    .+.++|+||+  |... .....++
T Consensus       155 -----------------~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p~~~~~~~~~l~l~Vk~~~y~~~-~~~~~~~  216 (402)
T 2b5o_A          155 -----------------RYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDP-ESGETVY  216 (402)
T ss_dssp             -----------------CCCTTCEEEEECSSEETTTEECCCEEEEBCSCTTTTTTSSCEEEEEEECCEEECT-TTCCEEE
T ss_pred             -----------------CcCCCCEEEEEecCCCcCCCccCceeeeccCCCccccCCCCEEEEEEEEeeeccc-ccCcCCC
Confidence                             689999999987531   22 36799999998863    6899999997  2100 0001136


Q ss_pred             ChhchHhhcCCCC-CeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCC--
Q psy5567         227 GKMSQFLENMKVG-EPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTD--  303 (314)
Q Consensus       227 G~~S~~L~~l~~G-d~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~--  303 (314)
                      |.+|+||+++++| |.|.+.||+|.+.       .++.         ...++++|||||||||||++|+++++.++.+  
T Consensus       217 G~~S~~L~~l~~G~d~v~v~gP~G~~~-------~l~~---------~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~~~  280 (402)
T 2b5o_A          217 GVCSTYLCNLPVGTDDVKITGPVGKEM-------LLPD---------DEDATVVMLATGTGIAPFRAFLWRMFKEQHEDY  280 (402)
T ss_dssp             CHHHHHHHTCCTTCCCEEEEEEECSTT-------CCCS---------CTTCEEEEEEEGGGGHHHHHHHHHHHTCCCSSC
T ss_pred             CchhHHHhhCCCCCceEEEEcccCCcc-------cCCc---------cCCCCEEEEEcccCHHHHHHHHHHHHHhccccc
Confidence            9999999999999 9999999999632       2322         2368999999999999999999999876531  


Q ss_pred             --CccEEEEEEeC
Q psy5567         304 --NTKMSLIFANQ  314 (314)
Q Consensus       304 --~~~v~Li~~~r  314 (314)
                        ..+++|+|++|
T Consensus       281 ~~~~~v~L~~g~R  293 (402)
T 2b5o_A          281 KFKGKAWLIFGVP  293 (402)
T ss_dssp             CCCSEEEEEEEES
T ss_pred             cccCCEEEEEecC
Confidence              36899999987

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*

Probab=99.89  E-value=1.1e-22  Score=192.17  Aligned_cols=157  Identities=19%  Similarity=0.330  Sum_probs=122.3

Q ss_pred             cccCCCceEEEEEEEEEEeC-----CCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeecc
Q psy5567          86 TLVDPDVKVPLKLKEKIEIN-----HDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVS  160 (314)
Q Consensus        86 ~~l~p~~~~~~~l~~~~~ls-----~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (314)
                      .+..|.....++|++++.++     ++++.++|..+..   .                                      
T Consensus         8 ~~~~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~~~---~--------------------------------------   46 (316)
T 3jqq_A            8 NLYTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHNGL---F--------------------------------------   46 (316)
T ss_dssp             TSSCSSSCEEEEEEEEEECSCTTCSCCEEEEEEECTTC---C--------------------------------------
T ss_pred             eeecCCCCEEEEEEeeEEccCCCCCCceEEEEEeCCCC---c--------------------------------------
Confidence            44556677899999999998     8999999987532   2                                      


Q ss_pred             CCCCCCCcccccCCCCCCcEEEEEeeeC----------------------------------CceeeeeeeeecCCCCCc
Q psy5567         161 APESEPPFHFAWLGLPIGQHLSLSATIN----------------------------------DEFVARAYTPVTSDEHHG  206 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~~~GQ~v~l~~~~~----------------------------------~~~~~R~YTp~s~~~~~g  206 (314)
                                   .|.+|||+.|..+..                                  +....|+||++|++.+ +
T Consensus        47 -------------~~~~GQ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~g~~~~R~ySIaS~p~~-~  112 (316)
T 3jqq_A           47 -------------KYLEGHTCGIIPYYNELDNNPNNQINKDHNIINTTNHTNHNNIALSHIKKQRCARLYSISSSNNM-E  112 (316)
T ss_dssp             -------------CCCTTCEEEECTTCC-----------------------------------CCCCEEEEBCSCTTS-S
T ss_pred             -------------ceecCcEeEEECCCcccccccccccccccccccccccccccccccccCCCcccceeeecccCCCC-C
Confidence                         678999998877532                                  3457899999999876 7


Q ss_pred             eEEEEEEEEe--ec-CCCCCCCCChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCC---CCCeEEE
Q psy5567         207 YMDLVVKVYF--KN-VHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNL---KVTQLSM  280 (314)
Q Consensus       207 ~l~l~VK~~~--~~-~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~---~~~~vvm  280 (314)
                      .++|+||+..  .. ......++|.+|+||++|++||.|.++||+|.        |.++.         .   ..++++|
T Consensus       113 ~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~--------f~l~~---------~~~~~~~~vvl  175 (316)
T 3jqq_A          113 NLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHGY--------FNLPN---------DAIQKNTNFIF  175 (316)
T ss_dssp             SEEEEEECCBC---------CCBCHHHHHHHTCCTTCEEEEEEEECC--------CCCCT---------THHHHTCCEEE
T ss_pred             eEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCCEEEEEecCCc--------eEcCC---------cccCCCCcEEE
Confidence            8999999630  00 00112256999999999999999999999994        55544         1   2678999


Q ss_pred             EEcCcCHHHHHHHHHHHhhCCC---------CCccEEEEEEeC
Q psy5567         281 IAGGTGITPMLQLVRHITKDPT---------DNTKMSLIFANQ  314 (314)
Q Consensus       281 IAgGtGItP~l~li~~l~~~~~---------~~~~v~Li~~~r  314 (314)
                      ||||||||||++|++++...+.         +..+++|+|++|
T Consensus       176 IAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R  218 (316)
T 3jqq_A          176 IATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVY  218 (316)
T ss_dssp             EEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEES
T ss_pred             EeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEec
Confidence            9999999999999999987642         247899999987

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...

Probab=99.89  E-value=2e-22  Score=187.70  Aligned_cols=161  Identities=21%  Similarity=0.301  Sum_probs=123.0

Q ss_pred             ccccCCCceEEEEEEEEEEeCC-----CEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeec
Q psy5567          85 KTLVDPDVKVPLKLKEKIEINH-----DTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVV  159 (314)
Q Consensus        85 ~~~l~p~~~~~~~l~~~~~ls~-----~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (314)
                      ....++.....++|++++.+++     +++.|+|+++...  .                                     
T Consensus        13 ~~~~~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~--~-------------------------------------   53 (304)
T 2bmw_A           13 VNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGN--L-------------------------------------   53 (304)
T ss_dssp             CCSBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSC--C-------------------------------------
T ss_pred             ccccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCc--c-------------------------------------
Confidence            3566677788999999999999     8999999987531  2                                     


Q ss_pred             cCCCCCCCcccccCCCCCCcEEEEEeeeC---Cc-eeeeeeeeecCCC----CCceEEEEEEEE-eecCCCCCCCCChhc
Q psy5567         160 SAPESEPPFHFAWLGLPIGQHLSLSATIN---DE-FVARAYTPVTSDE----HHGYMDLVVKVY-FKNVHPKFPDGGKMS  230 (314)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~---~~-~~~R~YTp~s~~~----~~g~l~l~VK~~-~~~~~~~~~~~G~~S  230 (314)
                                    .+.||||+.|.++..   +. ...|+||+++.+.    +.+.++|+||.. ++.........|.+|
T Consensus        54 --------------~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~~~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S  119 (304)
T 2bmw_A           54 --------------KYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCS  119 (304)
T ss_dssp             --------------CCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHH
T ss_pred             --------------ccCCCCEEEEEcCCCcccCCCCCCcceecCCCCcccCCCCCEEEEEEEEEEeeccccCcCCCcchh
Confidence                          689999999998642   22 3579999999875    368999999972 110000001259999


Q ss_pred             hHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCC--------
Q psy5567         231 QFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT--------  302 (314)
Q Consensus       231 ~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~--------  302 (314)
                      +||+++++||.|.++||+|.+       |.++.         ...++++|||||||||||++++++++.+..        
T Consensus       120 ~~L~~l~~Gd~v~v~gP~G~~-------~~~~~---------~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~  183 (304)
T 2bmw_A          120 TYLTHIEPGSEVKITGPVGKE-------MLLPD---------DPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQ  183 (304)
T ss_dssp             HHHHTCCTTCEEEEEEEECSS-------SCCCS---------CTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCC
T ss_pred             hHHhcCCCCCEEEEEeccCCc-------eeCCC---------CCCCCEEEEecCccHHHHHHHHHHHHHhhhhhcccccc
Confidence            999999999999999999963       22222         235789999999999999999999875420        


Q ss_pred             CCccEEEEEEeC
Q psy5567         303 DNTKMSLIFANQ  314 (314)
Q Consensus       303 ~~~~v~Li~~~r  314 (314)
                      ...+++|+|++|
T Consensus       184 ~~~~v~l~~g~r  195 (304)
T 2bmw_A          184 FKGFSWLVFGVP  195 (304)
T ss_dssp             CCSCEEEEEEES
T ss_pred             cCCCEEEEEEeC
Confidence            136899999987

>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*

Probab=99.89  E-value=1.5e-22  Score=189.68  Aligned_cols=162  Identities=14%  Similarity=0.273  Sum_probs=122.7

Q ss_pred             ccccCCCceEEEEEEEEEEeCCC--------------EEEEEEEcCCccccccceecccccccccccCCCcccccCcccc
Q psy5567          85 KTLVDPDVKVPLKLKEKIEINHD--------------TRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQR  150 (314)
Q Consensus        85 ~~~l~p~~~~~~~l~~~~~ls~~--------------~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (314)
                      .....+...+.++|++++.++++              ++.|+|+.+..  ..                            
T Consensus        13 ~~~~~~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~--~~----------------------------   62 (314)
T 2rc5_A           13 INLFKKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHS--AY----------------------------   62 (314)
T ss_dssp             CCSBBTTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTT--TC----------------------------
T ss_pred             cCCCCCCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCC--cC----------------------------
Confidence            34455667889999999999998              99999987643  12                            


Q ss_pred             cceeeeeeccCCCCCCCcccccCCCCCCcEEEEEeeeC---Cc--------eeeeeeeeecCCC----CCceEEEEEEEE
Q psy5567         151 VSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATIN---DE--------FVARAYTPVTSDE----HHGYMDLVVKVY  215 (314)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~---~~--------~~~R~YTp~s~~~----~~g~l~l~VK~~  215 (314)
                                             .+.||||+.|.++..   +.        ...|+||+++.+.    +.+.++|+||++
T Consensus        63 -----------------------~~~pGQ~v~l~~~~~~~~g~~~~~~~~~~~~R~ySi~s~p~~~~~~~~~l~l~vk~~  119 (314)
T 2rc5_A           63 -----------------------PYVIGQSGGVIPPGEDPEKKAKGLADVGYTVRLYSIASPSYSFGMKEDNIEFIIKRD  119 (314)
T ss_dssp             -----------------------CCCTTCEEEEECSSBCHHHHHTTCSCCBCCCEEEECCSCTTCGGGCCCEEEEEEECC
T ss_pred             -----------------------cccCCCEEEEECCCCccccCccchhhcCCCceeeeccCCccccCCCCCEEEEEEEEE
Confidence                                   679999999998642   22        2679999999885    468999999975


Q ss_pred             ee-cCCCCCCCCChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHH
Q psy5567         216 FK-NVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLV  294 (314)
Q Consensus       216 ~~-~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li  294 (314)
                      .. ..+.+..++|.+|+||+++++||.|.++||.|.+.+.       +.        ....++++|||||||||||++|+
T Consensus       120 ~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~-------~~--------~~~~~~~vlIagGtGIaP~~s~l  184 (314)
T 2rc5_A          120 NIYDENGNIQFKGVCSNYMCDLKPGDEVTMTGPSGKKFLL-------PN--------TDFSGDIMFLATGTGIAPFIGMS  184 (314)
T ss_dssp             BCC--CCSCSSBCHHHHHHHTCCTTCEEEEEEEECSSSCC-------CS--------SCBCSCEEEEEEGGGGHHHHHHH
T ss_pred             eecCCCCCcCCCcchHHHHhcCCCcCEEEEEeccCCceeC-------CC--------CCCCCCEEEEECCccHHHHHHHH
Confidence            10 0000111368999999999999999999999963222       11        01367899999999999999999


Q ss_pred             HHHhhCCC--CCccEEEEEEeC
Q psy5567         295 RHITKDPT--DNTKMSLIFANQ  314 (314)
Q Consensus       295 ~~l~~~~~--~~~~v~Li~~~r  314 (314)
                      +++..++.  ...+++|+|++|
T Consensus       185 ~~l~~~~~~~~~~~v~l~~g~r  206 (314)
T 2rc5_A          185 EELLEHKLIKFTGNITLVYGAP  206 (314)
T ss_dssp             HHHHTTCSSCBCSCEEEEEEES
T ss_pred             HHHHHhcccCCCCcEEEEEEeC
Confidence            99987642  236899999987

>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*

Probab=99.72  E-value=1.7e-18  Score=167.87  Aligned_cols=119  Identities=24%  Similarity=0.305  Sum_probs=95.3

Q ss_pred             CCCCCcEEEEEeeeCCceeeeeeeeecCCCC-CceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEccccCc
Q psy5567         174 GLPIGQHLSLSATINDEFVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRL  251 (314)
Q Consensus       174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~  251 (314)
                      .+++|||+.+..+    ...|+||++|++.. .+.++|+||++....+ ..+.+|.+|+||++ +++||.|.+.||.+. 
T Consensus       145 ~~~~Gq~v~l~~~----~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~-~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~g-  218 (374)
T 1ddg_A          145 QLDAEALINLLRP----LTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEEGEVRVFIEHND-  218 (374)
T ss_dssp             CCCHHHHHHHSCB----CCCEEEEBCCCTTTSCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCSSCEEEEEEECCT-
T ss_pred             CCCHHHHHhhccC----CCCccceecCCCCCCCCEEEEEEEEEEeecC-CCCCCCCchHHHHhcCCCCCEEEEEEeeCC-
Confidence            6799999988764    36899999999875 7899999998622211 22246999999977 999999999995541 


Q ss_pred             cccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         252 AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       252 ~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                            .|.++.         +..++++|||||||||||++|++++...+. ..+++|+||+|
T Consensus       219 ------~F~lp~---------~~~~piimIa~GtGIAP~~s~l~~~~~~~~-~~~~~L~~G~R  265 (374)
T 1ddg_A          219 ------NFRLPA---------NPETPVIMIGPGTGIAPFRAFMQQRAADEA-PGKNWLFFGNP  265 (374)
T ss_dssp             ------TSCCCS---------STTSCEEEECCGGGGHHHHHHHHHHHHHTC-CSCEEEEEEES
T ss_pred             ------CccCCC---------CCCCCEEEEECCccHHHHHHHHHHHHhcCC-CCCEEEEEEeC
Confidence                  577654         236789999999999999999999887653 57899999997

>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*

Probab=99.64  E-value=8.6e-17  Score=157.05  Aligned_cols=120  Identities=21%  Similarity=0.303  Sum_probs=89.5

Q ss_pred             CCCCCcEEEEEeeeCCceeeeeeeeecCCCC-CceEEEEEEEEeecC-CCCCCCCChhchHhhcCCCCCeEE--EEcccc
Q psy5567         174 GLPIGQHLSLSATINDEFVARAYTPVTSDEH-HGYMDLVVKVYFKNV-HPKFPDGGKMSQFLENMKVGEPIN--VSGPRG  249 (314)
Q Consensus       174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~-~~~~~~~G~~S~~L~~l~~Gd~v~--v~GP~G  249 (314)
                      .++++|++.+- +   ....|+||++|++.. .+.++|+|+++.... ..+-...|.+|+||+++++||.|.  ++||.|
T Consensus       156 ~~p~~~~l~~l-p---~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~v~~P~g  231 (393)
T 4dql_A          156 EMKFSEFIALL-P---SIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQS  231 (393)
T ss_dssp             CCCHHHHHHTS-C---BCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTTCEEEEEEECCSS
T ss_pred             CCCHHHHHHhC-C---CCcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCCcCEEEEEEEcCCC
Confidence            55677777552 1   236799999999875 589999999762210 000011299999999999999998  789999


Q ss_pred             CccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHH---hhCCCCCccEEEEEEeC
Q psy5567         250 RLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHI---TKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       250 ~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l---~~~~~~~~~v~Li~~~r  314 (314)
                              .|.++.         ...++++|||||||||||++++++.   ..++.+..+++|+||+|
T Consensus       232 --------~F~lp~---------~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R  282 (393)
T 4dql_A          232 --------EFTLPK---------DPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCR  282 (393)
T ss_dssp             --------CCCCCS---------STTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEES
T ss_pred             --------CcccCc---------cCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEEC
Confidence                    466654         2357899999999999999999984   33444456899999997

>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4

Probab=99.56  E-value=3.3e-15  Score=147.45  Aligned_cols=107  Identities=18%  Similarity=0.241  Sum_probs=81.7

Q ss_pred             eeeeeeeeecCCCC-CceEEEEEEEEeecCC--CCCCCCChhchHhhcCCCCCeEEEEc-cccCccccCCcceeecccCC
Q psy5567         191 FVARAYTPVTSDEH-HGYMDLVVKVYFKNVH--PKFPDGGKMSQFLENMKVGEPINVSG-PRGRLAYLGNGEFHIRAVSK  266 (314)
Q Consensus       191 ~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~--~~~~~~G~~S~~L~~l~~Gd~v~v~G-P~G~~~y~~~g~f~l~~~~~  266 (314)
                      ...|+||++|++.+ .+.++|+|+++.....  ......|.+|+||+++++||.|.+.| |.|        .|.++.   
T Consensus       208 l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~g--------~F~lp~---  276 (435)
T 1f20_A          208 LQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAP--------SFHLPR---  276 (435)
T ss_dssp             CCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTCEEEEEEECCT--------TSSCCS---
T ss_pred             CCCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCCEEEEEEecCC--------CccCCC---
Confidence            36799999999875 6899999986411100  00112499999999999999999999 555        576654   


Q ss_pred             CCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhC----CCCCccEEEEEEeC
Q psy5567         267 KDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD----PTDNTKMSLIFANQ  314 (314)
Q Consensus       267 ~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~----~~~~~~v~Li~~~r  314 (314)
                            ...++++|||||||||||++|++++...    +....+++|+||+|
T Consensus       277 ------~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R  322 (435)
T 1f20_A          277 ------NPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCR  322 (435)
T ss_dssp             ------CTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEES
T ss_pred             ------CCCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeec
Confidence                  2357899999999999999999988763    12357899999997

>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*

Probab=99.51  E-value=2.9e-14  Score=142.05  Aligned_cols=108  Identities=14%  Similarity=0.226  Sum_probs=82.4

Q ss_pred             ceeeeeeeeecCCCC-CceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCC------eEEEEccccCccccCCcceeec
Q psy5567         190 EFVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGE------PINVSGPRGRLAYLGNGEFHIR  262 (314)
Q Consensus       190 ~~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~GP~G~~~y~~~g~f~l~  262 (314)
                      ....|+||++|++.. .+.++|+|++.......+...+|.+|+||+++.+|+      .|.+.+|.|        .|.++
T Consensus       231 ~l~pR~YSIsSsp~~~~~~i~ltV~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g--------~F~lp  302 (458)
T 3qfs_A          231 RLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKS--------QFRLP  302 (458)
T ss_dssp             BCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECC--------SCCCC
T ss_pred             CCcceeEeeccCcccCCCEEEEEEEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCC--------CcccC
Confidence            357799999999875 688999987532221122235699999999888765      599999999        57665


Q ss_pred             ccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHh---hCCCCCccEEEEEEeC
Q psy5567         263 AVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHIT---KDPTDNTKMSLIFANQ  314 (314)
Q Consensus       263 ~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~---~~~~~~~~v~Li~~~r  314 (314)
                      .         ...++++|||||||||||++|+++..   .++.+..+++|+||+|
T Consensus       303 ~---------~~~~piImIggGTGIAPfrs~lq~r~~l~~~g~~~~~~~Lf~G~R  348 (458)
T 3qfs_A          303 F---------KATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCR  348 (458)
T ss_dssp             S---------STTSCEEEECCGGGGHHHHHHHHHHHHHHHHTCCCCCEEEEEEES
T ss_pred             C---------CCCCceEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEEeC
Confidence            4         23578999999999999999999853   3333356899999997

>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*

Probab=99.50  E-value=1.2e-14  Score=151.00  Aligned_cols=128  Identities=20%  Similarity=0.230  Sum_probs=94.3

Q ss_pred             CCCCcEEEEEeeeCCceeeeeeeeecCCCC-CceEEEEEEEEeecCCC---CCCCCChhchHhhcCCC------------
Q psy5567         175 LPIGQHLSLSATINDEFVARAYTPVTSDEH-HGYMDLVVKVYFKNVHP---KFPDGGKMSQFLENMKV------------  238 (314)
Q Consensus       175 ~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~~---~~~~~G~~S~~L~~l~~------------  238 (314)
                      -.|+|++...++   ....|+||++|++.. .+.++|+|++.....+.   +....|.+|+||+++++            
T Consensus       414 ~~p~~~l~~~lp---~l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~  490 (682)
T 2bpo_A          414 TVPMQFLVESVP---QMTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNL  490 (682)
T ss_dssp             TSCHHHHHHHSC---BCCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCC
T ss_pred             CCCHHHHHHhCc---ccccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhccccccccccccccc
Confidence            357777766553   246799999999875 58899987653111111   23357999999988877            


Q ss_pred             CCeEEEEccccCcc------ccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCC---------CC
Q psy5567         239 GEPINVSGPRGRLA------YLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP---------TD  303 (314)
Q Consensus       239 Gd~v~v~GP~G~~~------y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~---------~~  303 (314)
                      |+.+.++||.|.|.      |..++.|.++.         ....+++|||||||||||++|++++....         ..
T Consensus       491 G~~v~i~GP~G~f~~~~v~v~vr~~~F~Lp~---------~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~  561 (682)
T 2bpo_A          491 PVHYDLNGPRKLFANYKLPVHVRRSNFRLPS---------NPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVS  561 (682)
T ss_dssp             CCCCCSSCGGGTTTTTEECEEEECCSCCCCS---------STTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCC
T ss_pred             ccceeeccCcCcccCceEEEEEecCcccCCC---------CCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCC
Confidence            99999999999872      33334576654         23579999999999999999999887532         22


Q ss_pred             CccEEEEEEeC
Q psy5567         304 NTKMSLIFANQ  314 (314)
Q Consensus       304 ~~~v~Li~~~r  314 (314)
                      ..+++|+||+|
T Consensus       562 ~~~~~L~fG~R  572 (682)
T 2bpo_A          562 LGKHILFYGSR  572 (682)
T ss_dssp             CCCEEEEEEES
T ss_pred             cCCEEEEEecC
Confidence            46899999997

>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*

Probab=99.49  E-value=4.8e-14  Score=144.86  Aligned_cols=107  Identities=16%  Similarity=0.255  Sum_probs=81.4

Q ss_pred             eeeeeeeeecCCCC-CceEEEEEEEEeecCCCCCCCCChhchHhhcCCC-CC-----eEEEEccccCccccCCcceeecc
Q psy5567         191 FVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKV-GE-----PINVSGPRGRLAYLGNGEFHIRA  263 (314)
Q Consensus       191 ~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~-Gd-----~v~v~GP~G~~~y~~~g~f~l~~  263 (314)
                      ...|+||++|++.. .+.++|+|++.......+....|.+|+||+++.+ ||     .|.+.+|.|        .|.++.
T Consensus       392 l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd~~~~~~v~v~~p~g--------~F~lp~  463 (618)
T 3qe2_A          392 LQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKS--------QFRLPF  463 (618)
T ss_dssp             CCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC-----CCEEEEEEECC--------SCCCCS
T ss_pred             cccceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccCCCCcceEEEEEEecC--------cccCCC
Confidence            46799999999865 5788888765322222222356999999999888 88     999999999        576654


Q ss_pred             cCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhh---CCCCCccEEEEEEeC
Q psy5567         264 VSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITK---DPTDNTKMSLIFANQ  314 (314)
Q Consensus       264 ~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~---~~~~~~~v~Li~~~r  314 (314)
                               ....+++|||||||||||++|+++...   ++.+..+++|+||+|
T Consensus       464 ---------~~~~piimIg~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R  508 (618)
T 3qe2_A          464 ---------KATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCR  508 (618)
T ss_dssp             ---------STTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEES
T ss_pred             ---------CCCCCeEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecC
Confidence                     235789999999999999999998763   333357899999997

>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4

Probab=99.48  E-value=3.5e-14  Score=147.60  Aligned_cols=118  Identities=17%  Similarity=0.203  Sum_probs=86.6

Q ss_pred             CCcEEEEEeeeCCceeeeeeeeecCCCC-CceEEEEEEEEeecCC--CCCCCCChhchHhhcCCCCCeEEEEc-cccCcc
Q psy5567         177 IGQHLSLSATINDEFVARAYTPVTSDEH-HGYMDLVVKVYFKNVH--PKFPDGGKMSQFLENMKVGEPINVSG-PRGRLA  252 (314)
Q Consensus       177 ~GQ~v~l~~~~~~~~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~--~~~~~~G~~S~~L~~l~~Gd~v~v~G-P~G~~~  252 (314)
                      |+||+...++   ....|+||++|++.. .+.++|+|++......  ...+..|.+|+||+++++||.|.+.| |.|   
T Consensus       418 p~~~l~~~lp---~l~~R~YSIsSsp~~~~~~i~l~V~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~p~g---  491 (688)
T 1tll_A          418 PATLLLTQLS---LLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAP---  491 (688)
T ss_dssp             CHHHHHHHSC---BCCCEEEEBCSCTTTSTTEEEEEEECCEEETGGGTSCEEECHHHHHHTTCCTTSEEEEEEECCG---
T ss_pred             CHHHHHHhCc---ccceeEEeecCCcccCCCeEEEEEEEEEEecCCCCCCcCCCchhHHHHhCCCCCEEEEEeccCC---
Confidence            4454443332   236799999999875 6889999986411100  00112499999999999999999999 555   


Q ss_pred             ccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhC----CCCCccEEEEEEeC
Q psy5567         253 YLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD----PTDNTKMSLIFANQ  314 (314)
Q Consensus       253 y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~----~~~~~~v~Li~~~r  314 (314)
                           .|.++.         ...++++|||||||||||++|++++...    +....+++|+||+|
T Consensus       492 -----~F~lp~---------~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~R  543 (688)
T 1tll_A          492 -----SFHLPR---------NPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCR  543 (688)
T ss_dssp             -----GGSCCS---------CTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEES
T ss_pred             -----CcccCc---------CCCCCEEEEEcCcchHHHHHHHHHHHHhhhhccCCCCCEEEEEEec
Confidence                 577654         2357899999999999999999988763    22357899999997

>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*

Probab=99.48  E-value=3.1e-14  Score=144.28  Aligned_cols=108  Identities=20%  Similarity=0.317  Sum_probs=79.1

Q ss_pred             eeeeeeeeecCCC-CCceEEEEEEEEeecC--CCCCCCCChhchHhhcC-----------CCCC-------eEEEEcccc
Q psy5567         191 FVARAYTPVTSDE-HHGYMDLVVKVYFKNV--HPKFPDGGKMSQFLENM-----------KVGE-------PINVSGPRG  249 (314)
Q Consensus       191 ~~~R~YTp~s~~~-~~g~l~l~VK~~~~~~--~~~~~~~G~~S~~L~~l-----------~~Gd-------~v~v~GP~G  249 (314)
                      ...|+||++|++. +.+.++|+||++....  ..+.+.+|.+|+||+++           ++||       .|.+.||.|
T Consensus       289 l~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~~~~~~~~~Gd~~~~~~~~V~v~~p~g  368 (539)
T 2qtl_A          289 LQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKISIFPRTT  368 (539)
T ss_dssp             CCCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC--------------CCCEEEEEECSC
T ss_pred             CcceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhccccccCCCCCccccCceEEEEEeeeC
Confidence            4679999999986 5689999999762210  11112459999999877           9999       999999987


Q ss_pred             CccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhh---CC--CCCccEEEEEEeC
Q psy5567         250 RLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITK---DP--TDNTKMSLIFANQ  314 (314)
Q Consensus       250 ~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~---~~--~~~~~v~Li~~~r  314 (314)
                      .       .|.++.         ...++++|||||||||||++|+++...   .+  ....+++|+||+|
T Consensus       369 ~-------~F~Lp~---------~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R  422 (539)
T 2qtl_A          369 N-------SFHLPD---------DPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCR  422 (539)
T ss_dssp             C-------CCCCCS---------STTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEES
T ss_pred             C-------CccCCc---------cCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEEC
Confidence            3       577765         235789999999999999999998532   11  1257899999997

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}

Probab=99.08  E-value=7.2e-11  Score=100.95  Aligned_cols=57  Identities=23%  Similarity=0.378  Sum_probs=38.5

Q ss_pred             CCCCCe-EEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         236 MKVGEP-INVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       236 l~~Gd~-v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      |++||. +.++||+|++       |.++           ..++++|||||||||||++|++++.+++   .+++|+ ++|
T Consensus         1 L~~Gd~vl~v~gP~G~~-------f~~~-----------~~~~~llIaGG~GItPl~sm~~~l~~~~---~~v~l~-g~r   58 (158)
T 3lrx_A            1 MKEGDSLLNVAGPLGTP-------VPME-----------KFGKILAIGAYTGIVEVYPIAKAWQEIG---NDVTTL-HVT   58 (158)
T ss_dssp             -----------CCCCCC-------BCCC-----------CCSEEEEEEETTHHHHHHHHHHHHHHHT---CEEEEE-EEC
T ss_pred             CcCCCEeeEEECCCCCC-------CccC-----------CCCeEEEEEccCcHHHHHHHHHHHHhcC---CcEEEE-EeC
Confidence            589999 6999999962       3221           2579999999999999999999998764   479999 987

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}

Probab=98.81  E-value=3.2e-09  Score=89.23  Aligned_cols=51  Identities=20%  Similarity=0.320  Sum_probs=38.5

Q ss_pred             EEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         242 INVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       242 v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      ++++||+|++       |.+ +          ..++++|||||+||||+++|++++.+++   .+++|+ ++|
T Consensus         3 ~~v~GP~G~~-------~~~-~----------~~~~~llIaGG~GiaPl~sm~~~l~~~~---~~v~l~-g~R   53 (142)
T 3lyu_A            3 LNVAGPLGTP-------VPM-E----------KFGKILAIGAYTGIVEVYPIAKAWQEIG---NDVTTL-HVT   53 (142)
T ss_dssp             ----CCCSCC-------BCC-C----------CCSEEEEEEETTHHHHHHHHHHHHHHTT---CEEEEE-EEE
T ss_pred             eeeeCCCCCC-------ccC-C----------CCCeEEEEECcCcHHHHHHHHHHHHhcC---CcEEEE-EeC
Confidence            5899999963       222 2          2579999999999999999999998765   479999 886

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}

Probab=97.44  E-value=0.00016  Score=64.13  Aligned_cols=47  Identities=47%  Similarity=0.841  Sum_probs=41.9

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      +...+||||.++...+|....|+|||+|.+.+.+.++|+||.++.|.
T Consensus        40 ~~~~pGq~v~l~~~~~g~~~~R~ysi~s~~~~~~~~~l~vk~~~~G~   86 (243)
T 2eix_A           40 VGLPIGQHMSVKATVDGKEIYRPYTPVSSDDEKGYFDLIIKVYEKGQ   86 (243)
T ss_dssp             CCCCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECCTTCH
T ss_pred             cCcCCceEEEEEEeeCCCEEEeeeeecCCCCCCCEEEEEEEEcCCCC
Confidence            45688999999999899999999999998888899999999997654

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*

Probab=97.04  E-value=0.00076  Score=60.92  Aligned_cols=43  Identities=53%  Similarity=1.009  Sum_probs=39.3

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSV   45 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y   45 (314)
                      +...+||||.++...+|....|+||+.|.+.+.+.++|+||.+
T Consensus        45 ~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~l~vk~~   87 (275)
T 1umk_A           45 LGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVY   87 (275)
T ss_dssp             CCCCTTCEEEEEEEETTEEEEEEECCSSCTTCCSEEEEEEECC
T ss_pred             cCCCCCcEEEEEEeeCCcEEEeccccCCccCCCCeEEEEEEEe
Confidence            4567899999999889999999999999888889999999998

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*

Probab=96.83  E-value=0.0015  Score=58.76  Aligned_cols=43  Identities=47%  Similarity=0.765  Sum_probs=39.2

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSV   45 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y   45 (314)
                      +...+||||.++...+|....|+||+.+.+.+.+.++|+||.+
T Consensus        41 ~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~l~vk~~   83 (270)
T 2cnd_A           41 LGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLVKVY   83 (270)
T ss_dssp             CCCCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECC
T ss_pred             cCCCCCCEEEEEeeeCCcEEEEeeccCCCccCCCEEEEEEEEe
Confidence            4578999999999989999999999999887789999999997

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*

Probab=96.51  E-value=0.002  Score=57.17  Aligned_cols=46  Identities=30%  Similarity=0.405  Sum_probs=37.0

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      +...+||||.++...+|....|+||+.+.+.+ +.++|+||.+++|.
T Consensus        29 ~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~-~~l~~~v~~~~~G~   74 (248)
T 1fdr_A           29 LPFTAGQFTKLGLEIDGERVQRAYSYVNSPDN-PDLEFYLVTVPDGK   74 (248)
T ss_dssp             CCCCTTCEEEEEECC---CEEEEEECCSCTTC-SSEEEEEECCTTCS
T ss_pred             CCcCCCCcEEEEccCCCCeeeeeecccCCCCC-CcEEEEEEEeCCCc
Confidence            45689999999998778889999999997765 89999999997654

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*

Probab=96.47  E-value=0.0034  Score=56.08  Aligned_cols=46  Identities=17%  Similarity=0.294  Sum_probs=39.5

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      +...+||||.++...+|....|+||+.+.+.+ +.++|+||.+++|.
T Consensus        29 ~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~~i~~~~~G~   74 (257)
T 2qdx_A           29 LRFKTGQFVMIGLEVDGRPLMRAYSIASPNYE-EHLEFFSIKVPDGP   74 (257)
T ss_dssp             CCCCTTCEEEEEEEETTEEEEEEEECCSCTTS-SEEEEEEECCTTCT
T ss_pred             CccCCCCEEEEEecCCCCceeeeeEeecCCCC-CeEEEEEEEeCCCc
Confidence            45688999999999889889999999997765 89999999987543

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*

Probab=96.24  E-value=0.0044  Score=56.14  Aligned_cols=45  Identities=18%  Similarity=0.224  Sum_probs=38.5

Q ss_pred             cCCcccceEEEEEE-eCCeeeEEeccCCCCCCCceeEEEEeeeeccc
Q psy5567           3 LGLPIGQHLSLSAT-INDEFVARAYTPVTSDEHHGYMDLVVKSVPSI   48 (314)
Q Consensus         3 lglpvg~hv~~~~~-~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~g   48 (314)
                      +...+||||.++.. .+|....|+||+.+.+.+ +.++|+||.++.|
T Consensus        42 ~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~-~~~~l~v~~~~~G   87 (272)
T 2bgi_A           42 LRFRSGEFVMIGLLDDNGKPIMRAYSIASPAWD-EELEFYSIKVPDG   87 (272)
T ss_dssp             CCCCTTCEEEEEEECTTSCEEEEEEECCSCTTC-SEEEEEEECCTTC
T ss_pred             CccCCCCEEEEEeccCCCCeeeeeeeeccCCCC-CeEEEEEEEccCC
Confidence            45688999999998 578889999999997765 8999999998754

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*

Probab=96.07  E-value=0.0065  Score=54.68  Aligned_cols=46  Identities=15%  Similarity=0.225  Sum_probs=39.3

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      +...+||||.++...+|....||||+.+.+. .+.++|+||.++.|.
T Consensus        45 ~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-~~~~~~~v~~~~~G~   90 (271)
T 4fk8_A           45 LRFNNGEFTMVGLEVDGKPLTRAYSIVSPNY-EEHLEFFSIKVQNGP   90 (271)
T ss_dssp             CCCCTTCEEEEEEEETTEEEEEEEECCSCTT-SSSEEEEEECCTTCT
T ss_pred             CCcCCCCEEEEEccCCCceeeeeEeccCCCC-CCcEEEEEEEECCCc
Confidence            4567999999999999999999999999664 468999999987654

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2

Probab=95.62  E-value=0.005  Score=54.76  Aligned_cols=45  Identities=20%  Similarity=0.434  Sum_probs=37.7

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      +...+||||.++.  .|....|+||+.+.+.+.+.++|+||.+++|.
T Consensus        42 ~~~~pGQ~v~l~~--~~~~~~R~ySi~s~~~~~~~l~i~vk~~~~G~   86 (250)
T 1tvc_A           42 VKFEPGQFMDLTI--PGTDVSRSYSPANLPNPEGRLEFLIRVLPEGR   86 (250)
T ss_dssp             CSCCSCCEEEECT--TSCSSSEEECCBCCSSSSCCEEEEECCCTTSS
T ss_pred             cCcCCCcEEEEEe--CCCccccccccCCCCCCCCeEEEEEEECCCCC
Confidence            4567899999985  45567899999998887899999999998664

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*

Probab=95.59  E-value=0.0032  Score=56.75  Aligned_cols=46  Identities=13%  Similarity=0.041  Sum_probs=39.1

Q ss_pred             CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      ...+||||.++...++....|+||+.+.+.+.+.++|+||.++.|.
T Consensus        33 ~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~   78 (262)
T 1ep3_B           33 MDLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIGDETT   78 (262)
T ss_dssp             CCSTTCEEEECCSCTTCCSCEEEECCEEETTTTEEEEEEECCCTTS
T ss_pred             cCCCCceEEEEcCCCCceeeEEEEeeeecCCCCEEEEEEEEecCCc
Confidence            5678999999987656678899999998777899999999998654

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}

Probab=95.29  E-value=0.013  Score=51.54  Aligned_cols=42  Identities=19%  Similarity=0.177  Sum_probs=35.3

Q ss_pred             cCCcccceEEEEEEeCCee--eEEeccCCCCCCCceeEEEEeeee
Q psy5567           3 LGLPIGQHLSLSATINDEF--VARAYTPVTSDEHHGYMDLVVKSV   45 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~--v~RpYTPvs~~~~~g~~~llIK~Y   45 (314)
                      +...+||||.++...+|..  ..||||+.+.+.+ +.++|+||.+
T Consensus        32 ~~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~~-~~~~i~vk~~   75 (243)
T 4eh1_A           32 LDYQPGQYIGIEVTPEGSDYREIRQYSLSHASNG-REYRISVKRE   75 (243)
T ss_dssp             CCCCTTCEEEEEECCSSCSSCEEEEEEBCSCCCS-SCEEEEEECT
T ss_pred             CCcCCCCEEEEEEecCCCccccceeeEeccCCCC-CeEEEEEEEe
Confidence            4567899999999887765  4699999996654 7899999998

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5

Probab=95.13  E-value=0.016  Score=55.21  Aligned_cols=45  Identities=16%  Similarity=0.016  Sum_probs=37.3

Q ss_pred             cCCcccceEEEEEEeCCe--eeEEeccCCCCCCCceeEEEEeeeeccc
Q psy5567           3 LGLPIGQHLSLSATINDE--FVARAYTPVTSDEHHGYMDLVVKSVPSI   48 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~--~v~RpYTPvs~~~~~g~~~llIK~Y~~g   48 (314)
                      +...+||||.++...+|+  ...|+||+.+.+. .++++|+||.++.|
T Consensus       181 ~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~-~~~~~i~Vk~~~~G  227 (396)
T 1gvh_A          181 AEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD-GKGYRIAVKREEGG  227 (396)
T ss_dssp             CCCCTTCEEEEEECCTTCSSCEEEEEECCSCCC-SSCEEEEEECCTTC
T ss_pred             CCCCCCCeEEEEecCCCCccceeecceeccCCC-CCeEEEEEEEcCCC
Confidence            467899999999986664  5789999999766 68999999999743

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1

Probab=95.09  E-value=0.012  Score=51.47  Aligned_cols=44  Identities=16%  Similarity=0.334  Sum_probs=32.3

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      +...+||||.++..  + ...|+||+.+.+.+.+.++|+||.+++|.
T Consensus        28 ~~~~pGq~v~l~~~--~-~~~R~ySi~s~~~~~~~l~l~i~~~~~G~   71 (232)
T 1qfj_A           28 FSFRAGQYLMVVMD--E-RDKRPFSMASTPDEKGFIELHIGASEINL   71 (232)
T ss_dssp             CCCCTTCEEEEESS--S-SCEEEEECCSCTTSTTCEEEEEC------
T ss_pred             CCcCCCCEEEEECC--C-CceeeeecCCCCCCCCcEEEEEEEccCCc
Confidence            35678999999874  2 46899999998888899999999998653

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}

Probab=95.08  E-value=0.016  Score=52.50  Aligned_cols=43  Identities=19%  Similarity=0.251  Sum_probs=35.8

Q ss_pred             cCCcccceEEEEEEe-----------------------------CCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567           3 LGLPIGQHLSLSATI-----------------------------NDEFVARAYTPVTSDEHHGYMDLVVKSV   45 (314)
Q Consensus         3 lglpvg~hv~~~~~~-----------------------------~g~~v~RpYTPvs~~~~~g~~~llIK~Y   45 (314)
                      +...+||||.++...                             ++..+.|+||+.+.+.+.+.++|+||.+
T Consensus        37 ~~~~pGQ~v~l~~p~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~  108 (290)
T 2r6h_A           37 MNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCKNEEETVRAYSMANYPAEGNIITLNVRIA  108 (290)
T ss_dssp             CCCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEEECSCEEEEEECCSCTTCCSEEEEEEECC
T ss_pred             cccCCCceEEEEcccccccccccccchhhcccccccccccccccCCCCcceeeeccCCCCCCCEEEEEEEEe
Confidence            346789999998752                             3567899999999888889999999985

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*

Probab=94.97  E-value=0.022  Score=54.26  Aligned_cols=43  Identities=16%  Similarity=0.115  Sum_probs=36.5

Q ss_pred             cCCcccceEEEEEEeCCe--eeEEeccCCCCCCCceeEEEEeeeec
Q psy5567           3 LGLPIGQHLSLSATINDE--FVARAYTPVTSDEHHGYMDLVVKSVP   46 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~--~v~RpYTPvs~~~~~g~~~llIK~Y~   46 (314)
                      ....+||||.++...+|.  ...|+||+.+.+. .++++|+||.++
T Consensus       183 ~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~-~~~~~i~Vk~~~  227 (403)
T 1cqx_A          183 VNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN-GRTYRISVKREG  227 (403)
T ss_dssp             CCCCTTCEEEEEEEETTTTEEEEEEEECCSCCC-SSCEEEEEECCC
T ss_pred             CCCCCCCEEEEEEecCCCCcceeecceecCCCC-CCeEEEEEEECC
Confidence            367899999999997764  5789999998765 689999999986

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=94.38  E-value=0.036  Score=51.50  Aligned_cols=43  Identities=16%  Similarity=0.239  Sum_probs=36.9

Q ss_pred             CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      ...+||||.++.. +|  ..|+||+.+.+.+.+.++|.||.++.|.
T Consensus        38 ~~~pGQ~v~l~~~-~g--~~R~ySi~s~~~~~~~l~i~Vk~~~~G~   80 (321)
T 2pia_A           38 PFEAGANLTVAVP-NG--SRRTYSLCNDSQERNRYVIAVKRDSNGR   80 (321)
T ss_dssp             CCCTTCEEEEECT-TS--CEEEEECCSCTTCCSEEEEEEECCTTSC
T ss_pred             CCCCCCEEEEECC-CC--CcEEEEeCCCCCCCCeEEEEEEEecCCc
Confidence            5678999999875 44  8899999998888899999999998654

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=94.03  E-value=0.035  Score=51.59  Aligned_cols=44  Identities=18%  Similarity=0.267  Sum_probs=36.0

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      +...+|||+.++.  .+....|+||+.+.+. .+.++|+||.++.|.
T Consensus       137 ~~~~pGQ~v~l~~--~~~~~~R~ySi~s~~~-~~~l~~~vk~~~~G~  180 (338)
T 1krh_A          137 IHFLAGQYVNVTL--PGTTETRSYSFSSQPG-NRLTGFVVRNVPQGK  180 (338)
T ss_dssp             CCCCTTCEEEEEC--TTSSCEEEEECCSCTT-CSEEEEEEECCTTCH
T ss_pred             CCcCCCCeEEEEc--CCCCccccccccCCCC-CCeEEEEEEEcCCCC
Confidence            4567899999975  4545789999999777 789999999998653

>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*

Probab=93.01  E-value=0.069  Score=50.94  Aligned_cols=42  Identities=14%  Similarity=0.199  Sum_probs=34.9

Q ss_pred             CCcccceEEEEEEeC--Ce--eeEEeccCCCCCCCceeEEEEeeeec
Q psy5567           4 GLPIGQHLSLSATIN--DE--FVARAYTPVTSDEHHGYMDLVVKSVP   46 (314)
Q Consensus         4 glpvg~hv~~~~~~~--g~--~v~RpYTPvs~~~~~g~~~llIK~Y~   46 (314)
                      ...+||||.++..+.  |.  ...|+||+.+.+. .++++|.||.+.
T Consensus       183 ~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~-~~~~~i~Vk~~~  228 (399)
T 4g1v_A          183 PITPGQYITVNTHPIRQENQYDALRHYSLCSAST-KNGLRFAVKMEA  228 (399)
T ss_dssp             CCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCC-TTCEEEEEECCC
T ss_pred             CCCCCCEEEEEEeCCCCCCccceeeeecccCCCC-CCeEEEEEEecc
Confidence            567899999999766  54  5789999988665 488999999985

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*

Probab=92.54  E-value=0.063  Score=49.29  Aligned_cols=43  Identities=14%  Similarity=0.047  Sum_probs=34.2

Q ss_pred             cCCcccceEEEEEEeC-----Ce-eeEEeccCCCCCCC----ceeEEEEeeee
Q psy5567           3 LGLPIGQHLSLSATIN-----DE-FVARAYTPVTSDEH----HGYMDLVVKSV   45 (314)
Q Consensus         3 lglpvg~hv~~~~~~~-----g~-~v~RpYTPvs~~~~----~g~~~llIK~Y   45 (314)
                      +...+||||.++....     |. ...|+||+.|.+.+    .+.++|+||.+
T Consensus        59 ~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~  111 (311)
T 3lo8_A           59 VPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRA  111 (311)
T ss_dssp             SCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEEECC
T ss_pred             CcccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEEEEEEEE
Confidence            4578999999987642     44 37899999997753    58999999986

>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*

Probab=92.38  E-value=0.067  Score=49.31  Aligned_cols=44  Identities=23%  Similarity=0.231  Sum_probs=35.4

Q ss_pred             cCCcccceEEEEEE---eCCee-eEEeccCCCCCC----CceeEEEEeeeec
Q psy5567           3 LGLPIGQHLSLSAT---INDEF-VARAYTPVTSDE----HHGYMDLVVKSVP   46 (314)
Q Consensus         3 lglpvg~hv~~~~~---~~g~~-v~RpYTPvs~~~----~~g~~~llIK~Y~   46 (314)
                      +...+||||.++..   .+|+. ..|+||..|.+.    +.+.++|+||.++
T Consensus        64 ~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~  115 (310)
T 3vo2_A           64 IPYREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLV  115 (310)
T ss_dssp             CCCCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTSSSEEEEEEECCE
T ss_pred             CcccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCCCCCEEEEEEEEEE
Confidence            45678999999874   45665 479999999775    5789999999974

>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}

Probab=89.59  E-value=0.16  Score=45.39  Aligned_cols=41  Identities=12%  Similarity=0.041  Sum_probs=33.1

Q ss_pred             CcccceEEEEEEe-CCeeeEEeccCCCCCCCceeEEEEeeeecc
Q psy5567           5 LPIGQHLSLSATI-NDEFVARAYTPVTSDEHHGYMDLVVKSVPS   47 (314)
Q Consensus         5 lpvg~hv~~~~~~-~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~   47 (314)
                      ..+||||.++... ++..+.|+||+.+.+.  +.+++.+|...+
T Consensus        39 ~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~--~~~~i~~~~~~~   80 (252)
T 2gpj_A           39 DQESAYIKLLFPQAGERPLMRTYTIRQQRD--DEIDVDFVLHDT   80 (252)
T ss_dssp             CCTTCEEEEEECCTTSCCEEEEEECCEEET--TEEEEEEECCSS
T ss_pred             CCCCCeEEEEcccCCCCCCCCceeeeccCC--CEEEEEEEEeCC
Confidence            4789999999885 5678999999998554  678888887754

>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*

Probab=81.87  E-value=0.5  Score=43.21  Aligned_cols=44  Identities=14%  Similarity=0.186  Sum_probs=33.2

Q ss_pred             cCCcccceEEEEEEe---CCee--------eEEeccCCCCCC----CceeEEEEeeeec
Q psy5567           3 LGLPIGQHLSLSATI---NDEF--------VARAYTPVTSDE----HHGYMDLVVKSVP   46 (314)
Q Consensus         3 lglpvg~hv~~~~~~---~g~~--------v~RpYTPvs~~~----~~g~~~llIK~Y~   46 (314)
                      +...+||||.++..-   +|+.        ..|+||..|.+.    +.+.++|+||.++
T Consensus        62 ~~~~pGQ~v~l~~~~~~~~g~~~~~~~~~~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~  120 (314)
T 2rc5_A           62 YPYVIGQSGGVIPPGEDPEKKAKGLADVGYTVRLYSIASPSYSFGMKEDNIEFIIKRDN  120 (314)
T ss_dssp             CCCCTTCEEEEECSSBCHHHHHTTCSCCBCCCEEEECCSCTTCGGGCCCEEEEEEECCB
T ss_pred             CcccCCCEEEEECCCCccccCccchhhcCCCceeeeccCCccccCCCCCEEEEEEEEEe
Confidence            345689999998642   1333        679999999775    5789999999963

>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*

Probab=81.60  E-value=0.77  Score=42.03  Aligned_cols=43  Identities=21%  Similarity=0.223  Sum_probs=32.9

Q ss_pred             cCCcccceEEEEEEe---CCe-eeEEeccCCCCCC----CceeEEEEeeee
Q psy5567           3 LGLPIGQHLSLSATI---NDE-FVARAYTPVTSDE----HHGYMDLVVKSV   45 (314)
Q Consensus         3 lglpvg~hv~~~~~~---~g~-~v~RpYTPvs~~~----~~g~~~llIK~Y   45 (314)
                      +...+||||.++..-   +|. ...|+||..|.+.    +.+.++|+||..
T Consensus        68 ~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~  118 (314)
T 1fnb_A           68 IPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRL  118 (314)
T ss_dssp             CCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSSSCEEEEEEECC
T ss_pred             CCcCCCCEEEEecCCCCcCCCcCCceeEecCCCCcccCCCCCEEEEEEEEE
Confidence            346789999998642   354 3679999999765    368999999974

>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}

Probab=80.14  E-value=1.4  Score=42.14  Aligned_cols=42  Identities=19%  Similarity=0.245  Sum_probs=33.3

Q ss_pred             cCCcccceEEEEEE---eCCee-eEEeccCCCCCCC----ceeEEEEeee
Q psy5567           3 LGLPIGQHLSLSAT---INDEF-VARAYTPVTSDEH----HGYMDLVVKS   44 (314)
Q Consensus         3 lglpvg~hv~~~~~---~~g~~-v~RpYTPvs~~~~----~g~~~llIK~   44 (314)
                      +...+||||.++..   .+|+. ..|+||+.+.+.+    .+.++|+||.
T Consensus       154 ~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p~~~~~~~~~l~l~Vk~  203 (402)
T 2b5o_A          154 LRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCVRQ  203 (402)
T ss_dssp             CCCCTTCEEEEECSSEETTTEECCCEEEEBCSCTTTTTTSSCEEEEEEEC
T ss_pred             CCcCCCCEEEEEecCCCcCCCccCceeeeccCCCccccCCCCEEEEEEEE
Confidence            34678999999864   34664 6799999997753    7899999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	314
d2cnda1	114	b.43.4.2 (A:11-124) Nitrate reductase core domain	6e-25
d2cnda1	114	b.43.4.2 (A:11-124) Nitrate reductase core domain	7e-04
d1umka1	124	b.43.4.2 (A:30-153) cytochrome b5 reductase {Human	5e-23
d1umka2	147	c.25.1.1 (A:154-300) cytochrome b5 reductase {Huma	5e-11
d1cqxa2	111	b.43.4.2 (A:151-261) Flavohemoglobin, central doma	2e-09
d1fnda1	136	b.43.4.2 (A:19-154) Ferredoxin reductase (flavodox	3e-08
d2bmwa1	133	b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxi	2e-07
d2cnda2	146	c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea	3e-06
d1gvha2	107	b.43.4.2 (A:147-253) Flavohemoglobin, central doma	4e-06
d1a8pa1	99	b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxi	7e-06
d2bmwa2	162	c.25.1.1 (A:142-303) Ferredoxin reductase (flavodo	7e-06
d1tvca1	109	b.43.4.2 (A:2-110) Methane monooxygenase component	5e-05
d1fdra1	99	b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxi	5e-05
d1ep3b1	101	b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B,	6e-05
d1a8pa2	158	c.25.1.1 (A:101-258) Ferredoxin reductase (flavodo	1e-04
d1qfja2	135	c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase	1e-04
d1cqxa3	142	c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal d	1e-04
d1krha2	133	c.25.1.2 (A:206-338) Benzoate dioxygenase reductas	3e-04
d1fdra2	148	c.25.1.1 (A:101-248) Ferredoxin reductase (flavodo	3e-04
d1ep3b2	160	c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase	6e-04
d1tvca2	141	c.25.1.2 (A:111-251) Methane monooxygenase compone	6e-04
d2piaa1	103	b.43.4.2 (A:1-103) Phthalate dioxygenase reductase	6e-04
d1gvha3	143	c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal d	7e-04
d1ddga2	153	c.25.1.4 (A:447-599) Sulfite reductase flavoprotei	8e-04
d1fnda2	160	c.25.1.1 (A:155-314) Ferredoxin reductase (flavodo	0.001
d1qfja1	97	b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase {E	0.001
d1jb9a2	154	c.25.1.1 (A:163-316) Ferredoxin reductase (flavodo	0.001
d1krha1	100	b.43.4.2 (A:106-205) Benzoate dioxygenase reductas	0.001

>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]} Length = 114

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Nitrate reductase core domain
species: Corn (Zea mays) [TaxId: 4577]

 Score = 94.8 bits (235), Expect = 6e-25
 Identities = 55/163 (33%), Positives = 77/163 (47%), Gaps = 51/163 (31%)

Query: 93  KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVS 152
           ++  +L  K E++ D R FRF LPS +                                 
Sbjct: 2   RIHCRLVAKKELSRDVRLFRFSLPSPDQ-------------------------------- 29

Query: 153 FWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVV 212
                               LGLPIG+H+ + ATI  +   RAYTP +  +  G+ DL+V
Sbjct: 30  -------------------VLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLV 70

Query: 213 KVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLG 255
           KVYFKN HPKFP+GG M+Q+L+++ VG  I+V GP G + Y G
Sbjct: 71  KVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTG 113

>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]} Length = 114

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Nitrate reductase core domain
species: Corn (Zea mays) [TaxId: 4577]

 Score = 36.6 bits (84), Expect = 7e-04
 Identities = 20/46 (43%), Positives = 28/46 (60%)

Query: 1  AWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVP 46
            LGLPIG+H+ + ATI  +   RAYTP +  +  G+ DL+VK   
Sbjct: 29 QVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLVKVYF 74

>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.9 bits (222), Expect = 5e-23
 Identities = 68/170 (40%), Positives = 88/170 (51%), Gaps = 51/170 (30%)

Query: 86  TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANIL 145
           TL  PD+K PL+L ++  I+HDTR FRF LPS                            
Sbjct: 5   TLESPDIKYPLRLIDREIISHDTRRFRFALPS---------------------------- 36

Query: 146 TPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHH 205
                                      LGLP+GQH+ LSA I+   V R YTP++SD+  
Sbjct: 37  -----------------------PQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDK 73

Query: 206 GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLG 255
           G++DLV+KVYFK+ HPKFP GGKMSQ+LE+M++G+ I   GP G L Y G
Sbjct: 74  GFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQG 123

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (138), Expect = 5e-11
 Identities = 33/58 (56%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 257 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           G+F IR   KK  P    V  + MIAGGTGITPMLQ++R I KDP D+T   L+FANQ
Sbjct: 1   GKFAIRP-DKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ 57

>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 111

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Alcaligenes eutrophus [TaxId: 106590]

 Score = 52.4 bits (125), Expect = 2e-09
 Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 6/88 (6%)

Query: 165 EPPFHFAWLGLPIGQHLSLSATINDEF--VARAYTPVTSDEHHGYMDLVVKVYFKNVHPK 222
           EP      +    GQ+ S++  +        R Y+         Y   V +         
Sbjct: 25  EPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPNGRTYRISVKREG----GGP 80

Query: 223 FPDGGKMSQFLENMKVGEPINVSGPRGR 250
            P G   +   +++ VG+ + ++ P G 
Sbjct: 81  QPPGYVSNLLHDHVNVGDQVKLAAPYGS 108

>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 136

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 49.3 bits (117), Expect = 3e-08
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 8/90 (8%)

Query: 169 HFAWLGLPIGQHLSLSATINDEF----VARAY----TPVTSDEHHGYMDLVVKVYFKNVH 220
           H   +    GQ + +     D+       R Y    + +        + L VK       
Sbjct: 46  HEGEIPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTND 105

Query: 221 PKFPDGGKMSQFLENMKVGEPINVSGPRGR 250
                 G  S FL ++K G  + ++GP G+
Sbjct: 106 AGETIKGVCSNFLCDLKPGAEVKLTGPVGK 135

>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 133

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

 Score = 47.1 bits (111), Expect = 2e-07
 Identities = 14/124 (11%), Positives = 37/124 (29%), Gaps = 10/124 (8%)

Query: 136 KKKNPIANILTPFQRVSFWCS----RVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEF 191
           +   P    +   + +         + +    +     +   G  IG             
Sbjct: 8   RPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKY-IEGQSIGIIPPGVDKNGKPE 66

Query: 192 VARAYTPVTSDEHHGYMDLVVKVYFKNVHP-----KFPDGGKMSQFLENMKVGEPINVSG 246
             R Y+  ++       D  + +  + +            G  S +L +++ G  + ++G
Sbjct: 67  KLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITG 126

Query: 247 PRGR 250
           P G+
Sbjct: 127 PVGK 130

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} Length = 146

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Nitrate reductase
species: Corn (Zea mays) [TaxId: 4577]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 8/59 (13%)

Query: 257 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD-PTDNTKMSLIFANQ 314
           G F I    +           L+MI GG+GITPM Q+++ + +D P D+T+M L++AN+
Sbjct: 1   GSFVINGKQRNARR-------LAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANR 52

>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]} Length = 107

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Escherichia coli [TaxId: 562]

 Score = 42.8 bits (100), Expect = 4e-06
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 11/88 (12%)

Query: 165 EPPFHFAWLGLPIGQHLSLSATINDEFV-ARAYTPVTSDEHHGYMDLVVKVYFKNVHPKF 223
           EP    A      GQ+L +                +T         +           K 
Sbjct: 27  EPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDGKGYRI---------AVKR 77

Query: 224 PDGGKMSQFL-ENMKVGEPINVSGPRGR 250
            +GG++S +L  +  VG+ + +  P G 
Sbjct: 78  EEGGQVSNWLHNHANVGDVVKLVAPAGD 105

>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]} Length = 99

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Azotobacter vinelandii [TaxId: 354]

 Score = 41.9 bits (98), Expect = 7e-06
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 17/103 (16%)

Query: 151 VSFWCSRVVS-APESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMD 209
           V  W   + S      P   F       GQ + +   ++   + RAY+  + +       
Sbjct: 11  VHHWNDTLFSFKTTRNPSLRFEN-----GQFVMIGLEVDGRPLMRAYSIASPNYEEHLEF 65

Query: 210 LVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVS-GPRGRL 251
             +KV            G ++  L+++K G+ + VS  P G L
Sbjct: 66  FSIKVQ----------NGPLTSRLQHLKEGDELMVSRKPTGTL 98

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

 Score = 43.0 bits (100), Expect = 7e-06
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 5/42 (11%)

Query: 267 KDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMS 308
            DP  N+      M+AGGTGITPM   +  + KD        
Sbjct: 3   DDPEANV-----IMLAGGTGITPMRTYLWRMFKDAERAANPE 39

>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} Length = 109

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

 Score = 39.7 bits (92), Expect = 5e-05
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 10/72 (13%)

Query: 178 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMK 237
           GQ + L  TI    V+R+Y+P       G ++ +++V         P+G        + +
Sbjct: 47  GQFMDL--TIPGTDVSRSYSPANLPNPEGRLEFLIRVL--------PEGRFSDYLRNDAR 96

Query: 238 VGEPINVSGPRG 249
           VG+ ++V GP G
Sbjct: 97  VGQVLSVKGPLG 108

>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]} Length = 99

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.3 bits (91), Expect = 5e-05
 Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 15/100 (15%)

Query: 150 RVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMD 209
           +V  W   + S     P   F       GQ   L   I+ E V RAY+ V S ++     
Sbjct: 10  KVQNWTDALFSLTVHAPVLPF-----TAGQFTKLGLEIDGERVQRAYSYVNSPDNPDLEF 64

Query: 210 LVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRG 249
            +V V            GK+S  L  +K G+ + V     
Sbjct: 65  YLVTV----------PDGKLSPRLAALKPGDEVQVVSEAA 94

>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 101

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

 Score = 39.4 bits (91), Expect = 6e-05
 Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 16/93 (17%)

Query: 158 VVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFK 217
           V+     +            GQ L L+       + R  +  + D+      ++ ++   
Sbjct: 23  VLKGTLVDEMDL-------PGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIG-- 73

Query: 218 NVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 250
                  D    +  L  ++ G  ++V GP G 
Sbjct: 74  -------DETTGTYKLSKLESGAKVDVMGPLGN 99

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 7/30 (23%), Positives = 14/30 (46%)

Query: 278 LSMIAGGTGITPMLQLVRHITKDPTDNTKM 307
           L M++ GTG+ P + L++           +
Sbjct: 10  LYMLSTGTGLAPFMSLIQDPEVYERFEKVV 39

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 6/30 (20%), Positives = 11/30 (36%)

Query: 280 MIAGGTGITPMLQLVRHITKDPTDNTKMSL 309
           +IAGGTG +    ++        +      
Sbjct: 10  LIAGGTGFSYARSILLTALARNPNRDITIY 39

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 8/35 (22%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 280 MIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           +I+GG G+TPM+ +++   + P    ++  +   +
Sbjct: 10  LISGGVGLTPMVSMLKVALQAP--PRQVVFVHGAR 42

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 280 MIAGGTGITPMLQLVRHITKDPTDN 304
           M+AGGTGI P L +++ + +  +++
Sbjct: 10  MLAGGTGIAPFLSMLQVLEQKGSEH 34

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]} Length = 148

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 278 LSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
           L M+A GT I P L ++R   KD      + L+ A +
Sbjct: 9   LWMLATGTAIGPYLSILRLG-KDLDRFKNLVLVHAAR 44

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

 Score = 37.4 bits (86), Expect = 6e-04
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 280 MIAGGTGITPMLQLVRHITKDPTDNT 305
           +I GG G+ P+ +L + + K     T
Sbjct: 13  IIGGGIGVPPLYELAKQLEKTGCQMT 38

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} Length = 141

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

 Score = 37.3 bits (85), Expect = 6e-04
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 280 MIAGGTGITPMLQLVRHITKDPTDN 304
            +AGGTG+ P++ +VR + +    N
Sbjct: 13  FVAGGTGLAPVVSMVRQMQEWTAPN 37

>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} Length = 103

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

 Score = 36.6 bits (84), Expect = 6e-04
 Identities = 22/156 (14%), Positives = 39/156 (25%), Gaps = 63/156 (40%)

Query: 94  VPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSF 153
           + LK+  K +I  D   F    P    +                                
Sbjct: 9   LRLKIASKEKIARDIWSFELTDPQGAPL-------------------------------- 36

Query: 154 WCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVK 213
                       PPF         G +L+++         R Y+     +      + V 
Sbjct: 37  ------------PPF-------EAGANLTVAVPNGSR---RTYSLCNDSQERNRYVIAV- 73

Query: 214 VYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPR 248
                   +  +G   S    ++   G+ + VS PR
Sbjct: 74  -------KRDSNGRGGSISFIDDTSEGDAVEVSLPR 102

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.2 bits (85), Expect = 7e-04
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 280 MIAGGTGITPMLQLVRHITKDP 301
           +I+ G G TPML ++  + K  
Sbjct: 11  LISAGVGQTPMLAMLDTLAKAG 32

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (85), Expect = 8e-04
 Identities = 8/34 (23%), Positives = 10/34 (29%)

Query: 280 MIAGGTGITPMLQLVRHITKDPTDNTKMSLIFAN 313
           MI  GTGI P    ++    D             
Sbjct: 11  MIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNP 44

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 5/39 (12%)

Query: 267 KDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNT 305
           KDP   +      M+  GTGI P    +  +  +  D+ 
Sbjct: 5   KDPNATI-----IMLGTGTGIAPFRSFLWKMFFEKHDDY 38

>d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} Length = 97

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 35.6 bits (81), Expect = 0.001
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 15/96 (15%)

Query: 159 VSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKN 218
           V      P   F++     GQ+L +   + DE   R ++  ++ +  G+++L +      
Sbjct: 17  VYRVRIVPDAAFSF---RAGQYLMV---VMDERDKRPFSMASTPDEKGFIELHIG----- 65

Query: 219 VHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYL 254
                         ++ +     I V  P G  A+L
Sbjct: 66  ---ASEINLYAKAVMDRILKDHQIVVDIPHGE-AWL 97

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 5/30 (16%)

Query: 268 DPPTNLKVTQLSMIAGGTGITPMLQLVRHI 297
           DP          MIA GTG+ P    +R +
Sbjct: 1   DPNATH-----IMIATGTGVAPFRGYLRRM 25

>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 100

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

 Score = 35.5 bits (81), Expect = 0.001
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 16/93 (17%)

Query: 158 VVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFK 217
            +   + +P  HF       GQ++++  T+      R+Y+  +   +     +V  V   
Sbjct: 22  DIQLDDGQPDIHF-----LAGQYVNV--TLPGTTETRSYSFSSQPGNRLTGFVVRNVPQG 74

Query: 218 NVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 250
            +                 K G+ ++ +GP G 
Sbjct: 75  KMSE---------YLSVQAKAGDKMSFTGPFGS 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	314
d1umka1	124	cytochrome b5 reductase {Human (Homo sapiens) [Tax	99.91
d2cnda1	114	Nitrate reductase core domain {Corn (Zea mays) [Ta	99.89
d1fdra1	99	Ferredoxin reductase (flavodoxin reductase) N-term	99.79
d1cqxa2	111	Flavohemoglobin, central domain {Alcaligenes eutro	99.77
d1gvha2	107	Flavohemoglobin, central domain {Escherichia coli	99.76
d1a8pa1	99	Ferredoxin reductase (flavodoxin reductase) N-term	99.74
d1krha1	100	Benzoate dioxygenase reductase {Acinetobacter sp.	99.74
d2piaa1	103	Phthalate dioxygenase reductase {Pseudomonas cepac	99.71
d1tvca1	109	Methane monooxygenase component C, MmoC {Methyloco	99.71
d1ep3b1	101	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	99.7
d1qfja1	97	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	99.68
d1fnda1	136	Ferredoxin reductase (flavodoxin reductase) N-term	99.57
d2bmwa1	133	Ferredoxin reductase (flavodoxin reductase) N-term	99.57
d1jb9a1	157	Ferredoxin reductase (flavodoxin reductase) N-term	99.22
d1umka2	147	cytochrome b5 reductase {Human (Homo sapiens) [Tax	99.19
d2cnda2	146	Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}	99.01
d2piaa2	120	Phthalate dioxygenase reductase {Pseudomonas cepac	98.85
d2cnda1	114	Nitrate reductase core domain {Corn (Zea mays) [Ta	98.41
d1umka1	124	cytochrome b5 reductase {Human (Homo sapiens) [Tax	98.2
d1tvca2	141	Methane monooxygenase component C, MmoC {Methyloco	98.12
d1fdra1	99	Ferredoxin reductase (flavodoxin reductase) N-term	97.86
d1a8pa1	99	Ferredoxin reductase (flavodoxin reductase) N-term	97.62
d1tvca1	109	Methane monooxygenase component C, MmoC {Methyloco	97.07
d1qfja1	97	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	96.79
d1cqxa2	111	Flavohemoglobin, central domain {Alcaligenes eutro	96.65
d2piaa1	103	Phthalate dioxygenase reductase {Pseudomonas cepac	96.33
d1gvha2	107	Flavohemoglobin, central domain {Escherichia coli	96.14
d1ep3b1	101	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	95.93
d1krha1	100	Benzoate dioxygenase reductase {Acinetobacter sp.	95.2
d1f20a1	270	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	95.08
d1ddga1	221	Sulfite reductase flavoprotein {Escherichia coli [	94.08
d1ja1a1	279	NADPH-cytochrome p450 reductase {Rat (Rattus norve	91.15

>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.9e-24  Score=174.98  Aligned_cols=122  Identities=57%  Similarity=1.048  Sum_probs=110.9

Q ss_pred             ccccccCCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCC
Q psy5567          83 ELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAP  162 (314)
Q Consensus        83 ~~~~~l~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (314)
                      +..++.||..+++++|++++++|+|++.|+|+++++....                                        
T Consensus         2 p~~t~~~P~~~~~~~v~~~~~it~d~~~f~f~~p~~~~~~----------------------------------------   41 (124)
T d1umka1           2 PAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHIL----------------------------------------   41 (124)
T ss_dssp             CCBSCCCTTCCEEEEEEEEEECSSSEEEEEEECSSTTCBC----------------------------------------
T ss_pred             CCccccCCCcCEEEEEEEEEEeCCCeEEEEEEcCCccccc----------------------------------------
Confidence            3457889999999999999999999999999998875433                                        


Q ss_pred             CCCCCcccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeE
Q psy5567         163 ESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPI  242 (314)
Q Consensus       163 ~~~~~~~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v  242 (314)
                                 .+.+|||+.+.+..++....|+||++|.+.+.|+++|.||++....+.++++||.+|.+|++|++||.|
T Consensus        42 -----------~~~~Gq~v~v~~~~~~~~~~R~Ys~~s~~~~~g~~~~~vk~~~~~~~~~~~~Gg~~s~~l~~l~~GD~v  110 (124)
T d1umka1          42 -----------GLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTI  110 (124)
T ss_dssp             -----------CCCTTCEEEEEEEETTEEEEEEECCSSCTTCCSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTTCEE
T ss_pred             -----------ccceeeEEEEEecccceeEEEeeccCCcccCCceEEEEEEecccccccccCCCcchHHHHhcCCCCCEE
Confidence                       789999999999988989999999999999999999999988766677888999999999999999999


Q ss_pred             EEEccccCccccC
Q psy5567         243 NVSGPRGRLAYLG  255 (314)
Q Consensus       243 ~v~GP~G~~~y~~  255 (314)
                      +++||.|+|.|+|
T Consensus       111 ~v~gP~G~F~y~g  123 (124)
T d1umka1         111 EFRGPSGLLVYQG  123 (124)
T ss_dssp             EEEEEECSEEEEE
T ss_pred             EEECCeeeeEECC
Confidence            9999999988875

>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Nitrate reductase core domain
species: Corn (Zea mays) [TaxId: 4577]

Probab=99.89  E-value=2.8e-23  Score=166.93  Aligned_cols=112  Identities=50%  Similarity=0.918  Sum_probs=102.5

Q ss_pred             eEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccccc
Q psy5567          93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAW  172 (314)
Q Consensus        93 ~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (314)
                      +.+++|++++++|+|++.|+|++|++....                                                  
T Consensus         2 k~~~klv~~~~it~d~~~~~f~~p~~~~~~--------------------------------------------------   31 (114)
T d2cnda1           2 RIHCRLVAKKELSRDVRLFRFSLPSPDQVL--------------------------------------------------   31 (114)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEECSSTTCCC--------------------------------------------------
T ss_pred             cEEEEEEEEEEcCCCeEEEEEECCCccccc--------------------------------------------------
Confidence            578999999999999999999998775433                                                  


Q ss_pred             CCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCcc
Q psy5567         173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLA  252 (314)
Q Consensus       173 ~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~  252 (314)
                       .+++|||+.+.++.++....|+|||++.+.+.++++|+||.+....+.+++++|.+|.||++|++||+|+++||.|+|.
T Consensus        32 -~~~~Gq~v~v~~~~~~~~~~R~Ys~~s~~~~~~~~~~~ik~~~~~~~~~~~~gG~~s~~l~~l~~Gd~v~i~gP~G~F~  110 (114)
T d2cnda1          32 -GLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVE  110 (114)
T ss_dssp             -CCCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECCCSSCBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEE
T ss_pred             -CccceEEEEEEeecccceEEeeeccCCCCCCCCEEEEEEEeccCCCccccccCchhHHHHhhCCCCCEEEEECCceeeE
Confidence             7899999999999999889999999999999999999999986666778889999999999999999999999999999


Q ss_pred             ccC
Q psy5567         253 YLG  255 (314)
Q Consensus       253 y~~  255 (314)
                      |+|
T Consensus       111 y~g  113 (114)
T d2cnda1         111 YTG  113 (114)
T ss_dssp             CCS
T ss_pred             ECC
Confidence            886

>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3.7e-19  Score=140.45  Aligned_cols=94  Identities=23%  Similarity=0.285  Sum_probs=82.3

Q ss_pred             CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567          91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF  170 (314)
Q Consensus        91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      .+|.+++|++++.+|++++.|+|+.|.    .                                                
T Consensus         1 a~w~~a~V~~v~~~t~~v~~l~~~~p~----~------------------------------------------------   28 (99)
T d1fdra1           1 ADWVTGKVTKVQNWTDALFSLTVHAPV----L------------------------------------------------   28 (99)
T ss_dssp             CCEEEEEEEEEEECSSSEEEEEEECCC----C------------------------------------------------
T ss_pred             CCcEEEEEEEEEEcCCCEEEEEEcCCC----C------------------------------------------------
Confidence            369999999999999999999998642    2                                                


Q ss_pred             ccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEcccc
Q psy5567         171 AWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRG  249 (314)
Q Consensus       171 ~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G  249 (314)
                         .+.||||++|.++.+++...|+||++|.+.+ +.++|+||++         ++|.+|+||++|++||+|.++||.|
T Consensus        29 ---~f~pGQ~v~l~~~~~g~~~~R~YSi~s~p~~-~~~~~~vk~~---------~~G~~S~~l~~lk~GD~v~v~gP~~   94 (99)
T d1fdra1          29 ---PFTAGQFTKLGLEIDGERVQRAYSYVNSPDN-PDLEFYLVTV---------PDGKLSPRLAALKPGDEVQVVSEAA   94 (99)
T ss_dssp             ---CCCTTCEEEEEECC---CEEEEEECCSCTTC-SSEEEEEECC---------TTCSSHHHHHTCCTTCEEEEESSCB
T ss_pred             ---CCCCCcEEEeccCCCCCcEEEEEccCCCCCC-ceeEEEEEEe---------cCcHHHHHHhhCCCCCEEEECcCCC
Confidence               6899999999998888888999999998876 7899999988         8899999999999999999999776

>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=99.77  E-value=2e-18  Score=137.81  Aligned_cols=103  Identities=18%  Similarity=0.199  Sum_probs=86.1

Q ss_pred             ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccc
Q psy5567          92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFA  171 (314)
Q Consensus        92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (314)
                      .|++++|++++++|+|++.|+|++++.....                                                 
T Consensus         3 g~r~~~V~~~~~~t~dv~~~~l~~~~~~~~~-------------------------------------------------   33 (111)
T d1cqxa2           3 GWRTFVIREKRPESDVITSFILEPADGGPVV-------------------------------------------------   33 (111)
T ss_dssp             SCEEEEEEEEEECSSSEEEEEEEETTCCCCC-------------------------------------------------
T ss_pred             CceEEEEEEEEEeCCCcEEEEEEeCCcCccc-------------------------------------------------
Confidence            5899999999999999999999988764332                                                 


Q ss_pred             cCCCCCCcEEEEEeeeCC--ceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccc
Q psy5567         172 WLGLPIGQHLSLSATIND--EFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPR  248 (314)
Q Consensus       172 ~~~~~~GQ~v~l~~~~~~--~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~  248 (314)
                        .+.||||+.|.++.++  ....|+||++|.+++ +.++|.||++    ..+..++|.+|+||+ +|++||.|.++||+
T Consensus        34 --~~~~GQ~v~l~~~~~~~~~~~~R~ySi~s~p~~-~~~~~~v~~~----~~~~~~~G~~S~~l~~~l~~Gd~v~v~gP~  106 (111)
T d1cqxa2          34 --NFEPGQYTSVAIDVPALGLQQIRQYSLSDMPNG-RTYRISVKRE----GGGPQPPGYVSNLLHDHVNVGDQVKLAAPY  106 (111)
T ss_dssp             --CCCTTCEEEEEEEETTTTEEEEEEEECCSCCCS-SCEEEEEECC----CBTTBCCCHHHHHHHHHCCTTCEEEECCCB
T ss_pred             --CCCCCCEEEEEeecCCCcceeeeeccccCCccC-CCeEEEEEEe----cCCCcccchhHHHHHhcCCCCCEEEEEccC
Confidence              7899999999987653  467899999998865 6799999975    112225699999995 79999999999999


Q ss_pred             cC
Q psy5567         249 GR  250 (314)
Q Consensus       249 G~  250 (314)
                      |+
T Consensus       107 G~  108 (111)
T d1cqxa2         107 GS  108 (111)
T ss_dssp             CS
T ss_pred             eE
Confidence            95

>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=3e-18  Score=135.90  Aligned_cols=100  Identities=19%  Similarity=0.254  Sum_probs=85.1

Q ss_pred             CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567          91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF  170 (314)
Q Consensus        91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      ..|++++|++++++|+|+++|+|++++.....                                                
T Consensus         4 ~g~~~~~v~~~~~~t~~~~~~~l~~~d~~~~~------------------------------------------------   35 (107)
T d1gvha2           4 EGTRDFRIVAKTPRSALITSFELEPVDGGAVA------------------------------------------------   35 (107)
T ss_dssp             SSEEEEEEEEEEECSSSEEEEEEEETTCCCCC------------------------------------------------
T ss_pred             CCCEEEEEEEEEEeCCCeEEEEEEcCCcCccc------------------------------------------------
Confidence            36899999999999999999999987654322                                                


Q ss_pred             ccCCCCCCcEEEEEeeeCCc--eeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEcc
Q psy5567         171 AWLGLPIGQHLSLSATINDE--FVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGP  247 (314)
Q Consensus       171 ~~~~~~~GQ~v~l~~~~~~~--~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP  247 (314)
                         .+.||||+.+.++.++.  ...|+||+++.++ .+.++|+||++         ++|.+|+||+ +|++||+|.++||
T Consensus        36 ---~~~pGQ~v~l~~~~~~~~~~~~r~~s~ss~~~-~~~~~i~vk~~---------~~G~~S~~l~~~l~~Gd~v~v~gP  102 (107)
T d1gvha2          36 ---EYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD-GKGYRIAVKRE---------EGGQVSNWLHNHANVGDVVKLVAP  102 (107)
T ss_dssp             ---CCCTTCEEEEEECCTTCSSCEEEEEECCSCCC-SSCEEEEEECC---------TTCHHHHHHHHTCCTTCEEEEEEE
T ss_pred             ---CCCCCCEEEEEeeccccCceEEeeccccCCCC-CCceEEEEEEc---------CCcchhHHHHhcCCCCCEEEEeCc
Confidence               78999999999986553  3568999887765 47899999987         8899999995 7999999999999


Q ss_pred             ccCc
Q psy5567         248 RGRL  251 (314)
Q Consensus       248 ~G~~  251 (314)
                      .|.|
T Consensus       103 ~G~F  106 (107)
T d1gvha2         103 AGDF  106 (107)
T ss_dssp             ECSC
T ss_pred             cccC
Confidence            9953

>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.74  E-value=1.1e-17  Score=131.98  Aligned_cols=94  Identities=16%  Similarity=0.233  Sum_probs=83.5

Q ss_pred             eEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccccc
Q psy5567          93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAW  172 (314)
Q Consensus        93 ~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (314)
                      +...+|++++.++++++.|+|+.++..                                                     
T Consensus         3 ~~~~kV~~v~~~t~~~~~~~l~~~~~~-----------------------------------------------------   29 (99)
T d1a8pa1           3 LNVERVLSVHHWNDTLFSFKTTRNPSL-----------------------------------------------------   29 (99)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEECCTTC-----------------------------------------------------
T ss_pred             cceEEEEEEEecCCCEEEEEecCCCCC-----------------------------------------------------
Confidence            455689999999999999999877542                                                     


Q ss_pred             CCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEE-ccccC
Q psy5567         173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVS-GPRGR  250 (314)
Q Consensus       173 ~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~-GP~G~  250 (314)
                       .++||||+.|.++..++.+.|+||++|+|.+ +.++++||++         ++|.+|+||++|++||+|.+. ||+|.
T Consensus        30 -~f~aGQ~~~l~~~~~g~~~~R~ySi~S~p~~-~~~~~~i~~~---------~~G~~S~~L~~l~~Gd~v~v~~gP~G~   97 (99)
T d1a8pa1          30 -RFENGQFVMIGLEVDGRPLMRAYSIASPNYE-EHLEFFSIKV---------QNGPLTSRLQHLKEGDELMVSRKPTGT   97 (99)
T ss_dssp             -CCCTTCEEEEEEEETTEEEEEEEECCSCTTS-SEEEEEEECC---------SSCSSHHHHTTCCTTCEEEEESCCBCS
T ss_pred             -ccCCCcEEEEeccCCCceeEeeccccCCCCC-CcEEEEEEEe---------CCCChhHHHHhCCCCCEEEECCCCcee
Confidence             6899999999999888888999999998875 6899999987         789999999999999999995 99995

>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=99.74  E-value=8.3e-18  Score=131.74  Aligned_cols=95  Identities=21%  Similarity=0.349  Sum_probs=83.4

Q ss_pred             eEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccccc
Q psy5567          93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAW  172 (314)
Q Consensus        93 ~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (314)
                      .++++|++++.++++++.|+|+++++....                                                  
T Consensus         3 ~~~~~v~~v~~lt~~v~~~~l~~~~~~~~~--------------------------------------------------   32 (100)
T d1krha1           3 HFEGTLARVENLSDSTITFDIQLDDGQPDI--------------------------------------------------   32 (100)
T ss_dssp             EEEEEEEEEEESSSSEEEEEEEECTTCCCC--------------------------------------------------
T ss_pred             EEEEEEEEEEEcCCCeEEEEEEcCCCCcCC--------------------------------------------------
Confidence            568999999999999999999999764332                                                  


Q ss_pred             CCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccccC
Q psy5567         173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGR  250 (314)
Q Consensus       173 ~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~  250 (314)
                       .|.||||+.|.++  +....|+||+++.+.+ +.+++.||++         ++|.+|+||+ +|++||+|.++||+|+
T Consensus        33 -~f~pGQ~v~l~i~--g~~~~r~ys~~~~~~~-~~~~~~i~~~---------~~G~~s~~l~~~l~~Gd~v~v~gP~G~   98 (100)
T d1krha1          33 -HFLAGQYVNVTLP--GTTETRSYSFSSQPGN-RLTGFVVRNV---------PQGKMSEYLSVQAKAGDKMSFTGPFGS   98 (100)
T ss_dssp             -CCCTTCEEEEECT--TSSCEEEEECCSCTTC-SEEEEEEECC---------TTCHHHHHHHTTCCTTCEEEEEEEECS
T ss_pred             -CCCCCEEEEEEEC--CcceeEEeeccCCCcc-CceEEEEEEe---------eCCchhhhhhccCCCCCEEEEeccccc
Confidence             7899999999984  5567899999998765 7899999987         7899999994 6999999999999995

>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=99.71  E-value=4.1e-17  Score=129.61  Aligned_cols=95  Identities=22%  Similarity=0.290  Sum_probs=82.9

Q ss_pred             CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567          91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF  170 (314)
Q Consensus        91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      +.|.+++|++++.+++|++.|+|+.++.....                                                
T Consensus         6 ~~~~~~~V~~~~~~t~di~~~~l~~~~g~~lp------------------------------------------------   37 (103)
T d2piaa1           6 DGFLRLKIASKEKIARDIWSFELTDPQGAPLP------------------------------------------------   37 (103)
T ss_dssp             TTCEEEEEEEEEEEETTEEEEEEECTTCCCCC------------------------------------------------
T ss_pred             CCeEEEEEEEEEEcCCCeEEEEEECCCCCcCC------------------------------------------------
Confidence            46899999999999999999999998764322                                                


Q ss_pred             ccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCCh-hchHhh-cCCCCCeEEEEccc
Q psy5567         171 AWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-MSQFLE-NMKVGEPINVSGPR  248 (314)
Q Consensus       171 ~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~-~S~~L~-~l~~Gd~v~v~GP~  248 (314)
                         .|.||||+.|.++.   ...|+||++|.+.+.++++|+||++         ++|. +|+||+ +|++||.|.++||.
T Consensus        38 ---~f~pGQ~v~v~~~~---~~~R~YSl~s~p~~~~~~~i~Vk~~---------~~g~~~S~~l~~~l~~Gd~v~v~~Pr  102 (103)
T d2piaa1          38 ---PFEAGANLTVAVPN---GSRRTYSLCNDSQERNRYVIAVKRD---------SNGRGGSISFIDDTSEGDAVEVSLPR  102 (103)
T ss_dssp             ---CCCTTCEEEEECTT---SCEEEEECCSCTTCCSEEEEEEECC---------TTSCSHHHHHHHSCCTTCEEEECCCB
T ss_pred             ---CCCCCceEEEEEec---ceeEEEEEecCCCCCCEEEEEEEEE---------CCCccchHHHHhcCCCCCEEEEeCCc
Confidence               68999999999853   3579999999998889999999987         7777 599995 89999999999996

>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.71  E-value=8.7e-18  Score=134.14  Aligned_cols=100  Identities=21%  Similarity=0.361  Sum_probs=86.1

Q ss_pred             CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567          91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF  170 (314)
Q Consensus        91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
                      ...++++|++++.+++|++.|+|++|+.....                                                
T Consensus         8 ~~~~~a~V~~~~~lt~di~~l~l~~p~~~~~~------------------------------------------------   39 (109)
T d1tvca1           8 VGSFEAEVVGLNWVSSNTVQFLLQKRPDECGN------------------------------------------------   39 (109)
T ss_dssp             SSEEEEEBCCCEEEETTEEEEEECSSTTSSSS------------------------------------------------
T ss_pred             ceeEEEEEEEEEEeCCCeEEEEEECCCccccc------------------------------------------------
Confidence            35778999999999999999999998754221                                                


Q ss_pred             ccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHh-hcCCCCCeEEEEcccc
Q psy5567         171 AWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRG  249 (314)
Q Consensus       171 ~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L-~~l~~Gd~v~v~GP~G  249 (314)
                      ..+.|.||||+.|.++  +....|+||++|.+.+.+.++|+||++         ++|.+|+|| +++++||.|.++||+|
T Consensus        40 ~~~~f~pGQ~v~l~~~--g~~~~R~ySias~p~~~~~~~~~i~~~---------~~G~~S~~l~~~l~~Gd~v~i~gP~G  108 (109)
T d1tvca1          40 RGVKFEPGQFMDLTIP--GTDVSRSYSPANLPNPEGRLEFLIRVL---------PEGRFSDYLRNDARVGQVLSVKGPLG  108 (109)
T ss_dssp             SCCSCCSCCEEEECTT--SCSSSEEECCBCCSSSSCCEEEEECCC---------TTSSSHHHHHHHSSSSSEEEEEEEEC
T ss_pred             ccccCCCCcEEEEEEC--CccccccceeccCCcCCceeEEEEEEe---------CCchHHHHHHhhCCCCCEEEEeCCcc
Confidence            0117899999999874  556789999999999889999999987         889999999 5799999999999998

>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=99.70  E-value=3e-17  Score=128.71  Aligned_cols=97  Identities=14%  Similarity=0.169  Sum_probs=86.0

Q ss_pred             ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccc
Q psy5567          92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFA  171 (314)
Q Consensus        92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (314)
                      ....++|++++++++++++|+|+.+....                                                   
T Consensus         3 ~~~~~~V~~~~~~~~~i~~l~l~~~~~~~---------------------------------------------------   31 (101)
T d1ep3b1           3 LQEMMTVVSQREVAYNIFEMVLKGTLVDE---------------------------------------------------   31 (101)
T ss_dssp             SEEEEEEEEEEEEETTEEEEEEESGGGGG---------------------------------------------------
T ss_pred             cCeeEEEEEEEEecCCEEEEEEECCChhh---------------------------------------------------
Confidence            35679999999999999999999764321                                                   


Q ss_pred             cCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccC
Q psy5567         172 WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR  250 (314)
Q Consensus       172 ~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~  250 (314)
                        .++||||++|.++.++....|+||+++.+.+.+.++|.+|..         ++|.+|.+|+++++||.|.+.||+|+
T Consensus        32 --~~~pGQfv~l~~~~~~~~~~R~~Si~~~~~~~~~i~~~i~~~---------~~g~~t~~l~~l~~Gd~v~v~GP~G~   99 (101)
T d1ep3b1          32 --MDLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIG---------DETTGTYKLSKLESGAKVDVMGPLGN   99 (101)
T ss_dssp             --CCSTTCEEEECCSCTTCCSCEEEECCEEETTTTEEEEEEECC---------CTTSHHHHHHTCCTTCEEEEEEEESB
T ss_pred             --ccCCCceEEEEccCCccEeeccceeeeCCCCCcEEEEEEeec---------CcchhhHHHHhCCCCCEEEEecccCC
Confidence              568999999999877777789999999988899999999976         77899999999999999999999995

>d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=3.1e-17  Score=128.42  Aligned_cols=92  Identities=15%  Similarity=0.225  Sum_probs=76.9

Q ss_pred             eEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccccc
Q psy5567          93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAW  172 (314)
Q Consensus        93 ~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (314)
                      ..+++|.+++.++++++.|+|+.++.   .                                                  
T Consensus         2 tl~~~V~~i~~lt~~v~~~~l~~~~~---~--------------------------------------------------   28 (97)
T d1qfja1           2 TLSCKVTSVEAITDTVYRVRIVPDAA---F--------------------------------------------------   28 (97)
T ss_dssp             EEEEEEEEEEESSSSCEEEEEEESSC---C--------------------------------------------------
T ss_pred             cEEEEEEEEEEcCCCEEEEEEeCCcc---C--------------------------------------------------
Confidence            56899999999999999999998653   1                                                  


Q ss_pred             CCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHh-hcCCCCCeEEEEccccC
Q psy5567         173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGR  250 (314)
Q Consensus       173 ~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L-~~l~~Gd~v~v~GP~G~  250 (314)
                       .+.||||+.|.++.   ...|+||++|.|.+++.++|.||..         ++|.+|+|| +++++||.|.++||+|.
T Consensus        29 -~f~~GQ~v~l~~~~---~~~r~ySias~p~~~~~l~l~ir~~---------~~g~~s~~l~~~l~~G~~v~v~gP~G~   94 (97)
T d1qfja1          29 -SFRAGQYLMVVMDE---RDKRPFSMASTPDEKGFIELHIGAS---------EINLYAKAVMDRILKDHQIVVDIPHGE   94 (97)
T ss_dssp             -CCCTTCEEEEESSS---SCEEEEECCSCTTSTTCEEEEEC---------------CCHHHHHHHHHHSEEEEEEEECS
T ss_pred             -ccCCCCEEEEEEcC---CCcEEEEEEEcCCCCcEEEEEEeEc---------cCCchhHhHhhcCCCCCEEEEeccCCc
Confidence             67899999999853   3479999999998889999999987         789999999 67999999999999995

>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.57  E-value=7.5e-15  Score=122.12  Aligned_cols=111  Identities=20%  Similarity=0.226  Sum_probs=87.1

Q ss_pred             cccCCCceEEEEEEEEEEeCC-----CEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeecc
Q psy5567          86 TLVDPDVKVPLKLKEKIEINH-----DTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVS  160 (314)
Q Consensus        86 ~~l~p~~~~~~~l~~~~~ls~-----~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (314)
                      ...+|...++++|++++.++.     +++.|.|+++..   +                                      
T Consensus        12 ~~y~p~~P~~a~V~~~~~lt~~~~~~~t~~i~~~~~~~---~--------------------------------------   50 (136)
T d1fnda1          12 NKFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE---I--------------------------------------   50 (136)
T ss_dssp             CSBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC---C--------------------------------------
T ss_pred             eeecCCCCeEEEEEeEEEccCCCCCceEEEEecccCCC---C--------------------------------------
Confidence            345567778999999999974     688888887543   2                                      


Q ss_pred             CCCCCCCcccccCCCCCCcEEEEEeeeCC----ceeeeeeeeecCCCC----CceEEEEEEEEeecCCCCCCCCChhchH
Q psy5567         161 APESEPPFHFAWLGLPIGQHLSLSATIND----EFVARAYTPVTSDEH----HGYMDLVVKVYFKNVHPKFPDGGKMSQF  232 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~~~GQ~v~l~~~~~~----~~~~R~YTp~s~~~~----~g~l~l~VK~~~~~~~~~~~~~G~~S~~  232 (314)
                                   .|.||||+.|.++..+    ....|.||++|++.+    .+.++|+||++.........++|.+|+|
T Consensus        51 -------------~y~pGQ~v~v~~p~~~~~~~~~~~R~YSIaSsP~~~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~  117 (136)
T d1fnda1          51 -------------PYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNF  117 (136)
T ss_dssp             -------------CCCTTCEEEEECSSBCTTSSBCCCEEEECCSCTTCTTSSSCEEEEEEECCEEECTTSCEEECHHHHH
T ss_pred             -------------cccCCCEEEEECCCcccccccceeEEeecccCCcCCCCCCcEEEEEEEEeecccCCCcCCCceEehh
Confidence                         7899999999986432    246799999998863    4679999998643333333357999999


Q ss_pred             hhcCCCCCeEEEEccccC
Q psy5567         233 LENMKVGEPINVSGPRGR  250 (314)
Q Consensus       233 L~~l~~Gd~v~v~GP~G~  250 (314)
                      |++|++||+|.++||+|+
T Consensus       118 L~dLk~GD~V~v~GP~Gk  135 (136)
T d1fnda1         118 LCDLKPGAEVKLTGPVGK  135 (136)
T ss_dssp             HHTCCTTCEEEEEEEECS
T ss_pred             hccCCCcCEEEEeCCCCC
Confidence            999999999999999995

>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=99.57  E-value=1.1e-14  Score=120.03  Aligned_cols=111  Identities=18%  Similarity=0.248  Sum_probs=87.3

Q ss_pred             ccCCCceEEEEEEEEEEeCC-----CEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccC
Q psy5567          87 LVDPDVKVPLKLKEKIEINH-----DTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSA  161 (314)
Q Consensus        87 ~l~p~~~~~~~l~~~~~ls~-----~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (314)
                      +.++....+++|++++.+++     +++.|+|+++...  +                                       
T Consensus         6 ~~~~~~P~~a~V~~~~~lt~~~~~~~v~~i~~~~~~~~--~---------------------------------------   44 (133)
T d2bmwa1           6 LYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGN--L---------------------------------------   44 (133)
T ss_dssp             SBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSC--C---------------------------------------
T ss_pred             ccCCCCCeEEEEEEEEEccCCCCCceEEEEEEccCCcc--C---------------------------------------
Confidence            45677778999999999975     4999999876432  2                                       


Q ss_pred             CCCCCCcccccCCCCCCcEEEEEeeeCC----ceeeeeeeeecCCCC----CceEEEEEEEEeecC-CCCCCCCChhchH
Q psy5567         162 PESEPPFHFAWLGLPIGQHLSLSATIND----EFVARAYTPVTSDEH----HGYMDLVVKVYFKNV-HPKFPDGGKMSQF  232 (314)
Q Consensus       162 ~~~~~~~~~~~~~~~~GQ~v~l~~~~~~----~~~~R~YTp~s~~~~----~g~l~l~VK~~~~~~-~~~~~~~G~~S~~  232 (314)
                                  .|.||||+.+..+.++    ....|.||++|.+.+    ...++++||+..... ..+..++|.+|+|
T Consensus        45 ------------~y~pGQ~v~v~~p~~~~~~~~~~~R~YSias~p~~~~~~~~~~~~~Vk~~~~~~~~~~~~~~G~~S~y  112 (133)
T d2bmwa1          45 ------------KYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTY  112 (133)
T ss_dssp             ------------CCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHH
T ss_pred             ------------CccCCCEEEEEeccccccccccceeeeeecCCCcCCCCCccEEEEEEEeccccccccCCCCCcEehhh
Confidence                        7899999999987532    346799999998764    357999999764332 1123357999999


Q ss_pred             hhcCCCCCeEEEEccccC
Q psy5567         233 LENMKVGEPINVSGPRGR  250 (314)
Q Consensus       233 L~~l~~Gd~v~v~GP~G~  250 (314)
                      |++|++||+|.++||+|+
T Consensus       113 L~~lk~GD~v~v~GP~G~  130 (133)
T d2bmwa1         113 LTHIEPGSEVKITGPVGK  130 (133)
T ss_dssp             HHTCCTTCEEEEEEEECS
T ss_pred             HhhCCCCCEEEEeCCccc
Confidence            999999999999999996

>d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=99.22  E-value=6.1e-11  Score=100.48  Aligned_cols=115  Identities=17%  Similarity=0.156  Sum_probs=88.4

Q ss_pred             ccccccccCCCceEEEEEEEEEEeCC-----CEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceee
Q psy5567          81 KKELKTLVDPDVKVPLKLKEKIEINH-----DTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWC  155 (314)
Q Consensus        81 ~~~~~~~l~p~~~~~~~l~~~~~ls~-----~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (314)
                      .+++....++...+.++|++++.|+.     +++.+.|.++..   .                                 
T Consensus        16 ~e~p~~~y~~~nP~~a~v~~n~~Lt~~~s~k~t~hie~dl~~~---~---------------------------------   59 (157)
T d1jb9a1          16 KEPPLNTYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGGN---V---------------------------------   59 (157)
T ss_dssp             SSCCCCSBBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTTS---S---------------------------------
T ss_pred             cCCCcccCCCCCCeEEEEEeEEEcccCCCCceEEEEEecCCCC---c---------------------------------
Confidence            44455667888888999999999985     788899988542   2                                 


Q ss_pred             eeeccCCCCCCCcccccCCCCCCcEEEEEeeeCC------ceeeeeeeeecCCCC----CceEEEEEEEEeecC-----C
Q psy5567         156 SRVVSAPESEPPFHFAWLGLPIGQHLSLSATIND------EFVARAYTPVTSDEH----HGYMDLVVKVYFKNV-----H  220 (314)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~~------~~~~R~YTp~s~~~~----~g~l~l~VK~~~~~~-----~  220 (314)
                                        .|.+||++.+..+..+      ....|.||++|++..    ...+.++||......     +
T Consensus        60 ------------------~y~~Gq~lgI~p~~~~~~~~~~p~~~R~YSIaSSp~~~~~~~~~~~~~V~~v~~~~~~~~~~  121 (157)
T d1jb9a1          60 ------------------PYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKE  121 (157)
T ss_dssp             ------------------CCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCBCTTTCCB
T ss_pred             ------------------cEecCceEEEEcCCccccccCccCCcCEEEecCCCcCCCCCCCEEEEEEEEeeccccccccC
Confidence                              7899999999886432      245799999999864    346889998642111     1


Q ss_pred             CCCCCCChhchHhhcCCCCCeEEEEccccC
Q psy5567         221 PKFPDGGKMSQFLENMKVGEPINVSGPRGR  250 (314)
Q Consensus       221 ~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~  250 (314)
                      .+. ..|.+|.||++|++||.|.+.||.|+
T Consensus       122 ~r~-~~GvcS~yL~~lk~Gd~V~i~gp~g~  150 (157)
T d1jb9a1         122 DPS-KNGVCSNFLCNSKPGDKIQLTGPSGK  150 (157)
T ss_dssp             CGG-GSCHHHHHHHTCCTTCEEEEEEEECS
T ss_pred             Ccc-cCceeehhhccCCCcCEEEEEecCCC
Confidence            111 46999999999999999999999997

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=8.4e-12  Score=102.64  Aligned_cols=57  Identities=58%  Similarity=0.886  Sum_probs=47.7

Q ss_pred             cceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         257 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       257 g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      |.|.|++ +.+.++.....++++|||||||||||++|++++++++.+.++++|+|++|
T Consensus         1 G~f~~~p-~~~~~~~~~~~k~i~lIagGtGItP~~s~l~~~l~~~~~~~~i~L~~~~r   57 (147)
T d1umka2           1 GKFAIRP-DKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ   57 (147)
T ss_dssp             TEEEECS-STTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCTTCCCEEEEEEEES
T ss_pred             CeeEecC-CCCCCcccccCCeEEEEECCeecchHHHHHHHHHhcCCCCceEEEEEEeC
Confidence            3567766 45555555678999999999999999999999998876788999999997

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Nitrate reductase
species: Corn (Zea mays) [TaxId: 4577]

Probab=99.01  E-value=1.3e-10  Score=93.61  Aligned_cols=51  Identities=41%  Similarity=0.802  Sum_probs=41.6

Q ss_pred             cceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCC-CCCccEEEEEEeC
Q psy5567         257 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP-TDNTKMSLIFANQ  314 (314)
Q Consensus       257 g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~-~~~~~v~Li~~~r  314 (314)
                      |.|.|++       +....++++|||||||||||++|++++++.+ .+.++++|+|++|
T Consensus         1 G~f~l~~-------~~~~~k~lv~IAgGtGIaP~~s~l~~~~~~~~~~~~~v~l~~g~r   52 (146)
T d2cnda2           1 GSFVING-------KQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANR   52 (146)
T ss_dssp             SCEEETT-------EEECCSEEEEEEEGGGHHHHHHHHHHHHHTTTTCCCEEEEEEEES
T ss_pred             CeEEeCC-------CCCCCCEEEEEeceEEHhHHHHHHHHHHHhCCccCceEEEEEeec
Confidence            4688864       1134689999999999999999999998764 4467999999997

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=98.85  E-value=8.8e-10  Score=86.69  Aligned_cols=39  Identities=28%  Similarity=0.624  Sum_probs=34.7

Q ss_pred             CCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567         274 KVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ  314 (314)
Q Consensus       274 ~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r  314 (314)
                      ..++++|||||||||||++|++++.+++  ..+++|+|++|
T Consensus         7 ~~~~~v~IagGtGiaP~~s~~~~l~~~~--~~~~~l~~~~r   45 (120)
T d2piaa2           7 RAKSFILVAGGIGITPMLSMARQLRAEG--LRSFRLYYLTR   45 (120)
T ss_dssp             TCSEEEEEEEGGGHHHHHHHHHHHHHHC--SSEEEEEEEES
T ss_pred             CCCCEEEEEecccHHHHHHHHHHHHHhc--CCCeEEEEeeC
Confidence            4689999999999999999999998775  35899999986

>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Nitrate reductase core domain
species: Corn (Zea mays) [TaxId: 4577]

Probab=98.41  E-value=2.3e-07  Score=72.62  Aligned_cols=49  Identities=41%  Similarity=0.577  Sum_probs=44.9

Q ss_pred             ccCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeecccee
Q psy5567           2 WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILV   50 (314)
Q Consensus         2 ~lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll   50 (314)
                      .+++++|||+.++...+|+.+.|+|||+|.+.+.|+++|+||.|+....
T Consensus        30 ~~~~~~Gq~v~v~~~~~~~~~~R~Ys~~s~~~~~~~~~~~ik~~~~~~~   78 (114)
T d2cnda1          30 VLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLVKVYFKNEH   78 (114)
T ss_dssp             CCCCCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECCCSSCB
T ss_pred             ccCccceEEEEEEeecccceEEeeeccCCCCCCCCEEEEEEEeccCCCc
Confidence            4678999999999999999999999999999999999999999987554

>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.2e-06  Score=69.27  Aligned_cols=46  Identities=50%  Similarity=0.904  Sum_probs=42.3

Q ss_pred             ccCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeecc
Q psy5567           2 WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPS   47 (314)
Q Consensus         2 ~lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~   47 (314)
                      .+++++||||.++..++|+.+.|+|||+|.+.+.|+++|+||++..
T Consensus        40 ~~~~~~Gq~v~v~~~~~~~~~~R~Ys~~s~~~~~g~~~~~vk~~~~   85 (124)
T d1umka1          40 ILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFK   85 (124)
T ss_dssp             BCCCCTTCEEEEEEEETTEEEEEEECCSSCTTCCSEEEEEEECCCS
T ss_pred             ccccceeeEEEEEecccceeEEEeeccCCcccCCceEEEEEEeccc
Confidence            4578999999999999999999999999999999999999998643

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=98.12  E-value=8.8e-07  Score=71.52  Aligned_cols=30  Identities=27%  Similarity=0.555  Sum_probs=26.7

Q ss_pred             CCCCeEEEEEcCcCHHHHHHHHHHHhhCCC
Q psy5567         273 LKVTQLSMIAGGTGITPMLQLVRHITKDPT  302 (314)
Q Consensus       273 ~~~~~vvmIAgGtGItP~l~li~~l~~~~~  302 (314)
                      +..++++||||||||||+++|++++++++.
T Consensus         6 ~~~~p~vliagGtGItP~~s~l~~~~~~~~   35 (141)
T d1tvca2           6 RGMAPRYFVAGGTGLAPVVSMVRQMQEWTA   35 (141)
T ss_dssp             CSSSCEEEEEESSTTHHHHHHHHHHHHHTC
T ss_pred             CCCCcEEEEECchhHHHHHHHHHHHHHcCC
Confidence            356789999999999999999999988764

>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=5.3e-06  Score=63.70  Aligned_cols=48  Identities=29%  Similarity=0.404  Sum_probs=39.0

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccceee
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVG   51 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll~   51 (314)
                      +...+||||.++...+|+.+.|+||++|.+.+ +++++.||.++.|.++
T Consensus        28 ~~f~pGQ~v~l~~~~~g~~~~R~YSi~s~p~~-~~~~~~vk~~~~G~~S   75 (99)
T d1fdra1          28 LPFTAGQFTKLGLEIDGERVQRAYSYVNSPDN-PDLEFYLVTVPDGKLS   75 (99)
T ss_dssp             CCCCTTCEEEEEECC---CEEEEEECCSCTTC-SSEEEEEECCTTCSSH
T ss_pred             CCCCCCcEEEeccCCCCCcEEEEEccCCCCCC-ceeEEEEEEecCcHHH
Confidence            45678999999999999999999999997765 7899999999987643

>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.62  E-value=4e-05  Score=58.64  Aligned_cols=48  Identities=15%  Similarity=0.221  Sum_probs=41.4

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccceee
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVG   51 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll~   51 (314)
                      +...+|||+.++...+|+.+.|+||..|.+.+ ++++++||.+++|.++
T Consensus        29 ~~f~aGQ~~~l~~~~~g~~~~R~ySi~S~p~~-~~~~~~i~~~~~G~~S   76 (99)
T d1a8pa1          29 LRFENGQFVMIGLEVDGRPLMRAYSIASPNYE-EHLEFFSIKVQNGPLT   76 (99)
T ss_dssp             CCCCTTCEEEEEEEETTEEEEEEEECCSCTTS-SEEEEEEECCSSCSSH
T ss_pred             CccCCCcEEEEeccCCCceeEeeccccCCCCC-CcEEEEEEEeCCCChh
Confidence            45678999999999999999999999997665 6899999999988643

>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=97.07  E-value=0.00012  Score=56.56  Aligned_cols=46  Identities=22%  Similarity=0.450  Sum_probs=39.3

Q ss_pred             CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccceee
Q psy5567           4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVG   51 (314)
Q Consensus         4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll~   51 (314)
                      ...+|||+.++  +.|..+.|+||+.|.+.+.+.++|.||.+++|.++
T Consensus        43 ~f~pGQ~v~l~--~~g~~~~R~ySias~p~~~~~~~~~i~~~~~G~~S   88 (109)
T d1tvca1          43 KFEPGQFMDLT--IPGTDVSRSYSPANLPNPEGRLEFLIRVLPEGRFS   88 (109)
T ss_dssp             SCCSCCEEEEC--TTSCSSSEEECCBCCSSSSCCEEEEECCCTTSSSH
T ss_pred             cCCCCcEEEEE--ECCccccccceeccCCcCCceeEEEEEEeCCchHH
Confidence            34579998876  56777899999999999999999999999988754

>d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00043  Score=52.16  Aligned_cols=45  Identities=16%  Similarity=0.307  Sum_probs=31.9

Q ss_pred             CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccceee
Q psy5567           4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVG   51 (314)
Q Consensus         4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll~   51 (314)
                      ....|||+.++..  + ...|+||+.|.+++.++++|.||.+++|.++
T Consensus        29 ~f~~GQ~v~l~~~--~-~~~r~ySias~p~~~~~l~l~ir~~~~g~~s   73 (97)
T d1qfja1          29 SFRAGQYLMVVMD--E-RDKRPFSMASTPDEKGFIELHIGASEINLYA   73 (97)
T ss_dssp             CCCTTCEEEEESS--S-SCEEEEECCSCTTSTTCEEEEEC------CC
T ss_pred             ccCCCCEEEEEEc--C-CCcEEEEEEEcCCCCcEEEEEEeEccCCchh
Confidence            4567999999754  2 2459999999999999999999999988644

>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=96.65  E-value=0.0018  Score=49.45  Aligned_cols=44  Identities=16%  Similarity=0.119  Sum_probs=36.1

Q ss_pred             cCCcccceEEEEEEeC--CeeeEEeccCCCCCCCceeEEEEeeeecc
Q psy5567           3 LGLPIGQHLSLSATIN--DEFVARAYTPVTSDEHHGYMDLVVKSVPS   47 (314)
Q Consensus         3 lglpvg~hv~~~~~~~--g~~v~RpYTPvs~~~~~g~~~llIK~Y~~   47 (314)
                      ++..+||||.++...+  |..+.|+||+.|.+. .+.++|.||.+..
T Consensus        33 ~~~~~GQ~v~l~~~~~~~~~~~~R~ySi~s~p~-~~~~~~~v~~~~~   78 (111)
T d1cqxa2          33 VNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN-GRTYRISVKREGG   78 (111)
T ss_dssp             CCCCTTCEEEEEEEETTTTEEEEEEEECCSCCC-SSCEEEEEECCCB
T ss_pred             cCCCCCCEEEEEeecCCCcceeeeeccccCCcc-CCCeEEEEEEecC
Confidence            5678999999999875  567899999988665 4679999998654

>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=96.33  E-value=0.0011  Score=50.66  Aligned_cols=44  Identities=14%  Similarity=0.157  Sum_probs=36.8

Q ss_pred             CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeecccee
Q psy5567           4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILV   50 (314)
Q Consensus         4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll   50 (314)
                      ...+||||.++..  + ...|+||..|.+.+.++++|.||.+++|.+
T Consensus        38 ~f~pGQ~v~v~~~--~-~~~R~YSl~s~p~~~~~~~i~Vk~~~~g~~   81 (103)
T d2piaa1          38 PFEAGANLTVAVP--N-GSRRTYSLCNDSQERNRYVIAVKRDSNGRG   81 (103)
T ss_dssp             CCCTTCEEEEECT--T-SCEEEEECCSCTTCCSEEEEEEECCTTSCS
T ss_pred             CCCCCceEEEEEe--c-ceeEEEEEecCCCCCCEEEEEEEEECCCcc
Confidence            3468999998863  2 356999999998889999999999998874

>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0016  Score=49.42  Aligned_cols=46  Identities=15%  Similarity=-0.017  Sum_probs=35.7

Q ss_pred             cCCcccceEEEEEEeCCee--eEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           3 LGLPIGQHLSLSATINDEF--VARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~--v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      ....+||||.+++..+|..  ..|+|+..+ ..+.+.++|.||.+++|.
T Consensus        35 ~~~~pGQ~v~l~~~~~~~~~~~~r~~s~ss-~~~~~~~~i~vk~~~~G~   82 (107)
T d1gvha2          35 AEYRPGQYLGVWLKPEGFPHQEIRQYSLTR-KPDGKGYRIAVKREEGGQ   82 (107)
T ss_dssp             CCCCTTCEEEEEECCTTCSSCEEEEEECCS-CCCSSCEEEEEECCTTCH
T ss_pred             cCCCCCCEEEEEeeccccCceEEeeccccC-CCCCCceEEEEEEcCCcc
Confidence            3567899999999988753  456666544 556788999999999875

>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=95.93  E-value=0.0011  Score=49.86  Aligned_cols=45  Identities=13%  Similarity=0.067  Sum_probs=39.7

Q ss_pred             CcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           5 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         5 lpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      ..+||+|.++...+++.+.|||+..+.+.+++.++|+||..+.|.
T Consensus        33 ~~pGQfv~l~~~~~~~~~~R~~Si~~~~~~~~~i~~~i~~~~~g~   77 (101)
T d1ep3b1          33 DLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIGDETT   77 (101)
T ss_dssp             CSTTCEEEECCSCTTCCSCEEEECCEEETTTTEEEEEEECCCTTS
T ss_pred             cCCCceEEEEccCCccEeeccceeeeCCCCCcEEEEEEeecCcch
Confidence            467999999998888888899999998889999999999887543

>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=95.20  E-value=0.0076  Score=44.86  Aligned_cols=44  Identities=18%  Similarity=0.297  Sum_probs=35.0

Q ss_pred             cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567           3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL   49 (314)
Q Consensus         3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl   49 (314)
                      +...+||||.++  ++|....|+||..+.+. .+.+++.||.++.|.
T Consensus        32 ~~f~pGQ~v~l~--i~g~~~~r~ys~~~~~~-~~~~~~~i~~~~~G~   75 (100)
T d1krha1          32 IHFLAGQYVNVT--LPGTTETRSYSFSSQPG-NRLTGFVVRNVPQGK   75 (100)
T ss_dssp             CCCCTTCEEEEE--CTTSSCEEEEECCSCTT-CSEEEEEEECCTTCH
T ss_pred             CCCCCCEEEEEE--ECCcceeEEeeccCCCc-cCceEEEEEEeeCCc
Confidence            345799999886  46777889999888655 478999999998765

>d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.08  E-value=0.0061  Score=54.03  Aligned_cols=54  Identities=15%  Similarity=0.192  Sum_probs=40.1

Q ss_pred             eeeeeeeeecCCC-CCceEEEEEEEEeecCCC--CCCCCChhchHhhcCCCCCeEEE
Q psy5567         191 FVARAYTPVTSDE-HHGYMDLVVKVYFKNVHP--KFPDGGKMSQFLENMKVGEPINV  244 (314)
Q Consensus       191 ~~~R~YTp~s~~~-~~g~l~l~VK~~~~~~~~--~~~~~G~~S~~L~~l~~Gd~v~v  244 (314)
                      ...|.||++|++. ..+.++|+|.++......  .....|..|.||++|++||.|.+
T Consensus       208 L~PR~YSIsSSp~~~p~~v~Ltv~vV~y~~~~~~g~~r~GvcS~~L~~l~~Gd~v~v  264 (270)
T d1f20a1         208 LQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPC  264 (270)
T ss_dssp             CCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTCEEEE
T ss_pred             cccceeEEecCccCCCCEEEEEEEEEEEeccCCCCCeeeeechHHHhcCCCCCEEEE
Confidence            4679999999986 468899999865322211  11235999999999999998765

>d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

Probab=94.08  E-value=0.02  Score=48.80  Aligned_cols=54  Identities=20%  Similarity=0.245  Sum_probs=39.9

Q ss_pred             eeeeeeeeecCCC-CCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEE
Q psy5567         191 FVARAYTPVTSDE-HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVS  245 (314)
Q Consensus       191 ~~~R~YTp~s~~~-~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~  245 (314)
                      ...|.||++|++. ..+.++|+|.++.-+.+. ....|-.|+||. .+++||.|.+.
T Consensus       158 l~PR~YSIsSSp~~~p~~i~ltv~vv~~~~~~-~~r~GvcS~~L~~~l~~g~~V~v~  213 (221)
T d1ddga1         158 LTPRLYSIASSQAEVENEVHVTVGVVRYDVEG-RARAGGASSFLADRVEEEGEVRVF  213 (221)
T ss_dssp             CCCEEEEBCCCTTTSCSEEEEEEEECEEEETT-EEEECHHHHHHHHSCCSSCEEEEE
T ss_pred             cCceeeeeccccccCCCeeeEEEEEEEeeCCC-CccceecHHHHHhhCCCCCEEEEE
Confidence            4569999999986 467899999875322221 124599999996 69999998764

>d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.15  E-value=0.062  Score=47.51  Aligned_cols=50  Identities=14%  Similarity=0.166  Sum_probs=37.8

Q ss_pred             eeeeeeeeecCCC-CCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCC
Q psy5567         191 FVARAYTPVTSDE-HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGE  240 (314)
Q Consensus       191 ~~~R~YTp~s~~~-~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd  240 (314)
                      ...|.||++|++. ..+.++|+|.++....+......|-.|.||.++.+|+
T Consensus       212 L~PR~YSISSSp~~~p~~v~ltv~vV~y~~~~g~~r~GvcS~~L~~l~~~~  262 (279)
T d1ja1a1         212 LQARYYAIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAG  262 (279)
T ss_dssp             CCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSEEECHHHHHHHHCCCCS
T ss_pred             CCCceeeEecCcccCCCEEEEEEEEEEeecCCCCcccccchHHHhhcCCCC
Confidence            4679999999986 5689999998654333333334699999999888776