Psyllid ID: psy5596

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
Protein Sequence
ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYPRDSRHTGAK
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEcccccccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccHHHHccccHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEccEEEEEHHHHcccccccccccccHHHHHHccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHcccHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
ithpipdltgyitegqiyvdrqlhnrqiyppinvlpsLSRLMKSAigedmtrkdhsdvsNQLYACYAIGKDVQAMKAVVgeealtpddlLYLEFLTKFEKNFVsqgnyenrtvyeSLDIGWQLLRIFPkemlkripastlaefyprdsrhtgak
Flexible Loop (DISEMBL)
ithpipdltgyitEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEdmtrkdhsdvSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMlkripastlaefyprdsrhtgak
Low Complexity Region (SEG)
ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYPRDSRHTGAK
Disordered region (IsUnstruct)
******DLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLM***************VSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEF***********
Disordered Region (DISOPRED)
*THPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMK**IG*DMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLA*************
Disordered Region (DISEMBL)
ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYP*********
Disordered Region (DISPRO)
ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYPR********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYPRDSRHTGAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	154	2.2.26 [Sep-21-2011]
P31410	494	V-type proton ATPase subu	N/A	N/A	0.974	0.303	0.966	2e-84
P31409	490	V-type proton ATPase subu	yes	N/A	0.974	0.306	0.966	2e-84
P31401	494	V-type proton ATPase subu	N/A	N/A	0.974	0.303	0.96	4e-84
P62815	511	V-type proton ATPase subu	yes	N/A	0.961	0.289	0.932	2e-79
P62814	511	V-type proton ATPase subu	yes	N/A	0.961	0.289	0.932	2e-79
P49712	453	V-type proton ATPase subu	no	N/A	0.961	0.326	0.932	2e-79
P31408	511	V-type proton ATPase subu	yes	N/A	0.961	0.289	0.925	4e-79
Q5R5V5	511	V-type proton ATPase subu	yes	N/A	0.961	0.289	0.918	7e-79
P21281	511	V-type proton ATPase subu	yes	N/A	0.961	0.289	0.918	8e-79
Q19626	491	Probable V-type proton AT	yes	N/A	0.948	0.297	0.897	1e-75

>sp|P31410|VATB_HELVI V-type proton ATPase subunit B OS=Heliothis virescens GN=VHA55 PE=2 SV=1

 Score =  310 bits (795), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 145/150 (96%), Positives = 148/150 (98%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQIYVDRQLHNRQIYPP+NVLPSLSRLMKSAIGE MTRKDHSDVSN
Sbjct: 345 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSN 404

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNF+SQGNYENRTV+ESLDIG
Sbjct: 405 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFISQGNYENRTVFESLDIG 464

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRDSRH 150
           WQLLRIFPKEMLKRIPAS LAEFYPRDSRH
Sbjct: 465 WQLLRIFPKEMLKRIPASILAEFYPRDSRH 494

Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Heliothis virescens (taxid: 7102)

>sp|P31409|VATB_DROME V-type proton ATPase subunit B OS=Drosophila melanogaster GN=Vha55 PE=2 SV=1

 Score =  310 bits (794), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 145/150 (96%), Positives = 148/150 (98%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQIYVDRQLHNRQIYPP+NVLPSLSRLMKSAIGE MTRKDHSDVSN
Sbjct: 341 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSN 400

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNF+SQGNYENRTV+ESLDIG
Sbjct: 401 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFISQGNYENRTVFESLDIG 460

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRDSRH 150
           WQLLRIFPKEMLKRIPAS LAEFYPRDSRH
Sbjct: 461 WQLLRIFPKEMLKRIPASILAEFYPRDSRH 490

Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Drosophila melanogaster (taxid: 7227)

>sp|P31401|VATB_MANSE V-type proton ATPase subunit B OS=Manduca sexta GN=VHA55 PE=2 SV=1

 Score =  309 bits (792), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 144/150 (96%), Positives = 148/150 (98%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQIYVDRQLHNRQIYPP+NVLPSLSRLMKSAIGE MTRKDHSDVSN
Sbjct: 345 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSN 404

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNF++QGNYENRTV+ESLDIG
Sbjct: 405 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFITQGNYENRTVFESLDIG 464

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRDSRH 150
           WQLLRIFPKEMLKRIPAS LAEFYPRDSRH
Sbjct: 465 WQLLRIFPKEMLKRIPASILAEFYPRDSRH 494

Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. The B subunit is non-catalytic but combines with other subunits to form the catalytic complex. V-ATPase is responsible for energizing electrophoretic K(+)/2H(+) antiport by generating a transmembrane voltage of more than 200mV.

Manduca sexta (taxid: 7130)

>sp|P62815|VATB2_RAT V-type proton ATPase subunit B, brain isoform OS=Rattus norvegicus GN=Atp6v1b2 PE=1 SV=1

 Score =  294 bits (752), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 138/148 (93%), Positives = 143/148 (96%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE MTRKDH+DVSN
Sbjct: 361 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSN 420

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYACYAIGKDVQAMKAVVGEEALT DDLLYLEFL KFEKNF++QG YENRTVYE+LDIG
Sbjct: 421 QLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFEKNFITQGPYENRTVYETLDIG 480

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRDS 148
           WQLLRIFPKEMLKRIP STL+EFYPRDS
Sbjct: 481 WQLLRIFPKEMLKRIPQSTLSEFYPRDS 508

Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Rattus norvegicus (taxid: 10116)

>sp|P62814|VATB2_MOUSE V-type proton ATPase subunit B, brain isoform OS=Mus musculus GN=Atp6v1b2 PE=1 SV=1

 Score =  294 bits (752), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 138/148 (93%), Positives = 143/148 (96%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE MTRKDH+DVSN
Sbjct: 361 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSN 420

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYACYAIGKDVQAMKAVVGEEALT DDLLYLEFL KFEKNF++QG YENRTVYE+LDIG
Sbjct: 421 QLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFEKNFITQGPYENRTVYETLDIG 480

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRDS 148
           WQLLRIFPKEMLKRIP STL+EFYPRDS
Sbjct: 481 WQLLRIFPKEMLKRIPQSTLSEFYPRDS 508

Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mus musculus (taxid: 10090)

>sp|P49712|VATB_CHICK V-type proton ATPase subunit B OS=Gallus gallus GN=ATP6V1B PE=3 SV=1

 Score =  293 bits (751), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 138/148 (93%), Positives = 143/148 (96%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE MTRKDH+DVSN
Sbjct: 302 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSN 361

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYACYAIGKDVQAMKAVVGEEALT DDLLYLEFL KFEKNF++QG YENRTVYE+LDIG
Sbjct: 362 QLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFEKNFIAQGPYENRTVYETLDIG 421

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRDS 148
           WQLLRIFPKEMLKRIP +TLAEFYPRDS
Sbjct: 422 WQLLRIFPKEMLKRIPQTTLAEFYPRDS 449

Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Gallus gallus (taxid: 9031)

>sp|P31408|VATB2_BOVIN V-type proton ATPase subunit B, brain isoform OS=Bos taurus GN=ATP6V1B2 PE=1 SV=3

 Score =  293 bits (749), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 137/148 (92%), Positives = 143/148 (96%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE MTRKDH+DVSN
Sbjct: 361 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSN 420

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYACYAIGKDVQAMKAVVGEEALT DDLLYLEFL KFE+NF++QG YENRTVYE+LDIG
Sbjct: 421 QLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVYETLDIG 480

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRDS 148
           WQLLRIFPKEMLKRIP STL+EFYPRDS
Sbjct: 481 WQLLRIFPKEMLKRIPQSTLSEFYPRDS 508

Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Bos taurus (taxid: 9913)

>sp|Q5R5V5|VATB2_PONAB V-type proton ATPase subunit B, brain isoform OS=Pongo abelii GN=ATP6V1B2 PE=2 SV=1

 Score =  291 bits (746), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 136/148 (91%), Positives = 143/148 (96%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE MTRKDH+DVSN
Sbjct: 361 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSN 420

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYACYAIGKDVQAMKAVVGEEALT DDLLYLEFL KFE+NF++QG YENRTV+E+LDIG
Sbjct: 421 QLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVFETLDIG 480

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRDS 148
           WQLLRIFPKEMLKRIP STL+EFYPRDS
Sbjct: 481 WQLLRIFPKEMLKRIPQSTLSEFYPRDS 508

Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Pongo abelii (taxid: 9601)

>sp|P21281|VATB2_HUMAN V-type proton ATPase subunit B, brain isoform OS=Homo sapiens GN=ATP6V1B2 PE=1 SV=3

 Score =  291 bits (746), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 136/148 (91%), Positives = 143/148 (96%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE MTRKDH+DVSN
Sbjct: 361 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSN 420

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYACYAIGKDVQAMKAVVGEEALT DDLLYLEFL KFE+NF++QG YENRTV+E+LDIG
Sbjct: 421 QLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVFETLDIG 480

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRDS 148
           WQLLRIFPKEMLKRIP STL+EFYPRDS
Sbjct: 481 WQLLRIFPKEMLKRIPQSTLSEFYPRDS 508

Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Homo sapiens (taxid: 9606)

>sp|Q19626|VATB_CAEEL Probable V-type proton ATPase subunit B OS=Caenorhabditis elegans GN=vha-12 PE=1 SV=1

 Score =  281 bits (719), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 131/146 (89%), Positives = 141/146 (96%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQIYVDRQLHNR IYPPINVLPSLSRLMKSAIGE MTR+DHSDVSN
Sbjct: 341 ITHPIPDLTGYITEGQIYVDRQLHNRLIYPPINVLPSLSRLMKSAIGEGMTREDHSDVSN 400

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYACYAIGKDVQAMKAVVGEEAL+ DDLLYLEFLTKFEKNF++QG+YENR+V+ESLDIG
Sbjct: 401 QLYACYAIGKDVQAMKAVVGEEALSSDDLLYLEFLTKFEKNFITQGHYENRSVFESLDIG 460

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPR 146
           WQLLRIFP+EMLKRIP STL ++YPR
Sbjct: 461 WQLLRIFPREMLKRIPESTLEKYYPR 486

Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells (By similarity). Required for necrotic cell death and epidermal cell fusion.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
332374006	492	unknown [Dendroctonus ponderosae]	0.974	0.304	0.98	5e-84
389608757	494	vacuolar H[+]-ATPase 55kD B subunit [Pap	0.974	0.303	0.966	4e-83
190407685	494	vacuolar ATPase B subunit [Bombyx mori]	0.974	0.303	0.966	5e-83
302138846	494	vacuolar V-type H(+)-ATPase B subunit [H	0.974	0.303	0.966	8e-83
401326	494	RecName: Full=V-type proton ATPase subun	0.974	0.303	0.966	9e-83
347968745	498	AGAP002884-PA [Anopheles gambiae str. PE	0.974	0.301	0.966	9e-83
312373433	498	hypothetical protein AND_17443 [Anophele	0.974	0.301	0.966	9e-83
157111261	496	ATP synthase subunit beta vacuolar [Aede	0.974	0.302	0.966	9e-83
124487673	390	putative vacuolar ATP synthase subunit B	1.0	0.394	0.961	9e-83
195329486	490	GM25995 [Drosophila sechellia] gi|195571	0.974	0.306	0.966	1e-82

>gi|332374006|gb|AEE62144.1| unknown [Dendroctonus ponderosae]

 Score =  315 bits (806), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 147/150 (98%), Positives = 150/150 (100%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN
Sbjct: 343 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 402

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNF+SQGNYENRTV+ESLDIG
Sbjct: 403 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFISQGNYENRTVFESLDIG 462

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRDSRH 150
           WQLLRIFPKEMLKRIPA+TLAEFYPRDSRH
Sbjct: 463 WQLLRIFPKEMLKRIPAATLAEFYPRDSRH 492

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608757|dbj|BAM17990.1| vacuolar H[+]-ATPase 55kD B subunit [Papilio xuthus]

 Score =  311 bits (798), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 145/150 (96%), Positives = 149/150 (99%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQIYVDRQLHNRQIYPP+NVLPSLSRLMKSAIGE MTRKDHSDVSN
Sbjct: 345 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSN 404

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNF++QGNYENRTV+ESLDIG
Sbjct: 405 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFITQGNYENRTVFESLDIG 464

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRDSRH 150
           WQLLRIFPKEMLKRIPASTLAEFYPRDSRH
Sbjct: 465 WQLLRIFPKEMLKRIPASTLAEFYPRDSRH 494

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

>gi|190407685|gb|ACE78271.1| vacuolar ATPase B subunit [Bombyx mori]

 Score =  311 bits (798), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 145/150 (96%), Positives = 149/150 (99%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQIYVDRQLHNRQIYPP+NVLPSLSRLMKSAIGE MTRKDHSDVSN
Sbjct: 345 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSN 404

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNF++QGNYENRTV+ESLDIG
Sbjct: 405 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFITQGNYENRTVFESLDIG 464

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRDSRH 150
           WQLLRIFPKEMLKRIPASTLAEFYPRDSRH
Sbjct: 465 WQLLRIFPKEMLKRIPASTLAEFYPRDSRH 494

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|302138846|gb|ADK94761.1| vacuolar V-type H(+)-ATPase B subunit [Helicoverpa armigera]

 Score =  311 bits (796), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 145/150 (96%), Positives = 148/150 (98%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQIYVDRQLHNRQIYPP+NVLPSLSRLMKSAIGE MTRKDHSDVSN
Sbjct: 345 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSN 404

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNF+SQGNYENRTV+ESLDIG
Sbjct: 405 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFISQGNYENRTVFESLDIG 464

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRDSRH 150
           WQLLRIFPKEMLKRIPAS LAEFYPRDSRH
Sbjct: 465 WQLLRIFPKEMLKRIPASILAEFYPRDSRH 494

Source: Helicoverpa armigera

Species: Helicoverpa armigera

Genus: Helicoverpa

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|401326|sp|P31410.1|VATB_HELVI RecName: Full=V-type proton ATPase subunit B; Short=V-ATPase subunit B; AltName: Full=Vacuolar proton pump subunit B gi|237459|gb|AAB20098.1| vacuolar (V-type) H(+)-ATPase B subunit [Heliothis virescens]

 Score =  310 bits (795), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 145/150 (96%), Positives = 148/150 (98%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQIYVDRQLHNRQIYPP+NVLPSLSRLMKSAIGE MTRKDHSDVSN
Sbjct: 345 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSN 404

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNF+SQGNYENRTV+ESLDIG
Sbjct: 405 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFISQGNYENRTVFESLDIG 464

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRDSRH 150
           WQLLRIFPKEMLKRIPAS LAEFYPRDSRH
Sbjct: 465 WQLLRIFPKEMLKRIPASILAEFYPRDSRH 494

Source: Heliothis virescens

Species: Heliothis virescens

Genus: Heliothis

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347968745|ref|XP_312029.3| AGAP002884-PA [Anopheles gambiae str. PEST] gi|333467862|gb|EAA08175.4| AGAP002884-PA [Anopheles gambiae str. PEST]

 Score =  310 bits (795), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 145/150 (96%), Positives = 148/150 (98%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQIYVDRQLHNRQIYPP+NVLPSLSRLMKSAIGE MTRKDHSDVSN
Sbjct: 349 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSN 408

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNF+SQGNYENRTV+ESLDIG
Sbjct: 409 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFISQGNYENRTVFESLDIG 468

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRDSRH 150
           WQLLRIFPKEMLKRIPAS LAEFYPRDSRH
Sbjct: 469 WQLLRIFPKEMLKRIPASILAEFYPRDSRH 498

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373433|gb|EFR21178.1| hypothetical protein AND_17443 [Anopheles darlingi]

 Score =  310 bits (795), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 145/150 (96%), Positives = 148/150 (98%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQIYVDRQLHNRQIYPP+NVLPSLSRLMKSAIGE MTRKDHSDVSN
Sbjct: 349 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSN 408

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNF+SQGNYENRTV+ESLDIG
Sbjct: 409 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFISQGNYENRTVFESLDIG 468

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRDSRH 150
           WQLLRIFPKEMLKRIPAS LAEFYPRDSRH
Sbjct: 469 WQLLRIFPKEMLKRIPASILAEFYPRDSRH 498

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157111261|ref|XP_001651458.1| ATP synthase subunit beta vacuolar [Aedes aegypti] gi|4680480|gb|AAD27666.1|AF092934_1 vacuolar ATPase B subunit [Aedes aegypti] gi|108878452|gb|EAT42677.1| AAEL005798-PA [Aedes aegypti]

 Score =  310 bits (795), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 145/150 (96%), Positives = 148/150 (98%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQIYVDRQLHNRQIYPP+NVLPSLSRLMKSAIGE MTRKDHSDVSN
Sbjct: 347 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSN 406

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNF+SQGNYENRTV+ESLDIG
Sbjct: 407 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFISQGNYENRTVFESLDIG 466

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRDSRH 150
           WQLLRIFPKEMLKRIPAS LAEFYPRDSRH
Sbjct: 467 WQLLRIFPKEMLKRIPASILAEFYPRDSRH 496

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|124487673|gb|ABN11925.1| putative vacuolar ATP synthase subunit B [Maconellicoccus hirsutus]

 Score =  310 bits (795), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 149/155 (96%), Positives = 151/155 (97%), Gaps = 1/155 (0%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE MTRKDHSDVSN
Sbjct: 236 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSN 295

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNF+SQGNYENRTV+ESLDIG
Sbjct: 296 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFISQGNYENRTVFESLDIG 355

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRD-SRHTGAK 154
           WQLLRIFPKEMLKRIPASTLAEFYPRD SRH  AK
Sbjct: 356 WQLLRIFPKEMLKRIPASTLAEFYPRDSSRHAQAK 390

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195329486|ref|XP_002031442.1| GM25995 [Drosophila sechellia] gi|195571381|ref|XP_002103682.1| GD20555 [Drosophila simulans] gi|194120385|gb|EDW42428.1| GM25995 [Drosophila sechellia] gi|194199609|gb|EDX13185.1| GD20555 [Drosophila simulans]

 Score =  310 bits (795), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 145/150 (96%), Positives = 148/150 (98%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQIYVDRQLHNRQIYPP+NVLPSLSRLMKSAIGE MTRKDHSDVSN
Sbjct: 341 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSN 400

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNF+SQGNYENRTV+ESLDIG
Sbjct: 401 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFISQGNYENRTVFESLDIG 460

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRDSRH 150
           WQLLRIFPKEMLKRIPAS LAEFYPRDSRH
Sbjct: 461 WQLLRIFPKEMLKRIPASILAEFYPRDSRH 490

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
FB|FBgn0005671	490	Vha55 "Vacuolar H[+]-ATPase 55	0.974	0.306	0.966	6.3e-76
ZFIN|ZDB-GENE-030711-4	509	atp6v1b2 "ATPase, H+ transport	0.974	0.294	0.926	5.3e-72
MGI|MGI:109618	511	Atp6v1b2 "ATPase, H+ transport	0.974	0.293	0.920	1.1e-71
RGD|620284	511	Atp6v1b2 "ATPase, H transporti	0.974	0.293	0.920	1.1e-71
UNIPROTKB|F1NID6	453	ATP6V1B2 "Uncharacterized prot	0.961	0.326	0.932	1.4e-71
UNIPROTKB|F1NU21	512	ATP6V1B2 "Uncharacterized prot	0.961	0.289	0.932	1.4e-71
UNIPROTKB|P49712	453	ATP6V1B "V-type proton ATPase	0.961	0.326	0.932	1.4e-71
UNIPROTKB|Q9I8A2	496	VATB "Vacuolar H-ATPase B subu	0.961	0.298	0.932	1.4e-71
UNIPROTKB|P31408	511	ATP6V1B2 "V-type proton ATPase	0.974	0.293	0.913	2.3e-71
UNIPROTKB|E2RAC6	511	ATP6V1B2 "Uncharacterized prot	0.974	0.293	0.913	2.3e-71

FB|FBgn0005671 Vha55 "Vacuolar H[+]-ATPase 55kD subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
 Identities = 145/150 (96%), Positives = 148/150 (98%)

Query:     1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
             ITHPIPDLTGYITEGQIYVDRQLHNRQIYPP+NVLPSLSRLMKSAIGE MTRKDHSDVSN
Sbjct:   341 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSN 400

Query:    61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
             QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNF+SQGNYENRTV+ESLDIG
Sbjct:   401 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFISQGNYENRTVFESLDIG 460

Query:   121 WQLLRIFPKEMLKRIPASTLAEFYPRDSRH 150
             WQLLRIFPKEMLKRIPAS LAEFYPRDSRH
Sbjct:   461 WQLLRIFPKEMLKRIPASILAEFYPRDSRH 490

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0033181 "plasma membrane proton-transporting V-type ATPase complex" evidence=IMP

GO:0005769 "early endosome" evidence=IDA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IGI;IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005903 "brush border" evidence=IDA

GO:0007035 "vacuolar acidification" evidence=IDA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-030711-4 atp6v1b2 "ATPase, H+ transporting, lysosomal V1 subunit B2" [Danio rerio (taxid:7955)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 139/150 (92%), Positives = 144/150 (96%)

Query:     1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
             IT PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE MTRKDHSDVSN
Sbjct:   360 ITRPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSN 419

Query:    61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
             QLYACYAIGKDVQAMKAVVGEEALT DDLLYLEFL KFE+NF+SQG YENRTV+E+LDIG
Sbjct:   420 QLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFERNFISQGAYENRTVFETLDIG 479

Query:   121 WQLLRIFPKEMLKRIPASTLAEFYPRDSRH 150
             WQLLRIFPKEMLKRIP STLAEFYPRDS+H
Sbjct:   480 WQLLRIFPKEMLKRIPQSTLAEFYPRDSKH 509

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

MGI|MGI:109618 Atp6v1b2 "ATPase, H+ transporting, lysosomal V1 subunit B2" [Mus musculus (taxid:10090)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 139/151 (92%), Positives = 145/151 (96%)

Query:     1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
             ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE MTRKDH+DVSN
Sbjct:   361 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSN 420

Query:    61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
             QLYACYAIGKDVQAMKAVVGEEALT DDLLYLEFL KFEKNF++QG YENRTVYE+LDIG
Sbjct:   421 QLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFEKNFITQGPYENRTVYETLDIG 480

Query:   121 WQLLRIFPKEMLKRIPASTLAEFYPRDS-RH 150
             WQLLRIFPKEMLKRIP STL+EFYPRDS +H
Sbjct:   481 WQLLRIFPKEMLKRIPQSTLSEFYPRDSAKH 511

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005902 "microvillus" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

RGD|620284 Atp6v1b2 "ATPase, H transporting, lysosomal V1 subunit B2" [Rattus norvegicus (taxid:10116)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 139/151 (92%), Positives = 145/151 (96%)

Query:     1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
             ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE MTRKDH+DVSN
Sbjct:   361 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSN 420

Query:    61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
             QLYACYAIGKDVQAMKAVVGEEALT DDLLYLEFL KFEKNF++QG YENRTVYE+LDIG
Sbjct:   421 QLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFEKNFITQGPYENRTVYETLDIG 480

Query:   121 WQLLRIFPKEMLKRIPASTLAEFYPRDS-RH 150
             WQLLRIFPKEMLKRIP STL+EFYPRDS +H
Sbjct:   481 WQLLRIFPKEMLKRIPQSTLSEFYPRDSAKH 511

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0005902 "microvillus" evidence=IEA;ISO

GO:0007035 "vacuolar acidification" evidence=TAS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IDA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0030641 "regulation of cellular pH" evidence=TAS

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0046034 "ATP metabolic process" evidence=IEA

UNIPROTKB|F1NID6 ATP6V1B2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 138/148 (93%), Positives = 143/148 (96%)

Query:     1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
             ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE MTRKDH+DVSN
Sbjct:   302 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSN 361

Query:    61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
             QLYACYAIGKDVQAMKAVVGEEALT DDLLYLEFL KFEKNF++QG YENRTVYE+LDIG
Sbjct:   362 QLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFEKNFIAQGPYENRTVYETLDIG 421

Query:   121 WQLLRIFPKEMLKRIPASTLAEFYPRDS 148
             WQLLRIFPKEMLKRIP +TLAEFYPRDS
Sbjct:   422 WQLLRIFPKEMLKRIPQTTLAEFYPRDS 449

GO:0005524 "ATP binding" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

UNIPROTKB|F1NU21 ATP6V1B2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 138/148 (93%), Positives = 143/148 (96%)

Query:     1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
             ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE MTRKDH+DVSN
Sbjct:   361 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSN 420

Query:    61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
             QLYACYAIGKDVQAMKAVVGEEALT DDLLYLEFL KFEKNF++QG YENRTVYE+LDIG
Sbjct:   421 QLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFEKNFIAQGPYENRTVYETLDIG 480

Query:   121 WQLLRIFPKEMLKRIPASTLAEFYPRDS 148
             WQLLRIFPKEMLKRIP +TLAEFYPRDS
Sbjct:   481 WQLLRIFPKEMLKRIPQTTLAEFYPRDS 508

GO:0005524 "ATP binding" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

UNIPROTKB|P49712 ATP6V1B "V-type proton ATPase subunit B" [Gallus gallus (taxid:9031)]

 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 138/148 (93%), Positives = 143/148 (96%)

Query:     1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
             ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE MTRKDH+DVSN
Sbjct:   302 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSN 361

Query:    61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
             QLYACYAIGKDVQAMKAVVGEEALT DDLLYLEFL KFEKNF++QG YENRTVYE+LDIG
Sbjct:   362 QLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFEKNFIAQGPYENRTVYETLDIG 421

Query:   121 WQLLRIFPKEMLKRIPASTLAEFYPRDS 148
             WQLLRIFPKEMLKRIP +TLAEFYPRDS
Sbjct:   422 WQLLRIFPKEMLKRIPQTTLAEFYPRDS 449

GO:0005524 "ATP binding" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

UNIPROTKB|Q9I8A2 VATB "Vacuolar H-ATPase B subunit osteoclast isozyme" [Gallus gallus (taxid:9031)]

 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 138/148 (93%), Positives = 143/148 (96%)

Query:     1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
             ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE MTRKDH+DVSN
Sbjct:   345 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSN 404

Query:    61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
             QLYACYAIGKDVQAMKAVVGEEALT DDLLYLEFL KFEKNF++QG YENRTVYE+LDIG
Sbjct:   405 QLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFEKNFIAQGPYENRTVYETLDIG 464

Query:   121 WQLLRIFPKEMLKRIPASTLAEFYPRDS 148
             WQLLRIFPKEMLKRIP +TLAEFYPRDS
Sbjct:   465 WQLLRIFPKEMLKRIPQTTLAEFYPRDS 492

GO:0005524 "ATP binding" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

UNIPROTKB|P31408 ATP6V1B2 "V-type proton ATPase subunit B, brain isoform" [Bos taurus (taxid:9913)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 138/151 (91%), Positives = 145/151 (96%)

Query:     1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
             ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE MTRKDH+DVSN
Sbjct:   361 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSN 420

Query:    61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
             QLYACYAIGKDVQAMKAVVGEEALT DDLLYLEFL KFE+NF++QG YENRTVYE+LDIG
Sbjct:   421 QLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVYETLDIG 480

Query:   121 WQLLRIFPKEMLKRIPASTLAEFYPRDS-RH 150
             WQLLRIFPKEMLKRIP STL+EFYPRDS +H
Sbjct:   481 WQLLRIFPKEMLKRIPQSTLSEFYPRDSAKH 511

GO:0005829 "cytosol" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2RAC6 ATP6V1B2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 138/151 (91%), Positives = 145/151 (96%)

Query:     1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
             ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE MTRKDH+DVSN
Sbjct:   361 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSN 420

Query:    61 QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
             QLYACYAIGKDVQAMKAVVGEEALT DDLLYLEFL KFE+NF++QG YENRTVYE+LDIG
Sbjct:   421 QLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVYETLDIG 480

Query:   121 WQLLRIFPKEMLKRIPASTLAEFYPRDS-RH 150
             WQLLRIFPKEMLKRIP STL+EFYPRDS +H
Sbjct:   481 WQLLRIFPKEMLKRIPQSTLSEFYPRDSAKH 511

GO:0005902 "microvillus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B5YFA1	VATB_DICT6	No assigned EC number	0.5821	0.9480	0.3173	yes	N/A
Q8SR34	VATB_ENCCU	No assigned EC number	0.75	0.9350	0.3018	yes	N/A
P31408	VATB2_BOVIN	No assigned EC number	0.9256	0.9610	0.2896	yes	N/A
P31409	VATB_DROME	No assigned EC number	0.9666	0.9740	0.3061	yes	N/A
Q8TIJ0	VATB_METAC	No assigned EC number	0.5655	0.9415	0.3152	yes	N/A
P62815	VATB2_RAT	No assigned EC number	0.9324	0.9610	0.2896	yes	N/A
P62814	VATB2_MOUSE	No assigned EC number	0.9324	0.9610	0.2896	yes	N/A
P31401	VATB_MANSE	No assigned EC number	0.96	0.9740	0.3036	N/A	N/A
Q9SZN1	VATB2_ARATH	No assigned EC number	0.7972	0.9610	0.3039	yes	N/A
Q76NU1	VATB_DICDI	No assigned EC number	0.7284	0.9805	0.3062	yes	N/A
Q2NF88	VATB_METST	No assigned EC number	0.5547	0.9480	0.3126	yes	N/A
Q5R5V5	VATB2_PONAB	No assigned EC number	0.9189	0.9610	0.2896	yes	N/A
P22663	VATB_METBA	No assigned EC number	0.5655	0.9415	0.3152	yes	N/A
Q9YF36	VATB_AERPE	No assigned EC number	0.5684	0.9480	0.3153	yes	N/A
P49712	VATB_CHICK	No assigned EC number	0.9324	0.9610	0.3267	no	N/A
Q8TUT0	VATB_METKA	No assigned EC number	0.5890	0.9480	0.1474	yes	N/A
Q25691	VATB_PLAFA	No assigned EC number	0.7191	0.9480	0.2955	yes	N/A
O57729	VATB_PYRHO	No assigned EC number	0.5684	0.9480	0.3139	yes	N/A
P21281	VATB2_HUMAN	No assigned EC number	0.9189	0.9610	0.2896	yes	N/A
O29100	VATB_ARCFU	No assigned EC number	0.5410	0.9480	0.3106	yes	N/A
Q9UXU8	VATB_PYRAB	No assigned EC number	0.5684	0.9480	0.3160	yes	N/A
Q19626	VATB_CAEEL	No assigned EC number	0.8972	0.9480	0.2973	yes	N/A
P16140	VATB_YEAST	No assigned EC number	0.7916	0.9350	0.2785	yes	N/A
B5Y8B6	VATB_COPPD	No assigned EC number	0.5655	0.9415	0.3165	yes	N/A
Q2FP51	VATB1_METHJ	No assigned EC number	0.5684	0.9480	0.3173	yes	N/A
P31411	VATB_SCHPO	No assigned EC number	0.7417	0.9805	0.3001	yes	N/A
P31410	VATB_HELVI	No assigned EC number	0.9666	0.9740	0.3036	N/A	N/A
Q8U4A5	VATB_PYRFU	No assigned EC number	0.5684	0.9480	0.3160	yes	N/A
Q8W4E2	VATB3_ARATH	No assigned EC number	0.8108	0.9610	0.3039	yes	N/A
Q60187	VATB_METMA	No assigned EC number	0.5655	0.9415	0.3152	yes	N/A
P11574	VATB1_ARATH	No assigned EC number	0.8108	0.9610	0.3045	yes	N/A
A3CS72	VATB_METMJ	No assigned EC number	0.5753	0.9480	0.3167	yes	N/A
B8E137	VATB_DICTD	No assigned EC number	0.5753	0.9480	0.3173	yes	N/A
O27035	VATB_METTH	No assigned EC number	0.5517	0.9415	0.3131	yes	N/A
A5UKB1	VATB_METS3	No assigned EC number	0.5510	0.9545	0.3181	yes	N/A
Q3ITC7	VATB_NATPD	No assigned EC number	0.5675	0.9610	0.3142	yes	N/A
Q46FH4	VATB_METBF	No assigned EC number	0.5724	0.9415	0.3152	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	154
TIGR01040	466	TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B	1e-115
PRK04196	460	PRK04196, PRK04196, V-type ATP synthase subunit B;	8e-84
COG1156	463	COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase su	6e-81
TIGR01041	458	TIGR01041, ATP_syn_B_arch, ATP synthase archaeal,	5e-71
cd01135	276	cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-	2e-27
PRK02118	436	PRK02118, PRK02118, V-type ATP synthase subunit B;	2e-20
pfam00306	110	pfam00306, ATP-synt_ab_C, ATP synthase alpha/beta	4e-19
pfam00006	213	pfam00006, ATP-synt_ab, ATP synthase alpha/beta fa	5e-14
TIGR01026	440	TIGR01026, fliI_yscN, ATPase FliI/YscN family	2e-10
COG1157	441	COG1157, FliI, Flagellar biosynthesis/type III sec	1e-09
PRK07721	438	PRK07721, fliI, flagellum-specific ATP synthase; V	1e-08
TIGR03497	413	TIGR03497, FliI_clade2, flagellar protein export A	5e-08
cd01136	326	cd01136, ATPase_flagellum-secretory_path_III, Flag	4e-07
TIGR03498	418	TIGR03498, FliI_clade3, flagellar protein export A	7e-07
TIGR03496	411	TIGR03496, FliI_clade1, flagellar protein export A	1e-06
PRK08472	434	PRK08472, fliI, flagellum-specific ATP synthase; V	2e-06
PRK06793	432	PRK06793, fliI, flagellum-specific ATP synthase; V	7e-06
TIGR02546	422	TIGR02546, III_secr_ATP, type III secretion appara	5e-05
PRK07196	434	PRK07196, fliI, flagellum-specific ATP synthase; V	1e-04
PRK08927	442	PRK08927, fliI, flagellum-specific ATP synthase; V	2e-04
PRK07960	455	PRK07960, fliI, flagellum-specific ATP synthase; V	3e-04
PRK05688	451	PRK05688, fliI, flagellum-specific ATP synthase; V	4e-04
PRK06002	450	PRK06002, fliI, flagellum-specific ATP synthase; V	5e-04
PRK06936	439	PRK06936, PRK06936, type III secretion system ATPa	6e-04
PRK07594	433	PRK07594, PRK07594, type III secretion system ATPa	0.001
PRK13343	502	PRK13343, PRK13343, F0F1 ATP synthase subunit alph	0.001
TIGR01039	461	TIGR01039, atpD, ATP synthase, F1 beta subunit	0.002
PRK08149	428	PRK08149, PRK08149, ATP synthase SpaL; Validated	0.003
PRK08972	444	PRK08972, fliI, flagellum-specific ATP synthase; V	0.003

>gnl|CDD|233244 TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B subunit

 Score =  333 bits (855), Expect = e-115
 Identities = 133/148 (89%), Positives = 139/148 (93%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE MTRKDHSDVSN
Sbjct: 317 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSN 376

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYACYAIGKDVQAMKAVVGEEAL+ +DLLYLEFL KFEKNF++QG YENRT++ESLDI 
Sbjct: 377 QLYACYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFEKNFIAQGPYENRTIFESLDIA 436

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRDS 148
           WQLLRIFPKEMLKRIPA  L EFYPR S
Sbjct: 437 WQLLRIFPKEMLKRIPAKILEEFYPRKS 464

This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 466

>gnl|CDD|235251 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional

 Score =  253 bits (648), Expect = 8e-84
 Identities = 88/147 (59%), Positives = 113/147 (76%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQI + R+LH + IYPPI+VLPSLSRLMK  IGE  TR+DH DV+N
Sbjct: 310 ITHPIPDLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSRLMKDGIGEGKTREDHKDVAN 369

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYA YA GKD++ + A+VGEEAL+  D  YL+F   FE+ FV+QG  ENR++ E+LD+G
Sbjct: 370 QLYAAYARGKDLRELAAIVGEEALSERDRKYLKFADAFEREFVNQGFDENRSIEETLDLG 429

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRD 147
           W+LL I P+  LKRI    + +++P+ 
Sbjct: 430 WELLSILPESELKRIKDEYIEKYHPKY 456

Length = 460

>gnl|CDD|224078 COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]

 Score =  245 bits (628), Expect = 6e-81
 Identities = 89/146 (60%), Positives = 111/146 (76%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQI + R LH + IYPPINVLPSLSRLMK  IGE  TR+DH DVSN
Sbjct: 313 ITHPIPDLTGYITEGQIVLSRDLHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHGDVSN 372

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYA YA G+D++ + AVVGEEAL+  D  YL+F   FE+ F+ QG YENR++ E+LD+G
Sbjct: 373 QLYAAYAEGRDLRELVAVVGEEALSERDRKYLKFADLFEQRFIKQGRYENRSIEETLDLG 432

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPR 146
           W+LL I P+  L RI    + +++P+
Sbjct: 433 WELLSILPESELTRIKPDLIDKYHPK 458

Length = 463

>gnl|CDD|200071 TIGR01041, ATP_syn_B_arch, ATP synthase archaeal, B subunit

 Score =  220 bits (562), Expect = 5e-71
 Identities = 89/147 (60%), Positives = 112/147 (76%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDLTGYITEGQI + R+LH + IYPPINVLPSLSRLMK  IGE  TR+DH DVS+
Sbjct: 308 ITHPIPDLTGYITEGQIVLSRELHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHKDVSD 367

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLYA YA G+D++ + A+VGEEAL+  D  YL+F   FE+ FV QG  ENR++ E+LDIG
Sbjct: 368 QLYAAYAEGRDLRGLVAIVGEEALSERDRKYLKFADLFERKFVRQGFNENRSIEETLDIG 427

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRD 147
           W+LL I P+  LKRI    + +++P+ 
Sbjct: 428 WELLSILPESELKRIDEEYIEKYHPKY 454

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases [Energy metabolism, ATP-proton motive force interconversion]. Length = 458

>gnl|CDD|238555 cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-catalytic) subunit B

 Score =  102 bits (256), Expect = 2e-27
 Identities = 38/41 (92%), Positives = 39/41 (95%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRL 41
           ITHPIPDLTGYITEGQI +DRQLHNR IYPPINVLPSLSRL
Sbjct: 236 ITHPIPDLTGYITEGQIVLDRQLHNRGIYPPINVLPSLSRL 276

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit. Length = 276

>gnl|CDD|179373 PRK02118, PRK02118, V-type ATP synthase subunit B; Provisional

 Score = 85.5 bits (212), Expect = 2e-20
 Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 23/155 (14%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           +THP+PD TGYITEGQ Y    L   +I P      SLSRL +  IG+  TR+DH D+ N
Sbjct: 300 VTHPVPDNTGYITEGQFY----LRRGRIDP----FGSLSRLKQLVIGK-KTREDHGDLMN 350

Query: 61  ---QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESL 117
              +LYA     K+  AM        L+  D   L+F   FE   +      N  + E+L
Sbjct: 351 AMIRLYADSREAKEKMAMGF-----KLSNWDEKLLKFSELFESRLMDLE--VNIPLEEAL 403

Query: 118 DIGWQLL-RIF-PKEMLKRIPASTLAEFYPRDSRH 150
           D+GW++L + F P+E+   I    + +++P++  H
Sbjct: 404 DLGWKILAQCFHPEEVG--IKEQLIDKYWPKNCLH 436

Length = 436

>gnl|CDD|215848 pfam00306, ATP-synt_ab_C, ATP synthase alpha/beta chain, C terminal domain

 Score = 76.9 bits (190), Expect = 4e-19
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 12/99 (12%)

Query: 57  DVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENR----- 111
            V+ QL    A  +++QA+  +VGE+AL+ +D L LE   + E+ F+ Q  Y        
Sbjct: 2   QVAGQLKLELAQYRELQAIVQLVGEDALSEEDKLTLERARRIEE-FLKQNQYSPEPVEKQ 60

Query: 112 --TVYESLDIGWQLLR----IFPKEMLKRIPASTLAEFY 144
              V E++D+ + LLR      P++ L RI    LA++ 
Sbjct: 61  YVPVEETIDLFYALLRGKFDDLPEDALYRIGTIDLAKYK 99

Length = 110

>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family, nucleotide-binding domain

 Score = 65.9 bits (162), Expect = 5e-14
 Identities = 22/39 (56%), Positives = 28/39 (71%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLS 39
           IT PIPD T  IT+GQI + R+L  R IYP I++L S+S
Sbjct: 175 ITDPIPDNTISITDGQIVLSRELAERGIYPAIDILLSVS 213

This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. Length = 213

>gnl|CDD|233237 TIGR01026, fliI_yscN, ATPase FliI/YscN family

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 41/130 (31%), Positives = 56/130 (43%), Gaps = 12/130 (9%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           +  PI D    I +G I + R L  R  YP I+VL S+SRLM + + E+  R   +    
Sbjct: 321 MNEPIADSVRGILDGHIVLSRALAQRGHYPAIDVLASISRLMTAIVSEEHRRA--ARKFR 378

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLL--YLEFLTKFEKNFVSQGNYENRTVYESLD 118
           +L + Y   KD +     +G      D  L   +    K E  F+ QG  E     ESL 
Sbjct: 379 ELLSKY---KDNE-DLIRIGAYQRGSDRELDFAIAKYPKLE-RFLKQGINEKVNFEESLQ 433

Query: 119 IGWQLLRIFP 128
              QL  IF 
Sbjct: 434 ---QLEEIFR 440

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins [Energy metabolism, ATP-proton motive force interconversion]. Length = 440

>gnl|CDD|224079 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 4   PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLY 63
           PI D    I +G I + R L     YP I+VL S+SR+M   + E     +H   + +L 
Sbjct: 324 PIADEVRSILDGHIVLSRALAEAGHYPAIDVLASISRVMPQIVSE-----EHRKAARRLR 378

Query: 64  ACYAIGKDVQ 73
              +  ++ +
Sbjct: 379 QLLSRYEENE 388

Length = 441

>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 8/71 (11%)

Query: 4   PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN--- 60
           PI D    I +G   +DRQL N+  YP INVL S+SR+M       +   +H + +N   
Sbjct: 319 PIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRVMN-----HIVSPEHKEAANRFR 373

Query: 61  QLYACYAIGKD 71
           +L + Y   +D
Sbjct: 374 ELLSTYQNSED 384

Length = 438

>gnl|CDD|211826 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 4   PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQL 62
           PI D    I +G I + R+L  +  YP I+VL S+SR+M      ++  ++H +++ +L
Sbjct: 298 PIADAVRGILDGHIVLSRELAAKNHYPAIDVLASVSRVM-----NEIVSEEHKELAGKL 351

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively [Cellular processes, Chemotaxis and motility]. Length = 413

>gnl|CDD|238556 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific ATPase/type III secretory pathway virulence-related protein

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 18/50 (36%), Positives = 25/50 (50%)

Query: 4   PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRK 53
           PI D    I +G I + R L     YP I+VL S+SRLM + +  +    
Sbjct: 230 PIADAVRSILDGHIVLSRALAAAGHYPAIDVLKSISRLMNAVVTPEHKEA 279

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. Length = 326

>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 18/47 (38%), Positives = 24/47 (51%)

Query: 4   PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDM 50
           P+ D    I +G I +DR +  R  YP INVL S+SRL       + 
Sbjct: 303 PVADAVRGILDGHIVLDRAIAERGRYPAINVLASVSRLAPRVWSPEE 349

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. Length = 418

>gnl|CDD|213817 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI

 Score = 46.3 bits (111), Expect = 1e-06
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 4   PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLY 63
           PI D    I +G I + R+L  +  YP I++L S+SR+M   +       +H   + +  
Sbjct: 300 PIADAARAILDGHIVLSRELAEQGHYPAIDILASISRVMPDVVSP-----EHRQAARRFK 354

Query: 64  ACYA 67
              +
Sbjct: 355 QLLS 358

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively [Cellular processes, Chemotaxis and motility]. Length = 411

>gnl|CDD|181439 PRK08472, fliI, flagellum-specific ATP synthase; Validated

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 4   PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLY 63
           PI D +  I +G I + R+L +  IYPPIN+L S SR+M      D+   +H   + +  
Sbjct: 318 PIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMN-----DIISPEHKLAARKFK 372

Query: 64  ACYAIGKD 71
             Y++ K+
Sbjct: 373 RLYSLLKE 380

Length = 434

>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated

 Score = 44.2 bits (104), Expect = 7e-06
 Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 4   PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLY 63
           P+PDL   I +G I + R+L     YP I+VL S+SR+M     E++   +H  ++N++ 
Sbjct: 316 PVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIM-----EEIVSPNHWQLANEMR 370

Query: 64  ACYAIGKD 71
              +I K+
Sbjct: 371 KILSIYKE 378

Length = 432

>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus H+-transporting two-sector ATPase

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 4   PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLY 63
           PI D    I +G I + R L  R  YP I+VL SLSR+M       +   +H   + +L 
Sbjct: 306 PIADEVRSILDGHIVLSRALAERNHYPAIDVLASLSRVMSQ-----VVSTEHRRAAGKLR 360

Query: 64  ACYAIGKDVQ 73
              A  K+V+
Sbjct: 361 RLLATYKEVE 370

[Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 422

>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 4   PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLY 63
           PI D    + +G I + R+L     YP I++  S+SR M   IG        +  ++ L 
Sbjct: 317 PIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIG-----SQQAKAASLLK 371

Query: 64  ACYA 67
            CYA
Sbjct: 372 QCYA 375

Length = 434

>gnl|CDD|236351 PRK08927, fliI, flagellum-specific ATP synthase; Validated

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 4   PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLM 42
           P+ D    I +G I ++R +  R  YP INVL S+SR M
Sbjct: 321 PVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTM 359

Length = 442

>gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 12/127 (9%)

Query: 4   PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLY 63
           PI D    I +G I + R+L     YP I++  S+SR M + I E    +       QL 
Sbjct: 338 PIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIDEQHYARVRQ--FKQLL 395

Query: 64  ACYAIGKDVQAMKAVVGEEALTPDDLL--YLEFLTKFEKNFVSQGNYENRTVYESLDIGW 121
           + +   +D+ +    VG  A   D +L   +    + E  F+ QG +E R  +E  D   
Sbjct: 396 SSFQRNRDLVS----VGAYAKGSDPMLDKAIALWPQLEA-FLQQGIFE-RADWE--DSLQ 447

Query: 122 QLLRIFP 128
            L RIFP
Sbjct: 448 ALERIFP 454

Length = 455

>gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 4   PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLY 63
           PI D    + +G I + R+L     YP I++  S+SR+M   +  +  R+  +    QL+
Sbjct: 331 PIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVDPEHLRR--AQRFKQLW 388

Query: 64  ACYAIGKDVQAMKAVV 79
           + Y   +D+ ++ A V
Sbjct: 389 SRYQQSRDLISVGAYV 404

Length = 451

>gnl|CDD|235666 PRK06002, fliI, flagellum-specific ATP synthase; Validated

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 4   PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
           P+ D      +G I +DR +  +  YP ++ L S+SRL + A
Sbjct: 327 PVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLARHA 368

Length = 450

>gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGED 49
           +T P+ D T  I +G I + R+L     YP I+VL S SR+M   + ++
Sbjct: 320 MTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKE 368

Length = 439

>gnl|CDD|136438 PRK07594, PRK07594, type III secretion system ATPase SsaN; Validated

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGED 49
           +  P+ D    + +G I + R+L  R  YP I+VL +LSR+       +
Sbjct: 313 MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHE 361

Length = 433

>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 12  ITEGQIYVDRQLHNRQIYPPINVLPSLSR 40
           IT+GQIY+D  L      P ++V  S+SR
Sbjct: 337 ITDGQIYLDSDLFAAGQRPAVDVGLSVSR 365

Length = 502

>gnl|CDD|211621 TIGR01039, atpD, ATP synthase, F1 beta subunit

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMK-SAIGEDMTRKDHSDVS 59
           +T P P  T    +    + R++    IYP ++ L S SRL+  S +GE     +H DV+
Sbjct: 305 LTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDPSVVGE-----EHYDVA 359

Query: 60  NQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
             +       K++Q + A++G + L+ +D L +E   + ++ F+SQ
Sbjct: 360 RGVQQILQRYKELQDIIAILGMDELSEEDKLTVERARRIQR-FLSQ 404

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit [Energy metabolism, ATP-proton motive force interconversion]. Length = 461

>gnl|CDD|236166 PRK08149, PRK08149, ATP synthase SpaL; Validated

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 4   PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRL 41
           PI D    I +G IY+ R+L  +  YP I+VL S+SR+
Sbjct: 312 PIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRV 349

Length = 428

>gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 8/77 (10%)

Query: 4   PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGED---MTRKDHSDVSN 60
           PI D +  I +G I + R+L +   YP I++  S+SR+M   I E+     R+       
Sbjct: 325 PIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVMPMVISEEHLEAMRR-----VK 379

Query: 61  QLYACYAIGKDVQAMKA 77
           Q+Y+ Y   +D+ ++ A
Sbjct: 380 QVYSLYQQNRDLISIGA 396

Length = 444

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	154
TIGR01040	466	V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. Th	100.0
PRK04196	460	V-type ATP synthase subunit B; Provisional	100.0
TIGR01041	458	ATP_syn_B_arch ATP synthase archaeal, B subunit. A	100.0
COG1157	441	FliI Flagellar biosynthesis/type III secretory pat	100.0
COG1156	463	NtpB Archaeal/vacuolar-type H+-ATPase subunit B [E	100.0
PRK04192	586	V-type ATP synthase subunit A; Provisional	100.0
TIGR01043	578	ATP_syn_A_arch ATP synthase archaeal, A subunit. A	100.0
KOG1351|consensus	489		99.97
TIGR01042	591	V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. Th	99.97
PRK02118	436	V-type ATP synthase subunit B; Provisional	99.97
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	99.97
TIGR03305	449	alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit	99.96
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	99.96
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	99.96
TIGR01039	461	atpD ATP synthase, F1 beta subunit. The sequences	99.96
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	99.96
PRK07594	433	type III secretion system ATPase SsaN; Validated	99.96
PRK12597	461	F0F1 ATP synthase subunit beta; Provisional	99.96
PRK08927	442	fliI flagellum-specific ATP synthase; Validated	99.96
PRK09281	502	F0F1 ATP synthase subunit alpha; Validated	99.96
PRK09280	463	F0F1 ATP synthase subunit beta; Validated	99.96
PRK06936	439	type III secretion system ATPase; Provisional	99.96
PRK06820	440	type III secretion system ATPase; Validated	99.96
PRK09099	441	type III secretion system ATPase; Provisional	99.96
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	99.96
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	99.96
PRK08149	428	ATP synthase SpaL; Validated	99.96
CHL00060	494	atpB ATP synthase CF1 beta subunit	99.96
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	99.96
TIGR03324	497	alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit a	99.96
PRK06315	442	type III secretion system ATPase; Provisional	99.96
PRK13343	502	F0F1 ATP synthase subunit alpha; Provisional	99.96
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	99.96
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	99.96
PRK14698	1017	V-type ATP synthase subunit A; Provisional	99.95
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	99.95
TIGR00962	501	atpA proton translocating ATP synthase, F1 alpha s	99.95
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	99.95
CHL00059	485	atpA ATP synthase CF1 alpha subunit	99.95
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	99.94
PRK07165	507	F0F1 ATP synthase subunit alpha; Validated	99.94
PRK05922	434	type III secretion system ATPase; Validated	99.94
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.94
COG0055	468	AtpD F0F1-type ATP synthase, beta subunit [Energy	99.92
COG1155	588	NtpA Archaeal/vacuolar-type H+-ATPase subunit A [E	99.92
PTZ00185	574	ATPase alpha subunit; Provisional	99.91
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	99.91
KOG1352|consensus	618		99.9
KOG1350|consensus	521		99.88
COG0056	504	AtpA F0F1-type ATP synthase, alpha subunit [Energy	99.77
PRK12608	380	transcription termination factor Rho; Provisional	99.69
TIGR00767	415	rho transcription termination factor Rho. Members	99.6
PRK09376	416	rho transcription termination factor Rho; Provisio	99.6
PRK12678	672	transcription termination factor Rho; Provisional	99.46
cd01128	249	rho_factor Transcription termination factor rho is	99.39
KOG1353|consensus	340		99.33
PF00306	113	ATP-synt_ab_C: ATP synthase alpha/beta chain, C te	99.2
COG1158	422	Rho Transcription termination factor [Transcriptio	97.2

>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit

Probab=100.00  E-value=6.2e-42  Score=296.00  Aligned_cols=149  Identities=89%  Similarity=1.380  Sum_probs=144.9

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      +||||||++++||||||||||+||++||||||||+.|+||+|+.++++++++++|.++++++++.|+++++|+++|+|+|
T Consensus       317 ~~~pI~d~~~sIlDGhIvLsr~La~~g~yPAIDvl~SvSRl~~~v~~~~~~~~~h~~~a~~l~~~y~~~~~L~~ig~y~G  396 (466)
T TIGR01040       317 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG  396 (466)
T ss_pred             CCCcchhhhhhhcceEEEECHHHHhCCCCCccCCccchhhccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhhCCCCCc
Q psy5596          81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYPRDSR  149 (154)
Q Consensus        81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~~~~~~~  149 (154)
                      .|+++|+++.++.+++.|++.||+|+.++..++++++.+.|.||+.+|.+++++||+++|++|||+.|-
T Consensus       397 ~d~l~d~a~~~l~~~~~i~~~FL~Q~~~~~~~~~~~l~~~w~ll~~~~~~~~~r~~~~~~~~~~~~~~~  465 (466)
T TIGR01040       397 EEALSSEDLLYLEFLDKFEKNFIAQGPYENRTIFESLDIAWQLLRIFPKEMLKRIPAKILEEFYPRKSA  465 (466)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHHHHhCCHHHhccCCHHHHHHhcccccC
Confidence            999999999999999999899999999999999999999999999999999999999999999998763

This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.

>PRK04196 V-type ATP synthase subunit B; Provisional

Probab=100.00  E-value=5.3e-39  Score=279.18  Aligned_cols=148  Identities=59%  Similarity=0.998  Sum_probs=143.3

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      +||||+|++++||||||||||+||++||||||||+.|+||+|+.+++++++.++|.++++++++.|+++++|+++++|+|
T Consensus       310 ~~dpI~d~~~sI~DG~ivLsr~La~~g~~PAIDvl~SvSR~~~~~~~~~~~~~~~~~~a~~l~~~y~~~~~l~~~~~~~G  389 (460)
T PRK04196        310 ITHPIPDLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSRLMKDGIGEGKTREDHKDVANQLYAAYARGKDLRELAAIVG  389 (460)
T ss_pred             CCCchhhhhhhhcceEEEEcHHHHhCCCCCccCCccchhhhccccCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            68999999999999999999999999999999999999999999889888888999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhhCCCCC
Q psy5596          81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYPRDS  148 (154)
Q Consensus        81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~~~~~~  148 (154)
                      .++++|+++..+++++++++.||+|+.++++++++++..+|++++.++.+++.+++.+++++|||+..
T Consensus       390 ~~~l~d~~~~~~~~~~~~~~~fL~Q~~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~l~~~~~~~~~  457 (460)
T PRK04196        390 EEALSERDRKYLKFADAFEREFVNQGFDENRSIEETLDLGWELLSILPESELKRIKDEYIEKYHPKYR  457 (460)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhccccc
Confidence            99999999999999999988999999999999999999999999999999999999999999999864

>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit

Probab=100.00  E-value=8.8e-39  Score=277.45  Aligned_cols=147  Identities=61%  Similarity=1.010  Sum_probs=141.6

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      +||||||++++||||||||||+||++||||||||+.|+||+|+.++++|++.++|.++++++++.|+++++|+++++|+|
T Consensus       308 ~~dPI~d~~~sIlDGhivLsr~La~~G~yPAIDvl~SvSR~~~~~ig~~~~~~~~~~~a~~l~~~y~~~~~L~~i~~~~G  387 (458)
T TIGR01041       308 ITHPIPDLTGYITEGQIVLSRELHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHKDVSDQLYAAYAEGRDLRGLVAIVG  387 (458)
T ss_pred             CCCchHHhhhhhcceEEEEcHHHHhCCCCCccCCccchhhcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            68999999999999999999999999999999999999999998778878888999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhhCCCC
Q psy5596          81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYPRD  147 (154)
Q Consensus        81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~~~~~  147 (154)
                      .|+++|+++..+++++.|++.||+|+.++++++++++..+|+++..++.+++.+++..++++|||+.
T Consensus       388 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  454 (458)
T TIGR01041       388 EEALSERDRKYLKFADLFERRFVRQGRNENRSIEETLDIGWELLSILPESELKRIDEEYIEKYHPKY  454 (458)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999976999999999999999999999999999999999999999999999954

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.

>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=100.00  E-value=5.4e-34  Score=242.69  Aligned_cols=115  Identities=28%  Similarity=0.429  Sum_probs=106.9

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHH---HHHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVS---NQLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a---~~~~~~y~~~~eL~~ig~   77 (154)
                      ++|||+|++|+||||||||||+||++||||||||+.|+||+|++++++     +|.+.|   +++++.|+++++|+++|+
T Consensus       321 ~~dPiaD~~RsILDGHIvLsR~LA~~ghyPaIdvl~SiSRvm~~i~~~-----~h~~~a~~~r~lls~y~e~edLi~iGa  395 (441)
T COG1157         321 MNDPIADEVRSILDGHIVLSRALAEAGHYPAIDVLASISRVMPQIVSE-----EHRKAARRLRQLLSRYEENEDLIRIGA  395 (441)
T ss_pred             CCCchhhhhhhhccceEEeeHhHHhcCCCCCcchHHHHHHHhhhcCCH-----HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            589999999999999999999999999999999999999999999885     888887   589999999999999999


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL  124 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll  124 (154)
                      |+ |.|+..|.++..++.   | ++||+|+.++..+++++++.+..++
T Consensus       396 Y~~G~D~~~D~Ai~~~p~---i-~~fL~Q~~~e~~~~~~t~~~L~~~~  439 (441)
T COG1157         396 YQKGSDPELDKAIKLYPK---I-EQFLKQGIDEKSSFEETLEQLEAIL  439 (441)
T ss_pred             ccCCCCHHHHHHHHhhHH---H-HHHHcCCccccCCHHHHHHHHHHHh
Confidence            99 999999999887766   5 9999999999999999999877765

>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]

Probab=100.00  E-value=1.1e-32  Score=233.52  Aligned_cols=149  Identities=60%  Similarity=1.015  Sum_probs=145.7

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      +||||||.|.+|+.|||||||+|..+|+||+||++.|+||+|+..+++..|+++|..+++++++.|++.+++.++.+.+|
T Consensus       313 ITHPIPDlTGYITEGQivl~r~l~~~gIyPpi~vlpSLSRL~~~giG~g~TReDH~~~snql~a~YA~g~d~r~l~avvg  392 (463)
T COG1156         313 ITHPIPDLTGYITEGQIVLSRDLHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHGDVSNQLYAAYAEGRDLRELVAVVG  392 (463)
T ss_pred             cCCCCCcccceeccceEEEEhhcccCCcCCCccccccHHHHhhcccCCCccccccHHHHHHHHHHHhcchhHHHHHHHhh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhhCCCCCc
Q psy5596          81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYPRDSR  149 (154)
Q Consensus        81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~~~~~~~  149 (154)
                      .+.+++.|+..++.+..+...|++|+.+++.+++++++..|.+|+.+|..+|++|+.++|++|||+..-
T Consensus       393 e~aLs~~D~~~l~F~d~FE~~fi~qg~~enrsieetLdlgW~lL~~lp~~el~ri~~~~I~ky~p~~~~  461 (463)
T COG1156         393 EEALSERDRKYLKFADLFEQRFIKQGRYENRSIEETLDLGWELLSILPESELTRIKPDLIDKYHPKYRK  461 (463)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHhHHHHHhCCHhHhccCCHHHHHHhhhhhhc
Confidence            999999999999999999999999999999999999999999999999999999999999999998754

>PRK04192 V-type ATP synthase subunit A; Provisional

Probab=100.00  E-value=3.6e-33  Score=246.90  Aligned_cols=126  Identities=21%  Similarity=0.343  Sum_probs=119.6

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccC---cHHHHHHHHHHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMT---RKDHSDVSNQLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~---~~~~~~~a~~~~~~y~~~~eL~~ig~   77 (154)
                      ||||||++|++|+||||+|||+||++||||||||+.|+||+++.+ .+||.   +++|.+++++++++|++++++.++.+
T Consensus       397 ~sePVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~~~~-~~~~~~~v~~~~~~~~~~~~~~L~~~~el~eiv~  475 (586)
T PRK04192        397 FSEPVTQNTLRIVKVFWALDAELADRRHFPAINWLTSYSLYLDQV-APWWEENVDPDWRELRDEAMDLLQREAELQEIVR  475 (586)
T ss_pred             CCcchHHHHHHHhCceEEEcHHHHhCCcCCccCCccchhhhhhcc-cchhhcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999997 45664   37999999999999999999999999


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhC
Q psy5596          78 VVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIF  127 (154)
Q Consensus        78 ~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~  127 (154)
                      ++|.+.|+++++.++.++++|++.||+|++|+++|.+|+++++|.||+++
T Consensus       476 lvG~d~Ls~~d~~~l~~a~~i~~~fL~Q~~f~~~d~~~~l~k~~~~l~~i  525 (586)
T PRK04192        476 LVGPDALPEEDRLILEVARLIREDFLQQNAFDPVDTYCPPEKQYEMLKLI  525 (586)
T ss_pred             HhCcccCCHHHHHHHHHHHHHHHhhcCCCCCCCccccccHHHHHHHHHHH
Confidence            99999999999999999999988999999999999999999999998854

>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit

Probab=100.00  E-value=3.6e-33  Score=246.61  Aligned_cols=125  Identities=21%  Similarity=0.302  Sum_probs=116.8

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhcccc---CcHHHHHHHHHHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDM---TRKDHSDVSNQLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~---~~~~~~~~a~~~~~~y~~~~eL~~ig~   77 (154)
                      |+|||||+|++|+||||+|||+||++||||||||+.|+||+|+.+ ++||   ..++|.+++++++++|+++++|+++.+
T Consensus       394 ~sdPVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~~~~-~~~~~~~v~~~~~~~~~~~~~lL~~~~el~~iv~  472 (578)
T TIGR01043       394 FSEPVTQNTLRIVKVFWALDADLAQRRHFPAINWLQSYSLYVDLV-QDWWHENVDPDWREMRDEAMDLLQKESELQEIVQ  472 (578)
T ss_pred             CCccHHHHHHHHhCcEEEeCHHHHhcCCCCCcCcccchhhhcccc-ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            689999999999999999999999999999999999999999996 7788   567999999999999999999999999


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhh
Q psy5596          78 VVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRI  126 (154)
Q Consensus        78 ~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~  126 (154)
                      ++|.|++++.|+.++..++.+++.||+|++|+++|.+|+++++..+|..
T Consensus       473 lvG~d~L~~~d~~il~~a~~i~e~FLqQ~~~~~~d~~~~~~k~~~~L~~  521 (578)
T TIGR01043       473 LVGPDALPERQKLILEVARMIREAFLQQNAFDPVDTYCPPQKQYRILRA  521 (578)
T ss_pred             ccCCCCCCHHHHHHHHHhHHHHHhhCCCCCCCCccCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999877777777777653

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.

>KOG1351|consensus

Probab=99.97  E-value=3.4e-31  Score=218.65  Aligned_cols=150  Identities=90%  Similarity=1.376  Sum_probs=146.8

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      +|+||||-|.+|++|+|+.||+|.++.+||+||+|-|+||+|...+++++++.+|.++.++++++|+-.++.+.|-+.+|
T Consensus       339 ithpipdltgyitegqiyvdrqlhnr~iyppinvlpslsrlmksaigegmtr~dh~dvsnqlya~yaigkdvqamkavvg  418 (489)
T KOG1351|consen  339 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG  418 (489)
T ss_pred             cCCCCCcccceeecceEEEehhhhcccCCCCcccchhHHHHHHHHhcCCcccccchhhHHHHHHHHHhcchHHHHHHHhc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhhCCCCCcc
Q psy5596          81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYPRDSRH  150 (154)
Q Consensus        81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~~~~~~~~  150 (154)
                      .++++.+|+.+++...++...|+.|+.|+..+..++++..|.||++||++.|++||+..+++|+++++.+
T Consensus       419 eeals~ed~l~lefl~kfek~fi~qg~yenrtvfesldi~w~llrifpreml~rip~~~ld~~y~r~~~~  488 (489)
T KOG1351|consen  419 EEALSSEDLLYLEFLDKFEKNFISQGAYENRTVFESLDIAWQLLRIFPREMLKRIPAKTLDEFYSRDSTK  488 (489)
T ss_pred             ccccChhhhHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHhHHHHHhhccHHHHHHhccccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999998854

>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit

Probab=99.97  E-value=2.2e-31  Score=234.94  Aligned_cols=126  Identities=20%  Similarity=0.301  Sum_probs=117.3

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCc--HHHHHHHHHHHHHHHccHhHHHHHhh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTR--KDHSDVSNQLYACYAIGKDVQAMKAV   78 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~--~~~~~~a~~~~~~y~~~~eL~~ig~~   78 (154)
                      |+|||+++|++|+||||+|||+||++||||||||+.|+||||+.+ .+||+.  ++|.+++++++.+|+++++++++.++
T Consensus       400 ~sePVt~~t~~i~~~f~~Ldr~LA~~ghyPAId~l~S~Sr~~~~l-~~~~~~~~~~~~~~~~~~~~lL~~~~el~eiv~l  478 (591)
T TIGR01042       400 FSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRAL-EEFYEKFYPEFVPLRTKAKEILQEEEDLNEIVQL  478 (591)
T ss_pred             CCCchHHHHHHHhcceeeeCHHHHhCCCCCCcCCchhhhhhhhhc-ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999996 557765  79999999999999999999999999


Q ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhC
Q psy5596          79 VGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIF  127 (154)
Q Consensus        79 ~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~  127 (154)
                      +|.+.+++.|+.++..++.++++||+|++|+.+|..|+++++..+|+.+
T Consensus       479 ~g~~~l~~~d~~i~~~a~~i~e~FLqQ~a~~~~d~~~~~~kt~~~L~~i  527 (591)
T TIGR01042       479 VGKDALAETDKITLEVAKLIKEDFLQQNGYTPYDRFCPFYKTVGMMRNM  527 (591)
T ss_pred             hCCccCCHHHHHHHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999988888888888887643

This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.

>PRK02118 V-type ATP synthase subunit B; Provisional

Probab=99.97  E-value=1.3e-30  Score=224.76  Aligned_cols=136  Identities=35%  Similarity=0.566  Sum_probs=127.9

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      +||||||++++||||||||||+|        |||+.|+||+|+.++++ +++++|+++|+++++.|+++++++++.++ |
T Consensus       300 ~tdPi~d~~~silDGqIvLsR~l--------ID~l~S~SRl~~~v~g~-~t~~~h~~~a~~l~~~~a~y~e~~dli~i-G  369 (436)
T PRK02118        300 VTHPVPDNTGYITEGQFYLRRGR--------IDPFGSLSRLKQLVIGK-KTREDHGDLMNAMIRLYADSREAKEKMAM-G  369 (436)
T ss_pred             cCccHHHHHHHhcCcEEEecccc--------ccCccccccccccccCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHh-h
Confidence            68999999999999999999999        99999999999999997 88889999999999999999999999996 8


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhhCCCCCc
Q psy5596          81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYPRDSR  149 (154)
Q Consensus        81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~~~~~~~  149 (154)
                       .+|+++|+.++.++++|.+.|++|+  +.+++++|++..|.+|+.+|++++++|++++|++|||+..+
T Consensus       370 -~eLs~~d~~~l~~~~~~e~~~~~~g--~~~~~~etl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  435 (436)
T PRK02118        370 -FKLSNWDEKLLKFSELFESRLMDLE--VNIPLEEALDLGWKILAQCFHPEEVGIKEQLIDKYWPKNCL  435 (436)
T ss_pred             -hhcCHHHHHHHHHHHHHHHHhhcCC--CcccHHHHHHHHHHHHHHCCHHHHhcCCHHHHHHhhccccC
Confidence             5999999999999999977777777  88999999999999999999999999999999999997554

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=99.97  E-value=1.5e-30  Score=224.70  Aligned_cols=115  Identities=23%  Similarity=0.371  Sum_probs=103.1

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~   77 (154)
                      ++|||+|++++||||||||||+||++||||||||+.|+||+|+.++++     +|+++++   ++++.|++.++|+++|.
T Consensus       314 ~~dpi~d~~~~ilDG~ivLsr~la~~g~yPAIDvl~S~SR~~~~~~~~-----~~~~~a~~~r~~~a~y~e~~~li~~g~  388 (434)
T PRK07196        314 QQDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGS-----QQAKAASLLKQCYADYMAIKPLIPLGG  388 (434)
T ss_pred             CCCchhHhhhhhcceEEEEcHHHHhCCCCCccCCccccCccchhccCH-----HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            589999999999999999999999999999999999999999998884     8999985   67777888888888888


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL  124 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll  124 (154)
                      |+ |.|+++|.++..   .+.| +.||+|+.+++++++++++.+.+++
T Consensus       389 y~~g~d~~~d~ai~~---~~~i-~~fL~Q~~~e~~~~~~~~~~l~~~~  432 (434)
T PRK07196        389 YVAGADPMADQAVHY---YPAI-TQFLRQEVGHPALFSASVEQLTGMF  432 (434)
T ss_pred             CCCCCCHHHHHHHHh---HHHH-HHHhCCCCCCCCCHHHHHHHHHHHh
Confidence            98 999998887664   4556 9999999999999999999887765

>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta

Probab=99.96  E-value=3.8e-30  Score=222.84  Aligned_cols=128  Identities=20%  Similarity=0.326  Sum_probs=115.5

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHH-HHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLM-KSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVV   79 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~-~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~   79 (154)
                      +||||+|++++||||||||||+||++||||||||+.|+||+| +.+++     ++|+++++++++.|++++++.++.+..
T Consensus       300 ~~dPi~d~~~silDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~i~~-----~~h~~~a~~~~~~l~~y~e~~~li~~~  374 (449)
T TIGR03305       300 FTDPAAVHTFSHLSASLVLSRKRASEGLYPAIDPLQSTSKMATPGIVG-----ERHYDLAREVRQTLAQYEELKDIIAML  374 (449)
T ss_pred             CCCchhHhhhhhcceEEEEcHHHHhCCCCCccCCCcchhhcCCcccCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            689999999999999999999999999999999999999999 66655     499999999999999999999988887


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCC----------CCHHHHHHHHHHHHhhCChHhhcCCChh
Q psy5596          80 GEEALTPDDLLYLEFLTKFEKNFVSQGNYEN----------RTVYESLDIGWQLLRIFPKEMLKRIPAS  138 (154)
Q Consensus        80 G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~----------~~~~~sl~~~~~ll~~~~~~~~~~i~~~  138 (154)
                      |.+.+++.+...+.+++.| +.||+|+.++.          +++++|++-.|.++.    +.++.+|+.
T Consensus       375 g~~~l~~~~~~~i~~~~~i-~~fL~Q~~~~~e~~t~~~g~~v~l~~tl~~~~~il~----g~~~~~~~~  438 (449)
T TIGR03305       375 GLEQLSREDRRVVNRARRL-ERFLTQPFFTTEQFTGMKGKTVSLEDALDGCERILN----DEFQDYPER  438 (449)
T ss_pred             CCccCCHHHHHHHHHHHHH-HHHhCCCCcccccccCCCCceeEHHHHHHHHHHHhc----CCcccCCHH
Confidence            8789999999999999999 88999999988          889999999998864    456666664

A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=99.96  E-value=1.6e-30  Score=224.53  Aligned_cols=116  Identities=25%  Similarity=0.405  Sum_probs=106.8

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHH---HHHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVS---NQLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a---~~~~~~y~~~~eL~~ig~   77 (154)
                      +||||+|++++|+||||||||+||++||||||||+.|+||+|+.+++     ++|.+++   +++++.|++.++|+++|+
T Consensus       322 ~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~i~~-----~~h~~~a~~~r~~ls~y~~~e~li~~g~  396 (444)
T PRK08972        322 LQDPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVMPMVIS-----EEHLEAMRRVKQVYSLYQQNRDLISIGA  396 (444)
T ss_pred             CCcchHHhhhhhcceEEEEcHHHHhCCCCCeeCCccccccCchhcCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            68999999999999999999999999999999999999999999877     4999999   689999999999999999


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHh
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLR  125 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~  125 (154)
                      |. |.|+..|+++..   .+.| ++||+|+.+++.+++++++.+.++++
T Consensus       397 y~~g~d~~~d~ai~~---~~~i-~~fl~Q~~~~~~~~~~~~~~l~~~~~  441 (444)
T PRK08972        397 YKQGSDPRIDNAIRL---QPAM-NAFLQQTMKEAVPYDMSVNMLKQLAA  441 (444)
T ss_pred             ccCCCCHHHHHHHHh---hHHH-HHHhCCCCCCCCCHHHHHHHHHHHHh
Confidence            99 999988887664   4556 99999999999999999999988875

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=99.96  E-value=1.7e-30  Score=225.04  Aligned_cols=116  Identities=25%  Similarity=0.395  Sum_probs=103.3

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHH---HHHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVS---NQLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a---~~~~~~y~~~~eL~~ig~   77 (154)
                      ++|||+|++++||||||||||+||++||||||||+.|+||+|+.++++     +|.+++   +++++.|++.++|+++|+
T Consensus       328 ~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~-----~~~~~a~~~r~~la~y~~~~dli~~g~  402 (451)
T PRK05688        328 QQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVDP-----EHLRRAQRFKQLWSRYQQSRDLISVGA  402 (451)
T ss_pred             CCCchHHHHHhhccEEEEEcHHHHhCCCCCccCCccccCccchhhCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            689999999999999999999999999999999999999999998774     999999   567777778889999999


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHh
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLR  125 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~  125 (154)
                      |+ |.|+..|.+   +.+.+.| +.||+|+.+++.+++++++.+.+++.
T Consensus       403 y~~g~d~~~d~a---i~~~~~i-~~fL~Q~~~e~~~~~~~~~~l~~~~~  447 (451)
T PRK05688        403 YVAGGDPETDLA---IARFPHL-VQFLRQGLRENVSLAQSREQLAAIFA  447 (451)
T ss_pred             ccCCCCHHHHHH---HHhhHHH-HHHhCCCCCCCCCHHHHHHHHHHHhc
Confidence            99 888755554   4466677 99999999999999999998887764

>TIGR01039 atpD ATP synthase, F1 beta subunit

Probab=99.96  E-value=4.7e-30  Score=222.49  Aligned_cols=128  Identities=24%  Similarity=0.364  Sum_probs=113.6

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHH-HHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLM-KSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVV   79 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~-~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~   79 (154)
                      ++|||+|++++||||||||||+||++||||||||+.|+||+| +.+++     ++|+++++++++.|++++++.++....
T Consensus       305 ~~dPi~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~-----~~h~~~a~~~r~~la~y~e~~~li~i~  379 (461)
T TIGR01039       305 LTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDPSVVG-----EEHYDVARGVQQILQRYKELQDIIAIL  379 (461)
T ss_pred             CCCccHHHHHHhcceEEEECHHHHhCCCCCCcCCccccccccCCccCC-----HHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence            689999999999999999999999999999999999999999 77666     499999999999988888888888877


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCC----------CCCCCHHHHHHHHHHHHhhCChHhhcCCChh
Q psy5596          80 GEEALTPDDLLYLEFLTKFEKNFVSQGN----------YENRTVYESLDIGWQLLRIFPKEMLKRIPAS  138 (154)
Q Consensus        80 G~d~l~d~~~~~~~~~~~i~~~fL~Q~~----------~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~  138 (154)
                      |.++++|.+...+.+++.| ++||+|+.          .+.++++++++.+.+++.    ++++.+|+.
T Consensus       380 g~~~lsd~~~~~l~~~~~i-~~fL~Q~~~~~~~~t~~~~~~~~~~~~~~~l~~i~~----g~~~~~~~~  443 (461)
T TIGR01039       380 GMDELSEEDKLTVERARRI-QRFLSQPFFVAEVFTGQPGKYVPLKDTIRGFKEILE----GKYDHLPEQ  443 (461)
T ss_pred             CCccCCHHHHHHHHhHHHH-HHHhCCCCchhccccCCCCcccCHHHHHHHHHHHhC----CCccCCCHH
Confidence            7778899899999999999 89999999          799999999998887764    345566654

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=99.96  E-value=1.9e-30  Score=224.15  Aligned_cols=115  Identities=25%  Similarity=0.392  Sum_probs=104.2

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~   77 (154)
                      |||||+|++++||||||||||+||++||||||||+.|+||+|+.++++     +|+++++   ++++.|++.++|+++|.
T Consensus       315 ~~dpi~d~~~~i~Dg~ivLsr~la~~g~~PAIDvl~S~SR~~~~~~~~-----~~~~~a~~~r~~l~~y~e~e~li~~G~  389 (434)
T PRK08472        315 MSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMNDIISP-----EHKLAARKFKRLYSLLKENEVLIRIGA  389 (434)
T ss_pred             CCCCchHHhhhhcceEEEEcHHHHhCCCCCccCCccccCccchhcCCH-----HHHHHHHHHHHHHHhchhHHHHHHhhC
Confidence            689999999999999999999999999999999999999999999885     8898884   78888899999999999


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL  124 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll  124 (154)
                      |+ |.|+..|.+   +.+++.| ++||+|+.+++++++++++.+.+++
T Consensus       390 y~~g~d~~~d~a---i~~~~~i-~~fL~Q~~~~~~~~~~~~~~l~~~~  433 (434)
T PRK08472        390 YQKGNDKELDEA---ISKKEFM-EQFLKQNPNELFPFEQTFEQLEEIL  433 (434)
T ss_pred             ccCCCCHHHHHH---HHhHHHH-HHHhCCCCCCCCCHHHHHHHHHHHh
Confidence            98 988877765   4467778 9999999999999999999887765

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=99.96  E-value=1.8e-30  Score=224.19  Aligned_cols=115  Identities=22%  Similarity=0.304  Sum_probs=102.7

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~   77 (154)
                      ++|||+|++++||||||||||+||++||||||||+.|+||+|+.+++     ++|+++++   ++++.|++.++|+++|+
T Consensus       313 ~~dpi~d~~~~ilDG~IvLsr~la~~g~yPAIDvl~S~SR~~~~~~~-----~~h~~~a~~~r~~la~y~e~e~li~~G~  387 (433)
T PRK07594        313 MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS-----HEHRQLAAILRRCLALYQEVELLIRIGE  387 (433)
T ss_pred             CCCchHHHhhhhcceEEEEcHHHHhCCCCCccCCcccccccchhhCC-----HHHHHHHHHHHHHHHcchHHHHHHHhcC
Confidence            68999999999999999999999999999999999999999999877     49999995   56777777788889999


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL  124 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll  124 (154)
                      |+ |.|+..|.++.   +.+.| ++||+|+..++++++++++.+..++
T Consensus       388 y~~g~d~~~d~ai~---~~~~i-~~fl~Q~~~~~~~~~~~~~~l~~~~  431 (433)
T PRK07594        388 YQRGVDTDTDKAID---TYPDI-CTFLRQSKDEVCGPELLIEKLHQIL  431 (433)
T ss_pred             CCCCCCHHHHHHHH---hhHHH-HHHhCCCCCCCCCHHHHHHHHHHHh
Confidence            98 98888888765   45556 9999999999999999999887765

>PRK12597 F0F1 ATP synthase subunit beta; Provisional

Probab=99.96  E-value=5.8e-30  Score=222.52  Aligned_cols=128  Identities=20%  Similarity=0.275  Sum_probs=113.8

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHH-HHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLM-KSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVV   79 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~-~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~   79 (154)
                      ++|||+|++++||||||||||+||++||||||||+.|+||+| +.+++     ++|.++++++++.|+++++++++.+..
T Consensus       305 ~~dPI~d~~~~ilDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~i~~-----~~h~~~a~~~r~~la~y~e~e~li~i~  379 (461)
T PRK12597        305 LTDPAAVAIFSHLDSTVVLSRAQAAKGIYPAIDPLASSSNLLDPLVVG-----ERHYDAAIEVKRILQRYKELEDVIAIL  379 (461)
T ss_pred             CCCccHHHHHhhcceEEEEcHHHHhCCCCCccCCccccccccccccCC-----HHHHHHHHHHHHHHHhhhhHHHHHHHc
Confidence            589999999999999999999999999999999999999999 67777     499999998888888888888888876


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCC----------CCCCCHHHHHHHHHHHHhhCChHhhcCCChh
Q psy5596          80 GEEALTPDDLLYLEFLTKFEKNFVSQGN----------YENRTVYESLDIGWQLLRIFPKEMLKRIPAS  138 (154)
Q Consensus        80 G~d~l~d~~~~~~~~~~~i~~~fL~Q~~----------~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~  138 (154)
                      |.+++++++...+.+++.| +.||+|+.          .+.++++++++.+++++.    ++++.+|+.
T Consensus       380 gy~~l~~~~d~~i~~~~~i-~~fL~Q~~~~~~~~t~~~~~~~~~~~~~~~l~~i~~----g~~~~~~~~  443 (461)
T PRK12597        380 GIDELSAEDKIIVKRARQL-QRFLTQPFFVTEAFTGEPGVSVPLEETLDSCERILN----GEYDDWSEE  443 (461)
T ss_pred             CCccCCHHHHHHHHhHHHH-HHHhCCCcchhhcccCCCCcccCHHHHHHHHHHHhC----CCccCCCHH
Confidence            7667999999999999999 89999999          678999999998888863    466777765

>PRK08927 fliI flagellum-specific ATP synthase; Validated

Probab=99.96  E-value=2.6e-30  Score=223.47  Aligned_cols=116  Identities=27%  Similarity=0.379  Sum_probs=105.6

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHH---HHHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVS---NQLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a---~~~~~~y~~~~eL~~ig~   77 (154)
                      +||||+|++++|+||||||||+||++||||||||+.|+||+|+.++++     +|.+++   +++++.|++.++++++|.
T Consensus       318 ~~dpi~d~~~~i~Dg~ivLsr~La~~g~~PAIDvl~S~SR~~~~~~~~-----~~~~~a~~~r~~l~~y~e~edli~lg~  392 (442)
T PRK08927        318 HNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGCNDP-----EENPLVRRARQLMATYADMEELIRLGA  392 (442)
T ss_pred             CCCchhhhhhccccEEEEEcHHHHhCCCCCccCCcccccccccccCCH-----HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            689999999999999999999999999999999999999999998875     677766   589999999999999999


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHh
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLR  125 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~  125 (154)
                      |. |.|+..|.++.   +.+.| +.||+|+.+++++++++++.+|++++
T Consensus       393 y~~g~d~~~d~ai~---~~~~i-~~fL~Q~~~e~~~~~~~~~~l~~l~~  437 (442)
T PRK08927        393 YRAGSDPEVDEAIR---LNPAL-EAFLRQGKDEATSLAEGYARLAQILG  437 (442)
T ss_pred             CcCCCCHHHHHHHH---ccHHH-HHhcCCCCCCCCCHHHHHHHHHHHhc
Confidence            97 99999888855   45557 89999999999999999999998874

>PRK09281 F0F1 ATP synthase subunit alpha; Validated

Probab=99.96  E-value=6.2e-30  Score=224.35  Aligned_cols=135  Identities=29%  Similarity=0.313  Sum_probs=121.5

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      +||||||++++||||||||||+||++||||||||+.|+||+|+.++.     ++|++++++++..|++++++.++.++ |
T Consensus       326 ~s~pI~d~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~~~~~-----~~~~~~a~~lr~~la~y~e~~~l~~~-g  399 (502)
T PRK09281        326 VSAYIPTNVISITDGQIFLESDLFNAGIRPAINVGISVSRVGGAAQI-----KAMKKVAGTLRLDLAQYRELEAFAQF-G  399 (502)
T ss_pred             CCCcchHhhhcccceEEEEcHHHHhCCCCCccCCcccccccCCccCC-----HHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence            58999999999999999999999999999999999999999999876     49999999999999999999999887 5


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH----HHhhCChHhhcCCChhHHHhh
Q psy5596          81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQ----LLRIFPKEMLKRIPASTLAEF  143 (154)
Q Consensus        81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~----ll~~~~~~~~~~i~~~~i~~~  143 (154)
                       ..+++++...+.+++.| +.||+|+.++++++++++..+|.    +|..++.+++..++..+++.+
T Consensus       400 -~~l~~~~~~~l~~~~~i-~~fL~Q~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~i~~~~~~~~~~l  464 (502)
T PRK09281        400 -SDLDEATRAQLERGQRL-VELLKQPQYSPLPVEEQVVILYAGTNGYLDDVPVEKVRRFEAELLAYL  464 (502)
T ss_pred             -cCCCHHHHHHHHHHHHH-HHHhCCCCCCCCCHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHH
Confidence             66889999999999999 79999999999999999999998    555667777777777777654

>PRK09280 F0F1 ATP synthase subunit beta; Validated

Probab=99.96  E-value=7.5e-30  Score=221.58  Aligned_cols=128  Identities=23%  Similarity=0.348  Sum_probs=111.5

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHH-HHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLM-KSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVV   79 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~-~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~   79 (154)
                      ++|||+|++++||||||||||+||++||||||||+.|+||+| +.+++     ++|.++++++++.|++++++.++....
T Consensus       306 ~~dPI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~-----~~~~~~a~~~r~~la~y~e~e~li~i~  380 (463)
T PRK09280        306 LTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPLIVG-----EEHYDVAREVQQILQRYKELQDIIAIL  380 (463)
T ss_pred             CCCcchHhhhhhcceEEEEcHHHHhCCCCCccCCccccccccccccCC-----HHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence            589999999999999999999999999999999999999999 56655     599999998888888888888877766


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCC----------CCCCCHHHHHHHHHHHHhhCChHhhcCCChh
Q psy5596          80 GEEALTPDDLLYLEFLTKFEKNFVSQGN----------YENRTVYESLDIGWQLLRIFPKEMLKRIPAS  138 (154)
Q Consensus        80 G~d~l~d~~~~~~~~~~~i~~~fL~Q~~----------~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~  138 (154)
                      |.++++|.+...+.+++.| +.||+|+.          .+.++++++++.+.+++.    |+++.+|+.
T Consensus       381 gy~~~sd~~d~ai~~~~~i-~~fL~Q~~~~~~~ft~~~~~~~~~~~~~~~l~~i~~----g~~~~~~~~  444 (463)
T PRK09280        381 GMDELSEEDKLTVARARKI-QRFLSQPFFVAEQFTGSPGKYVPLKDTIRGFKEILE----GEYDHLPEQ  444 (463)
T ss_pred             CCccCCHHHHHHHHhhHHH-HHhccCCcchhhcccCCCCcccCHHHHHHHHHHHhC----CCccCCCHH
Confidence            6678888888899999999 89999999          899999999998887763    455566554

>PRK06936 type III secretion system ATPase; Provisional

Probab=99.96  E-value=3.3e-30  Score=222.68  Aligned_cols=115  Identities=26%  Similarity=0.394  Sum_probs=99.2

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~   77 (154)
                      ++|||+|++++|+||||||||+||++||||||||+.|+||+|+.++++     +|.++++   ++++.|++.++++++|.
T Consensus       320 ~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~-----~~~~~a~~~r~~la~y~e~e~li~iG~  394 (439)
T PRK06936        320 MTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSK-----EHKTWAGRLRELLAKYEEVELLLQIGE  394 (439)
T ss_pred             CCcchHHHhhhhcceEEEECHHHHhCCCCCccCCcccccccchhhCCH-----HHHHHHHHHHHHHHcchHHHHHHHhcC
Confidence            689999999999999999999999999999999999999999998774     9999996   56666666677777888


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL  124 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll  124 (154)
                      |. |.|+..|.++.   +.+.| ++||+|+.++++++++++..+..++
T Consensus       395 y~~g~d~~~d~ai~---~~~~i-~~fL~Q~~~~~~~~~~~~~~l~~~~  438 (439)
T PRK06936        395 YQKGQDKEADQAIE---RIGAI-RGFLRQGTHELSHFNETLNLLETLT  438 (439)
T ss_pred             ccCCCCHHHHHHHH---hHHHH-HHHcCCCCCCCCCHHHHHHHHHHHh
Confidence            87 88877776543   45567 9999999999999999999887765

>PRK06820 type III secretion system ATPase; Validated

Probab=99.96  E-value=5.5e-30  Score=221.58  Aligned_cols=115  Identities=21%  Similarity=0.368  Sum_probs=102.2

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHH---HHHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVS---NQLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a---~~~~~~y~~~~eL~~ig~   77 (154)
                      |+|||+|++++||||||||||+||++||||||||+.|+||+|+.++++     +|.+++   +++++.|++.++|+++|.
T Consensus       321 ~~dpI~d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~~~~~~~-----~~~~~a~~~r~~l~~y~e~~~li~~G~  395 (440)
T PRK06820        321 MNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSA-----GQLAMAQKLRRMLACYQEIELLVRVGE  395 (440)
T ss_pred             CCCcchhhhccccceEEEECHHHHhCCCCCccCCcccccccchhhCCH-----HHHHHHHHHHHHHHhhhHHHHHHHhhC
Confidence            689999999999999999999999999999999999999999998875     777777   478888888888888999


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL  124 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll  124 (154)
                      |. |.|+..|..   +.+++.| ++||+|+.++.++++++++.+|+++
T Consensus       396 y~~g~d~~~d~~---i~~~~~i-~~fL~Q~~~e~~~~~~~~~~l~~~~  439 (440)
T PRK06820        396 YQAGEDLQADEA---LQRYPAI-CAFLQQDHSETAHLETTLEHLAQVV  439 (440)
T ss_pred             ccCCCCHHHHHH---HHhhHHH-HHHhCCCCCCCCCHHHHHHHHHHHh
Confidence            98 877765554   4466667 9999999999999999999999886

>PRK09099 type III secretion system ATPase; Provisional

Probab=99.96  E-value=6.7e-30  Score=221.17  Aligned_cols=115  Identities=23%  Similarity=0.341  Sum_probs=100.3

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHH---HHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQ---LYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~---~~~~y~~~~eL~~ig~   77 (154)
                      ++|||+|++++|+||||||||+||++||||||||+.|+||+|+.+++     ++|.+++++   +++.|++.++++++|.
T Consensus       321 ~~dpI~d~~~~i~DG~ivLsr~La~~g~yPAIDvl~S~SR~~~~~~~-----~~~~~~a~~lr~~la~y~e~e~li~iG~  395 (441)
T PRK09099        321 GSDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMPQVVP-----REHVQAAGRLRQLLAKHREVETLLQVGE  395 (441)
T ss_pred             cCCcchhhhheecceEEEEcHHHHhCCCCCccCCccccCccchhcCC-----HHHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence            58999999999999999999999999999999999999999999877     499999964   5566666666677777


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL  124 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll  124 (154)
                      |. |.|+++|+++.   +++.| ++||+|+.++++++++++..+..++
T Consensus       396 y~~g~d~~~d~~i~---~~~~i-~~fL~Q~~~~~~~~~~t~~~l~~~~  439 (441)
T PRK09099        396 YRAGSDPVADEAIA---KIDAI-RDFLSQRTDEYSDPDATLAALAELS  439 (441)
T ss_pred             ccCCCChhHHHHHH---HHHHH-HHHhCCCCCCCCCHHHHHHHHHHHh
Confidence            77 99999998744   67778 8999999999999999999887765

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=99.96  E-value=5.4e-30  Score=221.81  Aligned_cols=115  Identities=25%  Similarity=0.424  Sum_probs=104.7

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHH---HHHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVS---NQLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a---~~~~~~y~~~~eL~~ig~   77 (154)
                      |+|||+|++++|+||||||||+||++||||||||+.|+||+|+.++++     +|.+.+   +++++.|++.++|+++|+
T Consensus       335 ~~dpi~d~~~~i~dg~ivLsr~la~~g~yPAID~l~S~SR~~~~~~~~-----~~~~~~~~~r~~l~~Y~~~~dli~ig~  409 (455)
T PRK07960        335 QQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIDE-----QHYARVRQFKQLLSSFQRNRDLVSVGA  409 (455)
T ss_pred             CCcchHHHhhhhcceEEEECHHHHhCCCCCccCcCcccCcCccccCCH-----HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            689999999999999999999999999999999999999999998875     777776   589999999999999999


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL  124 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll  124 (154)
                      |. |.|++.|.+...   .+.| +.||+|+.++..+++++++.+.+++
T Consensus       410 y~~G~d~~~D~ai~~---~~~i-~~fl~Q~~~e~~~~~~~~~~l~~~~  453 (455)
T PRK07960        410 YAKGSDPMLDKAIAL---WPQL-EAFLQQGIFERADWEDSLQALERIF  453 (455)
T ss_pred             ccCCCCHHHHHHHHh---HHHH-HHHhCCCCCCCcCHHHHHHHHHHhh
Confidence            97 999998887654   3567 9999999999999999999887765

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=99.96  E-value=7.4e-30  Score=219.82  Aligned_cols=114  Identities=25%  Similarity=0.393  Sum_probs=101.4

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~   77 (154)
                      ++|||+|++++||||||||||+||++||||||||+.|+||+|+.++++     +|++++.   ++++.|++.++++++|.
T Consensus       300 ~~dpi~d~~~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~~~~~~~-----~~~~~a~~~r~~l~~y~e~~~~~~~g~  374 (418)
T TIGR03498       300 HNEPVADAVRGILDGHIVLDRAIAERGRYPAINVLASVSRLAPRVWSP-----EERKLVRRLRALLARYEETEDLIRLGA  374 (418)
T ss_pred             CCCcchhhhheeeeeEEEECHHHHhCCCCCccCCcccccccchhhcCH-----HHHHHHHHHHHHHHhhHHHHHHHHhhC
Confidence            689999999999999999999999999999999999999999998885     8999986   78888888888888888


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQL  123 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~l  123 (154)
                      |+ |.|+..|++   +.+++.| ++||+|+.+++++++++++.+.++
T Consensus       375 y~~g~d~~~d~a---i~~~~~i-~~fl~Q~~~~~~~~~~~~~~l~~~  417 (418)
T TIGR03498       375 YRKGSDPELDEA---IRLVPKI-YEFLTQGPDEPTSLQDPFADLAAI  417 (418)
T ss_pred             CcCCCCHHHHHH---HHhHHHH-HHHhCCCCCCCCCHHHHHHHHHhh
Confidence            87 777776665   4466777 999999999999999999987765

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK08149 ATP synthase SpaL; Validated

Probab=99.96  E-value=1e-29  Score=219.28  Aligned_cols=115  Identities=23%  Similarity=0.299  Sum_probs=102.3

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~   77 (154)
                      ++|||+|++++|+||||||||+||++||||||||+.|+||+|+.+++     ++|+++++   ++++.|++.++++++|+
T Consensus       309 ~~dpi~d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~~~~~~-----~~~~~~a~~~r~~l~~y~e~e~li~~G~  383 (428)
T PRK08149        309 EPDPIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRVFGQVTD-----PKHRQLAAAFRKLLTRLEELQLFIDLGE  383 (428)
T ss_pred             CCCCchhhhheeccEEEEEcHHHHhCCCCCcccCccccccchhhhcC-----HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999999999999999999877     48999985   67777888888888899


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL  124 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll  124 (154)
                      |+ |.|+..|.++.   +++.| +.||+|+.++++++++++..+.+++
T Consensus       384 y~~g~~~~~d~ai~---~~~~i-~~fl~Q~~~~~~~~~~~~~~l~~~~  427 (428)
T PRK08149        384 YRRGENADNDRAMD---KRPAL-EAFLKQDVAEKSSFSDTLERLNEFA  427 (428)
T ss_pred             CCCCCCHHHHHHHH---hHHHH-HHHhCCCCCCCCCHHHHHHHHHHHh
Confidence            96 88888887744   56677 9999999999999999999887764

>CHL00060 atpB ATP synthase CF1 beta subunit

Probab=99.96  E-value=3e-29  Score=218.79  Aligned_cols=128  Identities=23%  Similarity=0.338  Sum_probs=110.8

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHH-HHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRL-MKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVV   79 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~-~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~   79 (154)
                      +||||+|++++||||||||||+||++||||||||+.|+||+ |+.+++     ++|.++++++++.|++++++.++.+..
T Consensus       330 ~tdPI~d~~~silDGhIvLsr~La~~G~yPAIDvl~SvSR~~~~~~v~-----~~h~~~a~~~r~~la~y~e~e~li~~~  404 (494)
T CHL00060        330 LTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVG-----EEHYETAQRVKQTLQRYKELQDIIAIL  404 (494)
T ss_pred             CCCcchHhhhhhcceEEEEcHHHHhCCCCCCcCCccchhhhcccccCC-----HHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            68999999999999999999999999999999999999999 677766     499999998888888888888888776


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCC----------CCCCHHHHHHHHHHHHhhCChHhhcCCChh
Q psy5596          80 GEEALTPDDLLYLEFLTKFEKNFVSQGNY----------ENRTVYESLDIGWQLLRIFPKEMLKRIPAS  138 (154)
Q Consensus        80 G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~----------~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~  138 (154)
                      |.+++++++...+.+++.| +.||+|++|          +.+++++++..+..++.    |.++.+|++
T Consensus       405 g~~~ls~~~~~~i~~~~~i-~~fL~Q~~f~~e~ft~~~~~~~~~~~~~~~l~~i~~----g~~~~~~~~  468 (494)
T CHL00060        405 GLDELSEEDRLTVARARKI-ERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILS----GELDGLPEQ  468 (494)
T ss_pred             CcccCCHHHHHHHHhHHHH-HHHhcCCcchhhcccCCCCcccCHHHHHHHHHHHhC----CCccCCCHH
Confidence            7678889899999999999 899999955          88999999998777753    345555543

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=99.96  E-value=1.4e-29  Score=218.44  Aligned_cols=115  Identities=28%  Similarity=0.422  Sum_probs=100.6

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~   77 (154)
                      ++|||+|++++|+||||||||+||++||||||||+.|+||+|+.+++     ++|.++++   ++++.|++.++++++|.
T Consensus       303 ~~~pi~~~~~~i~dg~i~Lsr~la~~g~yPAId~~~S~SR~~~~~~~-----~~~~~~a~~~~~~l~~y~e~~~li~~g~  377 (422)
T TIGR02546       303 MNDPIADEVRSILDGHIVLSRALAERNHYPAIDVLASLSRVMSQVVS-----TEHRRAAGKLRRLLATYKEVELLIRLGE  377 (422)
T ss_pred             CCCCchhhhhccccEEEEEcHHHHhCCCCCccCCccccccchhhhCC-----HHHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence            68999999999999999999999999999999999999999999876     48999986   56666666667777788


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL  124 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll  124 (154)
                      |. |.|++.|.++..   ++.| ++||+|+.++.+++++++..++.++
T Consensus       378 y~~g~d~~~d~~i~~---~~~i-~~fl~Q~~~~~~~~~~~~~~l~~~~  421 (422)
T TIGR02546       378 YQPGSDPETDDAIDK---IDAI-RAFLRQSTDEYSPYEETLEQLHALV  421 (422)
T ss_pred             CcCCCCHHHHHHHHh---HHHH-HHHhCCCCCCCCCHHHHHHHHHHHh
Confidence            87 999988877554   5557 8999999999999999999988775

>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha

Probab=99.96  E-value=5.4e-29  Score=217.52  Aligned_cols=131  Identities=22%  Similarity=0.266  Sum_probs=116.1

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      ++|||||++++||||||||||+||++||||||||+.|+||+|+.++.     ++|++++++++..|++++++..+.++ |
T Consensus       326 ~s~pI~d~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~~~~~~-----~~~~~~a~~lr~~la~y~e~e~~~~~-G  399 (497)
T TIGR03324       326 ISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGGKAQL-----AAYRAVAGDLKLAYAQFEELETFARF-G  399 (497)
T ss_pred             CCCcchHhheeccceEEEEcHHHHhCCCCCcCCCccccccCCccccC-----HHHHHHHHHHHHHHHHHHHHHHHHHh-h
Confidence            58999999999999999999999999999999999999999999876     49999999988888888888888777 6


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhh
Q psy5596          81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEF  143 (154)
Q Consensus        81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~  143 (154)
                      .+ ++++....+.+++.| ++||+|+.++++++++++..+..+    ..+.++.+|.+-|.+|
T Consensus       400 ~~-ld~~~~~~i~~~~~i-~~fL~Q~~~~~~~~~~~~~~l~~~----~~g~~d~~~~~~v~~~  456 (497)
T TIGR03324       400 AR-LDENTRKTIEHGRRI-RACLKQTQSSPLTVPQQIAILLAL----TNGLFDGVDLDAMPEA  456 (497)
T ss_pred             hh-cCHHHHHHHHhHHHH-HHHhCCCCCCCCCHHHHHHHHHHH----hcCCCCCCCHHHHHHH
Confidence            44 888888999999999 999999999999999998876654    4566778888877776

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.

>PRK06315 type III secretion system ATPase; Provisional

Probab=99.96  E-value=1.6e-29  Score=218.86  Aligned_cols=115  Identities=21%  Similarity=0.329  Sum_probs=103.3

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~   77 (154)
                      ++|||+|++++|+||||||||+||++||||||||+.|+||+|+.++++     +|.++++   ++++.|++.++|+++|.
T Consensus       323 ~~dpi~d~~~~i~dg~ivLsr~la~~g~~Paidv~~S~SR~~~~~~~~-----~~~~~a~~~r~~l~~y~e~e~li~~g~  397 (442)
T PRK06315        323 MNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPE-----EQRRIIGKAREVLAKYKANEMLIRIGE  397 (442)
T ss_pred             CCcccHHHhhhhcceEEEEeccHHHcCCCCCccchhhhcccchhcCCH-----HHHHHHHHHHHHHHhhhhhHHHHHhcC
Confidence            689999999999999999999999999999999999999999998874     8999985   68889999999999999


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL  124 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll  124 (154)
                      |. |.|+..|.++.   +++.| ++||+|+.+++++++++++.+.+++
T Consensus       398 y~~g~d~~~d~ai~---~~~~i-~~fL~Q~~~e~~~~~~~~~~l~~~~  441 (442)
T PRK06315        398 YRRGSDREVDFAID---HIDKL-NRFLKQDIHEKTNYEEAAQQLRAIF  441 (442)
T ss_pred             CcCCCCHHHHHHHH---HHHHH-HHHhCCCCCCCCCHHHHHHHHHHHh
Confidence            98 87777666644   66667 9999999999999999999887765

>PRK13343 F0F1 ATP synthase subunit alpha; Provisional

Probab=99.96  E-value=1e-28  Score=216.30  Aligned_cols=132  Identities=23%  Similarity=0.289  Sum_probs=115.1

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      ++|||||+++|||||||||||+||++||||||||+.|+||+|+.++.     ++|++++++++..|++++++..+.++ |
T Consensus       326 ~s~pI~~~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~~~~~~-----~~~~~~a~~lr~~la~y~e~e~~~~~-G  399 (502)
T PRK13343        326 LSAYIPTNLISITDGQIYLDSDLFAAGQRPAVDVGLSVSRVGGKAQH-----PAIRKESGRLRLDYAQFLELEAFTRF-G  399 (502)
T ss_pred             CCCcchhhhhcccceEEEECHHHHhCCCCCccCCccchhccCccccC-----HHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence            58999999999999999999999999999999999999999999876     49999999888888888888887776 4


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhhC
Q psy5596          81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFY  144 (154)
Q Consensus        81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~~  144 (154)
                      .+ ++++....+.+++.| ++||+|+.++++++++++..+..+    .++.++.+|.+-|.+|.
T Consensus       400 ~~-ld~~~~~~i~~~~~i-~~~L~Q~~~~~~~~~~~~~~l~~~----~~g~~~~~~~~~i~~~~  457 (502)
T PRK13343        400 GL-LDAGTQKQITRGRRL-RELLKQPRFSPLSVEEQIALLYAL----NEGLLDAVPLANIQAFE  457 (502)
T ss_pred             hh-cCHHHHHHHHHHHHH-HHHhcCCCCCCCCHHHHHHHHHHH----hcCCccCCCHHHHHHHH
Confidence            43 777777888999999 889999999999999888866654    45677888888887773

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=99.96  E-value=3.7e-29  Score=215.28  Aligned_cols=114  Identities=28%  Similarity=0.499  Sum_probs=101.8

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~   77 (154)
                      ++|||+|++++|+||||||||+||++||||||||+.|+||+|+.+++     ++|.++++   ++++.|++.++++++|.
T Consensus       295 ~~dpi~~~~~si~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~~~~-----~~~~~~a~~~r~~l~~y~e~~~li~~g~  369 (413)
T TIGR03497       295 MNEPIADAVRGILDGHIVLSRELAAKNHYPAIDVLASVSRVMNEIVS-----EEHKELAGKLRELLAVYKEAEDLINIGA  369 (413)
T ss_pred             CCCcchhhccccccEEEEECHHHHhCCCCCccCCccccccCccccCC-----HHHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence            68999999999999999999999999999999999999999999877     49999986   47888888888999999


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQL  123 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~l  123 (154)
                      |. |.|+..|.++.   +++.| +.||+|+.+++++++++++.+.++
T Consensus       370 ~~~g~d~~~~~~i~---~~~~i-~~fl~Q~~~~~~~~~~~~~~l~~~  412 (413)
T TIGR03497       370 YKRGSNPKIDEAIR---YIEKI-NSFLKQGIDEKFTFEETVQLLKTL  412 (413)
T ss_pred             cccCCCHHHHHHHH---HHHHH-HHHhCCCCCCCCCHHHHHHHHHhh
Confidence            99 88877777655   55557 999999999999999999977665

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=99.96  E-value=3.8e-29  Score=215.11  Aligned_cols=110  Identities=27%  Similarity=0.496  Sum_probs=99.5

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~   77 (154)
                      ++|||+|++++|+||||||||+||++||||||||+.|+||+++.++++     +|.++++   ++++.|++.++++++|.
T Consensus       297 ~~dpi~~~~~~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~~~~~-----~~~~~a~~~r~~l~~y~e~~~l~~~g~  371 (411)
T TIGR03496       297 QQDPIADAARAILDGHIVLSRELAEQGHYPAIDILASISRVMPDVVSP-----EHRQAARRFKQLLSRYQENRDLISIGA  371 (411)
T ss_pred             CCCcchhhhcccccEEEEEchhHHhCCCCCccCCCcccccchhhhCCH-----HHHHHHHHHHHHHHHhHHHHHHHHhcC
Confidence            689999999999999999999999999999999999999999998774     9999996   78888888889999999


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDI  119 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~  119 (154)
                      |+ |.|++.|.+   +.+++.| +.||+|+.+++.+++++++.
T Consensus       372 y~~g~d~~~d~~---i~~~~~i-~~fl~Q~~~~~~~~~~~~~~  410 (411)
T TIGR03496       372 YQAGSDPELDQA---IALYPRI-EAFLQQGMRERASFEESLEA  410 (411)
T ss_pred             CcCCCCHHHHHH---HHHHHHH-HHHhCCCCCCCCCHHHHHhh
Confidence            97 888776654   5678888 99999999999999999874

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK14698 V-type ATP synthase subunit A; Provisional

Probab=99.95  E-value=5e-29  Score=232.25  Aligned_cols=125  Identities=16%  Similarity=0.263  Sum_probs=113.3

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccC---cHHHHHHHHHHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMT---RKDHSDVSNQLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~---~~~~~~~a~~~~~~y~~~~eL~~ig~   77 (154)
                      |+|||||+|++|+||||+|||+||++||||||||+.|+||+|+.+ ++||.   .++|.+++++++++|+++++++++.+
T Consensus       828 ~s~Pv~~~~~~i~dg~i~L~~~La~~g~~PAId~l~S~Sr~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~el~~~i~  906 (1017)
T PRK14698        828 FSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAV-KDWWHKNVDPEWKAMRDKAMELLQKEAELQEIVR  906 (1017)
T ss_pred             CCCcHHHHHHHHhCcEEecCHHHHhCCCCCCcCcccchhhhcccc-cchhccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999985 55664   37999999999999999999999999


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhh
Q psy5596          78 VVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRI  126 (154)
Q Consensus        78 ~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~  126 (154)
                      ++|.+.+++.|+..+..+++|++.||+|++|+++|..++++++..+|..
T Consensus       907 l~g~~~l~~~d~~~~~~~~~i~e~fL~Q~~~~~~d~~~~~~~~~~~l~~  955 (1017)
T PRK14698        907 IVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRV  955 (1017)
T ss_pred             hcCCCCCCHHHHHHHHHhHHHHhccCCCCCCCccccCCCHHHHHHHHHH
Confidence            9998899999999999999998899999999997777777776666553

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=99.95  E-value=7.6e-29  Score=214.68  Aligned_cols=115  Identities=17%  Similarity=0.266  Sum_probs=103.6

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~   77 (154)
                      ++|||+|++++|+||||||||+||++||||||||+.|+||+|+.++++     +|+++++   ++++.|++.++|+++|.
T Consensus       324 ~~dpI~d~~~~i~Dg~ivLsr~la~~g~~PAIDv~~S~SR~~~~~~~~-----~~~~~a~~~r~~la~y~e~e~li~ig~  398 (450)
T PRK06002        324 HNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLARHAWTP-----EQRKLVSRLKSMIARFEETRDLRLIGG  398 (450)
T ss_pred             CCCccHHHHHhhcceEEEEcHHHHhCCCCCccCCccccCcccccccCH-----HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            589999999999999999999999999999999999999999998764     8998885   67777888888899999


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHh
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLR  125 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~  125 (154)
                      |. |+|+..|+++..   .+.| ++||+|+..++++ ++++..+.++++
T Consensus       399 y~~G~d~~~D~ai~~---~~~i-~~fL~Q~~~~~~~-~~~~~~l~~~~~  442 (450)
T PRK06002        399 YRAGSDPDLDQAVDL---VPRI-YEALRQSPGDPPS-DDAFADLAAALK  442 (450)
T ss_pred             cccCCChHHHHHHHh---HHHH-HHHhCCCCCCCCC-HHHHHHHHHHHh
Confidence            99 999999998665   5557 9999999999999 999998888875

>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit

Probab=99.95  E-value=2.4e-28  Score=214.32  Aligned_cols=131  Identities=27%  Similarity=0.312  Sum_probs=112.8

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      ++|||||++++||||||||||+||++||||||||+.|+||+|+.++.     ++|.+++++++..|++++++.++.++ |
T Consensus       325 ~s~pI~~~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~~~~~-----~~~~~~a~~lr~~la~y~e~~~l~~~-g  398 (501)
T TIGR00962       325 VSAYIPTNVISITDGQIFLESDLFNSGIRPAINVGLSVSRVGGAAQI-----KAMKQVAGSLRLELAQYRELEAFSQF-A  398 (501)
T ss_pred             CCCcchHhhhhhcceEEEEcHhHHhCCCCCccCCccchhccCccccC-----HHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence            58999999999999999999999999999999999999999999876     49999999999999999999999988 5


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhh
Q psy5596          81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEF  143 (154)
Q Consensus        81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~  143 (154)
                       .++++++...+.+++.| +.||+|+.++++++++++..++.+    ..|.++.+|.+-+..|
T Consensus       399 -~~ld~~~~~~l~~~~~i-~~fL~Q~~~~~~~~~~q~~~l~a~----~~G~l~~v~~~~i~~~  455 (501)
T TIGR00962       399 -SDLDEATKAQLERGKRL-VELLKQPQYKPLPVEEQVVILYAG----TKGYLDDIPVDKVRKF  455 (501)
T ss_pred             -ccCCHHHHHHHHHHHHH-HHHhcCCCCCCcCHHHHHHHHHHH----hcCCcccccHHHHHHH
Confidence             56888888899999999 889999999999988887655533    3445556665555544

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=99.95  E-value=1.6e-28  Score=212.00  Aligned_cols=115  Identities=22%  Similarity=0.366  Sum_probs=101.6

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~   77 (154)
                      |+|||+|++++|+||||||||+||++||||||||+.|+||+|+.++++     +|+++++   ++++.|++.++++++|.
T Consensus       313 ~~dpI~d~~~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~~~~~~~-----~~~~~a~~~r~~la~y~e~e~~i~~g~  387 (432)
T PRK06793        313 LNGPVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIMEEIVSP-----NHWQLANEMRKILSIYKENELYFKLGT  387 (432)
T ss_pred             CCCcchHHhhhhcceEEEEcHHHHhCCCCCccCCCcccCcCccccCCH-----HHHHHHHHHHHHHHhChHHHHHHHhCC
Confidence            689999999999999999999999999999999999999999998774     8999884   68888888888899999


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQL  123 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~l  123 (154)
                      |. |.++..|.++..  +.+.| +.||+|+..++++++++++.+.++
T Consensus       388 y~~g~~~~~d~ai~~--~~~~i-~~fl~Q~~~~~~~~~~~~~~l~~~  431 (432)
T PRK06793        388 IQENAENAYIFECKN--KVEGI-NTFLKQGRSDSFQFDDIVEAMHHI  431 (432)
T ss_pred             ccCCCCHHHHHHHHH--hHHHH-HHHhCCCCCCCCCHHHHHHHHHhh
Confidence            98 888887777551  34456 999999999999999999977654

>CHL00059 atpA ATP synthase CF1 alpha subunit

Probab=99.95  E-value=1.3e-27  Score=208.22  Aligned_cols=131  Identities=23%  Similarity=0.236  Sum_probs=111.9

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      ++|||||++++||||||||||+||++||||||||+.|+||+|+.++.+     +|++++.+++..|++++++..+.++. 
T Consensus       305 ~s~pI~~~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRvg~~aq~~-----~~~~~a~~lr~~la~y~e~e~~~~~~-  378 (485)
T CHL00059        305 VSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIK-----AMKQVAGKLKLELAQFAELEAFAQFA-  378 (485)
T ss_pred             CCCcchHhhhhhcceEEEEcHHHHhCCCCCCcCcccchhcCCchhhcH-----HHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence            589999999999999999999999999999999999999999998774     99999999999999999999999885 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhh
Q psy5596          81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEF  143 (154)
Q Consensus        81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~  143 (154)
                       ..++++....+.+++.| +.||+|+.++++++++++..++..    .+|.++.+|.+-+..|
T Consensus       379 -~~~d~~~~~~i~~~~~i-~~~L~Q~~~~~~~~~e~~~~l~a~----~~g~l~~~~~~~v~~~  435 (485)
T CHL00059        379 -SDLDKATQNQLARGQRL-RELLKQSQSAPLTVEEQVATIYTG----TNGYLDSLEIGQVRKF  435 (485)
T ss_pred             -cCCCHHHHHHHHhHHHH-HHHhcCCCCCCCCHHHHHHHHHHh----ccCCcCccCHHHHHHH
Confidence             34555555567788888 999999999999999988765533    4556677777766665

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=99.94  E-value=1e-27  Score=207.84  Aligned_cols=115  Identities=30%  Similarity=0.433  Sum_probs=98.5

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~   77 (154)
                      ++|||+|++++|+||||||||+||++||||||||+.|+||+|+.++++     +|.++++   ++++.|++.++++++|.
T Consensus       321 ~~dpi~d~~~~i~dG~ivLsr~la~~~~~PAId~~~S~SR~~~~~~~~-----~~~~~a~~~r~~l~~y~e~~~li~ig~  395 (440)
T TIGR01026       321 MNEPIADSVRGILDGHIVLSRALAQRGHYPAIDVLASISRLMTAIVSE-----EHRRAARKFRELLSKYKDNEDLIRIGA  395 (440)
T ss_pred             CCcchhhhhccccceEEEEecchhhCCccCccCCCcccccCccccCCH-----HHHHHHHHHHHHHHhhHHHHHHHHhhc
Confidence            589999999999999999999999999999999999999999998884     9999986   56666666666777777


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL  124 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll  124 (154)
                      |. |.|+..|..   +.+.+.| +.||+|+.+++++++++++.+..++
T Consensus       396 y~~g~d~~~d~~---i~~~~~i-~~fL~Q~~~~~~~~~~~~~~l~~~~  439 (440)
T TIGR01026       396 YQRGSDRELDFA---IAKYPKL-ERFLKQGINEKVNFEESLQQLEEIF  439 (440)
T ss_pred             cccCCCHHHHHH---HHHHHHH-HHHcCCCCCCCCCHHHHHHHHHHhh
Confidence            76 777655554   4456778 9999999999999999999887765

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PRK07165 F0F1 ATP synthase subunit alpha; Validated

Probab=99.94  E-value=6.6e-27  Score=204.54  Aligned_cols=121  Identities=21%  Similarity=0.188  Sum_probs=102.1

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      +||||||+++|||||||||||+||++||||||||+.|+||+|+.++++     .|.++++.+...|++++++.++.++ |
T Consensus       302 is~pIpdnv~sItDGqIvLsr~L~~~G~~PAIDvl~SvSRv~~~~q~~-----~~~~~a~~~r~~la~Y~e~e~~~~~-~  375 (507)
T PRK07165        302 ITSLISSNIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTGSSVQSK-----TITKVAGEISKIYRAYKRQLKLSML-D  375 (507)
T ss_pred             CCCcchhhhccccCeEEEEcHHHHhCCCCCCcCCccchhhccccccCH-----HHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            589999999999999999999999999999999999999999998774     8899998777777777777777766 4


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHH----HHHHHhhCCh
Q psy5596          81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDI----GWQLLRIFPK  129 (154)
Q Consensus        81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~----~~~ll~~~~~  129 (154)
                      . .+++++...+.+++.| ++||+|+.+++++..+.+..    .|.+|..+|.
T Consensus       376 ~-~ld~~~~~~l~~g~~i-~~~L~Q~~~~~~~~~~~~~~~~~~~~~~l~~~~~  426 (507)
T PRK07165        376 Y-DLNKETSDLLFKGKMI-EKMFNQKGFSLYSYRFVLLISKLISWGLLKDVKD  426 (507)
T ss_pred             H-hCCHHHHHHHHHHHHH-HHHhCCCCCCCCCHHHHHHHHHHHHhhhhhhCCc
Confidence            4 4999999999999999 99999999999987655543    3444554443

>PRK05922 type III secretion system ATPase; Validated

Probab=99.94  E-value=2.5e-27  Score=204.72  Aligned_cols=115  Identities=23%  Similarity=0.286  Sum_probs=103.5

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHH---HHHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVS---NQLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a---~~~~~~y~~~~eL~~ig~   77 (154)
                      ++|||+|++|+||||||||||+||++| |||||++.|+||+|+.++++     +|++++   +++++.|++.++++++|.
T Consensus       314 ~~dpi~d~~rsilDGhIvLsr~la~~~-~PAIDvl~S~SR~~~~~~~~-----~~~~~a~~~r~~l~~y~e~edli~~G~  387 (434)
T PRK05922        314 HPDIFTDYLKSLLDGHFFLTPQGKALA-SPPIDILTSLSRSARQLALP-----HHYAAAEELRSLLKAYHEALDIIQLGA  387 (434)
T ss_pred             CCCccccchhhhcCcEEEEcHHHHhCC-CCCcCCccccccCCccccCH-----HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            369999999999999999999999988 99999999999999998874     899998   579999999999999999


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHh
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLR  125 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~  125 (154)
                      |. |.|+..|.++...+   .| ++||+|+..+.++++++++.+.+++.
T Consensus       388 y~~g~d~~~d~a~~~~~---~i-~~fl~Q~~~~~~~~~~~~~~l~~~~~  432 (434)
T PRK05922        388 YVPGQDAHLDRAVKLLP---SI-KQFLSQPLSSYCALHNTLKQLEALLK  432 (434)
T ss_pred             CCccCCHHHHHHHHhHH---HH-HHHhCCCCCCCCCHHHHHHHHHHHHh
Confidence            98 99888888766544   45 99999999999999999998887764

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.94  E-value=1e-26  Score=201.54  Aligned_cols=116  Identities=31%  Similarity=0.503  Sum_probs=105.3

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~   77 (154)
                      |+|||+|++++|+||||+||++||++||||||||+.|+||+|+.++++     +|+++++   ++++.|++.++++++|.
T Consensus       316 m~e~i~d~v~~i~dG~Ivls~~la~~g~~PAIdv~~S~SR~~~~~~~~-----~~~~~a~~~r~~l~~y~e~~~li~~g~  390 (438)
T PRK07721        316 MNEPIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRVMNHIVSP-----EHKEAANRFRELLSTYQNSEDLINIGA  390 (438)
T ss_pred             CCchhhhhEEEecCEEEEEeccHHHCCCCCccCCcccccccccccCCH-----HHHHHHHHHHHHHHHhHHHHHHHHhhC
Confidence            579999999999999999999999999999999999999999998774     9999996   78999999999999999


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHh
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLR  125 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~  125 (154)
                      |. |.|+..|++..   +++.| +.||+|+.+++.++++++..++.+++
T Consensus       391 y~~g~~~~~d~a~~---~~~~~-~~fl~Q~~~~~~~~~~~~~~l~~~~~  435 (438)
T PRK07721        391 YKRGSSREIDEAIQ---FYPQI-ISFLKQGTDEKATFEESIQALLSLFG  435 (438)
T ss_pred             CcCCCCHHHHHHHH---hHHHH-HHHhCCCCCCCCCHHHHHHHHHHHHh
Confidence            99 87777777644   56778 99999999999999999999998864

>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]

Probab=99.92  E-value=8.3e-26  Score=190.76  Aligned_cols=128  Identities=22%  Similarity=0.344  Sum_probs=114.1

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHH-HHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLM-KSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVV   79 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~-~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~   79 (154)
                      +|||.|.++.++||+.+||||++|+.|+|||||||.|.||.+ +.+++     ++|+++|+++.+.|++|++|++|+++.
T Consensus       309 lTDPapattFaHLDat~vLsR~ia~~GIyPAvDPL~StSr~l~p~ivG-----e~Hy~va~~vq~iLqrYkeLqDIIaIL  383 (468)
T COG0055         309 LTDPAPATTFAHLDATTVLSRQIAALGIYPAVDPLDSTSRALDPKIVG-----EEHYEVAREVQSILQRYKELQDIIAIL  383 (468)
T ss_pred             CCCcchhhhhhhcccceeeeHhHHhcCCCcccCcccccccccCccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999999999999999 57777     499999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCC----------CCHHHHHHHHHHHHhhCChHhhcCCChh
Q psy5596          80 GEEALTPDDLLYLEFLTKFEKNFVSQGNYEN----------RTVYESLDIGWQLLRIFPKEMLKRIPAS  138 (154)
Q Consensus        80 G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~----------~~~~~sl~~~~~ll~~~~~~~~~~i~~~  138 (154)
                      |.|+|+++|+.++.+|++| +.||+|+++..          +++.+++.-..++    -.|+++.+|+.
T Consensus       384 GmdELseedk~~V~rArki-~~FlSQpF~vAE~FTg~pG~~V~l~dti~~fk~I----l~G~yd~~pE~  447 (468)
T COG0055         384 GMDELSEEDKLTVARARKI-QRFLSQPFFVAEVFTGSPGKYVPLKDTIRGFKRI----LEGKYDHLPEQ  447 (468)
T ss_pred             CchhcChhHHHHHHHHHHH-HHHhcCcchhhheecCCCceeeeHHHHHHHHHHH----hCCCcccCCHH
Confidence            9999999999999999999 99999999875          4455555544444    34677888875

>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]

Probab=99.92  E-value=2.7e-25  Score=193.17  Aligned_cols=126  Identities=20%  Similarity=0.287  Sum_probs=119.8

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCc---HHHHHHHHHHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTR---KDHSDVSNQLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~---~~~~~~a~~~~~~y~~~~eL~~ig~   77 (154)
                      |++||+.+|++|+..||.||++||+++|||||||+.|+|.|.+.+ ++||..   ++|..++..+++.+++..+|+++++
T Consensus       396 fSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~syS~Y~~~~-~~~~~~~v~~~~~~~r~~a~~~Lq~e~elqeiv~  474 (588)
T COG1155         396 FSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSYSLYTEDL-RSWYDENVSPEWGALRDQAMEILQRESELQEIVQ  474 (588)
T ss_pred             cCcccchheeeeeeeecccchhhhhcccCcccChHHHHHHHHHHH-HHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999984 668763   5899999999999999999999999


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhC
Q psy5596          78 VVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIF  127 (154)
Q Consensus        78 ~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~  127 (154)
                      .+|.+.+++.++.++..++.|+++|||||+|+++|.+|++.++..||+.+
T Consensus       475 lVG~eal~e~~~~il~va~~ire~fLqQnafd~vD~~~~~~kq~~mm~~i  524 (588)
T COG1155         475 LVGYDALPEKEKSILDVARIIREDFLQQNAFDEIDAYCSLRKQYLMLKAI  524 (588)
T ss_pred             HhCccccchHHHHHHHHHHHHHHHHHhhcccCcccccCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999854

>PTZ00185 ATPase alpha subunit; Provisional

Probab=99.91  E-value=1.3e-24  Score=190.34  Aligned_cols=126  Identities=21%  Similarity=0.194  Sum_probs=110.1

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      ++|||||+++|||||||||||+||++||||||||+.|+||+++.++.+     .|+++|++++..|++++||..+.++ |
T Consensus       361 is~pIptnviSItDGqIvLsr~Lf~~GiyPAIDVl~SvSRvg~~aq~~-----~~k~vAg~lr~~LaqY~El~~fa~f-g  434 (574)
T PTZ00185        361 VTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRVGSSAQNV-----AMKAVAGKLKGILAEYRKLAADSVG-G  434 (574)
T ss_pred             CCCcchHhhhhhcCeEEEEcHHHHhCCCCCCcCCcccccccCCccCCH-----HHHHHHHHHHHHHHHHHHHHHHHhh-c
Confidence            589999999999999999999999999999999999999999998764     8999999999999999999999987 3


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhh
Q psy5596          81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEF  143 (154)
Q Consensus        81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~  143 (154)
                       +++.+   ..+.+++++ .+.|+|+.  +.+.++.+..++.    ...+.++.+|.+.|.+|
T Consensus       435 -sdld~---~~l~rG~r~-~ellkQ~~--p~~~~~qv~~l~a----~~~g~ld~~~~~~i~~~  486 (574)
T PTZ00185        435 -SQVQT---VPMIRGARF-VALFNQKN--PSFFMNALVSLYA----CLNGYLDDVKVNYAKLY  486 (574)
T ss_pred             -chhhH---HHHHhhHHH-HHHHCCCC--CCCHHHHHHHHHH----HhcCCcccCcHHHHHHH
Confidence             23333   678899999 99999997  8887777665553    34567899999999888

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=99.91  E-value=4.7e-25  Score=184.87  Aligned_cols=96  Identities=29%  Similarity=0.536  Sum_probs=82.3

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHH---HHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN---QLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~---~~~~~y~~~~eL~~ig~   77 (154)
                      ++|||+|++++|+||||||||+||++||||||||+.|+||+++.++++     +|.++++   ++++.|++.++++++|.
T Consensus       227 ~~dpi~~~~~~~~dg~ivL~r~la~~g~~PAid~~~S~SR~~~~~~~~-----~~~~~a~~~r~~l~~y~e~~~~i~~g~  301 (326)
T cd01136         227 LNEPIADAVRSILDGHIVLSRALAAAGHYPAIDVLKSISRLMNAVVTP-----EHKEAARKLRELLSAYQEVEDLIRIGA  301 (326)
T ss_pred             CCcchHHhhhhccceEEEEcCcHHHcCCCCCcccccccccCccccCCH-----HHHHHHHHHHHHHHHhHHHHHHHHhcC
Confidence            589999999999999999999999999999999999999999998774     8999985   56666667777777777


Q ss_pred             hh-cCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy5596          78 VV-GEEALTPDDLLYLEFLTKFEKNFVSQ  105 (154)
Q Consensus        78 ~~-G~d~l~d~~~~~~~~~~~i~~~fL~Q  105 (154)
                      |. |.|+..|++   +.+++.| +.||+|
T Consensus       302 y~~g~d~~~d~~---i~~~~~i-~~~l~Q  326 (326)
T cd01136         302 YKKGSDPEVDEA---IKLLPKI-EAFLKQ  326 (326)
T ss_pred             CCCCCCHHHHHH---HHhHHHH-HHHhCC
Confidence            77 777755544   6678888 999998

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>KOG1352|consensus

Probab=99.90  E-value=2e-24  Score=183.59  Aligned_cols=125  Identities=21%  Similarity=0.282  Sum_probs=117.9

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCc--HHHHHHHHHHHHHHHccHhHHHHHhh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTR--KDHSDVSNQLYACYAIGKDVQAMKAV   78 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~--~~~~~~a~~~~~~y~~~~eL~~ig~~   78 (154)
                      |+|||+.+|.+|+..||.||++||++.|||+|||+.|+|+||..+ .+||..  +++..++.+++.++++.++|.++.++
T Consensus       419 FsDPVTsATLgIvQVFWGLDKKLAQRKHFPSiNwliSYSkY~~aL-~~~Ye~~~peF~~lRtk~keilq~eedl~eivQL  497 (618)
T KOG1352|consen  419 FSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRAL-DPFYEKNYPEFVVLRTKAKEILQEEEDLSEIVQL  497 (618)
T ss_pred             cCCcchhhhhheeeehhcccHHHHhhccCCccchhhhHHHHHHHH-HHHHHhcCCCccchHHHHHHHHhhhhhHHHHHHH
Confidence            689999999999999999999999999999999999999999985 567753  68888889999999999999999999


Q ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhh
Q psy5596          79 VGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRI  126 (154)
Q Consensus        79 ~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~  126 (154)
                      +|.+.|++.|+.+++.+..|+++|||||.|.++|.+|++-+...||+.
T Consensus       498 VGK~aL~etdKitLevaklik~DfLqQN~ys~YD~~CPfyKt~~Mlrn  545 (618)
T KOG1352|consen  498 VGKSALAETDKITLEVAKLIKDDFLQQNGYSPYDRFCPFYKTVGMLRN  545 (618)
T ss_pred             hhhhhhhhcchhhHHHHHHHHHHHHhhcCCCchhhcCchHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999873

>KOG1350|consensus

Probab=99.88  E-value=2.4e-23  Score=173.67  Aligned_cols=132  Identities=22%  Similarity=0.316  Sum_probs=115.2

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHH-HHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLM-KSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVV   79 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~-~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~   79 (154)
                      +|||.|..|.++||..-||||.+|+.|+|||||+|.|.||+| +.+++     ++|+++|+.+...+++|+.|++++++.
T Consensus       359 LtDPaPattFaHLDAttVLSR~iaelgIYPAVDPLDStSrimdp~ivG-----~eHY~vA~~Vqk~LQ~YKsLQDIIAIL  433 (521)
T KOG1350|consen  359 LTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRIMDPNIVG-----EEHYNVARGVQKTLQDYKSLQDIIAIL  433 (521)
T ss_pred             cCCCCccceeeccchhhhhhhhhHhcCCccccCCccccccccCccccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999999999999999 58877     499999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHH------HHHHHHHHHHhhCChHhhcCCChh
Q psy5596          80 GEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVY------ESLDIGWQLLRIFPKEMLKRIPAS  138 (154)
Q Consensus        80 G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~------~sl~~~~~ll~~~~~~~~~~i~~~  138 (154)
                      |.|+++++|+.++.++++| +.||+|++.+..-++      -+++.....|..+-.|+++.+|+.
T Consensus       434 GmDELSEeDkLTV~RARKi-qRFLSQPF~VAEvFTG~~GklV~l~~ti~gF~~iL~Ge~D~lPE~  497 (521)
T KOG1350|consen  434 GMDELSEEDKLTVARARKI-QRFLSQPFQVAEVFTGHPGKLVPLEETIRGFKAILEGEYDHLPEQ  497 (521)
T ss_pred             CchhhchhhhhhHHHHHHH-HHHHcCchhhhhhhcCCCCceecHHHHHHHHHHHhcCcccCCchh
Confidence            9999999999999999999 999999987643222      233444445555556788898875

>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]

Probab=99.77  E-value=1.1e-18  Score=150.17  Aligned_cols=130  Identities=26%  Similarity=0.300  Sum_probs=114.3

Q ss_pred             CCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhcC
Q psy5596           2 THPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGE   81 (154)
Q Consensus         2 tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G~   81 (154)
                      +-.||+|+.||+||||+|+.+|+++|..||||+..|+||+.+.++.+     ...+++..+.-.|+++++|..+.++.  
T Consensus       327 SAyIpTNVISITDGQIfl~t~LFn~G~rPAInvGlSVSRvGssAQ~k-----amkkvag~lrl~laqYrel~afsqf~--  399 (504)
T COG0056         327 SAYIPTNVISITDGQIFLETDLFNAGIRPAINVGLSVSRVGSAAQIK-----AMKKVAGSLRLILAQYRELEAFSQFG--  399 (504)
T ss_pred             eeecccceEEecCCcEEeehhhhhcCCCccccCCceeeccchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence            45799999999999999999999999999999999999999987764     88899999999999999999999983  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhh
Q psy5596          82 EALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEF  143 (154)
Q Consensus        82 d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~  143 (154)
                      ++|.+..+..+++++++ .+.|+|+.|.+++.++.+-.++.+    .+|.|+.+|.+-+..|
T Consensus       400 sdLd~~T~~~l~~G~r~-~ellkQ~~~~p~sv~~qv~ilya~----~~G~ld~v~v~~v~~f  456 (504)
T COG0056         400 SDLDKATRKQLERGKRL-TELLKQPQYSPLSVEEQVLILYAG----TNGYLDDVPVEKVADF  456 (504)
T ss_pred             chhCHHHHHHHHccHHH-HHHhcCCCCCCccHHHHHHHHHHH----hcCcccCCcHHHHHHH
Confidence            68999999999999999 999999999999998877766544    4556677776666555

>PRK12608 transcription termination factor Rho; Provisional

Probab=99.69  E-value=2.4e-17  Score=140.43  Aligned_cols=70  Identities=21%  Similarity=0.276  Sum_probs=59.0

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHH
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAM   75 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~i   75 (154)
                      |+|||.|+.++++||||||||+||++|||||||++.|.||.++.++++     +|.+.+.+++..++.+++...+
T Consensus       289 mdd~I~ee~kg~~dg~ivLsR~lA~~~~fPAIDi~~S~sR~~~~l~~~-----~~~~~~~~~R~~l~~~~~~e~~  358 (380)
T PRK12608        289 MDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAKSGTRREELLLDS-----KELEKVRRLRRALASRKPVEAM  358 (380)
T ss_pred             CCcchHHHhcccCCCeEEECHHHHhCCCCCccCcccccCcchhhcCCH-----HHHHHHHHHHHHHHccCHHHHH
Confidence            579999999999999999999999999999999999999999999885     8888886555555444444333

>TIGR00767 rho transcription termination factor Rho

Probab=99.60  E-value=7e-16  Score=132.52  Aligned_cols=69  Identities=17%  Similarity=0.173  Sum_probs=60.2

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHH
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQA   74 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~   74 (154)
                      |+|||.++.++++||||||||+||++||||||||+.|.||.++.++++     +|.+.+..++..+..+.....
T Consensus       324 mdd~i~~e~kg~~~~~ivL~r~la~~~~fPAidi~~S~sR~~~~l~~~-----~~~~~~~~~r~~l~~~~~~~~  392 (415)
T TIGR00767       324 MDEVIFEEFKGTGNMELHLDRKLADRRIFPAIDIKKSGTRKEELLLTP-----EELQKIWVLRKIISPMDSIEA  392 (415)
T ss_pred             CCcchHHHhccccCCeEEECHHHHhCCCCCCcCcccccccchhhcCCH-----HHHHHHHHHHHHHHcCCcHHH
Confidence            579999999999999999999999999999999999999999999884     888888766666666544433

Members of this family differ in the specificity of RNA binding.

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=99.60  E-value=7.1e-16  Score=132.20  Aligned_cols=71  Identities=18%  Similarity=0.196  Sum_probs=60.5

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHH
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMK   76 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig   76 (154)
                      |+|||.+++++++||||+|||+||++||||||||+.|.||.++.++++     +|.+.+..++..+..+++...+-
T Consensus       325 mdd~I~ee~kg~~n~~ivLdR~lA~~r~fPAIDi~~S~sR~~~~l~~~-----~~~~~~~~lR~~l~~~~~~e~~e  395 (416)
T PRK09376        325 MDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRKEELLLSP-----EELQKVWILRKILSPMDEVEAME  395 (416)
T ss_pred             CCccHHHHHhhhcCceEeECHHHHhcCCCCccCccccccccccccCCH-----HHHHHHHHHHHHHHccCcHHHHH
Confidence            579999999999999999999999999999999999999999998884     88888876666665555444333

>PRK12678 transcription termination factor Rho; Provisional

Probab=99.46  E-value=6.5e-14  Score=124.77  Aligned_cols=70  Identities=19%  Similarity=0.222  Sum_probs=60.3

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHH
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAM   75 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~i   75 (154)
                      |+|||.++.++++||||+|||+||++||||||||+.|.||.+..++++     +|.+.+.++...+..+.....|
T Consensus       572 mDd~Ifeefkgtgn~elvLsR~LAerrifPAIDv~~S~SR~ee~l~~~-----~e~~~~~~lRr~l~~~~~~~a~  641 (672)
T PRK12678        572 MDEVIFEEFKGTGNMELKLDRKLADKRIFPAVDVNASGTRKEELLLSP-----DELAIVHKLRRVLSGLDSQQAI  641 (672)
T ss_pred             cCcchHHHHhhccCceeeECHHHHhCCCCCccCCCcCccccchhhCCH-----HHHHHHHHHHHHHHcCCHHHHH
Confidence            578999999999999999999999999999999999999999999884     8888887766666655444333

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.39  E-value=2.7e-13  Score=110.17  Aligned_cols=70  Identities=20%  Similarity=0.214  Sum_probs=56.6

Q ss_pred             CCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHH
Q psy5596           2 THPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMK   76 (154)
Q Consensus         2 tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig   76 (154)
                      .||+.|+.++++||||||||+||..||||||||+.|.||+++.++++     +|+..+.++...+..++++..+-
T Consensus       173 ~~~i~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~~~ll~~~-----~~~~~~~~~r~~~~~~~~~~~~~  242 (249)
T cd01128         173 DDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKEELLLDP-----EELQRMWLLRRVLSDMDPIEAME  242 (249)
T ss_pred             cchHHHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCccchhhCCH-----HHHHHHHHHHHHHHccChHHHHH
Confidence            46999999999999999999999999999999999999999887663     67877755444444444444443

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>KOG1353|consensus

Probab=99.33  E-value=1.1e-12  Score=106.88  Aligned_cols=107  Identities=27%  Similarity=0.335  Sum_probs=96.0

Q ss_pred             CCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhcCC
Q psy5596           3 HPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEE   82 (154)
Q Consensus         3 dPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G~d   82 (154)
                      -.||.++.|| ||+|+|..+|+.+|+.||||+..|+||+.+....     ...++++..++--+++++|+..+.++ | +
T Consensus       229 ayiptnvisi-dgqi~l~t~lfy~girpainvg~svsrvgsaaq~-----kamkqvag~~klelaq~revaafaqf-g-s  300 (340)
T KOG1353|consen  229 AYIPTNVISI-DGQIFLETELFYKGIRPAINVGLSVSRVGSAAQT-----KAMKQVAGSLKLELAQYREVAAFAQF-G-S  300 (340)
T ss_pred             eecccceeee-cchhHHHHHHHHhccchhheeeeEeeeccchHHH-----HHHHHHhhhhhhHHHHHHHHHHHHHh-c-c
Confidence            4689999999 9999999999999999999999999999987544     37888889999999999999999998 4 5


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHH
Q psy5596          83 ALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLD  118 (154)
Q Consensus        83 ~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~  118 (154)
                      +|.......+.++.++ .+.|+|+.|.|...++.+.
T Consensus       301 dlda~tq~~l~rg~rl-tellkq~qy~p~~~e~qv~  335 (340)
T KOG1353|consen  301 DLDAATQQLLNRGVRL-TELLKQGQYAPLAIEEQVA  335 (340)
T ss_pred             cccHHHHHHHHhhhHH-HHHHhcCCCCCcchhhhee
Confidence            7878888899999999 9999999999998877653

>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.20  E-value=1e-10  Score=84.22  Aligned_cols=69  Identities=26%  Similarity=0.417  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHccHhHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCC-------C-HHHHHHHHHHHHh
Q psy5596          56 SDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENR-------T-VYESLDIGWQLLR  125 (154)
Q Consensus        56 ~~~a~~~~~~y~~~~eL~~ig~~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~-------~-~~~sl~~~~~ll~  125 (154)
                      ++++++++..|+++++|.++.+++|.++++++++.++.+|++|++ ||+|++|+++       . ..+++...+.++.
T Consensus         1 k~v~~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e-~LkQ~~~~~~~~~~q~~~~~~~~~~~~~~~~~   77 (113)
T PF00306_consen    1 KKVAGQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIRE-FLKQNAFDPVPLEKQYVMILEETIDLFYAILR   77 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHH-HT-BSTTTTTSSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HcCCCCCCCCcCcchhhhHHHHHHHHHHHHHh
Confidence            367889999999999999999999999999999999999999955 9999999999       4 4444444445544

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....

>COG1158 Rho Transcription termination factor [Transcription]

Probab=97.20  E-value=0.00054  Score=58.42  Aligned_cols=44  Identities=23%  Similarity=0.282  Sum_probs=36.1

Q ss_pred             cccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhcc
Q psy5596           5 IPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE   48 (154)
Q Consensus         5 I~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~   48 (154)
                      |-.+-.+.=..-++|||+||++++|||||+..|=.|=-..+.++
T Consensus       333 IfEEFKGTGNmEl~LdR~laerRifPAIdi~kSGTRKEeLLl~~  376 (422)
T COG1158         333 IFEEFKGTGNMELHLDRKLAERRIFPAIDINKSGTRKEELLLSP  376 (422)
T ss_pred             hhhhhcCCCceEEEEhhhhhhcccccceecccCCcchHhhcCCH
Confidence            33444555566899999999999999999999999988877664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	154
3ssa_A	460	Crystal Structure Of Subunit B Mutant N157t Of The		8e-45
3tiv_A	460	Crystal Structure Of Subunit B Mutant N157a Of The		9e-45
2c61_A	469	Crystal Structure Of The Non-Catalytic B Subunit Of		9e-45
3tgw_A	460	Crystal Structure Of Subunit B Mutant H156a Of The		9e-45
2rkw_A	469	Intermediate Position Of Atp On Its Trail To The Bi		3e-44
3gqb_B	464	Crystal Structure Of The A3b3 Complex From V-atpase		1e-41
3a5c_D	478	Inter-Subunit Interaction And Quaternary Rearrangem		1e-41
3vr6_D	465	Crystal Structure Of Amp-pnp Bound Enterococcus Hir		2e-39
3vr2_D	465	Crystal Structure Of Nucleotide-free A3b3 Complex F		3e-39
2xok_D	511	Refined Structure Of Yeast F1c10 Atpase Complex To		2e-04
4b2q_E	473	Model Of The Yeast F1fo-Atp Synthase Dimer Based On		2e-04
4b2q_D	470	Model Of The Yeast F1fo-Atp Synthase Dimer Based On		2e-04
3fks_D	484	Yeast F1 Atpase In The Absence Of Bound Nucleotides		2e-04
2hld_D	478	Crystal Structure Of Yeast Mitochondrial F1-Atpase		2e-04
3oeh_D	484	Structure Of Four Mutant Forms Of Yeast F1 Atpase:		2e-04

>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao Atp Synthase Length = 460

Iteration: 1
 Score =  175 bits (444), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 82/145 (56%), Positives = 106/145 (73%)
Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDL+GYITEGQI V R+LH + IYPPINVLPSLSRLM S IG   TR+DH  VS+
Sbjct: 310 ITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSD 369
Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           Q+YA YA G+D++ + A+VG+EAL+  D  +LEF   FE  FV QG  ENRT+ ++L+IG
Sbjct: 370 QMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIG 429
Query: 121 WQLLRIFPKEMLKRIPASTLAEFYP 145
           WQ+L   P+  L RI    + +++P
Sbjct: 430 WQILTHLPENQLGRIDNKYIQKYHP 454

>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao Atp Synthase Length = 460

Iteration: 1
 Score =  175 bits (444), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 82/145 (56%), Positives = 106/145 (73%)
Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDL+GYITEGQI V R+LH + IYPPINVLPSLSRLM S IG   TR+DH  VS+
Sbjct: 310 ITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSD 369
Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           Q+YA YA G+D++ + A+VG+EAL+  D  +LEF   FE  FV QG  ENRT+ ++L+IG
Sbjct: 370 QMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIG 429
Query: 121 WQLLRIFPKEMLKRIPASTLAEFYP 145
           WQ+L   P+  L RI    + +++P
Sbjct: 430 WQILTHLPENQLGRIDNKYIQKYHP 454

>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type Atpase From M. Mazei Go1 Length = 469

Iteration: 1
 Score =  175 bits (444), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 82/145 (56%), Positives = 106/145 (73%)
Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDL+GYITEGQI V R+LH + IYPPINVLPSLSRLM S IG   TR+DH  VS+
Sbjct: 319 ITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSD 378
Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           Q+YA YA G+D++ + A+VG+EAL+  D  +LEF   FE  FV QG  ENRT+ ++L+IG
Sbjct: 379 QMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIG 438
Query: 121 WQLLRIFPKEMLKRIPASTLAEFYP 145
           WQ+L   P+  L RI    + +++P
Sbjct: 439 WQILTHLPENQLGRIDNKYIQKYHP 463

>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao Atp Synthase Length = 460

Iteration: 1
 Score =  175 bits (443), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 82/145 (56%), Positives = 106/145 (73%)
Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDL+GYITEGQI V R+LH + IYPPINVLPSLSRLM S IG   TR+DH  VS+
Sbjct: 310 ITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSD 369
Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           Q+YA YA G+D++ + A+VG+EAL+  D  +LEF   FE  FV QG  ENRT+ ++L+IG
Sbjct: 370 QMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIG 429
Query: 121 WQLLRIFPKEMLKRIPASTLAEFYP 145
           WQ+L   P+  L RI    + +++P
Sbjct: 430 WQILTHLPENQLGRIDNKYIQKYHP 454

>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding Pocket Inside The Subunit B Mutant R416w Of The Energy Converter A1ao Atp Synthase Length = 469

Iteration: 1
 Score =  173 bits (439), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 82/145 (56%), Positives = 106/145 (73%)
Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDL+GYITEGQI V R+LH + IYPPINVLPSLSRLM S IG   TR+DH  VS+
Sbjct: 319 ITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSD 378
Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           Q+YA YA G+D++ + A+VG+EAL+  D  +LEF   FE  FV QG  ENRT+ ++L+IG
Sbjct: 379 QMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGWNENRTIEDTLEIG 438
Query: 121 WQLLRIFPKEMLKRIPASTLAEFYP 145
           WQ+L   P+  L RI    + +++P
Sbjct: 439 WQILTHLPENQLGRIDNKYIQKYHP 463

>pdb|3GQB|B Chain B, Crystal Structure Of The A3b3 Complex From V-atpase Length = 464

Iteration: 1
 Score =  165 bits (417), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 76/143 (53%), Positives = 105/143 (73%), Gaps = 1/143 (0%)
Query: 2   THPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQ 61
           THPIPDLTGYITEGQI + R+LH + IYPPI+ LPSLSRLM + +G+  TR+DH  VS+Q
Sbjct: 322 THPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGKTREDHKQVSDQ 381
Query: 62  LYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGW 121
           LY+ YA G D++ + A++GE+ALT +D  YL+F   FE+ F++QG  +NR++ ESL I W
Sbjct: 382 LYSAYANGVDIRKLVAIIGEDALTENDRRYLQFADAFERFFINQGQ-QNRSIEESLQIAW 440
Query: 122 QLLRIFPKEMLKRIPASTLAEFY 144
            LL + P+  LKRI    + ++Y
Sbjct: 441 ALLSMLPQGELKRISKDHIGKYY 463

>pdb|3A5C|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement Defined By The Central Stalk Of Prokaryotic V1-Atpase Length = 478

Iteration: 1
 Score =  164 bits (416), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 76/143 (53%), Positives = 105/143 (73%), Gaps = 1/143 (0%)
Query: 2   THPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQ 61
           THPIPDLTGYITEGQI + R+LH + IYPPI+ LPSLSRLM + +G+  TR+DH  VS+Q
Sbjct: 322 THPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGKTREDHKQVSDQ 381
Query: 62  LYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGW 121
           LY+ YA G D++ + A++GE+ALT +D  YL+F   FE+ F++QG  +NR++ ESL I W
Sbjct: 382 LYSAYANGVDIRKLVAIIGEDALTENDRRYLQFADAFERFFINQGQ-QNRSIEESLQIAW 440
Query: 122 QLLRIFPKEMLKRIPASTLAEFY 144
            LL + P+  LKRI    + ++Y
Sbjct: 441 ALLSMLPQGELKRISKDHIGKYY 463

>pdb|3VR6|D Chain D, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae V1-atpase [bv1] Length = 465

Iteration: 1
 Score =  157 bits (397), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 74/144 (51%), Positives = 98/144 (68%)
Query: 2   THPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQ 61
           THPIPDLTGYITEGQI + R+L+   I PPI+VLPSLSRL     G   TR+DH+   NQ
Sbjct: 319 THPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRLKDKGTGAGKTREDHAATMNQ 378
Query: 62  LYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGW 121
           L+A YA GK  + +  V+GE AL+  D +Y +F  +FE  +V+QG Y NRT+ E+LD+GW
Sbjct: 379 LFAAYAQGKQAKELAVVLGESALSDIDKIYAKFAERFENEYVNQGFYTNRTITETLDLGW 438
Query: 122 QLLRIFPKEMLKRIPASTLAEFYP 145
           +LL + P+  LKRI    L ++ P
Sbjct: 439 ELLAMLPRTELKRIKDDLLDKYLP 462

>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From Enterococcus Hirae V-atpase [ea3b3] Length = 465

Iteration: 1
 Score =  157 bits (396), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 74/144 (51%), Positives = 97/144 (67%)
Query: 2   THPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQ 61
           THPIPDLTGYITEGQI + R+L+   I PPI+VLPSLSRL     G   TR+DH+   NQ
Sbjct: 319 THPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRLKDKGTGAGKTREDHAATXNQ 378
Query: 62  LYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGW 121
           L+A YA GK  + +  V+GE AL+  D +Y +F  +FE  +V+QG Y NRT+ E+LD+GW
Sbjct: 379 LFAAYAQGKQAKELAVVLGESALSDIDKIYAKFAERFENEYVNQGFYTNRTITETLDLGW 438
Query: 122 QLLRIFPKEMLKRIPASTLAEFYP 145
           +LL   P+  LKRI    L ++ P
Sbjct: 439 ELLAXLPRTELKRIKDDLLDKYLP 462

>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A Resolution Length = 511

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           +T P P  T    +    + R +    IYP ++ L S SRL+ +A+      ++H DV++
Sbjct: 350 LTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAV----VGQEHYDVAS 405
Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
           ++       K +Q + A++G + L+  D L +E   K ++ F+SQ
Sbjct: 406 KVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQR-FLSQ 449

>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 473

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           +T P P  T    +    + R +    IYP ++ L S SRL+ +A+      ++H DV++
Sbjct: 312 LTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAV----VGQEHYDVAS 367
Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
           ++       K +Q + A++G + L+  D L +E   K ++ F+SQ
Sbjct: 368 KVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQR-FLSQ 411

>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 470

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           +T P P  T    +    + R +    IYP ++ L S SRL+ +A+      ++H DV++
Sbjct: 312 LTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAV----VGQEHYDVAS 367
Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
           ++       K +Q + A++G + L+  D L +E   K ++ F+SQ
Sbjct: 368 KVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQR-FLSQ 411

>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides Length = 484

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           +T P P  T    +    + R +    IYP ++ L S SRL+ +A+      ++H DV++
Sbjct: 323 LTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAV----VGQEHYDVAS 378
Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
           ++       K +Q + A++G + L+  D L +E   K ++ F+SQ
Sbjct: 379 KVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQR-FLSQ 422

>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase Length = 478

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           +T P P  T    +    + R +    IYP ++ L S SRL+ +A+      ++H DV++
Sbjct: 317 LTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAV----VGQEHYDVAS 372
Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
           ++       K +Q + A++G + L+  D L +E   K ++ F+SQ
Sbjct: 373 KVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQR-FLSQ 416

>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Beta-V279f Length = 484

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           +T P P  T    +    + R +    IYP ++ L S SRL+ +A+      ++H DV++
Sbjct: 323 LTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAV----VGQEHYDVAS 378
Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
           ++       K +Q + A++G + L+  D L +E   K ++ F+SQ
Sbjct: 379 KVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQR-FLSQ 422

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	154
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	1e-76
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	4e-71
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	4e-10
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	6e-09
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	3e-07
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A* Length = 469

 Score =  234 bits (599), Expect = 1e-76
 Identities = 82/149 (55%), Positives = 107/149 (71%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           ITHPIPDL+GYITEGQI V R+LH + IYPPINVLPSLSRLM S IG   TR+DH  VS+
Sbjct: 319 ITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSD 378

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           Q+YA YA G+D++ + A+VG+EAL+  D  +LEF   FE  FV QG  ENRT+ ++L+IG
Sbjct: 379 QMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIG 438

Query: 121 WQLLRIFPKEMLKRIPASTLAEFYPRDSR 149
           WQ+L   P+  L RI    + +++P   +
Sbjct: 439 WQILTHLPENQLGRIDNKYIQKYHPAHRK 467

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D* Length = 464

 Score =  219 bits (561), Expect = 4e-71
 Identities = 76/144 (52%), Positives = 105/144 (72%), Gaps = 1/144 (0%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
            THPIPDLTGYITEGQI + R+LH + IYPPI+ LPSLSRLM + +G+  TR+DH  VS+
Sbjct: 321 RTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGKTREDHKQVSD 380

Query: 61  QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIG 120
           QLY+ YA G D++ + A++GE+ALT +D  YL+F   FE+ F++QG  +NR++ ESL I 
Sbjct: 381 QLYSAYANGVDIRKLVAIIGEDALTENDRRYLQFADAFERFFINQG-QQNRSIEESLQIA 439

Query: 121 WQLLRIFPKEMLKRIPASTLAEFY 144
           W LL + P+  LKRI    + ++Y
Sbjct: 440 WALLSMLPQGELKRISKDHIGKYY 463

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} Length = 438

 Score = 55.8 bits (135), Expect = 4e-10
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 16/129 (12%)

Query: 4   PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN--- 60
           PI D    I +G I + R+L     YP I++  S+SR M + I E      H        
Sbjct: 320 PIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALITE-----QHYARVRLFK 374

Query: 61  QLYACYAIGKDVQAMKA-VVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDI 119
           QL + +   +D+ ++ A   G + +    +     L      F+ QG +E     +SL  
Sbjct: 375 QLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLWPQLE----AFLQQGIFERADWEDSLQ- 429

Query: 120 GWQLLRIFP 128
              L  IFP
Sbjct: 430 --ALDLIFP 436

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* Length = 347

 Score = 52.3 bits (126), Expect = 6e-09
 Identities = 23/128 (17%), Positives = 54/128 (42%), Gaps = 16/128 (12%)

Query: 4   PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN--- 60
           PI D    I +G I + R+L     +P I++  S SR+M      ++   +H   +    
Sbjct: 231 PIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMH-----NVVTSEHLRAAAECK 285

Query: 61  QLYACYAIGKDVQAMKA-VVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDI 119
           +L A Y   + +  +    +G++      +   + +    +NF+ Q   +  +  ++++ 
Sbjct: 286 KLIATYKNPELLIRIGEYTMGQDPEADKAIKNRKLI----QNFIQQSTKDISSYEKTIE- 340

Query: 120 GWQLLRIF 127
              L ++ 
Sbjct: 341 --SLFKVV 346

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A Length = 588

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 2/107 (1%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIG--EDMTRKDHSDV 58
            + P+   T  + +    +D  L  R+ +P IN L S S  + +           +   +
Sbjct: 399 FSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAM 458

Query: 59  SNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
            ++  A      ++Q +  +VG +AL   +   L       ++++ Q
Sbjct: 459 RDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQ 505

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C Length = 578

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 2/107 (1%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMK--SAIGEDMTRKDHSDV 58
           ++ P+   T  I      +D  L  R+ +P IN   S S           +   +D+ ++
Sbjct: 391 MSEPVTQSTLRIVGAFWRLDASLAFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPEL 450

Query: 59  SNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQ 105
            + +         +Q +  +VG +AL   + L +E      ++F+ Q
Sbjct: 451 RDAISELLQREAGLQEIVQLVGPDALQDAERLVIEVGRIIREDFLQQ 497

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 38/155 (24%)

Query: 4   PIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRL-----MKSAIGEDMTRKDHSDV 58
           P      YI       DR  ++ Q++   NV    SRL     ++ A+ E    +   +V
Sbjct: 105 PSMMTRMYIE----QRDRLYNDNQVFAKYNV----SRLQPYLKLRQALLEL---RPAKNV 153

Query: 59  SNQLYACYAIGKDVQAMKAV-----------------VGEEALTPDDLL--YLEFLTKFE 99
              +      GK   A+                    +     +P+ +L    + L + +
Sbjct: 154 L--IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETVLEMLQKLLYQID 210

Query: 100 KNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKR 134
            N+ S+ ++ +        I  +L R+   +  + 
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	154
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	100.0
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	100.0
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	100.0
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	99.97
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	99.97
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	99.97
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	99.96
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	99.96
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	99.96
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	99.96
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	99.96
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	99.96
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	99.96
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	99.96
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.86
3l0o_A	427	Transcription termination factor RHO; helicase, RH	99.79
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.78
3ice_A	422	Transcription termination factor RHO; transcriptio	99.78

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=100.00  E-value=4.4e-39  Score=278.13  Aligned_cols=147  Identities=50%  Similarity=0.870  Sum_probs=141.4

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      ++|||+|++++|+||||||||+||++||||||||+.|+||+|+.++++|++.++|.++++++++.|+++++|++++++.|
T Consensus       318 ~~~pI~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~~~ig~~~~~~~h~~~a~~l~~~~~~~~el~~i~~~~G  397 (465)
T 3vr4_D          318 KTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRLKDKGTGAGKTREDHAATMNQLFAAYAQGKQAKELAVVLG  397 (465)
T ss_dssp             TTSHHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGGGSCSTTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccchhHHHhhhcCeEEEEcHHHHhCCCCCCCCccccchhcchhhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            68999999999999999999999999999999999999999999999888889999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhhCCCC
Q psy5596          81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYPRD  147 (154)
Q Consensus        81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~~~~~  147 (154)
                      .++++++++.++.++++|++.||+|+.+++.++++++..+|.+|..+|.++++++++++|++|||+.
T Consensus       398 ~d~L~~~d~~~~~~~~~~~~~fL~Q~~~e~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~  464 (465)
T 3vr4_D          398 ESALSDIDKIYAKFAERFENEYVNQGFYTNRTITETLDLGWELLAMLPRTELKRIKDDLLDKYLPEG  464 (465)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHTTCCCTTCCCCHHHHHHHHHHHHTTSCTTTCTTSCHHHHHHHCC--
T ss_pred             CCCCCHHHHHHHHhhHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhccCC
Confidence            9999999999999999887899999999999999999999999999999999999999999999974

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=100.00  E-value=1.5e-38  Score=275.62  Aligned_cols=146  Identities=56%  Similarity=0.952  Sum_probs=141.3

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      ++|||+|++++|+||||||||+||++||||||||+.|+||+|+.++++||+.++|.++++++++.|+++++|+++++|.|
T Consensus       319 ~~dPI~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~~~~~ig~~~~~~~~~~~a~~l~~~l~~~~eL~~i~~~~G  398 (469)
T 2c61_A          319 ITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVG  398 (469)
T ss_dssp             TTSCCCCCGGGGTTEEEEBCHHHHHTTCSSCBCTTTCEETTGGGSCSTTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCcchHHHHhhccCcEEEEcHHHHhCCCCCccCccccccccchhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            68999999999999999999999999999999999999999999889999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhhCCC
Q psy5596          81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYPR  146 (154)
Q Consensus        81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~~~~  146 (154)
                      .++++|+++..+.+++.|.+.||+|+.++++++++++..+|.+|..++.+++++++++++++|||+
T Consensus       399 ~~~l~d~~~~~l~~~~~i~~~fL~Q~~~~~~~~~et~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  464 (469)
T 2c61_A          399 KEALSERDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIGWQILTHLPENQLGRIDNKYIQKYHPA  464 (469)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHTTCCCTTCCCCHHHHHHHHHHHHTTSCGGGCTTSCHHHHHHHSTT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999445999999999999999999999999999999999999999999985

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=100.00  E-value=2e-38  Score=273.96  Aligned_cols=144  Identities=53%  Similarity=0.943  Sum_probs=139.7

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      ++|||+|++++|+||||||||+||++||||||||+.|+||+|+.++++|++.++|.++++++++.|+++++|++++++.|
T Consensus       321 ~~~pi~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~~~ig~~~~~~~h~~~a~~l~~~~~~~~el~~i~~~~G  400 (464)
T 3gqb_B          321 RTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGKTREDHKQVSDQLYSAYANGVDIRKLVAIIG  400 (464)
T ss_dssp             TTSHHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGGGTSSTTTSCTTHHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred             ccCchhHHHhhhcCeEEEEcHHHHhCCCCCCcCcccchhhcchhhcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            68999999999999999999999999999999999999999999999899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhhCC
Q psy5596          81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEFYP  145 (154)
Q Consensus        81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~~~  145 (154)
                      .++++++++.++.++++|++.||+|+ +++.+++++++.+|++|+.+|++++++|++++|++||.
T Consensus       401 ~d~L~~~d~~~~~~~~~~~~~fL~Q~-~e~~~~~~s~~~l~~ll~~~p~~~~~~~~~~~~~~~~~  464 (464)
T 3gqb_B          401 EDALTENDRRYLQFADAFERFFINQG-QQNRSIEESLQIAWALLSMLPQGELKRISKDHIGKYYG  464 (464)
T ss_dssp             SCCCCSHHHHTTHHHHHHHHTTTCCT-TCCCCHHHHHHHHHHHHTTSCGGGCTTSCHHHHHHHCC
T ss_pred             CCCCCHHHHHHHHhhHHHHHHhcCCC-CCCCCHHHHHHHHHHHHHhCCHHHHhcCCHHHHHHhcC
Confidence            99999999999999998867999999 99999999999999999999999999999999999995

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=99.97  E-value=3.2e-32  Score=239.51  Aligned_cols=126  Identities=17%  Similarity=0.273  Sum_probs=117.8

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhcccc---CcHHHHHHHHHHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDM---TRKDHSDVSNQLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~---~~~~~~~~a~~~~~~y~~~~eL~~ig~   77 (154)
                      ++|||+++|++|+||||+|||+||++||||||||+.|+||+|+.+ ++||   +.++|.+++++++++|+++++++++.+
T Consensus       399 ~sdpi~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~i-~~~~~~~~~~~h~~~a~~~~~~La~~~el~~ii~  477 (588)
T 3mfy_A          399 FSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAV-KDWWHKNIDPEWKAMRDKAMALLQKESELQEIVR  477 (588)
T ss_dssp             SSCSHHHHHHHHCSEECCBCHHHHHTTCSSCBCTTTCEETTHHHH-HHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHhccCeeecCHHHHhCCCCCCcCcccchhhhcccc-cchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999984 4455   356999999999999999999999999


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhC
Q psy5596          78 VVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIF  127 (154)
Q Consensus        78 ~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~  127 (154)
                      ++|.|+|+++++.++.++++|++.||+|++|+++|.+|++++++.+|+.+
T Consensus       478 i~G~d~Ls~~dk~~l~~ar~i~e~fL~Q~~f~~~d~~~~~~k~~~~l~~i  527 (588)
T 3mfy_A          478 IVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVL  527 (588)
T ss_dssp             HHCSTTCCHHHHHHHHHHHHHHHHTTCCCTTSTTTTCCCHHHHHHHHHHH
T ss_pred             hcCCccCCHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHHH
Confidence            99999999999999999999977999999999999999999999888754

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=99.97  E-value=2.5e-31  Score=234.55  Aligned_cols=141  Identities=21%  Similarity=0.332  Sum_probs=124.0

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccC---cHHHHHHHHHHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMT---RKDHSDVSNQLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~---~~~~~~~a~~~~~~y~~~~eL~~ig~   77 (154)
                      ++|||+++|++|+||||+|||+||++||||||||+.|+||+|+.+ .+||+   .++|.+++++++++|+++++++++.+
T Consensus       404 ~tdPi~~~t~~i~dg~ivLsr~La~~giyPAId~l~S~SR~~~~l-~~~~~~~~~~~h~~~a~~~~~~la~~~el~~ii~  482 (600)
T 3vr4_A          404 ISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSINWIQSYSLYSTEV-GRYMDQILQQDWSDMVTEGMRILQEEEQLNEIVR  482 (600)
T ss_dssp             TTSHHHHHHHTTCCEECCBCHHHHTTTCSSCBCTTTCEETTHHHH-HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchhhhhhhccEEEEEhhhHHhCCCCCccCcccchhhhcccc-cccccccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            689999999999999999999999999999999999999999874 35543   36999999999999999999999999


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhC---ChH---hh-cCCChhHHHh
Q psy5596          78 VVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIF---PKE---ML-KRIPASTLAE  142 (154)
Q Consensus        78 ~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~---~~~---~~-~~i~~~~i~~  142 (154)
                      ++|.|+|+++++.++.++++|++.||+|++|+++|.+|++++++.+|+.+   ...   .+ .++|-+.|..
T Consensus       483 i~G~d~Ls~~dk~~l~~a~~i~e~fL~Q~~f~~~d~~~~~~kq~~~l~~i~~~~~~~~~~~~~~~~~~~i~~  554 (600)
T 3vr4_A          483 LVGIDSLSDNDRLTLEVAKSIREDYLQQNAFDDVDTFTSREKQFNMLKVILTFGKEARKALSLGAYFNEIME  554 (600)
T ss_dssp             HTCGGGSCHHHHHHHHHHHHHHHHTTCCCTTSTTTTCCCHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             ccCCccCCHHHHHHHHHHHHHHHHhCCCCCcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            99999999999999999999977899999999999999999999888744   111   21 3666666655

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C

Probab=99.97  E-value=6.7e-32  Score=237.33  Aligned_cols=126  Identities=19%  Similarity=0.301  Sum_probs=116.9

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhcccc---CcHHHHHHHHHHHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDM---TRKDHSDVSNQLYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~---~~~~~~~~a~~~~~~y~~~~eL~~ig~   77 (154)
                      ++|||+++|++|+||||||||+||++||||||||+.|+||+|+.+ ++||   +.++|.+++++++++|+++++++++.+
T Consensus       391 ~tdPi~~~t~~i~dg~ivLsr~La~~g~yPAId~l~S~SR~~~~v-~~~~~~~~~~~h~~~a~~~~~~l~~~~el~~ii~  469 (578)
T 3gqb_A          391 MSEPVTQSTLRIVGAFWRLDASLAFRRHFPAINWNGSYSLFTSAL-DPWYRENVAEDYPELRDAISELLQREAGLQEIVQ  469 (578)
T ss_dssp             TTSHHHHHHHTTCSEECCBCHHHHHHTCSSCBCTTTCEESSHHHH-HHHHHHHTCTTHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred             CCCcchHHHhhhcCceEEECHHHHhCCCCCCcCcccchhhccccc-cccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999874 3554   346999999999999999999999999


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhC
Q psy5596          78 VVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIF  127 (154)
Q Consensus        78 ~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~  127 (154)
                      ++|.|+|+++++.++.++++|++.||+|++|+++|.+|++++++.+|+.+
T Consensus       470 i~G~d~Ls~~dk~~l~~a~~i~~~fL~Q~~f~~~d~~~~~~kq~~~l~~i  519 (578)
T 3gqb_A          470 LVGPDALQDAERLVIEVGRIIREDFLQQNAYHEVDAYSSMKKAYGIMKMI  519 (578)
T ss_dssp             TTTGGGCCHHHHHHHHHHHHHHHHHTCCCSSSTTTTCCCHHHHHHHHHHH
T ss_pred             hcCCccCCHHHHHHHHHHHHHHHHhCCCCCCCCceecCCHHHHHHHHHHH
Confidence            99999999999999999999977899999999999999999999888744

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=99.96  E-value=3.4e-30  Score=223.63  Aligned_cols=128  Identities=25%  Similarity=0.341  Sum_probs=117.7

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHH-HHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLM-KSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVV   79 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~-~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~   79 (154)
                      ++|||||++++||||||||||+||++||||||||+.|+||+| +.+++     ++|.+++++++..|+++++++++.+..
T Consensus       321 ~tdPi~d~~~~i~dG~ivLsr~La~~giyPAIDvl~S~SR~~~~~i~~-----~~~~~~a~~lr~~la~y~el~~li~i~  395 (482)
T 2ck3_D          321 LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVG-----SEHYDVARGVQKILQDYKSLQDIIAIL  395 (482)
T ss_dssp             TTSHHHHHHGGGCSEEEEBCHHHHTTTCSSCBCTTSCEETTCSHHHHC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHhcCeEEEEcHHHHhCCCCCccCcccccccCCCcccCC-----HHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence            589999999999999999999999999999999999999999 56766     499999999999999999999999988


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCC----------CCCCHHHHHHHHHHHHhhCChHhhcCCChh
Q psy5596          80 GEEALTPDDLLYLEFLTKFEKNFVSQGNY----------ENRTVYESLDIGWQLLRIFPKEMLKRIPAS  138 (154)
Q Consensus        80 G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~----------~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~  138 (154)
                      |.+++++++...+.++++| +.||+|+++          +.+++++++..+..++.    ++.+.+|++
T Consensus       396 G~~~l~~~d~~~l~~~~~i-~~fL~Q~~~v~~~f~~~~g~~~~~~~t~~~l~~il~----g~~d~~pe~  459 (482)
T 2ck3_D          396 GMDELSEEDKLTVSRARKI-QRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILA----GEYDHLPEQ  459 (482)
T ss_dssp             CGGGSCHHHHHHHHHHHHH-HHHTCCCCGGGHHHHSSCCCCCCHHHHHHHHHHHHT----TTTTTSCGG
T ss_pred             CCCcCCHHHHHHHHHHHHH-HHHHcCCchHHHHhhcCccccCCHHHHHHHHHHHhc----ccccCCCHH
Confidence            9999999999999999999 889999976          88999999998888875    567788874

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=99.96  E-value=1.2e-30  Score=227.23  Aligned_cols=128  Identities=23%  Similarity=0.365  Sum_probs=115.5

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHH-HhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMK-SAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVV   79 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~-~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~   79 (154)
                      +||||||++++||||||||||+||++||||||||+.|+||+|+ .+++     ++|++++++++..|+++++++++.++.
T Consensus       334 ~tdPi~d~~~~ilDG~ivLsR~La~~giyPAID~l~S~SR~~~~~i~~-----~~h~~~a~~lr~~la~y~el~~li~i~  408 (498)
T 1fx0_B          334 LTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVG-----EEHYEIAQRVKETLQRYKELQDIIAIL  408 (498)
T ss_dssp             SSSHHHHHHHTTCSEEEEBCSTTTTTTCSSCBCSSSCCBTTCSTTTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcchHHHHHhhCceEEehhhHHhCCCCceeccccccccCCCcccCC-----HHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            5899999999999999999999999999999999999999984 4554     599999999999999999999999988


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCC----------CCCCHHHHHHHHHHHHhhCChHhhcCCChh
Q psy5596          80 GEEALTPDDLLYLEFLTKFEKNFVSQGNY----------ENRTVYESLDIGWQLLRIFPKEMLKRIPAS  138 (154)
Q Consensus        80 G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~----------~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~  138 (154)
                      |.++++++++..+.++++| +.||+|+++          +.+++++++..+..++    .++.+.+|++
T Consensus       409 G~d~ls~~d~~~l~~~~~i-~~fL~Q~~~v~e~ft~~~g~~v~~~~t~~~l~~il----~g~~d~~pe~  472 (498)
T 1fx0_B          409 GLDELSEEDRLTVARARKI-ERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLIL----SGELDSLPEQ  472 (498)
T ss_dssp             CSTTSCTTTHHHHHHHHHH-HHHTCCCCSSCTTTSCSCCCCCCHHHHHHHHHTTT----TTTTSSSCGG
T ss_pred             CCCcCCHHHHHHHHHHHHH-HHHHcCCchHHHHhhcCCCcccCHHHHHHHHHHHh----cCcccCCCHH
Confidence            9999999999999999999 889999977          7788999988666554    3678888885

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=99.96  E-value=3.6e-30  Score=224.69  Aligned_cols=131  Identities=24%  Similarity=0.266  Sum_probs=121.6

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      ++|||+|++++|+||||||||+||++||||||||+.|+||+|+.++.     ++|.+++++++..|++++++.++.++ |
T Consensus       339 ~s~pI~~~~~si~DGqI~Lsr~La~~g~yPAIdvl~SvSRv~~~~~~-----~~~~~~a~~lr~~la~y~el~~~~~~-G  412 (515)
T 2r9v_A          339 ISAYIPTNVISITDGQIYLEPGLFYAGQRPAINVGLSVSRVGGSAQI-----KAMKQVAGMLRIDLAQYRELETFAQF-A  412 (515)
T ss_dssp             TTSHHHHHHHHTSSEEEEBCHHHHHHTCSSCBCTTTCEEGGGTTTSC-----HHHHHHHHHHHHHHHHHHHHHTTGGG-C
T ss_pred             ccccchhhhccccceEEEEchHHHhCCCCCeeccccccccCCcccCC-----HHHHHHHHHHHHHHhhhhHHHHHHHh-c
Confidence            58999999999999999999999999999999999999999998766     59999999999999999999999886 7


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhh
Q psy5596          81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEF  143 (154)
Q Consensus        81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~  143 (154)
                       +++++++...+.+++.| +.||+|+.++++++++++..+|.+    .++.++++|.+.|.+|
T Consensus       413 -~~l~~~~~~~l~~~~~i-~~fL~Q~~~~~~~~~e~~~~l~~~----~~g~ld~i~~~~i~~~  469 (515)
T 2r9v_A          413 -TELDPATRAQIIRGQRL-MELLKQEQYSPMPVEEQVVVLFAG----VRGYLDDLPVEEVRRF  469 (515)
T ss_dssp             -SCCCHHHHHHHHHHHHH-HHHTCCCTTCCCCHHHHHHHHHHH----HTTTTTTSCGGGHHHH
T ss_pred             -cCCCHHHHHHHHHHHHH-HHHhcCCCCCCCCHHHHHHHHHHH----HhhhhccccHHHHHHH
Confidence             67999999999999999 779999999999999999988876    4567899999888887

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=99.96  E-value=7.2e-30  Score=221.50  Aligned_cols=128  Identities=23%  Similarity=0.336  Sum_probs=116.6

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHH-HHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLM-KSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVV   79 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~-~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~   79 (154)
                      ++|||||++++||||||||||+||++||||||||+.|+||+| +.+++     ++|.+++++++..|+++++++++.+..
T Consensus       313 ~~dpi~~~~~~i~dg~ivLsr~La~~g~yPAId~l~S~SR~~~~~~~~-----~~~~~~a~~lr~~la~y~e~~~li~i~  387 (473)
T 1sky_E          313 YTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRALAPEIVG-----EEHYQVARKVQQTLERYKELQDIIAIL  387 (473)
T ss_dssp             SSSHHHHHHHTTCSEEEEBCTTHHHHTCSSCBCTTTCCBTTCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHhhcCceEEecHHHHhCCCCCccccccccccccchhcCC-----HHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence            589999999999999999999999999999999999999999 45665     499999999999999999999999988


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCC----------CCCCHHHHHHHHHHHHhhCChHhhcCCChh
Q psy5596          80 GEEALTPDDLLYLEFLTKFEKNFVSQGNY----------ENRTVYESLDIGWQLLRIFPKEMLKRIPAS  138 (154)
Q Consensus        80 G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~----------~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~  138 (154)
                      |.+++++++...+.+++.| +.||+|+.+          +.++++++++.++.++.    ++++++|++
T Consensus       388 g~~~ls~~d~~~l~~~~~i-~~fL~Q~~~~~~~~~~~~~~~~~~~~t~~~l~~i~~----~~~~~~~~~  451 (473)
T 1sky_E          388 GMDELSDEDKLVVHRARRI-QFFLSQNFHVAEQFTGQPGSYVPVKETVRGFKEILE----GKYDHLPED  451 (473)
T ss_dssp             CSTTCTTHHHHHHHHHHHH-HHHTCBCCTTTHHHHSCCCCCCCHHHHHHHHHHHHT----TTTTTSCGG
T ss_pred             CcccCCHHHHHHHHHHHHH-HHHHcCCchHhhhhhccCCccCCHHHHHHHHHHHhc----ccccCCCHH
Confidence            9899999999999999999 789999976          56899999998887764    678888884

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=99.96  E-value=3.8e-30  Score=224.58  Aligned_cols=131  Identities=24%  Similarity=0.343  Sum_probs=121.4

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      ++||||+++++|+||||||||+||++||||||||+.|+||+|+.++.     ++|++++++++..|++++++.++.++ |
T Consensus       334 ~s~pI~~~~~si~DgqI~Lsr~La~~gi~PAIdvl~SvSRv~~~~~~-----~~~~~~a~~lr~~la~y~el~~~~~~-G  407 (510)
T 2ck3_A          334 VSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQT-----RAMKQVAGTMKLELAQYREVAAFAQF-G  407 (510)
T ss_dssp             TTSHHHHHHHHHSSEEEEBCHHHHHHTCSSCBCTTTCEESSGGGGSC-----HHHHHHHHHHHHHHHHHHHHGGGSSS-C
T ss_pred             ccccchHhhhcccceEEEEehhHhhCCCCCcccchhcccccccccCC-----HHHHHHHHHHHHHHHhhhHHHHHHHh-c
Confidence            58999999999999999999999999999999999999999999866     59999999999999999999999876 7


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhh
Q psy5596          81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEF  143 (154)
Q Consensus        81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~  143 (154)
                       +++++++...+.+++.| +.||+|+.++++++++++..+|.+    .++.++++|.+.|.+|
T Consensus       408 -~~l~~~~~~~l~~~~~i-~~fL~Q~~~~~~~~~~~~~~l~~~----~~g~l~~i~~~~i~~~  464 (510)
T 2ck3_A          408 -SDLDAATQQLLSRGVRL-TELLKQGQYSPMAIEEQVAVIYAG----VRGYLDKLEPSKITKF  464 (510)
T ss_dssp             -SSSCHHHHHHHHHHHHH-HHTTCCCSSCCCCHHHHHHHHHHH----HTTSSTTSCGGGHHHH
T ss_pred             -CCCCHHHHHHHHHhHHH-HHHhcCCCCCCCCHHHHHHHHHHH----HhhhhcCCCHHHHHHH
Confidence             57999999999999999 779999999999999999988877    4567889999888887

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=99.96  E-value=5.4e-30  Score=223.48  Aligned_cols=131  Identities=23%  Similarity=0.223  Sum_probs=121.4

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      ++|||+|++++|+||||||||+||++||||||||+.|+||+|+.++.     ++|++++++++..|++++++.++.++ |
T Consensus       327 ~s~pI~~~~~si~DgqIvLsr~La~~g~yPAIdvl~S~SR~~~~~~~-----~~~~~~a~~lr~~la~y~el~~~~~~-G  400 (507)
T 1fx0_A          327 VSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQI-----KAMKKVAGKLKLELAQFAELEAFAQF-A  400 (507)
T ss_dssp             TTSHHHHHHHTTSSCBCCCCSSSSSSSCSSCCCTTTCCCTTGGGGSC-----HHHHHHHHHHHHHHHHHHHHTTTGGG-C
T ss_pred             cccchHHHHHhhcCcEEEEehhHhhCCCCCccchhhhhccccccCCC-----HHHHHHHHHHHHHHHhhhHHHHHHHh-c
Confidence            58999999999999999999999999999999999999999999766     59999999999999999999999886 7


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhh
Q psy5596          81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEF  143 (154)
Q Consensus        81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~  143 (154)
                       +++++++...+.++++| +.||+|+.++++++++++..+|.+    .++.++++|.+.|.+|
T Consensus       401 -~~l~~~~~~~l~~~~~i-~~fL~Q~~~~~~~~~e~~~~l~~~----~~g~l~~i~~~~i~~~  457 (507)
T 1fx0_A          401 -SDLDKATQNQLARGQRL-RELLKQPQSAPLTVEEQVMTIYTG----TNGYLDSLELDQVRKY  457 (507)
T ss_dssp             -SSCCHHHHHHHHHHHHH-HHHHCCCTTCCCCHHHHHHHHHHH----HTTSSSSSCHHHHHHH
T ss_pred             -cCCCHHHHHHHHHHHHH-HHHHCCCCCCCCCHHHHHHHHHHH----hhchhcCCCHHHHHHH
Confidence             67999999999999999 779999999999999999988876    4567889999888887

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=99.96  E-value=2.9e-30  Score=225.00  Aligned_cols=131  Identities=23%  Similarity=0.259  Sum_probs=120.3

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      ++|||+|++++|+||||||||+||++||||||||+.|+||+|+.++.     ++|.+++++++..|+++++++++.++ |
T Consensus       326 ~s~pI~~~~~si~DgqI~Lsr~La~~g~~PAIdvl~S~SRv~~~~~~-----~~~~~~a~~lr~~la~y~el~~~~~~-G  399 (502)
T 2qe7_A          326 VSAYIPTNVISITDGQIFLESDLFYSGVRPAVNVGISVSRVGGAAQI-----KAMKKVAGTLRLDLAQYRELQAFAQF-G  399 (502)
T ss_dssp             CSSHHHHHHHTTSSEEEEECHHHHTTTCSSCBCTTTCEESSGGGGSC-----HHHHHHHHHHHHHHHHHHHGGGSTTC-C
T ss_pred             cccchhHHHhhhcCcEEEEehhHhhCCCCceeCcccccccCCCccCC-----HHHHHHHHHHHHHHhhhHHHHHHHHh-c
Confidence            68999999999999999999999999999999999999999999766     59999999999999999999999776 7


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhh
Q psy5596          81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEF  143 (154)
Q Consensus        81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~  143 (154)
                       +++++++...+.++++| +.||+|+.++++++++++..+|.+    .++.++++|.+.|.+|
T Consensus       400 -~~l~~~~~~~l~~~~~i-~~fL~Q~~~~~~~~~~~~~~l~~~----~~g~l~~i~~~~i~~~  456 (502)
T 2qe7_A          400 -SDLDKATQAKLNRGERT-VEILKQDEHKPMPVEEQVISIYAV----TNGFMDDIPVEDVRRF  456 (502)
T ss_dssp             -CCTTTTTTTTHHHHHHH-HHHHCCCTTCCCCHHHHHHHHHHH----HTTTTTSSCSTTHHHH
T ss_pred             -cCCCHHHHHHHHHHHHH-HHHhCCCCCCCCCHHHHHHHHHHH----HhhhhcCCCHHHHHHH
Confidence             56888888899999999 779999999999999999988877    4567889998888887

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=99.96  E-value=1.8e-29  Score=219.92  Aligned_cols=131  Identities=21%  Similarity=0.255  Sum_probs=118.7

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      ++|||||++++|+||||||||+||++||||||||+.|+||+|+.++.     ++|++++.+++..|+++++++++.++ |
T Consensus       337 ~s~pIp~~~~si~DGqIvLsr~La~~giyPAIdvl~SvSRv~~~~~~-----~~~~~va~~lr~~la~y~el~~~~~~-g  410 (513)
T 3oaa_A          337 VSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAAQT-----KIMKKLSGGIRTALAQYRELAAFSQF-A  410 (513)
T ss_dssp             CSSHHHHHHHHHSSEEEEECHHHHTTSCCSCBCTTTCEESSGGGGSC-----HHHHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred             ccCcchHhhhccCCeEEEEehhHHhCCCCCccCccccccccCccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHh-h
Confidence            68999999999999999999999999999999999999999998766     49999999999999999999999998 6


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhcCCChhHHHhh
Q psy5596          81 EEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLKRIPASTLAEF  143 (154)
Q Consensus        81 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~~i~~~~i~~~  143 (154)
                       +++++++...+.++++| +.||+|+.++++++++++..++.+.    ++.++.+|.+.+.+|
T Consensus       411 -~~ld~~~~~~l~~~~~i-~~fL~Q~~~~~~~~~e~~~~l~a~~----~g~ld~~~~~~~~~~  467 (513)
T 3oaa_A          411 -SDLDDATRKQLDHGQKV-TELLKQKQYAPMSVAQQSLVLFAAE----RGYLADVELSKIGSF  467 (513)
T ss_dssp             -CSCCHHHHHHHHHHHHH-HHHTCCCSSCCCCTTHHHHHHHHHH----SCTTTTTCCHHHHHH
T ss_pred             -ccCCHHHHHHHHHHHHH-HHHhCCCCCCCCCHHHHHHHHHHHh----cCCCccCCHHHHHHH
Confidence             57999999999999999 8899999999999999998777664    456777777766665

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.86  E-value=3.4e-22  Score=167.32  Aligned_cols=118  Identities=17%  Similarity=0.243  Sum_probs=102.3

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      +++||+|++..+.||+|+|++.+++.|+||||||+.|+||+++.+++     ++|.+++.+++..|++++++.++.++.|
T Consensus       228 l~~~i~d~v~~i~dG~Ivl~~~l~~~~~~Paid~~~S~sr~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~  302 (347)
T 2obl_A          228 VNDPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVT-----SEHLRAAAECKKLIATYKNPELLIRIGE  302 (347)
T ss_dssp             CCCHHHHHHHHHCSEEEEBCHHHHTTTCSSCBCGGGCEETTHHHHSC-----HHHHHHHHHHHHHHHHCCCTHHHHTTTC
T ss_pred             CCChhhhheEEeeCcEEEEeCCHHHcCCCCCcCccccccccccccCC-----HHHHHHHHHHHHHHHccHHHHHHHHhcC
Confidence            46899999999999999999999999999999999999999999876     4999999888777777777777777655


Q ss_pred             CCCCCHHH-HHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy5596          81 EEALTPDD-LLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLL  124 (154)
Q Consensus        81 ~d~l~d~~-~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll  124 (154)
                      .+..+|++ ...+.+++.| ++||+|+.++++++++++..+|.++
T Consensus       303 ~~~~~~~~~~~~~~~~~~~-~~fl~Q~~~~~~~~~~~~~~~~~~~  346 (347)
T 2obl_A          303 YTMGQDPEADKAIKNRKLI-QNFIQQSTKDISSYEKTIESLFKVV  346 (347)
T ss_dssp             CCCCSCHHHHHHHHTHHHH-HHHHCCCTTCCCCHHHHHHHHHHHT
T ss_pred             CcCCCCHHHHHHHHHHHHH-HHHhCCCCCCCCCHHHHHHHHHHHh
Confidence            44555554 6778889998 8899999999999999999988874

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=99.79  E-value=2e-20  Score=159.46  Aligned_cols=76  Identities=18%  Similarity=0.213  Sum_probs=71.1

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      |+|||+|++++|+||||||||+||++||||||||+.|.||+|+.++++     +|.+++.+++..|+.++++..+.++.|
T Consensus       331 ~~dpI~d~~~~i~dg~IvLsR~La~~giyPAIDvl~S~SR~~~~l~~~-----~h~~~a~~lr~~la~y~e~e~l~~ll~  405 (427)
T 3l0o_A          331 MDEVIFEEFKGTGNMELVLSRQLANKRIFPAINLLLSGTRREELLLDE-----ETLKKVWLLRRMLSAMTEEEGLTLILN  405 (427)
T ss_dssp             HHHHHHHHTTTCCSEEEEBCHHHHTTTCSSCBCSTTCEETTGGGTSCH-----HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             cCCcchHHhcccCCceEEEeHHHHhCCCCCccCccccccccccccCCH-----HHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999884     999999999999999999999988875


Q ss_pred             C
Q psy5596          81 E   81 (154)
Q Consensus        81 ~   81 (154)
                      .
T Consensus       406 ~  406 (427)
T 3l0o_A          406 K  406 (427)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.78  E-value=6e-20  Score=157.89  Aligned_cols=118  Identities=20%  Similarity=0.241  Sum_probs=97.7

Q ss_pred             CCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhcC
Q psy5596           2 THPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGE   81 (154)
Q Consensus         2 tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G~   81 (154)
                      ++|++|++..+.||+|++++.+++.++||||||+.|+||++..+++     ++|.+++++++..|++++++.++.++.|.
T Consensus       318 ~~~iad~v~~l~dG~Ivl~~~~~~~~~~Paidv~~s~sR~~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  392 (438)
T 2dpy_A          318 QDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIT-----EQHYARVRLFKQLLSSFQRNRDLVSVGAY  392 (438)
T ss_dssp             CCHHHHHHHHHSSEEEEECHHHHHTTCSSCEEEEEEEETTHHHHSC-----HHHHHHHHHHHHHHHHHHHGGGTSSSSCC
T ss_pred             cchhhceEEEEeCcEEEEeCCHHHccCCCCcCCcccccccccccCC-----HHHHHHHHHHHHHHHhhHHHHHHHHhcCC
Confidence            5789999999999999999999999999999999999999988766     59999998776666666666666555443


Q ss_pred             CCCCHHH-HHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHh
Q psy5596          82 EALTPDD-LLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLR  125 (154)
Q Consensus        82 d~l~d~~-~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~  125 (154)
                      +..+|++ ...+.+++.| ++||+|+.++++++++++..++.+++
T Consensus       393 ~~~~d~~~~~~i~~~~~~-~~fl~Q~~~~~~~~~~~~~~~~~~~~  436 (438)
T 2dpy_A          393 AKGSDPMLDKAITLWPQL-EAFLQQGIFERADWEDSLQALDLIFP  436 (438)
T ss_dssp             CTTSCHHHHHHHTTHHHH-HHHHCCCTTCCCCHHHHHHHHHHHSC
T ss_pred             cCCCCHHHHHHHHHHHHH-HHHcCCCCCCCCCHHHHHHHHHHHHh
Confidence            3344433 4567778888 88999999999999999999998864

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=99.78  E-value=2.9e-20  Score=158.44  Aligned_cols=78  Identities=13%  Similarity=0.118  Sum_probs=72.8

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhc
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVG   80 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G   80 (154)
                      |+|||+|++++|+||||||||+||++||||||||+.|.||+|+.++++     +|.+++.+++..|+.+++++.+.++.|
T Consensus       330 ~~dpI~d~~~~i~dg~ivLsR~La~~giyPAIDvl~S~SR~~~~~~~~-----~~~~~a~~lr~~la~~~e~~~~~~ll~  404 (422)
T 3ice_A          330 MDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQ-----EELQKMWILRKIIHPMGEIDAMEFLIN  404 (422)
T ss_dssp             HHHHHHHHHHHHCSEEEEBCHHHHHTTCSSCBCTTTCEESSGGGSSCH-----HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             ccchHHHHhcccCCceEEEcHHHHhcCCCCccCccccccccchhhCCH-----HHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            468999999999999999999999999999999999999999998874     999999999999999999999999886


Q ss_pred             CCC
Q psy5596          81 EEA   83 (154)
Q Consensus        81 ~d~   83 (154)
                      .-.
T Consensus       405 ~~~  407 (422)
T 3ice_A          405 KLA  407 (422)
T ss_dssp             TTT
T ss_pred             Hhh
Confidence            443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	154
d1fx0a3	276	c.37.1.11 (A:97-372) Central domain of alpha subun	6e-18
d2jdia3	285	c.37.1.11 (A:95-379) Central domain of alpha subun	1e-17
d2jdid3	276	c.37.1.11 (D:82-357) Central domain of beta subuni	4e-15
d1xpua3	289	c.37.1.11 (A:129-417) Transcription termination fa	2e-10

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

 Score = 75.7 bits (186), Expect = 6e-18
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
           ++  IP     IT+GQI++   L N  I P INV  S+SR+  +A
Sbjct: 231 VSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAA 275

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} Length = 285

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.2 bits (185), Expect = 1e-17
 Identities = 17/45 (37%), Positives = 28/45 (62%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 45
           ++  IP     IT+GQI+++ +L  + I P INV  S+SR+  +A
Sbjct: 240 VSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 284

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.8 bits (166), Expect = 4e-15
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRL 41
           +T P P  T    +    + R +    IYP ++ L S SR+
Sbjct: 236 LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 276

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} Length = 289

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

 Score = 55.0 bits (132), Expect = 2e-10
 Identities = 11/79 (13%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 1   ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSN 60
           +   I +        ++++ R++  ++++P I+   S +R       E +T ++      
Sbjct: 199 MDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKE-----ELLTTQEELQKMW 253

Query: 61  QLYACYAIGKDVQAMKAVV 79
            L        ++ AM+ ++
Sbjct: 254 ILRKIIHPMGEIDAMEFLI 272

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	154
d1xpua3	289	Transcription termination factor Rho, ATPase domai	99.76
d2jdid1	118	F1 ATP synthase beta subunit, domain 3 {Rat (Rattu	99.4
d1skye1	114	F1 ATP synthase beta subunit, domain 3 {Bacillus s	99.4
d1fx0b1	108	F1 ATP synthase beta subunit, domain 3 {Spinach (S	99.37
d1skyb1	131	F1 ATP synthase alpha subunit, domain 3 {Bacillus	98.38
d1fx0a1	129	F1 ATP synthase alpha subunit, domain 3 {Spinach (	98.38
d2jdia1	131	F1 ATP synthase alpha subunit, domain 3 {Cow (Bos	98.31

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=3.8e-20  Score=149.94  Aligned_cols=81  Identities=7%  Similarity=0.028  Sum_probs=64.7

Q ss_pred             CCCCcccccccccccEEEechhhhhCCCCCCCcCCCChhHHHHHhhccccCcHHHHHHHHH---HHHHHHccHhHHHHHh
Q psy5596           1 ITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEDMTRKDHSDVSNQ---LYACYAIGKDVQAMKA   77 (154)
Q Consensus         1 ~tdPI~d~~~~ilDGhivLsr~LA~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~~~a~~---~~~~y~~~~eL~~ig~   77 (154)
                      ++|||+|++++|+||||||||+||++||||||||+.|+||+++.++++     +|.+.+..   +++.|.+++++..+..
T Consensus       199 ~~~pI~~~~~~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~l~~~-----~~~~~~~~lRr~l~~~~~~~~~e~Li~  273 (289)
T d1xpua3         199 MDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQ-----EELQKMWILRKIIHPMGEIDAMEFLIN  273 (289)
T ss_dssp             HHHHHHHHHTTTSSEEEEBCHHHHTTTCSSCBCTTTCEESCGGGGSCH-----HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             cCchHHHHHhcccCeEEEEchhHHhCCCCCCCccCCcccccchhhCCH-----HHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            368999999999999999999999999999999999999999998774     78887754   4444455555666666


Q ss_pred             hhcCCCCCH
Q psy5596          78 VVGEEALTP   86 (154)
Q Consensus        78 ~~G~d~l~d   86 (154)
                      ..|....++
T Consensus       274 ~l~~tk~N~  282 (289)
T d1xpua3         274 KLAMTKTND  282 (289)
T ss_dssp             HHTTSCSTH
T ss_pred             HHccCCCHH
Confidence            555455443

>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 3
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=7.8e-13  Score=93.04  Aligned_cols=86  Identities=22%  Similarity=0.266  Sum_probs=75.0

Q ss_pred             HHhhccccCcHHHHHHHHHHHHHHHccHhHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCC----------CCC
Q psy5596          43 KSAIGEDMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYE----------NRT  112 (154)
Q Consensus        43 ~~v~~~~~~~~~~~~~a~~~~~~y~~~~eL~~ig~~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~----------~~~  112 (154)
                      |.+++     ++|+.+|+++...++++++|++++++.|.|.|+++|+.++.+|++| +.||.|+++.          .++
T Consensus         3 P~ivG-----e~Hy~~a~~V~~~LqrYkeLqdIIaiLG~dELSeeDk~~V~RARkl-qrfLsQpFfvae~fTg~~G~~V~   76 (118)
T d2jdid1           3 PNIVG-----SEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKI-QRFLSQPFQVAEVFTGHLGKLVP   76 (118)
T ss_dssp             HHHHC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHH-HHHHCCCCGGGHHHHSSCCCCCC
T ss_pred             ccccC-----hHHHHHHHHHHHHHHHhHHHHHHHHHcChhhcCHHHhHHHHHHHHH-HHHhcCcceeeeeecCCCcceec
Confidence            56677     4999999999999999999999999999999999999999999999 9999999985          477


Q ss_pred             HHHHHHHHHHHHhhCChHhhcCCChh
Q psy5596         113 VYESLDIGWQLLRIFPKEMLKRIPAS  138 (154)
Q Consensus       113 ~~~sl~~~~~ll~~~~~~~~~~i~~~  138 (154)
                      +.+|+.-...++    .|+++.+|++
T Consensus        77 l~dTi~g~~~Il----~G~~D~~pE~   98 (118)
T d2jdid1          77 LKETIKGFQQIL----AGEYDHLPEQ   98 (118)
T ss_dssp             HHHHHHHHHHHH----TTTTTTSCGG
T ss_pred             HHHHHHHHHHHh----CCCCCCCCHH
Confidence            888887655554    4677777775

>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 3
species: Bacillus sp., strain ps3 [TaxId: 1409]

Probab=99.40  E-value=9.4e-13  Score=92.04  Aligned_cols=81  Identities=20%  Similarity=0.264  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHccHhHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCC----------CCCHHHHHHHHHH
Q psy5596          53 KDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYE----------NRTVYESLDIGWQ  122 (154)
Q Consensus        53 ~~~~~~a~~~~~~y~~~~eL~~ig~~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~----------~~~~~~sl~~~~~  122 (154)
                      ++|+++|+++...++++++|++|+++.|.|.|+++|+.++.+|++| +.||.|+++.          .+++.+|+.-...
T Consensus         5 ~~Hy~~a~~v~~~LqrYkeLqDIIaiLG~dELSeeDk~~V~RARkl-qrFLsQpF~vaE~fTG~~G~~V~l~dTi~g~~~   83 (114)
T d1skye1           5 EEHYQVARKVQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRI-QFFLSQNFHVAEQFTGQPGSYVPVKETVRGFKE   83 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCTTHHHHHHHHHHHH-HHHTCBCCTTTHHHHSCCCCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcCHHHHHHHHHHHHH-HHHhcCCceeceeecCCCeeEeeHHHHHHHHHH
Confidence            4999999999999999999999999999999999999999999999 9999999986          4678888776555


Q ss_pred             HHhhCChHhhcCCChh
Q psy5596         123 LLRIFPKEMLKRIPAS  138 (154)
Q Consensus       123 ll~~~~~~~~~~i~~~  138 (154)
                      ++    .|+++.+|++
T Consensus        84 Il----~G~~D~~pE~   95 (114)
T d1skye1          84 IL----EGKYDHLPED   95 (114)
T ss_dssp             HH----TTTTTTSCGG
T ss_pred             Hh----CCCCCCCCHH
Confidence            54    4677888775

>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 3
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=99.37  E-value=5.7e-13  Score=92.56  Aligned_cols=81  Identities=19%  Similarity=0.322  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHHccHhHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCC----------CCHHHHHHHHHH
Q psy5596          53 KDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYEN----------RTVYESLDIGWQ  122 (154)
Q Consensus        53 ~~~~~~a~~~~~~y~~~~eL~~ig~~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~----------~~~~~sl~~~~~  122 (154)
                      ++|+++|+++...++++++|++++++.|.+.|+++++.++.+|++| +.||.|+++..          +++.+|+.    
T Consensus         5 ~~Hy~~a~~v~~iLqrYkeLqdIIailG~dELSeeDk~~v~RArkl-q~FLtQpFfvae~fTg~~G~~V~l~dTi~----   79 (108)
T d1fx0b1           5 EEHYEIAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKI-ERFLSQPFFVAEVFTGSPGKYVGLAETIR----   79 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCTTTHHHHHHHHHH-HHHTCCCCSSCTTTSCSCCCCCCHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcChhhhHHHHHHHHH-HHHhccccccceecCCCCcCEecHHHHHh----
Confidence            5999999999999999999999999999999999999999999999 99999999975          44555554    


Q ss_pred             HHhhCChHhhcCCChh
Q psy5596         123 LLRIFPKEMLKRIPAS  138 (154)
Q Consensus       123 ll~~~~~~~~~~i~~~  138 (154)
                      -++.+-.|+++.+|++
T Consensus        80 g~~~IL~G~~D~~pE~   95 (108)
T d1fx0b1          80 GFQLILSGELDSLPEQ   95 (108)
T ss_dssp             HHHTTTTTTTSSSCGG
T ss_pred             hHHHHhCCCcCCCCHH
Confidence            4555667789999886

>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 3
species: Bacillus sp., strain ps3 [TaxId: 1409]

Probab=98.38  E-value=6.6e-07  Score=63.46  Aligned_cols=83  Identities=14%  Similarity=0.134  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHccHhHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhc
Q psy5596          54 DHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLK  133 (154)
Q Consensus        54 ~~~~~a~~~~~~y~~~~eL~~ig~~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~  133 (154)
                      ...++++.++-.|++++||..+.++.  .++++..+..+.+++++ ...|+|+.++|++.++.+..++    ++.+|.++
T Consensus         3 amKkvag~lkl~laQyrEle~FaqFg--sdLD~~t~~~L~rG~rl-~ElLKQ~q~sP~~v~eQv~iLy----A~~~G~LD   75 (131)
T d1skyb1           3 AMKKVAGTLRLDLAAYRELEAFAQFG--SDLDKATQANVARGART-VEVLKQDLHQPIPVEKQVLIIY----ALTRGFLD   75 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-CCCC---CC-CHHHHHHHHHHHHH-HHHHCCCTTCCCCHHHHHHHHH----HTTTTTTT
T ss_pred             hHHHHhhHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHhhHHH-HHHHhCCCCCCcCHHHHHHHHH----HHhCCccc
Confidence            45778899999999999999999983  58999999999999999 9999999999999998888666    44677889


Q ss_pred             CCChhHHHhh
Q psy5596         134 RIPASTLAEF  143 (154)
Q Consensus       134 ~i~~~~i~~~  143 (154)
                      .||.+-|.+|
T Consensus        76 ~Ipv~~I~~f   85 (131)
T d1skyb1          76 DIPVEDVRRF   85 (131)
T ss_dssp             TSCGGGHHHH
T ss_pred             cCcHHHHHHH
Confidence            9999888877

>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 3
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=98.38  E-value=8.5e-07  Score=62.70  Aligned_cols=83  Identities=13%  Similarity=0.099  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHccHhHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhc
Q psy5596          54 DHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLK  133 (154)
Q Consensus        54 ~~~~~a~~~~~~y~~~~eL~~ig~~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~  133 (154)
                      ...++++.++-.|++++||..+.++ | .++.+..+..+.+|+++ ...|+|+.|+|++.++.+..++.+    .+|.++
T Consensus         3 amk~vag~lkl~laQy~El~aFaqf-g-sdlD~~t~~~l~rG~rl-~ElLKQ~q~~Pl~v~eQv~iLyA~----~~G~LD   75 (129)
T d1fx0a1           3 AMKKVAGKLKLELAQFAELEAFAQF-A-SDLDKATQNQLARGQRL-RELLKQPQSAPLTVEEQVMTIYTG----TNGYLD   75 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTGGG-C-SSCCHHHHHHHHHHHHH-HHHHCCCTTCCCCHHHHHHHHHHH----HTTSSS
T ss_pred             hHHHHhhHHHHHHHHHHHHHHHHhh-c-cchhHHHHHhhhHHHHH-HHHHHcccccCCCHHHHHHHHHHH----HcCccc
Confidence            4577889999999999999999997 3 58999999999999999 999999999999999998887766    456788


Q ss_pred             CCChhHHHhh
Q psy5596         134 RIPASTLAEF  143 (154)
Q Consensus       134 ~i~~~~i~~~  143 (154)
                      .||.+-|..|
T Consensus        76 ~ipv~~I~~f   85 (129)
T d1fx0a1          76 SLELDQVRKY   85 (129)
T ss_dssp             SSCHHHHHHH
T ss_pred             cCCHHHHHHH
Confidence            9999888877

>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain 3 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.31  E-value=1.3e-06  Score=61.89  Aligned_cols=83  Identities=17%  Similarity=0.268  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHccHhHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhCChHhhc
Q psy5596          54 DHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFVSQGNYENRTVYESLDIGWQLLRIFPKEMLK  133 (154)
Q Consensus        54 ~~~~~a~~~~~~y~~~~eL~~ig~~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~sl~~~~~ll~~~~~~~~~  133 (154)
                      ...++++.++-.|++++||..+.++ | .++.+..+..+.+|+++ ...|+|+.++|++..+.+..++.+    .+|.++
T Consensus         3 amkkvag~lkl~lAQyrEle~FaqF-~-sdlD~~t~~~l~rG~rl-~ElLKQ~q~~Pl~v~eQv~iL~A~----~~G~lD   75 (131)
T d2jdia1           3 AMKQVAGTMKLELAQYREVAAFAQF-G-SDLDAATQQLLSRGVRL-TELLKQGQYSPMAIEEQVAVIYAG----VRGYLD   75 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTGGGSSS-C-SSSCHHHHHHHHHHHHH-HHHTCCCSSCCCCHHHHHHHHHHH----HTTTTT
T ss_pred             hHHHHhhHHHHHHHHHHHHHHHHhh-h-hhhhHHHHhhhhhHHHH-HHHHhcccccchhHHHHHHHHHHH----hcCCcc
Confidence            5677889999999999999999997 3 58999999999999999 999999999999999998887755    356677


Q ss_pred             CCChhHHHhh
Q psy5596         134 RIPASTLAEF  143 (154)
Q Consensus       134 ~i~~~~i~~~  143 (154)
                      .||.+-|.+|
T Consensus        76 ~i~v~~I~~f   85 (131)
T d2jdia1          76 KLEPSKITKF   85 (131)
T ss_dssp             TSCGGGHHHH
T ss_pred             ccCHHHHHHH
Confidence            8887777666