Psyllid ID: psy5576

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYFLFV
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHcHHHHHHcHHHHHcccHHHHcccHHHHcccHHHHccccHHHcccHHHHccccHHHccccHHHccccHHHccccHHHccccHHHccccHHHccccHHHccccHHHHcccHHHccccHHHcccccHcccccccEEEEEc
Coil and Loop (DISEMBL)
MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGlkselglncyLTYFLFV
Flexible Loop (DISEMBL)
mrrkekrkseldglkseLHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELhglkselglnCYLTYFLFV
Low Complexity Region (SEG)
MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYFLFV
Disordered region (IsUnstruct)
**********************************************************************************************************************************HGLKSELHGLKSELGLNCYLTYFLF*
Disordered Region (DISOPRED)
*****KR*******************************************************************************************************************************************NCYLTYFLFV
Disordered Region (DISEMBL)
************GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYFLFV
Disordered Region (DISPRO)
*****KRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYFLFV
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLGLNCYLTYFLFV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
P10716	550	C-type lectin domain fami	yes	N/A	0.833	0.236	0.25	4e-07
P70194	548	C-type lectin domain fami	yes	N/A	0.839	0.239	0.241	9e-07
Q8N1N0	589	C-type lectin domain fami	yes	N/A	0.871	0.230	0.272	4e-06
O74424	1837	Nucleoporin nup211 OS=Sch	yes	N/A	0.871	0.074	0.267	4e-05
Q9QYE6	729	Golgin subfamily A member	no	N/A	0.891	0.190	0.254	0.0002
P02977	492	M protein, serotype 5 OS=	N/A	N/A	0.692	0.219	0.342	0.0002
Q02224	2701	Centromere-associated pro	no	N/A	0.871	0.050	0.28	0.0006
P21249	2022	Major antigen OS=Onchocer	N/A	N/A	0.801	0.061	0.246	0.0006
Q8TBA6	731	Golgin subfamily A member	no	N/A	0.878	0.187	0.253	0.0006
O93309	1209	Structural maintenance of	N/A	N/A	0.679	0.087	0.224	0.0008

>sp|P10716|CLC4F_RAT C-type lectin domain family 4 member F OS=Rattus norvegicus GN=Clec4f PE=1 SV=1

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 70/140 (50%), Gaps = 10/140 (7%)

Query: 11  LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL--- 67
           +D + +E+  ++  +     E+  LK +L  L +++      L    +++ GLK++L   
Sbjct: 253 MDNISAEIQAMRDGMQRAGEEMTSLKKDLETLTAQIQNANGHLEQTDTQIQGLKAQLKST 312

Query: 68  HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 127
             L S++  +  +L     EL  L+ +L    S++  LKS +  L+S L   K+E+  LK
Sbjct: 313 SSLNSQIEVVNGKLKDSSRELQTLRRDL----SDVSALKSNVQMLQSNLQKAKAEVQSLK 368

Query: 128 SELHGLKS---ELHGLKSEL 144
           + L   K+   ++ G +S+L
Sbjct: 369 TGLEATKTLAAKIQGQQSDL 388

Receptor with an affinity for galactose and fucose. Could be involved in endocytosis.
Rattus norvegicus (taxid: 10116)

>sp|P70194|CLC4F_MOUSE C-type lectin domain family 4 member F OS=Mus musculus GN=Clec4f PE=1 SV=1

 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 10/141 (7%)

Query: 11  LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL--- 67
           +D + +++  ++  +     +++ LK EL  L ++       L    +++ GLK+EL   
Sbjct: 253 MDNISAQIQTVRDGMERAGEKMNSLKKELETLTAQTQKANGHLEQTDAQIQGLKAELKST 312

Query: 68  HGLKSELHGLKSELHGLKSELHGLK---SELHGLKSELHGLKSELHGLKSELHGLKSELH 124
             L S +  +  ++     EL  L+   S++  LKS +  L+S L   K+E+  LK++L 
Sbjct: 313 SSLNSRIEVVNGQMKDASRELQTLRRDLSDVSALKSNVQMLQSNLQRAKTEMQTLKADLQ 372

Query: 125 GLKSELHGLKSELHGLKSELG 145
             K+    L +++ G ++ LG
Sbjct: 373 ATKA----LTAKIQGEQNRLG 389

Receptor with an affinity for galactose and fucose. Could be involved in endocytosis.

Mus musculus (taxid: 10090)

>sp|Q8N1N0|CLC4F_HUMAN C-type lectin domain family 4 member F OS=Homo sapiens GN=CLEC4F PE=2 SV=2

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 7/143 (4%)

Query: 11  LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 70
           L+ LKS L     ELH L   L    SE+  L + L    ++     S L    +E++ L
Sbjct: 198 LNFLKSSLENTSIELHVLSRGLENANSEIQMLNASLETANTQAQLANSSLKNANAEIYVL 257

Query: 71  K---SELHGLKSELHGLKSELHGLKSELHGLKSEL---HGLKSELHG-LKSELHGLKSEL 123
           +     ++ L+++   L++ L G  +E+ GLK  L   + L S+    +KS      +E+
Sbjct: 258 RGHLDSVNDLRTQNQVLRNSLEGANAEIQGLKENLQNTNALNSQTQAFIKSSFDNTSAEI 317

Query: 124 HGLKSELHGLKSELHGLKSELGL 146
             L+  L     E+H LK +L +
Sbjct: 318 QFLRGHLERAGDEIHVLKRDLKM 340

Receptor with an affinity for galactose and fucose. Could be involved in endocytosis.

Homo sapiens (taxid: 9606)

>sp|O74424|NU211_SCHPO Nucleoporin nup211 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nup211 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 71/172 (41%), Gaps = 36/172 (20%)

Query: 10   ELDGLKSELHGLKSELHGLKSELHG-----------------------------LKSELH 40
            E D  K +++ L  E+  LK E+                               LK EL 
Sbjct: 1381 ETDTFKQQVNSLNEEVENLKKEVEQANTKNTRLAAAWNEKCENLKKSSLTRFAHLKQELT 1440

Query: 41   GLKSELHGLKSELHGLKSELHGLKSELHGLK----SELHGL-KSELHGLKSELHGLKSEL 95
                EL    +E   ++ E+  LK   H L+    S+   + K +   LKSE    + EL
Sbjct: 1441 NKNKELTSKNAENEAMQKEIESLKDSNHQLQESASSDAEQITKEQFEQLKSEKERTEKEL 1500

Query: 96   HGLKSELHGLKSELHGL--KSELHGLKSELHGLKSELHGLKSELHGLKSELG 145
               K+EL  L+SE      K+E+  L+ E+H L+S+  GL  ++  L +EL 
Sbjct: 1501 ADSKNELEHLQSEAVDADGKTEISNLEKEIHELRSDKEGLVQQVQNLSAELA 1552

Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. Active directional transport is assured by both, a Phe-Gly (FG) repeat affinity gradient for these transport factors across the NPC and a transport cofactor concentration gradient across the nuclear envelope.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9QYE6|GOGA5_MOUSE Golgin subfamily A member 5 OS=Mus musculus GN=Golga5 PE=1 SV=2

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 18/157 (11%)

Query: 4   KEKRKSELDGLKSELHGLKSELHGLK----SELHGLKSELHGLKSELHGLKSELHGLKSE 59
           KE +K E+  L  ++H L+SEL  ++    SE    + +L  L+ ++   ++    L++E
Sbjct: 473 KEMQKEEIQKLMGQMHQLRSELQDMEAQQVSEAESAREQLQDLQDQIAKQRTSKQELETE 532

Query: 60  LHGLKSELHGLKSELH----GLKSELHGLKSELHGLKSELHG----------LKSELHGL 105
           L  +K E   ++ +LH     L+S +   + E+  L+++L            L+S LH L
Sbjct: 533 LERMKQEFRYMEEDLHRTKNTLQSRIKDREEEIQKLRNQLTNKTLSNSSQSELESRLHQL 592

Query: 106 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 142
              L   ++ L  L +E + L  +L  L+ ++H   S
Sbjct: 593 TETLIQKQTMLESLSTEKNSLVFQLERLEQQVHSASS 629

Involved in maintaining Golgi structure. Stimulates the formation of Golgi stacks and ribbons. Involved in intra-Golgi retrograde transport.

Mus musculus (taxid: 10090)

>sp|P02977|M5_STRP5 M protein, serotype 5 OS=Streptococcus pyogenes serotype M5 GN=emm5 PE=1 SV=2

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 56/108 (51%)

Query: 8   KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67
           K  LD  + E H LK++  GLK+E  GLK+E  GLK+E  GLK+E    ++E   LK + 
Sbjct: 56  KEALDKYELENHDLKTKNEGLKTENEGLKTENEGLKTENEGLKTEKKEHEAENDKLKQQR 115

Query: 68  HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 115
             L ++   L+ E+   +     LK +   L  EL+  + EL   + E
Sbjct: 116 DTLSTQKETLEREVQNTQYNNETLKIKNGDLTKELNKTRQELANKQQE 163

This protein is one of the different antigenic serotypes of protein M. Protein M is closely associated with virulence of the bacterium and can render the organism resistant to phagocytosis.

Streptococcus pyogenes serotype M5 (taxid: 301449)

>sp|Q02224|CENPE_HUMAN Centromere-associated protein E OS=Homo sapiens GN=CENPE PE=1 SV=2

 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 60/150 (40%), Gaps = 14/150 (9%)

Query: 9   SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 68
           SEL  L SE+  L+ E+     ELH + SE   L SE+   +S + GL  E+   K +L 
Sbjct: 747 SELKSLPSEVERLRKEIQDKSEELHIITSEKDKLFSEVVHKESRVQGLLEEIGKTKDDLA 806

Query: 69  GLKSELHGLKSELHGLKS--------------ELHGLKSELHGLKSELHGLKSELHGLKS 114
             +S       E    K+              E   +  E+  L  E     S L  LK+
Sbjct: 807 TTQSNYKSTDQEFQNFKTLHMDFEQKYKMVLEENERMNQEIVNLSKEAQKFDSSLGALKT 866

Query: 115 ELHGLKSELHGLKSELHGLKSELHGLKSEL 144
           EL     EL     E+    +E+  LK +L
Sbjct: 867 ELSYKTQELQEKTREVQERLNEMEQLKEQL 896

Essential for the maintenance of chromosomal stability through efficient stabilization of microtubule capture at kinetochores. Plays a key role in the movement of chromosomes toward the metaphase plate during mitosis. Is a slow plus end-directed motor whose activity is essential for metaphase chromosome alignment. Couples chromosome position to microtubule depolymerizing activity. The highly processive microtubule-dependent motor activity of CENPE serves to power chromosome congression and provides a flexible, motile tether linking kinetochores to dynamic spindle microtubules. Necessary for the mitotic checkpoint signal at individual kinetochores to prevent aneuploidy due to single chromosome loss. Required for the efficient recruitment of BUBR1, MAD1 and MAD2 to attached and newly unattached kinetochores. Stimulates mammalian BUBR1 kinase activity. Accumulates just before mitosis at the G2 phase of the cell cycle.

Homo sapiens (taxid: 9606)

>sp|P21249|ANT1_ONCVO Major antigen OS=Onchocerca volvulus GN=OVT1 PE=2 SV=2

 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 65/126 (51%)

Query: 13   GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 72
              ++E+  L    + +KS+L+  + +++ L   +   ++++  L  E+H L+ EL   K 
Sbjct: 1038 AARNEIKLLTPTNNEMKSQLNAAEDKINSLNKVITDQQNKIRDLTGEVHHLEGELKDAKG 1097

Query: 73   ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 132
             +  L+SEL   +  +H L  +   L++EL+ +K ++  L  E   LK+     ++E+  
Sbjct: 1098 NVANLESELDTTRERIHLLGEQNASLQTELNKIKGDIDSLFGENDMLKTAKESNEAEIDR 1157

Query: 133  LKSELH 138
            LK +L 
Sbjct: 1158 LKQKLQ 1163

May be a myofibrillar protein.

Onchocerca volvulus (taxid: 6282)

>sp|Q8TBA6|GOGA5_HUMAN Golgin subfamily A member 5 OS=Homo sapiens GN=GOLGA5 PE=1 SV=3

 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 17/154 (11%)

Query: 4   KEKRKSELDGLKSELHGLKSELHGLKS----ELHGLKSELHGLKSELHGLKSELHGLKSE 59
           KE ++ E+  L  ++H L+SEL  +++    E    + +L  L  ++ G K+    L++E
Sbjct: 475 KEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHDQIAGQKASKQELETE 534

Query: 60  LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG----------LKSEL 109
           L  LK E H ++ +L+  K   + L+S +     E+  L+++L            L++ L
Sbjct: 535 LERLKQEFHYIEEDLYRTK---NTLQSRIKDRDEEIQKLRNQLTNKTLSNSSQSELENRL 591

Query: 110 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 143
           H L   L   ++ L  L +E + L  +L  L+ +
Sbjct: 592 HQLTETLIQKQTMLESLSTEKNSLVFQLERLEQQ 625

Involved in maintaining Golgi structure. Stimulates the formation of Golgi stacks and ribbons. Involved in intra-Golgi retrograde transport.

Homo sapiens (taxid: 9606)

>sp|O93309|SMC3_XENLA Structural maintenance of chromosomes protein 3 OS=Xenopus laevis GN=smc3 PE=1 SV=2

 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 57/107 (53%), Gaps = 1/107 (0%)

Query: 42  LKSELHGLKSELHGLKSELH-GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 100
           L+ ++  ++ ELH L+++L+  L+  +  + +E+  L +++  ++++    K+    + S
Sbjct: 678 LQKDVRKVEDELHALEAKLNENLRRNIERINNEIDQLMNQMQQIETQQRKFKASRDSILS 737

Query: 101 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLN 147
           E+  LK +    +      +  L  L++ LH ++S    LK+ELG +
Sbjct: 738 EMKMLKEKRQQSEKTFMPKQRSLQSLEASLHAMESTRESLKAELGTD 784

Central component of cohesin, a complex required for chromosome cohesion during the cell cycle. The cohesin complex may form a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. Cohesion is coupled to DNA replication and is involved in DNA repair. The cohesin complex plays also an important role in spindle pole assembly during mitosis and in chromosomes movement.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
170064222	282	conserved hypothetical protein [Culex qu	0.801	0.443	0.398	3e-36
170037394	570	alpha-amylase [Culex quinquefasciatus] g	0.814	0.222	0.431	4e-36
331228422	145	hypothetical protein PGTG_08415 [Puccini	0.878	0.944	0.430	8e-30
302857942	209	hypothetical protein VOLCADRAFT_38709 [V	0.878	0.655	0.347	3e-29
109947079	409	alpha (1,3)-fucosyltransferase fragment	0.891	0.339	0.435	3e-29
156394242	187	predicted protein [Nematostella vectensi	0.865	0.721	0.525	8e-29
343470282	242	unnamed protein product [Trypanosoma con	0.878	0.566	0.291	8e-26
379012504	198	hypothetical protein Awo_c26740 [Acetoba	0.878	0.691	0.372	7e-25
291227583	151	PREDICTED: predicted protein-like [Sacco	0.852	0.880	0.425	2e-23
421873915	211	hypothetical protein BLGI_3014 [Brevibac	0.878	0.649	0.408	1e-22

>gi|170064222|ref|XP_001867436.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167881698|gb|EDS45081.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 108/133 (81%)

Query: 16  SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 75
           + ++GL+S ++GL+S ++GL+S ++GL+S ++GL+S ++GL+S ++GL+S ++GL+S ++
Sbjct: 105 TAVYGLRSTVYGLRSTVYGLRSTVYGLRSTVYGLRSTVYGLRSTVYGLRSTVYGLRSTVY 164

Query: 76  GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 135
           GL+S ++GL+S ++GL+S ++GL+S ++GL+S ++GL+S ++GL+S ++ L+S ++GL+S
Sbjct: 165 GLRSTVYGLRSTVYGLRSTVYGLRSTVYGLRSTVYGLRSTVYGLRSTVYSLRSTVYGLRS 224

Query: 136 ELHGLKSELGLNC 148
            + GL+  +   C
Sbjct: 225 TVSGLRFRVNATC 237

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170037394|ref|XP_001846543.1| alpha-amylase [Culex quinquefasciatus] gi|167880536|gb|EDS43919.1| alpha-amylase [Culex quinquefasciatus]

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 57/132 (43%), Positives = 112/132 (84%)

Query: 13  GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 72
           GL+S ++GL+S ++GL+S ++GL+S ++GL+S ++GL+S ++GL+S ++GL+S ++GL+S
Sbjct: 435 GLRSTVYGLRSTVYGLRSTVYGLRSTVYGLRSTVYGLRSTVYGLRSTVYGLRSTVYGLRS 494

Query: 73  ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 132
            ++GL+S ++GL+S ++GL+S  +GL+S ++GL+S ++GL+S ++GL+S ++GL+S ++G
Sbjct: 495 TVYGLRSTVYGLRSTVYGLRSTFYGLRSTVYGLRSTVYGLRSTVYGLRSTVYGLRSTVYG 554

Query: 133 LKSELHGLKSEL 144
           L+S ++GL+S +
Sbjct: 555 LRSTVYGLRSTV 566

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|331228422|ref|XP_003326878.1| hypothetical protein PGTG_08415 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 80/137 (58%)

Query: 8   KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67
           KSE+   KSE+   KSE+   KSE+   KSE+   KSE+   KSE+   KSE+   KSE+
Sbjct: 4   KSEIRNQKSEIRNQKSEIRNQKSEIMNQKSEIRNQKSEIRNQKSEIRNQKSEIRNQKSEI 63

Query: 68  HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 127
              KSE+   KSE+   KSE+   KSE+   KSE+   KSE+   KSE+   KSE+   K
Sbjct: 64  RNQKSEIRNQKSEIRNQKSEIRNQKSEIRNQKSEIMNQKSEIRNQKSEIRNQKSEIRNQK 123

Query: 128 SELHGLKSELHGLKSEL 144
           SE+   +SE+   KSE+
Sbjct: 124 SEIMNQESEIRNQKSEI 140

Source: Puccinia graminis f. sp. tritici CRL 75-36-700-3

Species: Puccinia graminis

Genus: Puccinia

Family: Pucciniaceae

Order: Pucciniales

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|302857942|ref|XP_002959983.1| hypothetical protein VOLCADRAFT_38709 [Volvox carteri f. nagariensis] gi|300253677|gb|EFJ38952.1| hypothetical protein VOLCADRAFT_38709 [Volvox carteri f. nagariensis]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 96/164 (58%), Gaps = 27/164 (16%)

Query: 8   KSELDGLKSELHGLKSELHGLKSELHGLKSE---------LHGLKSELHGLKSELHGLKS 58
           +SE +G +SE +G +SE +G +SE +G +SE          +G +SE +G +SE +G +S
Sbjct: 8   RSEYNGTRSEYNGTRSEYNGTRSEYNGTRSEYNGTWHDGDFNGTRSEYNGTRSEYNGTRS 67

Query: 59  ELHGLKSE---------LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 109
           E +G +SE          +G +SE +G +SE +G +SE +  +SE +  +SE +G +SE 
Sbjct: 68  EYNGTRSEYNGTWHDDDFNGTRSEYNGTRSEYNGTRSEYNSTRSEYNVTRSEYNGTRSEY 127

Query: 110 HGLKSE---------LHGLKSELHGLKSELHGLKSELHGLKSEL 144
           +G +SE          +G +SE +G +SE +G +SE +G +SE 
Sbjct: 128 NGTRSEYNGTWHDGDFNGTRSEYNGTRSEYNGTRSEYNGTRSEY 171

Source: Volvox carteri f. nagariensis

Species: Volvox carteri

Genus: Volvox

Family: Volvocaceae

Order: Chlamydomonadales

Class: Chlorophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|109947079|ref|YP_664307.1| alpha (1,3)-fucosyltransferase fragment 3, partial [Helicobacter acinonychis str. Sheeba] gi|109714300|emb|CAJ99308.1| alpha (1,3)-fucosyltransferase fragment 3 [Helicobacter acinonychis str. Sheeba]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/140 (43%), Positives = 97/140 (69%), Gaps = 1/140 (0%)

Query: 8   KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67
           K   DGLK++  GLK++  GLK++  GLK++  GLK++  GLK++  GLK++  GLK++ 
Sbjct: 238 KDNYDGLKTDYDGLKTDYDGLKTDYDGLKTDYDGLKTDYDGLKTDYDGLKTDYDGLKTDY 297

Query: 68  HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 127
            GLK++  GLK++  GLK++  GLK++  GLK++  GLK++  GLK++  GLK++  GLK
Sbjct: 298 DGLKTDYDGLKTDYDGLKTDYDGLKTDYDGLKTDYDGLKTDYDGLKTDYDGLKTDYDGLK 357

Query: 128 SELHGLKSEL-HGLKSELGL 146
           ++  GLK++  H  KS L L
Sbjct: 358 TDYDGLKTDYDHLFKSALPL 377

Source: Helicobacter acinonychis str. Sheeba

Species: Helicobacter acinonychis

Genus: Helicobacter

Family: Helicobacteraceae

Order: Campylobacterales

Class: Epsilonproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|156394242|ref|XP_001636735.1| predicted protein [Nematostella vectensis] gi|156223841|gb|EDO44672.1| predicted protein [Nematostella vectensis]

 Score =  131 bits (330), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 71/135 (52%), Positives = 88/135 (65%)

Query: 9   SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 68
           SE   L+SE H  KSE H L+SE H  +SE H L+SE H  +SE H L+SE H  +SE H
Sbjct: 1   SEHHTLRSEHHTPKSEHHTLRSEHHTPRSEHHTLRSEHHTPRSEHHTLRSEHHTPRSEHH 60

Query: 69  GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 128
            L+SE H L+SE H L+SE H  +SE H  +SE H LKSE H L+SE H  +SE H  +S
Sbjct: 61  TLRSEHHTLRSEHHTLRSEHHTPRSEHHTPRSEHHTLKSEHHTLRSEHHTPRSEHHTPRS 120

Query: 129 ELHGLKSELHGLKSE 143
           E H L+SE H L+SE
Sbjct: 121 EHHTLRSEHHTLRSE 135

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|343470282|emb|CCD16975.1| unnamed protein product [Trypanosoma congolense IL3000]

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 89/137 (64%)

Query: 8   KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67
           KS++  +KS++  +KS++  +KS +  +KS +  +KS +  +KS +  +KS +  +KS +
Sbjct: 61  KSKMQPMKSKMQPMKSKMQPMKSIMQPMKSIMQPMKSIMQPMKSIMQPMKSIMQPMKSIM 120

Query: 68  HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 127
             +KS +  +KS++  +KS++  +KS++  +KS +  +KS +  +KS++  +KS +  +K
Sbjct: 121 QPMKSIMQPMKSKMQPMKSKMQPMKSKMQPVKSIMQPMKSIMQPMKSKIQPMKSIMQPMK 180

Query: 128 SELHGLKSELHGLKSEL 144
           S++  +KS++  +KS++
Sbjct: 181 SKMQPMKSKIQPMKSKI 197

Source: Trypanosoma congolense IL3000

Species: Trypanosoma congolense

Genus: Trypanosoma

Family: Trypanosomatidae

Order: Kinetoplastida

Superkingdom: Eukaryota

>gi|379012504|ref|YP_005270316.1| hypothetical protein Awo_c26740 [Acetobacterium woodii DSM 1030] gi|375303293|gb|AFA49427.1| hypothetical protein Awo_c26740 [Acetobacterium woodii DSM 1030]

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 105/137 (76%)

Query: 18  LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 77
           L+G+K EL  +K+++ G+K+EL  +K+++ G+K+EL  +KS++ G+K+EL  +K+++ G+
Sbjct: 21  LNGVKGELSEVKNDVTGIKAELREVKNDVTGIKTELSEVKSDVTGIKAELSEVKNDVTGI 80

Query: 78  KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 137
           K+EL  +K+++ G+K+EL+ +K+++ G+K+EL  +K ++ G+K+EL+ +K+++ G+K+EL
Sbjct: 81  KAELSEVKNDVTGIKAELNEVKNDVTGIKTELSEVKGDVAGIKTELNEVKNDVVGIKTEL 140

Query: 138 HGLKSELGLNCYLTYFL 154
             +K++L + C  T  L
Sbjct: 141 SEVKTKLDVVCEQTAVL 157

Source: Acetobacterium woodii DSM 1030

Species: Acetobacterium woodii

Genus: Acetobacterium

Family: Eubacteriaceae

Order: Clostridiales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|291227583|ref|XP_002733762.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/134 (42%), Positives = 75/134 (55%)

Query: 10  ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 69
           E+ G  SE+ G  SE+ G  SE+ G  SE+ G  SE+ G  SE+ G  SE+ G  SE+ G
Sbjct: 6   EITGACSEIKGACSEIKGACSEITGACSEITGACSEITGACSEITGACSEITGACSEITG 65

Query: 70  LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 129
             SE+ G  SE+ G  SE+ G  SE+ G  SE+ G  SE+ G  SE+ G  SE+ G  SE
Sbjct: 66  ACSEITGACSEITGACSEITGACSEITGACSEITGACSEITGACSEITGACSEITGACSE 125

Query: 130 LHGLKSELHGLKSE 143
           + G  SE     SE
Sbjct: 126 IMGACSETKCACSE 139

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|421873915|ref|ZP_16305524.1| hypothetical protein BLGI_3014 [Brevibacillus laterosporus GI-9] gi|372457026|emb|CCF15073.1| hypothetical protein BLGI_3014 [Brevibacillus laterosporus GI-9]

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 92/137 (67%)

Query: 8   KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67
           K E+ G+ S++  +++EL+ +K +   +K ++  LKSE + +K ++  +KSE  G+K EL
Sbjct: 29  KKEVSGINSKVSSIEAELNIVKQDSRLIKKDIDWLKSESYSIKKDIDAIKSESSGIKKEL 88

Query: 68  HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 127
             +KSE +G+K EL+ +KSE  G+K EL  LKSE +G+K EL+ +KSE   +K +L  +K
Sbjct: 89  DAIKSESYGIKQELNAIKSESSGIKKELDALKSESNGIKQELNAIKSESSDIKKDLDAIK 148

Query: 128 SELHGLKSELHGLKSEL 144
           SE  G+K++L  +K EL
Sbjct: 149 SESSGIKNDLSIIKKEL 165

Source: Brevibacillus laterosporus GI-9

Species: Brevibacillus laterosporus

Genus: Brevibacillus

Family: Paenibacillaceae

Order: Bacillales

Class: Bacilli

Phylum: Firmicutes

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
UNIPROTKB|Q3ADU7	175	CHY_0834 "Putative uncharacter	0.865	0.771	0.402	1.9e-21
TIGR_CMR|CHY_0834	175	CHY_0834 "conserved hypothetic	0.865	0.771	0.402	1.9e-21
POMBASE|SPCC569.03	375	SPCC569.03 "cell surface glyco	0.903	0.376	0.241	1.4e-12
UNIPROTKB|Q3A9A0	155	CHY_2490 "Conserved domain pro	0.769	0.774	0.25	2.4e-12
TIGR_CMR|CHY_2490	155	CHY_2490 "conserved domain pro	0.769	0.774	0.25	2.4e-12
UNIPROTKB|Q8IIG7	1070	PF11_0207 "Uncharacterized pro	0.884	0.128	0.287	1e-10
DICTYBASE|DDB_G0286985	1024	zipA "zipper-like domain-conta	0.903	0.137	0.269	4.1e-10
UNIPROTKB|Q3ABG1	163	CHY_1703 "Conserved domain pro	0.448	0.429	0.3	1.8e-09
TIGR_CMR|CHY_1703	163	CHY_1703 "conserved domain pro	0.448	0.429	0.3	1.8e-09
UNIPROTKB|H9KZY6	1548	H9KZY6 "Uncharacterized protei	0.858	0.086	0.382	1e-08

UNIPROTKB|Q3ADU7 CHY_0834 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 56/139 (40%), Positives = 98/139 (70%)

Query:     5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
             E+ +S+++GLKS+++G+KS++  LKS+++ LKS++  LKS+++ LKS++  LKS+++ LK
Sbjct:    35 EELRSDVNGLKSDVNGIKSDVSNLKSDINELKSDVSNLKSDINELKSDVSNLKSDVNELK 94

Query:    65 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL--HGLKSE 122
             S++  LKS+++ LKS++  LKS+++ LKS+++ LK     +K E+  +K  L  HG K +
Sbjct:    95 SDVSNLKSDVNELKSDVSNLKSDVNELKSDVNELKISNQQIKEEIAEIKMTLKEHGEKLD 154

Query:   123 LHGLKSELHGLKSELHGLK 141
                LK   H +K  LH LK
Sbjct:   155 YALLKLINHDVK--LHNLK 171

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0834 CHY_0834 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 56/139 (40%), Positives = 98/139 (70%)

Query:     5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
             E+ +S+++GLKS+++G+KS++  LKS+++ LKS++  LKS+++ LKS++  LKS+++ LK
Sbjct:    35 EELRSDVNGLKSDVNGIKSDVSNLKSDINELKSDVSNLKSDINELKSDVSNLKSDVNELK 94

Query:    65 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL--HGLKSE 122
             S++  LKS+++ LKS++  LKS+++ LKS+++ LK     +K E+  +K  L  HG K +
Sbjct:    95 SDVSNLKSDVNELKSDVSNLKSDVNELKSDVNELKISNQQIKEEIAEIKMTLKEHGEKLD 154

Query:   123 LHGLKSELHGLKSELHGLK 141
                LK   H +K  LH LK
Sbjct:   155 YALLKLINHDVK--LHNLK 171

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPCC569.03 SPCC569.03 "cell surface glycoprotein (predicted), DUF1773 family protein 4" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 173 (66.0 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 34/141 (24%), Positives = 80/141 (56%)

Query:     6 KRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 65
             K  S  + + S    +++E+  +K+ +  +K E+  +K E+  +K+++  +K E+  +K 
Sbjct:   114 KMDSMQNDMNSRFDAMQTEMSVMKNGIASIKGEMAEMKGEMTVMKNDIASIKGEMAEMKG 173

Query:    66 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 125
             E+  +K+++  +K E+  +K E+  +K+++  +K E+  +K E+  +KS++  +K E   
Sbjct:   174 EMAVMKNDIASIKGEMAEMKGEMTVMKNDIASIKGEMAEMKGEMTIMKSDIDSVKGETTT 233

Query:   126 LKSELHGLKSELHGLKSELGL 146
             LK E+  +K  +  L  ++ L
Sbjct:   234 LKGEVTAMKDSISQLDRKIDL 254

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0070263 "external side of fungal-type cell wall" evidence=ISM

UNIPROTKB|Q3A9A0 CHY_2490 "Conserved domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 30/120 (25%), Positives = 83/120 (69%)

Query:    11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 70
             LD +K +++ + S L  L   +      +  L+S+++ ++ E++ L++E++ L++E++GL
Sbjct:     6 LDEIKIQINQMSSMLAELIHMVGRTNGAVEELRSDINEMRKEINELRAEVNELRAEVNGL 65

Query:    71 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 130
             K+E + L++E+  LK+E++GL++E++ L++E++ +K+++  ++ ++  ++ ++  +K+ L
Sbjct:    66 KAETNELRAEMSELKAEVNGLRTEMNELRTEMNEMKNKITTMEDKIAAMEKDIAEIKATL 125

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_2490 CHY_2490 "conserved domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 30/120 (25%), Positives = 83/120 (69%)

Query:    11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 70
             LD +K +++ + S L  L   +      +  L+S+++ ++ E++ L++E++ L++E++GL
Sbjct:     6 LDEIKIQINQMSSMLAELIHMVGRTNGAVEELRSDINEMRKEINELRAEVNELRAEVNGL 65

Query:    71 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 130
             K+E + L++E+  LK+E++GL++E++ L++E++ +K+++  ++ ++  ++ ++  +K+ L
Sbjct:    66 KAETNELRAEMSELKAEVNGLRTEMNELRTEMNEMKNKITTMEDKIAAMEKDIAEIKATL 125

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IIG7 PF11_0207 "Uncharacterized protein PF11_0207" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 163 (62.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 42/146 (28%), Positives = 81/146 (55%)

Query:     4 KEKRKSELDGLKSELHGLKSEL-HGLKSELHGLKSEL-HGLKSELHGLKSELHGLKSELH 61
             KE+ K E+  +K E+  +K E+   +K E+  +K E+   +K E+  +K E+  +K E+ 
Sbjct:   497 KEEVKEEIKEIKEEIKEVKEEIKEEIKEEIKEVKEEIKEEIKEEIKEVKEEIKEVKEEIK 556

Query:    62 GLKSELHGLKSELHGLKSELHGLKSEL-HGLKSELHGLKSEL-HGLKSELHGLKSELHGL 119
              +K E+  +K E+   K E+  +K E+   +K E+  +K E+   +K E+  +K E+  +
Sbjct:   557 EVKEEIKEVKEEI---KEEIKEVKEEIKEEIKEEIKEVKEEIKEEVKEEIKEVKEEIKEV 613

Query:   120 KSEL-HGLKSELHGLKSELHGLKSEL 144
             K E+   +K E+  +K E+  +K E+
Sbjct:   614 KEEIKEEVKEEIKEVKEEIKEVKEEI 639

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=NAS

GO:0016020 "membrane" evidence=NAS

DICTYBASE|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 157 (60.3 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 38/141 (26%), Positives = 63/141 (44%)

Query:     4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 63
             KE+  S+     SEL  +K +L    SEL     +L    S++  ++S+L  +K +L   
Sbjct:   629 KEQLSSQSSNTDSELSSVKDQLLSKDSELKSKDEQLSNKDSQIKSIESDLQSVKDQLSSK 688

Query:    64 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123
               EL   K +L     +L    +++  ++S+L  +K +L     EL   K +L     EL
Sbjct:   689 DQELQSTKDQLSSKDEQLSNKDTQIKSIESDLQSVKDQLSSKDQELQSTKDQLSSKDQEL 748

Query:   124 HGLKSELHGLKSELHGLKSEL 144
                K +L     EL   K +L
Sbjct:   749 QSTKDQLSTKDQELQSAKDQL 769

GO:0005615 "extracellular space" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q3ABG1 CHY_1703 "Conserved domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 21/70 (30%), Positives = 44/70 (62%)

Query:    81 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 140
             L  + +++ GL+ E+ G+K E+  L+ E+ G+K E+  ++ E+ G+K E+  ++ E+ G+
Sbjct:     9 LQQIANDVQGLRQEMQGMKQEIKDLQQEMQGMKQEIQDVRQEMQGMKQEIQDIRQEMQGM 68

Query:   141 KSELGLNCYL 150
             K ++  N  L
Sbjct:    69 KQDISKNATL 78

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_1703 CHY_1703 "conserved domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 21/70 (30%), Positives = 44/70 (62%)

Query:    81 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 140
             L  + +++ GL+ E+ G+K E+  L+ E+ G+K E+  ++ E+ G+K E+  ++ E+ G+
Sbjct:     9 LQQIANDVQGLRQEMQGMKQEIKDLQQEMQGMKQEIQDVRQEMQGMKQEIQDIRQEMQGM 68

Query:   141 KSELGLNCYL 150
             K ++  N  L
Sbjct:    69 KQDISKNATL 78

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|H9KZY6 H9KZY6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 146 (56.5 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 54/141 (38%), Positives = 69/141 (48%)

Query:     3 RKEKRK-SELDGLKSELHGLKSELHGLKSELHG-LKSELHGLKSELHG-LKSELHGLKSE 59
             ++E R   E+ G + E H    E HG   E HG L+ E   L+ E HG L+ E HG   E
Sbjct:   851 QEEHRDLQEIHGDQQEEHRDLQEEHGDTQEEHGDLQVEHEDLQVE-HGDLQVE-HGDLQE 908

Query:    60 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG-LKSELHGLKSELHG 118
              HG   E H    E+HG + E HG   E HG   E +G   + HG L+ E HG   E +G
Sbjct:   909 EHGDTQEEHRDLQEVHGDQQEEHGDLQEEHGDLQEGNGDIQKEHGDLQVE-HGDLQEEYG 967

Query:   119 LKSELHGLKSELHGLKSELHG 139
                E H    E+HG + E HG
Sbjct:   968 DTQEEHRDLQEVHGDQQEEHG 988

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005882 "intermediate filament" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	156
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-09
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-09
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-09
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-09
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-08
pfam04582	326	pfam04582, Reo_sigmaC, Reovirus sigma C capsid pro	2e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-08
pfam04582	326	pfam04582, Reo_sigmaC, Reovirus sigma C capsid pro	4e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-08
pfam04582	326	pfam04582, Reo_sigmaC, Reovirus sigma C capsid pro	5e-08
pfam04582	326	pfam04582, Reo_sigmaC, Reovirus sigma C capsid pro	5e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-07
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	4e-07
pfam04582	326	pfam04582, Reo_sigmaC, Reovirus sigma C capsid pro	6e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	3e-06
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	3e-06
smart00787	312	smart00787, Spc7, Spc7 kinetochore protein	7e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	3e-05
pfam04582	326	pfam04582, Reo_sigmaC, Reovirus sigma C capsid pro	4e-05
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	5e-05
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	5e-05
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	6e-05
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	6e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	6e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	8e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	1e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	1e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	4e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	6e-04
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	7e-04
pfam06818	200	pfam06818, Fez1, Fez1	8e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	9e-04
pfam06818	200	pfam06818, Fez1, Fez1	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.002
pfam06818	200	pfam06818, Fez1, Fez1	0.004

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 45/143 (31%), Positives = 76/143 (53%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
           +R++K   E   LK EL  L++EL  +  E    + EL   + +L  LK E++ LK EL 
Sbjct: 350 KRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELD 409

Query: 62  GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
            L+ EL  L  EL  L + + G++++++ L+ E      E+   + +L  L ++L   + 
Sbjct: 410 RLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQ 469

Query: 122 ELHGLKSELHGLKSELHGLKSEL 144
           EL+ LK E   ++ EL  L+ EL
Sbjct: 470 ELYDLKEEYDRVEKELSKLQREL 492

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 50/142 (35%), Positives = 80/142 (56%)

Query: 3   RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 62
           + E R+ EL  L   L  L+ EL  L+ EL   + EL  L +EL  L+ +L  L+ E+  
Sbjct: 219 KAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE 278

Query: 63  LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 122
           L+ E+  L+ EL+ L +E+  L+ +   L+  L  L+ +L  L+++L  L+S+L  L  E
Sbjct: 279 LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338

Query: 123 LHGLKSELHGLKSELHGLKSEL 144
           L  L+ +L  LK EL  L++EL
Sbjct: 339 LAELEEKLEELKEELESLEAEL 360

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 41/145 (28%), Positives = 74/145 (51%)

Query: 1   MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 60
                + K EL+ L++EL  +  E    + EL   + +L  LK E++ LK EL  L+ EL
Sbjct: 356 TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL 415

Query: 61  HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 120
             L  EL  L + + G++++++ L+ E      E+   + +L  L ++L   + EL+ LK
Sbjct: 416 QRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK 475

Query: 121 SELHGLKSELHGLKSELHGLKSELG 145
            E   ++ EL  L+ EL   +++  
Sbjct: 476 EEYDRVEKELSKLQRELAEAEAQAR 500

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.8 bits (127), Expect = 9e-09
 Identities = 42/144 (29%), Positives = 73/144 (50%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
            R  K ++E+D L +E+  L+ E+   +     L  E   LK EL  L++EL  +  E  
Sbjct: 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA 381

Query: 62  GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
             + EL   + +L  LK E++ LK EL  L+ EL  L  EL  L + + G++++++ L+ 
Sbjct: 382 ETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE 441

Query: 122 ELHGLKSELHGLKSELHGLKSELG 145
           E      E+   + +L  L ++L 
Sbjct: 442 EKEDKALEIKKQEWKLEQLAADLS 465

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.8 bits (127), Expect = 9e-09
 Identities = 39/140 (27%), Positives = 69/140 (49%)

Query: 5   EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
              +  +   + EL   +  L  L++E+  L +E+  L+ E+   +     L  E   LK
Sbjct: 304 ASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK 363

Query: 65  SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124
            EL  L++EL  +  E    + EL   + +L  LK E++ LK EL  L+ EL  L  EL 
Sbjct: 364 EELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELA 423

Query: 125 GLKSELHGLKSELHGLKSEL 144
            L + + G++++++ L+ E 
Sbjct: 424 DLNAAIAGIEAKINELEEEK 443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 41/143 (28%), Positives = 73/143 (51%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
           R   +++ EL+  +  L  L++E+  L +E+  L+ E+   +     L  E   LK EL 
Sbjct: 308 RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELE 367

Query: 62  GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
            L++EL  +  E    + EL   + +L  LK E++ LK EL  L+ EL  L  EL  L +
Sbjct: 368 DLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNA 427

Query: 122 ELHGLKSELHGLKSELHGLKSEL 144
            + G++++++ L+ E      E+
Sbjct: 428 AIAGIEAKINELEEEKEDKALEI 450

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 41/144 (28%), Positives = 71/144 (49%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
           + K+  + E   +K ++  L++E+  L+  +   + EL   +  L  L++E+  L +E+ 
Sbjct: 280 KIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE 339

Query: 62  GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
            L+ E+   +     L  E   LK EL  L++EL  +  E    + EL   + +L  LK 
Sbjct: 340 ELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR 399

Query: 122 ELHGLKSELHGLKSELHGLKSELG 145
           E++ LK EL  L+ EL  L  EL 
Sbjct: 400 EINELKRELDRLQEELQRLSEELA 423

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 50/140 (35%), Positives = 83/140 (59%)

Query: 3   RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 62
           R E+ + EL+ L+ EL   + EL  L +EL  L+ +L  L+ E+  L+ E+  L+ EL+ 
Sbjct: 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292

Query: 63  LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 122
           L +E+  L+ +   L+  L  L+ +L  L+++L  L+S+L  L  EL  L+ +L  LK E
Sbjct: 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352

Query: 123 LHGLKSELHGLKSELHGLKS 142
           L  L++EL  L++EL  L+S
Sbjct: 353 LESLEAELEELEAELEELES 372

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 39/143 (27%), Positives = 75/143 (52%), Gaps = 3/143 (2%)

Query: 6   KRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 65
             + +L+ LK E++ LK EL  L+ EL  L  EL  L + + G++++++ L+ E      
Sbjct: 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAL 448

Query: 66  ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 125
           E+   + +L  L ++L   + EL+ LK E   ++ EL  L+ EL   +++    +  + G
Sbjct: 449 EIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRG 508

Query: 126 LKSELHGLKSEL---HGLKSELG 145
            ++    LK+ +   HG  ++LG
Sbjct: 509 GRAVEEVLKASIQGVHGTVAQLG 531

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 41/143 (28%), Positives = 71/143 (49%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
           R  E  +  L  L++E+  L +E+  L+ E+   +     L  E   LK EL  L++EL 
Sbjct: 315 RELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELE 374

Query: 62  GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
            +  E    + EL   + +L  LK E++ LK EL  L+ EL  L  EL  L + + G+++
Sbjct: 375 EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA 434

Query: 122 ELHGLKSELHGLKSELHGLKSEL 144
           +++ L+ E      E+   + +L
Sbjct: 435 KINELEEEKEDKALEIKKQEWKL 457

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 42/140 (30%), Positives = 79/140 (56%)

Query: 7   RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 66
           R+ E++ L+ ++  L+ ++  L+  L  L+ EL  L+ EL  L+ EL  L  ++  L+ +
Sbjct: 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734

Query: 67  LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 126
           L  L++E+  L+  +  L  EL  L++E+  L+  L   + EL   ++E+  L++++  L
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794

Query: 127 KSELHGLKSELHGLKSELGL 146
           K EL  L+  L  L++EL L
Sbjct: 795 KEELKALREALDELRAELTL 814

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|113356 pfam04582, Reo_sigmaC, Reovirus sigma C capsid protein

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 4/117 (3%)

Query: 31  ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 90
           +L  +   L  L+S    L   +  + S L  L ++L  + + L   K+ L+GL + +  
Sbjct: 29  DLTPIYERLTNLESATASLSESVSTISSRLSDLSADLQDMTTSLDDAKATLNGLITTVQA 88

Query: 91  LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLN 147
           L++ +  L SEL  L   +    + +  L++ +H   +++  LKS +    S  GLN
Sbjct: 89  LQTSVDSLSSELADLSLTVSAHDAAISDLQTTVHANSTDISNLKSSV----SANGLN 141

Length = 326

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 39/143 (27%), Positives = 72/143 (50%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
            +  + ++E+  L+  +   + EL   +  L  L++E+  L +E+  L+ E+   +    
Sbjct: 294 EKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRD 353

Query: 62  GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
            L  E   LK EL  L++EL  +  E    + EL   + +L  LK E++ LK EL  L+ 
Sbjct: 354 KLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQE 413

Query: 122 ELHGLKSELHGLKSELHGLKSEL 144
           EL  L  EL  L + + G+++++
Sbjct: 414 ELQRLSEELADLNAAIAGIEAKI 436

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 40/137 (29%), Positives = 68/137 (49%)

Query: 8   KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67
           K ++  L++E+  L+  +   + EL   +  L  L++E+  L +E+  L+ E+   +   
Sbjct: 293 KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR 352

Query: 68  HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 127
             L  E   LK EL  L++EL  +  E    + EL   + +L  LK E++ LK EL  L+
Sbjct: 353 DKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQ 412

Query: 128 SELHGLKSELHGLKSEL 144
            EL  L  EL  L + +
Sbjct: 413 EELQRLSEELADLNAAI 429

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|113356 pfam04582, Reo_sigmaC, Reovirus sigma C capsid protein

 Score = 50.7 bits (121), Expect = 4e-08
 Identities = 25/107 (23%), Positives = 51/107 (47%)

Query: 10  ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 69
           +L  +   L  L+S    L   +  + S L  L ++L  + + L   K+ L+GL + +  
Sbjct: 29  DLTPIYERLTNLESATASLSESVSTISSRLSDLSADLQDMTTSLDDAKATLNGLITTVQA 88

Query: 70  LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 116
           L++ +  L SEL  L   +    + +  L++ +H   +++  LKS +
Sbjct: 89  LQTSVDSLSSELADLSLTVSAHDAAISDLQTTVHANSTDISNLKSSV 135

Length = 326

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 48/135 (35%), Positives = 79/135 (58%)

Query: 10  ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 69
            L+ L+ EL  L+ EL   + EL  L +EL  L+ +L  L+ E+  L+ E+  L+ EL+ 
Sbjct: 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292

Query: 70  LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 129
           L +E+  L+ +   L+  L  L+ +L  L+++L  L+S+L  L  EL  L+ +L  LK E
Sbjct: 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352

Query: 130 LHGLKSELHGLKSEL 144
           L  L++EL  L++EL
Sbjct: 353 LESLEAELEELEAEL 367

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|113356 pfam04582, Reo_sigmaC, Reovirus sigma C capsid protein

 Score = 50.3 bits (120), Expect = 5e-08
 Identities = 25/107 (23%), Positives = 51/107 (47%)

Query: 17  ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 76
           +L  +   L  L+S    L   +  + S L  L ++L  + + L   K+ L+GL + +  
Sbjct: 29  DLTPIYERLTNLESATASLSESVSTISSRLSDLSADLQDMTTSLDDAKATLNGLITTVQA 88

Query: 77  LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123
           L++ +  L SEL  L   +    + +  L++ +H   +++  LKS +
Sbjct: 89  LQTSVDSLSSELADLSLTVSAHDAAISDLQTTVHANSTDISNLKSSV 135

Length = 326

>gnl|CDD|113356 pfam04582, Reo_sigmaC, Reovirus sigma C capsid protein

 Score = 50.3 bits (120), Expect = 5e-08
 Identities = 25/107 (23%), Positives = 51/107 (47%)

Query: 24  ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 83
           +L  +   L  L+S    L   +  + S L  L ++L  + + L   K+ L+GL + +  
Sbjct: 29  DLTPIYERLTNLESATASLSESVSTISSRLSDLSADLQDMTTSLDDAKATLNGLITTVQA 88

Query: 84  LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 130
           L++ +  L SEL  L   +    + +  L++ +H   +++  LKS +
Sbjct: 89  LQTSVDSLSSELADLSLTVSAHDAAISDLQTTVHANSTDISNLKSSV 135

Length = 326

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 50.1 bits (120), Expect = 8e-08
 Identities = 39/118 (33%), Positives = 65/118 (55%)

Query: 28  LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 87
             +EL  L+  L GLK EL  L+SEL  +++ L  L  EL     ++  ++ E+  L+ E
Sbjct: 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE 731

Query: 88  LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELG 145
              LK  L  L+ +L  L+ E+  +KSEL  L++ +  L+ +LH L+  L+ L++ L 
Sbjct: 732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS 789

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 50.1 bits (120), Expect = 9e-08
 Identities = 40/140 (28%), Positives = 71/140 (50%)

Query: 5   EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
           +K  +E++ L+ E+   +     L  E   LK EL  L++EL  +  E    + EL   +
Sbjct: 332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391

Query: 65  SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124
            +L  LK E++ LK EL  L+ EL  L  EL  L + + G++++++ L+ E      E+ 
Sbjct: 392 EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK 451

Query: 125 GLKSELHGLKSELHGLKSEL 144
             + +L  L ++L   + EL
Sbjct: 452 KQEWKLEQLAADLSKYEQEL 471

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 39/117 (33%), Positives = 65/117 (55%)

Query: 14  LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 73
             +EL  L+  L GLK EL  L+SEL  +++ L  L  EL     ++  ++ E+  L+ E
Sbjct: 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE 731

Query: 74  LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 130
              LK  L  L+ +L  L+ E+  +KSEL  L++ +  L+ +LH L+  L+ L++ L
Sbjct: 732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 39/117 (33%), Positives = 65/117 (55%)

Query: 21  LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 80
             +EL  L+  L GLK EL  L+SEL  +++ L  L  EL     ++  ++ E+  L+ E
Sbjct: 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE 731

Query: 81  LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 137
              LK  L  L+ +L  L+ E+  +KSEL  L++ +  L+ +LH L+  L+ L++ L
Sbjct: 732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
            R E+ + +L+ L+S++  L+ ++  L +E+  L++ L  L+     L+ E+  L  +L 
Sbjct: 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE 431

Query: 62  GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
             ++EL  L++EL  L+ EL  L+ EL  L+  L  L+ EL   +  L   + EL  L++
Sbjct: 432 --EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489

Query: 122 ELHGLKSELHGLKSELHGLK 141
            L  L+     L+    G+K
Sbjct: 490 RLDSLERLQENLEGFSEGVK 509

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 39/116 (33%), Positives = 65/116 (56%)

Query: 8   KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67
            +EL  L+  L GLK EL  L+SEL  +++ L  L  EL     ++  ++ E+  L+ E 
Sbjct: 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEE 732

Query: 68  HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123
             LK  L  L+ +L  L+ E+  +KSEL  L++ +  L+ +LH L+  L+ L++ L
Sbjct: 733 EKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 43/140 (30%), Positives = 77/140 (55%), Gaps = 5/140 (3%)

Query: 8   KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67
           ++EL+ L++EL  L+S L  L+ +L  L+S++  L+ ++  L +E+  L++ L  L+   
Sbjct: 357 EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416

Query: 68  HGLKSELHGL-----KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 122
             L+ E+  L     ++EL  L++EL  L+ EL  L+ EL  L+  L  L+ EL   +  
Sbjct: 417 ERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQA 476

Query: 123 LHGLKSELHGLKSELHGLKS 142
           L   + EL  L++ L  L+ 
Sbjct: 477 LDAAERELAQLQARLDSLER 496

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 37/141 (26%), Positives = 70/141 (49%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
              E+   E    + EL   + +L  LK E++ LK EL  L+ EL  L  EL  L + + 
Sbjct: 371 AELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIA 430

Query: 62  GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
           G++++++ L+ E      E+   + +L  L ++L   + EL+ LK E   ++ EL  L+ 
Sbjct: 431 GIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490

Query: 122 ELHGLKSELHGLKSELHGLKS 142
           EL   +++    +  + G ++
Sbjct: 491 ELAEAEAQARASEERVRGGRA 511

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 1/137 (0%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS-ELHGLKSEL 60
           R+KE  + +L  L+ EL  L  E+  L+  L  ++  L  L  ++  L   E   +K ++
Sbjct: 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKI 296

Query: 61  HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 120
             L++E+  L+  +   + EL   +  L  L++E+  L +E+  L+ E+   +     L 
Sbjct: 297 GELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT 356

Query: 121 SELHGLKSELHGLKSEL 137
            E   LK EL  L++EL
Sbjct: 357 EEYAELKEELEDLRAEL 373

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 42/144 (29%), Positives = 78/144 (54%), Gaps = 2/144 (1%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
            R E  K EL  L+SEL  +++ L  L  EL     ++  ++ E+  L+ E   LK  L 
Sbjct: 681 ERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLE 740

Query: 62  GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
            L+ +L  L+ E+  +KSEL  L++ +  L+ +LH L+  L+ L++ L    S +  +++
Sbjct: 741 ELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL--SHSRIPEIQA 798

Query: 122 ELHGLKSELHGLKSELHGLKSELG 145
           EL  L+ E+  +++ L  ++ +L 
Sbjct: 799 ELSKLEEEVSRIEARLREIEQKLN 822

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 12/147 (8%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH-GLKSEL 60
            RK   +++L+ + +++  L++EL GL+++L  L+ +L  +  EL   +     GL S L
Sbjct: 137 SRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRL 196

Query: 61  HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 120
             L+ E      E    + EL  L++EL  LK ++  L+ E   ++      + E   + 
Sbjct: 197 ELLELE-----RERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQT---FREE---VL 245

Query: 121 SELHGLKSELHGLKSELHGLKSELGLN 147
            EL   ++ L  L+  L+  +  L   
Sbjct: 246 EELTEAQARLAELRERLNKARDRLQRL 272

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|113356 pfam04582, Reo_sigmaC, Reovirus sigma C capsid protein

 Score = 47.2 bits (112), Expect = 6e-07
 Identities = 20/80 (25%), Positives = 41/80 (51%)

Query: 9   SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 68
           S L  L ++L  + + L   K+ L+GL + +  L++ +  L SEL  L   +    + + 
Sbjct: 56  SRLSDLSADLQDMTTSLDDAKATLNGLITTVQALQTSVDSLSSELADLSLTVSAHDAAIS 115

Query: 69  GLKSELHGLKSELHGLKSEL 88
            L++ +H   +++  LKS +
Sbjct: 116 DLQTTVHANSTDISNLKSSV 135

Length = 326

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 1/145 (0%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS-EL 60
           + KE  + + + ++ +L  L+ EL  L  E+  L+  L  ++  L  L  ++  L   E 
Sbjct: 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ 289

Query: 61  HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 120
             +K ++  L++E+  L+  +   + EL   +  L  L++E+  L +E+  L+ E+   +
Sbjct: 290 LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER 349

Query: 121 SELHGLKSELHGLKSELHGLKSELG 145
                L  E   LK EL  L++EL 
Sbjct: 350 KRRDKLTEEYAELKEELEDLRAELE 374

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 2/132 (1%)

Query: 14  LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 73
           LK+EL  L  EL  L   L  L+ EL  L+ EL   + EL  L +EL  L+ +L  L+ E
Sbjct: 218 LKAELREL--ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLE 275

Query: 74  LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 133
           +  L+ E+  L+ EL+ L +E+  L+ +   L+  L  L+ +L  L+++L  L+S+L  L
Sbjct: 276 VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL 335

Query: 134 KSELHGLKSELG 145
             EL  L+ +L 
Sbjct: 336 AEELAELEEKLE 347

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 11/128 (8%)

Query: 28  LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH-GLKS 86
            +S    L+++L  + +++  L++EL GL+++L  L+ +L  +  EL   +     GL S
Sbjct: 135 FESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVS 194

Query: 87  ELHGLKSE--LHGLKSELHGLKSELHGLKSELHGLKSELHGLKS--------ELHGLKSE 136
            L  L+ E      + EL  L++EL  LK ++  L+ E   ++         EL   ++ 
Sbjct: 195 RLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQAR 254

Query: 137 LHGLKSEL 144
           L  L+  L
Sbjct: 255 LAELRERL 262

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 29/120 (24%), Positives = 57/120 (47%)

Query: 10  ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 69
           +LD ++ +L  L++EL   + E    ++E    +SEL   + E   ++ EL   +  L  
Sbjct: 75  QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAK 134

Query: 70  LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 129
            + EL  L  +   L++ L  L  +   L+++   L++    L++    LKS++  LK  
Sbjct: 135 AQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLR 194

Length = 499

>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 18/159 (11%)

Query: 5   EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
           E R   L+GLK    GL   L GLK +   L  EL  L S    L+     L+ EL  LK
Sbjct: 136 EWRMKLLEGLK---EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLK 192

Query: 65  -----------SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 113
                      +EL   K +L  L  E+     +L  L+ EL  L+S++  L ++   L 
Sbjct: 193 QLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELN 252

Query: 114 SELHGLKSELHGLK----SELHGLKSELHGLKSELGLNC 148
           +E+   + +L   +     E+  LK +L  L+S  G   
Sbjct: 253 TEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTGWKI 291

This domain is found in cell division proteins which are required for kinetochore-spindle association. Length = 312

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.3 bits (105), Expect = 9e-06
 Identities = 37/135 (27%), Positives = 74/135 (54%)

Query: 10  ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 69
           EL  L+ E+  +++ L  ++ +L+ L  E   L+ E+  L+ +   LK ++  ++ E+  
Sbjct: 799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858

Query: 70  LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 129
           L  +   L+ EL  L++ L  L+S L  LK E   L+++L  L+ ++  L++++   +  
Sbjct: 859 LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918

Query: 130 LHGLKSELHGLKSEL 144
           L  LK++L  L+ EL
Sbjct: 919 LSELKAKLEALEEEL 933

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 35/142 (24%), Positives = 69/142 (48%), Gaps = 3/142 (2%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
            R E R  E++   + L   K  L   + E+  L+ +   LK ++  ++ E+  L  +  
Sbjct: 808 SRIEARLREIEQKLNRLTLEKEYL---EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864

Query: 62  GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
            L+ EL  L++ L  L+S L  LK E   L+++L  L+ ++  L++++   +  L  LK+
Sbjct: 865 ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKA 924

Query: 122 ELHGLKSELHGLKSELHGLKSE 143
           +L  L+ EL  ++      +  
Sbjct: 925 KLEALEEELSEIEDPKGEDEEI 946

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 35/136 (25%), Positives = 72/136 (52%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
               K + E+  +++ L  ++ +L+ L  E   L+ E+  L+ +   LK ++  ++ E+ 
Sbjct: 798 AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857

Query: 62  GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
            L  +   L+ EL  L++ L  L+S L  LK E   L+++L  L+ ++  L++++   + 
Sbjct: 858 NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRK 917

Query: 122 ELHGLKSELHGLKSEL 137
            L  LK++L  L+ EL
Sbjct: 918 RLSELKAKLEALEEEL 933

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 42.3 bits (99), Expect = 3e-05
 Identities = 28/120 (23%), Positives = 56/120 (46%)

Query: 24  ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 83
           +L  ++ +L  L++EL   + E    ++E    +SEL   + E   ++ EL   +  L  
Sbjct: 75  QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAK 134

Query: 84  LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 143
            + EL  L  +   L++ L  L  +   L+++   L++    L++    LKS++  LK  
Sbjct: 135 AQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLR 194

Length = 499

>gnl|CDD|113356 pfam04582, Reo_sigmaC, Reovirus sigma C capsid protein

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 8   KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67
           K+ L+GL + +  L++ +  L SEL  L   +    + +  L++ +H   +++  LKS +
Sbjct: 76  KATLNGLITTVQALQTSVDSLSSELADLSLTVSAHDAAISDLQTTVHANSTDISNLKSSV 135

Length = 326

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 7/149 (4%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
           R KE RK  L   K+EL  L   L  L+ EL  L++++  L+SE+  ++  +   + +L 
Sbjct: 25  RIKEIRK-ALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS 83

Query: 62  GLKS--ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 119
            +K   EL  L  E+   K  ++ L+ EL  L  E+  L+ E+  LK  L  L+  L   
Sbjct: 84  AVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEA 143

Query: 120 KS----ELHGLKSELHGLKSELHGLKSEL 144
           ++    E+  ++ E   L S+   LK +L
Sbjct: 144 EARLEEEVAEIREEGQELSSKREELKEKL 172

Length = 239

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 3/132 (2%)

Query: 5   EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
           EK++   D + +E    K ++  L++EL   + E   L +EL  LK+EL  LK ++  L+
Sbjct: 376 EKKQKNFDKILAEW---KRKVDELQAELDTAQREARNLSTELFRLKNELEELKDQVEALR 432

Query: 65  SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124
            E   L+ E+H L  +L      +H L+     L++E   L++ L   ++ L   +S++ 
Sbjct: 433 RENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEAEAALELEESKVL 492

Query: 125 GLKSELHGLKSE 136
             + EL  ++SE
Sbjct: 493 RAQVELSQIRSE 504

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 33/114 (28%), Positives = 61/114 (53%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
           R+ ++ ++ELD  + E   L +EL  LK+EL  LK ++  L+ E   L+ E+H L  +L 
Sbjct: 391 RKVDELQAELDTAQREARNLSTELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQLG 450

Query: 62  GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 115
                +H L+     L++E   L++ L   ++ L   +S++   + EL  ++SE
Sbjct: 451 EGGRNVHELEKARRRLEAEKDELQAALEEAEAALELEESKVLRAQVELSQIRSE 504

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 34/128 (26%), Positives = 65/128 (50%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
           ++++     L   K ++  L++EL   + E   L +EL  LK+EL  LK ++  L+ E  
Sbjct: 377 KKQKNFDKILAEWKRKVDELQAELDTAQREARNLSTELFRLKNELEELKDQVEALRRENK 436

Query: 62  GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
            L+ E+H L  +L      +H L+     L++E   L++ L   ++ L   +S++   + 
Sbjct: 437 NLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEAEAALELEESKVLRAQV 496

Query: 122 ELHGLKSE 129
           EL  ++SE
Sbjct: 497 ELSQIRSE 504

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 53/162 (32%), Positives = 72/162 (44%), Gaps = 22/162 (13%)

Query: 5   EKRKSELDGLKSELHGLKSELHGLKSEL---HGLKSELHGLKSELHGLKSELHGLKSELH 61
           EK+  E + LK +L  LK E+  LK EL     LK +L  L+ +L  L+ EL  L  EL 
Sbjct: 521 EKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELE 580

Query: 62  G--------LKSELHGLKS------ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 107
                    L+  L  L+       EL   + EL   + EL  L+ EL     EL   + 
Sbjct: 581 ELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEK 640

Query: 108 ELHGLKSELHGLKS-----ELHGLKSELHGLKSELHGLKSEL 144
            L  L+ EL  L+      E   L+ E   L  EL GL++EL
Sbjct: 641 RLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAEL 682

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 38/149 (25%), Positives = 77/149 (51%), Gaps = 5/149 (3%)

Query: 1   MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 60
                + ++ LD L  EL     ++  ++ E+  L+ E   LK  L  L+ +L  L+ E+
Sbjct: 694 QSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753

Query: 61  HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG-----LKSELHGLKSELHGLKSE 115
             +KSEL  L++ +  L+ +LH L+  L+ L++ L       +++EL  L+ E+  +++ 
Sbjct: 754 ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEAR 813

Query: 116 LHGLKSELHGLKSELHGLKSELHGLKSEL 144
           L  ++ +L+ L  E   L+ E+  L+ + 
Sbjct: 814 LREIEQKLNRLTLEKEYLEKEIQELQEQR 842

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 54/177 (30%), Positives = 71/177 (40%), Gaps = 36/177 (20%)

Query: 5   EKRKSELDGLKSELHGLKSEL---HGLKSELHGLKSELHGLKSELHGLKSELHGL----- 56
           EK K +L  LK E+  LK EL     LK +L  L+ +L  L+ EL  L  EL  L     
Sbjct: 528 EKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESV 587

Query: 57  -----------------------KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 93
                                  + EL   + EL  L+ EL     EL   +  L  L+ 
Sbjct: 588 EELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRK 647

Query: 94  ELHGLKS-----ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELG 145
           EL  L+      E   L+ E   L  EL GL++EL  L+     +K  L  LK EL 
Sbjct: 648 ELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE 704

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 35/139 (25%), Positives = 75/139 (53%)

Query: 7   RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 66
             S +  +++EL  L+ E+  +++ L  ++ +L+ L  E   L+ E+  L+ +   LK +
Sbjct: 789 SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ 848

Query: 67  LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 126
           +  ++ E+  L  +   L+ EL  L++ L  L+S L  LK E   L+++L  L+ ++  L
Sbjct: 849 IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908

Query: 127 KSELHGLKSELHGLKSELG 145
           ++++   +  L  LK++L 
Sbjct: 909 EAQIEKKRKRLSELKAKLE 927

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 37/134 (27%), Positives = 65/134 (48%)

Query: 4   KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 63
           K + +SEL+ L+ EL    +    L+ +       L   K ++  L++EL   + E   L
Sbjct: 351 KSRLQSELEDLQIELERANAAASELEKKQKNFDKILAEWKRKVDELQAELDTAQREARNL 410

Query: 64  KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 123
            +EL  LK+EL  LK ++  L+ E   L+ E+H L  +L      +H L+     L++E 
Sbjct: 411 STELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEK 470

Query: 124 HGLKSELHGLKSEL 137
             L++ L   ++ L
Sbjct: 471 DELQAALEEAEAAL 484

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 5/137 (3%)

Query: 5   EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
           EK   EL+ LK E+  L+ EL  L+     L+ ++  L+  +  LK E+  L+ ++  LK
Sbjct: 227 EKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK 286

Query: 65  SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124
            EL     E   L         EL  ++  L  L+ E++G++  +     EL   +  L 
Sbjct: 287 -ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI----KELEEKEERLE 341

Query: 125 GLKSELHGLKSELHGLK 141
            LK +L  L+  L  L+
Sbjct: 342 ELKKKLKELEKRLEELE 358

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 11/147 (7%)

Query: 4   KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL 63
           K+    EL+    E   LK +L  LK E+  LK EL     +L  LK +L  L+ +L  L
Sbjct: 513 KKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKEL----EKLEELKKKLAELEKKLDEL 568

Query: 64  KSELHGLKSELHGLK-SELHGLKSELHGLKS------ELHGLKSELHGLKSELHGLKSEL 116
           + EL  L  EL  L    +  L+  L  L+       EL   + EL   + EL  L+ EL
Sbjct: 569 EEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEEL 628

Query: 117 HGLKSELHGLKSELHGLKSELHGLKSE 143
                EL   +  L  L+ EL  L+ +
Sbjct: 629 DKAFEELAETEKRLEELRKELEELEKK 655

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 39/171 (22%), Positives = 78/171 (45%), Gaps = 26/171 (15%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHG-------------------- 41
           +  E  KSEL  L++ +  L+ +LH L+  L+ L++ L                      
Sbjct: 751 QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRI 810

Query: 42  ------LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 95
                 ++ +L+ L  E   L+ E+  L+ +   LK ++  ++ E+  L  +   L+ EL
Sbjct: 811 EARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870

Query: 96  HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGL 146
             L++ L  L+S L  LK E   L+++L  L+ ++  L++++   +  L  
Sbjct: 871 EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE 921

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 3/140 (2%)

Query: 5   EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
           EK KS L   +SEL  L+ EL    +    L+ +       L   K ++  L++EL   +
Sbjct: 348 EKTKSRL---QSELEDLQIELERANAAASELEKKQKNFDKILAEWKRKVDELQAELDTAQ 404

Query: 65  SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 124
            E   L +EL  LK+EL  LK ++  L+ E   L+ E+H L  +L      +H L+    
Sbjct: 405 REARNLSTELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEKARR 464

Query: 125 GLKSELHGLKSELHGLKSEL 144
            L++E   L++ L   ++ L
Sbjct: 465 RLEAEKDELQAALEEAEAAL 484

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 52/149 (34%), Positives = 80/149 (53%), Gaps = 8/149 (5%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSEL------HGLKSELHGLKSELHG 55
            RKE+ + +L+  +  L  L+  L  L+ +L  L+ +         LK+EL  L+  L  
Sbjct: 172 ERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELAL-- 229

Query: 56  LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 115
           L ++L  L+ EL  L+ EL  L+ EL  L+ EL   + E+  LKSEL  L+ EL  L+ E
Sbjct: 230 LLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEE 289

Query: 116 LHGLKSELHGLKSELHGLKSELHGLKSEL 144
           L  LK E+  L+ E+  L+  L  L++EL
Sbjct: 290 LLELKEEIEELEGEISLLRERLEELENEL 318

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 4/127 (3%)

Query: 3   RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 62
             ++   EL  L + + G++++++ L+ E      E+   + +L  L ++L   + EL+ 
Sbjct: 414 ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD 473

Query: 63  LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 122
           LK E   ++ EL  L+ EL   +++    +  + G ++    LK+ + G    +HG  ++
Sbjct: 474 LKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQG----VHGTVAQ 529

Query: 123 LHGLKSE 129
           L  +   
Sbjct: 530 LGSVGER 536

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 12/155 (7%)

Query: 3   RKEKRKSELDGLKSELHGLKSELHGLKS---ELHGLKSELHGLKSELHGLKSELHGLKSE 59
             E+   E++ + SEL  L+ EL  L+    EL  LK E+  L+ EL  L+     L+ +
Sbjct: 201 ELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEK 260

Query: 60  LHGLKSELHGLKSELHGLKS------ELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 113
           +  L+  +  LK E+  L+       EL     E   L         EL  ++  L  L+
Sbjct: 261 IRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLE 320

Query: 114 SELHGLK---SELHGLKSELHGLKSELHGLKSELG 145
            E++G++    EL   +  L  LK +L  L+  L 
Sbjct: 321 EEINGIEERIKELEEKEERLEELKKKLKELEKRLE 355

Length = 880

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 38.5 bits (89), Expect = 7e-04
 Identities = 25/111 (22%), Positives = 49/111 (44%)

Query: 5   EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 64
              ++EL   + E    ++E    +SEL   + E   ++ EL   +  L   + EL  L 
Sbjct: 84  RALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLT 143

Query: 65  SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 115
            +   L++ L  L  +   L+++   L++    L++    LKS++  LK  
Sbjct: 144 KQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLR 194

Length = 499

>gnl|CDD|219189 pfam06818, Fez1, Fez1

 Score = 38.0 bits (88), Expect = 8e-04
 Identities = 35/135 (25%), Positives = 67/135 (49%)

Query: 10  ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 69
           E+  LK +L   ++EL     E+  L+++L   +++L   + +L  L+  L     EL  
Sbjct: 11  EISLLKQQLKESQAELAQKAGEIVSLRAQLREARAQLRESEEQLQELQDALRTKTLELEV 70

Query: 70  LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE 129
            ++EL   KSE   L+ +   L++EL  L+  L    + L  L +E    K++    ++ 
Sbjct: 71  CENELQRKKSEAELLREKAGRLEAELAELREALASCPAPLPVLLTESDEAKAQRQAGEAG 130

Query: 130 LHGLKSELHGLKSEL 144
           L  L+ ++  L++EL
Sbjct: 131 LRELRRQVERLRAEL 145

This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth. Note that some family members contain more than one copy of this region. Length = 200

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
              ++++ EL+ +  E++ + SEL  L+ EL  L+ E      EL  LK E+  L+ EL 
Sbjct: 193 ELIKEKEKELEEVLREINEISSELPELREELEKLEKE----VKELEELKEEIEELEKELE 248

Query: 62  GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
            L+     L+ ++  L+  +  LK E+  L+ ++  LK EL     E   L         
Sbjct: 249 SLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLD 307

Query: 122 ELHGLKSELHGLKSELHGLKSEL 144
           EL  ++  L  L+ E++G++  +
Sbjct: 308 ELREIEKRLSRLEEEINGIEERI 330

Length = 880

>gnl|CDD|219189 pfam06818, Fez1, Fez1

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 27/104 (25%), Positives = 48/104 (46%)

Query: 52  ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG 111
           E+  LK +L   ++EL     E+  L+++L   +++L   + +L  L+  L     EL  
Sbjct: 11  EISLLKQQLKESQAELAQKAGEIVSLRAQLREARAQLRESEEQLQELQDALRTKTLELEV 70

Query: 112 LKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYFLF 155
            ++EL   KSE   L+ +   L++EL  L+  L         L 
Sbjct: 71  CENELQRKKSEAELLREKAGRLEAELAELREALASCPAPLPVLL 114

This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth. Note that some family members contain more than one copy of this region. Length = 200

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
            + E+   +++ L +E+  L+  +  L+SEL  L +E   L+  L  L+SEL  L  EL 
Sbjct: 845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904

Query: 62  GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
            L+S+   L+ EL  L+ +L  L+  L GL+  +  L+  L    SE + L  E      
Sbjct: 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL----SEEYSLTLEEAEALE 960

Query: 122 ELHGLKSELHGLKSELHGLKSEL 144
               ++ +    +  L  L++++
Sbjct: 961 N--KIEDDEEEARRRLKRLENKI 981

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 6/130 (4%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGL-----KSELHGLKSELHGLKSELHGL 56
            +     +E++ L++ L  L+     L+ E+  L     ++EL  L++EL  L+ EL  L
Sbjct: 393 LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEEL 452

Query: 57  KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 116
           + EL  L+  L  L+ EL   +  L   + EL  L++ L  L+     L+    G+K+ L
Sbjct: 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALL 512

Query: 117 HGLKSELHGL 126
              +S L G+
Sbjct: 513 KN-QSGLSGI 521

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 5/145 (3%)

Query: 2   RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
           +  E  +     L+ ++  L+  +  LK E+  L+ ++  LK EL     E   L     
Sbjct: 245 KELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYE 303

Query: 62  GLKSELHGLKSELHGLKSELHGLK---SELHGLKSELHGLKSELHGLKSELHGLKSELHG 118
               EL  ++  L  L+ E++G++    EL   +  L  LK +L  L+  L  L+ E H 
Sbjct: 304 EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELE-ERHE 362

Query: 119 LKSELHGLKSELHGLKSELHGLKSE 143
           L  E    K EL  LK  L GL  E
Sbjct: 363 LYEEAKAKKEELERLKKRLTGLTPE 387

Length = 880

>gnl|CDD|219189 pfam06818, Fez1, Fez1

 Score = 35.6 bits (82), Expect = 0.004
 Identities = 33/130 (25%), Positives = 64/130 (49%)

Query: 8   KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL 67
           K +L   ++EL     E+  L+++L   +++L   + +L  L+  L     EL   ++EL
Sbjct: 16  KQQLKESQAELAQKAGEIVSLRAQLREARAQLRESEEQLQELQDALRTKTLELEVCENEL 75

Query: 68  HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK 127
              KSE   L+ +   L++EL  L+  L    + L  L +E    K++    ++ L  L+
Sbjct: 76  QRKKSEAELLREKAGRLEAELAELREALASCPAPLPVLLTESDEAKAQRQAGEAGLRELR 135

Query: 128 SELHGLKSEL 137
            ++  L++EL
Sbjct: 136 RQVERLRAEL 145

This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth. Note that some family members contain more than one copy of this region. Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	98.43
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	98.42
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.36
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	98.3
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.28
PRK09039	343	hypothetical protein; Validated	98.2
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	98.19
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.19
KOG0250|consensus	1074		98.12
PRK09039	343	hypothetical protein; Validated	98.04
KOG0933|consensus	1174		98.0
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.94
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.94
PRK11637	428	AmiB activator; Provisional	97.89
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.75
PRK03918	880	chromosome segregation protein; Provisional	97.72
PRK11637	428	AmiB activator; Provisional	97.68
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.65
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	97.65
PRK04778	569	septation ring formation regulator EzrA; Provision	97.64
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.61
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	97.6
KOG0161|consensus	1930		97.56
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.53
KOG0933|consensus	1174		97.51
KOG0161|consensus	1930		97.5
KOG0996|consensus	1293		97.47
KOG0996|consensus	1293		97.37
PRK04778	569	septation ring formation regulator EzrA; Provision	97.33
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	97.33
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.32
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	97.26
KOG0977|consensus	546		97.24
PRK04863	1486	mukB cell division protein MukB; Provisional	97.23
KOG0977|consensus	546		97.15
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	97.15
PRK04863	1486	mukB cell division protein MukB; Provisional	97.15
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	97.12
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	97.11
KOG4643|consensus	1195		97.11
KOG0978|consensus	698		97.07
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.06
KOG4674|consensus	1822		97.04
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.03
KOG0964|consensus	1200		97.03
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	96.98
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	96.95
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.9
KOG0964|consensus	1200		96.85
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	96.81
KOG0995|consensus	581		96.74
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	96.7
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.69
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.66
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	96.61
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	96.6
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	96.58
KOG0963|consensus	629		96.57
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	96.54
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.53
COG4372	499	Uncharacterized protein conserved in bacteria with	96.49
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.48
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.46
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	96.41
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.39
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	96.32
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.3
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	96.18
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	96.18
KOG0971|consensus	1243		96.16
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	96.13
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	96.11
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.11
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.08
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.01
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	96.0
KOG0976|consensus	1265		95.96
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.92
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	95.84
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	95.78
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	95.77
KOG0995|consensus	581		95.76
COG5185	622	HEC1 Protein involved in chromosome segregation, i	95.74
KOG0971|consensus	1243		95.69
KOG0999|consensus	772		95.63
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	95.52
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	95.5
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.47
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	95.44
KOG4673|consensus	961		95.33
KOG0018|consensus	1141		95.21
COG4372	499	Uncharacterized protein conserved in bacteria with	95.19
KOG0978|consensus	698		95.19
KOG0804|consensus	493		95.19
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	95.19
PRK10884	206	SH3 domain-containing protein; Provisional	95.15
KOG1003|consensus	205		95.01
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	94.99
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.84
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	94.78
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	94.67
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	94.66
KOG0979|consensus	1072		94.62
PRK15422	79	septal ring assembly protein ZapB; Provisional	94.54
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	94.51
COG2433	652	Uncharacterized conserved protein [Function unknow	94.5
KOG0999|consensus	772		94.49
KOG0946|consensus	970		94.46
COG4026	290	Uncharacterized protein containing TOPRIM domain,	94.39
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	94.39
KOG0239|consensus	670		94.29
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	94.22
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	94.12
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	94.0
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	93.88
KOG4360|consensus	596		93.87
PF02994	370	Transposase_22: L1 transposable element; InterPro:	93.83
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	93.7
PF10186	302	Atg14: UV radiation resistance protein and autopha	93.7
PRK11281	1113	hypothetical protein; Provisional	93.7
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	93.64
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	93.53
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	93.51
PF10186	302	Atg14: UV radiation resistance protein and autopha	93.51
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	93.31
KOG0994|consensus	1758		93.15
PRK11281	1113	hypothetical protein; Provisional	93.13
KOG0962|consensus	1294		92.94
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	92.92
KOG0243|consensus	1041		92.8
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	92.75
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	92.73
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	92.73
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	92.6
KOG4809|consensus	654		92.52
KOG0946|consensus	970		92.5
KOG0972|consensus	384		92.27
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	92.27
PF13514	1111	AAA_27: AAA domain	92.12
COG5185	622	HEC1 Protein involved in chromosome segregation, i	92.03
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	91.71
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	91.63
KOG4643|consensus	1195		91.59
KOG0994|consensus	1758		91.56
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	91.4
KOG1853|consensus	333		91.39
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	91.27
KOG4302|consensus	660		91.24
PRK03947	140	prefoldin subunit alpha; Reviewed	91.07
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	91.07
KOG0288|consensus	459		90.26
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	90.21
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	90.04
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	90.02
KOG2264|consensus	907		89.77
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	89.6
PF13166	712	AAA_13: AAA domain	89.41
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	89.08
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	88.89
KOG4603|consensus	201		88.64
COG4477	570	EzrA Negative regulator of septation ring formatio	88.07
KOG4809|consensus	654		87.83
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	87.51
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	87.51
KOG0963|consensus	629		87.5
KOG1962|consensus	216		87.28
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	87.25
PF07851	330	TMPIT: TMPIT-like protein; InterPro: IPR012926 A n	87.22
PRK09343	121	prefoldin subunit beta; Provisional	86.97
PF14817	632	HAUS5: HAUS augmin-like complex subunit 5	86.9
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	86.89
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	86.72
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	86.7
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	86.67
COG4477	570	EzrA Negative regulator of septation ring formatio	85.84
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	85.59
KOG0998|consensus	847		85.56
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	85.41
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	85.27
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	85.13
PRK02119	73	hypothetical protein; Provisional	85.05
KOG4302|consensus	660		85.0
KOG2751|consensus	447		85.0
PRK10803	263	tol-pal system protein YbgF; Provisional	84.77
PRK10803	263	tol-pal system protein YbgF; Provisional	84.42
PF06120	301	Phage_HK97_TLTM: Tail length tape measure protein;	84.04
KOG0288|consensus	459		84.04
KOG3385|consensus	118		83.93
PF10458	66	Val_tRNA-synt_C: Valyl tRNA synthetase tRNA bindin	83.89
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	83.64
KOG4673|consensus	961		83.58
KOG1899|consensus	861		83.38
KOG2991|consensus	330		83.22
PF15188	85	CCDC-167: Coiled-coil domain-containing protein 16	82.99
PF15294	278	Leu_zip: Leucine zipper	82.16
PRK10929	1109	putative mechanosensitive channel protein; Provisi	81.92
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	81.34
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	81.31
COG5283	1213	Phage-related tail protein [Function unknown]	81.28
PF06428	100	Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IP	81.2
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	80.72
KOG1853|consensus	333		80.38
PF13874	141	Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B	80.16
KOG0998|consensus	847		80.14

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.43  E-value=0.00014  Score=48.60  Aligned_cols=134  Identities=18%  Similarity=0.249  Sum_probs=65.0

Q ss_pred             HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHH---hHHh
Q psy5576           7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS---ELHG   83 (156)
Q Consensus         7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~   83 (156)
                      ++.+.+.+......+...+..++........++..+.       ..+..+..++..+...+......+.....   ....
T Consensus         5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~-------~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~   77 (143)
T PF12718_consen    5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQ-------KKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQ   77 (143)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Confidence            3344444444444444444444444444444444444       44444444444444444444333333322   1224


Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhh
Q psy5576          84 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLN  147 (156)
Q Consensus        84 ~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~  147 (156)
                      +...+..+...+......+.....++.........+...+..+..+.......++.+...|.-+
T Consensus        78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~  141 (143)
T PF12718_consen   78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA  141 (143)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            5555555555555555555555555555555555556666666666666666666665555433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=98.42  E-value=0.00012  Score=52.54  Aligned_cols=113  Identities=28%  Similarity=0.474  Sum_probs=49.0

Q ss_pred             HHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHH--hHHhhHHHH
Q psy5576          11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS--ELHGLKSEL   88 (156)
Q Consensus        11 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~   88 (156)
                      ++.+...+......+..+...+..+...+..+...+..++.++..++..+..+...+...+..+.....  ++..+..++
T Consensus        19 ~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~   98 (239)
T COG1579          19 KDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEI   98 (239)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            333444444444444444444455555555555555555555555555555555554444444422221  233333344


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhH
Q psy5576          89 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL  123 (156)
Q Consensus        89 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i  123 (156)
                      ..+......+..++..+...+..+..++..+...+
T Consensus        99 ~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~  133 (239)
T COG1579          99 QIAKERINSLEDELAELMEEIEKLEKEIEDLKERL  133 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44443333333333333333333333333333333

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.36  E-value=0.00034  Score=50.68  Aligned_cols=57  Identities=18%  Similarity=0.291  Sum_probs=24.3

Q ss_pred             HhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHH
Q psy5576          82 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH  138 (156)
Q Consensus        82 ~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~  138 (156)
                      ..+...+..+...+.........++.....|...++.+...+...+.....+...++
T Consensus       172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld  228 (237)
T PF00261_consen  172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD  228 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444444444444444444444444444444444444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=98.30  E-value=0.00028  Score=50.78  Aligned_cols=48  Identities=31%  Similarity=0.467  Sum_probs=21.4

Q ss_pred             HHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHH
Q psy5576          60 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS  107 (156)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~  107 (156)
                      +..+..+++.++.+...+..++..+..++..+...+..+...+..++.
T Consensus        91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~  138 (239)
T COG1579          91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK  138 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444444444444443333

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.28  E-value=0.00024  Score=61.72  Aligned_cols=46  Identities=30%  Similarity=0.552  Sum_probs=19.3

Q ss_pred             HhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhh
Q psy5576           8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL   53 (156)
Q Consensus         8 ~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   53 (156)
                      ..++..+...+..+...+..+...+..+...+..+...+..+...+
T Consensus       676 ~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~  721 (1179)
T TIGR02168       676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL  721 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444433333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK09039 hypothetical protein; Validated

Probab=98.20  E-value=0.00045  Score=52.68  Aligned_cols=61  Identities=16%  Similarity=0.198  Sum_probs=24.3

Q ss_pred             hHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhH
Q psy5576          73 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL  133 (156)
Q Consensus        73 ~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~  133 (156)
                      ++...+.......-.+..++.++..++..+..++..+...+.+....+..|..+...+...
T Consensus       124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333444444444444444444444444444444444444444333333

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.19  E-value=0.00056  Score=45.66  Aligned_cols=132  Identities=16%  Similarity=0.256  Sum_probs=75.4

Q ss_pred             HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhh
Q psy5576           5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL   84 (156)
Q Consensus         5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (156)
                      ++.....+.+...+..+.......+..+..+......+...+..+...+......+..........+    .+...+..+
T Consensus        10 d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E----~l~rriq~L   85 (143)
T PF12718_consen   10 DNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE----QLNRRIQLL   85 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH----HHHhhHHHH
Confidence            3444455555555555555555555555555555555555555555555555555444444333322    555555566


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576          85 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL  140 (156)
Q Consensus        85 ~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l  140 (156)
                      +.+++.....+......+.........+...+..+......+..++..+...+..+
T Consensus        86 Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~  141 (143)
T PF12718_consen   86 EEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA  141 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            66666666666666666666666666666666666666666666666666555443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.19  E-value=0.00099  Score=48.26  Aligned_cols=57  Identities=19%  Similarity=0.303  Sum_probs=21.3

Q ss_pred             HHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhH
Q psy5576          25 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL   81 (156)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   81 (156)
                      +..++..+..+..........+......+..+...+.........+...+..+..++
T Consensus        94 i~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el  150 (237)
T PF00261_consen   94 IEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEEL  150 (237)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Confidence            333333333333333333333333333333333333333333333333333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0250|consensus

Probab=98.12  E-value=0.00074  Score=57.29  Aligned_cols=58  Identities=19%  Similarity=0.443  Sum_probs=21.9

Q ss_pred             hHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhH
Q psy5576          10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL   67 (156)
Q Consensus        10 ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~   67 (156)
                      .++.....+..+...+.+.+.+++.+..+...-..++..+...+.........+...+
T Consensus       303 ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~  360 (1074)
T KOG0250|consen  303 KIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEI  360 (1074)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333344444333333333333333333333333333333333

>PRK09039 hypothetical protein; Validated

Probab=98.04  E-value=0.0013  Score=50.15  Aligned_cols=59  Identities=17%  Similarity=0.229  Sum_probs=23.2

Q ss_pred             hHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHH
Q psy5576          80 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH  138 (156)
Q Consensus        80 ~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~  138 (156)
                      ++........+....+..+..++..+..++..++..++..+....+....+.++...++
T Consensus       124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~  182 (343)
T PRK09039        124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN  182 (343)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333334444444444444444444444443344444444443333

>KOG0933|consensus

Probab=98.00  E-value=0.0012  Score=55.73  Aligned_cols=146  Identities=23%  Similarity=0.280  Sum_probs=99.9

Q ss_pred             hhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHH
Q psy5576           3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH   82 (156)
Q Consensus         3 ~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (156)
                      |-..+..+|..+...++.-...+......+..+.-+.+++...+...+..+..+...+..+..++..+...+........
T Consensus       788 rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~  867 (1174)
T KOG0933|consen  788 RLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVK  867 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Confidence            33455666666666666666677777777777777777777777777777777766666666666666666666666655


Q ss_pred             hhHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhh
Q psy5576          83 GLKSELHGLKSELHGLKSE-------LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNC  148 (156)
Q Consensus        83 ~~~~e~~~l~~~~~~~~~~-------~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~  148 (156)
                      ....++......+.....+       ......+.....-.+..+..++..+...-......++.+-..|+|+-
T Consensus       868 ~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~  940 (1174)
T KOG0933|consen  868 KAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG  940 (1174)
T ss_pred             HHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence            5555555555555444444       44455555566666777777778888888888888999999999986

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.94  E-value=0.0037  Score=47.40  Aligned_cols=18  Identities=28%  Similarity=0.246  Sum_probs=9.7

Q ss_pred             HHHhhhHhhhhhhhhHhh
Q psy5576         136 ELHGLKSELGLNCYLTYF  153 (156)
Q Consensus       136 ~~~~l~~~~~~~~~~~~~  153 (156)
                      ++..++..+..|+.++-+
T Consensus       277 Ev~~Lk~~~~~Le~~~gw  294 (325)
T PF08317_consen  277 EVKRLKAKVDALEKLTGW  294 (325)
T ss_pred             HHHHHHHHHHHHHHHHCc
Confidence            345555555555555543

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.94  E-value=0.004  Score=47.23  Aligned_cols=81  Identities=27%  Similarity=0.383  Sum_probs=39.8

Q ss_pred             HHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHh----HHHhHhhHHHHHHhhhH
Q psy5576          67 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG----LKSELHGLKSELHGLKS  142 (156)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~----l~~~~~~~~~~~~~l~~  142 (156)
                      +..+..++......+.....++.++..++..+...+..+..+...+..++.+++.....    -..++..+......++.
T Consensus       211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~  290 (325)
T PF08317_consen  211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEK  290 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444444444444444444433332    22456677777777777


Q ss_pred             hhhhh
Q psy5576         143 ELGLN  147 (156)
Q Consensus       143 ~~~~~  147 (156)
                      ..||.
T Consensus       291 ~~gw~  295 (325)
T PF08317_consen  291 LTGWK  295 (325)
T ss_pred             HHCcE
Confidence            77663

>PRK11637 AmiB activator; Provisional

Probab=97.89  E-value=0.0071  Score=47.57  Aligned_cols=61  Identities=10%  Similarity=0.237  Sum_probs=22.6

Q ss_pred             HhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHH
Q psy5576           8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH   68 (156)
Q Consensus         8 ~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~   68 (156)
                      +.+|..+..++..+...+..+...+..+...+..+...+..+..++..+..++..+..++.
T Consensus        53 ~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~  113 (428)
T PRK11637         53 QQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIA  113 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333333333333333333333333

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.75  E-value=0.0093  Score=44.82  Aligned_cols=38  Identities=29%  Similarity=0.398  Sum_probs=20.6

Q ss_pred             HhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhh
Q psy5576           8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSE   45 (156)
Q Consensus         8 ~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   45 (156)
                      +.++..|...+..+-..+..++..=..+...+..+...
T Consensus         3 K~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~   40 (312)
T PF00038_consen    3 KEELQSLNDRLASYIEKVRFLEQENKRLESEIEELREK   40 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence            44566666666666666666666655555555554444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK03918 chromosome segregation protein; Provisional

Probab=97.72  E-value=0.0085  Score=51.15  Aligned_cols=6  Identities=17%  Similarity=0.218  Sum_probs=2.1

Q ss_pred             HHHHHH
Q psy5576         105 LKSELH  110 (156)
Q Consensus       105 l~~~l~  110 (156)
                      +...+.
T Consensus       685 l~~~i~  690 (880)
T PRK03918        685 LEKRRE  690 (880)
T ss_pred             HHHHHH
Confidence            333333

>PRK11637 AmiB activator; Provisional

Probab=97.68  E-value=0.017  Score=45.52  Aligned_cols=69  Identities=12%  Similarity=0.269  Sum_probs=28.1

Q ss_pred             hhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHH
Q psy5576           9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL   77 (156)
Q Consensus         9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   77 (156)
                      .+++.+..++......+......+..+..++..+..++..+...+..+..++..+..++..+..++..+
T Consensus        47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~  115 (428)
T PRK11637         47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKL  115 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444444444444444444444444444444433333

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.65  E-value=0.019  Score=48.23  Aligned_cols=23  Identities=48%  Similarity=0.603  Sum_probs=8.6

Q ss_pred             HHhHHHHHHHHHHhHHhHHHHHH
Q psy5576          11 LDGLKSELHGLKSELHGLKSELH   33 (156)
Q Consensus        11 i~~l~~~l~~~~~~~~~~~~~~~   33 (156)
                      ++.+..++......+..+...+.
T Consensus       289 ~d~~~~eL~rk~~E~~~~qt~l~  311 (775)
T PF10174_consen  289 MDRLKLELSRKKSELEALQTRLE  311 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>smart00787 Spc7 Spc7 kinetochore protein

Probab=97.65  E-value=0.014  Score=43.95  Aligned_cols=18  Identities=39%  Similarity=0.455  Sum_probs=7.9

Q ss_pred             hHhhHHHHHHhhhHhhhh
Q psy5576         129 ELHGLKSELHGLKSELGL  146 (156)
Q Consensus       129 ~~~~~~~~~~~l~~~~~~  146 (156)
                      ++..+......++..+||
T Consensus       272 Ei~~Lk~~~~~Le~l~g~  289 (312)
T smart00787      272 EIEKLKEQLKLLQSLTGW  289 (312)
T ss_pred             HHHHHHHHHHHHHHHhCC
Confidence            334444444444444444

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.64  E-value=0.015  Score=47.50  Aligned_cols=106  Identities=20%  Similarity=0.298  Sum_probs=59.6

Q ss_pred             HHhhHHhHHHhhhhhHhhHHhHHHh----------HHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5576          42 LKSELHGLKSELHGLKSELHGLKSE----------LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG  111 (156)
Q Consensus        42 ~~~~l~~~~~~~~~l~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~  111 (156)
                      +...+..+......+..++..+...          ...+..++..+...+..+...+.......+.+......+..++..
T Consensus       315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee  394 (569)
T PRK04778        315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE  394 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444          445555555555555555555555555556666666666666666


Q ss_pred             HHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhh
Q psy5576         112 LKSELHGLKSELHGLKSELHGLKSELHGLKSELGLN  147 (156)
Q Consensus       112 l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~  147 (156)
                      +......+...+..+...-..+...+..+...+.-+
T Consensus       395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~i  430 (569)
T PRK04778        395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEI  430 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666666655554433

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.61  E-value=0.01  Score=41.17  Aligned_cols=99  Identities=26%  Similarity=0.304  Sum_probs=41.1

Q ss_pred             HhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5576          43 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE  122 (156)
Q Consensus        43 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~  122 (156)
                      .+++.+++.-...++.....+-.+...++.+...+-..+..++.+...+......+......+......|..++-..+.-
T Consensus        66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l  145 (193)
T PF14662_consen   66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESL  145 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444444444444444444444333333


Q ss_pred             HHhHHHhHhhHHHHHHhhh
Q psy5576         123 LHGLKSELHGLKSELHGLK  141 (156)
Q Consensus       123 i~~l~~~~~~~~~~~~~l~  141 (156)
                      +.....-+.+....+..+.
T Consensus       146 ~~~~da~l~e~t~~i~eL~  164 (193)
T PF14662_consen  146 ICQRDAILSERTQQIEELK  164 (193)
T ss_pred             HHHHHHHHHHHHhhHHHHH
Confidence            3333333333344444444

>smart00787 Spc7 Spc7 kinetochore protein

Probab=97.60  E-value=0.017  Score=43.54  Aligned_cols=21  Identities=33%  Similarity=0.311  Sum_probs=14.7

Q ss_pred             HHHHhhhHhhhhhhhhHhhhc
Q psy5576         135 SELHGLKSELGLNCYLTYFLF  155 (156)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~  155 (156)
                      .++..+...+..+..++.+-|
T Consensus       271 ~Ei~~Lk~~~~~Le~l~g~~~  291 (312)
T smart00787      271 KEIEKLKEQLKLLQSLTGWKI  291 (312)
T ss_pred             HHHHHHHHHHHHHHHHhCCee
Confidence            456777778888877776544

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0161|consensus

Probab=97.56  E-value=0.023  Score=51.84  Aligned_cols=33  Identities=18%  Similarity=0.339  Sum_probs=12.6

Q ss_pred             HHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHH
Q psy5576          11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLK   43 (156)
Q Consensus        11 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   43 (156)
                      +.++...++....+...+......+...++.+.
T Consensus       994 ~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le 1026 (1930)
T KOG0161|consen  994 IRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLE 1026 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333

>TIGR00606 rad50 rad50

Probab=97.53  E-value=0.024  Score=50.61  Aligned_cols=47  Identities=23%  Similarity=0.280  Sum_probs=26.3

Q ss_pred             hhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhH
Q psy5576           3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL   49 (156)
Q Consensus         3 ~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   49 (156)
                      +|..+..+++.+...+..+...+..+...+..+...+..+...+..+
T Consensus       882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  928 (1311)
T TIGR00606       882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL  928 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            34555566666666666665555555555555555555555444443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0933|consensus

Probab=97.51  E-value=0.036  Score=47.23  Aligned_cols=132  Identities=19%  Similarity=0.319  Sum_probs=56.1

Q ss_pred             hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhH-----------HhhHHhHHHhhhhhHhhHHhHHHhHHhhHH
Q psy5576           4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGL-----------KSELHGLKSELHGLKSELHGLKSELHGLKS   72 (156)
Q Consensus         4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~   72 (156)
                      ...+..++.++..+|.+....+..+..++..++......           ...+........+.......-..+++.+..
T Consensus       743 ~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~l  822 (1174)
T KOG0933|consen  743 LKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQL  822 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666666665555555554444333222           222222222222222223333333333333


Q ss_pred             hHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHH
Q psy5576          73 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS  135 (156)
Q Consensus        73 ~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~  135 (156)
                      +.+.+..++...+..+.++...++.+..++..+...+............++......+.....
T Consensus       823 E~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt  885 (1174)
T KOG0933|consen  823 EHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDT  885 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhH
Confidence            333334444444444444444444444444444444444444444444444444444433333

>KOG0161|consensus

Probab=97.50  E-value=0.029  Score=51.22  Aligned_cols=122  Identities=23%  Similarity=0.353  Sum_probs=56.1

Q ss_pred             HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhh
Q psy5576           5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL   84 (156)
Q Consensus         5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (156)
                      ..+..++.++..++...+.....++.+...+..++..+...+.+....+..+..+.......+..+..++..+...+..+
T Consensus       904 ~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL  983 (1930)
T KOG0161|consen  904 QELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKL  983 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555444444444444444444455555555554444444444444444555555555444444444444


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhH
Q psy5576          85 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL  126 (156)
Q Consensus        85 ~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l  126 (156)
                      ..+...+...+..+...+...+.+...+......+...+.++
T Consensus       984 ~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~l 1025 (1930)
T KOG0161|consen  984 SKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDL 1025 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444433333333333333333

>KOG0996|consensus

Probab=97.47  E-value=0.023  Score=49.07  Aligned_cols=9  Identities=33%  Similarity=0.660  Sum_probs=3.3

Q ss_pred             HHhHHHHHH
Q psy5576          11 LDGLKSELH   19 (156)
Q Consensus        11 i~~l~~~l~   19 (156)
                      |+.+..+++
T Consensus       867 ie~l~kE~e  875 (1293)
T KOG0996|consen  867 IEELKKEVE  875 (1293)
T ss_pred             HHHHHHHHH
Confidence            333333333

>KOG0996|consensus

Probab=97.37  E-value=0.05  Score=47.10  Aligned_cols=49  Identities=31%  Similarity=0.314  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhh
Q psy5576         102 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYL  150 (156)
Q Consensus       102 ~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~  150 (156)
                      +.+....+..+..+...+......+..++.++...++.......+|..|
T Consensus       558 ~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al  606 (1293)
T KOG0996|consen  558 LKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDAL  606 (1293)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            3333333333333333333333444444444444444444444444433

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.33  E-value=0.059  Score=44.06  Aligned_cols=7  Identities=29%  Similarity=0.330  Sum_probs=2.5

Q ss_pred             HHhHHhh
Q psy5576          39 LHGLKSE   45 (156)
Q Consensus        39 ~~~~~~~   45 (156)
                      +..+...
T Consensus       319 l~~~~e~  325 (569)
T PRK04778        319 LEHAKEQ  325 (569)
T ss_pred             HHHHHHH
Confidence            3333333

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=97.33  E-value=0.053  Score=45.19  Aligned_cols=83  Identities=24%  Similarity=0.292  Sum_probs=45.9

Q ss_pred             HHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHH
Q psy5576          16 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL   95 (156)
Q Consensus        16 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~   95 (156)
                      ..|.+++..+..+...+.....+.+.+......+......++.+...++.++..++..-.++-..+..++.+.-.+...+
T Consensus        34 ~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqv  113 (717)
T PF09730_consen   34 QRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQV  113 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            34444444444455555555555555555555555555556666666666666666665555555565555555555554


Q ss_pred             HhH
Q psy5576          96 HGL   98 (156)
Q Consensus        96 ~~~   98 (156)
                      +.+
T Consensus       114 s~L  116 (717)
T PF09730_consen  114 SVL  116 (717)
T ss_pred             HHH
Confidence            433

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.32  E-value=0.026  Score=39.21  Aligned_cols=7  Identities=14%  Similarity=0.544  Sum_probs=2.5

Q ss_pred             HHhHHHH
Q psy5576          11 LDGLKSE   17 (156)
Q Consensus        11 i~~l~~~   17 (156)
                      +..|..+
T Consensus        45 ~~~L~~q   51 (193)
T PF14662_consen   45 ITDLRKQ   51 (193)
T ss_pred             HHHHHHH
Confidence            3333333

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=97.26  E-value=0.04  Score=40.24  Aligned_cols=111  Identities=26%  Similarity=0.337  Sum_probs=64.0

Q ss_pred             hHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHH
Q psy5576          10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH   89 (156)
Q Consensus        10 ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~   89 (156)
                      .|.+++.+++.+.+.-+.-.=.++.+...+..-......-...+..+..+...+...+.+++.....+..++..-+..+.
T Consensus        19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~   98 (307)
T PF10481_consen   19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVN   98 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHH
Confidence            45555555555555555555555555555555555555556666666666666666666666666666666666666666


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Q psy5576          90 GLKSELHGLKSELHGLKSELHGLKSELHGLK  120 (156)
Q Consensus        90 ~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~  120 (156)
                      -+...+......+..++.++..+..++...+
T Consensus        99 ~lEgQl~s~Kkqie~Leqelkr~KsELErsQ  129 (307)
T PF10481_consen   99 FLEGQLNSCKKQIEKLEQELKRCKSELERSQ  129 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6665555555555555555554444444333

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0977|consensus

Probab=97.24  E-value=0.056  Score=43.54  Aligned_cols=41  Identities=22%  Similarity=0.338  Sum_probs=32.5

Q ss_pred             hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHh
Q psy5576           4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKS   44 (156)
Q Consensus         4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   44 (156)
                      |..-|.+|..|...+..+-..+..++.+=..+..++..+..
T Consensus        37 R~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~   77 (546)
T KOG0977|consen   37 REREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRG   77 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56678899999999999888888888887777777766654

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.23  E-value=0.071  Score=48.11  Aligned_cols=46  Identities=13%  Similarity=0.122  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhh
Q psy5576         105 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYL  150 (156)
Q Consensus       105 l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~  150 (156)
                      +..-+....+.+......+..++.++......+..+...+..++.+
T Consensus       440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~  485 (1486)
T PRK04863        440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKI  485 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455666666666666777777777777777777766666554

>KOG0977|consensus

Probab=97.15  E-value=0.094  Score=42.28  Aligned_cols=99  Identities=29%  Similarity=0.394  Sum_probs=44.9

Q ss_pred             HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHH
Q psy5576           7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS   86 (156)
Q Consensus         7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |..++..+..-+++.......++.++..+..++..+...+.............+......+..++.++..++..+..+..
T Consensus        90 ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~  169 (546)
T KOG0977|consen   90 YEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALED  169 (546)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence            34444445555555544455555555555555554444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHhHHHHHHHH
Q psy5576          87 ELHGLKSELHGLKSELHGL  105 (156)
Q Consensus        87 e~~~l~~~~~~~~~~~~~l  105 (156)
                      +...+..+...+...+..+
T Consensus       170 e~~~Lk~en~rl~~~l~~~  188 (546)
T KOG0977|consen  170 ELKRLKAENSRLREELARA  188 (546)
T ss_pred             HHHHHHHHhhhhHHHHHHH
Confidence            4444444444433333333

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=97.15  E-value=0.07  Score=41.07  Aligned_cols=133  Identities=21%  Similarity=0.294  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHH
Q psy5576          14 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS   93 (156)
Q Consensus        14 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~   93 (156)
                      .+.-++.+..-...+...+...+..+..+...+...-.   .+...-..+..++..+-.+......++............
T Consensus       218 WR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~le---kI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~  294 (359)
T PF10498_consen  218 WRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLE---KIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASE  294 (359)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33444444444444444444444444444444432222   222233333444555555555555556666666666666


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHhHHHhHH------hHHHhHhhHHHHHHhhhHhhhhhhh
Q psy5576          94 ELHGLKSELHGLKSELHGLKSELHGLKSELH------GLKSELHGLKSELHGLKSELGLNCY  149 (156)
Q Consensus        94 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~------~l~~~~~~~~~~~~~l~~~~~~~~~  149 (156)
                      .+......+..+..++..++.++++-...+.      .++.-+..++.++..+.-++|++..
T Consensus       295 ~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGVleh  356 (359)
T PF10498_consen  295 GVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGVLEH  356 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhheehh
Confidence            6666666666666666666666666654443      5667778888888888888887754

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.15  E-value=0.15  Score=46.07  Aligned_cols=61  Identities=15%  Similarity=0.182  Sum_probs=23.0

Q ss_pred             hHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhH
Q psy5576          73 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL  133 (156)
Q Consensus        73 ~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~  133 (156)
                      .+..+...+......+..+...+......+..++.++..+..++......+..+..+....
T Consensus       356 ~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~  416 (1486)
T PRK04863        356 DLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQY  416 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333333333333333333333333

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=97.12  E-value=0.033  Score=36.62  Aligned_cols=84  Identities=27%  Similarity=0.339  Sum_probs=36.5

Q ss_pred             hhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHH
Q psy5576           9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL   88 (156)
Q Consensus         9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~   88 (156)
                      .++..+..++..+..........+..+..++..........+..+..--..-......+..++.+...+...+..+..+.
T Consensus         3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~   82 (132)
T PF07926_consen    3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEA   82 (132)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555554444444444444444444444444444444333322333333344444444444444444444444


Q ss_pred             HHHH
Q psy5576          89 HGLK   92 (156)
Q Consensus        89 ~~l~   92 (156)
                      +...
T Consensus        83 ~~a~   86 (132)
T PF07926_consen   83 ESAK   86 (132)
T ss_pred             HHHH
Confidence            4333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=97.11  E-value=0.0077  Score=42.29  Aligned_cols=104  Identities=29%  Similarity=0.361  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Q psy5576          29 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE  108 (156)
Q Consensus        29 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~  108 (156)
                      ...+..++.++..+...-..+..++..+...+..+...+......+..+......+..++..+...+......+..+..+
T Consensus        73 e~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE  152 (194)
T PF08614_consen   73 EQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDE  152 (194)
T ss_dssp             -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHhHHHhHHhHHHhHhh
Q psy5576         109 LHGLKSELHGLKSELHGLKSELHG  132 (156)
Q Consensus       109 l~~l~~~~~~~~~~i~~l~~~~~~  132 (156)
                      +..|.-+.+.++..+..+..+-..
T Consensus       153 ~~~L~l~~~~~e~k~~~l~~En~~  176 (194)
T PF08614_consen  153 LQALQLQLNMLEEKLRKLEEENRE  176 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG4643|consensus

Probab=97.11  E-value=0.15  Score=43.76  Aligned_cols=142  Identities=22%  Similarity=0.200  Sum_probs=78.3

Q ss_pred             HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhh---HhhHHhHHHhHHhhHHhHHHHHHhHHh
Q psy5576           7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL---KSELHGLKSELHGLKSELHGLKSELHG   83 (156)
Q Consensus         7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (156)
                      |..+++.|...+..+.....+++.....+..+.+.+..........+..-   ......+.....+.......+...+.+
T Consensus       413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ikn  492 (1195)
T KOG4643|consen  413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKN  492 (1195)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666666666666666666666665555444433322   233444444444455555555555555


Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhh
Q psy5576          84 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNC  148 (156)
Q Consensus        84 ~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~  148 (156)
                      +..-++.....++.+......+..++..+..+...+......+...+..++++-..+-.++-.||
T Consensus       493 lnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk  557 (1195)
T KOG4643|consen  493 LNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLK  557 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555544444

>KOG0978|consensus

Probab=97.07  E-value=0.097  Score=43.39  Aligned_cols=129  Identities=26%  Similarity=0.307  Sum_probs=65.9

Q ss_pred             hhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHH
Q psy5576           3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH   82 (156)
Q Consensus         3 ~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (156)
                      .+.........|..+...+...+..+......+...+..+......+......+..++..+...+...............
T Consensus       490 e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~  569 (698)
T KOG0978|consen  490 ERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLE  569 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHh
Q psy5576          83 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH  131 (156)
Q Consensus        83 ~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~  131 (156)
                      .+..+.+.....+.+++....+....+..+......++.++..+...+.
T Consensus       570 ~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle  618 (698)
T KOG0978|consen  570 DLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLE  618 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555554444444444444444444444444333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.06  E-value=0.14  Score=42.83  Aligned_cols=13  Identities=23%  Similarity=0.595  Sum_probs=5.3

Q ss_pred             HhhHHhHHHHHHH
Q psy5576           8 KSELDGLKSELHG   20 (156)
Q Consensus         8 ~~ei~~l~~~l~~   20 (156)
                      ..++..|+.++..
T Consensus       424 E~dvkkLraeLq~  436 (697)
T PF09726_consen  424 EADVKKLRAELQS  436 (697)
T ss_pred             HHHHHHHHHHHHh
Confidence            3344444444333

; GO: 0016021 integral to membrane

>KOG4674|consensus

Probab=97.04  E-value=0.2  Score=45.66  Aligned_cols=131  Identities=29%  Similarity=0.334  Sum_probs=68.1

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHH
Q psy5576          15 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE   94 (156)
Q Consensus        15 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~   94 (156)
                      .+++..+...+..+..++..+....-++...+......-...+....++.++..-+......+..++.....++..+..+
T Consensus       135 ~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re  214 (1822)
T KOG4674|consen  135 KAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRRE  214 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence            33344444444444444444444444444444433333333444555555555556666666666666666665555555


Q ss_pred             ----HHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhh
Q psy5576          95 ----LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELG  145 (156)
Q Consensus        95 ----~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~  145 (156)
                          +..+...+..+...+..+...+..+......+...+......+..+...++
T Consensus       215 ~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~  269 (1822)
T KOG4674|consen  215 HSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAE  269 (1822)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence                555555566665666666666665655555555555555555555444443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.03  E-value=0.084  Score=39.67  Aligned_cols=119  Identities=26%  Similarity=0.336  Sum_probs=61.8

Q ss_pred             hHHhHHHHHHHHHHhHHhHHHHH-HHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHH
Q psy5576          10 ELDGLKSELHGLKSELHGLKSEL-HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL   88 (156)
Q Consensus        10 ei~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~   88 (156)
                      .+..|..+-..+..++..+.... .............+..++..+..+..+...+..++.++...+..+...+.......
T Consensus        19 kVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~   98 (312)
T PF00038_consen   19 KVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAER   98 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444331 11222233445556666666666666666666666666666666666666555556


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHH
Q psy5576          89 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS  128 (156)
Q Consensus        89 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~  128 (156)
                      ..+...+..+...+.........++.++..+..++..+..
T Consensus        99 ~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~  138 (312)
T PF00038_consen   99 KDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ  138 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Confidence            6666666666666665555555666666666655555443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0964|consensus

Probab=97.03  E-value=0.18  Score=43.25  Aligned_cols=102  Identities=23%  Similarity=0.381  Sum_probs=55.6

Q ss_pred             hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHh
Q psy5576           4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG   83 (156)
Q Consensus         4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (156)
                      |..+-..++....++.++...+..+...+....++++.+.........++.........+..++..+..+...+...+.-
T Consensus       666 rLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~  745 (1200)
T KOG0964|consen  666 RLELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEP  745 (1200)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH
Confidence            33444455555556666666666666666666566666655555555555555555555555555555555555555444


Q ss_pred             hHHHHHHHHHHHHhHHHHHHHH
Q psy5576          84 LKSELHGLKSELHGLKSELHGL  105 (156)
Q Consensus        84 ~~~e~~~l~~~~~~~~~~~~~l  105 (156)
                      ....+..+...+..+......+
T Consensus       746 k~~~Le~i~~~l~~~~~~~~~~  767 (1200)
T KOG0964|consen  746 KGKELEEIKTSLHKLESQSNYF  767 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhH
Confidence            4444444444444444333333

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=96.98  E-value=0.09  Score=39.08  Aligned_cols=72  Identities=19%  Similarity=0.368  Sum_probs=42.9

Q ss_pred             hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHH
Q psy5576           4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH   75 (156)
Q Consensus         4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   75 (156)
                      |..+..++..+...-+.+..++..+......+....+.+...+..++....++...+..+...+..+.....
T Consensus        29 R~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~  100 (294)
T COG1340          29 RDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN  100 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            455666666666666666666666666666666666666666666666555555555555554444444443

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.95  E-value=0.033  Score=39.09  Aligned_cols=65  Identities=29%  Similarity=0.386  Sum_probs=16.3

Q ss_pred             HhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5576          57 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS  121 (156)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~  121 (156)
                      ...+..+...+..+...+......+..+..++..+...+..+...+......+..+.+++..++-
T Consensus        94 ~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l  158 (194)
T PF08614_consen   94 AQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQL  158 (194)
T ss_dssp             --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333333333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.90  E-value=0.11  Score=38.89  Aligned_cols=85  Identities=24%  Similarity=0.300  Sum_probs=37.6

Q ss_pred             hHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHH
Q psy5576          59 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH  138 (156)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~  138 (156)
                      ++..+..++..-..+......++..+..++..+....+..-.+...+...+.........+..++.+++.+..+...-+.
T Consensus       214 qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~  293 (306)
T PF04849_consen  214 QIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLH  293 (306)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333334444444444444444444444444444444444444555555555555555444444


Q ss_pred             hhhHh
Q psy5576         139 GLKSE  143 (156)
Q Consensus       139 ~l~~~  143 (156)
                      ..+.+
T Consensus       294 EaQEE  298 (306)
T PF04849_consen  294 EAQEE  298 (306)
T ss_pred             HHHHH
Confidence            44443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0964|consensus

Probab=96.85  E-value=0.16  Score=43.53  Aligned_cols=88  Identities=22%  Similarity=0.336  Sum_probs=38.9

Q ss_pred             hhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHH
Q psy5576           9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL   88 (156)
Q Consensus         9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~   88 (156)
                      +++.+...++..+.......-..-.++..++.........+..++..+...+..+..+.+++..+....-.....++-++
T Consensus       230 rEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~  309 (1200)
T KOG0964|consen  230 RELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKI  309 (1200)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            34444444444444444444444444444444444444444444444444444444444444444333333333344444


Q ss_pred             HHHHHHHH
Q psy5576          89 HGLKSELH   96 (156)
Q Consensus        89 ~~l~~~~~   96 (156)
                      .++..++.
T Consensus       310 kdlq~~i~  317 (1200)
T KOG0964|consen  310 KDLQDQIT  317 (1200)
T ss_pred             HHHHHHhh
Confidence            44444443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=96.81  E-value=0.34  Score=43.21  Aligned_cols=73  Identities=23%  Similarity=0.383  Sum_probs=42.4

Q ss_pred             HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHH
Q psy5576           5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL   77 (156)
Q Consensus         5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   77 (156)
                      .++..++..+...+.........++..+......+......+......+......+..+......++.++...
T Consensus       603 e~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  675 (1201)
T PF12128_consen  603 EELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEA  675 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666666666666666666666666666555555555555555555555555555555444433

>KOG0995|consensus

Probab=96.74  E-value=0.22  Score=40.13  Aligned_cols=49  Identities=24%  Similarity=0.371  Sum_probs=19.1

Q ss_pred             hhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHH
Q psy5576          44 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK   92 (156)
Q Consensus        44 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~   92 (156)
                      ..+...+.-+..+......+...+..+..++.....+++.+..+.+++.
T Consensus       273 ~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk  321 (581)
T KOG0995|consen  273 DDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELK  321 (581)
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333344444444444444444444444333

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=96.70  E-value=0.31  Score=41.21  Aligned_cols=18  Identities=11%  Similarity=0.180  Sum_probs=8.0

Q ss_pred             hHhhHHHHHHhhhHhhhh
Q psy5576         129 ELHGLKSELHGLKSELGL  146 (156)
Q Consensus       129 ~~~~~~~~~~~l~~~~~~  146 (156)
                      ++......+..++..|..
T Consensus       734 EiaaAA~KLAECQeTI~s  751 (769)
T PF05911_consen  734 EIAAAAEKLAECQETIAS  751 (769)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444444444444433

The function of this family is unknown.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.69  E-value=0.12  Score=36.32  Aligned_cols=39  Identities=26%  Similarity=0.317  Sum_probs=16.0

Q ss_pred             HhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHH
Q psy5576          57 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL   95 (156)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~   95 (156)
                      ..++..+...+.............+...+.++..+...+
T Consensus        67 ~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l  105 (194)
T PF15619_consen   67 NEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDEL  105 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444443333333

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.66  E-value=0.17  Score=37.86  Aligned_cols=41  Identities=22%  Similarity=0.281  Sum_probs=15.5

Q ss_pred             HHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHH
Q psy5576          46 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS   86 (156)
Q Consensus        46 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      +.....++..+..++..-..+..+...++.++..++-.++.
T Consensus       208 L~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~  248 (306)
T PF04849_consen  208 LSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQ  248 (306)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334333333333333333333333333333333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=96.61  E-value=0.14  Score=36.03  Aligned_cols=96  Identities=30%  Similarity=0.409  Sum_probs=58.5

Q ss_pred             hhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHH
Q psy5576           9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL   88 (156)
Q Consensus         9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~   88 (156)
                      .+|.-|+.++.+....+..--..+-.++..+......+......+..+...+..-..++.....++.+...+..-+...+
T Consensus        10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl   89 (202)
T PF06818_consen   10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKL   89 (202)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhh
Confidence            45666666666666666666666666666666666666666666666666555555566666666665555555555555


Q ss_pred             HHHHHHHHhHHHHHHH
Q psy5576          89 HGLKSELHGLKSELHG  104 (156)
Q Consensus        89 ~~l~~~~~~~~~~~~~  104 (156)
                      ..+..++..+......
T Consensus        90 ~~le~El~~Lr~~l~~  105 (202)
T PF06818_consen   90 GQLEAELAELREELAC  105 (202)
T ss_pred             hhhHHHHHHHHHHHHh
Confidence            5555555544444444

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.60  E-value=0.17  Score=37.09  Aligned_cols=14  Identities=14%  Similarity=0.551  Sum_probs=4.9

Q ss_pred             HHhHHHHHHHHHHh
Q psy5576          11 LDGLKSELHGLKSE   24 (156)
Q Consensus        11 i~~l~~~l~~~~~~   24 (156)
                      |+.|-.++.++..+
T Consensus        54 i~~L~~qi~~~~~k   67 (265)
T COG3883          54 IESLDNQIEEIQSK   67 (265)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=96.58  E-value=0.0051  Score=46.17  Aligned_cols=126  Identities=29%  Similarity=0.443  Sum_probs=23.1

Q ss_pred             HHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHh
Q psy5576          18 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG   97 (156)
Q Consensus        18 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~   97 (156)
                      +..+.+.+..++.....+...+..+...+.++...+..+...+......+..+...+..+...+..+...+..+...+..
T Consensus        30 Ls~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~  109 (326)
T PF04582_consen   30 LSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSD  109 (326)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhh
Confidence            33334444444444444444444444444555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHh
Q psy5576          98 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE  143 (156)
Q Consensus        98 ~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~  143 (156)
                      ....+..+...+..+.-.+..++..+..+.-.+.++...+..++..
T Consensus       110 h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~  155 (326)
T PF04582_consen  110 HSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESG  155 (326)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence            5555555555566666666666666666666666666666665554

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>KOG0963|consensus

Probab=96.57  E-value=0.32  Score=39.67  Aligned_cols=47  Identities=30%  Similarity=0.424  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHh
Q psy5576         105 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTY  152 (156)
Q Consensus       105 l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  152 (156)
                      ....+..|+.+.......++++...+... ...+.+..+..+|+.|-+
T Consensus       315 ~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~ief  361 (629)
T KOG0963|consen  315 HKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKAIEF  361 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHhhc
Confidence            33344455555555555555555544443 456667777777777643

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=96.54  E-value=0.0059  Score=45.84  Aligned_cols=122  Identities=30%  Similarity=0.453  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHH
Q psy5576          14 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS   93 (156)
Q Consensus        14 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~   93 (156)
                      +...+..++..+..+...+..+...+..+...+..+...+.+....+..+...+..+...+..+...+..+..-+.....
T Consensus        33 I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~s  112 (326)
T PF04582_consen   33 IRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSS  112 (326)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhh
Confidence            33444444444444444444444444444444444444555555555555555555555555555555555555555555


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHH
Q psy5576          94 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS  135 (156)
Q Consensus        94 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~  135 (156)
                      .+..++..+..+...+..|+..+....-.|..++.++..++.
T Consensus       113 sIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs  154 (326)
T PF04582_consen  113 SISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALES  154 (326)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhc
Confidence            555555555555555555666666666666666665555553

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.53  E-value=0.35  Score=39.76  Aligned_cols=53  Identities=34%  Similarity=0.503  Sum_probs=27.4

Q ss_pred             HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhh
Q psy5576           7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE   59 (156)
Q Consensus         7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~   59 (156)
                      -..++..+..+++.+...+..+...+..+...+..+...+.........+..+
T Consensus       326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~  378 (594)
T PF05667_consen  326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEE  378 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555544444444444333

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.49  E-value=0.27  Score=37.94  Aligned_cols=43  Identities=28%  Similarity=0.438  Sum_probs=17.7

Q ss_pred             HHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhh
Q psy5576          11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL   53 (156)
Q Consensus        11 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   53 (156)
                      ++++..++..+..++..........+.+-.....++...+.+.
T Consensus        76 lddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~  118 (499)
T COG4372          76 LDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQER  118 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444443333333333333333

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.48  E-value=0.39  Score=39.71  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=12.9

Q ss_pred             HHHhhHHhHHHHHHHHHHhHHhHH
Q psy5576           6 KRKSELDGLKSELHGLKSELHGLK   29 (156)
Q Consensus         6 ~~~~ei~~l~~~l~~~~~~~~~~~   29 (156)
                      .+..++..|..++..+..++....
T Consensus        84 ~Lq~E~~~L~kElE~L~~qlqaqv  107 (617)
T PF15070_consen   84 QLQAEAEHLRKELESLEEQLQAQV  107 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555556665555555554443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.46  E-value=0.44  Score=39.97  Aligned_cols=78  Identities=23%  Similarity=0.286  Sum_probs=44.0

Q ss_pred             hhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHh
Q psy5576           3 RKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE   80 (156)
Q Consensus         3 ~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (156)
                      +.+.|...|.+|..++..+...+.....+.+.+......+......+..+...+..++..+...-.++-.+...+..+
T Consensus        28 ~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeE  105 (717)
T PF09730_consen   28 KEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEE  105 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            345566666666666666666666666666666655555555555555555555555555555444444444444443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=96.41  E-value=0.24  Score=36.37  Aligned_cols=33  Identities=33%  Similarity=0.465  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHH
Q psy5576         106 KSELHGLKSELHGLKSELHGLKSELHGLKSELH  138 (156)
Q Consensus       106 ~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~  138 (156)
                      +..+.-++.++......|+.+..++..+..+++
T Consensus        94 e~qv~~lEgQl~s~Kkqie~Leqelkr~KsELE  126 (307)
T PF10481_consen   94 ESQVNFLEGQLNSCKKQIEKLEQELKRCKSELE  126 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444444444443333

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.39  E-value=0.34  Score=37.93  Aligned_cols=71  Identities=18%  Similarity=0.367  Sum_probs=41.2

Q ss_pred             hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhH
Q psy5576           4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL   74 (156)
Q Consensus         4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~   74 (156)
                      .+....+|..++..+.........++..+..++.++..+..++..+...+..+...+..+...+..+..+.
T Consensus        40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~  110 (420)
T COG4942          40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE  110 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            44555666666666666666666666666666666666555555555555555555555555555554444

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=96.32  E-value=0.29  Score=36.45  Aligned_cols=46  Identities=17%  Similarity=0.388  Sum_probs=19.4

Q ss_pred             hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhH
Q psy5576           4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL   49 (156)
Q Consensus         4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   49 (156)
                      |+.++..+..+...+..+...-..+...+..++.....+...+..+
T Consensus        43 Rdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL   88 (294)
T COG1340          43 RDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQEL   88 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444443333333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.30  E-value=0.55  Score=39.44  Aligned_cols=27  Identities=33%  Similarity=0.395  Sum_probs=11.3

Q ss_pred             HHhhHHhHHHHHHHHHHhHHhHHHHHH
Q psy5576           7 RKSELDGLKSELHGLKSELHGLKSELH   33 (156)
Q Consensus         7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~   33 (156)
                      ++.+|..++.+.+.++.++..+.....
T Consensus       458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq  484 (697)
T PF09726_consen  458 LKSELSQLRQENEQLQNKLQNLVQARQ  484 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444433333

; GO: 0016021 integral to membrane

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=96.18  E-value=0.67  Score=39.29  Aligned_cols=23  Identities=13%  Similarity=0.114  Sum_probs=9.0

Q ss_pred             hHHHhHhhHHHHHHhhhHhhhhh
Q psy5576         125 GLKSELHGLKSELHGLKSELGLN  147 (156)
Q Consensus       125 ~l~~~~~~~~~~~~~l~~~~~~~  147 (156)
                      .-..++.+....|..|..+.-.|
T Consensus       737 aAA~KLAECQeTI~sLGkQLksL  759 (769)
T PF05911_consen  737 AAAEKLAECQETIASLGKQLKSL  759 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            33333444444444444433333

The function of this family is unknown.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=96.18  E-value=0.27  Score=34.76  Aligned_cols=44  Identities=18%  Similarity=0.253  Sum_probs=17.4

Q ss_pred             HHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhh
Q psy5576          11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH   54 (156)
Q Consensus        11 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   54 (156)
                      |..|+.++..+..........+..+..+-..+.+-+..+.....
T Consensus        29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~   72 (201)
T PF13851_consen   29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVE   72 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            33344444444444444444444433333333333333333333

>KOG0971|consensus

Probab=96.16  E-value=0.73  Score=39.47  Aligned_cols=32  Identities=31%  Similarity=0.510  Sum_probs=22.3

Q ss_pred             hhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHH
Q psy5576           3 RKEKRKSELDGLKSELHGLKSELHGLKSELHG   34 (156)
Q Consensus         3 ~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~   34 (156)
                      |=+.|..+++.+...++++...+..++.++..
T Consensus       326 RaesLQ~eve~lkEr~deletdlEILKaEmee  357 (1243)
T KOG0971|consen  326 RAESLQQEVEALKERVDELETDLEILKAEMEE  357 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34567777777777777777777777666543

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.13  E-value=0.32  Score=35.15  Aligned_cols=72  Identities=22%  Similarity=0.317  Sum_probs=33.6

Q ss_pred             HhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5576          51 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE  122 (156)
Q Consensus        51 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~  122 (156)
                      .-+.+...+...+..+......++..+..++..++..+.+...+.......+..+..++..|..+++.+..+
T Consensus        32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444555555555555444444444444444444444444444444444444444444444333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=96.11  E-value=0.3  Score=34.58  Aligned_cols=42  Identities=17%  Similarity=0.191  Sum_probs=18.5

Q ss_pred             HHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHH
Q psy5576           6 KRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH   47 (156)
Q Consensus         6 ~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   47 (156)
                      +++.+|..+..........+..+..+-..+..-+..+.....
T Consensus        31 sLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~   72 (201)
T PF13851_consen   31 SLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVE   72 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            345555555554444444444444443333333333333333

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=96.11  E-value=0.0015  Score=55.60  Aligned_cols=101  Identities=27%  Similarity=0.374  Sum_probs=0.0

Q ss_pred             hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHh
Q psy5576           4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG   83 (156)
Q Consensus         4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (156)
                      |..+..+++.+...++.+.......+.....+...+..+...+......+.++......+..++..+...+......+..
T Consensus       154 k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~  233 (859)
T PF01576_consen  154 KSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQ  233 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666666666666555555555555556655555555555555555555555555555555555555554444


Q ss_pred             hHHHHHHHHHHHHhHHHHHHH
Q psy5576          84 LKSELHGLKSELHGLKSELHG  104 (156)
Q Consensus        84 ~~~e~~~l~~~~~~~~~~~~~  104 (156)
                      +......+...+.++...+..
T Consensus       234 l~r~k~~L~~qLeelk~~lee  254 (859)
T PF01576_consen  234 LQREKSSLESQLEELKRQLEE  254 (859)
T ss_dssp             ---------------------
T ss_pred             HHHHHHHHHHHHHhhHHHHHh
Confidence            444444444444444333333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.08  E-value=0.3  Score=34.36  Aligned_cols=17  Identities=18%  Similarity=0.358  Sum_probs=6.6

Q ss_pred             HhHhhHHHHHHhhhHhh
Q psy5576         128 SELHGLKSELHGLKSEL  144 (156)
Q Consensus       128 ~~~~~~~~~~~~l~~~~  144 (156)
                      .....+...+..+..++
T Consensus       164 kK~~~~~~~~~~l~~ei  180 (194)
T PF15619_consen  164 KKHKEAQEEVKSLQEEI  180 (194)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333334444444333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.01  E-value=0.71  Score=38.07  Aligned_cols=49  Identities=37%  Similarity=0.507  Sum_probs=27.3

Q ss_pred             HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhh
Q psy5576           5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL   53 (156)
Q Consensus         5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   53 (156)
                      .+++.+++.+..++..+...+..+...+.++..+..........+...+
T Consensus       331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~  379 (594)
T PF05667_consen  331 EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEEL  379 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666666666666666665555555555555544444444333

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=96.00  E-value=1.1  Score=40.13  Aligned_cols=69  Identities=25%  Similarity=0.404  Sum_probs=31.4

Q ss_pred             HhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHh
Q psy5576          12 DGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE   80 (156)
Q Consensus        12 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (156)
                      +.|..+++.+...+..+......+...+......+......+......+......+..+......+..+
T Consensus       603 e~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  671 (1201)
T PF12128_consen  603 EELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQE  671 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444444444444444444444444444443

>KOG0976|consensus

Probab=95.96  E-value=0.86  Score=38.61  Aligned_cols=68  Identities=24%  Similarity=0.383  Sum_probs=35.4

Q ss_pred             HhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHH
Q psy5576           8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH   75 (156)
Q Consensus         8 ~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   75 (156)
                      ++....++.++..++.++..++.....+..+...++..+...+.++.+.+.++..+.+++..+..++.
T Consensus        91 Rrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLs  158 (1265)
T KOG0976|consen   91 RRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELS  158 (1265)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            34445555555556666666655555555555555555555555554444444444444444444433

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.92  E-value=0.26  Score=32.38  Aligned_cols=43  Identities=19%  Similarity=0.271  Sum_probs=22.1

Q ss_pred             HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHH
Q psy5576           5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH   47 (156)
Q Consensus         5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   47 (156)
                      .++..++..+...+......+..+...+......+......+.
T Consensus         6 ~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE   48 (132)
T PF07926_consen    6 SSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYE   48 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555555555555555555444444443

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=95.84  E-value=0.48  Score=34.93  Aligned_cols=74  Identities=22%  Similarity=0.311  Sum_probs=35.6

Q ss_pred             HHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhh
Q psy5576          11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL   84 (156)
Q Consensus        11 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (156)
                      |.+|+..+.+-...++.-+.++..++.++...++.+-.-+.-..+.+..+...+.+|++++.-++..+..+..-
T Consensus        70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ek  143 (305)
T PF15290_consen   70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEK  143 (305)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence            44555555555555555555555555555544444433333333334444455555555555554444444433

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=95.78  E-value=0.59  Score=35.37  Aligned_cols=33  Identities=27%  Similarity=0.407  Sum_probs=13.0

Q ss_pred             HHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhh
Q psy5576         109 LHGLKSELHGLKSELHGLKSELHGLKSELHGLK  141 (156)
Q Consensus       109 l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~  141 (156)
                      ++.+..++..++..+..+-.+..++..+.+.+.
T Consensus       135 LEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk  167 (319)
T PF09789_consen  135 LEKLREQIEQLERDLQSLLDEKEELVTERDAYK  167 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444333333333333333333

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=95.77  E-value=0.6  Score=35.35  Aligned_cols=22  Identities=18%  Similarity=0.320  Sum_probs=9.9

Q ss_pred             hHHHHhhHHhHHHHHHHHHHhH
Q psy5576           4 KEKRKSELDGLKSELHGLKSEL   25 (156)
Q Consensus         4 ~~~~~~ei~~l~~~l~~~~~~~   25 (156)
                      |+.|+.-.+.+......++...
T Consensus        25 rDqyKlMAEqLqer~q~LKkk~   46 (319)
T PF09789_consen   25 RDQYKLMAEQLQERYQALKKKY   46 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444433

>KOG0995|consensus

Probab=95.76  E-value=0.84  Score=36.98  Aligned_cols=24  Identities=17%  Similarity=0.355  Sum_probs=9.0

Q ss_pred             HHHhhhhhHhhHHhHHHhHHhhHH
Q psy5576          49 LKSELHGLKSELHGLKSELHGLKS   72 (156)
Q Consensus        49 ~~~~~~~l~~~~~~~~~~~~~~~~   72 (156)
                      ++..+..++.++..+..-..+++.
T Consensus       264 lre~~~~L~~D~nK~~~y~~~~~~  287 (581)
T KOG0995|consen  264 LREKKARLQDDVNKFQAYVSQMKS  287 (581)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHh
Confidence            333333333333333333333333

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=95.74  E-value=0.78  Score=36.43  Aligned_cols=62  Identities=24%  Similarity=0.376  Sum_probs=29.5

Q ss_pred             HHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHH
Q psy5576          34 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL   95 (156)
Q Consensus        34 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~   95 (156)
                      .++..+..+.............++......-..+.++..++.....++..+...++++...+
T Consensus       299 ~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~  360 (622)
T COG5185         299 TLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL  360 (622)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            33333333444444444444444444444444455555555555555555555555555444

>KOG0971|consensus

Probab=95.69  E-value=1.2  Score=38.25  Aligned_cols=38  Identities=13%  Similarity=0.227  Sum_probs=14.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHH
Q psy5576          97 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK  134 (156)
Q Consensus        97 ~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~  134 (156)
                      ++..++..+...+..+..+++.....+-+...-+..++
T Consensus       494 DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfR  531 (1243)
T KOG0971|consen  494 DLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFR  531 (1243)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            33333333333333333333333333333333333333

>KOG0999|consensus

Probab=95.63  E-value=0.95  Score=36.69  Aligned_cols=81  Identities=26%  Similarity=0.309  Sum_probs=42.9

Q ss_pred             HHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHh
Q psy5576          18 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG   97 (156)
Q Consensus        18 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~   97 (156)
                      |-+++..+..+...+...+.+.+.+.....+....-...+.+..+++.++..++-.-.++-.++..++.+.-.+...++.
T Consensus       109 I~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~  188 (772)
T KOG0999|consen  109 ILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSN  188 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            44444444444444444444444444444444444555555566666666666666666666666666555555544443


Q ss_pred             H
Q psy5576          98 L   98 (156)
Q Consensus        98 ~   98 (156)
                      +
T Consensus       189 L  189 (772)
T KOG0999|consen  189 L  189 (772)
T ss_pred             H
Confidence            3

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=95.52  E-value=0.62  Score=33.80  Aligned_cols=91  Identities=22%  Similarity=0.376  Sum_probs=47.9

Q ss_pred             HHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHh------------HHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHh
Q psy5576           6 KRKSELDGLKSELHGLKSELHGLKSELHGLKSE------------LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE   73 (156)
Q Consensus         6 ~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~   73 (156)
                      .++...+.+...+...+..+..+...+..+...            +..+...+......+......+......+..+...
T Consensus        35 ~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~  114 (240)
T PF12795_consen   35 KQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTR  114 (240)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            345555666666666666666666666666443            34444445545555555555555555555544444


Q ss_pred             HHHHHHhHHhhHHHHHHHHHHHH
Q psy5576          74 LHGLKSELHGLKSELHGLKSELH   96 (156)
Q Consensus        74 ~~~~~~~~~~~~~e~~~l~~~~~   96 (156)
                      .......+......+.++...+.
T Consensus       115 p~~aq~~l~~~~~~l~ei~~~L~  137 (240)
T PF12795_consen  115 PERAQQQLSEARQRLQEIRNQLQ  137 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            44444444444444444444443

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=95.50  E-value=0.0036  Score=53.28  Aligned_cols=66  Identities=24%  Similarity=0.362  Sum_probs=0.0

Q ss_pred             HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhh
Q psy5576           5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL   70 (156)
Q Consensus         5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~   70 (156)
                      ..|..+++++...++........+..+...+...+..+......+...+.....+...+..++..+
T Consensus       352 ~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~L  417 (859)
T PF01576_consen  352 KRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKL  417 (859)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            345556666666665555555555555444444444444444433333333333333333333333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.47  E-value=1  Score=36.11  Aligned_cols=9  Identities=11%  Similarity=0.338  Sum_probs=3.3

Q ss_pred             HHhHHHHHH
Q psy5576          11 LDGLKSELH   19 (156)
Q Consensus        11 i~~l~~~l~   19 (156)
                      +..++.++.
T Consensus       170 l~~~~~~L~  178 (498)
T TIGR03007       170 IKTYEKKLE  178 (498)
T ss_pred             HHHHHHHHH
Confidence            333333333

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=95.44  E-value=1.2  Score=36.54  Aligned_cols=74  Identities=18%  Similarity=0.368  Sum_probs=35.3

Q ss_pred             HHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhh
Q psy5576          71 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL  144 (156)
Q Consensus        71 ~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~  144 (156)
                      ..++..+......+...+..-....+.+...+..+...+..+..+...+...+..+...-...+..+..+...+
T Consensus       350 ~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l  423 (560)
T PF06160_consen  350 EKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKL  423 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444555555555555555555555555555555554444444444444433

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG4673|consensus

Probab=95.33  E-value=1.4  Score=36.71  Aligned_cols=18  Identities=28%  Similarity=0.471  Sum_probs=12.0

Q ss_pred             chhHHHHhhHHhHHHHHH
Q psy5576           2 RRKEKRKSELDGLKSELH   19 (156)
Q Consensus         2 ~~~~~~~~ei~~l~~~l~   19 (156)
                      +.|++++.++..++.+++
T Consensus       423 kERDalr~e~kslk~ela  440 (961)
T KOG4673|consen  423 KERDALRREQKSLKKELA  440 (961)
T ss_pred             HhHHHHHHHHHHHHHHHH
Confidence            357777777777666543

>KOG0018|consensus

Probab=95.21  E-value=1  Score=39.11  Aligned_cols=58  Identities=19%  Similarity=0.343  Sum_probs=29.2

Q ss_pred             HHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHH
Q psy5576          71 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS  128 (156)
Q Consensus        71 ~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~  128 (156)
                      +.........+......+.............+..++.++..+......+..+|.....
T Consensus       295 ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q  352 (1141)
T KOG0018|consen  295 KENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQ  352 (1141)
T ss_pred             chhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333334444455555555555555555555555555555555555555555544433

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=95.19  E-value=1.1  Score=34.72  Aligned_cols=21  Identities=24%  Similarity=0.382  Sum_probs=8.1

Q ss_pred             hHHhHHHHHHHHHHhHHhHHH
Q psy5576          10 ELDGLKSELHGLKSELHGLKS   30 (156)
Q Consensus        10 ei~~l~~~l~~~~~~~~~~~~   30 (156)
                      .|..+..++..........+.
T Consensus        82 qlr~~rtel~~a~~~k~~~e~  102 (499)
T COG4372          82 QLRALRTELGTAQGEKRAAET  102 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

>KOG0978|consensus

Probab=95.19  E-value=1.6  Score=36.53  Aligned_cols=59  Identities=27%  Similarity=0.275  Sum_probs=22.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhh
Q psy5576          88 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGL  146 (156)
Q Consensus        88 ~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~  146 (156)
                      +........+.......+..++....+.+.++...+.+....+..+......++.++..
T Consensus       554 le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~  612 (698)
T KOG0978|consen  554 LEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELER  612 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333444444444444444333333333333333333333

>KOG0804|consensus

Probab=95.19  E-value=1.2  Score=35.11  Aligned_cols=99  Identities=22%  Similarity=0.260  Sum_probs=46.1

Q ss_pred             HHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5576          31 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH  110 (156)
Q Consensus        31 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~  110 (156)
                      ++...+..+.........+......+.......+..+.++...+.....++......-..+..........+.++++   
T Consensus       348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e---  424 (493)
T KOG0804|consen  348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEE---  424 (493)
T ss_pred             HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---
Confidence            44444444444444444445555555555555555555555555555555555554444444433333333333222   


Q ss_pred             HHHHHHHhHHHhHHhHHHhHhh
Q psy5576         111 GLKSELHGLKSELHGLKSELHG  132 (156)
Q Consensus       111 ~l~~~~~~~~~~i~~l~~~~~~  132 (156)
                      .........+..|.++++++.+
T Consensus       425 ~~~~~~~s~d~~I~dLqEQlrD  446 (493)
T KOG0804|consen  425 REKEALGSKDEKITDLQEQLRD  446 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            2333333444444444444443

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=95.19  E-value=0.72  Score=32.54  Aligned_cols=91  Identities=30%  Similarity=0.398  Sum_probs=52.6

Q ss_pred             HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHH
Q psy5576           7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS   86 (156)
Q Consensus         7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |+..+.+...++...-..+-.+...+...+..+......+..+...+..-..++.....++.+...+...+...+..++.
T Consensus        15 LKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~   94 (202)
T PF06818_consen   15 LKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEA   94 (202)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHH
Confidence            45566666666666666666666666666666666666666565555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHh
Q psy5576          87 ELHGLKSELHG   97 (156)
Q Consensus        87 e~~~l~~~~~~   97 (156)
                      ++..+......
T Consensus        95 El~~Lr~~l~~  105 (202)
T PF06818_consen   95 ELAELREELAC  105 (202)
T ss_pred             HHHHHHHHHHh
Confidence            55555544444

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PRK10884 SH3 domain-containing protein; Provisional

Probab=95.15  E-value=0.77  Score=32.64  Aligned_cols=23  Identities=17%  Similarity=0.195  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHHhHH
Q psy5576         102 LHGLKSELHGLKSELHGLKSELH  124 (156)
Q Consensus       102 ~~~l~~~l~~l~~~~~~~~~~i~  124 (156)
                      ...+..++..+..+...++.++.
T Consensus       141 n~~L~~~l~~~~~~~~~l~~~~~  163 (206)
T PRK10884        141 NQKLKNQLIVAQKKVDAANLQLD  163 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444443333333

>KOG1003|consensus

Probab=95.01  E-value=0.79  Score=32.06  Aligned_cols=40  Identities=13%  Similarity=0.105  Sum_probs=21.7

Q ss_pred             HHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHh
Q psy5576           5 EKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKS   44 (156)
Q Consensus         5 ~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   44 (156)
                      .++++.|.-+..+++..+..+..+..++..+.+..++...
T Consensus         7 a~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er   46 (205)
T KOG1003|consen    7 AALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESER   46 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence            3455566666666666555555555555555544443333

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=94.99  E-value=0.57  Score=30.32  Aligned_cols=32  Identities=22%  Similarity=0.332  Sum_probs=11.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhH
Q psy5576          88 LHGLKSELHGLKSELHGLKSELHGLKSELHGL  119 (156)
Q Consensus        88 ~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~  119 (156)
                      +..+......+-.-+.+.......|...+..+
T Consensus        77 l~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl  108 (120)
T PF12325_consen   77 LEELQQRYQTLLELLGEKSEEVEELRADVQDL  108 (120)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.84  E-value=1.7  Score=34.96  Aligned_cols=28  Identities=14%  Similarity=0.259  Sum_probs=13.7

Q ss_pred             hhHHhHHHHHHHHHHhHHhHHHHHHHHH
Q psy5576           9 SELDGLKSELHGLKSELHGLKSELHGLK   36 (156)
Q Consensus         9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~   36 (156)
                      .-.+-+..++..+..++...+..+...+
T Consensus       161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f~  188 (498)
T TIGR03007       161 SAQRFIDEQIKTYEKKLEAAENRLKAFK  188 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555555555544443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=94.78  E-value=0.87  Score=31.41  Aligned_cols=20  Identities=25%  Similarity=0.217  Sum_probs=8.9

Q ss_pred             HHhHHHHHHHHHHhHHhHHH
Q psy5576          11 LDGLKSELHGLKSELHGLKS   30 (156)
Q Consensus        11 i~~l~~~l~~~~~~~~~~~~   30 (156)
                      .-.+...+..+..++...+.
T Consensus        15 ~~~lk~~l~k~~~ql~~ke~   34 (177)
T PF13870_consen   15 NITLKHQLAKLEEQLRQKEE   34 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444443

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=94.67  E-value=0.93  Score=31.26  Aligned_cols=30  Identities=23%  Similarity=0.331  Sum_probs=17.6

Q ss_pred             HhhHHhHHHHHHHHHHhHHhHHHHHHHHHH
Q psy5576           8 KSELDGLKSELHGLKSELHGLKSELHGLKS   37 (156)
Q Consensus         8 ~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~   37 (156)
                      .++++.+.-....+...+..+...+.....
T Consensus         5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~   34 (177)
T PF13870_consen    5 RNEISKLRLKNITLKHQLAKLEEQLRQKEE   34 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666666666666666555544

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=94.66  E-value=1.4  Score=33.23  Aligned_cols=89  Identities=25%  Similarity=0.275  Sum_probs=56.7

Q ss_pred             hHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHH
Q psy5576          10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH   89 (156)
Q Consensus        10 ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~   89 (156)
                      .+.+++..+.+++.++....-.-.++..+-..+..++.-++..+.++...+..+..++.....+++..+..+..+..++.
T Consensus        78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~  157 (302)
T PF09738_consen   78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD  157 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666766666666666666666666666666666666666666666666666555666666666666666666


Q ss_pred             HHHHHHHhH
Q psy5576          90 GLKSELHGL   98 (156)
Q Consensus        90 ~l~~~~~~~   98 (156)
                      .+...+...
T Consensus       158 ~Lre~L~~r  166 (302)
T PF09738_consen  158 ELREQLKQR  166 (302)
T ss_pred             HHHHHHHHH
Confidence            666555443

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>KOG0979|consensus

Probab=94.62  E-value=2.8  Score=36.47  Aligned_cols=36  Identities=22%  Similarity=0.401  Sum_probs=14.9

Q ss_pred             HHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhH
Q psy5576          11 LDGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL   46 (156)
Q Consensus        11 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l   46 (156)
                      +.+++.....+...+......+..++.+.+.+...+
T Consensus       183 L~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdV  218 (1072)
T KOG0979|consen  183 LMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDV  218 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444443333

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=94.54  E-value=0.53  Score=27.86  Aligned_cols=56  Identities=23%  Similarity=0.337  Sum_probs=24.8

Q ss_pred             HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHH
Q psy5576          81 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE  136 (156)
Q Consensus        81 ~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~  136 (156)
                      +.-++.+++++......+..+...+......|..+...++.+-..+..++..+-..
T Consensus        20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk   75 (79)
T PRK15422         20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR   75 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333444444444434444444444444444444444455545555554444433

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=94.51  E-value=0.97  Score=30.76  Aligned_cols=23  Identities=13%  Similarity=0.238  Sum_probs=9.5

Q ss_pred             hHHHhHHhHHHhHhhHHHHHHhh
Q psy5576         118 GLKSELHGLKSELHGLKSELHGL  140 (156)
Q Consensus       118 ~~~~~i~~l~~~~~~~~~~~~~l  140 (156)
                      .+..-++-+...+.++...++.+
T Consensus       130 qi~vvl~yL~~dl~~v~~~~e~~  152 (159)
T PF05384_consen  130 QIGVVLNYLSGDLQQVSEQIEDA  152 (159)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHH
Confidence            33333444444444444444433

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=94.50  E-value=1.6  Score=35.83  Aligned_cols=31  Identities=19%  Similarity=0.183  Sum_probs=13.5

Q ss_pred             HHHhHHhHHHhHhhHHHHHHhhhHhhhhhhh
Q psy5576         119 LKSELHGLKSELHGLKSELHGLKSELGLNCY  149 (156)
Q Consensus       119 ~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~  149 (156)
                      .+..|..|...+......++.|...+.-+.+
T Consensus       479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k  509 (652)
T COG2433         479 RDRRIERLEKELEEKKKRVEELERKLAELRK  509 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444443

>KOG0999|consensus

Probab=94.49  E-value=2.2  Score=34.73  Aligned_cols=32  Identities=31%  Similarity=0.373  Sum_probs=15.2

Q ss_pred             hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHH
Q psy5576           4 KEKRKSELDGLKSELHGLKSELHGLKSELHGL   35 (156)
Q Consensus         4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~   35 (156)
                      |..++...++|...++.....+...+..+.+.
T Consensus        45 K~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~   76 (772)
T KOG0999|consen   45 KEDLKQQLEELEAEYDLARTELDQTKEALGQY   76 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555544444444444433

>KOG0946|consensus

Probab=94.46  E-value=1.7  Score=36.86  Aligned_cols=34  Identities=18%  Similarity=0.286  Sum_probs=13.5

Q ss_pred             hhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHH
Q psy5576          58 SELHGLKSELHGLKSELHGLKSELHGLKSELHGL   91 (156)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l   91 (156)
                      .+...+..++..+..++....+.+..+...+..+
T Consensus       848 ~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl  881 (970)
T KOG0946|consen  848 NELKLIEQKLSNLQEKIKFGNNLIKELTEKISSL  881 (970)
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhH
Confidence            3333334444444444444444444444333333

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=94.39  E-value=1.1  Score=32.13  Aligned_cols=73  Identities=30%  Similarity=0.386  Sum_probs=30.6

Q ss_pred             hhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHH
Q psy5576          55 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK  127 (156)
Q Consensus        55 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~  127 (156)
                      +++..+..+...++....+...+..++..++.+.+.....++.+..+.+.++..+..+-.+...+...++++.
T Consensus       132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe  204 (290)
T COG4026         132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE  204 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence            3333333444444444444444444444444444444444444444444444444444444444444433333

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=94.39  E-value=1.4  Score=32.17  Aligned_cols=35  Identities=26%  Similarity=0.338  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHH
Q psy5576         101 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS  135 (156)
Q Consensus       101 ~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~  135 (156)
                      .+..+...+..|.........+...|..++.....
T Consensus        83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~  117 (246)
T PF00769_consen   83 ELREAEAEIARLEEESERKEEEAEELQEELEEARE  117 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333334444444444444443333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG0239|consensus

Probab=94.29  E-value=2.8  Score=35.19  Aligned_cols=98  Identities=27%  Similarity=0.389  Sum_probs=49.5

Q ss_pred             hHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHH---HhHhh
Q psy5576          56 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK---SELHG  132 (156)
Q Consensus        56 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~---~~~~~  132 (156)
                      .......+.......+.++..+...+..+......+......+.......-..+..+...+......+.+..   .....
T Consensus       225 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~k  304 (670)
T KOG0239|consen  225 LRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRK  304 (670)
T ss_pred             HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444555555555555555555555555544444444444343333333333333333   55556


Q ss_pred             HHHHHHhhhHhhhhhhhhHhh
Q psy5576         133 LKSELHGLKSELGLNCYLTYF  153 (156)
Q Consensus       133 ~~~~~~~l~~~~~~~~~~~~~  153 (156)
                      +...+..+...+.+-|.+--|
T Consensus       305 L~N~i~eLkGnIRV~CRvRP~  325 (670)
T KOG0239|consen  305 LHNEILELKGNIRVFCRVRPL  325 (670)
T ss_pred             HHHHHHHhhcCceEEEEecCC
Confidence            666677777777777765443

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=94.22  E-value=0.62  Score=35.71  Aligned_cols=74  Identities=23%  Similarity=0.351  Sum_probs=32.0

Q ss_pred             HHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576          67 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL  140 (156)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l  140 (156)
                      +......+..+...+..+..+.+....+...++..+.....++.....=+..+..+...+...+..+......+
T Consensus       237 L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l  310 (344)
T PF12777_consen  237 LAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNL  310 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhccc
Confidence            33333333333333333333333333333333344444444444444444555555555555555555544443

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=94.12  E-value=3.2  Score=35.24  Aligned_cols=19  Identities=16%  Similarity=0.289  Sum_probs=8.0

Q ss_pred             HhhHHhHHHHHHHHHHhHH
Q psy5576           8 KSELDGLKSELHGLKSELH   26 (156)
Q Consensus         8 ~~ei~~l~~~l~~~~~~~~   26 (156)
                      ..++..++.++...+.++.
T Consensus       200 ~~ql~~l~~~l~~aE~~l~  218 (754)
T TIGR01005       200 APEIADLSKQSRDAEAEVA  218 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444433333

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=94.00  E-value=2  Score=32.49  Aligned_cols=54  Identities=17%  Similarity=0.294  Sum_probs=21.6

Q ss_pred             hhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Q psy5576          55 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE  108 (156)
Q Consensus        55 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~  108 (156)
                      .+..++..+...+..+...+.....-+..+..+++.+...+..++.+...+..+
T Consensus       213 ~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k  266 (309)
T PF09728_consen  213 ELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSK  266 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444443334444444444444444444333333333333

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.88  E-value=0.68  Score=26.65  Aligned_cols=58  Identities=24%  Similarity=0.345  Sum_probs=29.4

Q ss_pred             HhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHH
Q psy5576          79 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE  136 (156)
Q Consensus        79 ~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~  136 (156)
                      .-+.-++.+++++......+..+...+....+.|..+-..++.+-..+..++..+-..
T Consensus        18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk   75 (79)
T COG3074          18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK   75 (79)
T ss_pred             HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3334444444445444444445555555555555555555555555555555544433

>KOG4360|consensus

Probab=93.87  E-value=2.8  Score=33.71  Aligned_cols=62  Identities=24%  Similarity=0.271  Sum_probs=26.9

Q ss_pred             HHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5576          49 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH  110 (156)
Q Consensus        49 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~  110 (156)
                      .-.++.+.......+...++....+..+...+...+..++.++...+..+.-+...+-.-+.
T Consensus       203 ~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq  264 (596)
T KOG4360|consen  203 CVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQ  264 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444333333

>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition

Probab=93.83  E-value=0.27  Score=38.13  Aligned_cols=41  Identities=15%  Similarity=0.410  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhh
Q psy5576         101 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK  141 (156)
Q Consensus       101 ~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~  141 (156)
                      .+..++..+..++..+..+...+..+...+..+...+.++.
T Consensus       145 Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlE  185 (370)
T PF02994_consen  145 RIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLE  185 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444444444433

Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=93.70  E-value=1.6  Score=30.20  Aligned_cols=47  Identities=17%  Similarity=0.369  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhhhc
Q psy5576         104 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYFLF  155 (156)
Q Consensus       104 ~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  155 (156)
                      ........++.++.+++..|.   ..+..++..++..  ++++++|++.++|
T Consensus       117 ~~r~e~~~~~~ki~e~~~ki~---~ei~~lr~~iE~~--K~~~lr~~~g~i~  163 (177)
T PF07798_consen  117 RIREEQAKQELKIQELNNKID---TEIANLRTEIESL--KWDTLRWLVGVIF  163 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            344444445555555544442   3344566666654  7788888776654

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=93.70  E-value=2.1  Score=31.70  Aligned_cols=21  Identities=43%  Similarity=0.483  Sum_probs=8.7

Q ss_pred             HHhHHHHHHHHHHhHHhHHHH
Q psy5576          11 LDGLKSELHGLKSELHGLKSE   31 (156)
Q Consensus        11 i~~l~~~l~~~~~~~~~~~~~   31 (156)
                      +-.+...+..+......+...
T Consensus        22 L~~~~~~l~~~~~~~~~l~~~   42 (302)
T PF10186_consen   22 LLELRSELQQLKEENEELRRR   42 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK11281 hypothetical protein; Provisional

Probab=93.70  E-value=4.9  Score=35.84  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=9.2

Q ss_pred             hHHhHHHHHHHHHHhHHhHHHHHH
Q psy5576          10 ELDGLKSELHGLKSELHGLKSELH   33 (156)
Q Consensus        10 ei~~l~~~l~~~~~~~~~~~~~~~   33 (156)
                      +.+.+.+.+......+......+.
T Consensus        81 ~~~~L~k~l~~Ap~~l~~a~~~Le  104 (1113)
T PRK11281         81 ETEQLKQQLAQAPAKLRQAQAELE  104 (1113)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHH
Confidence            333333334443333333333333

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=93.64  E-value=2.4  Score=32.03  Aligned_cols=86  Identities=24%  Similarity=0.271  Sum_probs=41.0

Q ss_pred             HHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHH
Q psy5576          49 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS  128 (156)
Q Consensus        49 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~  128 (156)
                      ++..+.+++..+...-....++.++...+.-++..+...+.++...+..++.++.+....+..++..++.+..++..++.
T Consensus        82 lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre  161 (302)
T PF09738_consen   82 LKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELRE  161 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444455444444444444444455555555555555555555


Q ss_pred             hHhhHH
Q psy5576         129 ELHGLK  134 (156)
Q Consensus       129 ~~~~~~  134 (156)
                      .+....
T Consensus       162 ~L~~rd  167 (302)
T PF09738_consen  162 QLKQRD  167 (302)
T ss_pred             HHHHHH
Confidence            544333

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=93.53  E-value=1.6  Score=29.72  Aligned_cols=47  Identities=19%  Similarity=0.296  Sum_probs=19.9

Q ss_pred             HHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHh
Q psy5576          34 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE   80 (156)
Q Consensus        34 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (156)
                      ..+.++..+..++..++..+.....+.+.+..........+......
T Consensus        24 ~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~   70 (159)
T PF05384_consen   24 QARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRN   70 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33334444444444444444444444444444444444444444333

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=93.51  E-value=2.8  Score=32.46  Aligned_cols=24  Identities=29%  Similarity=0.387  Sum_probs=9.0

Q ss_pred             HHHHHHHhHHhHHhhHHhHHHhhh
Q psy5576          31 ELHGLKSELHGLKSELHGLKSELH   54 (156)
Q Consensus        31 ~~~~~~~~~~~~~~~l~~~~~~~~   54 (156)
                      .+.++..-...+...+..++..+.
T Consensus       221 hleqm~~~~~~I~~~~~~~~~~L~  244 (359)
T PF10498_consen  221 HLEQMKQHKKSIESALPETKSQLD  244 (359)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHH
Confidence            333333333333333333333333

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=93.51  E-value=2.3  Score=31.51  Aligned_cols=23  Identities=39%  Similarity=0.518  Sum_probs=9.6

Q ss_pred             HHHHHHhHHhHHHHHHHHHHhHH
Q psy5576          18 LHGLKSELHGLKSELHGLKSELH   40 (156)
Q Consensus        18 l~~~~~~~~~~~~~~~~~~~~~~   40 (156)
                      +..+...+..+......+...+.
T Consensus        22 L~~~~~~l~~~~~~~~~l~~~i~   44 (302)
T PF10186_consen   22 LLELRSELQQLKEENEELRRRIE   44 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=93.31  E-value=2.1  Score=30.46  Aligned_cols=16  Identities=19%  Similarity=0.358  Sum_probs=5.7

Q ss_pred             HHHHHHhHHHhHHhHH
Q psy5576         112 LKSELHGLKSELHGLK  127 (156)
Q Consensus       112 l~~~~~~~~~~i~~l~  127 (156)
                      |.+.+...+-.+..+.
T Consensus       166 Lqa~lkk~e~~~~SLe  181 (207)
T PF05010_consen  166 LQASLKKEEMKVQSLE  181 (207)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>KOG0994|consensus

Probab=93.15  E-value=6  Score=35.29  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHH
Q psy5576         103 HGLKSELHGLKSELHGLKSELHGLKSELHGLK  134 (156)
Q Consensus       103 ~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~  134 (156)
                      .+|+.....-+..+.....++..+..++..+.
T Consensus      1713 ~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl 1744 (1758)
T KOG0994|consen 1713 KDLELEYLRNEQALEDKAAELAGLEKRVESVL 1744 (1758)
T ss_pred             HHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence            33333333333333344444444444444333

>PRK11281 hypothetical protein; Provisional

Probab=93.13  E-value=6.1  Score=35.26  Aligned_cols=9  Identities=22%  Similarity=0.265  Sum_probs=3.2

Q ss_pred             HhhHHhHHH
Q psy5576           8 KSELDGLKS   16 (156)
Q Consensus         8 ~~ei~~l~~   16 (156)
                      +..+...-.
T Consensus        86 ~k~l~~Ap~   94 (1113)
T PRK11281         86 KQQLAQAPA   94 (1113)
T ss_pred             HHHHHHhHH
Confidence            333333333

>KOG0962|consensus

Probab=92.94  E-value=6.7  Score=35.27  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=11.6

Q ss_pred             hHHhHHHhHHhhHHhHHHHHHhHH
Q psy5576          59 ELHGLKSELHGLKSELHGLKSELH   82 (156)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~   82 (156)
                      ++..+..+...+..++..+...+.
T Consensus       269 ~~~~l~~e~~~l~~~~~~l~~~i~  292 (1294)
T KOG0962|consen  269 QVKLLDSEHKNLKKQISRLREKIL  292 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc
Confidence            344444555555555555544433

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.92  E-value=2.7  Score=30.68  Aligned_cols=48  Identities=19%  Similarity=0.292  Sum_probs=19.1

Q ss_pred             hHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHH
Q psy5576          48 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL   95 (156)
Q Consensus        48 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~   95 (156)
                      .+...+..+..++..+......+...+.....++..+..+++.+....
T Consensus        53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~  100 (251)
T PF11932_consen   53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETR  100 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333344444444444444444444444443333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>KOG0243|consensus

Probab=92.80  E-value=6.3  Score=34.60  Aligned_cols=33  Identities=42%  Similarity=0.460  Sum_probs=13.4

Q ss_pred             hHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHH
Q psy5576          62 GLKSELHGLKSELHGLKSELHGLKSELHGLKSE   94 (156)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~   94 (156)
                      .+..+...++..+.....++..+..++..+...
T Consensus       480 ~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~  512 (1041)
T KOG0243|consen  480 LLKEEKEKLKSKLQNKNKELESLKEELQQAKAT  512 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444433

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=92.75  E-value=4.2  Score=32.43  Aligned_cols=20  Identities=30%  Similarity=0.506  Sum_probs=7.9

Q ss_pred             HhHHhHHHhHhhHHHHHHhh
Q psy5576         121 SELHGLKSELHGLKSELHGL  140 (156)
Q Consensus       121 ~~i~~l~~~~~~~~~~~~~l  140 (156)
                      .++......+..+...+..+
T Consensus       291 ~~l~~~~~~l~~~~~~l~~a  310 (457)
T TIGR01000       291 QEITDLNQKLLELESKIKSL  310 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444333333

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=92.73  E-value=1.5  Score=27.16  Aligned_cols=37  Identities=19%  Similarity=0.152  Sum_probs=13.7

Q ss_pred             hhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHH
Q psy5576          58 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE   94 (156)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~   94 (156)
                      .++..++..+.++..++......+-......+.+..+
T Consensus        24 ~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e   60 (96)
T PF08647_consen   24 KELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNE   60 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3333333333333333333333333333333333333

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=92.73  E-value=3.2  Score=31.05  Aligned_cols=29  Identities=28%  Similarity=0.415  Sum_probs=12.1

Q ss_pred             HhHHHHHHHHHHhHHhHHHHHHHHHHhHH
Q psy5576          12 DGLKSELHGLKSELHGLKSELHGLKSELH   40 (156)
Q Consensus        12 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~   40 (156)
                      +-|..++......+..++.++...+..+.
T Consensus       147 e~LsQqLskaesK~nsLe~elh~trdaLr  175 (305)
T PF14915_consen  147 EILSQQLSKAESKFNSLEIELHHTRDALR  175 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444333

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=92.60  E-value=2.1  Score=28.64  Aligned_cols=17  Identities=29%  Similarity=0.403  Sum_probs=8.1

Q ss_pred             HHhHhhHHHHHHhhhHh
Q psy5576         127 KSELHGLKSELHGLKSE  143 (156)
Q Consensus       127 ~~~~~~~~~~~~~l~~~  143 (156)
                      ..++.....+++.+++.
T Consensus       132 ~~e~rkke~E~~kLk~r  148 (151)
T PF11559_consen  132 EHELRKKEREIEKLKER  148 (151)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34444444555555443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG4809|consensus

Probab=92.52  E-value=5  Score=32.67  Aligned_cols=17  Identities=18%  Similarity=0.264  Sum_probs=6.9

Q ss_pred             HHHHhHHHhHHhHHHhH
Q psy5576         114 SELHGLKSELHGLKSEL  130 (156)
Q Consensus       114 ~~~~~~~~~i~~l~~~~  130 (156)
                      ..+..++.++..+...+
T Consensus       421 d~i~~le~e~~~y~de~  437 (654)
T KOG4809|consen  421 DQIKQLEKEASYYRDEC  437 (654)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444444444333

>KOG0946|consensus

Probab=92.50  E-value=6.2  Score=33.73  Aligned_cols=30  Identities=30%  Similarity=0.395  Sum_probs=13.8

Q ss_pred             HHHHHHHHHhHHHhHHhHHHhHhhHHHHHH
Q psy5576         109 LHGLKSELHGLKSELHGLKSELHGLKSELH  138 (156)
Q Consensus       109 l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~  138 (156)
                      +..+..++..++.++..+....+.....+.
T Consensus       808 l~~~q~e~~~~keq~~t~~~~tsa~a~~le  837 (970)
T KOG0946|consen  808 LQELQSELTQLKEQIQTLLERTSAAADSLE  837 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence            444444444444444444444444444433

>KOG0972|consensus

Probab=92.27  E-value=3.7  Score=30.72  Aligned_cols=81  Identities=17%  Similarity=0.302  Sum_probs=34.7

Q ss_pred             hHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhH------HhHHHhHhhHHHHHHh
Q psy5576          66 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL------HGLKSELHGLKSELHG  139 (156)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i------~~l~~~~~~~~~~~~~  139 (156)
                      ++..+-.+.......+..+...........+.-...+.+...+++.++.++.+-...+      -.+++-+..+..+...
T Consensus       274 qL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~  353 (384)
T KOG0972|consen  274 QLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQT  353 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHh
Confidence            3333333333333333444443444444444444444444444444444444433322      2344445555555555


Q ss_pred             hhHhhhh
Q psy5576         140 LKSELGL  146 (156)
Q Consensus       140 l~~~~~~  146 (156)
                      +.-++++
T Consensus       354 mnv~igv  360 (384)
T KOG0972|consen  354 MNVQIGV  360 (384)
T ss_pred             hhhheeh
Confidence            5544443

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=92.27  E-value=1.3  Score=30.35  Aligned_cols=9  Identities=22%  Similarity=0.246  Sum_probs=3.2

Q ss_pred             hHHHHHHhh
Q psy5576         132 GLKSELHGL  140 (156)
Q Consensus       132 ~~~~~~~~l  140 (156)
                      .+......+
T Consensus       149 ~~~~~~~~~  157 (169)
T PF07106_consen  149 KLEKEYKKW  157 (169)
T ss_pred             HHHHHHHHH
Confidence            333333333

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF13514 AAA_27: AAA domain

Probab=92.12  E-value=8.4  Score=34.41  Aligned_cols=69  Identities=30%  Similarity=0.368  Sum_probs=35.5

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHH--hHHhHHHhHhhHHHHHHhhhHhhhhhhhhHh
Q psy5576          84 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS--ELHGLKSELHGLKSELHGLKSELGLNCYLTY  152 (156)
Q Consensus        84 ~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~--~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  152 (156)
                      +..++..+...+..+...+..+...+..++..+..+..  .+..+..+.......+...-.+|..+.....
T Consensus       894 l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~~~~~~~~~la~~  964 (1111)
T PF13514_consen  894 LEAELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQEREEAEAELEELAEEWAALRLAAE  964 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444432  3344555666666666666666665554443

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=92.03  E-value=5.3  Score=31.95  Aligned_cols=67  Identities=21%  Similarity=0.353  Sum_probs=34.3

Q ss_pred             hHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHH
Q psy5576          41 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS  107 (156)
Q Consensus        41 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~  107 (156)
                      .+.+.+..++..+..+......+..-...++......-..+..+..++...+.++..++..+..+..
T Consensus       292 k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~  358 (622)
T COG5185         292 KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHK  358 (622)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            3445555555666666555555555555555555444444444444444444444444444444433

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=91.71  E-value=3.4  Score=28.98  Aligned_cols=53  Identities=17%  Similarity=0.241  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHh
Q psy5576         100 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTY  152 (156)
Q Consensus       100 ~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  152 (156)
                      ..+.....-......++.+...-+..-+.++..+...+......|.-|+..+|
T Consensus       123 ~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~  175 (188)
T PF05335_consen  123 ANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAY  175 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444555555555555566666666666666665554

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=91.63  E-value=5.9  Score=31.61  Aligned_cols=22  Identities=36%  Similarity=0.557  Sum_probs=8.7

Q ss_pred             HHHHHhHHHhHHhHHHhHhhHH
Q psy5576         113 KSELHGLKSELHGLKSELHGLK  134 (156)
Q Consensus       113 ~~~~~~~~~~i~~l~~~~~~~~  134 (156)
                      ..++......+......+....
T Consensus       290 ~~~l~~~~~~l~~~~~~l~~a~  311 (457)
T TIGR01000       290 KQEITDLNQKLLELESKIKSLK  311 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444443333

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>KOG4643|consensus

Probab=91.59  E-value=8.9  Score=33.62  Aligned_cols=34  Identities=24%  Similarity=0.258  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHH
Q psy5576         101 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLK  134 (156)
Q Consensus       101 ~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~  134 (156)
                      ++..+......+..++......+..+...+..+.
T Consensus       503 elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe  536 (1195)
T KOG4643|consen  503 ELSRLHALKNELKEQYKTCDIQYELLSNKLEELE  536 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333

>KOG0994|consensus

Probab=91.56  E-value=9.9  Score=34.07  Aligned_cols=33  Identities=9%  Similarity=0.100  Sum_probs=12.1

Q ss_pred             HHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhh
Q psy5576          22 KSELHGLKSELHGLKSELHGLKSELHGLKSELH   54 (156)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   54 (156)
                      ...++.........+..+......+..++..+.
T Consensus      1569 ~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~ 1601 (1758)
T KOG0994|consen 1569 VEALEEADVAQGEAQDAIQGADRDIRLAQQLLA 1601 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            333333333333333333333333333333333

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=91.40  E-value=2.3  Score=26.81  Aligned_cols=48  Identities=31%  Similarity=0.559  Sum_probs=20.1

Q ss_pred             HHHhHHHHHHHHHHHHHHH--HHHHHhHHHhHHhHHHhHhhHHHHHHhhh
Q psy5576          94 ELHGLKSELHGLKSELHGL--KSELHGLKSELHGLKSELHGLKSELHGLK  141 (156)
Q Consensus        94 ~~~~~~~~~~~l~~~l~~l--~~~~~~~~~~i~~l~~~~~~~~~~~~~l~  141 (156)
                      .+......+..++.++..+  ...+..+...+.++..++..+...++.+.
T Consensus        43 ~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~   92 (106)
T PF10805_consen   43 RLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS   92 (106)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3333333344444444444  44444444444444444444444444443

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>KOG1853|consensus

Probab=91.39  E-value=4.4  Score=29.70  Aligned_cols=107  Identities=21%  Similarity=0.237  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHH
Q psy5576          14 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS   93 (156)
Q Consensus        14 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~   93 (156)
                      |..+++.++.....+......+..+...+.+.+.....+.......+..-.+....++.   ++..-+..++...+.++.
T Consensus        50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aike---ql~kyiReLEQaNDdLEr  126 (333)
T KOG1853|consen   50 LESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKE---QLRKYIRELEQANDDLER  126 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccHHHH
Confidence            44455666666666666666666666666666555554444433333333333332222   222223333333223322


Q ss_pred             -------HHHhHHHHHHHHHHHHHHHHHHHHhHHHhH
Q psy5576          94 -------ELHGLKSELHGLKSELHGLKSELHGLKSEL  123 (156)
Q Consensus        94 -------~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i  123 (156)
                             -+.++.+.+...-.+..-|+.++++.+.-+
T Consensus       127 akRati~sleDfeqrLnqAIErnAfLESELdEke~ll  163 (333)
T KOG1853|consen  127 AKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLL  163 (333)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence                   223555555555555555665555555443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=91.27  E-value=7.8  Score=32.34  Aligned_cols=32  Identities=31%  Similarity=0.434  Sum_probs=13.9

Q ss_pred             HHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhH
Q psy5576         111 GLKSELHGLKSELHGLKSELHGLKSELHGLKS  142 (156)
Q Consensus       111 ~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~  142 (156)
                      .|..++..++..+..++..+.....++..+..
T Consensus       199 eL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~  230 (617)
T PF15070_consen  199 ELQKKLGELQEKLHNLKEKLELKSQEAQSLQE  230 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            34444444444444444444444444444433

>KOG4302|consensus

Probab=91.24  E-value=4.1  Score=34.02  Aligned_cols=39  Identities=23%  Similarity=0.289  Sum_probs=21.0

Q ss_pred             HHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHh
Q psy5576         114 SELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTY  152 (156)
Q Consensus       114 ~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  152 (156)
                      ..++++...+..+.++...--..+..+...+-.+|...-
T Consensus       160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg  198 (660)
T KOG4302|consen  160 EKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLG  198 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            445555555555555555555555555555555555443

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=91.07  E-value=3.1  Score=27.42  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHhHHHhHHhHHHhHhhHH
Q psy5576         108 ELHGLKSELHGLKSELHGLKSELHGLK  134 (156)
Q Consensus       108 ~l~~l~~~~~~~~~~i~~l~~~~~~~~  134 (156)
                      ++..+...+..+...+..+...+..+.
T Consensus       102 ~~~~l~~~~~~l~~~l~~~~~~~~~~~  128 (140)
T PRK03947        102 RKEELEKALEKLEEALQKLASRIAQLA  128 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=91.07  E-value=4.5  Score=29.21  Aligned_cols=42  Identities=21%  Similarity=0.389  Sum_probs=16.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhH
Q psy5576          89 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL  130 (156)
Q Consensus        89 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~  130 (156)
                      ..+......+...+..+......|...+..+...|.+++...
T Consensus        95 ~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~  136 (225)
T COG1842          95 QSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKK  136 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333444444444444444444444444443333

>KOG0288|consensus

Probab=90.26  E-value=7.6  Score=30.52  Aligned_cols=33  Identities=24%  Similarity=0.252  Sum_probs=12.5

Q ss_pred             HhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHH
Q psy5576           8 KSELDGLKSELHGLKSELHGLKSELHGLKSELH   40 (156)
Q Consensus         8 ~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~   40 (156)
                      ...+.++...++...+....+..+...++.+..
T Consensus        12 dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~   44 (459)
T KOG0288|consen   12 DQRLIDLNTELAQCEKAQSRLSAQLVILRAESR   44 (459)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444333333333333333333333

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=90.21  E-value=6  Score=29.31  Aligned_cols=54  Identities=28%  Similarity=0.367  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576          87 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL  140 (156)
Q Consensus        87 e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l  140 (156)
                      .+.++..+...+...+.....+++..+..+..++.--.....+.+.++.++..+
T Consensus       184 ~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l  237 (267)
T PF10234_consen  184 QLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL  237 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333344444444443344444444444444443

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=90.04  E-value=2.1  Score=23.71  Aligned_cols=19  Identities=37%  Similarity=0.532  Sum_probs=7.0

Q ss_pred             HhHHHHHHHHHHhHHhHHH
Q psy5576          12 DGLKSELHGLKSELHGLKS   30 (156)
Q Consensus        12 ~~l~~~l~~~~~~~~~~~~   30 (156)
                      +.|..++..+..++..+..
T Consensus         6 d~Ls~dVq~L~~kvdqLs~   24 (56)
T PF04728_consen    6 DQLSSDVQTLNSKVDQLSS   24 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=90.02  E-value=7.1  Score=29.82  Aligned_cols=48  Identities=23%  Similarity=0.301  Sum_probs=19.5

Q ss_pred             HhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhH
Q psy5576          51 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL   98 (156)
Q Consensus        51 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~   98 (156)
                      ...+.++.-+..+..+-..++.++..+..+..+.+.+-..+..++++.
T Consensus       127 ~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~  174 (401)
T PF06785_consen  127 GDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA  174 (401)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            333333333444444444444444444444444444444444444333

>KOG2264|consensus

Probab=89.77  E-value=2.6  Score=34.55  Aligned_cols=30  Identities=23%  Similarity=0.397  Sum_probs=10.8

Q ss_pred             HHhHHHhHHhhHHhHHHHHHhHHhhHHHHH
Q psy5576          60 LHGLKSELHGLKSELHGLKSELHGLKSELH   89 (156)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~   89 (156)
                      +..+...++.++..+.+.+.++..++.+++
T Consensus       109 I~~~n~kiEelk~~i~~~q~eL~~Lk~~ie  138 (907)
T KOG2264|consen  109 IEEINTKIEELKRLIPQKQLELSALKGEIE  138 (907)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHhHHH
Confidence            333333333333333333333333333333

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=89.60  E-value=7.5  Score=29.48  Aligned_cols=22  Identities=18%  Similarity=0.341  Sum_probs=8.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHh
Q psy5576          97 GLKSELHGLKSELHGLKSELHG  118 (156)
Q Consensus        97 ~~~~~~~~l~~~l~~l~~~~~~  118 (156)
                      .+..++..+...+..|+.+...
T Consensus       241 tfk~Emekm~Kk~kklEKE~~~  262 (309)
T PF09728_consen  241 TFKKEMEKMSKKIKKLEKENQT  262 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF13166 AAA_13: AAA domain

Probab=89.41  E-value=12  Score=31.54  Aligned_cols=27  Identities=26%  Similarity=0.514  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHhHHHhHHhHHHhHhhHH
Q psy5576         108 ELHGLKSELHGLKSELHGLKSELHGLK  134 (156)
Q Consensus       108 ~l~~l~~~~~~~~~~i~~l~~~~~~~~  134 (156)
                      .+..+...+..+...+..+...+..+.
T Consensus       425 ~i~~~~~~~~~~~~~~~~~~~~i~~l~  451 (712)
T PF13166_consen  425 EINSLEKKLKKAKEEIKKIEKEIKELE  451 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444444444433333

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=89.08  E-value=6.1  Score=27.72  Aligned_cols=109  Identities=17%  Similarity=0.253  Sum_probs=61.5

Q ss_pred             HHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhH
Q psy5576          19 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL   98 (156)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~   98 (156)
                      .....-++.++..+...+..+......+...+................+..+..-+......+.....-..+...++.+.
T Consensus        63 ~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK  142 (188)
T PF05335_consen   63 AGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEK  142 (188)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555555555555555555555555555555666666666655555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhHHhHH
Q psy5576          99 KSELHGLKSELHGLKSELHGLKSELHGLK  127 (156)
Q Consensus        99 ~~~~~~l~~~l~~l~~~~~~~~~~i~~l~  127 (156)
                      ...+.....+...|..++.....+++..+
T Consensus       143 ~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk  171 (188)
T PF05335_consen  143 TQLLEAAKRRVEELQRQLQAARADYEKTK  171 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555554443

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=88.89  E-value=7.6  Score=28.62  Aligned_cols=41  Identities=20%  Similarity=0.332  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHh
Q psy5576         103 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE  143 (156)
Q Consensus       103 ~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~  143 (156)
                      -.....-..+...+......|.++...+..+..++..+...
T Consensus       182 ~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~  222 (258)
T PF15397_consen  182 LQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQ  222 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33344444677777777888888888888888777777654

>KOG4603|consensus

Probab=88.64  E-value=6.1  Score=27.18  Aligned_cols=69  Identities=23%  Similarity=0.417  Sum_probs=0.0

Q ss_pred             HhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576          72 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH--GLKSELHGLKSELHGLKSELHGLKSELHGL  140 (156)
Q Consensus        72 ~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~--~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l  140 (156)
                      .++..+...+..+......+....+....++..|...+.  .++.++.+++.+.....+++..+..-...+
T Consensus        79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~v  149 (201)
T KOG4603|consen   79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHV  149 (201)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=88.07  E-value=13  Score=30.30  Aligned_cols=77  Identities=21%  Similarity=0.328  Sum_probs=37.8

Q ss_pred             hHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhh
Q psy5576          70 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGL  146 (156)
Q Consensus        70 ~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~  146 (156)
                      +..++..+...+..+...+..-....+.++..+......+..++.........+..+.+.=...+..+..+...+..
T Consensus       352 ~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~e  428 (570)
T COG4477         352 FEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHE  428 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444455555555555555555555555555555555555555555555444433

>KOG4809|consensus

Probab=87.83  E-value=14  Score=30.28  Aligned_cols=65  Identities=28%  Similarity=0.310  Sum_probs=25.4

Q ss_pred             HHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHH
Q psy5576          18 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH   82 (156)
Q Consensus        18 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (156)
                      |+......+.+...+..++.++.+....+..++.....+....-.....+..++-.+++.+.+..
T Consensus       333 Ie~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~  397 (654)
T KOG4809|consen  333 IESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECS  397 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence            33333344444444444444333333333333333333333333333333333333333333333

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=87.51  E-value=17  Score=31.00  Aligned_cols=27  Identities=19%  Similarity=0.279  Sum_probs=14.1

Q ss_pred             HHhHHHHHHHHHHhHHhHHHHHHHHHH
Q psy5576          11 LDGLKSELHGLKSELHGLKSELHGLKS   37 (156)
Q Consensus        11 i~~l~~~l~~~~~~~~~~~~~~~~~~~   37 (156)
                      .+-+..++..+..++...+.++...+.
T Consensus       196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~  222 (754)
T TIGR01005       196 ADFLAPEIADLSKQSRDAEAEVAAYRA  222 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=87.51  E-value=5.1  Score=25.04  Aligned_cols=32  Identities=19%  Similarity=0.383  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHH
Q psy5576         106 KSELHGLKSELHGLKSELHGLKSELHGLKSEL  137 (156)
Q Consensus       106 ~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~  137 (156)
                      ...+..+...+..++..+..+...+.++...+
T Consensus        69 e~~~e~le~~i~~l~~~~~~l~~~~~elk~~l  100 (105)
T cd00632          69 KERLETIELRIKRLERQEEDLQEKLKELQEKI  100 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444444444444443333

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>KOG0963|consensus

Probab=87.50  E-value=15  Score=30.42  Aligned_cols=30  Identities=33%  Similarity=0.416  Sum_probs=14.0

Q ss_pred             HHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576         111 GLKSELHGLKSELHGLKSELHGLKSELHGL  140 (156)
Q Consensus       111 ~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l  140 (156)
                      ....++..+..++......+..+...++..
T Consensus       314 ~~~~qI~~le~~l~~~~~~leel~~kL~~~  343 (629)
T KOG0963|consen  314 KHKAQISALEKELKAKISELEELKEKLNSR  343 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            333444444444444444455554444443

>KOG1962|consensus

Probab=87.28  E-value=5.1  Score=28.66  Aligned_cols=39  Identities=26%  Similarity=0.394  Sum_probs=14.4

Q ss_pred             hhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHH
Q psy5576          54 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK   92 (156)
Q Consensus        54 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~   92 (156)
                      ..++.++......++........+..+.+.+..+.+.+-
T Consensus       161 ~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLl  199 (216)
T KOG1962|consen  161 EKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLL  199 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence            333333333333333333333333333333333333333

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=87.25  E-value=6  Score=25.54  Aligned_cols=42  Identities=19%  Similarity=0.302  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576          99 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL  140 (156)
Q Consensus        99 ~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l  140 (156)
                      ..-+.++..+.+.++-++.-++.....+..++..+...+..+
T Consensus        69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~  110 (119)
T COG1382          69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA  110 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555555555555554443

>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this

Probab=87.22  E-value=12  Score=28.76  Aligned_cols=52  Identities=23%  Similarity=0.293  Sum_probs=25.5

Q ss_pred             HhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhh
Q psy5576           8 KSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE   59 (156)
Q Consensus         8 ~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~   59 (156)
                      .++.+++.++..++++.......+++++..-.......+...+..+.++...
T Consensus         3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~s   54 (330)
T PF07851_consen    3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKS   54 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555555555555555554444444444444443333333

; GO: 0016021 integral to membrane

>PRK09343 prefoldin subunit beta; Provisional

Probab=86.97  E-value=6.3  Score=25.47  Aligned_cols=39  Identities=18%  Similarity=0.250  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576         102 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL  140 (156)
Q Consensus       102 ~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l  140 (156)
                      +..+..+++-++..+..++.....+...+.++...+..+
T Consensus        73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l  111 (121)
T PRK09343         73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM  111 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444555555555555555555555444444

>PF14817 HAUS5: HAUS augmin-like complex subunit 5

Probab=86.90  E-value=17  Score=30.53  Aligned_cols=48  Identities=17%  Similarity=0.351  Sum_probs=27.1

Q ss_pred             chhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhH
Q psy5576           2 RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL   49 (156)
Q Consensus         2 ~~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   49 (156)
                      .+|..+..+|+.|..+|..+...+...+.++..-.........++.+.
T Consensus        79 ~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~  126 (632)
T PF14817_consen   79 RRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDS  126 (632)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355566666666666666666666666655555555554444444433

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=86.89  E-value=14  Score=29.52  Aligned_cols=36  Identities=22%  Similarity=0.298  Sum_probs=13.8

Q ss_pred             hhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHH
Q psy5576          44 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS   79 (156)
Q Consensus        44 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   79 (156)
                      ..+..++..+.+...+...+..++..++...-.++.
T Consensus       397 e~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQE  432 (527)
T PF15066_consen  397 EALANTQKHLQESRNEKETLQLELKKIKANYVHLQE  432 (527)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHH
Confidence            333333333333333333333344444433333333

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=86.72  E-value=18  Score=30.48  Aligned_cols=29  Identities=21%  Similarity=0.312  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhHHhH
Q psy5576          98 LKSELHGLKSELHGLKSELHGLKSELHGL  126 (156)
Q Consensus        98 ~~~~~~~l~~~l~~l~~~~~~~~~~i~~l  126 (156)
                      +...+..-..++..+...++.++.++..+
T Consensus       620 LKKk~~aE~kq~~~~eikVn~L~~E~e~~  648 (786)
T PF05483_consen  620 LKKKITAESKQSNVYEIKVNKLQEELENL  648 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333444444333333

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=86.70  E-value=6  Score=25.00  Aligned_cols=33  Identities=21%  Similarity=0.368  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHH
Q psy5576         105 LKSELHGLKSELHGLKSELHGLKSELHGLKSEL  137 (156)
Q Consensus       105 l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~  137 (156)
                      +..++..++..+..++..+..+...+.++...+
T Consensus        72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l  104 (110)
T TIGR02338        72 LKEKKETLELRVKTLQRQEERLREQLKELQEKI  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444444444444333

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=86.67  E-value=11  Score=28.04  Aligned_cols=23  Identities=22%  Similarity=0.368  Sum_probs=10.2

Q ss_pred             HhhHHHHHHHHHHHHhHHHHHHH
Q psy5576          82 HGLKSELHGLKSELHGLKSELHG  104 (156)
Q Consensus        82 ~~~~~e~~~l~~~~~~~~~~~~~  104 (156)
                      .+...+|.++.+.+..+...+.+
T Consensus       120 KEARkEIkQLkQvieTmrssL~e  142 (305)
T PF15290_consen  120 KEARKEIKQLKQVIETMRSSLAE  142 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhch
Confidence            33344445555444444444443

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=85.84  E-value=18  Score=29.57  Aligned_cols=55  Identities=18%  Similarity=0.333  Sum_probs=23.2

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHH
Q psy5576          84 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH  138 (156)
Q Consensus        84 ~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~  138 (156)
                      +..++.++.+.+......+..-....+.+...+..+...+........++...+.
T Consensus       352 ~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~  406 (570)
T COG4477         352 FEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLT  406 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3334444444444444444443444444444444444444444444444443333

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=85.59  E-value=10  Score=26.62  Aligned_cols=60  Identities=30%  Similarity=0.413  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhh
Q psy5576          85 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL  144 (156)
Q Consensus        85 ~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~  144 (156)
                      ..+...++..+..++..+..+..+...+.........+|..++.....+...+..+.-++
T Consensus       123 ~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F  182 (190)
T PF05266_consen  123 EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEF  182 (190)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455555555555555555555555556666666666666666666666555444

>KOG0998|consensus

Probab=85.56  E-value=3.5  Score=35.61  Aligned_cols=86  Identities=21%  Similarity=0.284  Sum_probs=34.2

Q ss_pred             hHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHH
Q psy5576          10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH   89 (156)
Q Consensus        10 ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~   89 (156)
                      ++..+......+.........++..+..........+...+......-.-+..+...+..+...+.....++..+..+++
T Consensus       436 ~l~~~~s~~~~l~~~~~~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~ei~~~~~~ln  515 (847)
T KOG0998|consen  436 ELSNLASTSQQLPAQKDTVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNLLPLQLSNDNREISSLEKELN  515 (847)
T ss_pred             hhhhcchhhhccccccchhhhhhhhhhhhhhHHHhhhhhhhhhhhccccccccccchhhhcccccccchhhHHHHHHHHh
Confidence            33333333344433333333344444444444444444444444443333333333333333333333333333333333


Q ss_pred             HHHHHH
Q psy5576          90 GLKSEL   95 (156)
Q Consensus        90 ~l~~~~   95 (156)
                      .+..+.
T Consensus       516 ~~~qq~  521 (847)
T KOG0998|consen  516 ELQQQL  521 (847)
T ss_pred             hhHHHH
Confidence            333333

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=85.41  E-value=10  Score=26.43  Aligned_cols=34  Identities=35%  Similarity=0.518  Sum_probs=15.9

Q ss_pred             HHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhh
Q psy5576         111 GLKSELHGLKSELHGLKSELHGLKSELHGLKSEL  144 (156)
Q Consensus       111 ~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~  144 (156)
                      ....++..++.++.....+...+..+.+.+..+|
T Consensus       158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey  191 (192)
T PF05529_consen  158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY  191 (192)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3344444444444444444444445555555544

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=85.27  E-value=7  Score=24.43  Aligned_cols=20  Identities=35%  Similarity=0.582  Sum_probs=7.6

Q ss_pred             HHHhHHHhHHhHHHhHhhHH
Q psy5576         115 ELHGLKSELHGLKSELHGLK  134 (156)
Q Consensus       115 ~~~~~~~~i~~l~~~~~~~~  134 (156)
                      +...+..++..+...+..+.
T Consensus        75 e~~~lk~~i~~le~~~~~~e   94 (108)
T PF02403_consen   75 EVKELKEEIKELEEQLKELE   94 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=85.13  E-value=13  Score=27.32  Aligned_cols=29  Identities=24%  Similarity=0.327  Sum_probs=11.8

Q ss_pred             HhhHHhHHHHHHHHHHhHHhHHHHHHHHH
Q psy5576           8 KSELDGLKSELHGLKSELHGLKSELHGLK   36 (156)
Q Consensus         8 ~~ei~~l~~~l~~~~~~~~~~~~~~~~~~   36 (156)
                      +.++..+..++.+...-+..++..+..+.
T Consensus         5 q~~l~~l~~~~~~~~~L~~kLE~DL~~~~   33 (248)
T PF08172_consen    5 QKELSELEAKLEEQKELNAKLENDLAKVQ   33 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444444444444444444433333

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PRK02119 hypothetical protein; Provisional

Probab=85.05  E-value=5.7  Score=23.24  Aligned_cols=25  Identities=16%  Similarity=0.206  Sum_probs=9.0

Q ss_pred             HHHHHHHHHhHHHhHHhHHHhHhhH
Q psy5576         109 LHGLKSELHGLKSELHGLKSELHGL  133 (156)
Q Consensus       109 l~~l~~~~~~~~~~i~~l~~~~~~~  133 (156)
                      +..|+.-+......|..+...+..+
T Consensus        25 ie~LN~~v~~Qq~~id~L~~ql~~L   49 (73)
T PRK02119         25 LEELNQALIEQQFVIDKMQVQLRYM   49 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333

>KOG4302|consensus

Probab=85.00  E-value=15  Score=30.82  Aligned_cols=39  Identities=31%  Similarity=0.401  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhh
Q psy5576         107 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELG  145 (156)
Q Consensus       107 ~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~  145 (156)
                      .++..+...+..+..+...-...+..+...+..+-...+
T Consensus       160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg  198 (660)
T KOG4302|consen  160 EKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLG  198 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            455566666666666666665666666665555554443

>KOG2751|consensus

Probab=85.00  E-value=17  Score=28.74  Aligned_cols=92  Identities=23%  Similarity=0.233  Sum_probs=47.9

Q ss_pred             HHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHh
Q psy5576          60 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG  139 (156)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~  139 (156)
                      ...+..+.+++..+-.++-.++..+..+-.++...+...+.....+.++-...-........+.-.....+..+...+..
T Consensus       178 ~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~  257 (447)
T KOG2751|consen  178 EEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEY  257 (447)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Confidence            33344444444444444444444444445555555555555555555555555555555555555555666666666666


Q ss_pred             hhHhhhhhhhhH
Q psy5576         140 LKSELGLNCYLT  151 (156)
Q Consensus       140 l~~~~~~~~~~~  151 (156)
                      ....++.|.+.-
T Consensus       258 s~~qldkL~ktN  269 (447)
T KOG2751|consen  258 SQAQLDKLRKTN  269 (447)
T ss_pred             HHHHHHHHHhhh
Confidence            666666655543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=84.77  E-value=10  Score=28.02  Aligned_cols=59  Identities=14%  Similarity=0.218  Sum_probs=32.6

Q ss_pred             HHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHH
Q psy5576          33 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL   91 (156)
Q Consensus        33 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l   91 (156)
                      ..+...+..-...+.++..++..+..++.+++..++....++.++..+...+-.+++.+
T Consensus        43 ~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r  101 (263)
T PRK10803         43 TQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL  101 (263)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344455566666666666666666666666666666555555555544

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=84.42  E-value=10  Score=27.99  Aligned_cols=14  Identities=14%  Similarity=0.347  Sum_probs=5.0

Q ss_pred             HHHHHHhHHHhHHh
Q psy5576         112 LKSELHGLKSELHG  125 (156)
Q Consensus       112 l~~~~~~~~~~i~~  125 (156)
                      |..+++....++..
T Consensus        73 LrG~~E~~~~~l~~   86 (263)
T PRK10803         73 LRGQIQENQYQLNQ   86 (263)
T ss_pred             HhhHHHHHHHHHHH
Confidence            33333333333333

>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12)

Probab=84.04  E-value=16  Score=27.61  Aligned_cols=11  Identities=45%  Similarity=0.661  Sum_probs=4.3

Q ss_pred             hhHHhHHHHHH
Q psy5576           9 SELDGLKSELH   19 (156)
Q Consensus         9 ~ei~~l~~~l~   19 (156)
                      ..|+++...+.
T Consensus        55 ~~ld~~~~kl~   65 (301)
T PF06120_consen   55 DSLDELKEKLK   65 (301)
T ss_pred             HhhHHHHHHHH
Confidence            33344443333

>KOG0288|consensus

Probab=84.04  E-value=19  Score=28.41  Aligned_cols=54  Identities=26%  Similarity=0.296  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhH
Q psy5576          14 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL   67 (156)
Q Consensus        14 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~   67 (156)
                      +.+.+.++...+....+....+..+...+......+...+...+..+.++..+.
T Consensus        11 ~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~   64 (459)
T KOG0288|consen   11 NDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEEN   64 (459)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444443333333333333333333333333333

>KOG3385|consensus

Probab=83.93  E-value=5.7  Score=25.42  Aligned_cols=53  Identities=21%  Similarity=0.409  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhhHhhhcC
Q psy5576          99 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYLTYFLFV  156 (156)
Q Consensus        99 ~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  156 (156)
                      -.++..-..=+..+....+....-+...-.++..+.+.     ..+.++||++.|++|
T Consensus        56 g~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-----sg~~l~~~m~~f~lV  108 (118)
T KOG3385|consen   56 GDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-----SGISLLCWMAVFSLV  108 (118)
T ss_pred             ccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-----CCcchHHHHHHHHHH
Confidence            33444444555566666666666666666666666655     567799999888765

>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6

Probab=83.89  E-value=6  Score=22.52  Aligned_cols=25  Identities=32%  Similarity=0.571  Sum_probs=11.0

Q ss_pred             hhHHhHHHHHHHHHHhHHhHHHHHH
Q psy5576           9 SELDGLKSELHGLKSELHGLKSELH   33 (156)
Q Consensus         9 ~ei~~l~~~l~~~~~~~~~~~~~~~   33 (156)
                      .++..|..++..+...+..+...+.
T Consensus         4 ~E~~rL~Kel~kl~~~i~~~~~kL~   28 (66)
T PF10458_consen    4 AEIERLEKELEKLEKEIERLEKKLS   28 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3444444444444444444444433

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=83.64  E-value=9.3  Score=24.52  Aligned_cols=18  Identities=50%  Similarity=0.643  Sum_probs=6.5

Q ss_pred             HhHHHhHHhHHHhHhhHH
Q psy5576         117 HGLKSELHGLKSELHGLK  134 (156)
Q Consensus       117 ~~~~~~i~~l~~~~~~~~  134 (156)
                      ..+...+..+...+..+.
T Consensus        84 ~~l~~~l~~l~~~~~k~e  101 (126)
T PF13863_consen   84 KKLKAELEELKSEISKLE  101 (126)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>KOG4673|consensus

Probab=83.58  E-value=26  Score=29.68  Aligned_cols=65  Identities=18%  Similarity=0.130  Sum_probs=30.5

Q ss_pred             hHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhh
Q psy5576          80 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL  144 (156)
Q Consensus        80 ~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~  144 (156)
                      .+..+..+.+.+...+.....--..+...+..+.+.....+..+......+..+......++..+
T Consensus       496 ~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~  560 (961)
T KOG4673|consen  496 LITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATN  560 (961)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence            34444444444444444333333334444445555555555555555555555554444444433

>KOG1899|consensus

Probab=83.38  E-value=26  Score=29.39  Aligned_cols=76  Identities=16%  Similarity=0.219  Sum_probs=34.1

Q ss_pred             HHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHH
Q psy5576          17 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK   92 (156)
Q Consensus        17 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~   92 (156)
                      ++..+..++.....++..++.-+..-..++...++.+++--.....++.+.-.+-.++..++-.+..++.+..+.+
T Consensus       126 QvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E  201 (861)
T KOG1899|consen  126 QVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETE  201 (861)
T ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHH
Confidence            4444444555555555555555554455554444444443333344444444444444444444444443333333

>KOG2991|consensus

Probab=83.22  E-value=16  Score=26.94  Aligned_cols=7  Identities=14%  Similarity=0.316  Sum_probs=2.5

Q ss_pred             HhHhhHH
Q psy5576         128 SELHGLK  134 (156)
Q Consensus       128 ~~~~~~~  134 (156)
                      ..+..-+
T Consensus       285 q~Lketr  291 (330)
T KOG2991|consen  285 QKLKETR  291 (330)
T ss_pred             HHHHHHH
Confidence            3333333

>PF15188 CCDC-167: Coiled-coil domain-containing protein 167

Probab=82.99  E-value=8.1  Score=23.38  Aligned_cols=15  Identities=33%  Similarity=0.328  Sum_probs=5.4

Q ss_pred             hHHHhHHhHHHhHhh
Q psy5576         118 GLKSELHGLKSELHG  132 (156)
Q Consensus       118 ~~~~~i~~l~~~~~~  132 (156)
                      .+...+.....++..
T Consensus        47 ~l~~~l~~~E~eL~~   61 (85)
T PF15188_consen   47 ELKEKLENNEKELKL   61 (85)
T ss_pred             HHHHHhhccHHHHHH
Confidence            333333333333333

>PF15294 Leu_zip: Leucine zipper

Probab=82.16  E-value=19  Score=26.94  Aligned_cols=45  Identities=27%  Similarity=0.359  Sum_probs=25.7

Q ss_pred             HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHH
Q psy5576           7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS   51 (156)
Q Consensus         7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   51 (156)
                      +..+|..|..+-+.+...+..++......-.+-..+...+..++.
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~  174 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD  174 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666666666655555555555555555554444

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=81.92  E-value=39  Score=30.46  Aligned_cols=50  Identities=12%  Similarity=0.054  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhhh
Q psy5576         101 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCYL  150 (156)
Q Consensus       101 ~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~  150 (156)
                      ....+...+.....+++.+..+-...+..+..+......+++.+.|++--
T Consensus       266 ~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S  315 (1109)
T PRK10929        266 INRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVS  315 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            34445555555556666666666666666666666666677777776643

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=81.34  E-value=7.6  Score=21.92  Aligned_cols=27  Identities=26%  Similarity=0.417  Sum_probs=10.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHhH
Q psy5576          97 GLKSELHGLKSELHGLKSELHGLKSEL  123 (156)
Q Consensus        97 ~~~~~~~~l~~~l~~l~~~~~~~~~~i  123 (156)
                      .+...+.+.+.+...|..++..+..++
T Consensus        29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~   55 (61)
T PF08826_consen   29 AFESKLQEAEKRNRELEQEIERLKKEM   55 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=81.31  E-value=19  Score=26.47  Aligned_cols=18  Identities=17%  Similarity=0.373  Sum_probs=6.4

Q ss_pred             hhhhHhhHHhHHHhHHhh
Q psy5576          53 LHGLKSELHGLKSELHGL   70 (156)
Q Consensus        53 ~~~l~~~~~~~~~~~~~~   70 (156)
                      ...+...+..+...+..+
T Consensus        89 a~~L~~~i~~l~~~i~~l  106 (264)
T PF06008_consen   89 AQDLEQFIQNLQDNIQEL  106 (264)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>COG5283 Phage-related tail protein [Function unknown]

Probab=81.28  E-value=41  Score=30.32  Aligned_cols=75  Identities=15%  Similarity=0.220  Sum_probs=28.9

Q ss_pred             hHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhH
Q psy5576          24 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL   98 (156)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~   98 (156)
                      .+...+.-+..+.++..++.......+..+.++..++......+..+-.++.....++..-+.++..+...++.+
T Consensus        65 ameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t  139 (1213)
T COG5283          65 AMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTL  139 (1213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhh
Confidence            333333333334444444433333334444444333333333333333333333333333333444444444333

>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []

Probab=81.20  E-value=5.1  Score=25.06  Aligned_cols=7  Identities=43%  Similarity=0.639  Sum_probs=2.5

Q ss_pred             HHHhHHh
Q psy5576          35 LKSELHG   41 (156)
Q Consensus        35 ~~~~~~~   41 (156)
                      +..++..
T Consensus        20 ie~ElEe   26 (100)
T PF06428_consen   20 IESELEE   26 (100)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=80.72  E-value=8.7  Score=22.21  Aligned_cols=19  Identities=21%  Similarity=0.281  Sum_probs=7.3

Q ss_pred             HhhHHHHHHhhhHhhhhhh
Q psy5576         130 LHGLKSELHGLKSELGLNC  148 (156)
Q Consensus       130 ~~~~~~~~~~l~~~~~~~~  148 (156)
                      +..+...+..+....-|+.
T Consensus        36 i~~~~~~l~~I~~n~kW~~   54 (71)
T PF10779_consen   36 IKNLNKQLEKIKSNTKWIW   54 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333433

>KOG1853|consensus

Probab=80.38  E-value=21  Score=26.33  Aligned_cols=15  Identities=20%  Similarity=0.215  Sum_probs=5.4

Q ss_pred             hhhhHhhHHhHHHhH
Q psy5576          53 LHGLKSELHGLKSEL   67 (156)
Q Consensus        53 ~~~l~~~~~~~~~~~   67 (156)
                      ..++....+++..+.
T Consensus        61 nrdl~t~nqrl~~E~   75 (333)
T KOG1853|consen   61 NRDLETRNQRLTTEQ   75 (333)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B

Probab=80.16  E-value=15  Score=24.42  Aligned_cols=18  Identities=28%  Similarity=0.464  Sum_probs=0.0

Q ss_pred             HHHhHHhHHHhHhhHHHH
Q psy5576         119 LKSELHGLKSELHGLKSE  136 (156)
Q Consensus       119 ~~~~i~~l~~~~~~~~~~  136 (156)
                      +..+-+.+...+..+...
T Consensus       105 l~~eEe~L~~~le~l~~~  122 (141)
T PF13874_consen  105 LSPEEEELRKRLEALEAQ  122 (141)
T ss_dssp             ------------------
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            333333333334333333

>KOG0998|consensus

Probab=80.14  E-value=5.8  Score=34.36  Aligned_cols=59  Identities=19%  Similarity=0.246  Sum_probs=21.9

Q ss_pred             hhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHH
Q psy5576          44 SELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL  102 (156)
Q Consensus        44 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~  102 (156)
                      ..+...+..+..........-.-+.++...+..+...+.....++..+...+..+....
T Consensus       463 ~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~ei~~~~~~ln~~~qq~  521 (847)
T KOG0998|consen  463 AQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNLLPLQLSNDNREISSLEKELNELQQQL  521 (847)
T ss_pred             hhhhHHHhhhhhhhhhhhccccccccccchhhhcccccccchhhHHHHHHHHhhhHHHH
Confidence            33333333333333333333333333333333333333333334444443333333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-07

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 27/143 (18%), Positives = 62/143 (43%), Gaps = 4/143 (2%)

Query: 2    RRKEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH 61
             R E+ +     L++E   ++ ++  L+ +L   ++    L+ E      ++  ++ ++ 
Sbjct: 934  ARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDIL 993

Query: 62   GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS 121
             ++ + + L  E   L+  +  L + L    +E       L  LK++   + SEL     
Sbjct: 994  IMEDQNNKLTKERKLLEERVSDLTTNL----AEEEEKAKNLTKLKNKHESMISELEVRLK 1049

Query: 122  ELHGLKSELHGLKSELHGLKSEL 144
            +    + EL  +K +L G  S+L
Sbjct: 1050 KEEKSRQELEKIKRKLEGESSDL 1072

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	98.61
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	98.35
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	98.28
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.06
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.93
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.83
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	97.65
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.55
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	97.37
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.31
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	97.26
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	97.06
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.77
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	96.64
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	96.53
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	96.24
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	96.18
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	95.98
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	95.83
3l4q_C	170	Phosphatidylinositol 3-kinase regulatory subunit b	95.63
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	95.43
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	95.23
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	95.18
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	95.14
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	94.7
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	94.52
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	93.97
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	93.93
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	93.7
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	93.63
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	93.27
2xzr_A	114	Immunoglobulin-binding protein EIBD; cell adhesion	92.21
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	92.17
3l4q_C	170	Phosphatidylinositol 3-kinase regulatory subunit b	90.64
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	90.63
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	90.56
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	90.14
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	90.09
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	89.99
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	89.35
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	88.68
2xzr_A	114	Immunoglobulin-binding protein EIBD; cell adhesion	87.67
3c9i_A	242	Tail needle protein GP26; xenon, coiled-coil, prot	86.03
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	85.89
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	85.66
1jcd_A	52	Major outer membrane lipoprotein; protein folding,	85.45
2nrj_A	346	HBL B protein; enterotoxin, hemolysis, transmembra	84.7
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	84.44
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	84.28
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	83.99
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	83.01
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	82.26
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	82.15
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	81.15
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	80.47
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	80.08

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=98.61  E-value=1.2e-05  Score=57.82  Aligned_cols=125  Identities=19%  Similarity=0.266  Sum_probs=71.7

Q ss_pred             hhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHH--hHHhhHH
Q psy5576           9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS--ELHGLKS   86 (156)
Q Consensus         9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~   86 (156)
                      .+|..+...+..++..+..+...+..+...+..+...+..+...+..++..+......+...+..+.....  ++..+..
T Consensus        18 ~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~k   97 (256)
T 3na7_A           18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNI   97 (256)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            45555556666666666666666666666666666666666666666666666666666666655544322  4555555


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhH
Q psy5576          87 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL  133 (156)
Q Consensus        87 e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~  133 (156)
                      ++..+...+..+...+..+...+..+...+..+...+..+...+...
T Consensus        98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~  144 (256)
T 3na7_A           98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALEL  144 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555554444444444333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=98.35  E-value=0.00018  Score=51.60  Aligned_cols=47  Identities=15%  Similarity=0.257  Sum_probs=19.5

Q ss_pred             HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhh
Q psy5576           7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL   53 (156)
Q Consensus         7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   53 (156)
                      +-.++..+...+..+...+..+...+..+...+..+...+......+
T Consensus        30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri   76 (256)
T 3na7_A           30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKI   76 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444443333333333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=98.28  E-value=0.00024  Score=47.23  Aligned_cols=132  Identities=16%  Similarity=0.174  Sum_probs=71.5

Q ss_pred             hhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHH
Q psy5576           9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL   88 (156)
Q Consensus         9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~   88 (156)
                      ..+..|..++.++...+..-......+++...++...+........++...+..+......+..++..+...+..-....
T Consensus         6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r   85 (168)
T 3o0z_A            6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDR   85 (168)
T ss_dssp             ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666666666666666666666666666666666666666666666666666666655555555544444


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhh
Q psy5576          89 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL  140 (156)
Q Consensus        89 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l  140 (156)
                      ......+.+++..+..+..++..+.........+...+...+..+..+...+
T Consensus        86 ~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~  137 (168)
T 3o0z_A           86 GHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNL  137 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4444444555555555555555555544444444444444444444444433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.07  E-value=2.8e-05  Score=66.73  Aligned_cols=38  Identities=24%  Similarity=0.275  Sum_probs=14.7

Q ss_pred             hHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHH
Q psy5576          10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH   47 (156)
Q Consensus        10 ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   47 (156)
                      ++..+..++..+...+..++..+..+...+..+..+..
T Consensus       858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~  895 (1184)
T 1i84_S          858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKN  895 (1184)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444333333333333333333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.06  E-value=2.6e-05  Score=67.00  Aligned_cols=87  Identities=17%  Similarity=0.187  Sum_probs=44.6

Q ss_pred             HHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhH
Q psy5576           6 KRKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK   85 (156)
Q Consensus         6 ~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (156)
                      .++.++..+...+..+...+..++..+..+..+...+...+......+......+..+..++..+...+..+..++....
T Consensus       861 ~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~e  940 (1184)
T 1i84_S          861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEE  940 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666666666666666666666655555555554444444444444444444444444444443333


Q ss_pred             HHHHHHH
Q psy5576          86 SELHGLK   92 (156)
Q Consensus        86 ~e~~~l~   92 (156)
                      ..+..+.
T Consensus       941 e~l~el~  947 (1184)
T 1i84_S          941 ERSQQLQ  947 (1184)
T ss_dssp             HC-----
T ss_pred             HHHHHHH
Confidence            3333333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.93  E-value=0.0015  Score=43.41  Aligned_cols=128  Identities=15%  Similarity=0.160  Sum_probs=61.8

Q ss_pred             HHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHH
Q psy5576           7 RKSELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS   86 (156)
Q Consensus         7 ~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (156)
                      |.++++++...+..-......+.+....+......+...+.++...+..+......+..++..+...+..-+........
T Consensus        11 LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se   90 (168)
T 3o0z_A           11 LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSE   90 (168)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666555555555555555555555555555555555555555555555555555555444444443333333


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHH
Q psy5576          87 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK  134 (156)
Q Consensus        87 e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~  134 (156)
                      -+.++...+..+..++..+......+..+...+...+..+.+....+.
T Consensus        91 ~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A           91 MIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            344444444444444444444444444444444444444444444443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.83  E-value=0.0027  Score=43.16  Aligned_cols=27  Identities=26%  Similarity=0.347  Sum_probs=10.5

Q ss_pred             hHHHhhhhhHhhHHhHHHhHHhhHHhH
Q psy5576          48 GLKSELHGLKSELHGLKSELHGLKSEL   74 (156)
Q Consensus        48 ~~~~~~~~l~~~~~~~~~~~~~~~~~~   74 (156)
                      .+.....++......+..++..++..+
T Consensus        53 ~~Ek~~~~L~~~~~~L~~E~e~~k~K~   79 (189)
T 2v71_A           53 QAEQRNRDLQADNQRLKYEVEALKEKL   79 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333334444433333333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=97.65  E-value=0.0047  Score=40.70  Aligned_cols=108  Identities=18%  Similarity=0.238  Sum_probs=54.2

Q ss_pred             HHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5576          42 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS  121 (156)
Q Consensus        42 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~  121 (156)
                      +...+......+..+...-......-..++.++..+...+.............+..++..+..++..+..-......+..
T Consensus        47 LEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~  126 (155)
T 2efr_A           47 LEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISE  126 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333444444444444444445555554444444444444555555555555555555555555555555


Q ss_pred             hHHhHHHhHhhHHHHHHhhhHhhhhhhh
Q psy5576         122 ELHGLKSELHGLKSELHGLKSELGLNCY  149 (156)
Q Consensus       122 ~i~~l~~~~~~~~~~~~~l~~~~~~~~~  149 (156)
                      .+...-..+..+......+.+++..+++
T Consensus       127 eLd~tl~el~~~~~~~~~~~~~~~~~~~  154 (155)
T 2efr_A          127 EMKQLEDKVEELLSKNYHLENEVARLKK  154 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHhhc
Confidence            5555555555555555556666555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.55  E-value=0.0028  Score=50.45  Aligned_cols=56  Identities=18%  Similarity=0.250  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhH
Q psy5576          87 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS  142 (156)
Q Consensus        87 e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~  142 (156)
                      +.......+.........++.+...++..+...+..+.+++.+......++..+.+
T Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~  579 (597)
T 3oja_B          524 ETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA  579 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333334333444444444444444444444444444444444433

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=97.37  E-value=0.0082  Score=36.77  Aligned_cols=85  Identities=14%  Similarity=0.153  Sum_probs=33.9

Q ss_pred             HhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHH
Q psy5576          26 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGL  105 (156)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l  105 (156)
                      ..++............+...+............++..+...+..++.++......+......+.............+..+
T Consensus        12 ~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L   91 (101)
T 3u1c_A           12 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASL   91 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333334444444444444444444444444444433333333333333333444444


Q ss_pred             HHHHH
Q psy5576         106 KSELH  110 (156)
Q Consensus       106 ~~~l~  110 (156)
                      ..++.
T Consensus        92 ~Rriq   96 (101)
T 3u1c_A           92 NRRIQ   96 (101)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.31  E-value=0.0095  Score=47.36  Aligned_cols=122  Identities=20%  Similarity=0.253  Sum_probs=56.7

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhh----hhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHH
Q psy5576          15 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH----GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG   90 (156)
Q Consensus        15 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~   90 (156)
                      ..++..+...+..++.+.......+......+......+.    ++......+...+..+....+........+...++.
T Consensus       455 ~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (597)
T 3oja_B          455 EAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADA  534 (597)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence            3344444444444444444444444444444333333222    222222334444444444444444444555555555


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHH
Q psy5576          91 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE  136 (156)
Q Consensus        91 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~  136 (156)
                      .......++.++..++..+...+..+.++..++..+..++..+...
T Consensus       535 ~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~  580 (597)
T 3oja_B          535 KQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK  580 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555555555555555555555443

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=97.26  E-value=0.016  Score=37.91  Aligned_cols=136  Identities=14%  Similarity=0.150  Sum_probs=59.7

Q ss_pred             hhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHH
Q psy5576           9 SELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL   88 (156)
Q Consensus         9 ~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~   88 (156)
                      +.|.-+..+++.....+.....++..+....+........+...-..-...+..+..++.....-.......+......+
T Consensus         3 Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl   82 (147)
T 2b9c_A            3 RRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKL   82 (147)
T ss_dssp             --------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            44555555555555555555666665555555554444444444333334444444444444444444444444444444


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhh
Q psy5576          89 HGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL  144 (156)
Q Consensus        89 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~  144 (156)
                      .-+...+.............+..|..++..+.+.+..+...-......-..+...+
T Consensus        83 ~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I  138 (147)
T 2b9c_A           83 VIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEV  138 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444433333333333333333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=97.06  E-value=0.028  Score=36.97  Aligned_cols=108  Identities=17%  Similarity=0.229  Sum_probs=72.6

Q ss_pred             HHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5576          35 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS  114 (156)
Q Consensus        35 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~  114 (156)
                      +...+.............+..+..++......+..++..-.........+..+|..+...++.........+..+..|+.
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk  105 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK  105 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555666666666666666666666666666666666666666777777777777777777777777777777777


Q ss_pred             HHHhHHHhHHhHHHhHhhHHHHHHhhhH
Q psy5576         115 ELHGLKSELHGLKSELHGLKSELHGLKS  142 (156)
Q Consensus       115 ~~~~~~~~i~~l~~~~~~~~~~~~~l~~  142 (156)
                      .++.+...+...+.....+...+...-.
T Consensus       106 ~id~lEd~L~~~Kek~~~i~~eLd~tl~  133 (155)
T 2efr_A          106 SIDDLEDELYAQKLKYKAISEEMKQLED  133 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777766666666666655433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.77  E-value=0.33  Score=45.95  Aligned_cols=11  Identities=18%  Similarity=0.223  Sum_probs=3.9

Q ss_pred             HHHHHHhHHhH
Q psy5576          18 LHGLKSELHGL   28 (156)
Q Consensus        18 l~~~~~~~~~~   28 (156)
                      ++.++.++...
T Consensus      1936 V~~l~~~L~~~ 1946 (3245)
T 3vkg_A         1936 VKDLQVSLAQK 1946 (3245)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=96.64  E-value=0.041  Score=32.59  Aligned_cols=13  Identities=23%  Similarity=0.539  Sum_probs=4.8

Q ss_pred             HHHHHHHhHHHhH
Q psy5576         111 GLKSELHGLKSEL  123 (156)
Q Consensus       111 ~l~~~~~~~~~~i  123 (156)
                      .|+.++..+..+|
T Consensus        67 dLE~kvesL~eEl   79 (86)
T 3swk_A           67 DLERKVESLQEEI   79 (86)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=96.53  E-value=0.049  Score=32.21  Aligned_cols=42  Identities=10%  Similarity=0.192  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhhhhhhh
Q psy5576         108 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELGLNCY  149 (156)
Q Consensus       108 ~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~  149 (156)
                      ....+++.+..+...+....-...++...++.+..++..+++
T Consensus        43 ~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk   84 (86)
T 3swk_A           43 QREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK   84 (86)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333445555555555555555555555666666665555554

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=96.24  E-value=0.12  Score=33.69  Aligned_cols=87  Identities=16%  Similarity=0.177  Sum_probs=35.0

Q ss_pred             hhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHh
Q psy5576          52 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH  131 (156)
Q Consensus        52 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~  131 (156)
                      .+..+..++.....-..............+..+..++.............+..++..+..+.+.+..+...-......-.
T Consensus        53 r~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~  132 (147)
T 2b9c_A           53 KMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNY  132 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH
Confidence            33333333333333333333333333333333444444444444444444444444444444444444444444443333


Q ss_pred             hHHHHHH
Q psy5576         132 GLKSELH  138 (156)
Q Consensus       132 ~~~~~~~  138 (156)
                      .+...+.
T Consensus       133 ~yee~I~  139 (147)
T 2b9c_A          133 HLENEVA  139 (147)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            3433333

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=96.18  E-value=0.078  Score=30.82  Aligned_cols=54  Identities=24%  Similarity=0.334  Sum_probs=23.2

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHH
Q psy5576          83 GLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE  136 (156)
Q Consensus        83 ~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~  136 (156)
                      -++.+++.+......+..+...+......+..+...+..+...+..++..+-..
T Consensus        24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk   77 (81)
T 2jee_A           24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333333333333334444444444444444444444444444444444433

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.83  E-value=0.061  Score=34.41  Aligned_cols=32  Identities=16%  Similarity=0.174  Sum_probs=11.6

Q ss_pred             HHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHh
Q psy5576          49 LKSELHGLKSELHGLKSELHGLKSELHGLKSE   80 (156)
Q Consensus        49 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (156)
                      ....+..+...+..-.......+.....+..+
T Consensus        44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~E   75 (135)
T 2e7s_A           44 RDDEVKRLREDIAKENELRTKAEEEADKLNKE   75 (135)
T ss_dssp             HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333

>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B

Probab=95.63  E-value=0.28  Score=32.75  Aligned_cols=127  Identities=15%  Similarity=0.231  Sum_probs=58.9

Q ss_pred             hHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhH---------HHHHHh
Q psy5576          10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL---------HGLKSE   80 (156)
Q Consensus        10 ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~   80 (156)
                      .++.+...+..+..+.......++.+-.++.....++...+..+.+....+.-++.++...+.--         .....+
T Consensus        11 ~ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E   90 (170)
T 3l4q_C           11 SVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKE   90 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHH
Confidence            35555556666666666666666666666655555555555555555544444444432221100         000012


Q ss_pred             HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHH
Q psy5576          81 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE  136 (156)
Q Consensus        81 ~~~~~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~  136 (156)
                      +..+..-...+...+..+......+...+.......-.++.++..++-++..+...
T Consensus        91 ~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~  146 (170)
T 3l4q_C           91 MQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKI  146 (170)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            22333333344444444444444444444444444444555555555444444433

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=95.43  E-value=0.26  Score=31.18  Aligned_cols=114  Identities=21%  Similarity=0.248  Sum_probs=64.0

Q ss_pred             hHHhHHHHHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHH---
Q psy5576          10 ELDGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS---   86 (156)
Q Consensus        10 ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   86 (156)
                      .|.+|...+..+...+.+.+..+.-.-.-+.+-...+..++..-.....++..++.+...+...+......+.....   
T Consensus        12 ~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQn   91 (167)
T 4gkw_A           12 EVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQN   91 (167)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHh
Confidence            35666677777777777777776666666666666777776666666666777766666665555544443332222   


Q ss_pred             -------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhH
Q psy5576          87 -------ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL  123 (156)
Q Consensus        87 -------e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i  123 (156)
                             .+.++.+.++....-+..+..-+..|..++..-.-.+
T Consensus        92 QQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~  135 (167)
T 4gkw_A           92 QQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKA  135 (167)
T ss_dssp             HHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   2333444444444444444444444444444333333

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=95.18  E-value=0.28  Score=30.07  Aligned_cols=21  Identities=19%  Similarity=0.180  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHH
Q psy5576         101 ELHGLKSELHGLKSELHGLKS  121 (156)
Q Consensus       101 ~~~~l~~~l~~l~~~~~~~~~  121 (156)
                      ....+..+...|..++..+..
T Consensus        84 dREkl~~eKe~L~~ql~~Lq~  104 (110)
T 2v4h_A           84 AREKLVEKKEYLQEQLEQLQR  104 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHhHHHHHHHHHHHHHH
Confidence            333333333333333333333

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.14  E-value=0.39  Score=31.48  Aligned_cols=32  Identities=22%  Similarity=0.214  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHH
Q psy5576         103 HGLKSELHGLKSELHGLKSELHGLKSELHGLK  134 (156)
Q Consensus       103 ~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~  134 (156)
                      ..++.+...|..++.+.+.-+..+...+..+.
T Consensus       111 ~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK  142 (154)
T 2ocy_A          111 YAIEILNKRLTEQLREKDTLLDTLTLQLKNLK  142 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=94.70  E-value=0.4  Score=29.40  Aligned_cols=17  Identities=24%  Similarity=0.438  Sum_probs=6.4

Q ss_pred             HHhHHHHHHHHHHhHHh
Q psy5576          11 LDGLKSELHGLKSELHG   27 (156)
Q Consensus        11 i~~l~~~l~~~~~~~~~   27 (156)
                      ++.|...+...+..+..
T Consensus        26 i~~L~~~L~~AEeaL~~   42 (110)
T 2v4h_A           26 LEDLRQQLQQAEEALVA   42 (110)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=94.52  E-value=0.63  Score=36.36  Aligned_cols=16  Identities=19%  Similarity=0.314  Sum_probs=7.0

Q ss_pred             HHhhHHhHHHHHHHHH
Q psy5576           7 RKSELDGLKSELHGLK   22 (156)
Q Consensus         7 ~~~ei~~l~~~l~~~~   22 (156)
                      +++.|++|+.+++++.
T Consensus        62 ltkrINELKnqLEdls   77 (562)
T 3ghg_A           62 FTNRINKLKNSLFEYQ   77 (562)
T ss_dssp             HHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344444444444443

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=93.97  E-value=0.54  Score=28.01  Aligned_cols=39  Identities=15%  Similarity=0.204  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHh
Q psy5576          87 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHG  125 (156)
Q Consensus        87 e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~  125 (156)
                      .+.-+..++..=......+..+...|..++..+...+..
T Consensus        48 Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~   86 (94)
T 3jsv_C           48 QADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK   86 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            333333333333333334444444444444444444333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.93  E-value=1.7  Score=33.59  Aligned_cols=45  Identities=13%  Similarity=0.006  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHh
Q psy5576          87 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELH  131 (156)
Q Consensus        87 e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~  131 (156)
                      ++.......+.++.++..+.++...++..+.+++..+.+....+.
T Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (487)
T 3oja_A          429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQ  473 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence            333333333333444444434333444444444444433333333

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=93.70  E-value=0.82  Score=29.22  Aligned_cols=41  Identities=17%  Similarity=0.229  Sum_probs=17.5

Q ss_pred             hhhhHhhHHhHHHhHHhhHHhHHHHHHhHHhhHHHHHHHHH
Q psy5576          53 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKS   93 (156)
Q Consensus        53 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~   93 (156)
                      +.....++..+...+..-.............+..+++++..
T Consensus        41 l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTa   81 (135)
T 2e7s_A           41 LSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA   81 (135)
T ss_dssp             TTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444433

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=93.63  E-value=0.73  Score=28.45  Aligned_cols=20  Identities=35%  Similarity=0.519  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHhHHhHHhhHH
Q psy5576          28 LKSELHGLKSELHGLKSELH   47 (156)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~l~   47 (156)
                      +......+..+++.+..++.
T Consensus         8 L~~~~~~L~~E~e~~k~K~~   27 (111)
T 2v66_B            8 LQADNQRLKYEVEALKEKLE   27 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444333

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=93.27  E-value=0.77  Score=27.58  Aligned_cols=15  Identities=40%  Similarity=0.578  Sum_probs=5.7

Q ss_pred             HHhHHHHHHHHHHhH
Q psy5576          11 LDGLKSELHGLKSEL   25 (156)
Q Consensus        11 i~~l~~~l~~~~~~~   25 (156)
                      ++.++.++..+...+
T Consensus         7 ~e~lre~l~~le~~~   21 (97)
T 2eqb_B            7 YNQLKEDYNTLKREL   21 (97)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}

Probab=92.21  E-value=1.1  Score=26.70  Aligned_cols=20  Identities=15%  Similarity=0.149  Sum_probs=7.9

Q ss_pred             hhHHHHHHhhhHhhhhhhhh
Q psy5576         131 HGLKSELHGLKSELGLNCYL  150 (156)
Q Consensus       131 ~~~~~~~~~l~~~~~~~~~~  150 (156)
                      ..+-+..-.+.+++..++++
T Consensus        86 aaLlsk~yh~ene~ar~kkl  105 (114)
T 2xzr_A           86 EEILSKIYHIENEIARIKKL  105 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHH
Confidence            33333333344444444443

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=92.17  E-value=1.1  Score=26.71  Aligned_cols=37  Identities=24%  Similarity=0.299  Sum_probs=21.9

Q ss_pred             hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHH
Q psy5576           4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELH   40 (156)
Q Consensus         4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~   40 (156)
                      |..-+.+|..|...++..-.++..++..=..+..++.
T Consensus         4 R~~EKe~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~   40 (93)
T 3s4r_A            4 RTNEKVELQELNDRFANLIDKVRFLEQQNKILLAELE   40 (93)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566677777777776666666666555544443

>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B

Probab=90.64  E-value=2.6  Score=28.04  Aligned_cols=120  Identities=14%  Similarity=0.222  Sum_probs=56.7

Q ss_pred             HHHHHHHhHHhHHHHHHHHHHhHHhHHhhHHhHHHhhhhhHhhHHhHHHhHHhhHHhHHHHHHh---------HHhhHHH
Q psy5576          17 ELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE---------LHGLKSE   87 (156)
Q Consensus        17 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~e   87 (156)
                      .++.+-..+..+...+.....+++.+-+.+..+...+.-....+......+.-++.+......-         ..+-.-+
T Consensus        11 ~ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E   90 (170)
T 3l4q_C           11 SVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKE   90 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHH
Confidence            3455555555555555555555555555555555555555555555555555555444222210         0111113


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHh
Q psy5576          88 LHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSE  143 (156)
Q Consensus        88 ~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~  143 (156)
                      +..+.....       .+...+..+......+...+.........+.++++++.-.
T Consensus        91 ~~~l~~N~e-------~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPe  139 (170)
T 3l4q_C           91 MQRILLNSE-------RLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPD  139 (170)
T ss_dssp             TTTTTHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            344444443       4444444444444444444444444444444444444433

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=90.63  E-value=1.9  Score=26.55  Aligned_cols=20  Identities=20%  Similarity=0.132  Sum_probs=7.2

Q ss_pred             HhHHHHHHHHHHHHHHHHHH
Q psy5576          96 HGLKSELHGLKSELHGLKSE  115 (156)
Q Consensus        96 ~~~~~~~~~l~~~l~~l~~~  115 (156)
                      .++...+...-.+..-|+.+
T Consensus        80 eD~E~k~n~aiErnalLE~E   99 (111)
T 2v66_B           80 EDFEQRLNQAIERNAFLESE   99 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=90.56  E-value=2.5  Score=27.67  Aligned_cols=17  Identities=12%  Similarity=0.094  Sum_probs=6.2

Q ss_pred             HHHHHHHhHHHhHHhHH
Q psy5576         111 GLKSELHGLKSELHGLK  127 (156)
Q Consensus       111 ~l~~~~~~~~~~i~~l~  127 (156)
                      .++.+...+...+.+..
T Consensus       112 ~~e~r~~~L~~ql~e~~  128 (154)
T 2ocy_A          112 AIEILNKRLTEQLREKD  128 (154)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=90.14  E-value=2.4  Score=26.82  Aligned_cols=27  Identities=26%  Similarity=0.370  Sum_probs=11.0

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5576          84 LKSELHGLKSELHGLKSELHGLKSELH  110 (156)
Q Consensus        84 ~~~e~~~l~~~~~~~~~~~~~l~~~l~  110 (156)
                      ++..+.+-..-...+...+.-+..+++
T Consensus       103 LEADLKEKDsMVe~LT~TiG~LrKELE  129 (167)
T 4gkw_A          103 LEADLKEKDSMVESLTETIGILRKELE  129 (167)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            333333333334444444444444333

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=90.09  E-value=2.2  Score=26.35  Aligned_cols=18  Identities=6%  Similarity=0.193  Sum_probs=6.4

Q ss_pred             HHhHHHhhhhhHhhHHhH
Q psy5576          46 LHGLKSELHGLKSELHGL   63 (156)
Q Consensus        46 l~~~~~~~~~l~~~~~~~   63 (156)
                      +.....+.......+..+
T Consensus        41 l~~~eaQAaTCNqTV~tL   58 (121)
T 3mq7_A           41 FQDVEAQAATANHTVMAL   58 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=89.35  E-value=3.1  Score=27.04  Aligned_cols=9  Identities=22%  Similarity=0.032  Sum_probs=3.2

Q ss_pred             HHHHHHHHH
Q psy5576         107 SELHGLKSE  115 (156)
Q Consensus       107 ~~l~~l~~~  115 (156)
                      .++..|..+
T Consensus       103 DEl~aLqlq  111 (152)
T 3a7p_A          103 AALISGTIE  111 (152)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=88.68  E-value=0.55  Score=37.45  Aligned_cols=7  Identities=29%  Similarity=0.510  Sum_probs=0.4

Q ss_pred             HhHHHhH
Q psy5576         124 HGLKSEL  130 (156)
Q Consensus       124 ~~l~~~~  130 (156)
                      ..+..++
T Consensus       436 ~~~~~~~  442 (575)
T 2i1j_A          436 RRLQEEV  442 (575)
T ss_dssp             ------C
T ss_pred             HHHHHHH
Confidence            3333333

>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}

Probab=87.67  E-value=3  Score=24.81  Aligned_cols=37  Identities=11%  Similarity=0.319  Sum_probs=16.8

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHH
Q psy5576          91 LKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLK  127 (156)
Q Consensus        91 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~  127 (156)
                      ....+.+.-+++..++.+.+.|-..+..+++++..++
T Consensus        67 qQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~k  103 (114)
T 2xzr_A           67 QQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIK  103 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3333333334444444444445445555555554444

>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A

Probab=86.03  E-value=6.4  Score=26.91  Aligned_cols=60  Identities=10%  Similarity=0.290  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhHHhHHHhHhhHHHHHHhhhHhh
Q psy5576          85 KSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSELHGLKSEL  144 (156)
Q Consensus        85 ~~e~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~  144 (156)
                      ..++.+.+..+......+..++-++...+..+..++..+..+..++......+..++..|
T Consensus        90 ~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~Dy  149 (242)
T 3c9i_A           90 RIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADY  149 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHB
T ss_pred             hcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhh
Confidence            333333344444444444444444455555555555555555555555555555555544

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=85.89  E-value=5.9  Score=26.69  Aligned_cols=8  Identities=13%  Similarity=0.538  Sum_probs=2.8

Q ss_pred             HHHHHHHH
Q psy5576         108 ELHGLKSE  115 (156)
Q Consensus       108 ~l~~l~~~  115 (156)
                      ++..++++
T Consensus        49 ql~sl~~~   56 (190)
T 4emc_A           49 QIDSLNAQ   56 (190)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            33333333

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=85.66  E-value=10  Score=28.99  Aligned_cols=21  Identities=10%  Similarity=0.202  Sum_probs=8.6

Q ss_pred             HhhHHhHHHhHHhhHHhHHHH
Q psy5576          57 KSELHGLKSELHGLKSELHGL   77 (156)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~   77 (156)
                      +.++.+.+..+.+++.+....
T Consensus       403 ~~~~~~~~~~~~~~~~~~~~~  423 (471)
T 3mq9_A          403 QQELTEAQKGFQDVEAQAATA  423 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhc
Confidence            334444444444444443333

>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A

Probab=85.45  E-value=2.7  Score=22.14  Aligned_cols=13  Identities=8%  Similarity=0.064  Sum_probs=4.7

Q ss_pred             hHHHHHHHHHHhH
Q psy5576          13 GLKSELHGLKSEL   25 (156)
Q Consensus        13 ~l~~~l~~~~~~~   25 (156)
                      .|..+++.+..++
T Consensus         8 ~Lss~V~~L~~kV   20 (52)
T 1jcd_A            8 QASSDAQTANAKA   20 (52)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2

Probab=84.70  E-value=10  Score=28.13  Aligned_cols=37  Identities=22%  Similarity=0.286  Sum_probs=24.3

Q ss_pred             hHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHHHHhHH
Q psy5576           4 KEKRKSELDGLKSELHGLKSELHGLKSELHGLKSELH   40 (156)
Q Consensus         4 ~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~~~~~~   40 (156)
                      +..++.-|..|...+...+.....+...+..++..+.
T Consensus       118 ~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~  154 (346)
T 2nrj_A          118 GETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIG  154 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666777777777777766666666666666554

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=84.44  E-value=4.6  Score=23.96  Aligned_cols=12  Identities=17%  Similarity=0.354  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHhH
Q psy5576          28 LKSELHGLKSEL   39 (156)
Q Consensus        28 ~~~~~~~~~~~~   39 (156)
                      +...+...-..+
T Consensus        14 LNdRlAsyIdKV   25 (93)
T 3s4r_A           14 LNDRFANLIDKV   25 (93)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=84.28  E-value=5.4  Score=24.62  Aligned_cols=12  Identities=33%  Similarity=0.567  Sum_probs=4.4

Q ss_pred             hHHHHHHHHHHH
Q psy5576          84 LKSELHGLKSEL   95 (156)
Q Consensus        84 ~~~e~~~l~~~~   95 (156)
                      ++.+|..++..+
T Consensus        76 LqgEI~~Lnq~L   87 (121)
T 3mq7_A           76 LEGEITTLNHKL   87 (121)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=83.99  E-value=6.6  Score=25.34  Aligned_cols=35  Identities=29%  Similarity=0.314  Sum_probs=17.5

Q ss_pred             CchhHHHHhhHHhHHHHHHHHHHhHHhHHHHHHHH
Q psy5576           1 MRRKEKRKSELDGLKSELHGLKSELHGLKSELHGL   35 (156)
Q Consensus         1 ~~~~~~~~~ei~~l~~~l~~~~~~~~~~~~~~~~~   35 (156)
                      |+|=+++..++..+...+..+...+..+...+..+
T Consensus         1 ~~~m~~~~~~l~ql~~~~qql~~~~~~l~~~~~~L   35 (151)
T 2zdi_C            1 MIRMAQNNKELEKLAYEYQVLQAQAQILAQNLELL   35 (151)
T ss_dssp             ---CCSSTTHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555555555

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=83.01  E-value=5.1  Score=23.29  Aligned_cols=30  Identities=13%  Similarity=0.325  Sum_probs=12.0

Q ss_pred             HHhhhhhHhhHHhHHHhHHhhHHhHHHHHH
Q psy5576          50 KSELHGLKSELHGLKSELHGLKSELHGLKS   79 (156)
Q Consensus        50 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   79 (156)
                      ..++..+..++..++..++....++..+..
T Consensus        26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~   55 (83)
T 2xdj_A           26 QQQLSDNQSDIDSLRGQIQENQYQLNQVVE   55 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            333333444444444444444444433333

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=82.26  E-value=5.5  Score=23.15  Aligned_cols=28  Identities=14%  Similarity=0.328  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHhHHhHH
Q psy5576         100 SELHGLKSELHGLKSELHGLKSELHGLK  127 (156)
Q Consensus       100 ~~~~~l~~~l~~l~~~~~~~~~~i~~l~  127 (156)
                      ..+..+..++..|...+.....++..+.
T Consensus        27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~   54 (83)
T 2xdj_A           27 QQLSDNQSDIDSLRGQIQENQYQLNQVV   54 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3333333333333333333333333333

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=82.15  E-value=6.8  Score=24.14  Aligned_cols=19  Identities=21%  Similarity=0.144  Sum_probs=6.8

Q ss_pred             HHHhHHhhHHHHHHHHHHH
Q psy5576          77 LKSELHGLKSELHGLKSEL   95 (156)
Q Consensus        77 ~~~~~~~~~~e~~~l~~~~   95 (156)
                      +......-+..+..+...+
T Consensus        50 L~~~~q~sE~~L~~Lqq~f   68 (112)
T 1x79_B           50 LVLRAQASEILLEELQQGL   68 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A

Probab=81.15  E-value=15  Score=27.55  Aligned_cols=15  Identities=20%  Similarity=0.233  Sum_probs=5.4

Q ss_pred             HHHHHhHHhHHhhHH
Q psy5576          33 HGLKSELHGLKSELH   47 (156)
Q Consensus        33 ~~~~~~~~~~~~~l~   47 (156)
                      ..+..++....+++.
T Consensus       143 ~~~~~~~~~~~~e~~  157 (373)
T 3hhm_B          143 DRLYEEYTRTSQEIQ  157 (373)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccchHHHH
Confidence            333333333333333

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=80.47  E-value=8.3  Score=24.06  Aligned_cols=18  Identities=33%  Similarity=0.678  Sum_probs=7.7

Q ss_pred             HHhHHHHHHHHHHhHHhH
Q psy5576          11 LDGLKSELHGLKSELHGL   28 (156)
Q Consensus        11 i~~l~~~l~~~~~~~~~~   28 (156)
                      |+.|..++..+...+..+
T Consensus        17 Ie~Lkreie~lk~ele~l   34 (120)
T 3i00_A           17 IERLYREISGLKAQLENM   34 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444444444444444333

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A

Probab=80.08  E-value=17  Score=27.34  Aligned_cols=13  Identities=23%  Similarity=0.153  Sum_probs=4.7

Q ss_pred             HhHHhHHhhHHhH
Q psy5576          37 SELHGLKSELHGL   49 (156)
Q Consensus        37 ~~~~~~~~~l~~~   49 (156)
                      .+.+.+-..+..+
T Consensus       140 ~~~~~~~~~~~~~  152 (373)
T 3hhm_B          140 REYDRLYEEYTRT  152 (373)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhccc
Confidence            3333333333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00