Psyllid ID: psy5575

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------67
MDKSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRILLLYDFSYFTLYAVVIMFHVEN
cHHHHHHHHHHHHccccccccccEEEcccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHcccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcEEEEcccccc
cccHHHHHHHHHHHHHccccccccEEccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHcHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcc
MDKSMAVLHEVLGMyhsgvfkdgqlvsnkstnkqdlktirgdqitwidgrETYCSNIGRLISEVDAIIMRANRMvnngrmgdfvingrtkdlristVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRILLLYDFSYFTLYAVVIMFHVEN
MDKSMAVLHEVLGMYHsgvfkdgqlvsnkstnkqdlktirgdqitwidgrETYCSNIGRLISEVDAIIMRANRMvnngrmgdfvingrtkdlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristvedlristveDLRILLLYDFSYFTLYAVVIMFHVEN
MDKSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRILLLYDFSYFTLYAVVIMFHVEN
******VLHEVLGMYHSGVFKDGQLV********DLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRILLLYDFSYFTLYAVVIMFHV**
***SMAVLHEVLGMYHSGVFKD******************GDQITWIDGRETYCSNIGRLISEVD****************DFVINGRTKDLRISTVEDL*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LLYDFSYFTLYAV*IMF****
MDKSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRILLLYDFSYFTLYAVVIMFHVEN
**KSMAVLHEVLGMYHSGVFKDGQLVSNK*******KTIRGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKDLRISTVEDLRISTV*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************DLRILLLYDFSYFTLYAVVIMFHVEN
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDKSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRILLLYDFSYFTLYAVVIMFHVEN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query668 2.2.26 [Sep-21-2011]
Q8IXT51001 RNA-binding protein 12B O yes N/A 0.526 0.351 0.342 2e-49
Q80YR9836 RNA-binding protein 12B-A yes N/A 0.317 0.253 0.323 2e-15
Q66JV4834 RNA-binding protein 12B-B yes N/A 0.312 0.250 0.317 3e-13
Q96KS0407 Egl nine homolog 2 OS=Hom no N/A 0.116 0.191 0.441 1e-12
Q91YE2419 Egl nine homolog 2 OS=Mus no N/A 0.116 0.186 0.441 1e-12
Q6AYU4415 Egl nine homolog 2 OS=Rat no N/A 0.116 0.187 0.441 1e-12
P59722222 Egl nine homolog 1 OS=Rat no N/A 0.112 0.337 0.457 2e-12
Q91YE3400 Egl nine homolog 1 OS=Mus no N/A 0.112 0.187 0.469 6e-12
Q9GZT9426 Egl nine homolog 1 OS=Hom no N/A 0.112 0.176 0.469 9e-12
D3YVF0745 A-kinase anchor protein 5 no N/A 0.419 0.375 0.133 3e-08
>sp|Q8IXT5|RB12B_HUMAN RNA-binding protein 12B OS=Homo sapiens GN=RBM12B PE=1 SV=2 Back     alignment and function desciption
 Score =  197 bits (502), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 140/368 (38%), Gaps = 16/368 (4%)

Query: 94  ISTVEDLRISTVEDLR-----ISTVEDLRIS---TVEDLRISTVEDLRISTVEDLRISTV 145
           +   E+ R   +EDLR          D R       ED R S+ ED R    ED R S  
Sbjct: 521 VGAFENFR-HQLEDLRQLDNFKHPQRDFRQPDRHPPEDFRHSS-EDFRFPP-EDFRHSP- 576

Query: 146 EDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLR 205
           ED R    ED R  + ED R    ED R    +D R    ED R    ED R    ED R
Sbjct: 577 EDFRRPREEDFRRPSEEDFRRPWEEDFRRPPEDDFRHPREEDWRRPLEEDWRRPLEEDFR 636

Query: 206 ISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTV 265
            S  ED R    ED R    EDLR    ED R    ED R    ED R     + R    
Sbjct: 637 RSPTEDFRQLPEEDFRQPPEEDLRWLPEEDFRRPPEEDWRRPPEEDFRRPLQGEWRRPPE 696

Query: 266 EDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLR 325
           +D R    ED R S  ED R S  E  R    E  R    E  R    E  R    E  R
Sbjct: 697 DDFRRPPEEDFRHSPEEDFRQSPQEHFRRPPQEHFRRPPPEHFRRPPPEHFRRPPPEHFR 756

Query: 326 ISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTV 385
               E  R    E  R    E  R    E  R    E  R S  ED R    ED R    
Sbjct: 757 RPPPEHFRRPPPEHFRRPPPEHFRRPPQEHFRRPPQEHFRRSREEDFRHPPDEDFRGPPD 816

Query: 386 EDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLR 445
           ED R    ED R    ED R  + ED R    EDLR +  ED R+   ++ R    ED R
Sbjct: 817 EDFRHPPDEDFRSPQEEDFRCPSDEDFRQLPEEDLREAPEEDPRLP--DNFR-PPGEDFR 873

Query: 446 ISTVEDLR 453
            S  +D R
Sbjct: 874 -SPPDDFR 880

Homo sapiens (taxid: 9606)
>sp|Q80YR9|R12BA_MOUSE RNA-binding protein 12B-A OS=Mus musculus GN=Rbm12b1 PE=1 SV=2 Back     alignment and function description
>sp|Q66JV4|R12BB_MOUSE RNA-binding protein 12B-B OS=Mus musculus GN=Rbm12b2 PE=1 SV=2 Back     alignment and function description
>sp|Q96KS0|EGLN2_HUMAN Egl nine homolog 2 OS=Homo sapiens GN=EGLN2 PE=1 SV=1 Back     alignment and function description
>sp|Q91YE2|EGLN2_MOUSE Egl nine homolog 2 OS=Mus musculus GN=Egln2 PE=2 SV=2 Back     alignment and function description
>sp|Q6AYU4|EGLN2_RAT Egl nine homolog 2 OS=Rattus norvegicus GN=Egln2 PE=2 SV=1 Back     alignment and function description
>sp|P59722|EGLN1_RAT Egl nine homolog 1 OS=Rattus norvegicus GN=Egln1 PE=2 SV=1 Back     alignment and function description
>sp|Q91YE3|EGLN1_MOUSE Egl nine homolog 1 OS=Mus musculus GN=Egln1 PE=2 SV=2 Back     alignment and function description
>sp|Q9GZT9|EGLN1_HUMAN Egl nine homolog 1 OS=Homo sapiens GN=EGLN1 PE=1 SV=1 Back     alignment and function description
>sp|D3YVF0|AKAP5_MOUSE A-kinase anchor protein 5 OS=Mus musculus GN=Akap5 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query668
268568782 994 Hypothetical protein CBG24130 [Caenorhab 0.836 0.562 0.464 1e-135
268535142570 Hypothetical protein CBG18729 [Caenorhab 0.803 0.942 0.495 1e-134
268529986632 Hypothetical protein CBG00520 [Caenorhab 0.835 0.882 0.473 1e-133
268562828535 Hypothetical protein CBG18438 [Caenorhab 0.784 0.979 0.473 1e-130
268575540 905 Hypothetical protein CBG21131 [Caenorhab 0.835 0.616 0.454 1e-128
268570605694 Hypothetical protein CBG24896 [Caenorhab 0.836 0.805 0.447 1e-126
268563254553 Hypothetical protein CBG19581 [Caenorhab 0.781 0.943 0.427 1e-121
268530276631 Hypothetical protein CBG00688 [Caenorhab 0.826 0.874 0.460 1e-120
268563765 784 Hypothetical protein CBG23793 [Caenorhab 0.844 0.719 0.438 1e-119
268554734619 Hypothetical protein CBG01525 [Caenorhab 0.854 0.922 0.417 1e-116
>gi|268568782|ref|XP_002648102.1| Hypothetical protein CBG24130 [Caenorhabditis briggsae] Back     alignment and taxonomy information
 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 261/562 (46%), Positives = 403/562 (71%), Gaps = 3/562 (0%)

Query: 89  TKDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDL 148
           +++LRIS  ++L+IS  ++LRI   ++LRIS  ++LR+S  ++LRIS  ++LRIS  ++L
Sbjct: 366 SQNLRISESQNLKISESQNLRIQESQNLRISESQNLRVSESQNLRISESQNLRISKSQNL 425

Query: 149 RISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRIST 208
           RIS  ++L+IS  ++LRIS  + LRIS  ++LRIS   +LRIS  ++LRIS  ++LRIS 
Sbjct: 426 RISESQNLKISKSQNLRISKSQSLRISESKNLRISEFHNLRISEFQNLRISESQNLRISE 485

Query: 209 VEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVE---DLRISTV 265
            ++LRIS  ++L+IS  ++ RIS  ++LRIS   +LRIS  ++LRIS  +   +LRIS  
Sbjct: 486 SQNLRISESQNLKISESQNFRISESQNLRISESRNLRISESQNLRISESQESQNLRISKS 545

Query: 266 EDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLR 325
           ++LRIS  ++LRIS  ++LRIS  ++LRIS  ++LRIS  ++LRIS  ++LRIS  ++LR
Sbjct: 546 QNLRISESQNLRISESQNLRISESQNLRISESQNLRISESQNLRISESQNLRISESQNLR 605

Query: 326 ISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTV 385
           IS  ++LRIS  ++LRIS   +LRIS  ++LRIS  ++LRIS  ++LRIS  ++LR+S  
Sbjct: 606 ISESQNLRISESKNLRISEFHNLRISEFQNLRISESQNLRISKSQNLRISESQNLRVSES 665

Query: 386 EDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLR 445
           ++LR+S  ++LRIS  ++LRIS  ++L IS  ++LRI   ++LRIS  ++LRIS  ++LR
Sbjct: 666 QNLRVSEFQNLRISESQNLRISKSQNLGISESQNLRILESQNLRISESQNLRISGSQNLR 725

Query: 446 ISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTV 505
           +S  ++LRIS  ++ RIS   +LRI   ++LRIS  ++LRIS  ++LRIS  ++LRIS  
Sbjct: 726 LSESQNLRISESQNFRISESLNLRIPESQNLRISESQNLRISKSQNLRISESQNLRISES 785

Query: 506 EDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLR 565
           + L+IS  ++LRIS  ++LRIS  ++LRIS  ++LRIS  ++LRIS  ++LRIS  ++LR
Sbjct: 786 QHLKISESQNLRISESQNLRISESQNLRISESQNLRISESQNLRISESQNLRISESQNLR 845

Query: 566 ISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTV 625
           I   ++LRIS  ++LRIS  ++LRI   ++LRIS  ++LRIS  ++LRIS  ++L+IS  
Sbjct: 846 ILESQNLRISESQNLRISESQNLRIQESQNLRISQSQNLRISESQNLRISESQNLKISES 905

Query: 626 EDLRISTVEDLRISTVEDLRIL 647
           ++LRIS  + LRIS  +  R L
Sbjct: 906 QNLRISKSQSLRISKSQKSRNL 927

Source: Caenorhabditis briggsae

Species: Caenorhabditis briggsae

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota
>gi|268535142|ref|XP_002632704.1| Hypothetical protein CBG18729 [Caenorhabditis briggsae] Back     alignment and taxonomy information
>gi|268529986|ref|XP_002630119.1| Hypothetical protein CBG00520 [Caenorhabditis briggsae] Back     alignment and taxonomy information
>gi|268562828|ref|XP_002646787.1| Hypothetical protein CBG18438 [Caenorhabditis briggsae] Back     alignment and taxonomy information
>gi|268575540|ref|XP_002642749.1| Hypothetical protein CBG21131 [Caenorhabditis briggsae] Back     alignment and taxonomy information
>gi|268570605|ref|XP_002648574.1| Hypothetical protein CBG24896 [Caenorhabditis briggsae] Back     alignment and taxonomy information
>gi|268563254|ref|XP_002646887.1| Hypothetical protein CBG19581 [Caenorhabditis briggsae] Back     alignment and taxonomy information
>gi|268530276|ref|XP_002630264.1| Hypothetical protein CBG00688 [Caenorhabditis briggsae] Back     alignment and taxonomy information
>gi|268563765|ref|XP_002647007.1| Hypothetical protein CBG23793 [Caenorhabditis briggsae] Back     alignment and taxonomy information
>gi|268554734|ref|XP_002635354.1| Hypothetical protein CBG01525 [Caenorhabditis briggsae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query668
GENEDB_PFALCIPARUM|PFB0915w 1558 PFB0915w "liver stage antigen 0.904 0.387 0.225 6.8e-35
UNIPROTKB|O96275 1558 PFB0915w "Liver stage antigen 0.904 0.387 0.225 6.8e-35
UNIPROTKB|Q8IXT51001 RBM12B "RNA-binding protein 12 0.486 0.324 0.355 8.8e-22
WB|WBGene0000643618 ttn-1 [Caenorhabditis elegans 0.832 30.88 0.124 1.2e-18
UNIPROTKB|F1RY40986 RBM12B "Uncharacterized protei 0.580 0.393 0.323 1.2e-17
UNIPROTKB|E2RRS5994 RBM12B "Uncharacterized protei 0.482 0.323 0.334 1.5e-17
UNIPROTKB|E1B7G5984 RBM12B "Uncharacterized protei 0.434 0.294 0.351 4.1e-17
RGD|620829714 Akap5 "A kinase (PRKA) anchor 0.896 0.838 0.156 6.3e-16
UNIPROTKB|P24587714 Akap5 "A-kinase anchor protein 0.896 0.838 0.156 6.3e-16
MGI|MGI:2685104745 Akap5 "A kinase (PRKA) anchor 0.600 0.538 0.150 1.4e-15
GENEDB_PFALCIPARUM|PFB0915w PFB0915w "liver stage antigen 3" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
 Score = 411 (149.7 bits), Expect = 6.8e-35, P = 6.8e-35
 Identities = 143/633 (22%), Positives = 325/633 (51%)

Query:     4 SMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISE 63
             S  V  ++L +   G      +  NK  N ++ + I+ + I   +  E   + I  L++ 
Sbjct:   102 SEEVKEKILDLLEEGNTLTESVDDNK--NLEEAEDIK-ENILLSNIEEPKENIIDNLLNN 158

Query:    64 VDAIIMRANRMVNNGRMGDFVINGRTKDLRISTVEDLRISTVEDLRIST-VEDLRISTVE 122
             +     +   +  N ++ D + N     + ++   +++ + +E+ +++  + +  + +V+
Sbjct:   159 IGQNSEKQESVSENVQVSDELFNELLNSVDVNG--EVKENILEESQVNDDIFNSLVKSVQ 216

Query:   123 DLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRI-STVEDLRISTVEDLR 181
               +   VE+    +VE+    +VE+     VE+  +   +D  + S+VE+   S+V++  
Sbjct:   217 QEQQHNVEEKVEESVEENDEESVEE----NVEE-NVEENDDESVASSVEESIASSVDESI 271

Query:   182 ISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTV 241
              S++E+    TVE++   TVE++   +V +    +VE+   S  E++  S  E++  S  
Sbjct:   272 DSSIEENVAPTVEEIVAPTVEEIVAPSVVESVAPSVEE---SVEENVEESVAENVEESVA 328

Query:   242 EDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLR 301
             E++  S  E++  S  E++  S  E++  S  E+     VE++   TVE+    TVE++ 
Sbjct:   329 ENVEESVAENVEESVAENVEESVAENVEESVAEN-----VEEIVAPTVEESVAPTVEEIV 383

Query:   302 ISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTV 361
               +VE+    +VE++ + TVE+     VE++   +VE++   +VE++   TVE+    TV
Sbjct:   384 APSVEESVAPSVEEIVVPTVEESVAENVEEIVAPSVEEIVAPSVEEIVAPTVEESVAPTV 443

Query:   362 EDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLR 421
             E++   +VE+    +VE++ + TVE+     VE+     VE++   +VE++   +VE++ 
Sbjct:   444 EEIVAPSVEESVAPSVEEIVVPTVEESVAENVEESVAENVEEIVAPSVEEIVAPSVEEIV 503

Query:   422 ISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTV 481
               +VE++   +VE++   +VE++   +VE++   +VE++   +VE++   TVE++   TV
Sbjct:   504 APSVEEIVAPSVEEIVAPSVEEIVAPSVEEIVAPSVEEIVAPSVEEIVAPTVEEIVAPTV 563

Query:   482 EDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLR 541
             E++   +VE++   TVE+   S  E++  +  ++L  + +  +    ++D  ++ +E+++
Sbjct:   564 EEIVAPSVEEIVAPTVEE---SVAENVATNLSDNLLSNLLGGIETEEIKDSILNEIEEVK 620

Query:   542 ISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTVEDLRISTV 601
              + V  + +  VE+    +V     + +E+++ +T+ +    T+E+      E++  + +
Sbjct:   621 ENVVTTI-LENVEETTAESVTTFS-NILEEIQENTITN---DTIEEKLEELHENVLSAAL 675

Query:   602 EDLRISTVEDLRISTVEDLRISTVEDLRISTVE 634
             E+ +    +   I  +E+++      L I TVE
Sbjct:   676 ENTQSEEEKKEVIDVIEEVKEEVATTL-IETVE 707
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|O96275 PFB0915w "Liver stage antigen 3" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IXT5 RBM12B "RNA-binding protein 12B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00006436 ttn-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1RY40 RBM12B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RRS5 RBM12B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1B7G5 RBM12B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|620829 Akap5 "A kinase (PRKA) anchor protein 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P24587 Akap5 "A-kinase anchor protein 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2685104 Akap5 "A kinase (PRKA) anchor protein 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 668
KOG3710|consensus280 99.9
>KOG3710|consensus Back     alignment and domain information 
Probab=99.90  E-value=4.3e-25  Score=220.01  Aligned_cols=90  Identities=40%  Similarity=0.722  Sum_probs=83.7

Q ss_pred             ChhhhHHHHHHHhhhcCCCCCCCeeecCCCCCCcCCCCccCceeEEecCCCCCchhHHHHHHHHHHHHHHhhccccCCcc
Q psy5575           1 MDKSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRM   80 (668)
Q Consensus         1 ~erG~~VL~EVk~LY~sG~FtDGQLVsqk~~s~~~~k~IRGDkItWvdG~EpgCe~I~~LIS~mD~LI~~cnrm~~NGkL   80 (668)
                      ++.|.+|++||++||+.|+|+|||||++++..   .|+||||+|+||+|+||||++|++||+.||.+|.||     ||++
T Consensus        64 ~~~g~~v~~ev~~l~~~G~f~dgql~~~~~~~---~k~iRgd~i~wi~G~e~gc~~i~~L~s~~d~~i~h~-----~~r~  135 (280)
T KOG3710|consen   64 SETGKFILKEVEALYETGAFRDGQLVSPDAFH---SKDIRGDKITWVGGNEPGCETIMLLPSPIDSVILHC-----NGRL  135 (280)
T ss_pred             HHHHHHHHHHHHHHHhccCccCceeccCcCCc---chhhccCCceEecCCCCCccceeeecccchhhhhhh-----cccc
Confidence            47899999999999999999999999987764   489999999999999999999999999999999999     6779


Q ss_pred             cceEEccccceeeeccccc
Q psy5575          81 GDFVINGRTKDLRISTVED   99 (668)
Q Consensus        81 G~y~InGRTKAMvise~~~   99 (668)
                      |.|.|+ ||||||+|+--|
T Consensus       136 ~~~~~g-RtkAMVAcYPGN  153 (280)
T KOG3710|consen  136 GSYIIG-RTKAMVACYPGN  153 (280)
T ss_pred             cccccc-ceeEEEEEecCC
Confidence            999885 999999999764

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query668
3oui_A213 Phd2-R717 With 40787422 Length = 213 2e-14
2hbt_A247 Crystal Structure Of Hif Prolyl Hydroxylase Egln-1 4e-13
2g1m_A246 Cellular Oxygen Sensing: Crystal Structure Of Hypox 4e-13
3hqr_A246 Phd2:mn:nog:hif1-Alpha Substrate Complex Length = 2 4e-13
2g19_A244 Cellular Oxygen Sensing: Crystal Structure Of Hypox 4e-13
2y33_A252 S-Nitrosylated Phd2 (Gsno Soaked) In Complex With Z 4e-13
3ouh_A237 Phd2-R127 With Jnj41536014 Length = 237 4e-13
>pdb|3OUI|A Chain A, Phd2-R717 With 40787422 Length = 213 Back     alignment and structure 
Iteration: 1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 8/83 (9%)
Query: 10  EVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIM 69
           EV  ++ +G F DGQLVS KS + +D   IRGD+ITWI+G+E  C  IG L+S +D +I 
Sbjct: 46  EVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCETIGLLMSSMDDLIR 102
Query: 70  RANRMVNNGRMGDFVINGRTKDL 92
                  NG++G + INGRTK +
Sbjct: 103 HC-----NGKLGSYKINGRTKAM 120
>pdb|2HBT|A Chain A, Crystal Structure Of Hif Prolyl Hydroxylase Egln-1 In Complex With A Biologically Active Inhibitor Length = 247 Back     alignment and structure
>pdb|2G1M|A Chain A, Cellular Oxygen Sensing: Crystal Structure Of Hypoxia- Inducible Factor Prolyl Hydroxylase (Phd2) Length = 246 Back     alignment and structure
>pdb|3HQR|A Chain A, Phd2:mn:nog:hif1-Alpha Substrate Complex Length = 246 Back     alignment and structure
>pdb|2G19|A Chain A, Cellular Oxygen Sensing: Crystal Structure Of Hypoxia- Inducible Factor Prolyl Hydroxylase (Phd2) Length = 244 Back     alignment and structure
>pdb|2Y33|A Chain A, S-Nitrosylated Phd2 (Gsno Soaked) In Complex With Zn(Ii) And Un9 Length = 252 Back     alignment and structure
>pdb|3OUH|A Chain A, Phd2-R127 With Jnj41536014 Length = 237 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query668
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Length = 247 Back     alignment and structure
 Score = 52.5 bits (125), Expect = 1e-07
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 8/89 (8%)

Query: 2   DKSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLI 61
           +    +  EV  ++ +G F DGQLVS KS + +D   IRGD+ITWI+G+E  C  IG L+
Sbjct: 38  ETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCETIGLLM 94

Query: 62  SEVDAIIMRANRMVNNGRMGDFVINGRTK 90
           S +D +I   N      ++G + INGRTK
Sbjct: 95  SSMDDLIRHCNG-----KLGSYKINGRTK 118
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query668
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 98.87
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
Probab=98.87  E-value=3.8e-09  Score=103.55  Aligned_cols=89  Identities=44%  Similarity=0.743  Sum_probs=78.5

Q ss_pred             hhhhHHHHHHHhhhcCCCCCCCeeecCCCCCCcCCCCccCceeEEecCCCCCchhHHHHHHHHHHHHHHhhccccCCccc
Q psy5575           2 DKSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRMG   81 (668)
Q Consensus         2 erG~~VL~EVk~LY~sG~FtDGQLVsqk~~s~~~~k~IRGDkItWvdG~EpgCe~I~~LIS~mD~LI~~cnrm~~NGkLG   81 (668)
                      |....|++++..|+..|.|++|+++.+...   ..++||+|+|.|+++.++.|+.++.++..||+++..|     |+.+|
T Consensus        38 ee~~~L~~~~~~~~~~g~~~~a~i~~~~~~---~~~~iR~d~i~wl~~~~~~~~~~~~l~~~i~~l~~~l-----n~~lG  109 (247)
T 2hbt_A           38 ETGQQIGDEVRALHDTGKFTDGQLVSQKSD---SSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHC-----NGKLG  109 (247)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCSCCEEECCSS---STTCEECCEEEEECSCSTTCHHHHHHHHHHHHHHHHT-----TTTST
T ss_pred             HHHHHHHHHHHhhhhcCCcccccccccccc---ccccccccceeeecccccchhHHHHHHHHHHHHHHHH-----hhhcC
Confidence            567889999999999999999999873222   2478999999999999999999999999999999998     56799


Q ss_pred             ceEEccccceeeecccc
Q psy5575          82 DFVINGRTKDLRISTVE   98 (668)
Q Consensus        82 ~y~InGRTKAMvise~~   98 (668)
                      .|.|+|++++|++++..
T Consensus       110 l~~i~~~~e~~~~~Y~~  126 (247)
T 2hbt_A          110 SYKINGRTKAMVACYPG  126 (247)
T ss_dssp             TCCEEEECCEEEEEECS
T ss_pred             cccccccceEEEEEecC
Confidence            99999999999999863

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00