Psyllid ID: psy5622

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MSALKSVHCGQDLGFVIRDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLIDKMF
Secondary Structure (PSIPRED)
cccHHHHHHHHHcccEEEEcccccccHHHHHHcccEEEEEccccccccccHHHHHHHHHHcccHHHHHccEEEcccccHHHHHHHHHHHccccEEEEccccccHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHccEEEccccccccccccccccHHHccHHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHccccEEcccccccccccccccccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHcHEEccccccccHHHHHHHHccEEEEEccccccccHHHHHHHHHHHHHccHHHHHccEEEEccccHHHHHHHHHHHccccEEEEccccccHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHcccEEEEEEccccccccccccHHHHccHHHHHHHHHHHcccccccEEEEEEEccccccEEEHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHcccEEEEccccEEcccEEEEcccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
msalksvhcgqdlgFVIRDQwfnskkshLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCyhgsrlnipvtvvmpivapiMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSsglsvlgydhpdimagqgtVGLEIVDQVANIDAivvpvggggliagvaydhpdimagqgTVGLEIVDQgvesdrcasfstaikhgkptpvsvqptladglavplvgwnafetAAPLIDKMF
Flexible Loop (DISEMBL)
msalksvhcgqdlgfvirDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFStaikhgkptpvsVQPTLADGLAVPLVGWNAFETAAPLIDKMF
Low Complexity Region (SEG)
MSALKSVHCGQDLGFVIRDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLIDKMF
Disordered region (IsUnstruct)
******VHCGQDLGFVIRDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLI****
Disordered Region (DISOPRED)
MSALKSVHCGQDLGFVIRDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLIDKMF
Disordered Region (DISEMBL)
********CGQDLGFVIRDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLIDKMF
Disordered Region (DISPRO)
*SALKSVHCGQDLGFVIRDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLIDKMF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSALKSVHCGQDLGFVIRDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLIDKMF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
P25306	595	Threonine dehydratase bio	N/A	N/A	0.828	0.374	0.383	7e-33
Q8NWQ4	346	L-threonine dehydratase c	yes	N/A	0.832	0.647	0.344	1e-28
Q6G9C4	346	L-threonine dehydratase c	yes	N/A	0.832	0.647	0.344	1e-28
Q6GGX0	346	L-threonine dehydratase c	yes	N/A	0.832	0.647	0.344	1e-28
Q5HFY5	346	L-threonine dehydratase c	yes	N/A	0.832	0.647	0.344	1e-28
Q2FYJ3	346	L-threonine dehydratase c	yes	N/A	0.832	0.647	0.344	1e-28
Q2FH01	346	L-threonine dehydratase c	N/A	N/A	0.832	0.647	0.344	1e-28
Q2YY67	346	L-threonine dehydratase c	yes	N/A	0.832	0.647	0.34	4e-28
P00927	576	Threonine dehydratase, mi	yes	N/A	0.828	0.387	0.362	6e-28
P46493	513	L-threonine dehydratase b	yes	N/A	0.847	0.444	0.371	2e-27

>sp|P25306|THD1_SOLLC Threonine dehydratase biosynthetic, chloroplastic OS=Solanum lycopersicum GN=TD PE=1 SV=1

 Score =  140 bits (354), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/240 (38%), Positives = 124/240 (51%), Gaps = 17/240 (7%)

Query: 29  LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
           LS+   +  ++K++  Q   SFK RGA   +  LS ++  KGVI+AS GNHAQ +   G 
Sbjct: 121 LSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREELDKGVITASAGNHAQGVALAGQ 180

Query: 89  RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
           RLN    +VMP   P +KI A R  G  V++ G    EA+  AL+   + GL YI     
Sbjct: 181 RLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFDEAQTHALELSEKDGLKYIP---- 236

Query: 149 SGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGT 208
                  +D P ++ GQGT+G EI  Q+ +I A+ +PVGGGGLIAGVA     I      
Sbjct: 237 ------PFDDPGVIKGQGTIGTEINRQLKDIHAVFIPVGGGGLIAGVATFFKQIAPNTKI 290

Query: 209 VGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLIDKM 268
           +       GVE    AS + ++  G    +S   T ADG+AV LVG   F     LID M
Sbjct: 291 I-------GVEPYGAASMTLSLHEGHRVKLSNVDTFADGVAVALVGEYTFAKCQELIDGM 343

Solanum lycopersicum (taxid: 4081)
EC: 4EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 9

>sp|Q8NWQ4|TDCB_STAAW L-threonine dehydratase catabolic TdcB OS=Staphylococcus aureus (strain MW2) GN=tdcB PE=3 SV=1

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 130/250 (52%), Gaps = 26/250 (10%)

Query: 25  KKSHLSE-LTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAM 83
           K  +LS+ +TK  +FLK +  Q TGSFK RGA   +  L+++QK+KG+I+AS GNHAQ +
Sbjct: 37  KSMYLSQSITKGNVFLKLENMQFTGSFKFRGASNKINHLTDEQKEKGIIAASAGNHAQGV 96

Query: 84  CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143
                 L I  T+VMP  AP  K QA + YGA VI++G +  E +    +   E G+T +
Sbjct: 97  ALTAKLLGIDATIVMPETAPQAKQQATKGYGAKVILKGKNFNETRLYMEELAKENGMTIV 156

Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPV----GGGGLIAGVAYDH 199
           +           YD   +MAGQGT+GLEI+D + N++ ++VPV       G+   +   +
Sbjct: 157 H----------PYDDKFVMAGQGTIGLEILDDIWNVNTVIVPVGGGGLIAGIATALKSFN 206

Query: 200 PDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFE 259
           P I          I+  GV+S+     + +      T   V  T+ADG  V + G   +E
Sbjct: 207 PSI---------HII--GVQSENVHGMAESFYKRDLTEHRVDSTIADGCDVKVPGEQTYE 255

Query: 260 TAAPLIDKMF 269
               L+D+  
Sbjct: 256 VVKHLVDEFI 265

Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.

Staphylococcus aureus (strain MW2) (taxid: 196620)

EC: 4

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 9

>sp|Q6G9C4|TDCB_STAAS L-threonine dehydratase catabolic TdcB OS=Staphylococcus aureus (strain MSSA476) GN=tdcB PE=3 SV=1

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 130/250 (52%), Gaps = 26/250 (10%)

Query: 25  KKSHLSE-LTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAM 83
           K  +LS+ +TK  +FLK +  Q TGSFK RGA   +  L+++QK+KG+I+AS GNHAQ +
Sbjct: 37  KSMYLSQSITKGNVFLKLENMQFTGSFKFRGASNKINHLTDEQKEKGIIAASAGNHAQGV 96

Query: 84  CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143
                 L I  T+VMP  AP  K QA + YGA VI++G +  E +    +   E G+T +
Sbjct: 97  ALTAKLLGIDATIVMPETAPQAKQQATKGYGAKVILKGKNFNETRLYMEELAKENGMTIV 156

Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPV----GGGGLIAGVAYDH 199
           +           YD   +MAGQGT+GLEI+D + N++ ++VPV       G+   +   +
Sbjct: 157 H----------PYDDKFVMAGQGTIGLEILDDIWNVNTVIVPVGGGGLIAGIATALKSFN 206

Query: 200 PDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFE 259
           P I          I+  GV+S+     + +      T   V  T+ADG  V + G   +E
Sbjct: 207 PSI---------HII--GVQSENVHGMAESFYKRDLTEHRVDSTIADGCDVKVPGEQTYE 255

Query: 260 TAAPLIDKMF 269
               L+D+  
Sbjct: 256 VVKHLVDEFI 265

Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.

Staphylococcus aureus (strain MSSA476) (taxid: 282459)

EC: 4

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 9

>sp|Q6GGX0|TDCB_STAAR L-threonine dehydratase catabolic TdcB OS=Staphylococcus aureus (strain MRSA252) GN=tdcB PE=3 SV=1

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 130/250 (52%), Gaps = 26/250 (10%)

Query: 25  KKSHLSE-LTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAM 83
           K  +LS+ +TK  +FLK +  Q TGSFK RGA   +  L+++QK+KG+I+AS GNHAQ +
Sbjct: 37  KSMYLSQSITKGNVFLKLENMQFTGSFKFRGASNKINHLTDEQKEKGIIAASAGNHAQGV 96

Query: 84  CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143
                 L I  T+VMP  AP  K QA + YGA VI++G +  E +    +   E G+T +
Sbjct: 97  ALTAKLLGIDATIVMPETAPQAKQQATKGYGAKVILKGKNFNETRLYMEELAKENGMTIV 156

Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPV----GGGGLIAGVAYDH 199
           +           YD   +MAGQGT+GLEI+D + N++ ++VPV       G+   +   +
Sbjct: 157 H----------PYDDKFVMAGQGTIGLEILDDIWNVNTVIVPVGGGGLIAGIATALKSFN 206

Query: 200 PDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFE 259
           P I          I+  GV+S+     + +      T   V  T+ADG  V + G   +E
Sbjct: 207 PSI---------HII--GVQSENVHGMAESFYKRDLTEHRVDSTIADGCDVKVPGEQTYE 255

Query: 260 TAAPLIDKMF 269
               L+D+  
Sbjct: 256 VVKHLVDEFI 265

Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.

Staphylococcus aureus (strain MRSA252) (taxid: 282458)

EC: 4

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 9

>sp|Q5HFY5|TDCB_STAAC L-threonine dehydratase catabolic TdcB OS=Staphylococcus aureus (strain COL) GN=tdcB PE=3 SV=1

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 130/250 (52%), Gaps = 26/250 (10%)

Query: 25  KKSHLSE-LTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAM 83
           K  +LS+ +TK  +FLK +  Q TGSFK RGA   +  L+++QK+KG+I+AS GNHAQ +
Sbjct: 37  KSMYLSQSITKGNVFLKLENMQFTGSFKFRGASNKINHLTDEQKEKGIIAASAGNHAQGV 96

Query: 84  CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143
                 L I  T+VMP  AP  K QA + YGA VI++G +  E +    +   E G+T +
Sbjct: 97  ALTAKLLGIDATIVMPETAPQAKQQATKGYGAKVILKGKNFNETRLYMEELAKENGMTIV 156

Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPV----GGGGLIAGVAYDH 199
           +           YD   +MAGQGT+GLEI+D + N++ ++VPV       G+   +   +
Sbjct: 157 H----------PYDDKFVMAGQGTIGLEILDDIWNVNTVIVPVGGGGLIAGIATALKSFN 206

Query: 200 PDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFE 259
           P I          I+  GV+S+     + +      T   V  T+ADG  V + G   +E
Sbjct: 207 PSI---------HII--GVQSENVHGMAESFYKRDLTEHRVDSTIADGCDVKVPGEQTYE 255

Query: 260 TAAPLIDKMF 269
               L+D+  
Sbjct: 256 VVKHLVDEFI 265

Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.

Staphylococcus aureus (strain COL) (taxid: 93062)

EC: 4

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 9

>sp|Q2FYJ3|TDCB_STAA8 L-threonine dehydratase catabolic TdcB OS=Staphylococcus aureus (strain NCTC 8325) GN=tdcB PE=3 SV=1

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 130/250 (52%), Gaps = 26/250 (10%)

Query: 25  KKSHLSE-LTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAM 83
           K  +LS+ +TK  +FLK +  Q TGSFK RGA   +  L+++QK+KG+I+AS GNHAQ +
Sbjct: 37  KSMYLSQSITKGNVFLKLENMQFTGSFKFRGASNKINHLTDEQKEKGIIAASAGNHAQGV 96

Query: 84  CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143
                 L I  T+VMP  AP  K QA + YGA VI++G +  E +    +   E G+T +
Sbjct: 97  ALTAKLLGIDATIVMPETAPQAKQQATKGYGAKVILKGKNFNETRLYMEELAKENGMTIV 156

Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPV----GGGGLIAGVAYDH 199
           +           YD   +MAGQGT+GLEI+D + N++ ++VPV       G+   +   +
Sbjct: 157 H----------PYDDKFVMAGQGTIGLEILDDIWNVNTVIVPVGGGGLIAGIATALKSFN 206

Query: 200 PDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFE 259
           P I          I+  GV+S+     + +      T   V  T+ADG  V + G   +E
Sbjct: 207 PSI---------HII--GVQSENVHGMAESFYKRDLTEHRVDSTIADGCDVKVPGEQTYE 255

Query: 260 TAAPLIDKMF 269
               L+D+  
Sbjct: 256 VVKHLVDEFI 265

Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.

Staphylococcus aureus (strain NCTC 8325) (taxid: 93061)

EC: 4

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 9

>sp|Q2FH01|TDCB_STAA3 L-threonine dehydratase catabolic TdcB OS=Staphylococcus aureus (strain USA300) GN=tdcB PE=3 SV=1

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 130/250 (52%), Gaps = 26/250 (10%)

Query: 25  KKSHLSE-LTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAM 83
           K  +LS+ +TK  +FLK +  Q TGSFK RGA   +  L+++QK+KG+I+AS GNHAQ +
Sbjct: 37  KSMYLSQSITKGNVFLKLENMQFTGSFKFRGASNKINHLTDEQKEKGIIAASAGNHAQGV 96

Query: 84  CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143
                 L I  T+VMP  AP  K QA + YGA VI++G +  E +    +   E G+T +
Sbjct: 97  ALTAKLLGIDATIVMPETAPQAKQQATKGYGAKVILKGKNFNETRLYMEELAKENGMTIV 156

Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPV----GGGGLIAGVAYDH 199
           +           YD   +MAGQGT+GLEI+D + N++ ++VPV       G+   +   +
Sbjct: 157 H----------PYDDKFVMAGQGTIGLEILDDIWNVNTVIVPVGGGGLIAGIATALKSFN 206

Query: 200 PDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFE 259
           P I          I+  GV+S+     + +      T   V  T+ADG  V + G   +E
Sbjct: 207 PSI---------HII--GVQSENVHGMAESFYKRDLTEHRVDSTIADGCDVKVPGEQTYE 255

Query: 260 TAAPLIDKMF 269
               L+D+  
Sbjct: 256 VVKHLVDEFI 265

Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.

Staphylococcus aureus (strain USA300) (taxid: 367830)

EC: 4

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 9

>sp|Q2YY67|TDCB_STAAB L-threonine dehydratase catabolic TdcB OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=tdcB PE=3 SV=2

 Score =  125 bits (313), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/250 (34%), Positives = 129/250 (51%), Gaps = 26/250 (10%)

Query: 25  KKSHLSE-LTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAM 83
           K  +LS+ +TK  +FLK +  Q TGSFK RGA   +  L+++QK+KG+I+AS GNHAQ +
Sbjct: 37  KSMYLSQSITKGNVFLKLENMQFTGSFKFRGASNKINHLTDEQKEKGIIAASAGNHAQGV 96

Query: 84  CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143
                 L I  T+VMP  AP  K QA + YG  VI++G +  E +    +   E G+T +
Sbjct: 97  ALTAKLLGIDATIVMPETAPQAKQQATKGYGTKVILKGKNFNETRLYMEELAKENGMTIV 156

Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPV----GGGGLIAGVAYDH 199
           +           YD   +MAGQGT+GLEI+D + N++ ++VPV       G+   +   +
Sbjct: 157 H----------PYDDKFVMAGQGTIGLEILDDIWNVNTVIVPVGGGGLIAGIATALKSFN 206

Query: 200 PDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFE 259
           P I          I+  GV+S+     + +      T   V  T+ADG  V + G   +E
Sbjct: 207 PSI---------HII--GVQSENVHGMAESFYKRDLTEHRVDSTIADGCDVKVPGEQTYE 255

Query: 260 TAAPLIDKMF 269
               L+D+  
Sbjct: 256 VVKHLVDEFI 265

Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.

Staphylococcus aureus (strain bovine RF122 / ET3-1) (taxid: 273036)

EC: 4

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 9

>sp|P00927|THDH_YEAST Threonine dehydratase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ILV1 PE=1 SV=2

 Score =  124 bits (312), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/243 (36%), Positives = 129/243 (53%), Gaps = 20/243 (8%)

Query: 29  LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
           LS      + LK++      SFK RGA   +  L + Q+ +GVI+ S GNHAQ + +   
Sbjct: 87  LSSRLNTNVILKREDLLPVFSFKLRGAYNMIAKLDDSQRNQGVIACSAGNHAQGVAFAAK 146

Query: 89  RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
            L IP T+VMP+  P +K Q   R G+ V++ G D  EAK    K   E GLT       
Sbjct: 147 HLKIPATIVMPVCTPSIKYQNVSRLGSQVVLYGNDFDEAKAECAKLAEERGLT------- 199

Query: 149 SGLSVLGYDHPDIMAGQGTVGLEIVDQV--AN-IDAIVVPVGGGGLIAGVAYDHPDIMAG 205
              ++  +DHP ++AGQGTV +EI+ QV  AN I A+ VPVGGGGLIAG+      +   
Sbjct: 200 ---NIPPFDHPYVIAGQGTVAMEILRQVRTANKIGAVFVPVGGGGLIAGIGAYLKRVAPH 256

Query: 206 QGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLI 265
              +G+E  D        A+   +++  + TP+ V  T ADG +V ++G   F  A  ++
Sbjct: 257 IKIIGVETYD-------AATLHNSLQRNQRTPLPVVGTFADGTSVRMIGEETFRVAQQVV 309

Query: 266 DKM 268
           D++
Sbjct: 310 DEV 312

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 4

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 9

>sp|P46493|ILVA_HAEIN L-threonine dehydratase biosynthetic IlvA OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ilvA PE=3 SV=1

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/245 (37%), Positives = 133/245 (54%), Gaps = 17/245 (6%)

Query: 24  SKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAM 83
            K   LSE     I++K++  Q   SFK RGA   +  LS +QK  GVI+AS GNHAQ +
Sbjct: 36  QKMGKLSERLHNNIWIKREDRQPVNSFKLRGAYAMISSLSAEQKAAGVIAASAGNHAQGV 95

Query: 84  CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143
                +L +   +VMP   P +K+ A R +G  V++ GA+  EAK  A++   E  +T+I
Sbjct: 96  ALSAKQLGLKALIVMPQNTPSIKVDAVRGFGGEVLLHGANFDEAKAKAIELSKEKNMTFI 155

Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIM 203
                       +DHP ++AGQGT+ +E++ QVA++D + V VGGGGL AGVA     I+
Sbjct: 156 P----------PFDHPLVIAGQGTLAMEMLQQVADLDYVFVQVGGGGLAAGVA-----IL 200

Query: 204 AGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAP 263
             Q    ++I+  GVES   A    A+  G+PT ++     ADG+AV  +G   F     
Sbjct: 201 LKQFMPEIKII--GVESKDSACLKAALDKGEPTDLTHIGLFADGVAVKRIGDETFRLCQQ 258

Query: 264 LIDKM 268
            +D M
Sbjct: 259 YLDDM 263

Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 4

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
380025363	481	PREDICTED: threonine dehydratase catabol	0.825	0.461	0.635	9e-80
66508985	464	PREDICTED: threonine dehydratase catabol	0.825	0.478	0.619	7e-79
350417507	431	PREDICTED: threonine dehydratase catabol	0.840	0.524	0.637	6e-78
340714159	466	PREDICTED: threonine dehydratase catabol	0.840	0.484	0.629	2e-77
340714157	431	PREDICTED: threonine dehydratase catabol	0.840	0.524	0.629	3e-77
66508989	475	PREDICTED: threonine dehydratase catabol	0.825	0.467	0.599	5e-76
443721874	425	hypothetical protein CAPTEDRAFT_176201 [	0.817	0.517	0.570	6e-72
307196301	425	Threonine dehydratase catabolic [Harpegn	0.836	0.529	0.654	2e-70
157137232	463	threonine dehydratase/deaminase [Aedes a	0.843	0.490	0.614	1e-69
270009444	471	hypothetical protein TcasGA2_TC008704 [T	0.840	0.479	0.604	1e-69

>gi|380025363|ref|XP_003696444.1| PREDICTED: threonine dehydratase catabolic-like [Apis florea]

 Score =  302 bits (774), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 157/247 (63%), Positives = 188/247 (76%), Gaps = 25/247 (10%)

Query: 26  KSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCY 85
           KS LS+   ++++LKKDF QVTGSFKERGA YAL+MLSE+QKK GVISASLGNHA A+CY
Sbjct: 95  KSRLSDTIGVDLYLKKDFLQVTGSFKERGARYALVMLSEEQKKIGVISASLGNHAGALCY 154

Query: 86  HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYING 145
           HG +L IPVTVVMP++APIMKI ACR+YGA VIV+G DM+EA+ IAL++  E GLTYIN 
Sbjct: 155 HGYKLGIPVTVVMPVIAPIMKIVACRQYGANVIVDGLDMEEARRIALRRAKEKGLTYIN- 213

Query: 146 YLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYD----HPD 201
                    GYDHPDI+AGQGT+GLEIV+QV NIDA+V+P+GGGGLIAGVA      HP 
Sbjct: 214 ---------GYDHPDIVAGQGTLGLEIVEQVPNIDAVVIPIGGGGLIAGVALAVKSLHPS 264

Query: 202 IMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETA 261
           +          I+  GVES+ C SF  A K G+PT   V PTLA+GLAVP+VG+NAF TA
Sbjct: 265 VT---------II--GVESEMCPSFYKARKAGRPTYTPVGPTLAEGLAVPVVGYNAFATA 313

Query: 262 APLIDKM 268
            PLIDK+
Sbjct: 314 NPLIDKL 320

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66508985|ref|XP_624902.1| PREDICTED: threonine dehydratase catabolic-like [Apis mellifera]

 Score =  299 bits (766), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 153/247 (61%), Positives = 189/247 (76%), Gaps = 25/247 (10%)

Query: 26  KSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCY 85
           KS LS+   ++++LKKDF QVTGSFKERGA YAL+MLS++QKK GVISASLGNHA A+CY
Sbjct: 75  KSRLSDTIGVDLYLKKDFLQVTGSFKERGARYALVMLSDEQKKIGVISASLGNHAGALCY 134

Query: 86  HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYING 145
           HG +L IPVTVVMP++APIMKI ACR+YGA VIV+G DM+EA+ IAL++  E GLTYIN 
Sbjct: 135 HGYKLGIPVTVVMPVIAPIMKIVACRQYGANVIVDGLDMEEARRIALRRAKEKGLTYIN- 193

Query: 146 YLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYD----HPD 201
                    GYD+PD++AGQGT+GLEIV+QV+NIDA+VVP+GGGGLIAGVA      HP+
Sbjct: 194 ---------GYDYPDVIAGQGTLGLEIVEQVSNIDAVVVPIGGGGLIAGVALAVKNLHPN 244

Query: 202 IMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETA 261
           +          I+  GVES++C SF  A K  +PT   +  TLADGLAVP+VG+NAF TA
Sbjct: 245 VT---------II--GVESEKCPSFYKARKADRPTYTRIDSTLADGLAVPVVGYNAFATA 293

Query: 262 APLIDKM 268
            PLIDK+
Sbjct: 294 NPLIDKL 300

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417507|ref|XP_003491456.1| PREDICTED: threonine dehydratase catabolic-like [Bombus impatiens]

 Score =  296 bits (758), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 155/243 (63%), Positives = 184/243 (75%), Gaps = 17/243 (6%)

Query: 26  KSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCY 85
           KS LS+   ++++LKKDF Q TGSFKERGA YAL+ML+E+QKK GVISASLGNHA A+ Y
Sbjct: 42  KSRLSDAMGIDLYLKKDFLQTTGSFKERGARYALVMLTEEQKKIGVISASLGNHALALSY 101

Query: 86  HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYING 145
           HG +LNIPVTVVMP+VAPIMKI ACR+YGA VIV+G DM EAK IAL +  E GLTYIN 
Sbjct: 102 HGYKLNIPVTVVMPVVAPIMKIAACRQYGANVIVDGLDMGEAKRIALGQAKENGLTYIN- 160

Query: 146 YLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAG 205
                    GYDHPDIMAGQGT+GLEIV+QV++IDA+VVP+GGGGLIAGVA     +   
Sbjct: 161 ---------GYDHPDIMAGQGTLGLEIVEQVSDIDAVVVPIGGGGLIAGVALAVKTLQP- 210

Query: 206 QGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLI 265
                ++I+  GVES+RC SF  A K  +PT   +  TLADGLAVP VG+NAF TA PLI
Sbjct: 211 ----NVQII--GVESERCPSFYKARKADRPTYTRIDSTLADGLAVPKVGYNAFATANPLI 264

Query: 266 DKM 268
           DK+
Sbjct: 265 DKL 267

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714159|ref|XP_003395599.1| PREDICTED: threonine dehydratase catabolic-like isoform 2 [Bombus terrestris]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 153/243 (62%), Positives = 184/243 (75%), Gaps = 17/243 (6%)

Query: 26  KSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCY 85
           KS LS+   ++++LKKDF Q TGSFKERGA YAL+ML+++QKK GVISASLGNHA A+ Y
Sbjct: 77  KSRLSDAMGIDLYLKKDFLQTTGSFKERGARYALVMLTDEQKKIGVISASLGNHALALSY 136

Query: 86  HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYING 145
           HG +LNIPVTVVMP++APIMKI ACR+YGA VIV+G DM EAK IAL++  E GLTYIN 
Sbjct: 137 HGYKLNIPVTVVMPVLAPIMKIAACRQYGANVIVDGLDMGEAKGIALRQAKENGLTYIN- 195

Query: 146 YLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAG 205
                    GYDHPDIMAGQGT+GLEIV+QV +IDA+VVP+GGGGLIAGVA     +   
Sbjct: 196 ---------GYDHPDIMAGQGTLGLEIVEQVPDIDAVVVPIGGGGLIAGVALAVKTLQP- 245

Query: 206 QGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLI 265
                ++I+  GVES+RC SF  A K  +PT   +  TLADGLAVP VG+NAF TA PLI
Sbjct: 246 ----NVQII--GVESERCPSFYKARKADRPTYTRIDSTLADGLAVPKVGYNAFATANPLI 299

Query: 266 DKM 268
           DK+
Sbjct: 300 DKL 302

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714157|ref|XP_003395598.1| PREDICTED: threonine dehydratase catabolic-like isoform 1 [Bombus terrestris]

 Score =  294 bits (752), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 153/243 (62%), Positives = 184/243 (75%), Gaps = 17/243 (6%)

Query: 26  KSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCY 85
           KS LS+   ++++LKKDF Q TGSFKERGA YAL+ML+++QKK GVISASLGNHA A+ Y
Sbjct: 42  KSRLSDAMGIDLYLKKDFLQTTGSFKERGARYALVMLTDEQKKIGVISASLGNHALALSY 101

Query: 86  HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYING 145
           HG +LNIPVTVVMP++APIMKI ACR+YGA VIV+G DM EAK IAL++  E GLTYIN 
Sbjct: 102 HGYKLNIPVTVVMPVLAPIMKIAACRQYGANVIVDGLDMGEAKGIALRQAKENGLTYIN- 160

Query: 146 YLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAG 205
                    GYDHPDIMAGQGT+GLEIV+QV +IDA+VVP+GGGGLIAGVA     +   
Sbjct: 161 ---------GYDHPDIMAGQGTLGLEIVEQVPDIDAVVVPIGGGGLIAGVALAVKTLQP- 210

Query: 206 QGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLI 265
                ++I+  GVES+RC SF  A K  +PT   +  TLADGLAVP VG+NAF TA PLI
Sbjct: 211 ----NVQII--GVESERCPSFYKARKADRPTYTRIDSTLADGLAVPKVGYNAFATANPLI 264

Query: 266 DKM 268
           DK+
Sbjct: 265 DKL 267

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66508989|ref|XP_392584.2| PREDICTED: threonine dehydratase catabolic-like [Apis mellifera]

 Score =  290 bits (742), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 148/247 (59%), Positives = 183/247 (74%), Gaps = 25/247 (10%)

Query: 26  KSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCY 85
           KS LS+   ++++LKKDF QVTGSFKERGA YAL+ML+++QKK GV+SAS GNHA A+ Y
Sbjct: 89  KSRLSDAIGVDLYLKKDFLQVTGSFKERGARYALMMLTDEQKKLGVVSASCGNHAAAISY 148

Query: 86  HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYING 145
           HG +L IPVTVVMP++AP++KI ACR+YGA VI+ G DM+EA+  AL+ G E GL YIN 
Sbjct: 149 HGYKLGIPVTVVMPVIAPVIKIIACRQYGANVIIHGPDMEEARRTALRTGKEKGLIYIN- 207

Query: 146 YLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYD----HPD 201
                    GYDHPDI+AGQGT+GLEIV+QV NIDA+V+P+GGGGLIAGVA      HP 
Sbjct: 208 ---------GYDHPDIVAGQGTLGLEIVEQVPNIDAVVIPIGGGGLIAGVALAVKSLHPG 258

Query: 202 IMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETA 261
           +M             GVES+ C SF  A K G+PT  SV PTLA+GLAVP+VG+NAF TA
Sbjct: 259 VMI-----------IGVESEMCPSFYRARKAGRPTYTSVGPTLAEGLAVPVVGYNAFATA 307

Query: 262 APLIDKM 268
            PL+DK+
Sbjct: 308 NPLVDKV 314

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443721874|gb|ELU10999.1| hypothetical protein CAPTEDRAFT_176201 [Capitella teleta]

 Score =  276 bits (706), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 142/249 (57%), Positives = 173/249 (69%), Gaps = 29/249 (11%)

Query: 26  KSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCY 85
           KSH+S  T +EIF KK++ Q TGSFKERGA Y L+MLS +QKK GV++AS GNHA A+ +
Sbjct: 45  KSHMSSFTGIEIFFKKEYLQHTGSFKERGARYTLMMLSAEQKKIGVVAASAGNHALALAF 104

Query: 86  HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYING 145
           HG+ L IPV VVMPI+APIMK+  CR YGA V+V+GAD+ E++ IAL    + G  YIN 
Sbjct: 105 HGTSLKIPVYVVMPIIAPIMKVSMCRHYGAEVLVQGADINESRTIALSMAKKSGFMYIN- 163

Query: 146 YLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVA------YDH 199
                    GYDHP I+AGQGT+GLEIV+QV ++DA+V+PVGGGGLIAG A      Y H
Sbjct: 164 ---------GYDHPHILAGQGTMGLEIVEQVPDVDAVVIPVGGGGLIAGTALAIKSLYPH 214

Query: 200 PDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFE 259
             ++             G ES+RCASFST+I+ G P       TLADGLAVPLVG NAF 
Sbjct: 215 VTVI-------------GAESERCASFSTSIEAGHPVYTKASSTLADGLAVPLVGVNAFA 261

Query: 260 TAAPLIDKM 268
           TAAPLIDKM
Sbjct: 262 TAAPLIDKM 270

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|307196301|gb|EFN77927.1| Threonine dehydratase catabolic [Harpegnathos saltator]

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 159/243 (65%), Positives = 178/243 (73%), Gaps = 18/243 (7%)

Query: 26  KSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCY 85
           KS LS  T M+I+LKKDF QVTGSFKERGA YALL L+++QK  GVISASLGNHA A+CY
Sbjct: 43  KSRLSG-TGMDIYLKKDFGQVTGSFKERGARYALLQLTDEQKCVGVISASLGNHALALCY 101

Query: 86  HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYING 145
           HG  L IPVTVVMP+VAPIMKI ACR+YGA VIVEG DM EAK IALK   E GL YIN 
Sbjct: 102 HGRELKIPVTVVMPVVAPIMKIAACRQYGANVIVEGNDMGEAKRIALKHAKEKGLIYIN- 160

Query: 146 YLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAG 205
                    GYDHP IMAGQGT+GLEIV+QV +IDA+VVPVGGGGLIAGVA         
Sbjct: 161 ---------GYDHPHIMAGQGTLGLEIVEQVPDIDAVVVPVGGGGLIAGVALAVKTFRPN 211

Query: 206 QGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLI 265
              +       GVES+RCAS+  A K GKPT   +Q TLADGLAVP+VG+NAF TA  LI
Sbjct: 212 CKII-------GVESERCASYHMARKAGKPTYTPIQSTLADGLAVPMVGYNAFATADSLI 264

Query: 266 DKM 268
           DK+
Sbjct: 265 DKL 267

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157137232|ref|XP_001663948.1| threonine dehydratase/deaminase [Aedes aegypti] gi|108880915|gb|EAT45140.1| AAEL003568-PA [Aedes aegypti]

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 150/244 (61%), Positives = 178/244 (72%), Gaps = 17/244 (6%)

Query: 26  KSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCY 85
           KSHLSE+  M+I+LKK+F Q TGSFKERGA YAL+ML  +Q+KKGVISASLGNHAQ +CY
Sbjct: 82  KSHLSEMVDMDIYLKKEFLQFTGSFKERGARYALVMLPTEQRKKGVISASLGNHAQGLCY 141

Query: 86  HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYING 145
           HG +L IPVTVVMP  A +MKIQ CR Y A VIV+G+DM EAK IALK   E GLTYIN 
Sbjct: 142 HGWKLGIPVTVVMPSKASLMKIQKCRDYHANVIVQGSDMCEAKKIALKMAHETGLTYIN- 200

Query: 146 YLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAG 205
                    GYDHP IMAGQGT+GLEIV+QV+NIDA+VVPVGGGGLIAGVA    ++   
Sbjct: 201 ---------GYDHPHIMAGQGTIGLEIVEQVSNIDAVVVPVGGGGLIAGVATAIKNLSPQ 251

Query: 206 QGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLI 265
              +       GVES++C SF+ A+++  P     + TLADGLAVP VG+NAF T  PL+
Sbjct: 252 TKII-------GVESEKCPSFTKALENEAPVYTPNKETLADGLAVPQVGYNAFATTVPLL 304

Query: 266 DKMF 269
           DKM 
Sbjct: 305 DKMI 308

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270009444|gb|EFA05892.1| hypothetical protein TcasGA2_TC008704 [Tribolium castaneum]

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 147/243 (60%), Positives = 181/243 (74%), Gaps = 17/243 (6%)

Query: 26  KSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCY 85
           +SH+S LT M+++LKKDF Q TGSFKERGA YA+LMLS ++++ GVI+ASLGNHAQA+CY
Sbjct: 73  RSHMSHLTGMDVYLKKDFLQNTGSFKERGARYAMLMLSPERRQNGVIAASLGNHAQAVCY 132

Query: 86  HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYING 145
           HG  L IPVTVVMPI+APIMKIQ C+ + A VI+EG DM EAK IA+K   E G TYIN 
Sbjct: 133 HGYLLGIPVTVVMPIIAPIMKIQKCKEFNANVIMEGKDMAEAKKIAIKMAKEKGYTYIN- 191

Query: 146 YLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAG 205
                    GYDHP I+AGQGT+ LEI++QV +IDAIVVP GGGGL+AGVA         
Sbjct: 192 ---------GYDHPQIIAGQGTIALEILEQVEDIDAIVVPTGGGGLLAGVA-------VA 235

Query: 206 QGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLI 265
             T+  +I   GVES+RCASFS A+   KP   +++ TLADGLAVP+VG+NA+ETA  L+
Sbjct: 236 VKTLNPKIKIIGVESERCASFSKAMDAEKPVSTAIEGTLADGLAVPMVGYNAWETAKSLV 295

Query: 266 DKM 268
           DKM
Sbjct: 296 DKM 298

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
FB|FBgn0037684	469	CG8129 [Drosophila melanogaste	0.598	0.343	0.672	9.9e-55
WB|WBGene00010456	499	K01C8.1 [Caenorhabditis elegan	0.587	0.316	0.577	1.3e-45
WB|WBGene00021787	448	Y51H7C.9 [Caenorhabditis elega	0.602	0.361	0.526	5.3e-40
SGD|S000000888	576	ILV1 "Threonine deaminase" [Sa	0.825	0.385	0.372	1.8e-32
TAIR|locus:2100078	592	OMR1 "L-O-methylthreonine resi	0.821	0.373	0.380	1.6e-30
TIGR_CMR|CHY_2459	409	CHY_2459 "threonine dehydratas	0.736	0.484	0.370	2.3e-30
TIGR_CMR|CJE_0915	403	CJE_0915 "threonine dehydratas	0.635	0.424	0.387	4.4e-29
TIGR_CMR|BA_2469	333	BA_2469 "threonine dehydratase	0.602	0.486	0.401	7.1e-29
SGD|S000001701	326	SRY1 "3-hydroxyaspartate dehyd	0.695	0.573	0.376	2.4e-28
UNIPROTKB|Q9GZT4	340	SRR "Serine racemase" [Homo sa	0.832	0.658	0.354	3.1e-28

FB|FBgn0037684 CG8129 [Drosophila melanogaster (taxid:7227)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 115/171 (67%), Positives = 134/171 (78%)

Query:    26 KSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCY 85
             KS  S+L  ME++LKKDF Q TGSFKERGA YALL L+E+QK+ GVISASLGNHAQA+CY
Sbjct:    82 KSTSSDLYGMELYLKKDFLQYTGSFKERGARYALLSLTEEQKRTGVISASLGNHAQALCY 141

Query:    86 HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYING 145
             HG +LNIPVTVVMP  APIMKIQ CR Y A VIV+G DM EAK++A++   E GL Y+NG
Sbjct:   142 HGWKLNIPVTVVMPKAAPIMKIQKCRNYKARVIVDGNDMGEAKSLAMRMSREEGLLYVNG 201

Query:   146 YLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVA 196
             Y          DHP IMAGQGT+GLEI++QV   DA+VVPVGGGGLIAG+A
Sbjct:   202 Y----------DHPHIMAGQGTIGLEILEQVPEPDAVVVPVGGGGLIAGIA 242

GO:0004794 "L-threonine ammonia-lyase activity" evidence=ISS

GO:0016597 "amino acid binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

WB|WBGene00010456 K01C8.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 97/168 (57%), Positives = 124/168 (73%)

Query:    29 LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
             LS   +M+++ KK++ QVTGSFKERGA YAL  ++E  KK GVI+AS GNHA A+ YHG 
Sbjct:   126 LSSKCEMDLYFKKEYLQVTGSFKERGARYALSKMAEQFKKAGVIAASAGNHALALSYHGQ 185

Query:    89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
             ++ IPVTVVMP++AP+MKIQ CR  GATVI++G  +  AK+ AL+   E  L YINGY  
Sbjct:   186 QMGIPVTVVMPVIAPLMKIQFCRSLGATVILKGESIAVAKDFALRHAKENHLKYINGY-- 243

Query:   149 SGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVA 196
                     D  DI+AGQGT+GLEI+DQV ++D I+VPVGGGGLIAG+A
Sbjct:   244 --------DAIDILAGQGTIGLEILDQVPDVDTILVPVGGGGLIAGIA 283

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0004794 "L-threonine ammonia-lyase activity" evidence=IEA

GO:0006567 "threonine catabolic process" evidence=IEA

WB|WBGene00021787 Y51H7C.9 [Caenorhabditis elegans (taxid:6239)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 91/173 (52%), Positives = 119/173 (68%)

Query:    25 KKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAM 83
             +KS  LS+L  M I+LK +  Q TGSFKERGA YAL  L E++KK GV +AS GNHA A+
Sbjct:    61 RKSRCLSKLFDMNIYLKMEVNQDTGSFKERGARYALQNLPEEKKKAGVYAASAGNHALAL 120

Query:    84 CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143
               HG +L + V VVMP +AP+MKI  C+  GA ++V+G D+ E++ IAL+   +   TYI
Sbjct:   121 SLHGKQLGVEVNVVMPKIAPLMKINRCQDLGANILVQGEDIAESREIALRMAHDSNGTYI 180

Query:   144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVA 196
             NGY          DH DI+AG GT G+EI++Q+   DAI+VPVGGGGL+AGVA
Sbjct:   181 NGY----------DHYDILAGAGTTGIEILEQIQMPDAILVPVGGGGLVAGVA 223

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

SGD|S000000888 ILV1 "Threonine deaminase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 359 (131.4 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 91/244 (37%), Positives = 134/244 (54%)

Query:    29 LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
             LS      + LK++      SFK RGA   +  L + Q+ +GVI+ S GNHAQ + +   
Sbjct:    87 LSSRLNTNVILKREDLLPVFSFKLRGAYNMIAKLDDSQRNQGVIACSAGNHAQGVAFAAK 146

Query:    89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
              L IP T+VMP+  P +K Q   R G+ V++ G D  EAK    K   E GLT       
Sbjct:   147 HLKIPATIVMPVCTPSIKYQNVSRLGSQVVLYGNDFDEAKAECAKLAEERGLT------- 199

Query:   149 SGLSVLGYDHPDIMAGQGTVGLEIVDQV--AN-IDAIVVPVGGGGLIAGV-AYDHPDIMA 204
                ++  +DHP ++AGQGTV +EI+ QV  AN I A+ VPVGGGGLIAG+ AY       
Sbjct:   200 ---NIPPFDHPYVIAGQGTVAMEILRQVRTANKIGAVFVPVGGGGLIAGIGAY------L 250

Query:   205 GQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPL 264
              +    ++I+  GVE+   A+   +++  + TP+ V  T ADG +V ++G   F  A  +
Sbjct:   251 KRVAPHIKII--GVETYDAATLHNSLQRNQRTPLPVVGTFADGTSVRMIGEETFRVAQQV 308

Query:   265 IDKM 268
             +D++
Sbjct:   309 VDEV 312

GO:0006567 "threonine catabolic process" evidence=IGI

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA

GO:0009097 "isoleucine biosynthetic process" evidence=IEA;IMP

GO:0016829 "lyase activity" evidence=IEA

GO:0004794 "L-threonine ammonia-lyase activity" evidence=IEA;IMP

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

TAIR|locus:2100078 OMR1 "L-O-methylthreonine resistant 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 1.6e-30, P = 1.6e-30
 Identities = 91/239 (38%), Positives = 127/239 (53%)

Query:    29 LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
             LS+   + ++LK++  Q   SFK RGA   ++ L  DQ  KGVI +S GNHAQ +    S
Sbjct:   119 LSKRLGVRMYLKREDLQPVFSFKLRGAYNMMVKLPADQLAKGVICSSAGNHAQGVALSAS 178

Query:    89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
             +L     +VMP+  P +K QA    GATV++ G    +A+  A  +  E GLT+I  +  
Sbjct:   179 KLGCTAVIVMPVTTPEIKWQAVENLGATVVLFGDSYDQAQAHAKIRAEEEGLTFIPPF-- 236

Query:   149 SGLSVLGYDHPDIMAGQGTVGLEIVDQVAN-IDAIVVPVGGGGLIAGVAYDHPDIMAGQG 207
                     DHPD++AGQGTVG+EI  Q    + AI VPVGGGGLIAG+A       A   
Sbjct:   237 --------DHPDVIAGQGTVGMEITRQAKGPLHAIFVPVGGGGLIAGIA-------AYVK 281

Query:   208 TVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLID 266
              V  E+   GVE     + + ++ HG+   +      ADG+AV  VG   F  +  L+D
Sbjct:   282 RVSPEVKIIGVEPADANAMALSLHHGERVILDQVGGFADGVAVKEVGEETFRISRNLMD 340

GO:0003824 "catalytic activity" evidence=IEA

GO:0004794 "L-threonine ammonia-lyase activity" evidence=IEA;ISS;IMP

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0009097 "isoleucine biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TIGR_CMR|CHY_2459 CHY_2459 "threonine dehydratase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 77/208 (37%), Positives = 120/208 (57%)

Query:    29 LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
             LSE+T   I+LK +  Q TGSFK RGA Y +  LSE++KK+GV+++S GNHAQ +    +
Sbjct:    29 LSEMTGNHIYLKMENLQRTGSFKLRGAYYKIASLSENEKKRGVVASSAGNHAQGVALAAT 88

Query:    89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
                I  T+VMP  AP+ KI+A  +YGA V++ G    EA   A +   E   T+I+ +  
Sbjct:    89 LYGIRSTIVMPRHAPLSKIKATSQYGAKVVLHGNVYDEAYEEAKRIQLETKATFIHPF-- 146

Query:   149 SGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGT 208
                     + P ++AGQGT+ LEI++ + +++ +VVP+GGGGLIAG+A    ++      
Sbjct:   147 --------NDPQVIAGQGTIALEILEDLPDVEVVVVPIGGGGLIAGIAVAIKNLRPKVHV 198

Query:   209 VGLEIVDQGVESDRCASFSTAIKHGKPT 236
             +G++  +    ++  A        G PT
Sbjct:   199 IGVQAKNMPSMAESLARGQLTNISGHPT 226

GO:0004794 "L-threonine ammonia-lyase activity" evidence=ISS

GO:0006549 "isoleucine metabolic process" evidence=ISS

TIGR_CMR|CJE_0915 CJE_0915 "threonine dehydratase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 71/183 (38%), Positives = 112/183 (61%)

Query:    14 GFVIRDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVIS 73
             GFV +  +  S  S LS++ + EI+LK +  Q+TG++K RGA   +  LS +QK+ GVI+
Sbjct:    16 GFVNKTPFIYS--SFLSDICQSEIYLKNENLQITGAYKIRGAYNKIANLSAEQKQHGVIA 73

Query:    74 ASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALK 133
             AS GNHAQ +     +  I   +VMP   P++K+ A +  GA VI++G +  EA   A  
Sbjct:    74 ASAGNHAQGVAISAKKFGIKAVIVMPESTPLLKVSATKALGAEVILKGDNFDEAYVFATS 133

Query:   134 KGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIA 193
                E  L++I+ +          +   +MAGQGT+ LE++D+++++D I+ PVGGGGLI+
Sbjct:   134 YAKENNLSFIHPF----------EDEFVMAGQGTLMLEMLDEISDLDMIIAPVGGGGLIS 183

Query:   194 GVA 196
             G+A
Sbjct:   184 GIA 186

GO:0004794 "L-threonine ammonia-lyase activity" evidence=ISS

GO:0006549 "isoleucine metabolic process" evidence=ISS

TIGR_CMR|BA_2469 BA_2469 "threonine dehydratase, catabolic" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 69/172 (40%), Positives = 105/172 (61%)

Query:    25 KKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMC 84
             K  +L+  T  EI LK +  Q+TGSFK RGA   +  L++ +K++GVI+ S GNHAQ + 
Sbjct:    31 KSFYLTSKTGGEIHLKLENMQLTGSFKFRGAFNKMSQLTDQEKERGVIACSAGNHAQGIA 90

Query:    85 YHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYIN 144
                  L I   +VMPI AP  K+ A + YG+ V++ G    +AK    +   E G TY++
Sbjct:    91 LSAHLLGIKSKIVMPISAPQAKVDATKGYGSEVVLHGETFDDAKAKCEEIIRETGETYLH 150

Query:   145 GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVA 196
              Y          D  ++MAGQGT+GL+I+D + ++D ++VP+GGGG+I+G+A
Sbjct:   151 PY----------DDVEVMAGQGTIGLDILDDMWDVDTVIVPIGGGGIISGIA 192

GO:0004794 "L-threonine ammonia-lyase activity" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

SGD|S000001701 SRY1 "3-hydroxyaspartate dehydratase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 75/199 (37%), Positives = 112/199 (56%)

Query:    29 LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
             L++    +I+ K + FQ  G+FK RGA  A+  LS++++ KGVI+ S GNHAQA+     
Sbjct:    31 LNDRLGAQIYFKGENFQRVGAFKFRGAMNAVSKLSDEKRSKGVIAFSSGNHAQAIALSAK 90

Query:    89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
              LN+P T+VMP  AP +K+ A   YGA +I      ++ + I  +  AE G   I  Y  
Sbjct:    91 LLNVPATIVMPEDAPALKVAATAGYGAHIIRYNRYTEDREQIGRQLAAEHGFALIPPY-- 148

Query:   149 SGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGT 208
                     DHPD++AGQGT   E++++V  +DA+ VP+GGGGL++G A     +  G   
Sbjct:   149 --------DHPDVIAGQGTSAKELLEEVGQLDALFVPLGGGGLLSGSALAARSLSPGCKI 200

Query:   209 VGLE--IVDQGVESDRCAS 225
              G+E    + G +S R  S
Sbjct:   201 FGVEPEAGNDGQQSFRSGS 219

GO:0016829 "lyase activity" evidence=IEA

GO:0030848 "threo-3-hydroxyaspartate ammonia-lyase activity" evidence=IEA;IMP;IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0042219 "cellular modified amino acid catabolic process" evidence=IDA;IMP

GO:0030378 "serine racemase activity" evidence=IDA;IMP

UNIPROTKB|Q9GZT4 SRR "Serine racemase" [Homo sapiens (taxid:9606)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 88/248 (35%), Positives = 136/248 (54%)

Query:    27 SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSED---QKKKGVISASLGNHAQAM 83
             S L++LT   +F K + FQ TGSFK RGA  A+  L  D   +K K V++ S GNH QA+
Sbjct:    32 SILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSSGNHGQAL 91

Query:    84 CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV-EGADMKEAKNIALKKGAELGLTY 142
              Y      IP  +V+P  AP  K  A + YGA+++  E +D +  +N+A +   E     
Sbjct:    92 TYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSD-ESRENVAKRVTEE----- 145

Query:   143 INGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDI 202
                  + G+ V     P ++AGQGT+ LE+++QV  +DA+VVPVGGGG++AG+A     +
Sbjct:   146 -----TEGIMVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVPVGGGGMLAGIAIT---V 197

Query:   203 MAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQP-TLADGLAVPLVGWNAFETA 261
              A + +V +   +    +D C  + + +K GK  P    P T+ADG+    +G N +   
Sbjct:   198 KALKPSVKVYAAEPS-NADDC--YQSKLK-GKLMPNLYPPETIADGVKSS-IGLNTWPII 252

Query:   262 APLIDKMF 269
               L+D +F
Sbjct:   253 RDLVDDIF 260

GO:0008721 "D-serine ammonia-lyase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007568 "aging" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0043278 "response to morphine" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0070179 "D-serine biosynthetic process" evidence=IDA

GO:0030378 "serine racemase activity" evidence=IDA

GO:0030165 "PDZ domain binding" evidence=IPI

GO:0043025 "neuronal cell body" evidence=IDA

GO:0006563 "L-serine metabolic process" evidence=IDA

GO:0009069 "serine family amino acid metabolic process" evidence=ISS

GO:0051289 "protein homotetramerization" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS;IDA

GO:0016594 "glycine binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0032496 "response to lipopolysaccharide" evidence=IEP

GO:0042803 "protein homodimerization activity" evidence=IDA;IPI

GO:0030170 "pyridoxal phosphate binding" evidence=ISS;IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0070178 "D-serine metabolic process" evidence=IDA

GO:0018114 "threonine racemase activity" evidence=ISS

GO:0003941 "L-serine ammonia-lyase activity" evidence=IDA

GO:0042866 "pyruvate biosynthetic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2PGG3	SRR_ARATH	5, ., 1, ., 1, ., 1, 8	0.3705	0.7695	0.6253	yes	N/A
Q9GZT4	SRR_HUMAN	5, ., 1, ., 1, ., 1, 8	0.3481	0.8364	0.6617	yes	N/A
Q6G9C4	TDCB_STAAS	4, ., 3, ., 1, ., 1, 9	0.344	0.8327	0.6473	yes	N/A
Q9QZX7	SRR_MOUSE	5, ., 1, ., 1, ., 1, 8	0.3360	0.8364	0.6637	yes	N/A
Q2FYJ3	TDCB_STAA8	4, ., 3, ., 1, ., 1, 9	0.344	0.8327	0.6473	yes	N/A
Q8NWQ4	TDCB_STAAW	4, ., 3, ., 1, ., 1, 9	0.344	0.8327	0.6473	yes	N/A
A0JNI4	SRR_BOVIN	5, ., 1, ., 1, ., 1, 8	0.3279	0.8364	0.6736	yes	N/A
Q76EQ0	SRR_RAT	5, ., 1, ., 1, ., 1, 8	0.3360	0.8364	0.6756	yes	N/A
Q99U50	TDCB_STAAM	4, ., 3, ., 1, ., 1, 9	0.336	0.8327	0.6473	yes	N/A
Q7A5L8	TDCB_STAAN	4, ., 3, ., 1, ., 1, 9	0.336	0.8327	0.6473	yes	N/A
Q2YY67	TDCB_STAAB	4, ., 3, ., 1, ., 1, 9	0.34	0.8327	0.6473	yes	N/A
Q5HFY5	TDCB_STAAC	4, ., 3, ., 1, ., 1, 9	0.344	0.8327	0.6473	yes	N/A
Q6GGX0	TDCB_STAAR	4, ., 3, ., 1, ., 1, 9	0.344	0.8327	0.6473	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.3.1.18	LOW CONFIDENCE prediction!
3rd Layer	4.3.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	269
cd01562	304	cd01562, Thr-dehyd, Threonine dehydratase: The fir	5e-90
PRK08198	404	PRK08198, PRK08198, threonine dehydratase; Provisi	1e-71
PRK07334	403	PRK07334, PRK07334, threonine dehydratase; Provisi	3e-69
COG1171	347	COG1171, IlvA, Threonine dehydratase [Amino acid t	5e-69
TIGR01127	380	TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, m	9e-61
PRK09224	504	PRK09224, PRK09224, threonine dehydratase; Reviewe	3e-56
PRK08638	333	PRK08638, PRK08638, threonine dehydratase; Validat	7e-55
TIGR01124	499	TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, b	5e-52
cd00640	244	cd00640, Trp-synth-beta_II, Tryptophan synthase be	2e-50
PRK06815	317	PRK06815, PRK06815, hypothetical protein; Provisio	8e-50
PRK08526	403	PRK08526, PRK08526, threonine dehydratase; Provisi	2e-49
PRK08639	420	PRK08639, PRK08639, threonine dehydratase; Validat	6e-47
PRK12483	521	PRK12483, PRK12483, threonine dehydratase; Reviewe	1e-46
PRK07476	322	PRK07476, eutB, threonine dehydratase; Provisional	1e-46
PRK07048	321	PRK07048, PRK07048, serine/threonine dehydratase;	2e-45
PRK08246	310	PRK08246, PRK08246, threonine dehydratase; Provisi	3e-44
PLN02550	591	PLN02550, PLN02550, threonine dehydratase	1e-43
TIGR02079	409	TIGR02079, THD1, threonine dehydratase	2e-43
PRK06382	406	PRK06382, PRK06382, threonine dehydratase; Provisi	6e-43
PLN02970	328	PLN02970, PLN02970, serine racemase	1e-41
pfam00291	295	pfam00291, PALP, Pyridoxal-phosphate dependent enz	1e-41
TIGR02991	317	TIGR02991, ectoine_eutB, ectoine utilization prote	9e-41
PRK06608	338	PRK06608, PRK06608, threonine dehydratase; Provisi	9e-33
PRK08813	349	PRK08813, PRK08813, threonine dehydratase; Provisi	5e-31
cd06448	316	cd06448, L-Ser-dehyd, Serine dehydratase is a pyri	6e-31
PRK06110	322	PRK06110, PRK06110, hypothetical protein; Provisio	2e-24
cd01563	324	cd01563, Thr-synth_1, Threonine synthase is a pyri	4e-24
COG0498	411	COG0498, ThrC, Threonine synthase [Amino acid tran	5e-16
PRK08329	347	PRK08329, PRK08329, threonine synthase; Validated	2e-15
PRK05638	442	PRK05638, PRK05638, threonine synthase; Validated	3e-14
cd01561	291	cd01561, CBS_like, CBS_like: This subgroup include	2e-13
PRK08197	394	PRK08197, PRK08197, threonine synthase; Validated	2e-12
COG0031	300	COG0031, CysK, Cysteine synthase [Amino acid trans	6e-11
PRK06260	397	PRK06260, PRK06260, threonine synthase; Validated	4e-10
TIGR00260	328	TIGR00260, thrC, threonine synthase	2e-09
PRK06352	351	PRK06352, PRK06352, threonine synthase; Validated	2e-08
PRK06721	352	PRK06721, PRK06721, threonine synthase; Reviewed	5e-08
PRK10717	330	PRK10717, PRK10717, cysteine synthase A; Provision	1e-07
TIGR01136	299	TIGR01136, cysKM, cysteine synthase	2e-07
PRK08206	399	PRK08206, PRK08206, diaminopropionate ammonia-lyas	6e-07
PRK07409	353	PRK07409, PRK07409, threonine synthase; Validated	2e-06
PRK06450	338	PRK06450, PRK06450, threonine synthase; Validated	3e-06
PLN02569	484	PLN02569, PLN02569, threonine synthase	5e-06
TIGR01139	298	TIGR01139, cysK, cysteine synthase A	5e-06
PRK06381	319	PRK06381, PRK06381, threonine synthase; Validated	3e-05
TIGR01138	290	TIGR01138, cysM, cysteine synthase B	3e-04
PLN02556	368	PLN02556, PLN02556, cysteine synthase/L-3-cyanoala	3e-04
TIGR01415	419	TIGR01415, trpB_rel, pyridoxal-phosphate dependent	0.001
TIGR03844	398	TIGR03844, cysteate_syn, cysteate synthase	0.001
TIGR01747	376	TIGR01747, diampropi_NH3ly, diaminopropionate ammo	0.001

>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen

 Score =  268 bits (688), Expect = 5e-90
 Identities = 105/244 (43%), Positives = 145/244 (59%), Gaps = 25/244 (10%)

Query: 29  LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
           LSEL   E++LK +  Q TGSFK RGA   LL LSE+++ KGV++AS GNHAQ + Y   
Sbjct: 26  LSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEERAKGVVAASAGNHAQGVAYAAK 85

Query: 89  RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
            L IP T+VMP  AP  K+ A R YGA V++ G D  EA+  A +   E GLT+I+    
Sbjct: 86  LLGIPATIVMPETAPAAKVDATRAYGAEVVLYGEDFDEAEAKARELAEEEGLTFIH---- 141

Query: 149 SGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVA--YDH--PDIMA 204
                  +D PD++AGQGT+GLEI++QV ++DA+ VPVGGGGLIAG+A       P+   
Sbjct: 142 ------PFDDPDVIAGQGTIGLEILEQVPDLDAVFVPVGGGGLIAGIATAVKALSPNT-- 193

Query: 205 GQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPL 264
                  +++  GVE +   + + ++  GKP  +    T+ADGLAV   G   FE    L
Sbjct: 194 -------KVI--GVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELTFEIIRKL 244

Query: 265 IDKM 268
           +D +
Sbjct: 245 VDDV 248

Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions. Length = 304

>gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional

 Score =  225 bits (575), Expect = 1e-71
 Identities = 94/243 (38%), Positives = 142/243 (58%), Gaps = 25/243 (10%)

Query: 28  HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHG 87
            LSELT  E++LK +  Q TGSFK RGA   +  LSE+++ +GV++AS GNHAQ + Y  
Sbjct: 30  TLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEERARGVVAASAGNHAQGVAYAA 89

Query: 88  SRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYL 147
           S L I  T+VMP  AP+ K++A R YGA V++ G    EA   A +   E G T+++   
Sbjct: 90  SLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGDVYDEALAKAQELAEETGATFVH--- 146

Query: 148 SSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAY----DHPDIM 203
                   +D PD++AGQGT+GLEI++ + ++D +VVP+GGGGLI+GVA       P++ 
Sbjct: 147 -------PFDDPDVIAGQGTIGLEILEDLPDVDTVVVPIGGGGLISGVATAVKALRPEV- 198

Query: 204 AGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAP 263
                    ++  GV+++   +   ++  G+P  +    T+ADG+AV   G   FE    
Sbjct: 199 --------RVI--GVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDLTFEIIRE 248

Query: 264 LID 266
           L+D
Sbjct: 249 LVD 251

Length = 404

>gnl|CDD|235994 PRK07334, PRK07334, threonine dehydratase; Provisional

 Score =  218 bits (559), Expect = 3e-69
 Identities = 95/240 (39%), Positives = 142/240 (59%), Gaps = 19/240 (7%)

Query: 29  LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
           LS++T  E++LK +  Q T SFKERGA   LL+L+E+++ +GVI+ S GNHAQ + YH  
Sbjct: 32  LSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEERARGVIAMSAGNHAQGVAYHAQ 91

Query: 89  RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
           RL IP T+VMP   P +K++  R +GA V++ G  + EA+  A +   E GLT+++    
Sbjct: 92  RLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGETLDEARAHARELAEEEGLTFVH---- 147

Query: 149 SGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGT 208
                  YD P ++AGQGTV LE+++   ++D +VVP+GGGGLI+G+A       A    
Sbjct: 148 ------PYDDPAVIAGQGTVALEMLEDAPDLDTLVVPIGGGGLISGMA-----TAAKALK 196

Query: 209 VGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLIDKM 268
             +EI+  GV+++   S   AIK G   P     T+A+G+AV   G    E    L+D +
Sbjct: 197 PDIEII--GVQTELYPSMYAAIK-GVALPCGGS-TIAEGIAVKQPGQLTLEIVRRLVDDI 252

Length = 403

>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and metabolism]

 Score =  216 bits (552), Expect = 5e-69
 Identities = 99/244 (40%), Positives = 135/244 (55%), Gaps = 20/244 (8%)

Query: 28  HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLS-EDQKKKGVISASLGNHAQAMCYH 86
            LSE    EI+LK++  Q  GSFK RGA   L  LS E+++  GVI+AS GNHAQ + Y 
Sbjct: 33  SLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAAGVIAASAGNHAQGVAYA 92

Query: 87  GSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGY 146
             RL I  T+VMP   P +K+ A R YGA VI+ G +  +A   A +   E GLT++   
Sbjct: 93  AKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGDNFDDAYAAAEELAEEEGLTFVP-- 150

Query: 147 LSSGLSVLGYDHPDIMAGQGTVGLEIVDQVAN-IDAIVVPVGGGGLIAGVAYDHPDIMAG 205
                    +D PD++AGQGT+ LEI++Q+ +  DA+ VPVGGGGLI+G+A         
Sbjct: 151 --------PFDDPDVIAGQGTIALEILEQLPDLPDAVFVPVGGGGLISGIA-------TA 195

Query: 206 QGTVGLEIVDQGVESDRCASFSTAIKHGK-PTPVSVQPTLADGLAVPLVGWNAFETAAPL 264
              +  EI   GVE +   S   ++K GK    +    T+ADGLAV   G   FE    L
Sbjct: 196 LKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLTFEILREL 255

Query: 265 IDKM 268
           +D +
Sbjct: 256 VDDI 259

Length = 347

>gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form

 Score =  196 bits (499), Expect = 9e-61
 Identities = 92/244 (37%), Positives = 138/244 (56%), Gaps = 17/244 (6%)

Query: 25  KKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMC 84
             + LS++T  E++LK +  Q TGSFK RGA   +  LSEDQ+++GV++AS GNHAQ + 
Sbjct: 5   YSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQRGVVAASAGNHAQGVA 64

Query: 85  YHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYIN 144
           Y   +  I   +VMP  AP  K++A + YGA VI+ G D  EA   A     E G  +++
Sbjct: 65  YAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVILHGDDYDEAYAFATSLAEEEGRVFVH 124

Query: 145 GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMA 204
                      +D   +MAGQGT+GLEI++ + ++D ++VPVGGGGLI+GVA       A
Sbjct: 125 ----------PFDDEFVMAGQGTIGLEIMEDIPDVDTVIVPVGGGGLISGVA-----SAA 169

Query: 205 GQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPL 264
            Q    ++++  GVE++   S   +++ GK   V    T+ADG+AV   G   F      
Sbjct: 170 KQINPNVKVI--GVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEY 227

Query: 265 IDKM 268
           +D +
Sbjct: 228 VDDV 231

A form of threonine dehydratase with two copies of the C-terminal domain pfam00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes [Amino acid biosynthesis, Pyruvate family]. Length = 380

>gnl|CDD|236417 PRK09224, PRK09224, threonine dehydratase; Reviewed

 Score =  187 bits (478), Expect = 3e-56
 Identities = 88/246 (35%), Positives = 132/246 (53%), Gaps = 28/246 (11%)

Query: 29  LSELTKMEIFLKKDFFQVTGSFKERGACYALLM-LSEDQKKKGVISASLGNHAQAMCYHG 87
           LS     ++ LK++  Q   SFK RGA Y  +  L+E+Q  +GVI+AS GNHAQ +    
Sbjct: 29  LSARLGNQVLLKREDLQPVFSFKLRGA-YNKMAQLTEEQLARGVITASAGNHAQGVALSA 87

Query: 88  SRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYL 147
           +RL I   +VMP+  P +K+ A R +G  V++ G    EA   A++   E GLT+I+   
Sbjct: 88  ARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGDSFDEAYAHAIELAEEEGLTFIH--- 144

Query: 148 SSGLSVLGYDHPDIMAGQGTVGLEIVDQVAN-IDAIVVPVGGGGLIAGVA----YDHPDI 202
                   +D PD++AGQGT+ +EI+ Q  + +DA+ VPVGGGGLIAGVA       P+I
Sbjct: 145 -------PFDDPDVIAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEI 197

Query: 203 MAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAA 262
                    +++  GVE +  A    A++ G+   +      ADG+AV  +G   F    
Sbjct: 198 ---------KVI--GVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFRLCQ 246

Query: 263 PLIDKM 268
             +D +
Sbjct: 247 EYVDDV 252

Length = 504

>gnl|CDD|236317 PRK08638, PRK08638, threonine dehydratase; Validated

 Score =  179 bits (456), Expect = 7e-55
 Identities = 91/248 (36%), Positives = 132/248 (53%), Gaps = 25/248 (10%)

Query: 25  KKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMC 84
           + ++LSE  K EIFLK +  Q TGSFK RGA   L  L++ +K+KGV++ S GNHAQ + 
Sbjct: 32  RSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVA 91

Query: 85  YHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYIN 144
              + L I   VVMP  AP  K+ A   YGA V++ G +  +      +   E G T+I 
Sbjct: 92  LSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGDNFNDTIAKVEEIVEEEGRTFIP 151

Query: 145 GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYD----HP 200
                      YD P ++AGQGT+GLEI++ + ++D ++VP+GGGGLIAG+A      +P
Sbjct: 152 ----------PYDDPKVIAGQGTIGLEILEDLWDVDTVIVPIGGGGLIAGIAVALKSINP 201

Query: 201 DIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFET 260
            I          I+  GV+S+     + +   G+ T      TLADG  V   G   +E 
Sbjct: 202 TI---------HII--GVQSENVHGMAASFYAGEITTHRTTGTLADGCDVSRPGNLTYEI 250

Query: 261 AAPLIDKM 268
              L+D +
Sbjct: 251 VRELVDDI 258

Length = 333

>gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long form

 Score =  176 bits (448), Expect = 5e-52
 Identities = 92/246 (37%), Positives = 134/246 (54%), Gaps = 18/246 (7%)

Query: 24  SKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAM 83
            K + LSE     I +K++  Q   SFK RGA   +  LS +QK +GVI+AS GNHAQ +
Sbjct: 21  QKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARGVIAASAGNHAQGV 80

Query: 84  CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143
            +  +RL +   +VMP   P +K+ A R +G  V++ GA+  +AK  A++   E GLT+I
Sbjct: 81  AFSAARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGANFDDAKAKAIELSQEKGLTFI 140

Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVAN-IDAIVVPVGGGGLIAGVAYDHPDI 202
           +           +D P ++AGQGT+ LEI+ QVAN +DA+ VPVGGGGL AGVA      
Sbjct: 141 H----------PFDDPLVIAGQGTLALEILRQVANPLDAVFVPVGGGGLAAGVA-----A 185

Query: 203 MAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAA 262
           +  Q    ++++  GVE         A+  G+P  +      ADG+AV  VG   F    
Sbjct: 186 LIKQLMPEIKVI--GVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFRLCQ 243

Query: 263 PLIDKM 268
             +D +
Sbjct: 244 QYLDDI 249

This model describes a form of threonine ammonia-lyase, a pyridoxal-phosphate dependent enzyme, with two copies of the threonine dehydratase C-terminal domain (pfam00585). Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine. Alternate name: threonine deaminase, threonine dehydratase. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain [Amino acid biosynthesis, Pyruvate family]. Length = 499

>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions

 Score =  165 bits (420), Expect = 2e-50
 Identities = 68/184 (36%), Positives = 100/184 (54%), Gaps = 19/184 (10%)

Query: 28  HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKG--VISASLGNHAQAMCY 85
            LS+L    I+LK +F   TGSFK+RGA   +L+  E+ K     +I ++ GN   A+  
Sbjct: 8   RLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTGGNTGIALAA 67

Query: 86  HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAEL-GLTYIN 144
             +RL +  T+VMP  A   K+   R  GA V++   D  +A  +A +   E  G  Y+N
Sbjct: 68  AAARLGLKCTIVMPEGASPEKVAQMRALGAEVVLVPGDFDDAIALAKELAEEDPGAYYVN 127

Query: 145 GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA--NIDAIVVPVGGGGLIAGVAY----D 198
                      +D+P  +AGQGT+GLEI++Q+     DA+VVPVGGGG IAG+A      
Sbjct: 128 ----------QFDNPANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKEL 177

Query: 199 HPDI 202
            P++
Sbjct: 178 LPNV 181

This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehyd catalyzes the conversion of L- or D-serine to pyruvate and ammonia. Thr-dehyd is active as a homodimer and catalyzes the conversion of L-threonine to 2-oxobutanoate and ammonia. DAL is also a homodimer and catalyzes the alpha, beta-elimination reaction of both L- and D-alpha, beta-diaminopropionate to form pyruvate and ammonia. Thr-synth catalyzes the formation of threonine and inorganic phosphate from O-phosphohomoserine. Length = 244

>gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional

 Score =  166 bits (421), Expect = 8e-50
 Identities = 85/221 (38%), Positives = 123/221 (55%), Gaps = 17/221 (7%)

Query: 29  LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
           LS+ T  E++LK +  Q TGSFK RGA   L +L+E Q+++GVI+AS GNH Q +     
Sbjct: 29  LSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQRQQGVITASSGNHGQGVALAAK 88

Query: 89  RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
              IPVTV  P  A  +K+ A R  GA V + G D   A+  A +   + G  YI+    
Sbjct: 89  LAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGDALNAELAARRAAEQQGKVYIS---- 144

Query: 149 SGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGT 208
                  Y+ P ++AGQGT+G+E+V+Q  ++DA+ V VGGGGLI+G+A     +      
Sbjct: 145 ------PYNDPQVIAGQGTIGMELVEQQPDLDAVFVAVGGGGLISGIATYLKTLSP---- 194

Query: 209 VGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLA 249
              EI+  G       S  T+++ G+   V+ QPTL+DG A
Sbjct: 195 -KTEII--GCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTA 232

Length = 317

>gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional

 Score =  167 bits (424), Expect = 2e-49
 Identities = 83/228 (36%), Positives = 129/228 (56%), Gaps = 25/228 (10%)

Query: 27  SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYH 86
             LS+++  E++LKK+  Q+TG++K RGA   +  LSE+QK+ GVI+AS GNHAQ +   
Sbjct: 27  PFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQKQHGVIAASAGNHAQGVAIS 86

Query: 87  GSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGY 146
             +  I   +VMP   P++K+   +  GA VI++G +  EA   AL+   E  LT+I   
Sbjct: 87  AKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGDNYDEAYAFALEYAKENNLTFI--- 143

Query: 147 LSSGLSVLGYDHP----DIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDI 202
                      HP    ++MAGQGT+ LE++D+++++D +VVPVGGGGLI+G+A      
Sbjct: 144 -----------HPFEDEEVMAGQGTIALEMLDEISDLDMVVVPVGGGGLISGIA-----S 187

Query: 203 MAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAV 250
            A Q    ++I+  GV +    +   +    K        T+ADG+AV
Sbjct: 188 AAKQINPNIKII--GVGAKGAPAMYESFHAKKIINSKSVRTIADGIAV 233

Length = 403

>gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated

 Score =  161 bits (409), Expect = 6e-47
 Identities = 84/251 (33%), Positives = 124/251 (49%), Gaps = 31/251 (12%)

Query: 28  HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHG 87
           +LSE     ++LK++  Q   S+K RGA  A+  LS+++   GV+ AS GNHAQ + Y  
Sbjct: 33  YLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEELAAGVVCASAGNHAQGVAYAC 92

Query: 88  SRLNIPVTVVMPIVAPIMKIQACRRYGA---TVIVEGADMKEAKNIALKKGAELGLTYIN 144
             L IP  + MP+  P  KI   R +G     +++ G    ++   A +   E G T+I 
Sbjct: 93  RHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEETGATFIP 152

Query: 145 GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV---ANIDAIVVPVGGGGLIAGV----AY 197
                      +D PD++AGQGTV +EI++Q+    + D + VPVGGGGLI+GV      
Sbjct: 153 ----------PFDDPDVIAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKE 202

Query: 198 DHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNA 257
             P           +I+  GVE    AS   A++ GKP  +       DG AV  VG   
Sbjct: 203 RSPKT---------KII--GVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVARVGDLT 251

Query: 258 FETAAPLIDKM 268
           FE    ++D +
Sbjct: 252 FEILKDVVDDV 262

Length = 420

>gnl|CDD|237111 PRK12483, PRK12483, threonine dehydratase; Reviewed

 Score =  162 bits (412), Expect = 1e-46
 Identities = 88/239 (36%), Positives = 122/239 (51%), Gaps = 18/239 (7%)

Query: 29  LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
           LS     ++ LK++  Q   SFK RGA   +  L  +Q  +GVI+AS GNHAQ +    +
Sbjct: 46  LSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVITASAGNHAQGVALAAA 105

Query: 89  RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
           RL +   +VMP   P +K+   R +G  V++ G    +A   ALK   E GLT++     
Sbjct: 106 RLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGESFPDALAHALKLAEEEGLTFVP---- 161

Query: 149 SGLSVLGYDHPDIMAGQGTVGLEIVDQ-VANIDAIVVPVGGGGLIAGVAYDHPDIMAGQG 207
                  +D PD++AGQGTV +EI+ Q    +DAI VPVGGGGLIAG+A       A   
Sbjct: 162 ------PFDDPDVIAGQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIA-------AYVK 208

Query: 208 TVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLID 266
            V  EI   GVE D       A+  G+   +      ADG+AV  +G + FE     +D
Sbjct: 209 YVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFELCRHYVD 267

Length = 521

>gnl|CDD|236025 PRK07476, eutB, threonine dehydratase; Provisional

 Score =  158 bits (401), Expect = 1e-46
 Identities = 78/220 (35%), Positives = 117/220 (53%), Gaps = 17/220 (7%)

Query: 29  LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
           LS    + ++LK +  Q TGSFK RGA  ALL LS  ++ +GV++AS GNH +A+ Y   
Sbjct: 28  LSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQERARGVVTASTGNHGRALAYAAR 87

Query: 89  RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
            L I  T+ M  + P  K+ A R  GA V + G    +A+    +   E GLT +     
Sbjct: 88  ALGIRATICMSRLVPANKVDAIRALGAEVRIVGRSQDDAQAEVERLVREEGLTMVP---- 143

Query: 149 SGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGT 208
                  +D P I+AGQGT+GLEI++ + ++  ++VP+ GGGL +GVA     I      
Sbjct: 144 ------PFDDPRIIAGQGTIGLEILEALPDVATVLVPLSGGGLASGVAAAVKAIRPAIRV 197

Query: 209 VGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGL 248
           +G+ +       +R A+   ++  G+P  V   PTLAD L
Sbjct: 198 IGVSM-------ERGAAMHASLAAGRPVQVEEVPTLADSL 230

Length = 322

>gnl|CDD|235918 PRK07048, PRK07048, serine/threonine dehydratase; Validated

 Score =  155 bits (393), Expect = 2e-45
 Identities = 84/245 (34%), Positives = 121/245 (49%), Gaps = 25/245 (10%)

Query: 29  LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
               T  ++F K + FQ  G+FK RGA  AL   S +Q++ GV++ S GNHAQA+     
Sbjct: 33  ADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQRRAGVVTFSSGNHAQAIALSAR 92

Query: 89  RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
            L IP T+VMP  AP  K+ A R YG  V+      ++ + I  +   E GLT I     
Sbjct: 93  LLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDRYTEDREEIGRRLAEERGLTLIP---- 148

Query: 149 SGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGT 208
                  YDHP ++AGQGT   E+ ++V  +DA+ V +GGGGL++G A     + A   +
Sbjct: 149 ------PYDHPHVIAGQGTAAKELFEEVGPLDALFVCLGGGGLLSGCA-----LAARALS 197

Query: 209 VGLEIVDQGVE----SDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPL 264
            G ++   GVE    +D   SF +       TP     T+ADG     +G   F     L
Sbjct: 198 PGCKVY--GVEPEAGNDGQQSFRSGEIVHIDTP----RTIADGAQTQHLGNYTFPIIRRL 251

Query: 265 IDKMF 269
           +D + 
Sbjct: 252 VDDIV 256

Length = 321

>gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional

 Score =  151 bits (383), Expect = 3e-44
 Identities = 82/226 (36%), Positives = 112/226 (49%), Gaps = 22/226 (9%)

Query: 36  EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT 95
            ++LK +  Q TGSFK RGA   LL  +      GV++AS GN   A+ Y  + L +P T
Sbjct: 38  PVWLKLEHLQHTGSFKARGAFNRLL--AAPVPAAGVVAASGGNAGLAVAYAAAALGVPAT 95

Query: 96  VVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLG 155
           V +P  AP  K+   R  GA V+V GA+  +A   A    AE G    + Y         
Sbjct: 96  VFVPETAPPAKVARLRALGAEVVVVGAEYADALEAAQAFAAETGALLCHAY--------- 146

Query: 156 YDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVD 215
            D P+++AG GT+GLEI +Q   +D ++V VGGGGLIAG+A         +G     +V 
Sbjct: 147 -DQPEVLAGAGTLGLEIEEQAPGVDTVLVAVGGGGLIAGIA------AWFEGRA--RVV- 196

Query: 216 QGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETA 261
             VE +   +   A+  G+P  V V    AD L    VG  AF  A
Sbjct: 197 -AVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGEIAFALA 241

Length = 310

>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase

 Score =  155 bits (394), Expect = 1e-43
 Identities = 91/239 (38%), Positives = 126/239 (52%), Gaps = 18/239 (7%)

Query: 29  LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
           LSE   +++ LK++  Q   SFK RGA   +  L ++Q  KGVI +S GNHAQ +     
Sbjct: 118 LSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVICSSAGNHAQGVALSAQ 177

Query: 89  RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
           RL     + MP+  P +K Q+  R GATV++ G    EA+  A ++  E G T+I     
Sbjct: 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGDSYDEAQAYAKQRALEEGRTFIP---- 233

Query: 149 SGLSVLGYDHPDIMAGQGTVGLEIVDQV-ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQG 207
                  +DHPD++AGQGTVG+EIV Q    + AI VPVGGGGLIAG+A       A   
Sbjct: 234 ------PFDHPDVIAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIA-------AYVK 280

Query: 208 TVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLID 266
            V  E+   GVE     + + ++ HG+   +      ADG+AV  VG   F     L+D
Sbjct: 281 RVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRLCRELVD 339

Length = 591

>gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase

 Score =  151 bits (383), Expect = 2e-43
 Identities = 82/248 (33%), Positives = 115/248 (46%), Gaps = 21/248 (8%)

Query: 25  KKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMC 84
               LSE     I+LK++  Q   S+K RGA   L  LS+ Q  KGV+ AS GNHAQ   
Sbjct: 21  LNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQLAKGVVCASAGNHAQGFA 80

Query: 85  YHGSRLNIPVTVVMPIVAPIMKIQACRRYGAT---VIVEGADMKEAKNIALKKGAELGLT 141
           Y    L +  TV MP   P  KI   + +G     +I+ G    +    A +   + G T
Sbjct: 81  YACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVGDTFDQCAAAAREHVEDHGGT 140

Query: 142 YINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVAN-IDAIVVPVGGGGLIAGVAYDHP 200
           +I            +D P I+ GQGTV  EI+DQ+    D +VVPVGGGGLI+G+     
Sbjct: 141 FIP----------PFDDPRIIEGQGTVAAEILDQLPEKPDYVVVPVGGGGLISGLT---- 186

Query: 201 DIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFET 260
             +AG       I   GVE +   S   +++ G+   +       DG AV  VG   F+ 
Sbjct: 187 TYLAGTSPKTKII---GVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKRVGDLNFKA 243

Query: 261 AAPLIDKM 268
              + D++
Sbjct: 244 LKDVPDEV 251

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been charcterized (TIGR01124 and TIGR01127). Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway [Amino acid biosynthesis, Pyruvate family]. Length = 409

>gnl|CDD|180550 PRK06382, PRK06382, threonine dehydratase; Provisional

 Score =  150 bits (380), Expect = 6e-43
 Identities = 86/253 (33%), Positives = 132/253 (52%), Gaps = 19/253 (7%)

Query: 14  GFVIRDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVIS 73
           G++ R    +S      +    +I+ K + FQ TGSFK RGA +    LSED+ + GVI+
Sbjct: 21  GYLNRTPLIHSTT--FGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDELRNGVIT 78

Query: 74  ASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALK 133
           AS GNHAQ + Y  S   I   +VMP      K+ A   YGA VI+ G D  EA   A K
Sbjct: 79  ASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGRDYDEAHRYADK 138

Query: 134 KGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIA 193
              +   T+I            ++   +++GQGT+GLEI++ + ++D I+VPVGGGGLI+
Sbjct: 139 IAMDENRTFIE----------AFNDRWVISGQGTIGLEIMEDLPDLDQIIVPVGGGGLIS 188

Query: 194 GVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLV 253
           G+A       A      ++I+  G+ES+   S   +++ GK    +   ++ DG++V   
Sbjct: 189 GIAL-----AAKHINPNVKII--GIESELSDSMKASLREGKIVAHTSGVSICDGISVKYP 241

Query: 254 GWNAFETAAPLID 266
           G   F+ A   +D
Sbjct: 242 GDLTFDIAKNYVD 254

Length = 406

>gnl|CDD|215524 PLN02970, PLN02970, serine racemase

 Score =  145 bits (367), Expect = 1e-41
 Identities = 63/170 (37%), Positives = 94/170 (55%), Gaps = 10/170 (5%)

Query: 27  SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYH 86
           S L  L    +F K + FQ  G+FK RGAC A+  LS+DQ +KGV++ S GNHA A+   
Sbjct: 34  SSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQAEKGVVTHSSGNHAAALALA 93

Query: 87  GSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGY 146
                IP  +V+P  AP  K+ A  RYG  +      ++  + +A +   E G   I+  
Sbjct: 94  AKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEPTVESREAVAARVQQETGAVLIH-- 151

Query: 147 LSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVA 196
                    Y+   +++GQGT+ LE ++QV  +D I+VP+ GGGLI+G+A
Sbjct: 152 --------PYNDGRVISGQGTIALEFLEQVPELDVIIVPISGGGLISGIA 193

Length = 328

>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme

 Score =  144 bits (365), Expect = 1e-41
 Identities = 75/239 (31%), Positives = 119/239 (49%), Gaps = 28/239 (11%)

Query: 36  EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT 95
            ++LK +    TGSFK+RGA Y LL     ++   V+ AS GN  +A+    +RL + VT
Sbjct: 21  RVYLKLESLNPTGSFKDRGAAYLLL--RALERGATVVEASSGNTGRALAAAAARLGLKVT 78

Query: 96  VVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLG 155
           +V+P  A   K+   R  GA VI+  ++          + AE     +  Y    + +  
Sbjct: 79  IVVPEGASPGKLLLMRALGAEVILVVSEGDYD---DALELAEEAAELLAAYD-GPIPLGQ 134

Query: 156 YDHPDIMAGQGTVGLEIVDQVA--NIDAIVVPVGGGGLIAGVA----YDHPDIMAGQGTV 209
           Y++P+++AG  T+GLEI++Q+   + DA+VVPVGGGGL AG+A       P I       
Sbjct: 135 YNNPNVIAGYKTIGLEILEQLGQGDPDAVVVPVGGGGLAAGIARGLKELGPGI------- 187

Query: 210 GLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLIDKM 268
              ++  GVE +   + + +++ G+  P    PT   GL   +      E A  LID+ 
Sbjct: 188 --RVI--GVEPEGAPALARSLEAGRRVPK---PTTIAGLGPGIP--LDGELALELIDEY 237

Members of this family are all pyridoxal-phosphate dependent enzymes. This family includes: serine dehydratase EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16, tryptophan synthase beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8 P11096, cystathionine beta-synthase EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4. Length = 295

>gnl|CDD|132036 TIGR02991, ectoine_eutB, ectoine utilization protein EutB

 Score =  142 bits (360), Expect = 9e-41
 Identities = 83/223 (37%), Positives = 126/223 (56%), Gaps = 19/223 (8%)

Query: 27  SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYH 86
             LSEL  + + LK +  Q TGSFK RGA  A+L LS+ Q+  GV++AS GNH +A+ Y 
Sbjct: 26  PSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQRAAGVVAASTGNHGRALAYA 85

Query: 87  GSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGY 146
            +   +  T+ M  + P  K+   RR GA V + G    +A+    +  A+ GLT +   
Sbjct: 86  AAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGRSQDDAQEEVERLVADRGLTMLP-- 143

Query: 147 LSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQ 206
                    +DHPDI+AGQGT+GLE+V+Q+ ++  ++VP+ GGGL +GVA      MA +
Sbjct: 144 --------PFDHPDIVAGQGTLGLEVVEQMPDLATVLVPLSGGGLASGVA------MAVK 189

Query: 207 G-TVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGL 248
                  ++  GV  +R A+   +++ G+P  V+  PTLAD L
Sbjct: 190 AARPDTRVI--GVSMERGAAMKASLQAGRPVLVAELPTLADSL 230

Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases. Length = 317

>gnl|CDD|235842 PRK06608, PRK06608, threonine dehydratase; Provisional

 Score =  122 bits (307), Expect = 9e-33
 Identities = 72/236 (30%), Positives = 105/236 (44%), Gaps = 22/236 (9%)

Query: 27  SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKK-KGVISASLGNHAQAMCY 85
             L+E+   EIF K +  Q TG+FK RG    LL L E  K    +++ S GNH QA+ Y
Sbjct: 30  ESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLPDKIVAYSTGNHGQAVAY 89

Query: 86  HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYING 145
                 I   + +P+    +K QA   YG  VI+     +EA+    K+  E G  YI+ 
Sbjct: 90  ASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILT-NTRQEAEE-KAKEDEEQGFYYIH- 146

Query: 146 YLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMA 204
                      D    +AG GT+  E + Q+  + DAI    GGGGLI+G        +A
Sbjct: 147 ---------PSDSDSTIAGAGTLCYEALQQLGFSPDAIFASCGGGGLISGT------YLA 191

Query: 205 GQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQP-TLADGLAVPLVGWNAFE 259
            +      ++  G E         ++K+ K   ++  P T+ADGL    V    FE
Sbjct: 192 KELISPTSLL-IGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSVSARTFE 246

Length = 338

>gnl|CDD|236339 PRK08813, PRK08813, threonine dehydratase; Provisional

 Score =  117 bits (295), Expect = 5e-31
 Identities = 87/234 (37%), Positives = 122/234 (52%), Gaps = 30/234 (12%)

Query: 37  IFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV 96
           ++LK +  Q TGS+K RGA  ALL   E   ++ VI AS GNHAQ + +   RL +    
Sbjct: 50  VWLKLENLQRTGSYKVRGALNALLAGLERGDERPVICASAGNHAQGVAWSAYRLGVQAIT 109

Query: 97  VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGY--LSSGLSVL 154
           VMP  AP  KI     +GATV   G    EA   A +      L   NGY  LS+     
Sbjct: 110 VMPHGAPQTKIAGVAHWGATVRQHGNSYDEAYAFARE------LADQNGYRFLSA----- 158

Query: 155 GYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGT--VGLE 212
            +D PD++AGQGTVG+E+       D ++VP+GGGGL +GVA      +  QG   VG +
Sbjct: 159 -FDDPDVIAGQGTVGIELAAHAP--DVVIVPIGGGGLASGVAL----ALKSQGVRVVGAQ 211

Query: 213 IVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLID 266
           +  +GV+     S + AI+ G    ++   TLADG+ V + G+      + L+D
Sbjct: 212 V--EGVD-----SMARAIR-GDLREIAPVATLADGVKVKIPGFLTRRLCSSLLD 257

Length = 349

>gnl|CDD|107209 cd06448, L-Ser-dehyd, Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia

 Score =  116 bits (293), Expect = 6e-31
 Identities = 69/242 (28%), Positives = 108/242 (44%), Gaps = 27/242 (11%)

Query: 29  LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKK--GVISASLGNHAQAMCYH 86
           LS+     +FLK +  Q +GSFK RG  +     ++    +   V+ +S GN   A  Y 
Sbjct: 10  LSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGLNECVHVVCSSGGNAGLAAAYA 69

Query: 87  GSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKK---GAELGLTYI 143
             +L +P T+V+P       ++  R  GATV+V G    EA N  L++     + G  Y+
Sbjct: 70  ARKLGVPCTIVVPESTKPRVVEKLRDEGATVVVHGKVWWEADN-YLREELAENDPGPVYV 128

Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVAN---IDAIVVPVGGGGLIAGVAYDHP 200
           +           +D P I  G  ++  EI  Q+ +   +DAIV  VGGGGL+ G      
Sbjct: 129 H----------PFDDPLIWEGHSSMVDEIAQQLQSQEKVDAIVCSVGGGGLLNG------ 172

Query: 201 DIMAGQGTVGLEIVD-QGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFE 259
            I+ G    G   +    VE++   S + ++K GK   +    ++A  L    V   A E
Sbjct: 173 -IVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALE 231

Query: 260 TA 261
            A
Sbjct: 232 YA 233

Length = 316

>gnl|CDD|235699 PRK06110, PRK06110, hypothetical protein; Provisional

 Score = 99.7 bits (249), Expect = 2e-24
 Identities = 71/234 (30%), Positives = 110/234 (47%), Gaps = 23/234 (9%)

Query: 29  LSELTKMEIFLKKDFFQVTGSFKERGA-CYALLMLSEDQKKKGVISASLGNHAQAMCYHG 87
           L+E    E+++K +    TG+FK RG   Y   +     + +GVISA+ GNH Q++ +  
Sbjct: 30  LAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRVRGVISATRGNHGQSVAFAA 89

Query: 88  SRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYL 147
            R  +  T+V+P    + K  A R  GA +I  G D + A+  A +  AE GL  +  + 
Sbjct: 90  RRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGEDFQAAREEAARLAAERGLHMVPSF- 148

Query: 148 SSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQG 207
                     HPD++ G  T  LE+   V ++D + VP+G G  I G         A + 
Sbjct: 149 ----------HPDLVRGVATYALELFRAVPDLDVVYVPIGMGSGICGAI-------AARD 191

Query: 208 TVGL--EIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFE 259
            +GL   IV  GV S    +++ + + G+     V  TLADG+A       A E
Sbjct: 192 ALGLKTRIV--GVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDPEALE 243

Length = 322

>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate

 Score = 98.4 bits (246), Expect = 4e-24
 Identities = 65/227 (28%), Positives = 101/227 (44%), Gaps = 31/227 (13%)

Query: 36  EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT 95
            +++K +    TGSFK+RG   A+    E    K V  AS GN + ++  + +R  I   
Sbjct: 39  NLYVKDEGLNPTGSFKDRGMTVAVSKAKE-LGVKAVACASTGNTSASLAAYAARAGIKCV 97

Query: 96  VVMPIVAPIMKIQACRRYGATVI-VEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVL 154
           V +P    + K+     YGATV+ VEG +  +A  +  +   E        YLS+     
Sbjct: 98  VFLPAGKALGKLAQALAYGATVLAVEG-NFDDALRLVRELAEENW-----IYLSN----- 146

Query: 155 GYDHPDIMAGQGTVGLEIVDQVANI--DAIVVPVGGGGLIAGVAYDHPDIMAG-QGTVGL 211
              +P  + GQ T+  EI +Q+     D +VVPVG GG I         I  G +    L
Sbjct: 147 -SLNPYRLEGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITA-------IWKGFKELKEL 198

Query: 212 EIVDQ-----GVESDRCASFSTAIKHGK--PTPVSVQPTLADGLAVP 251
            ++D+     GV+++  A    A K GK    PV    T+A  + + 
Sbjct: 199 GLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIRIG 245

It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants. Length = 324

>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and metabolism]

 Score = 77.0 bits (190), Expect = 5e-16
 Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 41/234 (17%)

Query: 32  LTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLN 91
           +    +++K+     TGSFK+RG    + +  E    K ++ AS GN   +   + +R  
Sbjct: 91  VLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKEL-GAKTILCASSGNTGASAAAYAARAG 149

Query: 92  IPVTVVMP--IVAPIMKIQACRRYGATVI-VEGADMKEAKNIALKKGAELGLTYINGYLS 148
           + V V+ P   V+P    Q     GA VI V+G +  +A+ +  K+ A        G LS
Sbjct: 150 LKVFVLYPKGKVSPGKLAQML-TLGAHVIAVDG-NFDDAQELV-KEAANR-----EGLLS 201

Query: 149 SGLSVLGYDHPDIMAGQGTVGLEIVDQVANI--DAIVVPVGGGGLIAGV--AYDHPDIMA 204
           +  S+    +P  + GQ T   EI +Q+     D +VVPVG GG +  +   +       
Sbjct: 202 AVNSI----NPYRLEGQKTYAFEIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKE----- 252

Query: 205 GQGTVGLEI-------VDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVP 251
                GL I          GV+++  +    A K G+ TP     T+A  + + 
Sbjct: 253 -----GLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPE----TIAPAMDIG 297

Length = 411

>gnl|CDD|236244 PRK08329, PRK08329, threonine synthase; Validated

 Score = 74.9 bits (184), Expect = 2e-15
 Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 13/161 (8%)

Query: 36  EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT 95
           +++ K D+ Q TGSFK+RG    +  L E+   + VI +S GN A ++  +     I V 
Sbjct: 73  KVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGINEVVIDSS-GNAALSLALYSLSEGIKVH 131

Query: 96  VVMPIVAPIMKIQACRRYGATV-IVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVL 154
           V +   A   KI    R GA +  VEG  M+  +  A+K      + Y++ +L+      
Sbjct: 132 VFVSYNASKEKISLLSRLGAELHFVEGDRMEVHEE-AVKFSKRNNIPYVSHWLN------ 184

Query: 155 GYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGV 195
               P  + G  T+  EI +Q+   D   VPVG G L  G+
Sbjct: 185 ----PYFLEGTKTIAYEIYEQIGVPDYAFVPVGSGTLFLGI 221

Length = 347

>gnl|CDD|235539 PRK05638, PRK05638, threonine synthase; Validated

 Score = 71.4 bits (175), Expect = 3e-14
 Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 34/234 (14%)

Query: 26  KSHLSELTKMEIFLKKDFFQVTGSFKERGAC----YALLMLSEDQKKKGVISASLGNHAQ 81
           ++ +SE     +++K +    TGSF++R A     Y L          G I AS GN A 
Sbjct: 71  RARISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGL-----PYAANGFIVASDGNAAA 125

Query: 82  AMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLT 141
           ++  + +R      VV+P      K+     +GA +I  G  + EA   A +     GL 
Sbjct: 126 SVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGESVDEAIEYAEELARLNGLY 185

Query: 142 YINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPD 201
            +    +   +++G      + GQ T+  E+ +++ N   ++VP G G  +  +     +
Sbjct: 186 NV----TPEYNIIG------LEGQKTIAFELWEEI-NPTHVIVPTGSGSYLYSIYKGFKE 234

Query: 202 IMAGQGTVGLEIVDQ-----GVESDRCASFSTAIKHGKPTPVSVQPTLADGLAV 250
           ++     +G  ++++      V+++RC   ++ I  G  T      T A GL V
Sbjct: 235 LL----EIG--VIEEIPKLIAVQTERCNPIASEI-LGNKT--KCNETKALGLYV 279

Length = 442

>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase

 Score = 68.3 bits (168), Expect = 2e-13
 Identities = 54/179 (30%), Positives = 76/179 (42%), Gaps = 20/179 (11%)

Query: 28  HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKG-------VISASLGNHA 80
            LS  T  EI+ K +FF   GS K+R A Y +    ED +K+G       +I  + GN  
Sbjct: 10  RLSPGTGAEIYAKLEFFNPGGSVKDRIALYMI----EDAEKRGLLKPGTTIIEPTSGNTG 65

Query: 81  QAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVI-VEGADMKEAKNIALKKGAELG 139
             +    +       +VMP      K +  R  GA VI    A+    K  A+ K  EL 
Sbjct: 66  IGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKG-AIAKARELA 124

Query: 140 LTYINGYLSSGLSVLGYDHPD-IMAGQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVA 196
               N +  +      +++P    A   T   EI +Q+   +DA V  VG GG I GVA
Sbjct: 125 AETPNAFWLN-----QFENPANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVA 178

CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine. Length = 291

>gnl|CDD|181283 PRK08197, PRK08197, threonine synthase; Validated

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 14/160 (8%)

Query: 36  EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT 95
            +++K +    TGSFK RG    +    E    K +   + GN   A   + +R  I  T
Sbjct: 96  RLWVKDEGLNPTGSFKARGLAVGVSRAKE-LGVKHLAMPTNGNAGAAWAAYAARAGIRAT 154

Query: 96  VVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLG 155
           + MP  AP +    C   GA + +    + +A  I  +  AE G      +  S L    
Sbjct: 155 IFMPADAPEITRLECALAGAELYLVDGLISDAGKIVAEAVAEYGW-----FDVSTLK--- 206

Query: 156 YDHPDIMAGQGTVGLEIVDQVA--NIDAIVVPVGGG-GLI 192
              P  + G+ T+GLE+ +Q+     D I+ P GGG GLI
Sbjct: 207 --EPYRIEGKKTMGLELAEQLGWRLPDVILYPTGGGVGLI 244

Length = 394

>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism]

 Score = 61.0 bits (149), Expect = 6e-11
 Identities = 52/187 (27%), Positives = 77/187 (41%), Gaps = 20/187 (10%)

Query: 28  HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK-KKG--VISASLGNHAQAMC 84
            LS  T +EI+ K + F   GS K+R A Y +    +    K G  ++ A+ GN   A+ 
Sbjct: 19  RLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALA 78

Query: 85  YHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVI-VEGAD--MKEAKNIALKKGAELGLT 141
              +     + +VMP      + +  R  GA VI   GA   MK A   A +  AE+   
Sbjct: 79  MVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGY 138

Query: 142 YIN-GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVA--- 196
            +      +  +   +          T G EI  Q    +DA V  VG GG I GVA   
Sbjct: 139 AVWLNQFENPANPEAHYE--------TTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYL 190

Query: 197 -YDHPDI 202
              +P++
Sbjct: 191 KERNPNV 197

Length = 300

>gnl|CDD|235757 PRK06260, PRK06260, threonine synthase; Validated

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 25/157 (15%)

Query: 47  TGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPI--VAPI 104
           TGSFK+RG    +    E   K  V  AS GN + ++  + +R  +   V++P   VA +
Sbjct: 95  TGSFKDRGMTVGVTKALELGVKT-VACASTGNTSASLAAYAARAGLKCYVLLPAGKVA-L 152

Query: 105 MKIQACRRYGATVI-VEG---ADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPD 160
            K+     +GA V+ V+G     +     +A +    L L  IN              P 
Sbjct: 153 GKLAQALLHGAKVLEVDGNFDDALDMVVELAKEGKIYL-LNSIN--------------PF 197

Query: 161 IMAGQGTVGLEIVDQVANI--DAIVVPVGGGGLIAGV 195
            + GQ T+G EI DQ+     D +V+PVG  G I+ +
Sbjct: 198 RLEGQKTIGFEIADQLGWEVPDRVVLPVGNAGNISAI 234

Length = 397

>gnl|CDD|232896 TIGR00260, thrC, threonine synthase

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 53/234 (22%), Positives = 94/234 (40%), Gaps = 34/234 (14%)

Query: 30  SELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSR 89
           + +    +++ + F   T SFK+RG   AL    E      V+ AS GN   A   +  +
Sbjct: 34  ANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALEL-GNDTVLCASTGNTGAAAAAYAGK 92

Query: 90  LNIPVTVVMP--IVAPIMKIQACRRYGATVIVEGADMKEAKNI---ALKKGAELGLTYIN 144
             + V ++ P   ++     QA   Y A V+    +  +A+ +          LGL  +N
Sbjct: 93  AGVKVVILYPAGKISLGKLAQAL-GYNAEVVAIDGNFDDAQRLVKQLFGDKEALGLNSVN 151

Query: 145 GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANI--DAIVVPVGGGGLIAGVAYDHPDI 202
                  S+        + GQ T   E V+Q+     D +VVPV   G           I
Sbjct: 152 -------SIPYR-----LEGQKTYAFEAVEQLGWEAPDKVVVPVPNSGNFG-------AI 192

Query: 203 MAG---QGTVGLEI--VDQGVESDRCASFSTA-IKHGKPTPVSVQPTLADGLAV 250
           + G   +   GL+   V +G++++  A    A ++ G+  P+    TL+  + +
Sbjct: 193 LKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAIDI 246

Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model [Amino acid biosynthesis, Aspartate family]. Length = 328

>gnl|CDD|180539 PRK06352, PRK06352, threonine synthase; Validated

 Score = 53.9 bits (129), Expect = 2e-08
 Identities = 56/220 (25%), Positives = 95/220 (43%), Gaps = 24/220 (10%)

Query: 28  HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHG 87
           +LS+   + ++ K +    TGSFK+RG   A+    E +  + VI AS GN + A   + 
Sbjct: 36  NLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKE-EGAEAVICASTGNTSAAAAAYA 94

Query: 88  SRLNIPVTVVMPI-VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGY 146
           +R  +   +V+P     + K+     YGA +I    +  E    ALK   EL  T     
Sbjct: 95  TRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQGNFDE----ALKSVRELAET----- 145

Query: 147 LSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANI-DAIVVPVGGGGLIAGVAYDHPDIMAG 205
               ++++   +P  + GQ T   EI +Q+ +  D + +PVG  G I+       +    
Sbjct: 146 --EAVTLVNSVNPYRLEGQKTAAFEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEA 203

Query: 206 QGTV----------GLEIVDQGVESDRCASFSTAIKHGKP 235
           + +           G   + QG   D   + +TAI+ G P
Sbjct: 204 KASGLPRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGNP 243

Length = 351

>gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed

 Score = 52.8 bits (126), Expect = 5e-08
 Identities = 57/222 (25%), Positives = 93/222 (41%), Gaps = 28/222 (12%)

Query: 28  HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHG 87
           ++S+   ++++ K +    TGSFK+RG   A+    E +  + +I AS GN + +   + 
Sbjct: 36  NISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKE-EGSEAIICASTGNTSASAAAYA 94

Query: 88  SRLNIPVTVVMPIVAPIM--KIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYING 145
           +RL +   +V+P    I   K+     YGA +I    +  +A        AE  +T +N 
Sbjct: 95  ARLGMKCIIVIP-EGKIAHGKLAQAVAYGAEIISIEGNFDDALKAVRNIAAEEPITLVNS 153

Query: 146 YLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANI-DAIVVPVGGGGLIAGV--------- 195
                       +P  + GQ T   EI DQ+    D + +PVG  G I            
Sbjct: 154 V-----------NPYRIEGQKTAAFEICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEK 202

Query: 196 --AYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKP 235
              Y  P I   +      IV +G   D   + +TAI+ G P
Sbjct: 203 EKGYKKPRIHGFEAEGAAAIV-KGHVIDEPETIATAIRIGNP 243

Length = 352

>gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 50/192 (26%), Positives = 69/192 (35%), Gaps = 41/192 (21%)

Query: 28  HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKG-------VISASLGNHA 80
             SE T  EI  K +F    GS K+R A    L +  D +K+G       ++  + GN  
Sbjct: 21  RASEATGCEILGKAEFLNPGGSVKDRAA----LNIIWDAEKRGLLKPGGTIVEGTAGNTG 76

Query: 81  QAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVI-VEGADMKEAKN---IALKKGA 136
             +    +       +VMP      K    R  GA ++ V  A      N    A +   
Sbjct: 77  IGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAE 136

Query: 137 ELGLTYINGYLSSGLSVLGYDHPDIMAGQ-----------GTVGLEIVDQVA-NIDAIVV 184
           EL  +  NG               I A Q            T G EI +Q    +D  V 
Sbjct: 137 ELVASEPNGA--------------IWANQFDNPANREAHYETTGPEIWEQTDGKVDGFVC 182

Query: 185 PVGGGGLIAGVA 196
            VG GG +AGV+
Sbjct: 183 AVGTGGTLAGVS 194

Length = 330

>gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 18/176 (10%)

Query: 29  LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK--KKG--VISASLGNHAQAMC 84
           L+      +  K +    +GS K+R A  +++  +E +   K G  +I A+ GN   A+ 
Sbjct: 16  LAPGCDARVLAKLEGRNPSGSVKDRIA-LSMIEDAEKRGLLKPGDTIIEATSGNTGIALA 74

Query: 85  YHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVI-VEGAD-MKEAKNIALKKGAELGLTY 142
              +     + + MP    + + +  R YGA +I     + MK A + A +  AE     
Sbjct: 75  MVAAAKGYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETN--- 131

Query: 143 INGYLSSGLSVLGYDHPD-IMAGQGTVGLEIVDQVAN-IDAIVVPVGGGGLIAGVA 196
                   + +  +++P    A   T G EI       ID  V  VG GG I GV 
Sbjct: 132 ------KYVMLDQFENPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVG 181

This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff [Amino acid biosynthesis, Serine family]. Length = 299

>gnl|CDD|236186 PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional

 Score = 49.9 bits (120), Expect = 6e-07
 Identities = 50/247 (20%), Positives = 89/247 (36%), Gaps = 56/247 (22%)

Query: 48  GSFKERGACYALL------------------MLSEDQKKKG----VISASLGNHAQAMCY 85
            +FK  G  YA+                   + S + ++K       +A+ GNH + + +
Sbjct: 74  NAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKLGDITFATATDGNHGRGVAW 133

Query: 86  HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYING 145
              +L     + MP  +   ++ A R  GA  I+   +  ++  +A ++  E G      
Sbjct: 134 AAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDGNYDDSVRLAAQEAQENG-----W 188

Query: 146 YLSSGLSVLGYDHP--DIMAGQGTVGLEIVDQVANIDA----IVVPVGGGGLIAGVA-Y- 197
            +    +  GY+     IM G GT+  E V+Q+  +      + +  G G L   V  Y 
Sbjct: 189 VVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYF 248

Query: 198 -----DHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQ-PTLADGLA-- 249
                +              +V   VE D+      +   GKP  V+    T+  GLA  
Sbjct: 249 AEVYGEQRPHF---------VV---VEPDQADCLYQSAVDGKPVAVTGDMDTIMAGLACG 296

Query: 250 -VPLVGW 255
               + W
Sbjct: 297 EPNPLAW 303

Length = 399

>gnl|CDD|236013 PRK07409, PRK07409, threonine synthase; Validated

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 59/176 (33%), Positives = 89/176 (50%), Gaps = 24/176 (13%)

Query: 28  HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGN-HAQAMCYH 86
           +LSEL  +E+++K +    TGSFK+RG   A+    E+   K VI AS GN  A A  Y 
Sbjct: 39  NLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEE-GAKAVICASTGNTSASAAAY- 96

Query: 87  GSRLNIPVTVVMP--IVAPIMKI-QACRRYGATVI-VEGADMKEAKNIALKKGAELGLTY 142
            +R  +   V++P   +A + K+ QA   YGA +I ++G +  +A  I  +   +  +T 
Sbjct: 97  AARAGLKAFVLIPEGKIA-LGKLAQAV-MYGAEIIQIDG-NFDDALEIVRELAEKYPVTL 153

Query: 143 INGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANI-DAIVVPVGGGGLIAGVAY 197
           +N       SV    +P  + GQ T   EIVD + +  D   +PVG  G I   AY
Sbjct: 154 VN-------SV----NPYRIEGQKTAAFEIVDALGDAPDYHCIPVGNAGNIT--AY 196

Length = 353

>gnl|CDD|180565 PRK06450, PRK06450, threonine synthase; Validated

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 25/166 (15%)

Query: 36  EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT 95
            I+ K DF   TGS+K+RG+   +  L+ ++  K +   S GN   ++  +G+   I V 
Sbjct: 66  NIWFKLDFLNPTGSYKDRGSVTLISYLA-EKGIKQISEDSSGNAGASIAAYGAAAGIEVK 124

Query: 96  VVMPIVAPIMKIQACRRYGATVI-VEGA--DM-KEAKNIALKKGAELGLTYINGYLSSGL 151
           + +P  A   K++    YGA V+ V G+  D+ K A+N              +GY  +  
Sbjct: 125 IFVPETASGGKLKQIESYGAEVVRVRGSREDVAKAAEN--------------SGYYYAS- 169

Query: 152 SVLGYDHPDIMAGQGTVGLEIVDQVAN--IDAIVVPVGGGGLIAGV 195
            VL    P    G  T+  EI   +     + + +PV  G L+ GV
Sbjct: 170 HVL---QPQFRDGIRTLAYEIAKDLDWKIPNYVFIPVSAGTLLLGV 212

Length = 338

>gnl|CDD|178182 PLN02569, PLN02569, threonine synthase

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 32/162 (19%)

Query: 47  TGSFKERGACYALLMLSEDQKKK----GVISASLGNHAQAMCYHGSRLNIPVTVVMP--- 99
           TGSFK+ G    +  ++  +K      GV  AS G+ + A+  + +   IP  V +P   
Sbjct: 162 TGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYCAAAGIPSIVFLPADK 221

Query: 100 -----IVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVL 154
                +V PI         GA V+    D      +  +  AEL       YL++ L+ L
Sbjct: 222 ISIAQLVQPIAN-------GALVLSIDTDFDGCMRLIREVTAEL-----PIYLANSLNSL 269

Query: 155 GYDHPDIMAGQGTVGLEIVDQVA--NIDAIVVPVGGGGLIAG 194
                  + GQ T  +EI+ Q      D ++VP G  G I  
Sbjct: 270 R------LEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYA 305

Length = 484

>gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 17/169 (10%)

Query: 36  EIFLKKDFFQVTGSFKERGACYALLMLSEDQK--KKGV--ISASLGNHAQAMCYHGSRLN 91
            +F+K +    +GS K+R A   ++  +E +   K G   +  + GN   A+    +   
Sbjct: 22  NVFVKLEGRNPSGSVKDRIA-LNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAMVAAARG 80

Query: 92  IPVTVVMPIVAPIMKIQACRRYGATVIV-EGAD-MKEAKNIALKKGAELGLTYINGYLSS 149
             + + MP    I + +  + YGA +++  GA+ MK A    + K  E+  +  N Y   
Sbjct: 81  YKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGA----IAKAEEIAASTPNSYFM- 135

Query: 150 GLSVLGYDHP-DIMAGQGTVGLEIVDQVAN-IDAIVVPVGGGGLIAGVA 196
              +  +++P +    + T G EI       +DA V  VG GG I GV 
Sbjct: 136 ---LQQFENPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVG 181

This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate [Amino acid biosynthesis, Serine family]. Length = 298

>gnl|CDD|235789 PRK06381, PRK06381, threonine synthase; Validated

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 53/236 (22%), Positives = 96/236 (40%), Gaps = 33/236 (13%)

Query: 37  IFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV 96
           I+LK +    TG+ K+R A  A +  +      G+   + GN+  ++ Y      +   +
Sbjct: 33  IYLKFEGANPTGTQKDRIA-EAHVRRAMRLGYSGITVGTCGNYGASIAYFARLYGLKAVI 91

Query: 97  VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGY 156
            +P      +++   +YGA +I      +EA   + K   E G+     Y ++  SV   
Sbjct: 92  FIPRSYSNSRVKEMEKYGAEIIYVDGKYEEAVERSRKFAKENGI-----YDANPGSV--N 144

Query: 157 DHPDIMAGQGTVGLEIVDQVANI-DAIVVPVGGGGLIAGV------AYDH------PDIM 203
              DI A    +  EI + + ++ DA+ VPVG G  +AG+       YD       P ++
Sbjct: 145 SVVDIEA-YSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMI 203

Query: 204 AGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFE 259
               + G +IV+         SF       +   + V       +  PLV + +F+
Sbjct: 204 GVSTSGGNQIVE---------SFKRGSS--EVVDLEVDEIRETAVNEPLVSYRSFD 248

Length = 319

>gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 27/176 (15%)

Query: 33  TKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKK------KGVISASLGNHAQAMCYH 86
              E++LK +     GS K+R A   L M+ E +K+        +I A+ GN   A+   
Sbjct: 21  NGSEVWLKLEGNNPAGSVKDRPA---LSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMI 77

Query: 87  GSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV----EGADMKEAKNIALKKGAELGLTY 142
            +     + ++MP      +  A R YGA +I+    EG  M+ A+++AL    EL    
Sbjct: 78  AALKGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEG--MEGARDLAL----ELANRG 131

Query: 143 INGYLSSGLSVLGYDHPD-IMAGQGTVGLEIVDQV-ANIDAIVVPVGGGGLIAGVA 196
               L        +++PD   A   + G EI  Q    I   V  +G  G I GV+
Sbjct: 132 EGKLLDQ------FNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVS 181

CysM differs from CysK in that it can also use thiosulfate instead of sulfide, to produce cysteine thiosulfonate instead of cysteine. Alternate name: O-acetylserine (thiol)-lyase [Amino acid biosynthesis, Serine family]. Length = 290

>gnl|CDD|178171 PLN02556, PLN02556, cysteine synthase/L-3-cyanoalanine synthase

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 19/168 (11%)

Query: 37  IFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISA--------SLGNHAQAMCYHGS 88
           I  K++ FQ T S K+R A    L + ED +KK +I+         + GN   ++ +  +
Sbjct: 76  IAAKQEMFQPTSSIKDRPA----LAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAA 131

Query: 89  RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
                + + MP    + +    R +GA +++   D  +     +KK  EL  +  + ++ 
Sbjct: 132 MKGYKMILTMPSYTSLERRVTMRAFGAELVL--TDPTKGMGGTVKKAYELLESTPDAFML 189

Query: 149 SGLSVLGYDHPDIMAGQGTVGLEI-VDQVANIDAIVVPVGGGGLIAGV 195
              S    +  +      T G EI  D +  +D  V+ +G GG ++GV
Sbjct: 190 QQFS----NPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGV 233

Length = 368

>gnl|CDD|233403 TIGR01415, trpB_rel, pyridoxal-phosphate dependent TrpB-like enzyme

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 46/197 (23%), Positives = 73/197 (37%), Gaps = 27/197 (13%)

Query: 33  TKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNI 92
           T   I+ K +    TGS K   A         +  K+ V     G    A+   G+   +
Sbjct: 83  TPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGAKRLVTETGAGQWGSALSLAGALFGL 142

Query: 93  PVTVVM--------PIVAPIMKIQACR---------RYGATVIVEGADMKEAKNIALKKG 135
              V M        P    +M++              +G  V+ E  D   +  IA+ + 
Sbjct: 143 ECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFTEFGREVLKEDPDHPGSLGIAISEA 202

Query: 136 AELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANI----DAIVVPVGGGGL 191
            E  L+  +   S G SVL +     +  Q  +GLE   Q+       D I+  VGGG  
Sbjct: 203 IEYALSDEDTKYSLG-SVLNHV----LLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSN 257

Query: 192 IAGVAYDH-PDIMAGQG 207
            AG+A+    D ++G+ 
Sbjct: 258 FAGLAFPFVADKLSGKI 274

This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found [Unknown function, Enzymes of unknown specificity]. Length = 419

>gnl|CDD|163556 TIGR03844, cysteate_syn, cysteate synthase

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 44  FQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMP 99
           F  T SFKE  A   +  L E   K  V+ AS GN  +A     +    PV +V+P
Sbjct: 94  FMRTCSFKELEALPTMQRLKERGGKTLVV-ASAGNTGRAFAEVSAITGQPVILVVP 148

Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Energy metabolism, Methanogenesis]. Length = 398

>gnl|CDD|130808 TIGR01747, diampropi_NH3ly, diaminopropionate ammonia-lyase family

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 38/200 (19%), Positives = 76/200 (38%), Gaps = 36/200 (18%)

Query: 27  SHLSELTKMEIFLKKDFFQVTG--SFKERGACYALLMLSEDQKKKGV------------- 71
            HL+ L  ++  L KD  +  G  +FK  G  YA+     ++    +             
Sbjct: 29  DHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAI 88

Query: 72  ---------ISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA 122
                     +A+ GNH + + +   +L     V MP  +   +++     GA   +   
Sbjct: 89  GEKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM 148

Query: 123 DMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDH-PD-IMAGQGTVGLEIVDQVANID 180
           +  +   +A++   + G       +    +  GY+  P  IM G  T+  E V+Q+  + 
Sbjct: 149 NYDDTVRLAMQMAQQHG-----WVVVQDTAWEGYEKIPTWIMQGYATLADEAVEQLREMG 203

Query: 181 A-----IVVPVGGGGLIAGV 195
           +     +++  G G +  GV
Sbjct: 204 SVTPTHVLLQAGVGSMAGGV 223

This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase) [Energy metabolism, Other]. Length = 376

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
COG1171	347	IlvA Threonine dehydratase [Amino acid transport a	100.0
KOG1250|consensus	457		100.0
PRK08526	403	threonine dehydratase; Provisional	100.0
PRK12483	521	threonine dehydratase; Reviewed	100.0
PLN02970	328	serine racemase	100.0
PRK08638	333	threonine dehydratase; Validated	100.0
PRK08198	404	threonine dehydratase; Provisional	100.0
PRK06382	406	threonine dehydratase; Provisional	100.0
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	100.0
PLN02550	591	threonine dehydratase	100.0
TIGR01124	499	ilvA_2Cterm threonine ammonia-lyase, biosynthetic,	100.0
TIGR02079	409	THD1 threonine dehydratase. This model represents	100.0
PRK07048	321	serine/threonine dehydratase; Validated	100.0
PRK06110	322	hypothetical protein; Provisional	100.0
PRK07476	322	eutB threonine dehydratase; Provisional	100.0
TIGR02991	317	ectoine_eutB ectoine utilization protein EutB. Mem	100.0
PRK09224	504	threonine dehydratase; Reviewed	100.0
PRK08639	420	threonine dehydratase; Validated	100.0
cd06448	316	L-Ser-dehyd Serine dehydratase is a pyridoxal phos	100.0
PRK06450	338	threonine synthase; Validated	100.0
PRK06815	317	hypothetical protein; Provisional	100.0
PRK08197	394	threonine synthase; Validated	100.0
PRK07591	421	threonine synthase; Validated	100.0
PRK07334	403	threonine dehydratase; Provisional	100.0
cd06447	404	D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph	100.0
PRK08813	349	threonine dehydratase; Provisional	100.0
cd01562	304	Thr-dehyd Threonine dehydratase: The first step in	100.0
PRK08246	310	threonine dehydratase; Provisional	100.0
PRK02991	441	D-serine dehydratase; Provisional	100.0
KOG1251|consensus	323		100.0
PRK06260	397	threonine synthase; Validated	100.0
PLN02569	484	threonine synthase	100.0
TIGR02035	431	D_Ser_am_lyase D-serine ammonia-lyase. This family	100.0
cd01563	324	Thr-synth_1 Threonine synthase is a pyridoxal phos	100.0
PRK06608	338	threonine dehydratase; Provisional	100.0
PRK05638	442	threonine synthase; Validated	100.0
PRK08329	347	threonine synthase; Validated	100.0
PRK08206	399	diaminopropionate ammonia-lyase; Provisional	100.0
TIGR01747	376	diampropi_NH3ly diaminopropionate ammonia-lyase fa	100.0
PRK06381	319	threonine synthase; Validated	100.0
PRK06352	351	threonine synthase; Validated	100.0
PLN03013	429	cysteine synthase	100.0
PLN02565	322	cysteine synthase	100.0
TIGR03528	396	2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem	100.0
PRK06721	352	threonine synthase; Reviewed	100.0
PRK07409	353	threonine synthase; Validated	100.0
PLN02356	423	phosphateglycerate kinase	100.0
PRK10717	330	cysteine synthase A; Provisional	100.0
cd01561	291	CBS_like CBS_like: This subgroup includes Cystathi	100.0
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	100.0
TIGR00260	328	thrC threonine synthase. Involved in threonine bio	100.0
PRK11761	296	cysM cysteine synthase B; Provisional	100.0
TIGR01136	299	cysKM cysteine synthases. This model discriminates	100.0
TIGR03844	398	cysteate_syn cysteate synthase. Members of this fa	100.0
TIGR01138	290	cysM cysteine synthase B. Alternate name: O-acetyl	100.0
PLN02556	368	cysteine synthase/L-3-cyanoalanine synthase	100.0
PLN00011	323	cysteine synthase	100.0
TIGR01139	298	cysK cysteine synthase A. This model distinguishes	100.0
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	100.0
PF00291	306	PALP: Pyridoxal-phosphate dependent enzyme; InterP	100.0
cd00640	244	Trp-synth-beta_II Tryptophan synthase beta superfa	100.0
TIGR01415	419	trpB_rel pyridoxal-phosphate dependent TrpB-like e	100.0
KOG1252|consensus	362		100.0
TIGR00263	385	trpB tryptophan synthase, beta subunit. Tryptophan	100.0
PRK04346	397	tryptophan synthase subunit beta; Validated	100.0
PRK03910	331	D-cysteine desulfhydrase; Validated	100.0
PLN02618	410	tryptophan synthase, beta chain	100.0
cd06446	365	Trp-synth_B Tryptophan synthase-beta: Trptophan sy	100.0
PRK13028	402	tryptophan synthase subunit beta; Provisional	100.0
KOG1481|consensus	391		100.0
TIGR01275	311	ACC_deam_rel pyridoxal phosphate-dependent enzymes	100.0
PRK12391	427	tryptophan synthase subunit beta; Reviewed	100.0
COG0498	411	ThrC Threonine synthase [Amino acid transport and	100.0
PRK12390	337	1-aminocyclopropane-1-carboxylate deaminase; Provi	100.0
cd06449	307	ACCD Aminocyclopropane-1-carboxylate deaminase (AC	100.0
TIGR01274	337	ACC_deam 1-aminocyclopropane-1-carboxylate deamina	100.0
PRK13803	610	bifunctional phosphoribosylanthranilate isomerase/	100.0
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	100.0
PRK14045	329	1-aminocyclopropane-1-carboxylate deaminase; Provi	100.0
PRK09225	462	threonine synthase; Validated	99.97
cd01560	460	Thr-synth_2 Threonine synthase catalyzes the final	99.96
COG0133	396	TrpB Tryptophan synthase beta chain [Amino acid tr	99.95
COG3048	443	DsdA D-serine dehydratase [Amino acid transport an	99.93
COG1350	432	Predicted alternative tryptophan synthase beta-sub	99.91
COG2515	323	Acd 1-aminocyclopropane-1-carboxylate deaminase [A	99.9
KOG1395|consensus	477		99.9
PF03808	172	Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp	95.58
cd06533	171	Glyco_transf_WecG_TagA The glycosyltransferase Wec	93.03
TIGR00696	177	wecB_tagA_cpsF bacterial polymer biosynthesis prot	90.74
KOG0025|consensus	354		87.17
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	85.59
PRK03692	243	putative UDP-N-acetyl-D-mannosaminuronic acid tran	84.94
PRK08340	259	glucose-1-dehydrogenase; Provisional	82.43
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	82.31
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	81.79
KOG1201|consensus	300		81.34
PRK06720	169	hypothetical protein; Provisional	80.92
PRK07814	263	short chain dehydrogenase; Provisional	80.83
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	80.78
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	80.28
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	80.24

>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.3e-57  Score=409.21  Aligned_cols=234  Identities=43%  Similarity=0.631  Sum_probs=223.1

Q ss_pred             ccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHh-cCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622          19 DQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSED-QKKKGVISASLGNHAQAMCYHGSRLNIPVTV   96 (269)
Q Consensus        19 ~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~-~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i   96 (269)
                      ..+|||.+++ |++.+|.+||+|+|++||+||||.|||++.++.+.++ ++..+||++|+||||+++|++|+++|++++|
T Consensus        23 ~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~~~gViaaSaGNHaQGvA~aa~~lGi~a~I  102 (347)
T COG1171          23 VNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAAGVIAASAGNHAQGVAYAAKRLGIKATI  102 (347)
T ss_pred             ccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhhcCceEEecCCcHHHHHHHHHHHhCCCEEE
Confidence            3599999999 9999999999999999999999999999999998644 6788899999999999999999999999999


Q ss_pred             EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622          97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV  176 (269)
Q Consensus        97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql  176 (269)
                      |||.++|..|.+.++.|||+|+.++.+|+++.+.+++++++.|++|+++          |++|+.++||.|++.||++|+
T Consensus       103 vMP~~tp~~Kv~a~r~~GaeVil~g~~~dda~~~a~~~a~~~G~~~i~p----------fD~p~viAGQGTi~lEileq~  172 (347)
T COG1171         103 VMPETTPKIKVDATRGYGAEVILHGDNFDDAYAAAEELAEEEGLTFVPP----------FDDPDVIAGQGTIALEILEQL  172 (347)
T ss_pred             EecCCCcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHHcCCEEeCC----------CCCcceeecccHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999          999999999999999999999


Q ss_pred             CC-CCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCC-CCCCCCcccccccccCCCCC
Q psy5622         177 AN-IDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGK-PTPVSVQPTLADGLAVPLVG  254 (269)
Q Consensus       177 ~~-~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~-~~~~~~~~t~a~gl~~~~~~  254 (269)
                      +. ||+||||+|+||+++|++.++|.+       .|.++||||||+++++|++|++.|. +...+..+|++||+++..++
T Consensus       173 ~~~~d~v~vpvGGGGLisGia~~~k~~-------~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g  245 (347)
T COG1171         173 PDLPDAVFVPVGGGGLISGIATALKAL-------SPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPG  245 (347)
T ss_pred             cccCCEEEEecCccHHHHHHHHHHHHh-------CCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCCCC
Confidence            96 599999999999999999999999       9999999999999999999999994 44555588999999999999


Q ss_pred             HHHHHHHhhhhcccC
Q psy5622         255 WNAFETAAPLIDKMF  269 (269)
Q Consensus       255 ~~~~~~~~~~~~~~~  269 (269)
                      ..+|+++++++|+++
T Consensus       246 ~~tf~i~~~~vd~~v  260 (347)
T COG1171         246 DLTFEILRELVDDIV  260 (347)
T ss_pred             HHHHHHHHHcCCcEE
Confidence            999999999999875

>KOG1250|consensus

Probab=100.00  E-value=3.3e-55  Score=393.61  Aligned_cols=238  Identities=50%  Similarity=0.736  Sum_probs=229.2

Q ss_pred             eeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCC
Q psy5622          15 FVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIP   93 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~   93 (269)
                      +....-.|||.+.- |++.+|.++|+|+|++||+||||.||+.+++.++.+++++.+|+++|.||||.|+|++|+++|++
T Consensus        60 i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~~~gViasSaGNha~a~Ayaa~~Lgip  139 (457)
T KOG1250|consen   60 IYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQKKAGVIASSAGNHAQAAAYAARKLGIP  139 (457)
T ss_pred             cccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhhcCceEEecCccHHHHHHHHHHhcCCc
Confidence            44455699999997 99999999999999999999999999999999998888899999999999999999999999999


Q ss_pred             eEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHH
Q psy5622          94 VTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIV  173 (269)
Q Consensus        94 ~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~  173 (269)
                      ++||||..+|..|.+.++.+||+|+..+.+++++..++.++++++++.|+++          |+||+.|+|+.|++.||.
T Consensus       140 aTIVmP~~tp~~kiq~~~nlGA~Vil~G~~~deAk~~a~~lAke~gl~yI~p----------fDhP~I~aGqgTig~EIl  209 (457)
T KOG1250|consen  140 ATIVMPVATPLMKIQRCRNLGATVILSGEDWDEAKAFAKRLAKENGLTYIPP----------FDHPDIWAGQGTIGLEIL  209 (457)
T ss_pred             eEEEecCCChHHHHHHHhccCCEEEEecccHHHHHHHHHHHHHhcCceecCC----------CCCchhhcCcchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999          999999999999999999


Q ss_pred             hhcCCCC-EEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCC
Q psy5622         174 DQVANID-AIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPL  252 (269)
Q Consensus       174 ~ql~~~d-~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~  252 (269)
                      +|++.+| +|+||||+||+++||+.++|+.       +|+++|||||+++|++|..+++.|+++..+...|+|||++++.
T Consensus       210 ~ql~~~~~AI~vpVGGGGLiaGIat~vk~~-------~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~  282 (457)
T KOG1250|consen  210 EQLKEPDGAIVVPVGGGGLIAGIATGVKRV-------GPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKT  282 (457)
T ss_pred             HhhcCCCCeEEEecCCchhHHHHHHHHHHh-------CCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccch
Confidence            9999555 9999999999999999999999       9999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHhhhhcccC
Q psy5622         253 VGWNAFETAAPLIDKMF  269 (269)
Q Consensus       253 ~~~~~~~~~~~~~~~~~  269 (269)
                      ++.++|+..+.++|+++
T Consensus       283 Vg~~tf~~a~~~~d~vv  299 (457)
T KOG1250|consen  283 VGENTFELAQKLVDRVV  299 (457)
T ss_pred             hhHHHHHHHHhcCceEE
Confidence            99999999999999864

>PRK08526 threonine dehydratase; Provisional

Probab=100.00  E-value=2.3e-54  Score=403.86  Aligned_cols=235  Identities=34%  Similarity=0.542  Sum_probs=223.2

Q ss_pred             cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622          18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV   96 (269)
Q Consensus        18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i   96 (269)
                      ..++|||++++ |++.+|++||+|+|++|||||||+|+|.+.+..+.++.+.++||++|+||||+++|++|+++|++|+|
T Consensus        17 ~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~~~gVV~aSaGNhg~avA~aa~~~Gi~~~I   96 (403)
T PRK08526         17 FVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQKQHGVIAASAGNHAQGVAISAKKFGIKAVI   96 (403)
T ss_pred             cCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhcCCEEEEECccHHHHHHHHHHHHcCCCEEE
Confidence            35799999998 99989999999999999999999999999999987666778899999999999999999999999999


Q ss_pred             EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622          97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV  176 (269)
Q Consensus        97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql  176 (269)
                      |||+.++..|++.++.|||+|+.++++++++.+.+.+++++.+++|+++          |+||..++||+|++.||++|+
T Consensus        97 vmP~~~p~~k~~~~r~~GA~Vv~~g~~~~~a~~~a~~~a~~~g~~~v~p----------~~~~~~i~G~gtia~EI~eq~  166 (403)
T PRK08526         97 VMPEATPLLKVSGTKALGAEVILKGDNYDEAYAFALEYAKENNLTFIHP----------FEDEEVMAGQGTIALEMLDEI  166 (403)
T ss_pred             EEcCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCEeeCC----------CCCHHHHhhhHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999          899999999999999999999


Q ss_pred             CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHH
Q psy5622         177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN  256 (269)
Q Consensus       177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~  256 (269)
                      +.+|+||+|+|+||+++|++.++|++       +|.++||||||+++++++.+++.|++...+..+|+++|++++.+++.
T Consensus       167 ~~~D~vvvpvGgGGl~aGia~~~k~~-------~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~~~  239 (403)
T PRK08526        167 SDLDMVVVPVGGGGLISGIASAAKQI-------NPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDASPI  239 (403)
T ss_pred             CCCCEEEEecChHHHHHHHHHHHHHh-------CCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCCCHH
Confidence            99999999999999999999999999       99999999999999999999999987766667899999999999999


Q ss_pred             HHHHHhhhhcccC
Q psy5622         257 AFETAAPLIDKMF  269 (269)
Q Consensus       257 ~~~~~~~~~~~~~  269 (269)
                      +|+.+++++|+++
T Consensus       240 ~~~~~~~~vd~~v  252 (403)
T PRK08526        240 NLAIILECVDDFV  252 (403)
T ss_pred             HHHHHHHhCCEEE
Confidence            9999999999874

>PRK12483 threonine dehydratase; Reviewed

Probab=100.00  E-value=1.2e-53  Score=408.19  Aligned_cols=235  Identities=37%  Similarity=0.548  Sum_probs=223.4

Q ss_pred             cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622          18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV   96 (269)
Q Consensus        18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i   96 (269)
                      ..++|||++++ |++.+|.+||+|+|++|||||||+|+|++.+..+.++.+.++||++|+||||+++|++|+.+|++|+|
T Consensus        34 ~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~~~GVV~aSaGNha~gvA~aA~~lGi~~~I  113 (521)
T PRK12483         34 VARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVITASAGNHAQGVALAAARLGVKAVI  113 (521)
T ss_pred             hcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHhcCcEEEECCCHHHHHHHHHHHHhCCCEEE
Confidence            45799999998 99999999999999999999999999999999876566677899999999999999999999999999


Q ss_pred             EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622          97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV  176 (269)
Q Consensus        97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql  176 (269)
                      |||+.++..|+..++.|||+|+.++++++++.+.+.+++++.+++|+++          |+||.+++||+|++.||++|+
T Consensus       114 vmP~~tp~~Kv~~~r~~GAeVil~g~~~d~a~~~A~~la~e~g~~~v~p----------fdd~~viaGqgTig~EI~eQ~  183 (521)
T PRK12483        114 VMPRTTPQLKVDGVRAHGGEVVLHGESFPDALAHALKLAEEEGLTFVPP----------FDDPDVIAGQGTVAMEILRQH  183 (521)
T ss_pred             EECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCeeeCC----------CCChHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999          999999999999999999999


Q ss_pred             C-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCH
Q psy5622         177 A-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGW  255 (269)
Q Consensus       177 ~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~  255 (269)
                      + .+|+||+|+|+||+++|++.++|++       .|.+|||||||++++++..+++.|++...+...|++||++++.++.
T Consensus       184 ~~~~D~VvvpvGgGGliaGia~~~K~~-------~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~  256 (521)
T PRK12483        184 PGPLDAIFVPVGGGGLIAGIAAYVKYV-------RPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGE  256 (521)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHh-------CCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCH
Confidence            8 5999999999999999999999999       9999999999999999999999999877667789999999999999


Q ss_pred             HHHHHHhhhhcccC
Q psy5622         256 NAFETAAPLIDKMF  269 (269)
Q Consensus       256 ~~~~~~~~~~~~~~  269 (269)
                      .+|+.+++++|++|
T Consensus       257 ~~~~~~~~~vd~vv  270 (521)
T PRK12483        257 HTFELCRHYVDEVV  270 (521)
T ss_pred             HHHHHHHHhCCEEE
Confidence            99999999999875

>PLN02970 serine racemase

Probab=100.00  E-value=2.7e-53  Score=387.85  Aligned_cols=234  Identities=32%  Similarity=0.513  Sum_probs=218.7

Q ss_pred             cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622          18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV   96 (269)
Q Consensus        18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i   96 (269)
                      ..++|||++++ |++.+|.+||+|+|++|||||||||++.+++.++.++++.++||++|+||||+|+|++|+.+|++|+|
T Consensus        24 ~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~i  103 (328)
T PLN02970         24 FIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQAEKGVVTHSSGNHAAALALAAKLRGIPAYI  103 (328)
T ss_pred             cCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhcCCeEEEECCcHHHHHHHHHHHHcCCCEEE
Confidence            45899999998 99888999999999999999999999999999887666778899999999999999999999999999


Q ss_pred             EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622          97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV  176 (269)
Q Consensus        97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql  176 (269)
                      |||+++++.|++.|+.|||+|+.++++++++.+.+++++++.+++|+++          |+|+..++||+++++||++|+
T Consensus       104 vvp~~~~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~la~~~g~~~~~~----------~~n~~~~~g~~t~g~Ei~~ql  173 (328)
T PLN02970        104 VVPKNAPACKVDAVIRYGGIITWCEPTVESREAVAARVQQETGAVLIHP----------YNDGRVISGQGTIALEFLEQV  173 (328)
T ss_pred             EECCCCCHHHHHHHHhcCCEEEEeCCCHHHHHHHHHHHHHhcCCEEeCC----------CCCcchhhehHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999889999999          899999999999999999999


Q ss_pred             CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHH
Q psy5622         177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN  256 (269)
Q Consensus       177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~  256 (269)
                      +.||+||+|+|+||+++|++++||+.       +|.+|||+|||++++++..+++.|.+...+..+|+++|+.++ ++..
T Consensus       174 ~~~D~vv~~vG~GG~~~Gi~~~lk~~-------~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~-~~~~  245 (328)
T PLN02970        174 PELDVIIVPISGGGLISGIALAAKAI-------KPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRAS-LGDL  245 (328)
T ss_pred             cCCCEEEEeeCchHHHHHHHHHHHhc-------CCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCC-cCHH
Confidence            99999999999999999999999998       999999999999999999999999876656668999999876 7888


Q ss_pred             HHHHHhhhhcccC
Q psy5622         257 AFETAAPLIDKMF  269 (269)
Q Consensus       257 ~~~~~~~~~~~~~  269 (269)
                      +|..+++++|+++
T Consensus       246 ~~~~~~~~~d~~v  258 (328)
T PLN02970        246 TWPVVRDLVDDVI  258 (328)
T ss_pred             HHHHHHhhCCEEE
Confidence            8999998888764

>PRK08638 threonine dehydratase; Validated

Probab=100.00  E-value=3.2e-53  Score=387.71  Aligned_cols=235  Identities=39%  Similarity=0.562  Sum_probs=220.6

Q ss_pred             cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622          18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV   96 (269)
Q Consensus        18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i   96 (269)
                      ..++|||++++ |++..|.+||+|+|++|||||||||++.+++.++.++.+.++|+++|+||+|+|+|++|+.+|++|+|
T Consensus        24 ~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~~~~vv~~SsGN~g~alA~~aa~~G~~~~i  103 (333)
T PRK08638         24 RIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVALSCALLGIDGKV  103 (333)
T ss_pred             cCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhcCCeEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence            45899999998 98888899999999999999999999999999876656677899999999999999999999999999


Q ss_pred             EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622          97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV  176 (269)
Q Consensus        97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql  176 (269)
                      |||+++++.|+++++.|||+|+.++++++++.+.+++++++.+++|+++          |+||.+++||+++++||++|+
T Consensus       104 v~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~a~~~g~~~~~~----------~~~~~~~~g~~t~a~Ei~~q~  173 (333)
T PRK08638        104 VMPKGAPKSKVAATCGYGAEVVLHGDNFNDTIAKVEEIVEEEGRTFIPP----------YDDPKVIAGQGTIGLEILEDL  173 (333)
T ss_pred             EeCCCCcHHHHHHHHHcCCEEEEECcCHHHHHHHHHHHHHhcCCEEcCc----------CCCcchhccccHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999          899999999999999999999


Q ss_pred             CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHH
Q psy5622         177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN  256 (269)
Q Consensus       177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~  256 (269)
                      .++|+||+|+|+||+++|++++||+.       +|.+++|+|||++|++|+.+++.|++...+..+|+++|+.++.|+..
T Consensus       174 ~~~d~vv~~vG~Gg~~~Gv~~~lk~~-------~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~~p~~~  246 (333)
T PRK08638        174 WDVDTVIVPIGGGGLIAGIAVALKSI-------NPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVSRPGNL  246 (333)
T ss_pred             CCCCEEEEEeChhHHHHHHHHHHHHh-------CCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCCCccHH
Confidence            88999999999999999999999999       89999999999999999999999988776666799999998889998


Q ss_pred             HHHHHhhhhcccC
Q psy5622         257 AFETAAPLIDKMF  269 (269)
Q Consensus       257 ~~~~~~~~~~~~~  269 (269)
                      .++.+++++|+++
T Consensus       247 ~~~~~~~~~d~~v  259 (333)
T PRK08638        247 TYEIVRELVDDIV  259 (333)
T ss_pred             HHHHHHHhCCeEE
Confidence            8888888888764

>PRK08198 threonine dehydratase; Provisional

Probab=100.00  E-value=2.4e-53  Score=398.42  Aligned_cols=235  Identities=40%  Similarity=0.647  Sum_probs=223.2

Q ss_pred             cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622          18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV   96 (269)
Q Consensus        18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i   96 (269)
                      ..++|||++++ |++.+|.+||+|+|++|||||||||+|.+++.++.++++.++||++|+||||+++|++|+++|++|+|
T Consensus        19 ~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~i   98 (404)
T PRK08198         19 VVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEERARGVVAASAGNHAQGVAYAASLLGIKATI   98 (404)
T ss_pred             cCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhcCCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence            45799999998 99989999999999999999999999999999987777888999999999999999999999999999


Q ss_pred             EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622          97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV  176 (269)
Q Consensus        97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql  176 (269)
                      |||++++..|+++++.|||+|+.++.+++++.+.+.+++++.+++|++|          |+||..++||+|+|+||++|+
T Consensus        99 v~p~~~~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~~~~~~g~~~~~~----------~~~~~~~~g~~t~a~EI~~q~  168 (404)
T PRK08198         99 VMPETAPLSKVKATRSYGAEVVLHGDVYDEALAKAQELAEETGATFVHP----------FDDPDVIAGQGTIGLEILEDL  168 (404)
T ss_pred             EECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCEecCC----------CCCccHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999          899999999999999999999


Q ss_pred             CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHH
Q psy5622         177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN  256 (269)
Q Consensus       177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~  256 (269)
                      +++|+||+|+|+||+++|++.+||++       .|.+++|||||+++++++.+++.|++...+..+|+++|+.++.|+..
T Consensus       169 ~~~d~vv~~vG~GG~~~Gi~~~~k~~-------~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~~  241 (404)
T PRK08198        169 PDVDTVVVPIGGGGLISGVATAVKAL-------RPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDL  241 (404)
T ss_pred             CCCCEEEEEeCHhHHHHHHHHHHHHh-------CCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCcCHH
Confidence            99999999999999999999999999       99999999999999999999999988766667899999999999999


Q ss_pred             HHHHHhhhhcccC
Q psy5622         257 AFETAAPLIDKMF  269 (269)
Q Consensus       257 ~~~~~~~~~~~~~  269 (269)
                      +++.+++++|+++
T Consensus       242 ~~~~~~~~~d~~v  254 (404)
T PRK08198        242 TFEIIRELVDDVV  254 (404)
T ss_pred             HHHHHHHhCCEEE
Confidence            9999999999864

>PRK06382 threonine dehydratase; Provisional

Probab=100.00  E-value=2.7e-53  Score=398.01  Aligned_cols=235  Identities=35%  Similarity=0.552  Sum_probs=221.5

Q ss_pred             cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622          18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV   96 (269)
Q Consensus        18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i   96 (269)
                      ..++|||++++ |++.+|.+||+|+|++|||||||||+|.+++..+.+....++||++|+||||+|+|++|+.+|++|+|
T Consensus        22 ~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~~~gvv~aSsGN~g~a~A~aa~~~G~~~~i  101 (406)
T PRK06382         22 YLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDELRNGVITASAGNHAQGVAYAASINGIDAKI  101 (406)
T ss_pred             cCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhccCCeEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence            45899999998 99989999999999999999999999999998886655567799999999999999999999999999


Q ss_pred             EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622          97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV  176 (269)
Q Consensus        97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql  176 (269)
                      |||+.+++.|++.++.|||+|+.++++++++.+.+++++++.+++|+++          |+||.+++|++|+++||++|+
T Consensus       102 vmp~~~~~~k~~~~~~~GA~Vv~~~~~~~~a~~~a~~la~~~~~~~v~~----------~~~~~~i~g~~t~~~Ei~eq~  171 (406)
T PRK06382        102 VMPEYTIPQKVNAVEAYGAHVILTGRDYDEAHRYADKIAMDENRTFIEA----------FNDRWVISGQGTIGLEIMEDL  171 (406)
T ss_pred             EEcCCCHHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEecCc----------cCChHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999          899999999999999999999


Q ss_pred             CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHH
Q psy5622         177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN  256 (269)
Q Consensus       177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~  256 (269)
                      +.||+||+|+|+||+++|+++++|+.       +|.+++|||||+++++++++++.|++.+.+..+|+++|++++.|+..
T Consensus       172 ~~~d~vvvpvG~GG~~~Gv~~~~k~~-------~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~  244 (406)
T PRK06382        172 PDLDQIIVPVGGGGLISGIALAAKHI-------NPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDL  244 (406)
T ss_pred             CCCCEEEEeeChHHHHHHHHHHHHHh-------CCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCccHH
Confidence            99999999999999999999999999       99999999999999999999999987766566899999999999998


Q ss_pred             HHHHHhhhhcccC
Q psy5622         257 AFETAAPLIDKMF  269 (269)
Q Consensus       257 ~~~~~~~~~~~~~  269 (269)
                      +++.+++++|+++
T Consensus       245 ~~~~~~~~~d~~v  257 (406)
T PRK06382        245 TFDIAKNYVDDIV  257 (406)
T ss_pred             HHHHHHHcCCEEE
Confidence            9999999999864

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=100.00  E-value=3.3e-53  Score=394.59  Aligned_cols=231  Identities=40%  Similarity=0.625  Sum_probs=220.2

Q ss_pred             Ccccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcC
Q psy5622          22 FNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPI  100 (269)
Q Consensus        22 TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~  100 (269)
                      |||++++ |++.+|.+||+|+|++|||||||||+|.+++.++.++++.++|+++|+||||+|+|++|+++|++|+||||+
T Consensus         1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~   80 (380)
T TIGR01127         1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQRGVVAASAGNHAQGVAYAAKKFGIKAVIVMPE   80 (380)
T ss_pred             CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            8999998 999899999999999999999999999999999876666678999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcCCCC
Q psy5622         101 VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANID  180 (269)
Q Consensus       101 ~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~~~d  180 (269)
                      .+++.|+++++.|||+|+.++++++++.+.+++++++.+++|+++          |+|+..++||+|++.||++|++.+|
T Consensus        81 ~~~~~k~~~~~~~GA~V~~~~~~~~~a~~~a~~~~~~~~~~~~~~----------~~~~~~~~g~~t~~~Ei~~q~~~~D  150 (380)
T TIGR01127        81 SAPPSKVKATKSYGAEVILHGDDYDEAYAFATSLAEEEGRVFVHP----------FDDEFVMAGQGTIGLEIMEDIPDVD  150 (380)
T ss_pred             CCcHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEecCC----------CCChhhhhhhHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999999999999999          8999999999999999999999999


Q ss_pred             EEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHHHHHH
Q psy5622         181 AIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFET  260 (269)
Q Consensus       181 ~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~  260 (269)
                      +||+|+|+||+++|++.++|++       .|.+|+|||||+++++++.+++.|++.+.+...|+++|+.++.|+..+|+.
T Consensus       151 ~vv~~vG~Gg~~aGi~~~~k~~-------~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~  223 (380)
T TIGR01127       151 TVIVPVGGGGLISGVASAAKQI-------NPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNI  223 (380)
T ss_pred             EEEEEeChHHHHHHHHHHHHHh-------CCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHH
Confidence            9999999999999999999999       899999999999999999999999887766678999999999999999999


Q ss_pred             HhhhhcccC
Q psy5622         261 AAPLIDKMF  269 (269)
Q Consensus       261 ~~~~~~~~~  269 (269)
                      +++++|+++
T Consensus       224 ~~~~vd~~v  232 (380)
T TIGR01127       224 IKEYVDDVV  232 (380)
T ss_pred             HHHhCCEEE
Confidence            999999864

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PLN02550 threonine dehydratase

Probab=100.00  E-value=4.5e-53  Score=406.91  Aligned_cols=236  Identities=38%  Similarity=0.545  Sum_probs=224.5

Q ss_pred             ccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622          17 IRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT   95 (269)
Q Consensus        17 ~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~   95 (269)
                      ...++|||++++ |++.+|++||+|+|++|||||||+|+|.+.+..+.++.+.++||++|+||||+++|++|+++|++|+
T Consensus       105 ~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~~~GVV~aSaGNhAqgvA~aA~~lGika~  184 (591)
T PLN02550        105 DVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVICSSAGNHAQGVALSAQRLGCDAV  184 (591)
T ss_pred             ccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHcCCCEE
Confidence            345799999998 9999999999999999999999999999999988666677889999999999999999999999999


Q ss_pred             EEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhh
Q psy5622          96 VVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQ  175 (269)
Q Consensus        96 ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~q  175 (269)
                      ||||+.++..|++.++.|||+|+.++++++++.+.+++++++.+++|+++          |+||.+++||+|+|.||++|
T Consensus       185 IvmP~~tp~~Kv~~~r~~GAeVvl~g~~~dea~~~A~~la~e~g~~fi~p----------fddp~viaGqgTig~EI~eQ  254 (591)
T PLN02550        185 IAMPVTTPEIKWQSVERLGATVVLVGDSYDEAQAYAKQRALEEGRTFIPP----------FDHPDVIAGQGTVGMEIVRQ  254 (591)
T ss_pred             EEECCCCCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHhcCCEEECC----------CCChHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999          99999999999999999999


Q ss_pred             cC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCC
Q psy5622         176 VA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVG  254 (269)
Q Consensus       176 l~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~  254 (269)
                      ++ .+|+||+|+|+||+++|++.++|++       +|.+|||||||++++++..+++.|++...+...|++||++++.++
T Consensus       255 l~~~~D~VvvpVGgGGLiaGia~~lK~l-------~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G  327 (591)
T PLN02550        255 HQGPLHAIFVPVGGGGLIAGIAAYVKRV-------RPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVG  327 (591)
T ss_pred             cCCCCCEEEEEeChhHHHHHHHHHHHHh-------CCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCC
Confidence            98 5999999999999999999999999       999999999999999999999999987766678999999999999


Q ss_pred             HHHHHHHhhhhcccC
Q psy5622         255 WNAFETAAPLIDKMF  269 (269)
Q Consensus       255 ~~~~~~~~~~~~~~~  269 (269)
                      ..+|+.+++++|++|
T Consensus       328 ~~t~~i~~~~vD~vV  342 (591)
T PLN02550        328 EETFRLCRELVDGVV  342 (591)
T ss_pred             HHHHHHHHhhCCEEE
Confidence            999999999999875

>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form

Probab=100.00  E-value=7.5e-53  Score=402.52  Aligned_cols=237  Identities=39%  Similarity=0.575  Sum_probs=224.6

Q ss_pred             eccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCe
Q psy5622          16 VIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPV   94 (269)
Q Consensus        16 ~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~   94 (269)
                      ....++|||++++ |++.+|.+||+|+|++|||||||+|+|.+.+..+.++.+.++||++|+||||+++|++|+++|++|
T Consensus        12 ~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gVV~aSaGNha~~vA~aa~~~Gi~~   91 (499)
T TIGR01124        12 YEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARGVIAASAGNHAQGVAFSAARLGLKA   91 (499)
T ss_pred             hCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhcCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence            3345799999998 999999999999999999999999999999998766666788999999999999999999999999


Q ss_pred             EEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHh
Q psy5622          95 TVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVD  174 (269)
Q Consensus        95 ~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~  174 (269)
                      +||||+.+|..|++.++.|||+|+.++++++++.+.+.+++++.+++|+++          |+||..++|++|+|.||++
T Consensus        92 ~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~~~d~a~~~a~~la~~~g~~~i~p----------~~~~~~i~G~gtig~EI~~  161 (499)
T TIGR01124        92 LIVMPETTPDIKVDAVRGFGGEVVLHGANFDDAKAKAIELSQEKGLTFIHP----------FDDPLVIAGQGTLALEILR  161 (499)
T ss_pred             EEEECCCCCHHHHHHHHhCCCEEEEeCcCHHHHHHHHHHHHHhcCCEeeCC----------CCChHHHHhhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999          8999999999999999999


Q ss_pred             hcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCC
Q psy5622         175 QVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLV  253 (269)
Q Consensus       175 ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~  253 (269)
                      |++ .+|+||+|+|+||+++|++.++|++       .|.+|||||||+++++++.+++.|++...+...|++||++++.+
T Consensus       162 q~~~~~D~vvvpvGgGGliaGia~~lk~~-------~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~  234 (499)
T TIGR01124       162 QVANPLDAVFVPVGGGGLAAGVAALIKQL-------MPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRV  234 (499)
T ss_pred             hCCCCCCEEEEccCccHHHHHHHHHHHHh-------CCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCc
Confidence            998 7999999999999999999999999       99999999999999999999999998777777899999999999


Q ss_pred             CHHHHHHHhhhhcccC
Q psy5622         254 GWNAFETAAPLIDKMF  269 (269)
Q Consensus       254 ~~~~~~~~~~~~~~~~  269 (269)
                      +..+|+.+++++|+++
T Consensus       235 g~~~~~~~~~~vd~vv  250 (499)
T TIGR01124       235 GDETFRLCQQYLDDIV  250 (499)
T ss_pred             cHHHHHHHHHhCCEEE
Confidence            9999999999999875

Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.

>TIGR02079 THD1 threonine dehydratase

Probab=100.00  E-value=2.2e-52  Score=391.73  Aligned_cols=236  Identities=33%  Similarity=0.469  Sum_probs=219.0

Q ss_pred             ccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622          17 IRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT   95 (269)
Q Consensus        17 ~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~   95 (269)
                      ...++|||++++ |++.+|.+||+|+|++|||||||+|+|.+.+..+.++.+.++||++|+||||+++|++|+++|++|+
T Consensus        12 ~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~~~gvv~aSsGN~g~a~A~~a~~~G~~~~   91 (409)
T TIGR02079        12 EVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQLAKGVVCASAGNHAQGFAYACRHLGVHGT   91 (409)
T ss_pred             CcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhhCCEEEEECccHHHHHHHHHHHHcCCCEE
Confidence            345799999998 9998999999999999999999999999999886555566789999999999999999999999999


Q ss_pred             EEEcCCCcHHHHHHHHHcCCE---EEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHH
Q psy5622          96 VVMPIVAPIMKIQACRRYGAT---VIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEI  172 (269)
Q Consensus        96 ivvp~~~~~~~~~~l~~~Ga~---v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI  172 (269)
                      ||||+.+++.|++.++.|||+   |+.++++++++.+.+.+++++.+++|+++          |+||.+++|++|+++||
T Consensus        92 iv~p~~~~~~k~~~~~~~GA~vv~v~~~g~~~~~a~~~a~~~~~~~g~~~~~~----------~~~~~~~~g~~ti~~Ei  161 (409)
T TIGR02079        92 VFMPATTPKQKIDRVKIFGGEFIEIILVGDTFDQCAAAAREHVEDHGGTFIPP----------FDDPRIIEGQGTVAAEI  161 (409)
T ss_pred             EEECCCCCHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCEEeCC----------CCCHhHhhhhHHHHHHH
Confidence            999999999999999999997   44567889999999999999999999999          89999999999999999


Q ss_pred             HhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCC
Q psy5622         173 VDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVP  251 (269)
Q Consensus       173 ~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~  251 (269)
                      ++|++ .||+||+|+|+||+++|++.++|++       +|.+++|||||++|+++..+++.|++...+..+|+++|++++
T Consensus       162 ~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~-------~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~  234 (409)
T TIGR02079       162 LDQLPEKPDYVVVPVGGGGLISGLTTYLAGT-------SPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVK  234 (409)
T ss_pred             HHhcCCCCCEEEEEecHhHHHHHHHHHHHHh-------CCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCC
Confidence            99998 5999999999999999999999999       999999999999999999999999876655668999999999


Q ss_pred             CCCHHHHHHHhhhhcccC
Q psy5622         252 LVGWNAFETAAPLIDKMF  269 (269)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~  269 (269)
                      .++..+|+.+++++|+++
T Consensus       235 ~~g~~~~~~~~~~vd~vv  252 (409)
T TIGR02079       235 RVGDLNFKALKDVPDEVT  252 (409)
T ss_pred             CCcHHHHHHHHHhCCcEE
Confidence            999989999999999874

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.

>PRK07048 serine/threonine dehydratase; Validated

Probab=100.00  E-value=4e-52  Score=379.20  Aligned_cols=235  Identities=34%  Similarity=0.508  Sum_probs=219.1

Q ss_pred             cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622          18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV   96 (269)
Q Consensus        18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i   96 (269)
                      ..++|||++++ |++..|.+||+|+|++|||||||||++.+++.++.++++.++|+++|+||||+|+|++|+.+|++|++
T Consensus        21 ~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~v  100 (321)
T PRK07048         21 VAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQRRAGVVTFSSGNHAQAIALSARLLGIPATI  100 (321)
T ss_pred             CCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhcCCcEEEeCCCHHHHHHHHHHHHcCCCEEE
Confidence            35799999998 88888899999999999999999999999999886566678899999999999999999999999999


Q ss_pred             EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622          97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV  176 (269)
Q Consensus        97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql  176 (269)
                      |||+++++.|+.+|+.|||+|+.++++++++.+.+++++++.+++|+++          |+|+.+++|++++++||++|+
T Consensus       101 vvp~~~~~~k~~~~~~~GAeV~~~~~~~~~~~~~a~~l~~~~g~~~~~~----------~~~~~~~~g~~t~~~EI~~q~  170 (321)
T PRK07048        101 VMPQDAPAAKVAATRGYGGEVVTYDRYTEDREEIGRRLAEERGLTLIPP----------YDHPHVIAGQGTAAKELFEEV  170 (321)
T ss_pred             EECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEEECC----------CCCcchhhccchHHHHHHhhc
Confidence            9999999999999999999999999988999999999999999999999          899999999999999999999


Q ss_pred             CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHH
Q psy5622         177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN  256 (269)
Q Consensus       177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~  256 (269)
                      +.||+||+|+|+||+++|+++++|++       +|.++|++|||++++++..++..|+....+...|+++|+.++.++..
T Consensus       171 ~~~D~vv~~vGtGG~~~Gi~~~~k~~-------~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~~~  243 (321)
T PRK07048        171 GPLDALFVCLGGGGLLSGCALAARAL-------SPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLGNY  243 (321)
T ss_pred             CCCCEEEEecChhHHHHHHHHHHHHh-------CCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCccHH
Confidence            99999999999999999999999999       89999999999999999999999987655566899999988888888


Q ss_pred             HHHHHhhhhcccC
Q psy5622         257 AFETAAPLIDKMF  269 (269)
Q Consensus       257 ~~~~~~~~~~~~~  269 (269)
                      +++.+++++|+++
T Consensus       244 ~~~~~~~~~d~~~  256 (321)
T PRK07048        244 TFPIIRRLVDDIV  256 (321)
T ss_pred             HHHHHHHhCCceE
Confidence            9999999988764

>PRK06110 hypothetical protein; Provisional

Probab=100.00  E-value=3.4e-52  Score=379.83  Aligned_cols=234  Identities=29%  Similarity=0.438  Sum_probs=216.5

Q ss_pred             cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhc-CCccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622          18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQ-KKKGVISASLGNHAQAMCYHGSRLNIPVT   95 (269)
Q Consensus        18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~-~~~~vv~~SsGN~g~alA~~a~~~G~~~~   95 (269)
                      ..++|||++++ |++.+|.+||+|+|++|||||||||++.+++.++.+++ ....|+++|+||||+|+|++|+++|++|+
T Consensus        18 ~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~   97 (322)
T PRK06110         18 AMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRVRGVISATRGNHGQSVAFAARRHGLAAT   97 (322)
T ss_pred             cCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCCceEEEECCCHHHHHHHHHHHHcCCCEE
Confidence            45899999998 99888999999999999999999999999999886443 35679999999999999999999999999


Q ss_pred             EEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhh
Q psy5622          96 VVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQ  175 (269)
Q Consensus        96 ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~q  175 (269)
                      ||||+++++.|+++++.|||+|+.++++++++.+.+++++++++++|+++          | ||..++||+|+++||++|
T Consensus        98 ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~-~~~~~~G~~t~~~Ei~~q  166 (322)
T PRK06110         98 IVVPHGNSVEKNAAMRALGAELIEHGEDFQAAREEAARLAAERGLHMVPS----------F-HPDLVRGVATYALELFRA  166 (322)
T ss_pred             EEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEcCC----------C-CChHHhccchHHHHHHhh
Confidence            99999999999999999999999999999999999999999989999888          7 678889999999999999


Q ss_pred             cCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCH
Q psy5622         176 VANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGW  255 (269)
Q Consensus       176 l~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~  255 (269)
                      ++.+|+||+|+|+||+++|++.++|+.       +|.+|+++|||+++++++.+++.|+..+.+...|+++|+.++.+++
T Consensus       167 ~~~~D~vv~pvG~Gg~~~Gv~~~~k~~-------~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~  239 (322)
T PRK06110        167 VPDLDVVYVPIGMGSGICGAIAARDAL-------GLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDP  239 (322)
T ss_pred             CCCCCEEEEecCHHHHHHHHHHHHHHh-------CCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccH
Confidence            999999999999999999999999998       8999999999999999999999998776666789999998888888


Q ss_pred             HHHHHHhhhhcccC
Q psy5622         256 NAFETAAPLIDKMF  269 (269)
Q Consensus       256 ~~~~~~~~~~~~~~  269 (269)
                      ..|+.+++++|+++
T Consensus       240 ~~~~~~~~~~d~~~  253 (322)
T PRK06110        240 EALEVIRAGADRIV  253 (322)
T ss_pred             HHHHHHHHhCCeEE
Confidence            88999999999864

>PRK07476 eutB threonine dehydratase; Provisional

Probab=100.00  E-value=3.9e-52  Score=379.42  Aligned_cols=235  Identities=37%  Similarity=0.558  Sum_probs=215.5

Q ss_pred             cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622          18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV   96 (269)
Q Consensus        18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i   96 (269)
                      ..++|||++++ |++..|.+||+|+|++|||||||||++.+++.++.+++..++||++|+||||+|+|++|+++|++|+|
T Consensus        16 ~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~~~gvv~aSsGN~g~alA~~a~~~G~~~~i   95 (322)
T PRK07476         16 RVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQERARGVVTASTGNHGRALAYAARALGIRATI   95 (322)
T ss_pred             CCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhhCCeEEEECCChHHHHHHHHHHHhCCCEEE
Confidence            45899999998 99889999999999999999999999999999987666556699999999999999999999999999


Q ss_pred             EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622          97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV  176 (269)
Q Consensus        97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql  176 (269)
                      |||+.+++.|++.|+.|||+|+.++++++++.+.+.+++++.+++|+++          ++||.+++|++++++||++|+
T Consensus        96 ~vp~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~g~~~~~~----------~~n~~~~~g~~t~~~Ei~~Q~  165 (322)
T PRK07476         96 CMSRLVPANKVDAIRALGAEVRIVGRSQDDAQAEVERLVREEGLTMVPP----------FDDPRIIAGQGTIGLEILEAL  165 (322)
T ss_pred             EeCCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEeCC----------CCCcceeechhHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999          899999999999999999999


Q ss_pred             CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCccccccccc--CCCCC
Q psy5622         177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLA--VPLVG  254 (269)
Q Consensus       177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~--~~~~~  254 (269)
                      +++|+||+|+|+||+++|++.+||++       .|.++||+|||+++++++.+++.|++...+..+|+++++.  ++.++
T Consensus       166 ~~~d~iv~~vG~GG~~~Gv~~~~k~~-------~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~~~  238 (322)
T PRK07476        166 PDVATVLVPLSGGGLASGVAAAVKAI-------RPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGLDN  238 (322)
T ss_pred             cCCCEEEEEcChHHHHHHHHHHHHHh-------CCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCccccccccccCCc
Confidence            98999999999999999999999999       8999999999999999999999998765556679999884  33346


Q ss_pred             HHHHHHHhhhhcccC
Q psy5622         255 WNAFETAAPLIDKMF  269 (269)
Q Consensus       255 ~~~~~~~~~~~~~~~  269 (269)
                      ..+++.+++++|+++
T Consensus       239 ~~~~~~~~~~~d~~~  253 (322)
T PRK07476        239 RYTFAMCRALLDDVV  253 (322)
T ss_pred             HHHHHHHHhcCCeEE
Confidence            677888888888753

>TIGR02991 ectoine_eutB ectoine utilization protein EutB

Probab=100.00  E-value=4.2e-52  Score=378.26  Aligned_cols=235  Identities=37%  Similarity=0.569  Sum_probs=216.6

Q ss_pred             cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622          18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV   96 (269)
Q Consensus        18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i   96 (269)
                      ..++|||++++ |++..|.+||+|+|++|||||||||++.+++.++.++.+.++++++|+||||+|+|++|+++|++|++
T Consensus        16 ~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~v   95 (317)
T TIGR02991        16 RVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQRAAGVVAASTGNHGRALAYAAAEEGVRATI   95 (317)
T ss_pred             cCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhccCCeEEEECCCHHHHHHHHHHHHhCCCEEE
Confidence            35799999998 88888999999999999999999999999999876555667899999999999999999999999999


Q ss_pred             EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622          97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV  176 (269)
Q Consensus        97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql  176 (269)
                      |||+.+++.|++.++.|||+|+.++++++++.+.+++++++.+++|++|          |+||++++||+|+++||++|+
T Consensus        96 ~~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~g~~~~~~----------~~n~~~~~g~~t~a~Ei~~q~  165 (317)
T TIGR02991        96 CMSELVPQNKVDEIRRLGAEVRIVGRSQDDAQEEVERLVADRGLTMLPP----------FDHPDIVAGQGTLGLEVVEQM  165 (317)
T ss_pred             EcCCCCCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHhcCCEeeCC----------CCChHHHhhHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999          899999999999999999999


Q ss_pred             CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCccccccccc--CCCCC
Q psy5622         177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLA--VPLVG  254 (269)
Q Consensus       177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~--~~~~~  254 (269)
                      +++|+||+|+|+||+++|++++||++       .|.++|++|||+++++++.+++.|++...+..+|+++|+.  ++.++
T Consensus       166 ~~~d~vvv~~G~Gg~~~Gi~~~~k~~-------~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~~  238 (317)
T TIGR02991       166 PDLATVLVPLSGGGLASGVAMAVKAA-------RPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDN  238 (317)
T ss_pred             CCCCEEEEEcChhHHHHHHHHHHHHh-------CCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCCC
Confidence            98999999999999999999999999       8999999999999999999999998776556689999884  44456


Q ss_pred             HHHHHHHhhhhcccC
Q psy5622         255 WNAFETAAPLIDKMF  269 (269)
Q Consensus       255 ~~~~~~~~~~~~~~~  269 (269)
                      ..+++.+++++|+++
T Consensus       239 ~~~~~~~~~~vd~~v  253 (317)
T TIGR02991       239 RVTFAMCKALLDEIV  253 (317)
T ss_pred             HHHHHHHHHhCCeEE
Confidence            778999999998764

Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.

>PRK09224 threonine dehydratase; Reviewed

Probab=100.00  E-value=4.9e-52  Score=398.10  Aligned_cols=237  Identities=38%  Similarity=0.575  Sum_probs=223.9

Q ss_pred             eccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCe
Q psy5622          16 VIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPV   94 (269)
Q Consensus        16 ~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~   94 (269)
                      ....++|||++++ |++.+|.+||+|+|++|||||||+|+|.+.+..+.++.+.++||++|+||||+++|++|+++|++|
T Consensus        15 ~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gvV~aSaGNha~avA~aa~~lGi~~   94 (504)
T PRK09224         15 YDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLARGVITASAGNHAQGVALSAARLGIKA   94 (504)
T ss_pred             cCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhcCCEEEEECcCHHHHHHHHHHHHcCCCE
Confidence            3345799999998 999999999999999999999999999999998765666788999999999999999999999999


Q ss_pred             EEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHh
Q psy5622          95 TVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVD  174 (269)
Q Consensus        95 ~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~  174 (269)
                      +||||+.++..|++.++.|||+|+.++++++++.+.+.+++++.+++|+++          |+||.+++|++|++.||++
T Consensus        95 ~IvmP~~tp~~K~~~~r~~GA~Vi~~g~~~~~a~~~a~~l~~~~g~~~v~~----------f~~~~~i~G~gTi~~EI~~  164 (504)
T PRK09224         95 VIVMPVTTPDIKVDAVRAFGGEVVLHGDSFDEAYAHAIELAEEEGLTFIHP----------FDDPDVIAGQGTIAMEILQ  164 (504)
T ss_pred             EEEECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCEEeCC----------CCCcHHHHhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999          8999999999999999999


Q ss_pred             hcCC-CCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCC
Q psy5622         175 QVAN-IDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLV  253 (269)
Q Consensus       175 ql~~-~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~  253 (269)
                      |++. +|+||+|+|+||+++|++.++|.+       .|.+|||||||+++++++.+++.|++...+...|++||++++.+
T Consensus       165 q~~~~~D~vvvpvGgGGliaGia~~lk~~-------~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~  237 (504)
T PRK09224        165 QHPHPLDAVFVPVGGGGLIAGVAAYIKQL-------RPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRI  237 (504)
T ss_pred             hccCCCCEEEEecChhHHHHHHHHHHHHh-------CCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCc
Confidence            9985 999999999999999999999999       99999999999999999999999998777777899999999999


Q ss_pred             CHHHHHHHhhhhcccC
Q psy5622         254 GWNAFETAAPLIDKMF  269 (269)
Q Consensus       254 ~~~~~~~~~~~~~~~~  269 (269)
                      +..+|+.+++++|+++
T Consensus       238 g~~~~~~~~~~vd~~v  253 (504)
T PRK09224        238 GEETFRLCQEYVDDVI  253 (504)
T ss_pred             cHHHHHHHHhcCCeEE
Confidence            9999999999999874

>PRK08639 threonine dehydratase; Validated

Probab=100.00  E-value=3.4e-52  Score=392.01  Aligned_cols=236  Identities=35%  Similarity=0.532  Sum_probs=218.9

Q ss_pred             ccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622          17 IRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT   95 (269)
Q Consensus        17 ~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~   95 (269)
                      ...++|||++++ |++..|.+||+|+|++|||||||||+|.+++.++.++.+.++|+++|+||||+++|++|+++|++|+
T Consensus        21 ~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~~~~Vv~aSsGN~g~alA~~a~~~G~~~~  100 (420)
T PRK08639         21 DVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEELAAGVVCASAGNHAQGVAYACRHLGIPGV  100 (420)
T ss_pred             CcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhhCCEEEEECccHHHHHHHHHHHHcCCCEE
Confidence            345799999998 9988899999999999999999999999999986555556789999999999999999999999999


Q ss_pred             EEEcCCCcHHHHHHHHHcCCEE---EEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHH
Q psy5622          96 VVMPIVAPIMKIQACRRYGATV---IVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEI  172 (269)
Q Consensus        96 ivvp~~~~~~~~~~l~~~Ga~v---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI  172 (269)
                      ||||+.+++.|++.++.|||+|   +..+.+++++.+.+.+++++.+++|++|          |+||.+++||.|+++||
T Consensus       101 IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~g~~~~~~----------~~~~~~~~G~~tig~EI  170 (420)
T PRK08639        101 IFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEETGATFIPP----------FDDPDVIAGQGTVAVEI  170 (420)
T ss_pred             EEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhcCCcccCC----------CCChhHhcchhHHHHHH
Confidence            9999999999999999999974   4456789999999999999999999999          89999999999999999


Q ss_pred             HhhcCC---CCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCccccccccc
Q psy5622         173 VDQVAN---IDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLA  249 (269)
Q Consensus       173 ~~ql~~---~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~  249 (269)
                      ++|++.   ||+||+|+|+||+++|++.++|+.       +|.+++|||||++|++++.+++.|++...+..+|+++|++
T Consensus       171 ~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~-------~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~  243 (420)
T PRK08639        171 LEQLEKEGSPDYVFVPVGGGGLISGVTTYLKER-------SPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAA  243 (420)
T ss_pred             HHhccccCCCCEEEEecChhHHHHHHHHHHHHh-------CCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecccc
Confidence            999984   999999999999999999999999       9999999999999999999999998876666789999999


Q ss_pred             CCCCCHHHHHHHhhhhcccC
Q psy5622         250 VPLVGWNAFETAAPLIDKMF  269 (269)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~  269 (269)
                      ++.++..+|+.+++++|+++
T Consensus       244 v~~~g~~~~~~~~~~vd~~v  263 (420)
T PRK08639        244 VARVGDLTFEILKDVVDDVV  263 (420)
T ss_pred             cCCccHHHHHHHHHhCCeEE
Confidence            99999999999999999864

>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia

Probab=100.00  E-value=1.5e-51  Score=374.47  Aligned_cols=231  Identities=29%  Similarity=0.362  Sum_probs=212.6

Q ss_pred             CCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC--CccEEEeCCChHHHHHHHHHHhcCCCeEEE
Q psy5622          21 WFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK--KKGVISASLGNHAQAMCYHGSRLNIPVTVV   97 (269)
Q Consensus        21 ~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~--~~~vv~~SsGN~g~alA~~a~~~G~~~~iv   97 (269)
                      +|||++++ |.+.+|.+||+|+|++|||||||||++.+++.++.+++.  .++|+++|+||||+|+|++|+.+|++|+||
T Consensus         1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv   80 (316)
T cd06448           1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGLNECVHVVCSSGGNAGLAAAYAARKLGVPCTIV   80 (316)
T ss_pred             CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhcccCCeEEEeCCcHHHHHHHHHHHHcCCCEEEE
Confidence            69999998 888889999999999999999999999999999876553  788999999999999999999999999999


Q ss_pred             EcCCCcHHHHHHHHHcCCEEEEeCCC-HHHHHHHHHHHHhhh-CCeeecCCCCCCccccCCCCcchhccchhHHHHHHhh
Q psy5622          98 MPIVAPIMKIQACRRYGATVIVEGAD-MKEAKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQ  175 (269)
Q Consensus        98 vp~~~~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~q  175 (269)
                      ||+.+++.|++.|+.|||+|+.++++ ++++.+.+++++++. +++|+++          |+||.+++||+++++||++|
T Consensus        81 ~p~~~~~~k~~~l~~~GA~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------~~n~~~~~g~~t~~~Ei~~q  150 (316)
T cd06448          81 VPESTKPRVVEKLRDEGATVVVHGKVWWEADNYLREELAENDPGPVYVHP----------FDDPLIWEGHSSMVDEIAQQ  150 (316)
T ss_pred             ECCCCCHHHHHHHHHcCCEEEEECCchHHHHHHHHHHHHhccCCcEEeCC----------CCCchhhccccHHHHHHHHH
Confidence            99999999999999999999999987 777888888888886 8999999          89999999999999999999


Q ss_pred             cCC---CCEEEEecCcchHHHHHHhHHHHHHhcCCCCC-CCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCC
Q psy5622         176 VAN---IDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVG-LEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVP  251 (269)
Q Consensus       176 l~~---~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~-~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~  251 (269)
                      ++.   ||+||+|+|+||+++|++++|+++       + +++++|+|||++|+++..+++.|++...+..+|+++|+..+
T Consensus       151 ~~~~~~~D~vv~~vG~Gg~~~Gv~~~~k~~-------~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~  223 (316)
T cd06448         151 LQSQEKVDAIVCSVGGGGLLNGIVQGLERN-------GWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAK  223 (316)
T ss_pred             ccccCCCCEEEEEeCchHHHHHHHHHHHhc-------CCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCC
Confidence            974   999999999999999999999998       6 88999999999999999999999875554557999999988


Q ss_pred             CCCHHHHHHHhhhhccc
Q psy5622         252 LVGWNAFETAAPLIDKM  268 (269)
Q Consensus       252 ~~~~~~~~~~~~~~~~~  268 (269)
                      .+++.+|+.+++.+|++
T Consensus       224 ~~~~~~~~~~~~~~~~~  240 (316)
T cd06448         224 TVSSQALEYAQEHNIKS  240 (316)
T ss_pred             CcCHHHHHHHHhcCCeE
Confidence            88888899998887765

>PRK06450 threonine synthase; Validated

Probab=100.00  E-value=4.3e-51  Score=374.05  Aligned_cols=227  Identities=21%  Similarity=0.287  Sum_probs=201.6

Q ss_pred             eeccccCCccccccccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCe
Q psy5622          15 FVIRDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPV   94 (269)
Q Consensus        15 ~~~~~~~TPl~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~   94 (269)
                      ++++||+|||++.+       +||+|+|++|||||||||++.++++++.+ .+.++|+++|+||+|.|+|++|+++|++|
T Consensus        52 vslgeG~TPLv~~~-------~l~~K~E~~nPTGSfKDRga~~~i~~a~~-~g~~~vv~aSsGN~g~slA~~aa~~G~~~  123 (338)
T PRK06450         52 ISLGEGRTPLIKKG-------NIWFKLDFLNPTGSYKDRGSVTLISYLAE-KGIKQISEDSSGNAGASIAAYGAAAGIEV  123 (338)
T ss_pred             CCCCCCCCCceecC-------CEEEEecCCCCcCCCHHHHHHHHHHHHHH-cCCCEEEEECCcHHHHHHHHHHHHcCCCE
Confidence            78999999999853       79999999999999999999999999864 56789999999999999999999999999


Q ss_pred             EEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHh
Q psy5622          95 TVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVD  174 (269)
Q Consensus        95 ~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~  174 (269)
                      +||||+++++.|+++|+.|||+|+.++++++++.+.    +++.+++|+++          +.||++++|++|+++||++
T Consensus       124 ~i~vP~~~~~~k~~~i~~~GA~vi~v~~~~~~~~~~----a~~~g~~~~~~----------~~np~~ieG~kTia~EI~e  189 (338)
T PRK06450        124 KIFVPETASGGKLKQIESYGAEVVRVRGSREDVAKA----AENSGYYYASH----------VLQPQFRDGIRTLAYEIAK  189 (338)
T ss_pred             EEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHH----HHhcCeEeccC----------CCCccHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998886654    55667788888          7899999999999999999


Q ss_pred             hcC--CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCC
Q psy5622         175 QVA--NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPL  252 (269)
Q Consensus       175 ql~--~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~  252 (269)
                      |++  .||+||+|+|+|++++|++++|+++ ...|++++.+|+|+|||+++++++.+++.+++.+.+..+|+++||.+++
T Consensus       190 ql~~~~pD~vvvpvG~Ggll~Gi~~g~~el-~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~  268 (338)
T PRK06450        190 DLDWKIPNYVFIPVSAGTLLLGVYSGFKHL-LDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTR  268 (338)
T ss_pred             HcCCCCCCEEEEECCchHHHHHHHHHHHHH-HhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCC
Confidence            997  5999999999999999999999999 6788888889999999999999999998554444445679999998877


Q ss_pred             CC--HHHHHHHhhh
Q psy5622         253 VG--WNAFETAAPL  264 (269)
Q Consensus       253 ~~--~~~~~~~~~~  264 (269)
                      |.  ..+++.+++.
T Consensus       269 p~~~~~~~~~i~~~  282 (338)
T PRK06450        269 PFLLDYMVKALSEY  282 (338)
T ss_pred             CCCHHHHHHHHHhc
Confidence            64  3456666654

>PRK06815 hypothetical protein; Provisional

Probab=100.00  E-value=7.1e-51  Score=370.38  Aligned_cols=234  Identities=38%  Similarity=0.534  Sum_probs=215.0

Q ss_pred             ccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEE
Q psy5622          19 DQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVV   97 (269)
Q Consensus        19 ~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~iv   97 (269)
                      .++|||++++ |++..|.+||+|+|++|||||||||++.+.+..+.++.+.++++++|+||||+|+|++|+++|++|+||
T Consensus        18 i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~i~   97 (317)
T PRK06815         18 VRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQRQQGVITASSGNHGQGVALAAKLAGIPVTVY   97 (317)
T ss_pred             CCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhcCceEEEECCChHHHHHHHHHHHhCCCEEEE
Confidence            4799999998 888889999999999999999999999999998754545677999999999999999999999999999


Q ss_pred             EcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcC
Q psy5622          98 MPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA  177 (269)
Q Consensus        98 vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~  177 (269)
                      ||+++++.|+..++.+||+|+.++++++++.+.+++++++.+++|+++          |+||..++|++++++||++|++
T Consensus        98 ~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~~g~~t~a~Ei~~q~~  167 (317)
T PRK06815         98 APEQASAIKLDAIRALGAEVRLYGGDALNAELAARRAAEQQGKVYISP----------YNDPQVIAGQGTIGMELVEQQP  167 (317)
T ss_pred             ECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEEecC----------CCChhhhcchhHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999          8899999999999999999999


Q ss_pred             CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCC-CCCHH
Q psy5622         178 NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVP-LVGWN  256 (269)
Q Consensus       178 ~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~-~~~~~  256 (269)
                      .+|+||+|+|+||+++|++.+|+++       .|.++|++|||+++++++.+++.|++.+.+..+|+++|+..+ .++..
T Consensus       168 ~~d~vv~~vG~Gg~~~Gi~~~~k~~-------~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~  240 (317)
T PRK06815        168 DLDAVFVAVGGGGLISGIATYLKTL-------SPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPGAI  240 (317)
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHHh-------CCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcccHH
Confidence            9999999999999999999999999       899999999999999999999999877666677899988544 35667


Q ss_pred             HHHHHhhhhcccC
Q psy5622         257 AFETAAPLIDKMF  269 (269)
Q Consensus       257 ~~~~~~~~~~~~~  269 (269)
                      +++.+++++|+++
T Consensus       241 ~~~~~~~~~~~~~  253 (317)
T PRK06815        241 TFPLCQQLIDQKV  253 (317)
T ss_pred             HHHHHHHhCCeEE
Confidence            7888888888764

>PRK08197 threonine synthase; Validated

Probab=100.00  E-value=7.7e-51  Score=380.11  Aligned_cols=241  Identities=23%  Similarity=0.299  Sum_probs=217.2

Q ss_pred             eeccccCCcccccc-ccccCCC-eEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCC
Q psy5622          15 FVIRDQWFNSKKSH-LSELTKM-EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNI   92 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~~~~g~-~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~   92 (269)
                      +++++|+|||++++ |++.+|. +||+|+|++|||||||||++.+++.++. +.+.++|+++|+||+|+|+|++|+++|+
T Consensus        73 vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~-~~g~~~vv~aSsGN~g~alA~~aa~~G~  151 (394)
T PRK08197         73 VSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAK-ELGVKHLAMPTNGNAGAAWAAYAARAGI  151 (394)
T ss_pred             CccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHH-HcCCCEEEEeCCcHHHHHHHHHHHHcCC
Confidence            78999999999998 9888885 9999999999999999999999999875 5567899999999999999999999999


Q ss_pred             CeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHH
Q psy5622          93 PVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEI  172 (269)
Q Consensus        93 ~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI  172 (269)
                      +|+||||+++++.|+.+++.|||+|+.++++++++.+.+++++++.+++++++          +.||++++|++|+++||
T Consensus       152 ~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~~~~~~~~~a~~~~~~~g~~~~~~----------~~np~~ieG~~t~a~Ei  221 (394)
T PRK08197        152 RATIFMPADAPEITRLECALAGAELYLVDGLISDAGKIVAEAVAEYGWFDVST----------LKEPYRIEGKKTMGLEL  221 (394)
T ss_pred             cEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCcccccC----------CCCccchhcHHHHHHHH
Confidence            99999999999999999999999999999999999999999998889888888          88999999999999999


Q ss_pred             HhhcC--CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCC-CCcEEEEEcCCCChHHHHHHHcCCCCC--CCCccccccc
Q psy5622         173 VDQVA--NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVG-LEIVDQGVESDRCASFSTAIKHGKPTP--VSVQPTLADG  247 (269)
Q Consensus       173 ~~ql~--~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~-~~~~vigVe~~~~~~~~~~~~~g~~~~--~~~~~t~a~g  247 (269)
                      ++|++  .||+||+|+|+|++++|++++|+++ ...|++. +.+++++|||+++++++++++.|....  ....+|+++|
T Consensus       222 ~eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~-~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~g  300 (394)
T PRK08197        222 AEQLGWRLPDVILYPTGGGVGLIGIWKAFDEL-EALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFG  300 (394)
T ss_pred             HHHcCCCCCCEEEEeCCChHHHHHHHHHHHHH-HHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehh
Confidence            99997  4999999999999999999999998 6788885 889999999999999999999886543  2345789999


Q ss_pred             ccCCCCC--HHHHHHHhhhhcc
Q psy5622         248 LAVPLVG--WNAFETAAPLIDK  267 (269)
Q Consensus       248 l~~~~~~--~~~~~~~~~~~~~  267 (269)
                      +.++.+.  ..+++.+++..++
T Consensus       301 l~~~~~~~~~~~~~~~~~~~g~  322 (394)
T PRK08197        301 IRVPKALGDFLVLDAVRETGGC  322 (394)
T ss_pred             hhCCCCCCHHHHHHHHHHhCCE
Confidence            9888763  3566777665443

>PRK07591 threonine synthase; Validated

Probab=100.00  E-value=1.2e-50  Score=381.27  Aligned_cols=242  Identities=22%  Similarity=0.312  Sum_probs=217.2

Q ss_pred             eeccccCCcccccc-ccccCCC-eEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCC
Q psy5622          15 FVIRDQWFNSKKSH-LSELTKM-EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNI   92 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~~~~g~-~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~   92 (269)
                      +++++|+|||++++ |++.+|. +||+|+|++|||||||||++.+++.++. +.+.++|+++|+||||+|+|++|+++|+
T Consensus        83 v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~-~~g~~~vv~aSsGN~g~alA~~aa~~Gl  161 (421)
T PRK07591         83 VDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAAR-ELGFTTVACASTGNLANSVAAHAARAGL  161 (421)
T ss_pred             CcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHH-HcCCCEEEEeCCCHHHHHHHHHHHHcCC
Confidence            78999999999998 9998995 9999999999999999999999999875 5567889999999999999999999999


Q ss_pred             CeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhh-CCeeecCCCCCCccccCCCCcchhccchhHHHH
Q psy5622          93 PVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLE  171 (269)
Q Consensus        93 ~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~E  171 (269)
                      +|+||||+++++.|+.+++.|||+|+.++++++++.+.+++++++. +++|+++          +.||+.++|++|+++|
T Consensus       162 ~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g~~d~a~~~a~~~~~~~~~~~~~n~----------~~~p~~ieG~~Tia~E  231 (421)
T PRK07591        162 DSCVFIPADLEAGKIVGTLVYGPTLVAVDGNYDDVNRLCSELANEHEGWGFVNI----------NLRPYYAEGSKTLGYE  231 (421)
T ss_pred             CEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEEecC----------CCCcccccchHHHHHH
Confidence            9999999999999999999999999999999999999999999887 7888887          7799999999999999


Q ss_pred             HHhhcC--CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCC-CCcEEEEEcCCCChHHHHHHHcCCCCCCC-Cccccccc
Q psy5622         172 IVDQVA--NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVG-LEIVDQGVESDRCASFSTAIKHGKPTPVS-VQPTLADG  247 (269)
Q Consensus       172 I~~ql~--~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~-~~~~vigVe~~~~~~~~~~~~~g~~~~~~-~~~t~a~g  247 (269)
                      |++|++  .||+||+|+|+||+++|++++|+++ ...|++. +.+|+++|||+++++++++++.|.....+ ..+|++++
T Consensus       232 i~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel-~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~  310 (421)
T PRK07591        232 VAEQLGWRLPDQVVAPLASGSLLTKIDKGFQEL-IKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKS  310 (421)
T ss_pred             HHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHH-HhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhh
Confidence            999997  4999999999999999999999998 6788886 77999999999999999999998754333 25799999


Q ss_pred             ccCCCC--CHHHHHHHhhhhccc
Q psy5622         248 LAVPLV--GWNAFETAAPLIDKM  268 (269)
Q Consensus       248 l~~~~~--~~~~~~~~~~~~~~~  268 (269)
                      +.++.|  ...+++.+++..+++
T Consensus       311 l~~~~p~~~~~~~~~i~~~~g~~  333 (421)
T PRK07591        311 LAIGNPADGPYALDIARRTGGAI  333 (421)
T ss_pred             eecCCCCCcHHHHHHHHHhCCEE
Confidence            977665  446677777655543

>PRK07334 threonine dehydratase; Provisional

Probab=100.00  E-value=1.3e-50  Score=379.50  Aligned_cols=233  Identities=39%  Similarity=0.647  Sum_probs=215.1

Q ss_pred             cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622          18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV   96 (269)
Q Consensus        18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i   96 (269)
                      ..++|||++++ |++.+|.+||+|+|++|||||||||++.+++.++.++.+.++|+++|+||||+|+|++|+++|++|+|
T Consensus        20 ~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~i   99 (403)
T PRK07334         20 QVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEERARGVIAMSAGNHAQGVAYHAQRLGIPATI   99 (403)
T ss_pred             CCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHhCCcEEEECCcHHHHHHHHHHHHcCCCEEE
Confidence            45899999998 98888999999999999999999999999999876555667799999999999999999999999999


Q ss_pred             EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622          97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV  176 (269)
Q Consensus        97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql  176 (269)
                      |||+++++.|+++++.|||+|+.++++++++.+.+++++++.+++|+++          |+||.+++||+|+++||++|+
T Consensus       100 v~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~a~~l~~~~~~~~~~~----------~~~~~~~~g~~t~~~Ei~~q~  169 (403)
T PRK07334        100 VMPRFTPTVKVERTRGFGAEVVLHGETLDEARAHARELAEEEGLTFVHP----------YDDPAVIAGQGTVALEMLEDA  169 (403)
T ss_pred             EECCCCCHHHHHHHHHcCCEEEEECcCHHHHHHHHHHHHHhcCCEecCC----------CCCHHHHHhHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999          899999999999999999999


Q ss_pred             CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHH
Q psy5622         177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN  256 (269)
Q Consensus       177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~  256 (269)
                      +.+|+||+|+|+||+++|++++||++       +|.+++++|||+++++++.+++.+...  ...+|+++||.++.++..
T Consensus       170 ~~~d~vv~~vG~GG~~~Gi~~~lk~~-------~~~~~vi~ve~~~~~~~~~~~~~~~~~--~~~~~~~~gi~~~~~~~~  240 (403)
T PRK07334        170 PDLDTLVVPIGGGGLISGMATAAKAL-------KPDIEIIGVQTELYPSMYAAIKGVALP--CGGSTIAEGIAVKQPGQL  240 (403)
T ss_pred             CCCCEEEEecCHHHHHHHHHHHHHHh-------CCCCEEEEEEECCCchHHHHHhCCCcc--CCCCCccceecCCCccHH
Confidence            99999999999999999999999999       999999999999999999988654322  235689999999989999


Q ss_pred             HHHHHhhhhcccC
Q psy5622         257 AFETAAPLIDKMF  269 (269)
Q Consensus       257 ~~~~~~~~~~~~~  269 (269)
                      ++..+++++|+++
T Consensus       241 ~~~~~~~~~d~~v  253 (403)
T PRK07334        241 TLEIVRRLVDDIL  253 (403)
T ss_pred             HHHHHHHhCCeEE
Confidence            9999999988764

>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia

Probab=100.00  E-value=1.5e-50  Score=376.52  Aligned_cols=238  Identities=23%  Similarity=0.215  Sum_probs=209.6

Q ss_pred             eccccCCcccccc-ccccCC--------CeEEEEeCCCCC-CCchhhHHHHHHHHhch-----HhcC-------------
Q psy5622          16 VIRDQWFNSKKSH-LSELTK--------MEIFLKKDFFQV-TGSFKERGACYALLMLS-----EDQK-------------   67 (269)
Q Consensus        16 ~~~~~~TPl~~~~-l~~~~g--------~~i~~K~E~~np-tGS~K~R~a~~~l~~~~-----~~~~-------------   67 (269)
                      ++++++|||++++ |++.+|        .+||+|+|++|| |||||||++.+++..+.     +.+.             
T Consensus        47 ~~~~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~  126 (404)
T cd06447          47 SHGIIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASE  126 (404)
T ss_pred             cCCccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhh
Confidence            3568999999998 887665        699999999999 99999999999987532     1111             


Q ss_pred             -------CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhh-C
Q psy5622          68 -------KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAEL-G  139 (269)
Q Consensus        68 -------~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~-~  139 (269)
                             ..+||++|+||||+|+|++|+.+|++|+||||+++++.|++.|+.|||+|+.++++++++.+.+++++++. +
T Consensus       127 ~~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~~~~~a~~~a~~la~~~~~  206 (404)
T cd06447         127 KFRKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYETDYSKAVEEGRKQAAADPM  206 (404)
T ss_pred             hhhhcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCC
Confidence                   24899999999999999999999999999999999999999999999999999999999999999999987 4


Q ss_pred             CeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcC----C-----CCEEEEecCcchHHHHHHhHHHHHHhcCCCCC
Q psy5622         140 LTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA----N-----IDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVG  210 (269)
Q Consensus       140 ~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~----~-----~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~  210 (269)
                      ++|+++          ++++..++||+|+++||++|++    .     ||+||+|+|+||+++|++++||++.      .
T Consensus       207 ~~~v~~----------~n~~~~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~------~  270 (404)
T cd06447         207 CYFVDD----------ENSRDLFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIF------G  270 (404)
T ss_pred             eEeCCC----------CCchhHHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhc------C
Confidence            677777          7788899999999999999996    3     4589999999999999999999862      6


Q ss_pred             CCcEEEEEcCCCChHHHHHHHcCCCCCCC------CcccccccccCCCCCHHHHHHHhhhhcccC
Q psy5622         211 LEIVDQGVESDRCASFSTAIKHGKPTPVS------VQPTLADGLAVPLVGWNAFETAAPLIDKMF  269 (269)
Q Consensus       211 ~~~~vigVe~~~~~~~~~~~~~g~~~~~~------~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~  269 (269)
                      |.++||+|||++++++..+++.|.+.+..      ..+|++|||.++.++..+|+.+++++|+++
T Consensus       271 p~~kVigVeP~~ap~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v  335 (404)
T cd06447         271 DNVHCFFAEPTHSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIY  335 (404)
T ss_pred             CCCEEEEEccCCChHHHHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEE
Confidence            78999999999999998899988765432      257999999999999999999999999864

D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.

>PRK08813 threonine dehydratase; Provisional

Probab=100.00  E-value=1.8e-50  Score=369.91  Aligned_cols=224  Identities=34%  Similarity=0.522  Sum_probs=206.2

Q ss_pred             cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622          18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV   96 (269)
Q Consensus        18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i   96 (269)
                      ..++|||++++ +      +||+|+|++|||||||||++.+++..+.+++..++||++|+||||+|+|++|+.+|++|+|
T Consensus        36 ~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~~~VV~aSsGN~G~alA~aa~~~Gi~~~I  109 (349)
T PRK08813         36 YLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGDERPVICASAGNHAQGVAWSAYRLGVQAIT  109 (349)
T ss_pred             cCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCCCeEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence            45799999976 4      4999999999999999999999999987776666899999999999999999999999999


Q ss_pred             EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622          97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV  176 (269)
Q Consensus        97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql  176 (269)
                      |||+++++.|+++++.|||+|+.++++++++.+.+++++++.+++|+++          |+||++++||+|+++||++|.
T Consensus       110 vvP~~~~~~K~~~i~~~GAeVv~~g~~~~~a~~~a~~la~~~g~~~v~~----------~~np~~i~G~~Tig~EI~e~~  179 (349)
T PRK08813        110 VMPHGAPQTKIAGVAHWGATVRQHGNSYDEAYAFARELADQNGYRFLSA----------FDDPDVIAGQGTVGIELAAHA  179 (349)
T ss_pred             EEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEcCc----------cCChHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999999          899999999999999999984


Q ss_pred             CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHH
Q psy5622         177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN  256 (269)
Q Consensus       177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~  256 (269)
                        ||+||+|+|+||+++|++.++|+.         .++||+|||+++++++.+++ |.+...+..+|++||+.++.++..
T Consensus       180 --pD~VvvpvGgGGliaGia~~lk~~---------~~rVigVqpega~~~~~s~~-g~~~~~~~~~tiadgl~~~~p~~~  247 (349)
T PRK08813        180 --PDVVIVPIGGGGLASGVALALKSQ---------GVRVVGAQVEGVDSMARAIR-GDLREIAPVATLADGVKVKIPGFL  247 (349)
T ss_pred             --CCEEEEEeCccHHHHHHHHHHhcC---------CCEEEEEEECCCchHHHHHc-CCCcccCCCCceecccccCCcchh
Confidence              899999999999999999999854         58999999999999999997 665544445799999999888899


Q ss_pred             HHHHHhhhhcccC
Q psy5622         257 AFETAAPLIDKMF  269 (269)
Q Consensus       257 ~~~~~~~~~~~~~  269 (269)
                      ++..+++++|+++
T Consensus       248 ~~~i~~~~vd~vv  260 (349)
T PRK08813        248 TRRLCSSLLDDVV  260 (349)
T ss_pred             HHHHHHHhCCeEE
Confidence            9999999998864

>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen

Probab=100.00  E-value=3e-50  Score=363.85  Aligned_cols=234  Identities=45%  Similarity=0.677  Sum_probs=217.7

Q ss_pred             cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622          18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV   96 (269)
Q Consensus        18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i   96 (269)
                      ..++|||++++ |++.+|.+||+|+|++|||||||||++.+++.++.++++.++|+++|+||||.|+|++|+++|++|++
T Consensus        14 ~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~~~~iv~~ssGN~g~alA~~a~~~G~~~~i   93 (304)
T cd01562          14 VVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEERAKGVVAASAGNHAQGVAYAAKLLGIPATI   93 (304)
T ss_pred             cCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence            45899999998 98888999999999999999999999999999987666577899999999999999999999999999


Q ss_pred             EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622          97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV  176 (269)
Q Consensus        97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql  176 (269)
                      |+|++.++.|+++|+.+||+|+.++++++++.+.+++++++.+++|+++          ++|+..++|++++++||++|+
T Consensus        94 vvp~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~a~~la~~~~~~~~~~----------~~n~~~~~g~~~~~~Ei~~q~  163 (304)
T cd01562          94 VMPETAPAAKVDATRAYGAEVVLYGEDFDEAEAKARELAEEEGLTFIHP----------FDDPDVIAGQGTIGLEILEQV  163 (304)
T ss_pred             EECCCCCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHhcCCEEeCC----------CCCcchhccHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999          889999999999999999999


Q ss_pred             CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHH
Q psy5622         177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN  256 (269)
Q Consensus       177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~  256 (269)
                      +.||+||+|+|+||+++|++++||++       .+.+|+|+|||.++++++.+++.|...+.+..+|+++|++++.++..
T Consensus       164 ~~~d~vv~~vGtGgt~~Gi~~~lk~~-------~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~  236 (304)
T cd01562         164 PDLDAVFVPVGGGGLIAGIATAVKAL-------SPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGEL  236 (304)
T ss_pred             CCCCEEEEecCHHHHHHHHHHHHHHh-------CCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCCchHH
Confidence            88999999999999999999999998       89999999999999999999999887666556899999998888887


Q ss_pred             HHHHHhhhhccc
Q psy5622         257 AFETAAPLIDKM  268 (269)
Q Consensus       257 ~~~~~~~~~~~~  268 (269)
                      .++..++++|++
T Consensus       237 ~~~~~~~~~~~~  248 (304)
T cd01562         237 TFEIIRKLVDDV  248 (304)
T ss_pred             HHHHHHHhCCeE
Confidence            788888877765

Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.

>PRK08246 threonine dehydratase; Provisional

Probab=100.00  E-value=6.3e-50  Score=363.04  Aligned_cols=230  Identities=35%  Similarity=0.475  Sum_probs=211.1

Q ss_pred             ccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622          17 IRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT   95 (269)
Q Consensus        17 ~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~   95 (269)
                      ...++|||++++ +... +.+||+|+|++|||||||||++.+++.++.+  +.++|+++|+||||+|+|++|+++|++|+
T Consensus        19 ~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~--~~~~vv~aSsGN~g~a~A~~a~~~G~~~~   95 (310)
T PRK08246         19 PHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV--PAAGVVAASGGNAGLAVAYAAAALGVPAT   95 (310)
T ss_pred             CcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc--cCCeEEEeCCCHHHHHHHHHHHHcCCCEE
Confidence            345899999998 7765 7899999999999999999999999988643  67789999999999999999999999999


Q ss_pred             EEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhh
Q psy5622          96 VVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQ  175 (269)
Q Consensus        96 ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~q  175 (269)
                      ||||+.+++.|+.+++.|||+|+.++++++++.+.+.+++++.+++|+++          |+||++++||+++++||++|
T Consensus        96 iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~g~~~~~~----------~~n~~~i~g~~t~~~Ei~eq  165 (310)
T PRK08246         96 VFVPETAPPAKVARLRALGAEVVVVGAEYADALEAAQAFAAETGALLCHA----------YDQPEVLAGAGTLGLEIEEQ  165 (310)
T ss_pred             EEECCCCcHHHHHHHHHCCCEEEEeCCCHHHHHHHHHHHHHhcCCEeCCC----------CCChhhhcchHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999889999999          89999999999999999999


Q ss_pred             cCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCH
Q psy5622         176 VANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGW  255 (269)
Q Consensus       176 l~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~  255 (269)
                      ++.||+||+|+|+||+++|++.+|+          +.+++++|||+++++++.+|+.|++.+.+...+.++++..+.++.
T Consensus       166 ~~~~D~iv~~vG~GG~~~Gi~~~~~----------~~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~~  235 (310)
T PRK08246        166 APGVDTVLVAVGGGGLIAGIAAWFE----------GRARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGE  235 (310)
T ss_pred             cCCCCEEEEecCccHHHHHHHHHhc----------CCCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCccH
Confidence            9999999999999999999999984          248999999999999999999998877666667788888888888


Q ss_pred             HHHHHHhhhhcccC
Q psy5622         256 NAFETAAPLIDKMF  269 (269)
Q Consensus       256 ~~~~~~~~~~~~~~  269 (269)
                      .+|+.+++++|+++
T Consensus       236 ~~~~~~~~~~~~~~  249 (310)
T PRK08246        236 IAFALARAHVVTSV  249 (310)
T ss_pred             HHHHHHHhcCCeEE
Confidence            99999999988764

>PRK02991 D-serine dehydratase; Provisional

Probab=100.00  E-value=1.9e-50  Score=379.93  Aligned_cols=239  Identities=23%  Similarity=0.203  Sum_probs=211.6

Q ss_pred             eeccccCCcccccc-ccccCC--------CeEEEEeCCCCC-CCchhhHHHHHHHHhchH----hcC-------------
Q psy5622          15 FVIRDQWFNSKKSH-LSELTK--------MEIFLKKDFFQV-TGSFKERGACYALLMLSE----DQK-------------   67 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~~~~g--------~~i~~K~E~~np-tGS~K~R~a~~~l~~~~~----~~~-------------   67 (269)
                      .++++++|||++++ |++.+|        .+||+|+|++|| |||||||++.+++..+.+    +.+             
T Consensus        69 ~~~~~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~  148 (441)
T PRK02991         69 ATGGIIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLAS  148 (441)
T ss_pred             ccCCccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcc
Confidence            35678999999998 887665        699999999999 999999999999876422    111             


Q ss_pred             --------CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhh-
Q psy5622          68 --------KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAEL-  138 (269)
Q Consensus        68 --------~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~-  138 (269)
                              ..+||++|+||||+|+|++|+.+|++|+||||+++++.|++.|+.|||+|+.++++++++.+.+++++++. 
T Consensus       149 ~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~~~~~a~~~A~~la~~~~  228 (441)
T PRK02991        149 PEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEGDYGVAVEEGRKAAESDP  228 (441)
T ss_pred             hhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcC
Confidence                    13799999999999999999999999999999999999999999999999999999999999999999887 


Q ss_pred             CCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcC----C-----CCEEEEecCcchHHHHHHhHHHHHHhcCCCC
Q psy5622         139 GLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA----N-----IDAIVVPVGGGGLIAGVAYDHPDIMAGQGTV  209 (269)
Q Consensus       139 ~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~----~-----~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~  209 (269)
                      +++|+++          ++++..++||+|+++||++|++    .     ||+||+|+|+||+++|++.+||++.      
T Consensus       229 ~~~~~~~----------~~~~~~iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~------  292 (441)
T PRK02991        229 NCYFIDD----------ENSRTLFLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAF------  292 (441)
T ss_pred             CeEeCCC----------CCchhHHHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhc------
Confidence            4777888          7888999999999999999996    2     6689999999999999999999872      


Q ss_pred             CCCcEEEEEcCCCChHHHHHHHcCCCCCCC------CcccccccccCCCCCHHHHHHHhhhhcccC
Q psy5622         210 GLEIVDQGVESDRCASFSTAIKHGKPTPVS------VQPTLADGLAVPLVGWNAFETAAPLIDKMF  269 (269)
Q Consensus       210 ~~~~~vigVe~~~~~~~~~~~~~g~~~~~~------~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~  269 (269)
                      .+.+++|+|||+++++++.+++.|++...+      ...|+++||+++.++..+|+.+++++|+++
T Consensus       293 ~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v  358 (441)
T PRK02991        293 GDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVY  358 (441)
T ss_pred             CCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEE
Confidence            578999999999999999999999864332      246999999999999999999999998864

>KOG1251|consensus

Probab=100.00  E-value=9.7e-51  Score=344.87  Aligned_cols=234  Identities=36%  Similarity=0.549  Sum_probs=225.3

Q ss_pred             ccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEE
Q psy5622          19 DQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVV   97 (269)
Q Consensus        19 ~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~iv   97 (269)
                      ...||.+.++ |.+..|.+||+|+|.+|.+||||.|+|.+.++.+..+++.+.+++.||||||+|+|++|+.+|+|++|+
T Consensus        23 ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~~kgvithSSGNHaqAlalaAk~~giPa~IV  102 (323)
T KOG1251|consen   23 IHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKRAKGVITHSSGNHAQALALAAKILGIPATIV  102 (323)
T ss_pred             hccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhhcCceEeecCCcHHHHHHHHHHhcCCCeEEE
Confidence            3589999998 999999999999999999999999999999999987889999999999999999999999999999999


Q ss_pred             EcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcC
Q psy5622          98 MPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA  177 (269)
Q Consensus        98 vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~  177 (269)
                      ||.++|..|+..++.|||+|++++...+++.+.++++.++.+.+.+++          |++|..++|+.|++.|+++|.+
T Consensus       103 vP~~AP~~Kv~a~~~Yga~ii~~e~~~~sRE~va~~ltee~g~~~i~P----------y~~p~vIaGqgTiA~ElleqVg  172 (323)
T KOG1251|consen  103 VPKDAPICKVAATRGYGANIIFCEPTVESRESVAKDLTEETGYYLIHP----------YNHPSVIAGQGTIALELLEQVG  172 (323)
T ss_pred             ecCCChHHHHHHHHhcCceEEEecCccchHHHHHHHHHHhcCcEEeCC----------CCCcceeeccchHHHHHHHhhC
Confidence            999999999999999999999999888899999999999999999999          9999999999999999999999


Q ss_pred             CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHHH
Q psy5622         178 NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNA  257 (269)
Q Consensus       178 ~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~  257 (269)
                      .+|++|+|+|+||+++|++.+.+.+       .|.++|++|||++.+.-++++..|.....+..+|||||......++.+
T Consensus       173 ~iDalfvpvgGGGllSgvAlaa~~l-------~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~lG~~t  245 (323)
T KOG1251|consen  173 EIDALFVPVGGGGLLSGVALAAKSL-------KPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSHLGPLT  245 (323)
T ss_pred             ccceEEEeecCcchhhHHHHHHhcc-------CCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhccccccc
Confidence            9999999999999999999999999       999999999999999999999999988888889999999988799999


Q ss_pred             HHHHhhhhcccC
Q psy5622         258 FETAAPLIDKMF  269 (269)
Q Consensus       258 ~~~~~~~~~~~~  269 (269)
                      |+++|+++||++
T Consensus       246 ~pIir~~vddi~  257 (323)
T KOG1251|consen  246 WPIIRDLVDDIL  257 (323)
T ss_pred             hHHHHHHhhhhe
Confidence            999999999985

>PRK06260 threonine synthase; Validated

Probab=100.00  E-value=1.4e-49  Score=372.00  Aligned_cols=241  Identities=22%  Similarity=0.284  Sum_probs=214.4

Q ss_pred             ceeccccCCcccccc-ccccCCC-eEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcC
Q psy5622          14 GFVIRDQWFNSKKSH-LSELTKM-EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLN   91 (269)
Q Consensus        14 ~~~~~~~~TPl~~~~-l~~~~g~-~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G   91 (269)
                      .+++++|+|||++++ |++.+|. +||+|+|++|||||||||++.+++.++. +.+.++|+++|+||+|+|+|++|+++|
T Consensus        60 ~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~-~~g~~~vv~aSsGN~g~alA~~aa~~G  138 (397)
T PRK06260         60 IVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKAL-ELGVKTVACASTGNTSASLAAYAARAG  138 (397)
T ss_pred             cccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHH-HcCCCEEEEeCCcHHHHHHHHHHHHcC
Confidence            477999999999998 9888898 9999999999999999999999999986 455679999999999999999999999


Q ss_pred             CCeEEEEcCC-CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHH
Q psy5622          92 IPVTVVMPIV-APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGL  170 (269)
Q Consensus        92 ~~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~  170 (269)
                      ++|+||||++ +++.|+.+++.|||+|+.++++++++.+.+++++++.+++++++          + ||++++||+|+++
T Consensus       139 ~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~~~~~~~~~a~~~~~~~g~y~~~~----------~-np~~~~G~~t~a~  207 (397)
T PRK06260        139 LKCYVLLPAGKVALGKLAQALLHGAKVLEVDGNFDDALDMVVELAKEGKIYLLNS----------I-NPFRLEGQKTIGF  207 (397)
T ss_pred             CcEEEEEeCCCccHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhCCEEeecC----------C-CchhhcchhhHHH
Confidence            9999999997 78999999999999999999999999999999999888777776          5 8999999999999


Q ss_pred             HHHhhcC--CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCC--CCCcccccc
Q psy5622         171 EIVDQVA--NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTP--VSVQPTLAD  246 (269)
Q Consensus       171 EI~~ql~--~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~--~~~~~t~a~  246 (269)
                      ||++|++  .||+||+|+|+||+++|++++|+++ ...|++.+.+|+|+|||++++++.++++.|....  ....+|+++
T Consensus       208 Ei~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l-~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~  286 (397)
T PRK06260        208 EIADQLGWEVPDRVVLPVGNAGNISAIWKGFKEL-VELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVAT  286 (397)
T ss_pred             HHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHH-HhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceee
Confidence            9999997  6999999999999999999999998 6678887778999999999999999999887642  334679999


Q ss_pred             cccCCCCC--HHHHHHHhhhhcc
Q psy5622         247 GLAVPLVG--WNAFETAAPLIDK  267 (269)
Q Consensus       247 gl~~~~~~--~~~~~~~~~~~~~  267 (269)
                      ++.++.|.  ..+++.+++..++
T Consensus       287 ~i~i~~p~~~~~~~~~l~~~~g~  309 (397)
T PRK06260        287 AIRIGNPVNAPKALRAIRESGGT  309 (397)
T ss_pred             eeEeCCCCCHHHHHHHHHHHCCE
Confidence            99876553  4456666665544

>PLN02569 threonine synthase

Probab=100.00  E-value=2.3e-49  Score=376.38  Aligned_cols=229  Identities=23%  Similarity=0.207  Sum_probs=208.6

Q ss_pred             eeccccCCcccccc-cccc-CCC-eEEEEeCCCCCCCchhhHHHHHHHHhchHhcC----CccEEEeCCChHHHHHHHHH
Q psy5622          15 FVIRDQWFNSKKSH-LSEL-TKM-EIFLKKDFFQVTGSFKERGACYALLMLSEDQK----KKGVISASLGNHAQAMCYHG   87 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~~~-~g~-~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~----~~~vv~~SsGN~g~alA~~a   87 (269)
                      +++++|+|||++++ |.+. +|+ +||+|+|++|||||||||++..++..+.+.+.    ...|+++|+||+|.|+|++|
T Consensus       127 vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAaya  206 (484)
T PLN02569        127 VSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYC  206 (484)
T ss_pred             eecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHH
Confidence            78999999999998 8887 886 89999999999999999999999998754332    26799999999999999999


Q ss_pred             HhcCCCeEEEEcCC-CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccch
Q psy5622          88 SRLNIPVTVVMPIV-APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQG  166 (269)
Q Consensus        88 ~~~G~~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~  166 (269)
                      +++|++|+||||++ .+..|+.+++.|||+|+.++++++++.+.+++++++.+++++++          + ||++++||+
T Consensus       207 a~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g~~d~a~~~a~e~~~~~~~~~~n~----------~-Np~~ieG~k  275 (484)
T PLN02569        207 AAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDTDFDGCMRLIREVTAELPIYLANS----------L-NSLRLEGQK  275 (484)
T ss_pred             HhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHHcCCEecCC----------C-CcchhHhHH
Confidence            99999999999997 78899999999999999999999999999999998888888888          6 999999999


Q ss_pred             hHHHHHHhhcC--CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCC--CCCCCcc
Q psy5622         167 TVGLEIVDQVA--NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKP--TPVSVQP  242 (269)
Q Consensus       167 t~~~EI~~ql~--~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~--~~~~~~~  242 (269)
                      |+++||++|++  .||+||+|+|+||+++|++++|+++ ...|++.+.+|+++|||++|++++++|+.|..  .+....+
T Consensus       276 T~a~EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel-~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~  354 (484)
T PLN02569        276 TAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMC-KELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANP  354 (484)
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHH-HHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCC
Confidence            99999999998  3999999999999999999999998 78899888899999999999999999999864  3334467


Q ss_pred             cccccccCCCCCH
Q psy5622         243 TLADGLAVPLVGW  255 (269)
Q Consensus       243 t~a~gl~~~~~~~  255 (269)
                      |++++|.++.|..
T Consensus       355 T~A~gi~i~~P~~  367 (484)
T PLN02569        355 TFASAIQIGDPVS  367 (484)
T ss_pred             ccchhhccCCCcc
Confidence            9999999887765

>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase

Probab=100.00  E-value=2e-49  Score=371.73  Aligned_cols=238  Identities=21%  Similarity=0.179  Sum_probs=207.3

Q ss_pred             eccccCCcccccc-ccccC--------CCeEEEEeCCCCC-CCchhhHHHHHHHHhch-----HhcC-------------
Q psy5622          16 VIRDQWFNSKKSH-LSELT--------KMEIFLKKDFFQV-TGSFKERGACYALLMLS-----EDQK-------------   67 (269)
Q Consensus        16 ~~~~~~TPl~~~~-l~~~~--------g~~i~~K~E~~np-tGS~K~R~a~~~l~~~~-----~~~~-------------   67 (269)
                      ++++++|||++++ +++.+        +.+||+|+|++|| |||||||++.+++..+.     +.+.             
T Consensus        65 ~~~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~  144 (431)
T TIGR02035        65 TGGIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEK  144 (431)
T ss_pred             cCCccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcch
Confidence            3478899999998 88744        5699999999999 99999999999987531     2221             


Q ss_pred             -------CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhC-
Q psy5622          68 -------KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELG-  139 (269)
Q Consensus        68 -------~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~-  139 (269)
                             ..+|+++|+||||+|+|++|+.+|++|+||||+++++.|++.++.|||+|+.++++++++.+.+++++++.+ 
T Consensus       145 ~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~~~~~a~~~A~~la~~~~~  224 (431)
T TIGR02035       145 KFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYESDYGVAVEEGRKNADADPM  224 (431)
T ss_pred             hhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCC
Confidence                   247999999999999999999999999999999999999999999999999999999999999999999875 


Q ss_pred             CeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcC---------CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCC
Q psy5622         140 LTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA---------NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVG  210 (269)
Q Consensus       140 ~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~---------~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~  210 (269)
                      .+|+++          ++.+..++||+|++.||++|++         .||+|++|+|+||+++|++++||++.      +
T Consensus       225 ~~~~d~----------~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~------~  288 (431)
T TIGR02035       225 CYFVDD----------ENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAF------G  288 (431)
T ss_pred             eEECCC----------CCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhc------C
Confidence            455666          4445567999999999999994         46799999999999999999999963      6


Q ss_pred             CCcEEEEEcCCCChHHHHHHHcCCCCCCC------CcccccccccCCCCCHHHHHHHhhhhcccC
Q psy5622         211 LEIVDQGVESDRCASFSTAIKHGKPTPVS------VQPTLADGLAVPLVGWNAFETAAPLIDKMF  269 (269)
Q Consensus       211 ~~~~vigVe~~~~~~~~~~~~~g~~~~~~------~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~  269 (269)
                      |++++|+|||++++++..+++.|......      ...|++|||+++.|+..+++.+++++|+++
T Consensus       289 ~~vkvi~VEp~~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv  353 (431)
T TIGR02035       289 DNVHCFFAEPTHSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIY  353 (431)
T ss_pred             CCCEEEEEeeCCCHHHHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhCCeEE
Confidence            78999999999999999999988754322      236999999999999999999999999864

This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.

>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate

Probab=100.00  E-value=3.7e-49  Score=360.02  Aligned_cols=243  Identities=25%  Similarity=0.313  Sum_probs=215.7

Q ss_pred             cceeccccCCcccccc-ccccCC-CeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhc
Q psy5622          13 LGFVIRDQWFNSKKSH-LSELTK-MEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRL   90 (269)
Q Consensus        13 ~~~~~~~~~TPl~~~~-l~~~~g-~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~   90 (269)
                      ..+.+++|+|||++++ |++..| .+||+|+|++|||||||||++.+++.++.+ .+.++|+++|+||||+|+|++|+.+
T Consensus        14 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~-~g~~~vv~~SsGN~g~alA~~a~~~   92 (324)
T cd01563          14 DIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKE-LGVKAVACASTGNTSASLAAYAARA   92 (324)
T ss_pred             CcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHH-cCCCEEEEeCCCHHHHHHHHHHHHc
Confidence            4478899999999998 888776 699999999999999999999999999864 4578999999999999999999999


Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHH
Q psy5622          91 NIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGL  170 (269)
Q Consensus        91 G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~  170 (269)
                      |++|++|||+++++.|++.|+.+||+|+.++++++++.+.+++++++. ++|+++          ++||.+++||.+++.
T Consensus        93 G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~~~~~~~~~a~~~~~~~-~~~~~~----------~~n~~~~~g~~t~~~  161 (324)
T cd01563          93 GIKCVVFLPAGKALGKLAQALAYGATVLAVEGNFDDALRLVRELAEEN-WIYLSN----------SLNPYRLEGQKTIAF  161 (324)
T ss_pred             CCceEEEEeCCCCHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHhc-CeeccC----------CCCcceecchhhhHH
Confidence            999999999999999999999999999999999999999999999887 888998          899999999999999


Q ss_pred             HHHhhcC--CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCC--CCCCCcccccc
Q psy5622         171 EIVDQVA--NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKP--TPVSVQPTLAD  246 (269)
Q Consensus       171 EI~~ql~--~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~--~~~~~~~t~a~  246 (269)
                      ||++|++  .+|+||+|+|+||+++|++.++|++ ...|..++.++||+|||.++++++.+++.|.+  ...+..+|+++
T Consensus       162 Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~-~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~  240 (324)
T cd01563         162 EIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKEL-KELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIAT  240 (324)
T ss_pred             HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHH-HhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceee
Confidence            9999997  6999999999999999999999997 44555567899999999999999999998865  33445679999


Q ss_pred             cccCCCCC--HHHHHHHhhhhccc
Q psy5622         247 GLAVPLVG--WNAFETAAPLIDKM  268 (269)
Q Consensus       247 gl~~~~~~--~~~~~~~~~~~~~~  268 (269)
                      |+.++.+.  ...++.++++.|++
T Consensus       241 gl~~~~~~~~~~~~~~~~~~~~~~  264 (324)
T cd01563         241 AIRIGNPASGPKALRAVRESGGTA  264 (324)
T ss_pred             eeecCCCCCHHHHHHHHHHhCCEE
Confidence            99877654  34566676666654

It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.

>PRK06608 threonine dehydratase; Provisional

Probab=100.00  E-value=2.4e-49  Score=362.82  Aligned_cols=231  Identities=32%  Similarity=0.419  Sum_probs=208.7

Q ss_pred             cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC-CccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622          18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK-KKGVISASLGNHAQAMCYHGSRLNIPVT   95 (269)
Q Consensus        18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~-~~~vv~~SsGN~g~alA~~a~~~G~~~~   95 (269)
                      ..++|||++++ |++.+|++||+|+|++|||||||||++.+++.++.+++. .++|+++|+||||+|+|++|+++|++|+
T Consensus        20 ~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~~vv~~SsGN~g~alA~~a~~~G~~~~   99 (338)
T PRK06608         20 YLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLPDKIVAYSTGNHGQAVAYASKLFGIKTR   99 (338)
T ss_pred             cCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcCCeEEEECCCHHHHHHHHHHHHcCCCEE
Confidence            45899999998 999899999999999999999999999999999875544 3789999999999999999999999999


Q ss_pred             EEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhh
Q psy5622          96 VVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQ  175 (269)
Q Consensus        96 ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~q  175 (269)
                      +|||+++++.|+++++.|||+|+.++. .+++.+.+++ +++.+++|+++          ++|+.+++|++++++||++|
T Consensus       100 vv~p~~~~~~k~~~l~~~GA~V~~~~~-~~~~~~~a~~-~~~~~~~~~~~----------~~~~~~~~g~~t~a~Ei~~q  167 (338)
T PRK06608        100 IYLPLNTSKVKQQAALYYGGEVILTNT-RQEAEEKAKE-DEEQGFYYIHP----------SDSDSTIAGAGTLCYEALQQ  167 (338)
T ss_pred             EEECCCCCHHHHHHHHhCCCEEEEECC-HHHHHHHHHH-HHhCCCEEcCC----------CCCHHHhccHHHHHHHHHHh
Confidence            999999999999999999999999975 4677777777 66678899999          88999999999999999999


Q ss_pred             cC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCC-CcccccccccCCCC
Q psy5622         176 VA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVS-VQPTLADGLAVPLV  253 (269)
Q Consensus       176 l~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~-~~~t~a~gl~~~~~  253 (269)
                      ++ .||+||+|+|+||+++|+++++|+.       ++.+++|+|||.++++++.+++.|++.... ..+|+++|+.++.+
T Consensus       168 ~~~~~D~vv~~vG~GGt~~Gi~~~~k~~-------~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~~  240 (338)
T PRK06608        168 LGFSPDAIFASCGGGGLISGTYLAKELI-------SPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSV  240 (338)
T ss_pred             cCCCcCEEEEeechhHHHHHHHHHHHhc-------CCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCCC
Confidence            98 8999999999999999999999988       899999999999999999999999765432 34789999999888


Q ss_pred             CHHHHHHHhhhhccc
Q psy5622         254 GWNAFETAAPLIDKM  268 (269)
Q Consensus       254 ~~~~~~~~~~~~~~~  268 (269)
                      +..+|+.+++ +|++
T Consensus       241 ~~~~~~~~~~-~d~~  254 (338)
T PRK06608        241 SARTFEYLKK-LDDF  254 (338)
T ss_pred             CHHHHHHHHh-CCCE
Confidence            8888888776 5665

>PRK05638 threonine synthase; Validated

Probab=100.00  E-value=4.6e-49  Score=373.03  Aligned_cols=234  Identities=22%  Similarity=0.219  Sum_probs=209.9

Q ss_pred             eeccccCCccccccccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCe
Q psy5622          15 FVIRDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPV   94 (269)
Q Consensus        15 ~~~~~~~TPl~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~   94 (269)
                      +++++|+|||+++++++.+|.+||+|+|++|||||||||++.+++.++. +.+.++|+++|+||+|+|+|++|+++|++|
T Consensus        60 v~l~~G~TPLv~~~~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~-~~g~~~vv~aSsGN~g~alA~~aa~~G~~~  138 (442)
T PRK05638         60 ISLGEGGTPLIRARISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGL-PYAANGFIVASDGNAAASVAAYSARAGKEA  138 (442)
T ss_pred             cccCCCCCcEEcccchHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHH-HcCCCEEEEeCCChHHHHHHHHHHHcCCCE
Confidence            6789999999998876678889999999999999999999999999886 456788999999999999999999999999


Q ss_pred             EEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHh
Q psy5622          95 TVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVD  174 (269)
Q Consensus        95 ~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~  174 (269)
                      +||||+++++.|+.+++.|||+|+.++++++++.+.+++++++.+++++++          ++||++++|++|+++||++
T Consensus       139 ~i~vp~~~~~~k~~~~~~~GA~vi~v~~~~~~~~~~a~~~~~~~~~~~~~~----------~~np~~~eG~~t~a~Ei~e  208 (442)
T PRK05638        139 FVVVPRKVDKGKLIQMIAFGAKIIRYGESVDEAIEYAEELARLNGLYNVTP----------EYNIIGLEGQKTIAFELWE  208 (442)
T ss_pred             EEEEeCCCCHHHHHHHHhcCcEEEEECCCHHHHHHHHHHHHHhCCeEecCC----------CCChhHhhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998888888998          8899999999999999999


Q ss_pred             hcCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCC
Q psy5622         175 QVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVG  254 (269)
Q Consensus       175 ql~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~  254 (269)
                      |++ ||+||+|+|+||+++|++++|+++ ...|++...+++++|||++++++..+++.+...   ...|+++|+.++.|.
T Consensus       209 q~~-pD~vv~pvG~Gg~~~Gi~~gfkel-~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~~---~~~t~a~gl~~~~p~  283 (442)
T PRK05638        209 EIN-PTHVIVPTGSGSYLYSIYKGFKEL-LEIGVIEEIPKLIAVQTERCNPIASEILGNKTK---CNETKALGLYVKNPV  283 (442)
T ss_pred             HHC-cCEEEEeCCchHHHHHHHHHHHHH-HhCCcccCCCeEEEEecCCCCHHHHHHhcCCCC---CCCceeeeEeeCCCC
Confidence            998 999999999999999999999998 566777777899999999999999999876433   346889998766553


Q ss_pred             --HHHHHHHhhh
Q psy5622         255 --WNAFETAAPL  264 (269)
Q Consensus       255 --~~~~~~~~~~  264 (269)
                        ..+++.+++.
T Consensus       284 ~~~~~~~~i~~~  295 (442)
T PRK05638        284 MKEYVSEAIKES  295 (442)
T ss_pred             CHHHHHHHHHHh
Confidence              3455666554

>PRK08329 threonine synthase; Validated

Probab=100.00  E-value=1.7e-48  Score=358.60  Aligned_cols=226  Identities=24%  Similarity=0.320  Sum_probs=201.7

Q ss_pred             eeccccCCccccccccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCe
Q psy5622          15 FVIRDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPV   94 (269)
Q Consensus        15 ~~~~~~~TPl~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~   94 (269)
                      ++++||.|||+++      +.+||+|+|++|||||||||++.+++.++. +.+.++|+++|+||+|+|+|++|+++|++|
T Consensus        58 ~sl~eg~Tpl~~~------~~~l~~K~E~~nPtGSfKdRga~~~i~~a~-~~g~~~vv~aSsGN~g~alA~~aa~~G~~~  130 (347)
T PRK08329         58 PHLTPPITPTVKR------SIKVYFKLDYLQPTGSFKDRGTYVTVAKLK-EEGINEVVIDSSGNAALSLALYSLSEGIKV  130 (347)
T ss_pred             CcCCCCCCccccC------CCeEEEEeCCCCCCcCCHHHHHHHHHHHHH-HcCCCEEEEECCCcHHHHHHHHHHHcCCcE
Confidence            6899999999985      458999999999999999999999999986 455689999999999999999999999999


Q ss_pred             EEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHh
Q psy5622          95 TVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVD  174 (269)
Q Consensus        95 ~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~  174 (269)
                      +||||+++++.|+.+++.|||+|+.++++++++.+.+++++++.+++|+++          +.||++++|++|+++||++
T Consensus       131 ~v~vp~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~a~~l~~~~~~~~~~~----------~~np~~~eG~~t~~~Ei~e  200 (347)
T PRK08329        131 HVFVSYNASKEKISLLSRLGAELHFVEGDRMEVHEEAVKFSKRNNIPYVSH----------WLNPYFLEGTKTIAYEIYE  200 (347)
T ss_pred             EEEECCCChHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCeeccC----------CCCchhhccchhHHHHHHH
Confidence            999999999999999999999999999888888889999999888888888          7899999999999999999


Q ss_pred             hcCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCC
Q psy5622         175 QVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVG  254 (269)
Q Consensus       175 ql~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~  254 (269)
                      |++.||+||+|+|+|++++|++++|+++ ...|.+++.+|+++|||+++.++...+        ...+|+++|+.++.|.
T Consensus       201 ql~~pD~vvvpvG~Gg~l~Gi~~g~kel-~~~g~i~~~p~ii~Vq~~g~~~~~~~~--------~~~~t~a~gi~i~~~~  271 (347)
T PRK08329        201 QIGVPDYAFVPVGSGTLFLGIWKGFKEL-HEMGEISKMPKLVAVQAEGYESLCKRS--------KSENKLADGIAIPEPP  271 (347)
T ss_pred             HcCCCCEEEEeCCcHHHHHHHHHHHHHH-HhcCCCCCCCEEEEEecCCCchHHhcc--------CCCCceeeeEEeCCCC
Confidence            9999999999999999999999999998 667888888999999999999886421        1346899999888764


Q ss_pred             H--HHHHHHhhhhc
Q psy5622         255 W--NAFETAAPLID  266 (269)
Q Consensus       255 ~--~~~~~~~~~~~  266 (269)
                      .  .+++.+++..+
T Consensus       272 ~~~~~~~~l~~~~g  285 (347)
T PRK08329        272 RKEEMLRALEESNG  285 (347)
T ss_pred             CHHHHHHHHHHhCC
Confidence            3  35666666544

>PRK08206 diaminopropionate ammonia-lyase; Provisional

Probab=100.00  E-value=1.3e-48  Score=365.08  Aligned_cols=242  Identities=21%  Similarity=0.257  Sum_probs=211.1

Q ss_pred             cccCCcccccc-ccccCCC-eEEEEeCCC-CCCCchhhHHHHHHHHhchHhcCC----------------------ccEE
Q psy5622          18 RDQWFNSKKSH-LSELTKM-EIFLKKDFF-QVTGSFKERGACYALLMLSEDQKK----------------------KGVI   72 (269)
Q Consensus        18 ~~~~TPl~~~~-l~~~~g~-~i~~K~E~~-nptGS~K~R~a~~~l~~~~~~~~~----------------------~~vv   72 (269)
                      ..++|||++++ |++.+|+ +||+|+|++ |||||||||++.+.+..+..+...                      .+|+
T Consensus        41 ~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv  120 (399)
T PRK08206         41 GYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKLGDITFA  120 (399)
T ss_pred             CCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHHhccCCEEE
Confidence            34699999998 9999994 999999997 599999999999888876532211                      2599


Q ss_pred             EeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCcc
Q psy5622          73 SASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLS  152 (269)
Q Consensus        73 ~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  152 (269)
                      ++|+||||+|+|++|+.+|++|+||||+++++.|+..|+.|||+|+.++++++++.+.+.+++++.+++|+++     ..
T Consensus       121 ~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~~~~~~~~~a~~~~~~~g~~~v~~-----~~  195 (399)
T PRK08206        121 TATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDGNYDDSVRLAAQEAQENGWVVVQD-----TA  195 (399)
T ss_pred             EeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHHcCCEEecC-----cc
Confidence            9999999999999999999999999999999999999999999999999999999999999999989888863     12


Q ss_pred             ccCCCC--cchhccchhHHHHHHhhcCC----CCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622         153 VLGYDH--PDIMAGQGTVGLEIVDQVAN----IDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF  226 (269)
Q Consensus       153 ~~g~~n--~~~~~g~~t~~~EI~~ql~~----~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~  226 (269)
                      |.+|+|  +..++||+|+++||++|++.    ||+||+|+|+||+++|++.+++++.     ..+.+++|+|||++++++
T Consensus       196 ~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~-----~~~~~kii~Vep~gs~~l  270 (399)
T PRK08206        196 WEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVY-----GEQRPHFVVVEPDQADCL  270 (399)
T ss_pred             ccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHc-----CCCCCEEEEECCCCCchH
Confidence            233765  66899999999999999974    9999999999999999999999881     024799999999999999


Q ss_pred             HHHHHcCCCCCCCC-cccccccccCCCCCHHHHHHHhhhhcccC
Q psy5622         227 STAIKHGKPTPVSV-QPTLADGLAVPLVGWNAFETAAPLIDKMF  269 (269)
Q Consensus       227 ~~~~~~g~~~~~~~-~~t~a~gl~~~~~~~~~~~~~~~~~~~~~  269 (269)
                      +++++.|++...+. .+|+++|+.++.|+..+|+.+++++|+++
T Consensus       271 ~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v  314 (399)
T PRK08206        271 YQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFI  314 (399)
T ss_pred             HHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEE
Confidence            99999998765443 36899999999999999999999998764

>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family

Probab=100.00  E-value=3.4e-48  Score=359.24  Aligned_cols=239  Identities=19%  Similarity=0.254  Sum_probs=210.5

Q ss_pred             cCCcccccc-ccccCCC-eEEEEeCCCCC-CCchhhHHHHHHHHhchHhc----------------------CCccEEEe
Q psy5622          20 QWFNSKKSH-LSELTKM-EIFLKKDFFQV-TGSFKERGACYALLMLSEDQ----------------------KKKGVISA   74 (269)
Q Consensus        20 ~~TPl~~~~-l~~~~g~-~i~~K~E~~np-tGS~K~R~a~~~l~~~~~~~----------------------~~~~vv~~   74 (269)
                      .+|||++++ |++.+|. +||+|+|++|+ |||||+|++.+.+..+.++.                      +..+|+++
T Consensus        21 ~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~a  100 (376)
T TIGR01747        21 RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQATFATA  100 (376)
T ss_pred             CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCEEEEE
Confidence            499999998 9999995 99999999985 89999999999998874421                      25689999


Q ss_pred             CCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCcccc
Q psy5622          75 SLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVL  154 (269)
Q Consensus        75 SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  154 (269)
                      |+||||+|+|++|+.+|++|+||||+++++.|+..|+.|||+|+.++++++++.+.+++++++.+++++++     ..+.
T Consensus       101 SsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~~~~~a~~~a~~~~~~~g~~~~~~-----~~~~  175 (376)
T TIGR01747       101 TDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDMNYDDTVRLAMQMAQQHGWVVVQD-----TAWE  175 (376)
T ss_pred             CccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCcEEecc-----cccc
Confidence            99999999999999999999999999999999999999999999999999999999999999888888763     1223


Q ss_pred             CCCC--cchhccchhHHHHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCC-CcEEEEEcCCCChHH
Q psy5622         155 GYDH--PDIMAGQGTVGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGL-EIVDQGVESDRCASF  226 (269)
Q Consensus       155 g~~n--~~~~~g~~t~~~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~-~~~vigVe~~~~~~~  226 (269)
                      +|+|  |+.++||+|+++||++|++     .||+||+|+|+||+++|++.++++..      .+ .+++++|||++++++
T Consensus       176 ~~~~~~~~ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~------~~~~p~vi~Vep~ga~~~  249 (376)
T TIGR01747       176 GYEKIPTWIMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVY------SENNPHSIVVEPDKADCL  249 (376)
T ss_pred             ccccCCchHHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhc------CCCCCEEEEEeeCCCCHH
Confidence            3655  7789999999999999996     69999999999999999999998772      33 379999999999999


Q ss_pred             HHHHHc--CCCCCCCC-cccccccccCCCCCHHHHHHHhhhhcccC
Q psy5622         227 STAIKH--GKPTPVSV-QPTLADGLAVPLVGWNAFETAAPLIDKMF  269 (269)
Q Consensus       227 ~~~~~~--g~~~~~~~-~~t~a~gl~~~~~~~~~~~~~~~~~~~~~  269 (269)
                      +++++.  |++.+.+. .+|+++||.++.|+..+|+.+++.+++++
T Consensus       250 ~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v  295 (376)
T TIGR01747       250 YQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFI  295 (376)
T ss_pred             HHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEE
Confidence            999977  77666553 57999999999999999999999988764

This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).

>PRK06381 threonine synthase; Validated

Probab=100.00  E-value=9.2e-48  Score=350.24  Aligned_cols=207  Identities=20%  Similarity=0.229  Sum_probs=191.8

Q ss_pred             cccCCcccccc-ccccCC-CeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622          18 RDQWFNSKKSH-LSELTK-MEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT   95 (269)
Q Consensus        18 ~~~~TPl~~~~-l~~~~g-~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~   95 (269)
                      ..|+|||++++ |++.+| .+||+|+|++|||||||||++.+++.++. +.+.++|+++|+||||+|+|++|+.+|++|+
T Consensus        12 ~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~-~~g~~~lv~aSsGN~g~alA~~aa~~G~~~~   90 (319)
T PRK06381         12 PPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAM-RLGYSGITVGTCGNYGASIAYFARLYGLKAV   90 (319)
T ss_pred             cCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHH-HcCCCEEEEeCCcHHHHHHHHHHHHcCCcEE
Confidence            36899999998 998888 49999999999999999999999999985 5567899999999999999999999999999


Q ss_pred             EEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCC-Cc-chhccchhHHHHHH
Q psy5622          96 VVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYD-HP-DIMAGQGTVGLEIV  173 (269)
Q Consensus        96 ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~-n~-~~~~g~~t~~~EI~  173 (269)
                      ||||..++..|+++|+.|||+|+.++++++++.+.+++++++.+++++++          ++ || .+++||+++++||+
T Consensus        91 ivvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~n~~~~~~G~~t~a~Ei~  160 (319)
T PRK06381         91 IFIPRSYSNSRVKEMEKYGAEIIYVDGKYEEAVERSRKFAKENGIYDANP----------GSVNSVVDIEAYSAIAYEIY  160 (319)
T ss_pred             EEECCCCCHHHHHHHHHcCCEEEEcCCCHHHHHHHHHHHHHHcCcEecCC----------CCCCcchHhhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999998888888877          54 76 58999999999999


Q ss_pred             hhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCC
Q psy5622         174 DQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPT  236 (269)
Q Consensus       174 ~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~  236 (269)
                      +|++ .||+||+|+|+||+++|++++|+++ ...|.++|.+++++|||.+++++..+++.|...
T Consensus       161 ~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~-~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~  223 (319)
T PRK06381        161 EALGDVPDAVAVPVGNGTTLAGIYHGFRRL-YDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSE  223 (319)
T ss_pred             HHhCCCCCEEEEcCCccHHHHHHHHHHHHH-HhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCc
Confidence            9998 7999999999999999999999998 577888899999999999999999999988755

>PRK06352 threonine synthase; Validated

Probab=100.00  E-value=8.8e-48  Score=354.36  Aligned_cols=231  Identities=23%  Similarity=0.277  Sum_probs=198.9

Q ss_pred             ceeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCC
Q psy5622          14 GFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNI   92 (269)
Q Consensus        14 ~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~   92 (269)
                      .+++++|+|||++++ |++.+|++||+|+|++|||||||||++.+++.++. +.+.++||++|+||||+|+|++|+.+|+
T Consensus        21 ~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~-~~g~~~vV~aSsGN~G~AlA~~aa~~G~   99 (351)
T PRK06352         21 MISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAK-EEGAEAVICASTGNTSAAAAAYATRAGL   99 (351)
T ss_pred             ccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHH-HCCCCEEEEECCcHHHHHHHHHHHHcCC
Confidence            488999999999998 88888899999999999999999999999999986 4556799999999999999999999999


Q ss_pred             CeEEEEcCC-CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHH
Q psy5622          93 PVTVVMPIV-APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLE  171 (269)
Q Consensus        93 ~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~E  171 (269)
                      +|+||||++ .++.|+++|+.|||+|+.++++++++.+.+++++++.++++.++           .||++++||+++++|
T Consensus       100 ~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~n~~~~~G~~t~~~E  168 (351)
T PRK06352        100 KAYIVIPEGKVALGKLAQAVMYGADIISIQGNFDEALKSVRELAETEAVTLVNS-----------VNPYRLEGQKTAAFE  168 (351)
T ss_pred             cEEEEEeCCCCcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCcccccC-----------CCccceeeHHHHHHH
Confidence            999999998 58999999999999999999999999999999998877655554           599999999999999


Q ss_pred             HHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccC
Q psy5622         172 IVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAV  250 (269)
Q Consensus       172 I~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~  250 (269)
                      |++|++ .||+||+|+|+||+++|++++||++ ...+ +.+.+++|+|||++++++.    .|++..  ..+|+++++.+
T Consensus       169 I~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~-~~~~-~~~~~~vi~Vep~g~~~~~----~g~~~~--~~~~ia~~l~~  240 (351)
T PRK06352        169 ICEQLGSAPDVLAIPVGNAGNISAYWKGFKEW-NEAK-ASGLPRMHGFEAEGAAAIV----QGKPID--NPETIATAIRI  240 (351)
T ss_pred             HHHHcCCCCCEEEEECCchHHHHHHHHHHHHH-HhcC-CCCCCEEEEEeeCCCCHHH----hCCCcC--CCCcceeEEEe
Confidence            999998 7999999999999999999999998 2222 3455999999999998764    455543  34678888876


Q ss_pred             CCCCHHHHHHHhhhhc
Q psy5622         251 PLVGWNAFETAAPLID  266 (269)
Q Consensus       251 ~~~~~~~~~~~~~~~~  266 (269)
                      +.+..  |..+.+.+|
T Consensus       241 ~~~~~--~~~~~~~~d  254 (351)
T PRK06352        241 GNPAS--WGLAEAARD  254 (351)
T ss_pred             CCCCc--HHHHHHHHH
Confidence            65433  455444444

>PLN03013 cysteine synthase

Probab=100.00  E-value=1.3e-47  Score=357.33  Aligned_cols=195  Identities=16%  Similarity=0.160  Sum_probs=178.9

Q ss_pred             eeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---C-ccEEEeCCChHHHHHHHHHHh
Q psy5622          15 FVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---K-KGVISASLGNHAQAMCYHGSR   89 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~-~~vv~~SsGN~g~alA~~a~~   89 (269)
                      +...+|+|||++++ +.+..+++||+|+|++|||||||||+|.++|.++.+++.   . ++||++|+||+|+|+|++|+.
T Consensus       117 i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~  196 (429)
T PLN03013        117 VSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAAS  196 (429)
T ss_pred             HHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence            45678999999998 888778899999999999999999999999999866553   2 469999999999999999999


Q ss_pred             cCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHhhh-CCeeecCCCCCCccccCCCCcchh-ccc
Q psy5622          90 LNIPVTVVMPIVAPIMKIQACRRYGATVIVEGAD--MKEAKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHPDIM-AGQ  165 (269)
Q Consensus        90 ~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~~~~-~g~  165 (269)
                      +|++|+||||+++++.|+++|+.|||+|+.++++  ++++.+.+++++++. +++|++|          |+||.++ +||
T Consensus       197 ~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~q----------y~Np~n~~ah~  266 (429)
T PLN03013        197 RGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQ----------FDNPANPKIHY  266 (429)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCC----------CCCHHHHHHHH
Confidence            9999999999999999999999999999999854  568888999998885 6788888          9999986 599


Q ss_pred             hhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622         166 GTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF  226 (269)
Q Consensus       166 ~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~  226 (269)
                      +++++||++|++ ++|+||+|+|+||+++|+++++|+.       .|+++||+|||++++++
T Consensus       267 ~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~-------~P~vkVigVep~gs~~l  321 (429)
T PLN03013        267 ETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEK-------NPKTQVIGVEPTESDIL  321 (429)
T ss_pred             HHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhh-------CCCCEEEEEEeCCCchh
Confidence            999999999997 8999999999999999999999999       99999999999999887

>PLN02565 cysteine synthase

Probab=100.00  E-value=9.8e-48  Score=350.02  Aligned_cols=196  Identities=18%  Similarity=0.178  Sum_probs=178.0

Q ss_pred             ceeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC----CccEEEeCCChHHHHHHHHHH
Q psy5622          14 GFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK----KKGVISASLGNHAQAMCYHGS   88 (269)
Q Consensus        14 ~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~----~~~vv~~SsGN~g~alA~~a~   88 (269)
                      .+...+++|||++++ +....+.+||+|+|++|||||||||+|.+++..+.+++.    .++||++|+||||+|+|++|+
T Consensus         8 ~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~   87 (322)
T PLN02565          8 DVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAA   87 (322)
T ss_pred             hHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHH
Confidence            456678999999988 766566799999999999999999999999999875543    245999999999999999999


Q ss_pred             hcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHhhh-CCeeecCCCCCCccccCCCCcch-hcc
Q psy5622          89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA--DMKEAKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHPDI-MAG  164 (269)
Q Consensus        89 ~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~~~-~~g  164 (269)
                      .+|++|+||||+++++.|+++|+.|||+|+.++.  +++++.+.+++++++. ++++++|          |+||.+ ..|
T Consensus        88 ~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q----------~~n~~n~~~~  157 (322)
T PLN02565         88 AKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQ----------FENPANPKIH  157 (322)
T ss_pred             HcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecc----------cCCHhHHHHH
Confidence            9999999999999999999999999999999985  4578889999998876 7888898          888865 578


Q ss_pred             chhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622         165 QGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF  226 (269)
Q Consensus       165 ~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~  226 (269)
                      |+|+++||++|++ .||+||+|+|+||+++|++++||++       +|.+|+|+|||++|+++
T Consensus       158 ~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~-------~p~~kvi~Vep~~s~~~  213 (322)
T PLN02565        158 YETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQ-------NPDIKLYGVEPVESAVL  213 (322)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHh-------CCCCEEEEEecCCCccc
Confidence            9999999999997 8999999999999999999999999       99999999999999887

>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase

Probab=100.00  E-value=2e-47  Score=356.27  Aligned_cols=239  Identities=22%  Similarity=0.287  Sum_probs=207.9

Q ss_pred             cCCcccccc-ccccCC-CeEEEEeCCCCC-CCchhhHHHHHHHHhchH-----------------h-c----CCccEEEe
Q psy5622          20 QWFNSKKSH-LSELTK-MEIFLKKDFFQV-TGSFKERGACYALLMLSE-----------------D-Q----KKKGVISA   74 (269)
Q Consensus        20 ~~TPl~~~~-l~~~~g-~~i~~K~E~~np-tGS~K~R~a~~~l~~~~~-----------------~-~----~~~~vv~~   74 (269)
                      .+|||++++ |++.+| .+||+|+|++|+ |||||+|++.+.+.++.+                 + .    ...+||++
T Consensus        40 ~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv~a  119 (396)
T TIGR03528        40 QPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFVTA  119 (396)
T ss_pred             cCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEEEE
Confidence            499999998 999999 499999999885 999999999999987522                 1 0    12379999


Q ss_pred             CCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCcccc
Q psy5622          75 SLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVL  154 (269)
Q Consensus        75 SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  154 (269)
                      |+||||+|+|++|+++|++|+||||+++++.|+..|+.|||+|+.++++++++.+.+++++++.+++|+++     ..+.
T Consensus       120 SsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~~~~~a~~~a~~~a~~~g~~~v~~-----~~~~  194 (396)
T TIGR03528       120 TDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDLNYDDAVRLAWKMAQENGWVMVQD-----TAWE  194 (396)
T ss_pred             CccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCcEeecc-----cccc
Confidence            99999999999999999999999999999999999999999999999999999999999999888888763     1112


Q ss_pred             CCCC--cchhccchhHHHHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCC-cEEEEEcCCCChHH
Q psy5622         155 GYDH--PDIMAGQGTVGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLE-IVDQGVESDRCASF  226 (269)
Q Consensus       155 g~~n--~~~~~g~~t~~~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~-~~vigVe~~~~~~~  226 (269)
                      +|+|  +..++||+|+++||++|++     .||+||+|+|+||+++|++.++++.+      .+. +++++|||++++++
T Consensus       195 ~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~------~~~~p~vi~Vep~~a~~l  268 (396)
T TIGR03528       195 GYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAY------GEERPITVIVEPDAADCL  268 (396)
T ss_pred             ccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhc------CCCCCEEEEEccCCCchH
Confidence            3665  6678999999999999997     69999999999999999999997662      444 59999999999999


Q ss_pred             HHHHHc--CCCCCCC-CcccccccccCCCCCHHHHHHHhhhhcccC
Q psy5622         227 STAIKH--GKPTPVS-VQPTLADGLAVPLVGWNAFETAAPLIDKMF  269 (269)
Q Consensus       227 ~~~~~~--g~~~~~~-~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~  269 (269)
                      +.+++.  |++...+ ..+|+++|+.++.|+..+|+.+++++|+++
T Consensus       269 ~~s~~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v  314 (396)
T TIGR03528       269 YRSAIADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFI  314 (396)
T ss_pred             HHHHHhcCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEE
Confidence            999987  6665554 457999999999999999999999998864

Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.

>PRK06721 threonine synthase; Reviewed

Probab=100.00  E-value=7.7e-47  Score=348.31  Aligned_cols=236  Identities=22%  Similarity=0.266  Sum_probs=201.0

Q ss_pred             cceeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcC
Q psy5622          13 LGFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLN   91 (269)
Q Consensus        13 ~~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G   91 (269)
                      +.+++.+|+|||++++ |++..|.+||+|+|++|||||||||++.+++.++. +.+.++||++|+||||+|+|++|+++|
T Consensus        20 ~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~-~~g~~~vV~aSsGN~G~alA~~aa~~G   98 (352)
T PRK06721         20 PDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAK-EEGSEAIICASTGNTSASAAAYAARLG   98 (352)
T ss_pred             CccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHH-HCCCCEEEEECCcHHHHHHHHHHHHCC
Confidence            3478899999999998 88888899999999999999999999999999985 555789999999999999999999999


Q ss_pred             CCeEEEEcCCC-cHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHH
Q psy5622          92 IPVTVVMPIVA-PIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGL  170 (269)
Q Consensus        92 ~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~  170 (269)
                      ++|+||||+.. ++.|+++|+.+||+|+.++++++++.+.+++++++.++++.++           .||.+++||.++++
T Consensus        99 ~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~n~~~~~G~~t~~~  167 (352)
T PRK06721         99 MKCIIVIPEGKIAHGKLAQAVAYGAEIISIEGNFDDALKAVRNIAAEEPITLVNS-----------VNPYRIEGQKTAAF  167 (352)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhCCceeccC-----------CCchhhhhhhhHHH
Confidence            99999999974 7889999999999999999999999999999999888776654           68999999999999


Q ss_pred             HHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCccccccccc
Q psy5622         171 EIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLA  249 (269)
Q Consensus       171 EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~  249 (269)
                      ||++|++ .||+||+|+|+||+++|++.++.++.+..|  .|.+++|+|||++++++.    .|...  ...+|+++++.
T Consensus       168 Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~--~~~~~vigVep~~~~~~~----~g~~~--~~~~tia~~l~  239 (352)
T PRK06721        168 EICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKG--YKKPRIHGFEAEGAAAIV----KGHVI--DEPETIATAIR  239 (352)
T ss_pred             HHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcC--CCCCeEEEEecCCCChHh----hCCcC--CCCCceeeccc
Confidence            9999997 799999999999999998777765533332  388999999999998865    34433  23568899988


Q ss_pred             CCCCCHHH--HHHHhhhhccc
Q psy5622         250 VPLVGWNA--FETAAPLIDKM  268 (269)
Q Consensus       250 ~~~~~~~~--~~~~~~~~~~~  268 (269)
                      ++.+....  ++.+++++|++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~  260 (352)
T PRK06721        240 IGNPASWSYAVEAAEQSHGEI  260 (352)
T ss_pred             cCCCCCHHHHHHHHHhcCCEE
Confidence            77665432  44456666654

>PRK07409 threonine synthase; Validated

Probab=100.00  E-value=7.6e-47  Score=348.63  Aligned_cols=223  Identities=24%  Similarity=0.307  Sum_probs=195.8

Q ss_pred             ceeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCC
Q psy5622          14 GFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNI   92 (269)
Q Consensus        14 ~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~   92 (269)
                      .+++++|+|||++++ |++.+|.+||+|+|++|||||||||++.+++.++. +.+..+||++|+||||+++|++|+.+|+
T Consensus        24 ~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~-~~g~~~iv~aSsGN~g~alA~~a~~~G~  102 (353)
T PRK07409         24 VVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAK-EEGAKAVICASTGNTSASAAAYAARAGL  102 (353)
T ss_pred             cccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHH-HCCCCEEEEECCcHHHHHHHHHHHHcCC
Confidence            478999999999998 88888899999999999999999999999999986 4456799999999999999999999999


Q ss_pred             CeEEEEcCC-CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHH
Q psy5622          93 PVTVVMPIV-APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLE  171 (269)
Q Consensus        93 ~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~E  171 (269)
                      +|+||||++ .++.|+++++.|||+|+.++++++++.+.+++++++.+++++++           .||.+++||.|+++|
T Consensus       103 ~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~l~~~~~~~~~~~-----------~n~~~~~g~~t~~~E  171 (353)
T PRK07409        103 KAFVLIPEGKIALGKLAQAVMYGAEIIQIDGNFDDALEIVRELAEKYPVTLVNS-----------VNPYRIEGQKTAAFE  171 (353)
T ss_pred             CEEEEEcCCCCchhhHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCceecCC-----------CCchhhhhHHHHHHH
Confidence            999999998 68899999999999999999999999999999998888666655           599999999999999


Q ss_pred             HHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccC
Q psy5622         172 IVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAV  250 (269)
Q Consensus       172 I~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~  250 (269)
                      |++|++ .||+||+|+|+||+++|++.+|+++ ...|...+.+|+|+|||.+++++.    .|++..  ...|+++++.+
T Consensus       172 I~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~-~~~~~~~~~~kvigVep~g~~~~~----~g~~~~--~~~ti~~~l~~  244 (353)
T PRK07409        172 IVDALGDAPDYHCIPVGNAGNITAYWKGYKEY-HQDGKSTKLPRMMGFQAAGAAPIV----RGEPVK--NPETIATAIRI  244 (353)
T ss_pred             HHHHhCCCCCEEEEeCCChHHHHHHHHHHHHH-HHcCCccCCCeEEEEecCCCChHh----hCCcCC--CCcceeeeeec
Confidence            999997 7999999999999999999999987 334444556999999999998875    355443  24688888876


Q ss_pred             CCCCH
Q psy5622         251 PLVGW  255 (269)
Q Consensus       251 ~~~~~  255 (269)
                      +.+..
T Consensus       245 ~~~~~  249 (353)
T PRK07409        245 GNPAS  249 (353)
T ss_pred             CCCCC
Confidence            65554

>PLN02356 phosphateglycerate kinase

Probab=100.00  E-value=6.4e-47  Score=352.53  Aligned_cols=234  Identities=22%  Similarity=0.201  Sum_probs=190.1

Q ss_pred             eeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHHHhc
Q psy5622          15 FVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSRL   90 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a~~~   90 (269)
                      +...+|+|||++++ |+...|.+||+|+|++|||||||||+|.+++.++.+++.   ..+|+++||||||+|+|++|+.+
T Consensus        47 ~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~VveaSSGN~g~alA~~aa~~  126 (423)
T PLN02356         47 LIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAISLATVAPAY  126 (423)
T ss_pred             HHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCEEEEeCCHHHHHHHHHHHHHc
Confidence            33456999999998 988889999999999999999999999999999865442   34677799999999999999999


Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC-------CHH-HHH---HHHHHHHhh----------------------
Q psy5622          91 NIPVTVVMPIVAPIMKIQACRRYGATVIVEGA-------DMK-EAK---NIALKKGAE----------------------  137 (269)
Q Consensus        91 G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~-------~~~-~~~---~~a~~~~~~----------------------  137 (269)
                      |++|+||||+++++.|+++|+.|||+|+.+++       ++. .+.   ..+.+++++                      
T Consensus       127 G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~~  206 (423)
T PLN02356        127 GCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEE  206 (423)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccccccccccc
Confidence            99999999999999999999999999998853       221 111   223444433                      


Q ss_pred             -----------hCCeeecCCCCCCccccCCCCcch-hccchhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHh
Q psy5622         138 -----------LGLTYINGYLSSGLSVLGYDHPDI-MAGQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMA  204 (269)
Q Consensus       138 -----------~~~~~~~~~~~~~~~~~g~~n~~~-~~g~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~  204 (269)
                                 .+.+|++|          |+|+.+ ..++..+|+||++|++ .+|+||+|+||||+++|++++||++  
T Consensus       207 ~~~~~~~~~~~~~~~~~~q----------~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~--  274 (423)
T PLN02356        207 EKENSLFSSSCTGGFFADQ----------FENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEK--  274 (423)
T ss_pred             cccccccccCCCCcEecCc----------cCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHh--
Confidence                       35567777          889885 3444456999999997 8999999999999999999999999  


Q ss_pred             cCCCCCCCcEEEEEcCCCCh---------HHHHHHHcCCCCCCCCcccccccccCCCCCHHHHHHHhhhhcccC
Q psy5622         205 GQGTVGLEIVDQGVESDRCA---------SFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLIDKMF  269 (269)
Q Consensus       205 ~~g~~~~~~~vigVe~~~~~---------~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~  269 (269)
                           +|.++|++|||.++.         .++.+++.|++...+. +|+++|++++.+..   ...++++|+++
T Consensus       275 -----~P~vkVigVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~-~tia~Gig~~~~~~---~~~~~~vD~~v  339 (423)
T PLN02356        275 -----NPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPF-DTITEGIGINRLTQ---NFLMAKLDGAF  339 (423)
T ss_pred             -----CCCCEEEEEecCCCccccccccchhhhhhhhcCCccCCCC-CeecCcCcCCCCCh---hHhHHhCCcEE
Confidence                 999999999999987         4566777887654433 79999998775443   34566777753

>PRK10717 cysteine synthase A; Provisional

Probab=100.00  E-value=3.3e-47  Score=348.12  Aligned_cols=221  Identities=21%  Similarity=0.222  Sum_probs=186.5

Q ss_pred             ceeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHHHh
Q psy5622          14 GFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSR   89 (269)
Q Consensus        14 ~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a~~   89 (269)
                      .+...+++|||++++ |++.+|++||+|+|++|||||||||++.+++.++.+.+.   .++|+++|+||||+|+|++|++
T Consensus         6 ~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~   85 (330)
T PRK10717          6 DVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIGLALVAAA   85 (330)
T ss_pred             hHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence            355678999999998 998889999999999999999999999999999865543   2679999999999999999999


Q ss_pred             cCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCC-HHH---HHHH----HHHHHhh--hCCeeecCCCCCCccccCCCCc
Q psy5622          90 LNIPVTVVMPIVAPIMKIQACRRYGATVIVEGAD-MKE---AKNI----ALKKGAE--LGLTYINGYLSSGLSVLGYDHP  159 (269)
Q Consensus        90 ~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~-~~~---~~~~----a~~~~~~--~~~~~~~~~~~~~~~~~g~~n~  159 (269)
                      +|++|+||||+.+++.|+++++.|||+|+.++++ +++   ..+.    ++++.++  .+++|+++          |+||
T Consensus        86 ~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~----------~~~~  155 (330)
T PRK10717         86 RGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQ----------FDNP  155 (330)
T ss_pred             cCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCC----------CCCh
Confidence            9999999999999999999999999999999864 332   2333    3344333  36778888          8999


Q ss_pred             ch-hccchhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCC
Q psy5622         160 DI-MAGQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTP  237 (269)
Q Consensus       160 ~~-~~g~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~  237 (269)
                      .+ ..||.++++||++|++ .+|+||+|+|+||+++|++++|+++       .|+++|++|||+++ ++..+++.|+...
T Consensus       156 ~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~-------~~~~~vi~Vep~~~-~~~~~~~~g~~~~  227 (330)
T PRK10717        156 ANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKET-------NPKVKIVLADPTGS-ALYSYYKTGELKA  227 (330)
T ss_pred             hhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHh-------CCCCEEEEEcCCCC-ccccccccCCcCC
Confidence            85 5789999999999997 7999999999999999999999999       89999999999999 4666776666442


Q ss_pred             CCCcccccccccCCCCC
Q psy5622         238 VSVQPTLADGLAVPLVG  254 (269)
Q Consensus       238 ~~~~~t~a~gl~~~~~~  254 (269)
                        ..+++++|++++.+.
T Consensus       228 --~~~~~~~gl~~~~~~  242 (330)
T PRK10717        228 --EGSSITEGIGQGRIT  242 (330)
T ss_pred             --CCCcccCcCCCCcCC
Confidence              345778888766543

>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase

Probab=100.00  E-value=2.3e-46  Score=336.92  Aligned_cols=190  Identities=27%  Similarity=0.290  Sum_probs=177.7

Q ss_pred             cCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622          20 QWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSRLNIPVT   95 (269)
Q Consensus        20 ~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a~~~G~~~~   95 (269)
                      |+|||++++ |++..|.+||+|+|++|||||||+|++.+++.++.+++.   .++|+++|+||||+|+|++|+++|++|+
T Consensus         1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~   80 (291)
T cd01561           1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAKGYRFI   80 (291)
T ss_pred             CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCeEE
Confidence            689999998 888889999999999999999999999999999865543   2679999999999999999999999999


Q ss_pred             EEEcCCCcHHHHHHHHHcCCEEEEeCCCH----HHHHHHHHHHHhhh-CCeeecCCCCCCccccCCCCcchhccch-hHH
Q psy5622          96 VVMPIVAPIMKIQACRRYGATVIVEGADM----KEAKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHPDIMAGQG-TVG  169 (269)
Q Consensus        96 ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~----~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~~~~~g~~-t~~  169 (269)
                      ||||+++++.|+++++.+||+|+.+++++    +++.+.+++++++. +++|+++          |+||.+++|+. +++
T Consensus        81 i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~p~~~~g~~~t~~  150 (291)
T cd01561          81 IVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQ----------FENPANPEAHYETTA  150 (291)
T ss_pred             EEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecC----------CCCchHHHHHHHHHH
Confidence            99999999999999999999999998766    88889999998887 7899998          89999989887 999


Q ss_pred             HHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622         170 LEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF  226 (269)
Q Consensus       170 ~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~  226 (269)
                      +||++|++ .||+||+|+|+||+++|++.+|+++       .|.+++|+|||++++++
T Consensus       151 ~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~-------~~~~~vi~Ve~~~~~~~  201 (291)
T cd01561         151 PEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEK-------NPNVRIVGVDPVGSVLF  201 (291)
T ss_pred             HHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHh-------CCCCEEEEEecCCCccc
Confidence            99999998 7999999999999999999999999       89999999999999887

CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=8.9e-47  Score=334.92  Aligned_cols=234  Identities=26%  Similarity=0.263  Sum_probs=197.1

Q ss_pred             eeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhc---CCccEEEeCCChHHHHHHHHHHhc
Q psy5622          15 FVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQ---KKKGVISASLGNHAQAMCYHGSRL   90 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~---~~~~vv~~SsGN~g~alA~~a~~~   90 (269)
                      +....|+|||++++ +....+++||+|+|++||+||.|||.|.+++.++.+++   ...+||++||||+|++||++|+.+
T Consensus         5 ~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~   84 (300)
T COG0031           5 ILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAAAK   84 (300)
T ss_pred             hHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHHHHHc
Confidence            34566999999998 88877899999999999999999999999999987655   267899999999999999999999


Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC--C-HHHHHHHHHHHHhhhCC-ee-ecCCCCCCccccCCCCcch-hcc
Q psy5622          91 NIPVTVVMPIVAPIMKIQACRRYGATVIVEGA--D-MKEAKNIALKKGAELGL-TY-INGYLSSGLSVLGYDHPDI-MAG  164 (269)
Q Consensus        91 G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~-~~~~~~~a~~~~~~~~~-~~-~~~~~~~~~~~~g~~n~~~-~~g  164 (269)
                      |+++++|||+.++.+|+++|+.|||+|+.++.  . +..+.+++++++++.+. ++ .+|          |+||.+ .+|
T Consensus        85 Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Q----------f~NpaN~~aH  154 (300)
T COG0031          85 GYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQ----------FENPANPEAH  154 (300)
T ss_pred             CCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhh----------cCCCccHHHH
Confidence            99999999999999999999999999999974  4 77888999999888843 43 456          899986 477


Q ss_pred             chhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHH----HHcC--C-CC
Q psy5622         165 QGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTA----IKHG--K-PT  236 (269)
Q Consensus       165 ~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~----~~~g--~-~~  236 (269)
                      +.+++.||++|++ .+|++|+++|||||++|++++||+.       .|.+++++|||++|+.+...    .-+|  . .+
T Consensus       155 ~~tT~~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~-------~p~i~iv~vdP~~S~~~~~G~g~~~i~GIG~~~i  227 (300)
T COG0031         155 YETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKER-------NPNVRIVAVDPEGSVLLSGGEGPHKIEGIGAGFV  227 (300)
T ss_pred             HhhhHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhh-------CCCcEEEEECCCCCcccCCCCCCcccCCCCCCcC
Confidence            7899999999998 6999999999999999999999999       99999999999999877420    0011  0 11


Q ss_pred             CCCCcccccccccCCCCCHHHHHHHhhhhc
Q psy5622         237 PVSVQPTLADGLAVPLVGWNAFETAAPLID  266 (269)
Q Consensus       237 ~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~  266 (269)
                      |......+.|.+ +..++..+|+.+|++++
T Consensus       228 p~~~~~~~iD~v-~~V~d~~A~~~~r~La~  256 (300)
T COG0031         228 PENLDLDLIDEV-IRVSDEEAIATARRLAR  256 (300)
T ss_pred             CcccccccCceE-EEECHHHHHHHHHHHHH
Confidence            222244556665 45667888999998874

>TIGR00260 thrC threonine synthase

Probab=100.00  E-value=3e-46  Score=341.45  Aligned_cols=240  Identities=20%  Similarity=0.249  Sum_probs=205.6

Q ss_pred             eeccccCCcccccc-ccccCCC-eEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCC
Q psy5622          15 FVIRDQWFNSKKSH-LSELTKM-EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNI   92 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~~~~g~-~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~   92 (269)
                      +.+++++|||++++ |.+.+|. +||+|+|++|||||||||++.+++.++. +.+..+|+++|+||||+|+|++|+.+|+
T Consensus        17 ~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~-~~g~~~vv~aSsGN~g~a~A~~a~~~g~   95 (328)
T TIGR00260        17 VDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKAL-ELGNDTVLCASTGNTGAAAAAYAGKAGV   95 (328)
T ss_pred             hhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHH-HcCCCEEEEeCCcHHHHHHHHHhccCCC
Confidence            67788999999998 8888887 9999999999999999999999999885 4556799999999999999999999999


Q ss_pred             CeEEEEcCC-CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCC--cchhccchhHH
Q psy5622          93 PVTVVMPIV-APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDH--PDIMAGQGTVG  169 (269)
Q Consensus        93 ~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n--~~~~~g~~t~~  169 (269)
                      +|+|+||++ +++.|+..++.+||+|+.++++++++.+.+++++++.++++.++           .|  |.+++||.+++
T Consensus        96 ~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~n~~~~~~~g~~t~~  164 (328)
T TIGR00260        96 KVVILYPAGKISLGKLAQALGYNAEVVAIDGNFDDAQRLVKQLFGDKEALGLNS-----------VNSIPYRLEGQKTYA  164 (328)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCcEEEEecCCHHHHHHHHHHHHhhcCeeeccc-----------CCCCCeEeeeehhHH
Confidence            999999998 89999999999999999999999999999999988766555554           34  88999999999


Q ss_pred             HHHHhhcC--CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHH-cCCCCCCCCcccccc
Q psy5622         170 LEIVDQVA--NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIK-HGKPTPVSVQPTLAD  246 (269)
Q Consensus       170 ~EI~~ql~--~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~-~g~~~~~~~~~t~a~  246 (269)
                      +||++|++  .+|+||+|+|+||+++|++.+|++. ...|+ ...+++++|||++++++..++. .|+..+....+|+++
T Consensus       165 ~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~-~~~g~-~~~p~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~  242 (328)
T TIGR00260       165 FEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEK-KEGGL-DSLPVKRGIQAEGAADIVRAFLESGQWEPIEDPATLST  242 (328)
T ss_pred             HHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHH-HhcCC-ccCCceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCc
Confidence            99999997  7999999999999999999999986 22333 2245999999999988877774 455554444579999


Q ss_pred             cccCCCCC--HHHHHHHhhhhccc
Q psy5622         247 GLAVPLVG--WNAFETAAPLIDKM  268 (269)
Q Consensus       247 gl~~~~~~--~~~~~~~~~~~~~~  268 (269)
                      +++++.|.  ...++.+++++|++
T Consensus       243 ~l~~~~p~~~~~~~~~~~~~~~~~  266 (328)
T TIGR00260       243 AIDIGNPANWERALELFRRSNGNA  266 (328)
T ss_pred             ceecCCCCCHHHHHHHHHhcCCcE
Confidence            98777653  35677777777765

Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.

>PRK11761 cysM cysteine synthase B; Provisional

Probab=100.00  E-value=2.8e-46  Score=337.11  Aligned_cols=230  Identities=22%  Similarity=0.230  Sum_probs=192.4

Q ss_pred             ccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHHHhcCC
Q psy5622          17 IRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSRLNI   92 (269)
Q Consensus        17 ~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a~~~G~   92 (269)
                      ...++|||++++ |.+..|.+||+|+|++|||||||||++.+++.++.+++.   .++|+++|+||||+|+|++|+.+|+
T Consensus         8 ~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~   87 (296)
T PRK11761          8 DTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDTLIEATSGNTGIALAMIAAIKGY   87 (296)
T ss_pred             HhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCC
Confidence            346899999998 888888999999999999999999999999999865543   2679999999999999999999999


Q ss_pred             CeEEEEcCCCcHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcch-hccchhHH
Q psy5622          93 PVTVVMPIVAPIMKIQACRRYGATVIVEGA--DMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDI-MAGQGTVG  169 (269)
Q Consensus        93 ~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~-~~g~~t~~  169 (269)
                      +|+||||+.+++.|+++|+.|||+|+.++.  +++++.+.+++++++.+++|++|          |+|+.+ ..||++++
T Consensus        88 ~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~----------~~n~~~~~~~~~t~~  157 (296)
T PRK11761         88 RMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEGEGKVLDQ----------FANPDNPLAHYETTG  157 (296)
T ss_pred             CEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhccCCEecCC----------CCChhhHHHHhhchH
Confidence            999999999999999999999999999985  78899899999999989999998          888875 45789999


Q ss_pred             HHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCC-C-CC-ccccc
Q psy5622         170 LEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTP-V-SV-QPTLA  245 (269)
Q Consensus       170 ~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~-~-~~-~~t~a  245 (269)
                      +||++|++ .+|+||+|+|+||+++|++++||++       .|.+|+++|||++++++.. +. +.+.. . +. .....
T Consensus       158 ~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~-------~~~~kvigVep~~~~~i~g-~~-~~~~~~~~~~~~~~~v  228 (296)
T PRK11761        158 PEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQ-------NPAVQIVGLQPEEGSSIPG-IR-RWPEEYLPKIFDASRV  228 (296)
T ss_pred             HHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHh-------CCCCEEEEEecCCCCcCcC-CC-CCCCCcCCcccChhhC
Confidence            99999997 7999999999999999999999999       8999999999999877631 11 11010 0 00 11222


Q ss_pred             ccccCCCCCHHHHHHHhhhhc
Q psy5622         246 DGLAVPLVGWNAFETAAPLID  266 (269)
Q Consensus       246 ~gl~~~~~~~~~~~~~~~~~~  266 (269)
                      |.+ +..++.++++.++++.+
T Consensus       229 d~~-v~V~d~e~~~a~~~l~~  248 (296)
T PRK11761        229 DRV-LDVSQQEAENTMRRLAR  248 (296)
T ss_pred             CEE-EEECHHHHHHHHHHHHH
Confidence            333 34456777777777664

>TIGR01136 cysKM cysteine synthases

Probab=100.00  E-value=4.6e-46  Score=336.26  Aligned_cols=194  Identities=24%  Similarity=0.238  Sum_probs=178.4

Q ss_pred             ccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHHHhcCCCe
Q psy5622          19 DQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSRLNIPV   94 (269)
Q Consensus        19 ~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a~~~G~~~   94 (269)
                      .++|||++++ |++..|.+||+|+|++|||||||+|++.+++..+.+.+.   .++|+++|+||||+|+|++|+++|++|
T Consensus         5 vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~   84 (299)
T TIGR01136         5 IGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAMVAAAKGYKL   84 (299)
T ss_pred             cCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCcE
Confidence            5799999998 998888999999999999999999999999999865543   256999999999999999999999999


Q ss_pred             EEEEcCCCcHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHhhh-CCeeecCCCCCCccccCCCCcch-hccchhHHH
Q psy5622          95 TVVMPIVAPIMKIQACRRYGATVIVEGAD--MKEAKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHPDI-MAGQGTVGL  170 (269)
Q Consensus        95 ~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~~~-~~g~~t~~~  170 (269)
                      +||||+++++.|+++|+.+||+|+.++++  ++++.+.+++++++. +++++++          |+|+.+ +.||+++++
T Consensus        85 ~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~~~g~~t~~~  154 (299)
T TIGR01136        85 ILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQ----------FENPANPEAHYKTTGP  154 (299)
T ss_pred             EEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCC----------CCCchhHHHHHHHHHH
Confidence            99999999999999999999999999865  688999999999886 5677888          888875 789999999


Q ss_pred             HHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHH
Q psy5622         171 EIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTA  229 (269)
Q Consensus       171 EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~  229 (269)
                      ||++|++ .||+||+|+|+||+++|++.+|+++       +|.+|+++|||++++++..+
T Consensus       155 Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~-------~~~~~vi~Ve~~~~~~~~~~  207 (299)
T TIGR01136       155 EIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQ-------NPNIKIVAVEPAESPVLSGG  207 (299)
T ss_pred             HHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHh-------CCCCEEEEEecCCCccccCC
Confidence            9999997 7999999999999999999999999       89999999999999988643

This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.

>TIGR03844 cysteate_syn cysteate synthase

Probab=100.00  E-value=9.6e-46  Score=344.98  Aligned_cols=242  Identities=18%  Similarity=0.143  Sum_probs=205.7

Q ss_pred             eccccCCcccccc-ccccCCC-eEEEEe-------CCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHH
Q psy5622          16 VIRDQWFNSKKSH-LSELTKM-EIFLKK-------DFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYH   86 (269)
Q Consensus        16 ~~~~~~TPl~~~~-l~~~~g~-~i~~K~-------E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~   86 (269)
                      ++.+|.|||++++ |++.+|+ +||+|+       |++|||||||||++.+++.++.+. +.+.|+++|+||||+|+|++
T Consensus        57 ~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~-g~~~Vv~aSsGN~g~alA~~  135 (398)
T TIGR03844        57 LRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKER-GGKTLVVASAGNTGRAFAEV  135 (398)
T ss_pred             CCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH
Confidence            5678889999998 9999999 999955       558999999999999999998644 47889999999999999999


Q ss_pred             HHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccch
Q psy5622          87 GSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQG  166 (269)
Q Consensus        87 a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~  166 (269)
                      |+++|++|+||||++++..+...++.+||+|+.++++++++.+.+++++++.+++..++          ++||+.++|++
T Consensus       136 aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g~~d~a~~~a~~~a~~~g~~~~~~----------~~~p~~ieG~~  205 (398)
T TIGR03844       136 SAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDGDYTDAIALADRIATLPGFVPEGG----------ARNVARRDGMG  205 (398)
T ss_pred             HHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCCCHHHHHHHHHHHHHhCCccccCC----------CCCHHHHhhHH
Confidence            99999999999999865444444578999999999999999999999998877644455          67999999999


Q ss_pred             hHHHHHHhhcCC-CCEEEEecCcchHHHHHHhHHHHHHhcCCCCC-CCcEEEEEcCCCChHHHHHHHcCCCCCCCC---c
Q psy5622         167 TVGLEIVDQVAN-IDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVG-LEIVDQGVESDRCASFSTAIKHGKPTPVSV---Q  241 (269)
Q Consensus       167 t~~~EI~~ql~~-~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~-~~~~vigVe~~~~~~~~~~~~~g~~~~~~~---~  241 (269)
                      |+++||++|+++ ||+||+|+|+|.++.|++++++++ ...|.+. ..+++++|||++|++++++|+.|.....+.   .
T Consensus       206 Ti~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l-~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~  284 (398)
T TIGR03844       206 TVMLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRL-IEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMP  284 (398)
T ss_pred             HHHHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHH-HHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCc
Confidence            999999999984 999999999999999999999998 5566663 567899999999999999999997653221   1


Q ss_pred             -------ccccccccCCCCCH----HHHHHHhhhhcccC
Q psy5622         242 -------PTLADGLAVPLVGW----NAFETAAPLIDKMF  269 (269)
Q Consensus       242 -------~t~a~gl~~~~~~~----~~~~~~~~~~~~~~  269 (269)
                             +|++++|.+++|..    .+++.+++..++++
T Consensus       285 ~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v  323 (398)
T TIGR03844       285 DAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMY  323 (398)
T ss_pred             cccccccceecceeeeCCCCcchHHHHHHHHHHhCCEEE
Confidence                   58999998777632    45888888877653

Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.

>TIGR01138 cysM cysteine synthase B

Probab=100.00  E-value=2.2e-45  Score=330.38  Aligned_cols=192  Identities=21%  Similarity=0.234  Sum_probs=176.5

Q ss_pred             cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHHHhcCCC
Q psy5622          18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSRLNIP   93 (269)
Q Consensus        18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a~~~G~~   93 (269)
                      ..++|||++++ |++..|.+||+|+|++|||||||||++.+++.++.+++.   .++|+++|+||||+|+|++|+++|++
T Consensus         5 ~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~   84 (290)
T TIGR01138         5 TVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYR   84 (290)
T ss_pred             hCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHcCCe
Confidence            46899999998 888888999999999999999999999999999875544   26799999999999999999999999


Q ss_pred             eEEEEcCCCcHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhc-cchhHHH
Q psy5622          94 VTVVMPIVAPIMKIQACRRYGATVIVEGA--DMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMA-GQGTVGL  170 (269)
Q Consensus        94 ~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~-g~~t~~~  170 (269)
                      |+||||+++++.|+++|+.|||+|+.+++  +++++.+.+++++++.+.+|++|          |+|+.++. ||+++++
T Consensus        85 ~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~~~~~~~~----------~~~~~~~~~~~~t~~~  154 (290)
T TIGR01138        85 MKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRGEGKLLDQ----------FNNPDNPYAHYTSTGP  154 (290)
T ss_pred             EEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCCCCCc----------cCCcccHHHHhHhHHH
Confidence            99999999999999999999999999985  47888899999999988788888          88887654 5799999


Q ss_pred             HHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622         171 EIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF  226 (269)
Q Consensus       171 EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~  226 (269)
                      ||++|++ .+|+||+|+|+||+++|++.+||++       .|.+|+|+|||.+++++
T Consensus       155 Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~-------~~~~kvi~Vep~~~~~~  204 (290)
T TIGR01138       155 EIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQ-------NPPVQIVGLQPEEGSSI  204 (290)
T ss_pred             HHHHHcCCCCCEEEECCCchHHHHHHHHHHHHh-------CCCCEEEEEeCCCCCCc
Confidence            9999997 7999999999999999999999999       89999999999998775

Alternate name: O-acetylserine (thiol)-lyase

>PLN02556 cysteine synthase/L-3-cyanoalanine synthase

Probab=100.00  E-value=1e-45  Score=341.81  Aligned_cols=196  Identities=18%  Similarity=0.210  Sum_probs=176.8

Q ss_pred             ceeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhc----CCccEEEeCCChHHHHHHHHHH
Q psy5622          14 GFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQ----KKKGVISASLGNHAQAMCYHGS   88 (269)
Q Consensus        14 ~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~----~~~~vv~~SsGN~g~alA~~a~   88 (269)
                      .+.+.+|+|||++++ +....|++||+|+|++|||||||||++.++|.++.+.+    +.++||++|+||||+|+|++|+
T Consensus        52 ~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~~a~  131 (368)
T PLN02556         52 DASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAA  131 (368)
T ss_pred             hHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHHHHH
Confidence            356688999999998 88778899999999999999999999999999986554    2468999999999999999999


Q ss_pred             hcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHhhh-CCeeecCCCCCCccccCCCCcchh-cc
Q psy5622          89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA--DMKEAKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHPDIM-AG  164 (269)
Q Consensus        89 ~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~~~~-~g  164 (269)
                      .+|++|+||||+.++..|+.+|+.|||+|+.++.  +....++.+++++++. +++|++|          |+||.++ .|
T Consensus       132 ~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q----------~~np~~~~~g  201 (368)
T PLN02556        132 MKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQ----------FSNPANTQVH  201 (368)
T ss_pred             HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCC----------CCCHHHHHHH
Confidence            9999999999999999999999999999999974  3346677788888776 5777888          8999987 59


Q ss_pred             chhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622         165 QGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF  226 (269)
Q Consensus       165 ~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~  226 (269)
                      |.++++||++|+. .+|+||+|+||||+++|+++++|++       +|.+||++|||++++++
T Consensus       202 ~~ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~-------~p~~kVigVep~~~~~~  257 (368)
T PLN02556        202 FETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSK-------NPNVKIYGVEPAESNVL  257 (368)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHh-------CCCCEEEEEeeCCCccc
Confidence            9999999999985 7999999999999999999999999       89999999999999765

>PLN00011 cysteine synthase

Probab=100.00  E-value=1.9e-45  Score=335.49  Aligned_cols=196  Identities=21%  Similarity=0.166  Sum_probs=174.3

Q ss_pred             eeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC----CccEEEeCCChHHHHHHHHHHh
Q psy5622          15 FVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK----KKGVISASLGNHAQAMCYHGSR   89 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~----~~~vv~~SsGN~g~alA~~a~~   89 (269)
                      +...+++|||++++ +....|.+||+|+|++|||||||||++.+++.++.+++.    .++||++|+||||+|+|++|+.
T Consensus        11 ~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~   90 (323)
T PLN00011         11 VTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAA   90 (323)
T ss_pred             HHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHH
Confidence            34457999999998 776667899999999999999999999999999876553    5789999999999999999999


Q ss_pred             cCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCH--HHHHHHHHHHHhhh-CCeeecCCCCCCccccCCCCcch-hccc
Q psy5622          90 LNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADM--KEAKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHPDI-MAGQ  165 (269)
Q Consensus        90 ~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~--~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~~~-~~g~  165 (269)
                      +|++|+||||+++++.|+++++.|||+|+.++.++  ++..+.+++++++. +++|+++          |+|+.+ ..||
T Consensus        91 ~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~----------~~n~~n~~~~~  160 (323)
T PLN00011         91 RGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQ----------FENPANPEIHY  160 (323)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEecc----------ccCCccHHHHH
Confidence            99999999999999999999999999999998643  45567788888875 4777888          887764 3589


Q ss_pred             hhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH
Q psy5622         166 GTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS  227 (269)
Q Consensus       166 ~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~  227 (269)
                      .++++||++|+. .||+||+|+|+||+++|+++++|++       .|.+++|+|||++++++.
T Consensus       161 ~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~-------~~~~kvigVe~~~~~~~~  216 (323)
T PLN00011        161 RTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEK-------NKDIKVCVVEPVESAVLS  216 (323)
T ss_pred             HHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhh-------CCCCEEEEEecCCCcccC
Confidence            999999999986 8999999999999999999999999       899999999999998873

>TIGR01139 cysK cysteine synthase A

Probab=100.00  E-value=1.2e-45  Score=333.27  Aligned_cols=193  Identities=21%  Similarity=0.208  Sum_probs=173.7

Q ss_pred             cccCCccccccccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHHHhcCCCe
Q psy5622          18 RDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSRLNIPV   94 (269)
Q Consensus        18 ~~~~TPl~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a~~~G~~~   94 (269)
                      .+++|||++++-....|.+||+|+|++|||||||||++.+++.++.+++.   ..+|+++|+||||+|+|++|+++|++|
T Consensus         4 ~~g~TPl~~~~~~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~   83 (298)
T TIGR01139         4 LIGNTPLVRLNRIEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAMVAAARGYKL   83 (298)
T ss_pred             ccCCCceEEccccCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHHHHHHHHHcCCeE
Confidence            46899999987333567899999999999999999999999998865543   266999999999999999999999999


Q ss_pred             EEEEcCCCcHHHHHHHHHcCCEEEEeCCCH--HHHHHHHHHHHhhhC--CeeecCCCCCCccccCCCCcc-hhccchhHH
Q psy5622          95 TVVMPIVAPIMKIQACRRYGATVIVEGADM--KEAKNIALKKGAELG--LTYINGYLSSGLSVLGYDHPD-IMAGQGTVG  169 (269)
Q Consensus        95 ~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~--~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~g~~n~~-~~~g~~t~~  169 (269)
                      +||||+++++.|+++|+.+||+|+.+++++  +++.+.+++++++.+  ++++++          |+||. .+.||++++
T Consensus        84 ~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~n~~~~~~g~~t~~  153 (298)
T TIGR01139        84 ILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQ----------FENPANPEIHRKTTG  153 (298)
T ss_pred             EEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccc----------cCCcccHHHHHHHHH
Confidence            999999999999999999999999999764  578888999998876  456777          88988 478999999


Q ss_pred             HHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH
Q psy5622         170 LEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS  227 (269)
Q Consensus       170 ~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~  227 (269)
                      +||++|++ .||+||+|+|+||+++|++.+|+++       .+.+|+|+|||.++++++
T Consensus       154 ~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~-------~~~~~vi~Ve~~~~~~~~  205 (298)
T TIGR01139       154 PEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQ-------KPNIKIVAVEPAESPVLS  205 (298)
T ss_pred             HHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhc-------CCCCEEEEEecCCCcccC
Confidence            99999997 7999999999999999999999999       889999999999998775

This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=100.00  E-value=4.7e-43  Score=333.16  Aligned_cols=190  Identities=20%  Similarity=0.266  Sum_probs=169.5

Q ss_pred             cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHHHhcCCC
Q psy5622          18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSRLNIP   93 (269)
Q Consensus        18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a~~~G~~   93 (269)
                      ..++|||++++ |++.+|.+||+|+|++|||||||+|+|.+++.++.+++.   .++|+++|+||||+|+|++|+++|++
T Consensus         8 ~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~ssGN~g~alA~~a~~~G~~   87 (454)
T TIGR01137         8 LIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDTIIEPTSGNTGIGLALVAAIKGYK   87 (454)
T ss_pred             hcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCe
Confidence            35799999998 888888899999999999999999999999999875543   26799999999999999999999999


Q ss_pred             eEEEEcCCCcHHHHHHHHHcCCEEEEeCCC--HHH---HHHHHHHHHhhh-CCeeecCCCCCCccccCCCCcch-hccch
Q psy5622          94 VTVVMPIVAPIMKIQACRRYGATVIVEGAD--MKE---AKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHPDI-MAGQG  166 (269)
Q Consensus        94 ~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~--~~~---~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~~~-~~g~~  166 (269)
                      |++|||+++++.|+++++.|||+|+.++++  +++   ..+.+.+++++. +.+|+++          |+|+.+ ..||.
T Consensus        88 ~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~----------~~~~~~~~~~~~  157 (454)
T TIGR01137        88 CIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQ----------YNNPSNPLAHYD  157 (454)
T ss_pred             EEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEeccc----------CCChhhHHHHHH
Confidence            999999999999999999999999999853  332   355677777763 5667788          888885 47999


Q ss_pred             hHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCCh
Q psy5622         167 TVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCA  224 (269)
Q Consensus       167 t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~  224 (269)
                      ++++||++|++ .||+||+|+|+||+++|++.++|+.       .|.++|++|||.+++
T Consensus       158 t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~-------~~~~~vi~ve~~~~~  209 (454)
T TIGR01137       158 GTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKES-------NPKCRIVGADPEGSI  209 (454)
T ss_pred             hhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhh-------CCCCEEEEEecCCCc
Confidence            99999999997 7999999999999999999999998       899999999999986

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=100.00  E-value=2.4e-43  Score=318.12  Aligned_cols=235  Identities=33%  Similarity=0.486  Sum_probs=197.5

Q ss_pred             eeccccCCccccc--c-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcC
Q psy5622          15 FVIRDQWFNSKKS--H-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLN   91 (269)
Q Consensus        15 ~~~~~~~TPl~~~--~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G   91 (269)
                      ++.++++|||+++  + +.+..+.+||+|+|++|||||||||++.+++.++. +.+.++|+++|+||||.|+|++|+.+|
T Consensus         1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~-~~~~~~vv~assGN~g~a~A~~a~~~g   79 (306)
T PF00291_consen    1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAK-EKGGRTVVGASSGNHGRALAYAAARLG   79 (306)
T ss_dssp             GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHH-HTTTSEEEEESSSHHHHHHHHHHHHHT
T ss_pred             CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcc-ccccceeeeeccCCceehhhhhhhhcc
Confidence            3567899999995  3 55666789999999999999999999999999975 456788999999999999999999999


Q ss_pred             CCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCee-------ecCCCCCCccccCCCCcchhcc
Q psy5622          92 IPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTY-------INGYLSSGLSVLGYDHPDIMAG  164 (269)
Q Consensus        92 ~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~g~~n~~~~~g  164 (269)
                      ++|++|+|+++++.|+++++.+||+|+.++.+++++.+.+.+++++. ..+       +++          ++|+..+.|
T Consensus        80 ~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------~~~~~~~~g  148 (306)
T PF00291_consen   80 LKCTIVVPEDVSPEKLKQMRALGAEVILVPGDVEGAFDDAQELAKER-AELLSPFNGELNQ----------YNNPNVIAG  148 (306)
T ss_dssp             CEEEEEEETTSHHHHHHHHHHTTCEEEEESSTHHHHHHHHHHHHHHH-HHHHHHSTTEEST----------TTSHHHHHH
T ss_pred             ccceeeeccccccccccceeeecceEEEccccccccccccccccccc-cccccccccccCc----------ccchhhhhh
Confidence            99999999999999999999999999999987776666666665543 111       444          677889999


Q ss_pred             chhHHHHHHhhcCCCC--EEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcc
Q psy5622         165 QGTVGLEIVDQVANID--AIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQP  242 (269)
Q Consensus       165 ~~t~~~EI~~ql~~~d--~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~  242 (269)
                      +.++++||++|++.||  +||+|+|+||+++|++.+++.+     . .|.+++++|||.++++++++++.|.+...+...
T Consensus       149 ~~~~~~Ei~~q~~~~d~d~vvv~~GtGg~~~Gi~~~~~~~-----~-~~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~  222 (306)
T PF00291_consen  149 YATIGLEIYEQLGKPDPDYVVVPVGTGGTAAGIAAGLKEL-----I-LPPVRVIGVEPEGSDPLYRSFKAGKPIRLPGES  222 (306)
T ss_dssp             HHHHHHHHHHHHTTESESEEEEEESSSHHHHHHHHHHHHH-----C-HTTSEEEEEEETTGHHHHHHHHHTSCEHSSCHH
T ss_pred             hhhcchhcccccccccceEEEecCCchhHHHHHHhhhhhh-----h-cccccceeeeccCCcccccccccccccccccee
Confidence            9999999999997555  4999999999999999999984     1 178999999999999999999999876543334


Q ss_pred             cccccccCCC--CCHHHHHHHhhhhccc
Q psy5622         243 TLADGLAVPL--VGWNAFETAAPLIDKM  268 (269)
Q Consensus       243 t~a~gl~~~~--~~~~~~~~~~~~~~~~  268 (269)
                      +++ ||+.+.  ++...|+.++++++++
T Consensus       223 ~~~-gl~~~~~~~~~~~~~~~~~~~~~~  249 (306)
T PF00291_consen  223 TIA-GLGVPMPFPGELDLELIDEYVGDV  249 (306)
T ss_dssp             SST-GGTSSSCTTTTHHHHHHHHETEEE
T ss_pred             eee-cccCCccchhhhhhhhhhhccccc
Confidence            555 888777  7777888998887654

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....

>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions

Probab=100.00  E-value=1.4e-42  Score=304.53  Aligned_cols=182  Identities=39%  Similarity=0.583  Sum_probs=173.0

Q ss_pred             Ccccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC--CccEEEeCCChHHHHHHHHHHhcCCCeEEEE
Q psy5622          22 FNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK--KKGVISASLGNHAQAMCYHGSRLNIPVTVVM   98 (269)
Q Consensus        22 TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~--~~~vv~~SsGN~g~alA~~a~~~G~~~~ivv   98 (269)
                      |||++++ |++..+.+||+|+|++|||||||||++.+++..+.+.++  ..+|+++|+||+|.|+|++|+.+|++|++|+
T Consensus         1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~   80 (244)
T cd00640           1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTGGNTGIALAAAAARLGLKCTIVM   80 (244)
T ss_pred             CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEE
Confidence            8999998 888778899999999999999999999999999865553  6889999999999999999999999999999


Q ss_pred             cCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhh-hCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcC
Q psy5622          99 PIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAE-LGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA  177 (269)
Q Consensus        99 p~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~  177 (269)
                      |++.++.|+++|+.+||+|+.++++++++.+.+++++++ .+++|+++          |+|+.+++|+.++++||.+|++
T Consensus        81 p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~n~~~~~g~~~~~~Ei~~q~~  150 (244)
T cd00640          81 PEGASPEKVAQMRALGAEVVLVPGDFDDAIALAKELAEEDPGAYYVNQ----------FDNPANIAGQGTIGLEILEQLG  150 (244)
T ss_pred             CCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhCCCCEecCC----------CCCHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999998 78899998          8999999999999999999998


Q ss_pred             C--CCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcC
Q psy5622         178 N--IDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVES  220 (269)
Q Consensus       178 ~--~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~  220 (269)
                      .  ||+||+|+|+||+++|++.+|++.       .|.++|++|||
T Consensus       151 ~~~~d~ivvp~GtGg~~~G~~~~~~~~-------~~~~~ii~v~~  188 (244)
T cd00640         151 GQKPDAVVVPVGGGGNIAGIARALKEL-------LPNVKVIGVEP  188 (244)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHh-------CCCCEEEEEee
Confidence            5  999999999999999999999999       89999999999

This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy

>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme

Probab=100.00  E-value=3.6e-41  Score=315.75  Aligned_cols=232  Identities=22%  Similarity=0.224  Sum_probs=178.7

Q ss_pred             eeccccCCcccccc-ccccCC--CeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEE-EeCCChHHHHHHHHHHhc
Q psy5622          15 FVIRDQWFNSKKSH-LSELTK--MEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVI-SASLGNHAQAMCYHGSRL   90 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~~~~g--~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv-~~SsGN~g~alA~~a~~~   90 (269)
                      +.+..++|||++++ |++.+|  .+||+|+|++|||||||+|+|..++.++.+++ ..+++ ++|+||||.|+|++|+.+
T Consensus        62 ~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G-~~~~vtetssGN~G~alA~aaa~~  140 (419)
T TIGR01415        62 YAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEG-AKRLVTETGAGQWGSALSLAGALF  140 (419)
T ss_pred             HHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcC-CCeEEEecCchHHHHHHHHHHHHc
Confidence            33444689999998 998887  58999999999999999999999999886555 44555 478999999999999999


Q ss_pred             CCCeEEEEcCCC---cHHHHHHHHHcCCEEEEeCCCHHHH------------------HHHHHHHHhhhC-CeeecCCCC
Q psy5622          91 NIPVTVVMPIVA---PIMKIQACRRYGATVIVEGADMKEA------------------KNIALKKGAELG-LTYINGYLS  148 (269)
Q Consensus        91 G~~~~ivvp~~~---~~~~~~~l~~~Ga~v~~~~~~~~~~------------------~~~a~~~~~~~~-~~~~~~~~~  148 (269)
                      |++|+||||...   ++.|+.+|+.|||+|+.++++++++                  +..+.+++++.+ ..|+.++  
T Consensus       141 Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~~--  218 (419)
T TIGR01415       141 GLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLGS--  218 (419)
T ss_pred             CCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCchhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeCC--
Confidence            999999999853   5688999999999999999876654                  345556665543 5455441  


Q ss_pred             CCccccCCCCcchhccchhHHHHHHhhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCCh
Q psy5622         149 SGLSVLGYDHPDIMAGQGTVGLEIVDQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCA  224 (269)
Q Consensus       149 ~~~~~~g~~n~~~~~g~~t~~~EI~~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~  224 (269)
                             +.| ....|+.++++||++|++    .||+||+|+|+||+++|++.+|++. ...|  .+.+++|+|||++|+
T Consensus       219 -------~~n-~~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~-~l~g--~~~~rviaVep~~~~  287 (419)
T TIGR01415       219 -------VLN-HVLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVAD-KLSG--KIDRRFIAAEPKACP  287 (419)
T ss_pred             -------CCc-HHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHH-HhcC--CCCCEEEEEeeCCCh
Confidence                   344 356799999999999997    4999999999999999999999554 2233  247999999999999


Q ss_pred             HHHHHHH------cCCCCCCC----------CcccccccccCCCCCHHHHHH
Q psy5622         225 SFSTAIK------HGKPTPVS----------VQPTLADGLAVPLVGWNAFET  260 (269)
Q Consensus       225 ~~~~~~~------~g~~~~~~----------~~~t~a~gl~~~~~~~~~~~~  260 (269)
                      ++.+++.      .+...+..          ...++++||.+..+++.....
T Consensus       288 ~l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l  339 (419)
T TIGR01415       288 TLTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLL  339 (419)
T ss_pred             hhhcCcccccccccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHH
Confidence            9976541      12212211          235678888777666543333

This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.

>KOG1252|consensus

Probab=100.00  E-value=5.5e-42  Score=303.68  Aligned_cols=196  Identities=22%  Similarity=0.202  Sum_probs=174.1

Q ss_pred             eeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhc----CCccEEEeCCChHHHHHHHHHHh
Q psy5622          15 FVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQ----KKKGVISASLGNHAQAMCYHGSR   89 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~----~~~~vv~~SsGN~g~alA~~a~~   89 (269)
                      .....|+|||++++ +.....++||+|+|++||+||.|||.++.|+.++.+++    +..+++++||||+|.+||++|+.
T Consensus        46 ~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a~  125 (362)
T KOG1252|consen   46 VRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAAL  125 (362)
T ss_pred             HHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHHHHHH
Confidence            44577999999998 87767779999999999999999999999999997665    35789999999999999999999


Q ss_pred             cCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC--CH---HHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcc-hhc
Q psy5622          90 LNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA--DM---KEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPD-IMA  163 (269)
Q Consensus        90 ~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~-~~~  163 (269)
                      .|++|+++||+..+.+|+..|+.+||+|+.++.  .+   ..+...+.++..+.+..|+.+|         |+||. ...
T Consensus       126 ~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Q---------f~np~Np~~  196 (362)
T KOG1252|consen  126 RGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQ---------FHNPGNPLA  196 (362)
T ss_pred             cCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHH---------hcCCCCccc
Confidence            999999999999999999999999999999872  22   3478888888888776665443         67765 359


Q ss_pred             cchhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622         164 GQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF  226 (269)
Q Consensus       164 g~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~  226 (269)
                      ||.+++.|||+|+. .+|.+|.++|||||++|+.+++|+.       +|+++|++|||.+|..+
T Consensus       197 hy~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~-------~~~~kVv~vdp~~S~~~  253 (362)
T KOG1252|consen  197 HYETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQ-------NPNIKVVGVDPQESIVL  253 (362)
T ss_pred             ccccccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHh-------CCCCEEEEeCCCcceec
Confidence            99999999999997 8999999999999999999999999       99999999999999655

>TIGR00263 trpB tryptophan synthase, beta subunit

Probab=100.00  E-value=9.8e-41  Score=310.82  Aligned_cols=233  Identities=21%  Similarity=0.210  Sum_probs=183.8

Q ss_pred             ccCCcccccc-ccccCC-CeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622          19 DQWFNSKKSH-LSELTK-MEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV   96 (269)
Q Consensus        19 ~~~TPl~~~~-l~~~~g-~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i   96 (269)
                      ..+|||++++ |++.+| .+||+|+|++|||||||||.+..++..+.+.+....|+++|+||||+|+|++|+++|++|+|
T Consensus        48 ~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~vi~e~ssGN~G~alA~~a~~~Gl~~~I  127 (385)
T TIGR00263        48 GRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRIIAETGAGQHGVATATAAALLGLDCEV  127 (385)
T ss_pred             CCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCEEE
Confidence            3599999998 998888 69999999999999999999999998875444444455799999999999999999999999


Q ss_pred             EEcCC-CcH--HHHHHHHHcCCEEEEeCC---CHHHHH-HHHHHHHhh-hCCeeecCCCCCCccccCCC--Cc--c-hhc
Q psy5622          97 VMPIV-API--MKIQACRRYGATVIVEGA---DMKEAK-NIALKKGAE-LGLTYINGYLSSGLSVLGYD--HP--D-IMA  163 (269)
Q Consensus        97 vvp~~-~~~--~~~~~l~~~Ga~v~~~~~---~~~~~~-~~a~~~~~~-~~~~~~~~~~~~~~~~~g~~--n~--~-~~~  163 (269)
                      |||+. .+.  .|+.+|+.|||+|+.++.   .++++. +.+++++++ .+.+|+.++         +.  +|  . ..+
T Consensus       128 v~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~---------~~~~~p~~~~~~~  198 (385)
T TIGR00263       128 YMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGS---------AVGPHPFPTMVRD  198 (385)
T ss_pred             EecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCC---------cCCCCCchHHHHH
Confidence            99985 443  567899999999999973   366764 444555655 345676542         22  22  2 258


Q ss_pred             cchhHHHHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCC----hHHHHHHHcCC
Q psy5622         164 GQGTVGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRC----ASFSTAIKHGK  234 (269)
Q Consensus       164 g~~t~~~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~----~~~~~~~~~g~  234 (269)
                      |++|+++||++|+.     .||+||+|+|+||+++|++.++. .       .|.++||+|||+++    ..+..++..|.
T Consensus       199 ~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~-~-------~~~~~iigVe~~gs~~~~~~~~~~~~~g~  270 (385)
T TIGR00263       199 FQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFI-D-------DPSVQLIGVEAGGLGIDTDKHAATLAKGS  270 (385)
T ss_pred             HhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHh-h-------CCCCeEEEEEeCCCcccchhhhhhhhcCC
Confidence            99999999999972     58999999999999999999884 3       68899999999996    34456676775


Q ss_pred             CC----------C-----CCCcccccccccCCCCCHHHHHHHhhhhccc
Q psy5622         235 PT----------P-----VSVQPTLADGLAVPLVGWNAFETAAPLIDKM  268 (269)
Q Consensus       235 ~~----------~-----~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~  268 (269)
                      +.          .     .+...|+++|++++.+++..++..+...|++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~  319 (385)
T TIGR00263       271 PGVLHGMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATY  319 (385)
T ss_pred             eeEecCcccccccCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEE
Confidence            42          0     2234689999998888888888777666544

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.

>PRK04346 tryptophan synthase subunit beta; Validated

Probab=100.00  E-value=1.7e-40  Score=308.58  Aligned_cols=231  Identities=23%  Similarity=0.248  Sum_probs=181.6

Q ss_pred             cCCcccccc-ccccC-CCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEE
Q psy5622          20 QWFNSKKSH-LSELT-KMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVV   97 (269)
Q Consensus        20 ~~TPl~~~~-l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~iv   97 (269)
                      .+|||++++ |++.+ |.+||+|+|++|||||||+|++...+..+.+.++...|+++|+||||+|+|++|+++|++|+||
T Consensus        57 rpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk~~vIaetgaGnhG~A~A~~aa~~Gl~c~I~  136 (397)
T PRK04346         57 RPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGKKRIIAETGAGQHGVATATAAALLGLECVIY  136 (397)
T ss_pred             CCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHHHHHHcCCcEEEE
Confidence            479999998 99988 5799999999999999999999999988765555555666999999999999999999999999


Q ss_pred             EcCC-Cc--HHHHHHHHHcCCEEEEeCC---CHHHHHHHHHH-HHhh-hCCeeecCCCCCCccccCCCCcc---hhccch
Q psy5622          98 MPIV-AP--IMKIQACRRYGATVIVEGA---DMKEAKNIALK-KGAE-LGLTYINGYLSSGLSVLGYDHPD---IMAGQG  166 (269)
Q Consensus        98 vp~~-~~--~~~~~~l~~~Ga~v~~~~~---~~~~~~~~a~~-~~~~-~~~~~~~~~~~~~~~~~g~~n~~---~~~g~~  166 (269)
                      ||+. .+  ..|+..|+.+||+|+.++.   +++++.+.+.+ +.++ .+.+|+.++      +.| .+|+   ..+||+
T Consensus       137 mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs------~~g-php~p~~v~~~q~  209 (397)
T PRK04346        137 MGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGS------VAG-PHPYPTMVRDFQS  209 (397)
T ss_pred             ecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCC------cCC-CCCchHHHHHhcc
Confidence            9985 33  3467789999999999984   67777665555 4554 355676541      122 2343   357999


Q ss_pred             hHHHHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCC----hHHHHHHHcCCCC-
Q psy5622         167 TVGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRC----ASFSTAIKHGKPT-  236 (269)
Q Consensus       167 t~~~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~----~~~~~~~~~g~~~-  236 (269)
                      +++.||.+|+.     .||+||+|+|+||+++|++.+|++        ++.+++|||||.++    ..+..++..|.+. 
T Consensus       210 tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~--------~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~  281 (397)
T PRK04346        210 VIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID--------DESVRLIGVEAAGKGLETGKHAATLTKGRPGV  281 (397)
T ss_pred             hHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh--------CCCCeEEEEecCCCccccccccchhhcCCeee
Confidence            99999999983     599999999999999999999953        68899999999986    3345566666542 


Q ss_pred             --------------CCCCcccccccccCCCCCHHHHHHHhhhh
Q psy5622         237 --------------PVSVQPTLADGLAVPLVGWNAFETAAPLI  265 (269)
Q Consensus       237 --------------~~~~~~t~a~gl~~~~~~~~~~~~~~~~~  265 (269)
                                    ......|+++||+.+.+++..+.......
T Consensus       282 ~~g~~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~  324 (397)
T PRK04346        282 LHGAKTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGR  324 (397)
T ss_pred             eccccceecccCCCccCCCceeeccccCCCCCHHHHHHHhcCC
Confidence                          11224789999999988877665444433

>PRK03910 D-cysteine desulfhydrase; Validated

Probab=100.00  E-value=2e-41  Score=310.05  Aligned_cols=199  Identities=24%  Similarity=0.249  Sum_probs=168.1

Q ss_pred             ceeccccCCcccccc-ccccCCCeEEEEeCCCCCC--CchhhHHHHHHHHhchHhcCCccEEEeC--CChHHHHHHHHHH
Q psy5622          14 GFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVT--GSFKERGACYALLMLSEDQKKKGVISAS--LGNHAQAMCYHGS   88 (269)
Q Consensus        14 ~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~npt--GS~K~R~a~~~l~~~~~~~~~~~vv~~S--sGN~g~alA~~a~   88 (269)
                      .+.+.+++|||++++ |++.+|.+||+|+|++||+  ||||||++.+++.++. +.+.++||+++  +||||+|+|++|+
T Consensus         8 ~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~-~~g~~~vvt~g~s~gN~g~alA~~a~   86 (331)
T PRK03910          8 RLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADAL-AQGADTLITAGAIQSNHARQTAAAAA   86 (331)
T ss_pred             CccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHH-HcCCCEEEEcCcchhHHHHHHHHHHH
Confidence            366788999999998 8888899999999999997  6999999999999875 44567888864  5999999999999


Q ss_pred             hcCCCeEEEEcCCCcH--------HHHHHHHHcCCEEEEeCCC---HHHHHHHHHHHHhhhCCeeecCCCCCCccccCCC
Q psy5622          89 RLNIPVTVVMPIVAPI--------MKIQACRRYGATVIVEGAD---MKEAKNIALKKGAELGLTYINGYLSSGLSVLGYD  157 (269)
Q Consensus        89 ~~G~~~~ivvp~~~~~--------~~~~~l~~~Ga~v~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~  157 (269)
                      .+|++|+||||+..++        .|+..++.|||+|+.++.+   .+.+...++++.++.+..|+.+        .++.
T Consensus        87 ~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~--------~~~~  158 (331)
T PRK03910         87 KLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIP--------VGGS  158 (331)
T ss_pred             HhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEEC--------CCCC
Confidence            9999999999998775        4558999999999999864   2233445666666554444433        1278


Q ss_pred             CcchhccchhHHHHHHhhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHH
Q psy5622         158 HPDIMAGQGTVGLEIVDQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFST  228 (269)
Q Consensus       158 n~~~~~g~~t~~~EI~~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~  228 (269)
                      |+....|+.+++.||++|++    .||+||+|+||||+++|++++|+++       ++++++|+|||++++.+..
T Consensus       159 ~~~~~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~-------~~~~~vigVe~~~~~~~~~  226 (331)
T PRK03910        159 NALGALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAAL-------GPDIPVIGVTVSRSAAEQE  226 (331)
T ss_pred             CchhHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHh-------CCCCeEEEEEecCCHHHHH
Confidence            99999999999999999997    6999999999999999999999999       8999999999999877653

>PLN02618 tryptophan synthase, beta chain

Probab=100.00  E-value=1.3e-40  Score=309.98  Aligned_cols=227  Identities=23%  Similarity=0.236  Sum_probs=179.0

Q ss_pred             CCcccccc-ccccC------CCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCC
Q psy5622          21 WFNSKKSH-LSELT------KMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIP   93 (269)
Q Consensus        21 ~TPl~~~~-l~~~~------g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~   93 (269)
                      +|||++++ |++.+      |.+||+|+|++|||||||+|++...+..+.+.++...|+++|+||||+|+|++|+++|++
T Consensus        66 ~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~~~vIaesgaGNhG~AlA~aaa~~Gl~  145 (410)
T PLN02618         66 ETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLE  145 (410)
T ss_pred             CCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCc
Confidence            89999998 99877      479999999999999999999999888765444333444667999999999999999999


Q ss_pred             eEEEEcCCC---cHHHHHHHHHcCCEEEEe---CCCHHHHHH-HHHHHHhh-hCCeeecCCCCCCccccCCCCc---chh
Q psy5622          94 VTVVMPIVA---PIMKIQACRRYGATVIVE---GADMKEAKN-IALKKGAE-LGLTYINGYLSSGLSVLGYDHP---DIM  162 (269)
Q Consensus        94 ~~ivvp~~~---~~~~~~~l~~~Ga~v~~~---~~~~~~~~~-~a~~~~~~-~~~~~~~~~~~~~~~~~g~~n~---~~~  162 (269)
                      |+||||+..   +..|+.+|+.|||+|+.+   +++++++.. .+++++++ .+.+|+..+      +.| .+|   ...
T Consensus       146 ~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs------~~g-p~P~~~~v~  218 (410)
T PLN02618        146 CIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGS------VAG-PHPYPMMVR  218 (410)
T ss_pred             EEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecC------cCC-CCCCHHHHH
Confidence            999999853   345677999999999999   568888874 44557765 445666431      111 133   246


Q ss_pred             ccchhHHHHHHhhc-----CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCC----hHHHHHHHcC
Q psy5622         163 AGQGTVGLEIVDQV-----ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRC----ASFSTAIKHG  233 (269)
Q Consensus       163 ~g~~t~~~EI~~ql-----~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~----~~~~~~~~~g  233 (269)
                      +++++++.||.+|+     ..||+||+|+|+||+++|++.+|+ .       ++.+++|+|||.++    ..+..++..|
T Consensus       219 ~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~-~-------~~~v~ligVEa~G~~~~~~~~~a~l~~g  290 (410)
T PLN02618        219 DFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFI-D-------DEDVRLIGVEAAGFGLDSGKHAATLTKG  290 (410)
T ss_pred             HhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHH-h-------CCCceEEEEEeCCCcccccccccchhcC
Confidence            99999999998887     369999999999999999999995 3       68999999999997    4445566666


Q ss_pred             CCCC---------------CCCcccccccccCCCCCHHHHHHHhh
Q psy5622         234 KPTP---------------VSVQPTLADGLAVPLVGWNAFETAAP  263 (269)
Q Consensus       234 ~~~~---------------~~~~~t~a~gl~~~~~~~~~~~~~~~  263 (269)
                      ++..               ....+|+++||+++.+++. ++.+++
T Consensus       291 ~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~-~~~l~~  334 (410)
T PLN02618        291 EVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPE-HSFLKD  334 (410)
T ss_pred             CcceeccccccccccccCCCCCCcchhhhhcCCCCcHH-HHHHHh
Confidence            5421               1234789999999988877 677766

>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions

Probab=100.00  E-value=1.9e-40  Score=307.21  Aligned_cols=235  Identities=21%  Similarity=0.237  Sum_probs=179.7

Q ss_pred             cCCcccccc-ccccC-CCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEE-eCCChHHHHHHHHHHhcCCCeEE
Q psy5622          20 QWFNSKKSH-LSELT-KMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVIS-ASLGNHAQAMCYHGSRLNIPVTV   96 (269)
Q Consensus        20 ~~TPl~~~~-l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~-~SsGN~g~alA~~a~~~G~~~~i   96 (269)
                      .+|||++++ |++.+ +.+||+|+|++|||||||||.+..++..+.+.+ ...+++ +|+||||+|+|++|+++|++|+|
T Consensus        33 ~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g-~~~vv~~~ssGN~g~alA~~a~~~G~~~~i  111 (365)
T cd06446          33 RPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMG-KKRVIAETGAGQHGVATATACALFGLECEI  111 (365)
T ss_pred             CCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcC-CCeEEEecCchHHHHHHHHHHHHhCCCeEE
Confidence            499999998 88888 569999999999999999999999998775444 455555 79999999999999999999999


Q ss_pred             EEcCCCc---HHHHHHHHHcCCEEEEeCC---CHHHHHHHHHHH-Hhhh-CCee-ecCCCCCCccccCCCCcchhccchh
Q psy5622          97 VMPIVAP---IMKIQACRRYGATVIVEGA---DMKEAKNIALKK-GAEL-GLTY-INGYLSSGLSVLGYDHPDIMAGQGT  167 (269)
Q Consensus        97 vvp~~~~---~~~~~~l~~~Ga~v~~~~~---~~~~~~~~a~~~-~~~~-~~~~-~~~~~~~~~~~~g~~n~~~~~g~~t  167 (269)
                      |+|+..+   +.|+.+++.+||+|+.++.   +++++...+.+. +++. +.+| +++ +..   .+++ ....++|++|
T Consensus       112 vvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~-~~~---~~~~-~~~~~ag~~t  186 (365)
T cd06446         112 YMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGS-VVG---PHPY-PNMVRDFQSV  186 (365)
T ss_pred             EEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEeccc-ccC---CCCc-hHHHHHhhhH
Confidence            9998643   3577899999999999984   356665444443 4432 3344 332 000   0012 1235899999


Q ss_pred             HHHHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH----HHHHcCCCC--
Q psy5622         168 VGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS----TAIKHGKPT--  236 (269)
Q Consensus       168 ~~~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~----~~~~~g~~~--  236 (269)
                      +++||++|++     .||+||+|+|+||+++|++++++..        +.++||+|||.+++++.    .+++.|...  
T Consensus       187 ~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~~--------~~~~vigVep~gs~~~~~~~~~~~~~g~~~~~  258 (365)
T cd06446         187 IGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIND--------KDVKLIGVEAGGCGLETGGHAAYLFGGTAGVL  258 (365)
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHhC--------CCceEEEEcCCCCccccccceeeccCCCccee
Confidence            9999999985     5999999999999999999988753        48999999999998885    334444431  


Q ss_pred             -------------CCCCcccccccccCCCCCHHHHHHHhhhhccc
Q psy5622         237 -------------PVSVQPTLADGLAVPLVGWNAFETAAPLIDKM  268 (269)
Q Consensus       237 -------------~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~  268 (269)
                                   ......|+++||.++.+.+..+...++.+|++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~  303 (365)
T cd06446         259 HGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEY  303 (365)
T ss_pred             cchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceE
Confidence                         11234689999987777777777777777654

In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.

>PRK13028 tryptophan synthase subunit beta; Provisional

Probab=100.00  E-value=5.6e-40  Score=305.58  Aligned_cols=232  Identities=24%  Similarity=0.220  Sum_probs=181.3

Q ss_pred             cCCcccccc-ccccC-CCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEE
Q psy5622          20 QWFNSKKSH-LSELT-KMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVV   97 (269)
Q Consensus        20 ~~TPl~~~~-l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~iv   97 (269)
                      .+|||++++ |++.+ |.+||+|+|++|||||||+|.+...+..+.+.++...|+++|+||||+|+|++|+++|++|+||
T Consensus        61 ~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~~~vI~etgsGnhG~A~A~aaa~~Gl~~~I~  140 (402)
T PRK13028         61 RPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGKKRLIAETGAGQHGVATATAAALFGLECEIY  140 (402)
T ss_pred             CCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHHHHHHcCCCEEEE
Confidence            589999998 99888 5699999999999999999999999988765554445667999999999999999999999999


Q ss_pred             EcCCCcH---HHHHHHHHcCCEEEEeCC---CHHHHHHHHHH-HHhh-hCCeeecCCCCCCccccCCCCcc---hhccch
Q psy5622          98 MPIVAPI---MKIQACRRYGATVIVEGA---DMKEAKNIALK-KGAE-LGLTYINGYLSSGLSVLGYDHPD---IMAGQG  166 (269)
Q Consensus        98 vp~~~~~---~~~~~l~~~Ga~v~~~~~---~~~~~~~~a~~-~~~~-~~~~~~~~~~~~~~~~~g~~n~~---~~~g~~  166 (269)
                      ||+..++   .|+..|+.+||+|+.++.   +++++.+.+.+ ++++ .+.+|+.++      +.| .+|+   ...|++
T Consensus       141 m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s------~~g-p~p~p~~v~~~q~  213 (402)
T PRK13028        141 MGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGS------VVG-PHPFPMMVRDFQS  213 (402)
T ss_pred             ECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecC------cCC-CCCcHHHHHHHhH
Confidence            9986433   467799999999999973   78888888755 4555 356777651      112 1333   346999


Q ss_pred             hHHHHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCC----ChHHHHHHHcCCCCC
Q psy5622         167 TVGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDR----CASFSTAIKHGKPTP  237 (269)
Q Consensus       167 t~~~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~----~~~~~~~~~~g~~~~  237 (269)
                      +++.||.+|+.     .||+||+|+|+||+++|++.+|++        .+.+++|||||.+    ++.+..++..|++..
T Consensus       214 tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~--------~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~  285 (402)
T PRK13028        214 VIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD--------DESVRLVGVEPAGRGLDLGEHAATLTLGKPGV  285 (402)
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh--------CCCceEEEEecCCCCcccccccccccCCCcce
Confidence            99999999972     599999999999999999999974        5789999999999    333333444555421


Q ss_pred             ---------------CCCcccccccccCCCCCHHHHHHHhhhhc
Q psy5622         238 ---------------VSVQPTLADGLAVPLVGWNAFETAAPLID  266 (269)
Q Consensus       238 ---------------~~~~~t~a~gl~~~~~~~~~~~~~~~~~~  266 (269)
                                     ....+|+++||+++.+++..+.......+
T Consensus       286 ~~g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~  329 (402)
T PRK13028        286 IHGFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRV  329 (402)
T ss_pred             ecccceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcCc
Confidence                           11246899999988888876655444433

>KOG1481|consensus

Probab=100.00  E-value=6e-41  Score=289.80  Aligned_cols=243  Identities=23%  Similarity=0.222  Sum_probs=198.7

Q ss_pred             cccCCCcceeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHH
Q psy5622           7 VHCGQDLGFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQA   82 (269)
Q Consensus         7 ~~~~~~~~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~a   82 (269)
                      -+.+-..|+.-.+|+|||++++ |++.+|++||.|+|++||.||.|||.|.++++.+.+.++   ...|++.|+||+|++
T Consensus        35 ke~~~~~Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~v~EGtaGsTgIs  114 (391)
T KOG1481|consen   35 KEPGIVSGVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGTVVEGTAGSTGIS  114 (391)
T ss_pred             cCCCccchhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCceEEecCCCccchh
Confidence            3344444677788999999999 999999999999999999999999999999999876553   567999999999999


Q ss_pred             HHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC----CHHHHHHHHHHHHhhhC-------CeeecCCCCCCc
Q psy5622          83 MCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA----DMKEAKNIALKKGAELG-------LTYINGYLSSGL  151 (269)
Q Consensus        83 lA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~----~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~  151 (269)
                      +|..|..+|++|+|+||++.+.+|.+.++.+||+|..++.    +.+.-++.|++.+++..       .+|.+|      
T Consensus       115 lA~v~~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQ------  188 (391)
T KOG1481|consen  115 LAHVARALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQ------  188 (391)
T ss_pred             HHHhhhhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhh------
Confidence            9999999999999999999999999999999999998862    44444555555444431       366788      


Q ss_pred             cccCCCCcch-hccchhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCC-cEEEEEcCCCCh----
Q psy5622         152 SVLGYDHPDI-MAGQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLE-IVDQGVESDRCA----  224 (269)
Q Consensus       152 ~~~g~~n~~~-~~g~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~-~~vigVe~~~~~----  224 (269)
                          |+|+.+ .+||.++|+|||.|.+ ++|++++.+||||+++|+.+++|+.       .+. ++++..+|-+|-    
T Consensus       189 ----FeN~AN~~aHyetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek-------~~~~v~~~laDPpGSGlYnk  257 (391)
T KOG1481|consen  189 ----FENVANWLAHYETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEK-------SDGRVAVFLADPPGSGLYNK  257 (391)
T ss_pred             ----hcCHHHHHHHhcCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhc-------CCCceEEEEeCCCCCchhhh
Confidence                899986 5899999999999997 8999999999999999999999998       664 899999999983    


Q ss_pred             ----HHHHHHH-cCCCCCCCCcccccccccCCCCCHHHHHHHhhhhccc
Q psy5622         225 ----SFSTAIK-HGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLIDKM  268 (269)
Q Consensus       225 ----~~~~~~~-~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~  268 (269)
                          .|+...+ +|..-. ...+||.+||.+...+.+ |.+..+++|+-
T Consensus       258 V~~GVmy~~~e~eG~r~r-~q~dti~EGIGinRiT~N-f~m~~~liD~a  304 (391)
T KOG1481|consen  258 VNYGVMYDHIETEGTRRR-NQVDTITEGIGINRITGN-FQMAEDLIDDA  304 (391)
T ss_pred             hhhhhhhhhhhhcCcccC-CCcchhhhcccccccccc-cccchhhhhhh
Confidence                2333222 333222 235789999888777665 77777777753

>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family

Probab=100.00  E-value=2.7e-40  Score=300.07  Aligned_cols=188  Identities=24%  Similarity=0.210  Sum_probs=161.1

Q ss_pred             cccCCcccccc-ccccCCCeEEEEeCCCCCC--CchhhHHHHHHHHhchHhcCCccEEEe--CCChHHHHHHHHHHhcCC
Q psy5622          18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVT--GSFKERGACYALLMLSEDQKKKGVISA--SLGNHAQAMCYHGSRLNI   92 (269)
Q Consensus        18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~npt--GS~K~R~a~~~l~~~~~~~~~~~vv~~--SsGN~g~alA~~a~~~G~   92 (269)
                      ...+|||++++ |++..|.+||+|+|++|||  ||||||++.+++.++. +.+.++||++  |+||||+|+|++|+++|+
T Consensus         4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~-~~g~~~vv~~g~ssGN~g~alA~~a~~~G~   82 (311)
T TIGR01275         4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADAL-SKGADTVITVGAIQSNHARATALAAKKLGL   82 (311)
T ss_pred             CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHH-HcCCCEEEEcCCchhHHHHHHHHHHHHhCC
Confidence            34699999998 9888889999999999998  9999999999998874 5556789997  669999999999999999


Q ss_pred             CeEEEEcCCC-cHHHHHHHHHcCCEEEEeCC-CHHHHHHHHHHHHhh----hCCeee--cCCCCCCccccCCCCcchhcc
Q psy5622          93 PVTVVMPIVA-PIMKIQACRRYGATVIVEGA-DMKEAKNIALKKGAE----LGLTYI--NGYLSSGLSVLGYDHPDIMAG  164 (269)
Q Consensus        93 ~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~~-~~~~~~~~a~~~~~~----~~~~~~--~~~~~~~~~~~g~~n~~~~~g  164 (269)
                      +|++|||+.. +..+..+++.|||+|+.++. ++++..+.+++++++    .+..|+  ++          +.||....|
T Consensus        83 ~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~----------~~~~~~~~g  152 (311)
T TIGR01275        83 DAVLVLREKEELNGNLLLDKLMGAETRVYSAEEYFEIMKYAEELAEELEKEGRKPYVIPVG----------GSNSLGTLG  152 (311)
T ss_pred             ceEEEecCCccCCCCHHHHHHcCCEEEEECchhhhhhHHHHHHHHHHHHhcCCCeEEECCC----------CCcHHHHHH
Confidence            9999999975 45567778999999999984 666666666665543    222333  44          789999999


Q ss_pred             chhHHHHHHhhcC---CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCC
Q psy5622         165 QGTVGLEIVDQVA---NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRC  223 (269)
Q Consensus       165 ~~t~~~EI~~ql~---~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~  223 (269)
                      +.++++||++|++   .||+||+|+||||+++|++.+||++       +|+++||+|||+.+
T Consensus       153 ~~~~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~-------~~~~~vigV~~~~~  207 (311)
T TIGR01275       153 YVEAVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSIL-------NEDIRPVGVAVGRF  207 (311)
T ss_pred             HHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHh-------CCCCcEEEEEeccc
Confidence            9999999999996   7999999999999999999999999       99999999998776

This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).

>PRK12391 tryptophan synthase subunit beta; Reviewed

Probab=100.00  E-value=2e-39  Score=304.47  Aligned_cols=198  Identities=22%  Similarity=0.246  Sum_probs=162.8

Q ss_pred             ccCCcccccc-ccccCC--CeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEE-eCCChHHHHHHHHHHhcCCCe
Q psy5622          19 DQWFNSKKSH-LSELTK--MEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVIS-ASLGNHAQAMCYHGSRLNIPV   94 (269)
Q Consensus        19 ~~~TPl~~~~-l~~~~g--~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~-~SsGN~g~alA~~a~~~G~~~   94 (269)
                      .++|||++++ |++.+|  .+||+|+|++|||||||+|+|..++.++.+.+ ...+++ +|+||+|+|+|++|+.+|++|
T Consensus        75 ~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G-~~~~vtetgsGN~G~alA~aaa~~Gl~~  153 (427)
T PRK12391         75 WRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEG-IKRLTTETGAGQWGSALALACALFGLEC  153 (427)
T ss_pred             cCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCC-CCEEEEccCchHHHHHHHHHHHHcCCcE
Confidence            3699999998 998887  58999999999999999999999998876444 445665 679999999999999999999


Q ss_pred             EEEEcCC---CcHHHHHHHHHcCCEEEEeCCCHHH------------------HHHHHHHHHhhh-CCeeecCCCCCCcc
Q psy5622          95 TVVMPIV---APIMKIQACRRYGATVIVEGADMKE------------------AKNIALKKGAEL-GLTYINGYLSSGLS  152 (269)
Q Consensus        95 ~ivvp~~---~~~~~~~~l~~~Ga~v~~~~~~~~~------------------~~~~a~~~~~~~-~~~~~~~~~~~~~~  152 (269)
                      +||||+.   .++.|+.+|+.|||+|+.+++++++                  ++..+.+++++. +.+|+.+       
T Consensus       154 ~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~-------  226 (427)
T PRK12391        154 TVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALG-------  226 (427)
T ss_pred             EEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcC-------
Confidence            9999974   4668899999999999999876544                  455566666554 4466655       


Q ss_pred             ccCCCCcchhccchhHHHHHHhhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHH
Q psy5622         153 VLGYDHPDIMAGQGTVGLEIVDQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFST  228 (269)
Q Consensus       153 ~~g~~n~~~~~g~~t~~~EI~~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~  228 (269)
                         ..+...+.||.++++||++|++    .||+||+|+|+||+++|++.+|.+. +..|  .+.+|+|+|||++|+++++
T Consensus       227 ---s~~~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~-~~~g--~~~~riiaVEp~~~~~l~~  300 (427)
T PRK12391        227 ---SVLNHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGD-KLEG--KKDTRFIAVEPAACPTLTK  300 (427)
T ss_pred             ---CCCcHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHH-HhcC--CCCceEEEEeeccchhhcc
Confidence               3334567899999999999996    6999999999999999999977544 1122  1789999999999999986


Q ss_pred             HH
Q psy5622         229 AI  230 (269)
Q Consensus       229 ~~  230 (269)
                      ++
T Consensus       301 g~  302 (427)
T PRK12391        301 GE  302 (427)
T ss_pred             cc
Confidence            53

>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=7.3e-40  Score=303.60  Aligned_cols=235  Identities=23%  Similarity=0.265  Sum_probs=211.9

Q ss_pred             ceeccccCCcccccc-ccccCCC---eEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHh
Q psy5622          14 GFVIRDQWFNSKKSH-LSELTKM---EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSR   89 (269)
Q Consensus        14 ~~~~~~~~TPl~~~~-l~~~~g~---~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~   89 (269)
                      ...++++.||+++.+ +...++.   ++|+|.|++|||||||||++..++..+.+.++ .+|+++||||+|.|+|+++.+
T Consensus        69 ~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-~~I~~ASSGnTgAs~aaya~r  147 (411)
T COG0498          69 AVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-KTILCASSGNTGASAAAYAAR  147 (411)
T ss_pred             hhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-CEEEEeCCchHHHHHHHHhcc
Confidence            457899999999987 8877775   59999999999999999999999999865554 899999999999999999999


Q ss_pred             cCCCeEEEEcCC-CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhH
Q psy5622          90 LNIPVTVVMPIV-APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTV  168 (269)
Q Consensus        90 ~G~~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~  168 (269)
                      .|++|+|++|.+ ++..|+.+|..+|++++.+++++|||++.+++++++.++++...          .-||.+++|++|+
T Consensus       148 ag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G~fDda~~~vk~~~~~~~~~~~~n----------siNp~rlegq~t~  217 (411)
T COG0498         148 AGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDGNFDDAQELVKEAANREGLLSAVN----------SINPYRLEGQKTY  217 (411)
T ss_pred             CCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcCcHHHHHHHHHHHHhhCCceeecc----------ccCHHHhhhhhhh
Confidence            999999999998 99999999999999999999999999999999999888777665          5899999999999


Q ss_pred             HHHHHhhcC--CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccc
Q psy5622         169 GLEIVDQVA--NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLAD  246 (269)
Q Consensus       169 ~~EI~~ql~--~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~  246 (269)
                      ++||++|+.  .||+|++|+|+||++.|+++++++. ...|.+...++..+||++++.++...++.+.    ....|+++
T Consensus       218 ~fe~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~-~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~----~~~~T~a~  292 (411)
T COG0498         218 AFEIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEG-LPIGKIDKAPNMNGVQAEGFSPGVYAWKEGR----ETPETIAP  292 (411)
T ss_pred             HhHHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhc-ccccchhcCchhhhhhHhhccchhhhccccc----cccccccc
Confidence            999999998  6999999999999999999999998 6777777888999999999999998887765    34579999


Q ss_pred             cccCCCCCHHHHHHHhhhhc
Q psy5622         247 GLAVPLVGWNAFETAAPLID  266 (269)
Q Consensus       247 gl~~~~~~~~~~~~~~~~~~  266 (269)
                      +|++++|.+  |+++...+.
T Consensus       293 am~I~~p~n--~~r~l~a~~  310 (411)
T COG0498         293 AMDIGNPSN--WERALFALR  310 (411)
T ss_pred             ccccCCCCC--HHHHHHHHH
Confidence            999999887  666655443

>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional

Probab=100.00  E-value=9.7e-40  Score=299.60  Aligned_cols=203  Identities=19%  Similarity=0.105  Sum_probs=168.2

Q ss_pred             CCcceeccccCCcccccc-ccccCC--CeEEEEeCCCCCC---CchhhHHHHHHHHhchHhcCCccEEEe--CCChHHHH
Q psy5622          11 QDLGFVIRDQWFNSKKSH-LSELTK--MEIFLKKDFFQVT---GSFKERGACYALLMLSEDQKKKGVISA--SLGNHAQA   82 (269)
Q Consensus        11 ~~~~~~~~~~~TPl~~~~-l~~~~g--~~i~~K~E~~npt---GS~K~R~a~~~l~~~~~~~~~~~vv~~--SsGN~g~a   82 (269)
                      ..+.+.+.+++|||++++ +++.+|  .+||+|+|++||+   ||+|||.+.+++.++. +.+..+|+++  |+||||+|
T Consensus         5 ~~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~-~~G~~~vvs~G~s~GN~g~a   83 (337)
T PRK12390          5 KFPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDAL-AQGADTLVSIGGVQSNHTRQ   83 (337)
T ss_pred             CCCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHH-HcCCCEEEEeCCCccHHHHH
Confidence            335677899999999998 888888  6999999999998   7889999999999875 5667888887  88999999


Q ss_pred             HHHHHHhcCCCeEEEEcCCCc--------HHHHHHHHHcCCEEEEeCCCHH----HHHHHHHHHHhh-hCCeeecCCCCC
Q psy5622          83 MCYHGSRLNIPVTVVMPIVAP--------IMKIQACRRYGATVIVEGADMK----EAKNIALKKGAE-LGLTYINGYLSS  149 (269)
Q Consensus        83 lA~~a~~~G~~~~ivvp~~~~--------~~~~~~l~~~Ga~v~~~~~~~~----~~~~~a~~~~~~-~~~~~~~~~~~~  149 (269)
                      +|++|+++|++|++|++..++        ..|+.+++.|||+|+.++.+++    ++.+.+.+..++ .+..|.++.   
T Consensus        84 lA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  160 (337)
T PRK12390         84 VAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPA---  160 (337)
T ss_pred             HHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCC---
Confidence            999999999999999876544        2367789999999999987653    666666666665 344554430   


Q ss_pred             CccccCCCCcchhccchhHHHHHHhhc---C-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChH
Q psy5622         150 GLSVLGYDHPDIMAGQGTVGLEIVDQV---A-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCAS  225 (269)
Q Consensus       150 ~~~~~g~~n~~~~~g~~t~~~EI~~ql---~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~  225 (269)
                          ....++....|+.++++||++|+   + +||+||+|+|+||+++|++.+||+.       +|.+|||+|||+++.+
T Consensus       161 ----~~~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~-------~~~~rvigV~~~~~~~  229 (337)
T PRK12390        161 ----GASDHPLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAAD-------GRARRVIGIDASAKPE  229 (337)
T ss_pred             ----cCCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhc-------CCCceEEEEEecCchH
Confidence                01134667789999999999984   4 6999999999999999999999998       9999999999999988


Q ss_pred             HHH
Q psy5622         226 FST  228 (269)
Q Consensus       226 ~~~  228 (269)
                      +..
T Consensus       230 ~~~  232 (337)
T PRK12390        230 QTR  232 (337)
T ss_pred             HHH
Confidence            754

>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia

Probab=100.00  E-value=2.9e-38  Score=286.36  Aligned_cols=227  Identities=22%  Similarity=0.159  Sum_probs=175.5

Q ss_pred             Ccccccc-ccccC--CCeEEEEeCCCCCC---CchhhHHHHHHHHhchHhcCCccEEEe--CCChHHHHHHHHHHhcCCC
Q psy5622          22 FNSKKSH-LSELT--KMEIFLKKDFFQVT---GSFKERGACYALLMLSEDQKKKGVISA--SLGNHAQAMCYHGSRLNIP   93 (269)
Q Consensus        22 TPl~~~~-l~~~~--g~~i~~K~E~~npt---GS~K~R~a~~~l~~~~~~~~~~~vv~~--SsGN~g~alA~~a~~~G~~   93 (269)
                      |||++++ |++.+  +.+||+|+|++||+   ||+|||++.+++.++. +.+.++|+++  |+||||.|+|++|+.+|++
T Consensus         1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~-~~g~~~vv~~ggs~GN~g~alA~~a~~~G~~   79 (307)
T cd06449           1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDAL-AKGADTLVTVGGIQSNHTRQVAAVAAKLGLK   79 (307)
T ss_pred             CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHH-HcCCCEEEECCCchhHHHHHHHHHHHHcCCe
Confidence            8999998 88877  56999999999999   5679999999999875 4556788887  6899999999999999999


Q ss_pred             eEEEEcCCCc--------HHHHHHHHHcCCEEEEeCCCHHH----HHH-HHHHHHhhhCC-eeecCCCCCCccccCC-CC
Q psy5622          94 VTVVMPIVAP--------IMKIQACRRYGATVIVEGADMKE----AKN-IALKKGAELGL-TYINGYLSSGLSVLGY-DH  158 (269)
Q Consensus        94 ~~ivvp~~~~--------~~~~~~l~~~Ga~v~~~~~~~~~----~~~-~a~~~~~~~~~-~~~~~~~~~~~~~~g~-~n  158 (269)
                      |+||||++.+        ..|+.+++.|||+|+.++.++++    +.+ .++++.++.+. +++.++         + +|
T Consensus        80 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~  150 (307)
T cd06449          80 CVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAG---------GSEH  150 (307)
T ss_pred             EEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCC---------CCCC
Confidence            9999999876        46889999999999999865433    222 23333333332 333331         4 49


Q ss_pred             cchhccchhHHHHHHhhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHH----
Q psy5622         159 PDIMAGQGTVGLEIVDQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAI----  230 (269)
Q Consensus       159 ~~~~~g~~t~~~EI~~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~----  230 (269)
                      |..++||.++++||++|++    .||+||+|+|+||+++|++++||++       ++.++||+|||++++++..+-    
T Consensus       151 ~~~~~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~-------~~~~~ii~V~~~~~~~~~~~~~~~~  223 (307)
T cd06449         151 PLGGLGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAAL-------GRQRRVIGIDASAKPEKTKAQVLRI  223 (307)
T ss_pred             cccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhc-------CCCCeEEEEEecCchHHHHHHHHHH
Confidence            9999999999999999996    5999999999999999999999999       899999999999998875431    


Q ss_pred             -----H-cCCCCC---CCCcccccccccCCCCCHHHHHHHhhhhc
Q psy5622         231 -----K-HGKPTP---VSVQPTLADGLAVPLVGWNAFETAAPLID  266 (269)
Q Consensus       231 -----~-~g~~~~---~~~~~t~a~gl~~~~~~~~~~~~~~~~~~  266 (269)
                           . .|....   ........+.. +..++.+.++.++++..
T Consensus       224 ~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~v~d~e~~~a~~~la~  267 (307)
T cd06449         224 AQAKLAEEGLEVKEEDVVLDDDYAAPE-YGIPNDETIEAIKLCAR  267 (307)
T ss_pred             HHHHHHHcCCCCCcccEEEecCcccCC-CCCCCHHHHHHHHHHHH
Confidence                 0 221111   11112223332 45677888888887653

>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase

Probab=100.00  E-value=7.5e-38  Score=287.08  Aligned_cols=200  Identities=18%  Similarity=0.116  Sum_probs=167.8

Q ss_pred             cceeccccCCcccccc-ccccCCC--eEEEEeCCCCCC---CchhhHHHHHHHHhchHhcCCccEEEe--CCChHHHHHH
Q psy5622          13 LGFVIRDQWFNSKKSH-LSELTKM--EIFLKKDFFQVT---GSFKERGACYALLMLSEDQKKKGVISA--SLGNHAQAMC   84 (269)
Q Consensus        13 ~~~~~~~~~TPl~~~~-l~~~~g~--~i~~K~E~~npt---GS~K~R~a~~~l~~~~~~~~~~~vv~~--SsGN~g~alA   84 (269)
                      +.+.+.+|+|||++++ |++.+|.  +||+|+|++||+   ||+|||.+.+++.++. +.+..+|+++  |+||||+|+|
T Consensus         6 ~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~-~~G~~~vvs~ggs~gN~g~alA   84 (337)
T TIGR01274         6 PRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQ-AQGCTTLVSIGGIQSNQTRQVA   84 (337)
T ss_pred             CccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHH-HcCCCEEEECCCCcchHHHHHH
Confidence            5578899999999999 9988874  999999999986   7779999999999875 5667788876  7799999999


Q ss_pred             HHHHhcCCCeEEEEcCCCc--------HHHHHHHHHcCCEEEEeCCCHH----HHHHHHHHHHhhh-CC-eeecCCCCCC
Q psy5622          85 YHGSRLNIPVTVVMPIVAP--------IMKIQACRRYGATVIVEGADMK----EAKNIALKKGAEL-GL-TYINGYLSSG  150 (269)
Q Consensus        85 ~~a~~~G~~~~ivvp~~~~--------~~~~~~l~~~Ga~v~~~~~~~~----~~~~~a~~~~~~~-~~-~~~~~~~~~~  150 (269)
                      ++|+++|++|+||||+..+        +.|+.+++.|||+|+.++++++    ++...+.+..++. +. +++..     
T Consensus        85 ~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~-----  159 (337)
T TIGR01274        85 AVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPA-----  159 (337)
T ss_pred             HHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCC-----
Confidence            9999999999999998543        5799999999999999987654    4555555555554 44 44444     


Q ss_pred             ccccCCCCcchhccchhHHHHHHhhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622         151 LSVLGYDHPDIMAGQGTVGLEIVDQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF  226 (269)
Q Consensus       151 ~~~~g~~n~~~~~g~~t~~~EI~~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~  226 (269)
                         .+..|+....|+.++++||++|++    .||+||+|+|+||+++|+++++++.       ++.+|||+|||.+++++
T Consensus       160 ---~~~~~~~~~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~-------~~~~~vigV~~~~~~~~  229 (337)
T TIGR01274       160 ---GCSDHPLGGLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAAD-------GRKDRVIGIDASATPEQ  229 (337)
T ss_pred             ---CCCCCccchhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHh-------CCCCeEEEEEecCCHHH
Confidence               112357788899999999999953    6999999999999999999999998       89999999999999877


Q ss_pred             HH
Q psy5622         227 ST  228 (269)
Q Consensus       227 ~~  228 (269)
                      ..
T Consensus       230 ~~  231 (337)
T TIGR01274       230 TR  231 (337)
T ss_pred             HH
Confidence            43

This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.

>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional

Probab=100.00  E-value=4.5e-38  Score=307.40  Aligned_cols=229  Identities=23%  Similarity=0.282  Sum_probs=179.9

Q ss_pred             cCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEE
Q psy5622          20 QWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVM   98 (269)
Q Consensus        20 ~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivv   98 (269)
                      .+|||++++ |++.+|.+||+|+|++|||||||+|.+...+..+.+.++...++++|+||||+|+|++|+++|++|+|||
T Consensus       270 rpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~~~vi~e~gsGnhG~A~A~~aa~~Gl~~~I~m  349 (610)
T PRK13803        270 RPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATACALFGLKCTIFM  349 (610)
T ss_pred             CCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCCCEEEEecChHHHHHHHHHHHHHcCCcEEEEE
Confidence            589999998 9988899999999999999999999999998877544444456679999999999999999999999999


Q ss_pred             cCCC---cHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHH-H-HhhhCCeeecCCCCCCccccCCCCc--ch-hccchh
Q psy5622          99 PIVA---PIMKIQACRRYGATVIVEG---ADMKEAKNIALK-K-GAELGLTYINGYLSSGLSVLGYDHP--DI-MAGQGT  167 (269)
Q Consensus        99 p~~~---~~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~-~-~~~~~~~~~~~~~~~~~~~~g~~n~--~~-~~g~~t  167 (269)
                      |+..   +..|+.+|+.+||+|+.++   .+++++.+.+.+ + ++..+.+|+.++      +.| .+|  .. ..|+++
T Consensus       350 ~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~------~~g-~~p~p~~v~~~~~t  422 (610)
T PRK13803        350 GEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGS------AVG-PHPYPEMVAYFQSV  422 (610)
T ss_pred             eCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCC------cCC-CCCcHHHHHHHhhH
Confidence            9864   3467889999999999997   456677554444 4 333456777652      111 133  32 368999


Q ss_pred             HHHHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCC----hHHHHHHHcCCCCC-
Q psy5622         168 VGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRC----ASFSTAIKHGKPTP-  237 (269)
Q Consensus       168 ~~~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~----~~~~~~~~~g~~~~-  237 (269)
                      ++.||++|+.     .||+||+|+|+||+++|++.+|+ .       ++.+++|||||.++    ..+..++..|.+.. 
T Consensus       423 ig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~-~-------~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~  494 (610)
T PRK13803        423 IGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFL-D-------DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVL  494 (610)
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHh-h-------CCCceEEEEecCCCCcccccccchhhcCCeeee
Confidence            9999999984     59999999999999999999995 3       68899999999997    34455666665521 


Q ss_pred             --------------CCCcccccccccCCCCCHHHHHHHhh
Q psy5622         238 --------------VSVQPTLADGLAVPLVGWNAFETAAP  263 (269)
Q Consensus       238 --------------~~~~~t~a~gl~~~~~~~~~~~~~~~  263 (269)
                                    ....+|+++||+++.+++..+.....
T Consensus       495 ~g~~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~  534 (610)
T PRK13803        495 HGSMTYLMQDENGQILEPHSISAGLDYPGIGPMHANLFET  534 (610)
T ss_pred             ccceeeeecccCCcccCCceeeccCCCCCCCHHHHHHHhc
Confidence                          11346899999998888876655443

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=100.00  E-value=2.2e-37  Score=303.02  Aligned_cols=190  Identities=23%  Similarity=0.224  Sum_probs=159.1

Q ss_pred             cc-CCcccccc-cccc----CC--CeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhc
Q psy5622          19 DQ-WFNSKKSH-LSEL----TK--MEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRL   90 (269)
Q Consensus        19 ~~-~TPl~~~~-l~~~----~g--~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~   90 (269)
                      .| +|||++++ |++.    +|  .+||+|+|++|||||||||++..++..+.+.++..+|+++|+||||+|+|++|+++
T Consensus       323 iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~~~~IvetssGNhG~AlA~aaA~~  402 (695)
T PRK13802        323 VGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGKTRVIAETGAGQHGVATATVCAML  402 (695)
T ss_pred             CCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCCCCEEEEECcHHHHHHHHHHHHHc
Confidence            35 99999998 7653    45  69999999999999999999999999887666667888999999999999999999


Q ss_pred             CCCeEEEEcCC---CcHHHHHHHHHcCCEEEEeCC---CHHHHHHHH-HHHHhhh-CCee-ecCCCCCCccccCCC--Cc
Q psy5622          91 NIPVTVVMPIV---APIMKIQACRRYGATVIVEGA---DMKEAKNIA-LKKGAEL-GLTY-INGYLSSGLSVLGYD--HP  159 (269)
Q Consensus        91 G~~~~ivvp~~---~~~~~~~~l~~~Ga~v~~~~~---~~~~~~~~a-~~~~~~~-~~~~-~~~~~~~~~~~~g~~--n~  159 (269)
                      |++|+||||+.   .+..|+.+|+.|||+|+.++.   +++++.+.+ ++++++. +.+| +++          +.  ||
T Consensus       403 Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~----------~~g~~P  472 (695)
T PRK13802        403 GLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGT----------VAGPHP  472 (695)
T ss_pred             CCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecc----------cCCCCC
Confidence            99999999985   467899999999999999872   567776544 5566653 3444 555          32  33


Q ss_pred             c---hhccchhHHHHHHhhcC------CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622         160 D---IMAGQGTVGLEIVDQVA------NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF  226 (269)
Q Consensus       160 ~---~~~g~~t~~~EI~~ql~------~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~  226 (269)
                      +   ..+|++++|+||++|+.      .||+||+|+|+||+++|++.+|++        .+.+|+|||||.++.+.
T Consensus       473 ~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~--------~~~vkligVE~~g~g~~  540 (695)
T PRK13802        473 FPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD--------DERVNLYGYEAGGNGPE  540 (695)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh--------CCCceEEEEEecCCCcc
Confidence            3   56999999999999994      599999999999999999999954        67899999999997543

>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional

Probab=100.00  E-value=1e-36  Score=278.69  Aligned_cols=234  Identities=20%  Similarity=0.138  Sum_probs=180.1

Q ss_pred             cceeccccCCcccccc-ccccCCCeEEEEeCCCCCC--CchhhHHHHHHHHhchHhcCCccEE--EeCCChHHHHHHHHH
Q psy5622          13 LGFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVT--GSFKERGACYALLMLSEDQKKKGVI--SASLGNHAQAMCYHG   87 (269)
Q Consensus        13 ~~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~npt--GS~K~R~a~~~l~~~~~~~~~~~vv--~~SsGN~g~alA~~a   87 (269)
                      +.+.+.+++|||++++ |++..|++||+|+|++||+  ||||+|++.+++.++. +.+.++|+  ++|+||||+|+|++|
T Consensus        13 ~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~-~~G~~~vv~~~~ssGN~g~alA~~a   91 (329)
T PRK14045         13 PRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDAL-SRGADVVITVGAVHSNHAFVTGLAA   91 (329)
T ss_pred             CCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHH-HcCCCEEEEeCccHHHHHHHHHHHH
Confidence            4567888999999998 8888899999999999996  8999999999999875 44556777  589999999999999


Q ss_pred             HhcCCCeEEEEcCCCcHH-HHHHHHHcCCEEEEeCC--C---HHHHHHHHHHHHhhhCCee-ecCCCCCCccccCCCCcc
Q psy5622          88 SRLNIPVTVVMPIVAPIM-KIQACRRYGATVIVEGA--D---MKEAKNIALKKGAELGLTY-INGYLSSGLSVLGYDHPD  160 (269)
Q Consensus        88 ~~~G~~~~ivvp~~~~~~-~~~~l~~~Ga~v~~~~~--~---~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~g~~n~~  160 (269)
                      +++|++|++|||...+.. +...++.+||+++.++.  +   .+.+.+.+++++++.+..| ++.|         +.||.
T Consensus        92 ~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~---------~~n~~  162 (329)
T PRK14045         92 KKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPG---------GASPV  162 (329)
T ss_pred             HHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCC---------CCchh
Confidence            999999999999875443 66678999999988762  2   2345556666666554444 4332         68899


Q ss_pred             hhccchhHHHHHHhhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCCh-HHHHHHHc---
Q psy5622         161 IMAGQGTVGLEIVDQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCA-SFSTAIKH---  232 (269)
Q Consensus       161 ~~~g~~t~~~EI~~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~-~~~~~~~~---  232 (269)
                      ...|+.+...||++|++    .+|+||+|+||||+++|++.++|..       +|+++||+|+|.+.. .+...+..   
T Consensus       163 ~~~g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~-------~~~~kVigv~~~~~~~~~~~~~~~~~~  235 (329)
T PRK14045        163 GTLGYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAIL-------NAEWRVVGIAVGSFGEKMKEKVKNLVK  235 (329)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHh-------CCCCeEEEEEecCCHHHHHHHHHHHHH
Confidence            88888888889999996    6999999999999999999999999       999999999997733 33332211   


Q ss_pred             ------CCC--C--CCCCcccccccccCCCCCHHHHHHHhhhhc
Q psy5622         233 ------GKP--T--PVSVQPTLADGLAVPLVGWNAFETAAPLID  266 (269)
Q Consensus       233 ------g~~--~--~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~  266 (269)
                            |-.  .  +.-.+..+ ++  +..++..+++.++++..
T Consensus       236 ~~~~~~g~~~~~~~~~~~d~~~-~~--y~~~~~e~~~~~~~la~  276 (329)
T PRK14045        236 KTKELLGVKVKVQEPELYDYSF-GE--YGKITKEVAKLIRSVGT  276 (329)
T ss_pred             HHHHHhCCCCCccceEeccccc-CC--CCCCCHHHHHHHHHHHH
Confidence                  111  1  10112233 54  34566788999888764

>PRK09225 threonine synthase; Validated

Probab=99.97  E-value=2e-30  Score=245.30  Aligned_cols=212  Identities=15%  Similarity=0.139  Sum_probs=180.2

Q ss_pred             CCccccccccccCCCeEEEEeCCCCCCCchhhHHHHH---HHHhchHhcCCccEEEeCCChHHHHH-HHHHHhcCCCeEE
Q psy5622          21 WFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACY---ALLMLSEDQKKKGVISASLGNHAQAM-CYHGSRLNIPVTV   96 (269)
Q Consensus        21 ~TPl~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~---~l~~~~~~~~~~~vv~~SsGN~g~al-A~~a~~~G~~~~i   96 (269)
                      .+||.++      +-++|+..-+++||||||||++..   ++.++.+ ++..+|+++||||+|.|+ +.++.+.|++|+|
T Consensus        88 ~~pl~~l------~~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~~~~Il~ATSGdtG~Aa~aaf~~~~gi~~~V  160 (462)
T PRK09225         88 IAPLVQL------DDNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GEKITILGATSGDTGSAAAEAFRGKPNVRVVI  160 (462)
T ss_pred             ccceEEe------CCCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CCCcEEEEcCCCcHHHHHHHHHhCcCCCEEEE
Confidence            4777764      236899999999999999999988   7777765 557889999999999998 7889999999999


Q ss_pred             EEcCC-CcHHHHHHHHHc-CCEE--EEeCCCHHHHHHHHHHHHhh------hCCeeecCCCCCCccccCCCCcchhccch
Q psy5622          97 VMPIV-APIMKIQACRRY-GATV--IVEGADMKEAKNIALKKGAE------LGLTYINGYLSSGLSVLGYDHPDIMAGQG  166 (269)
Q Consensus        97 vvp~~-~~~~~~~~l~~~-Ga~v--~~~~~~~~~~~~~a~~~~~~------~~~~~~~~~~~~~~~~~g~~n~~~~~g~~  166 (269)
                      ++|++ +++.|+++|..+ |++|  +.+++++|++++.++++.++      .+++-.|.           .||.+++|+.
T Consensus       161 ~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~vk~~~~d~~~~~~~~l~saNS-----------iN~~Ri~gQ~  229 (462)
T PRK09225        161 LYPKGKVSPVQEKQMTTLQGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKLKLSSANS-----------INIGRLLAQI  229 (462)
T ss_pred             EEcCCCCCHHHHHHHHhhcCCCeEEEEeCCCHHHHHHHHHHHhhchhhhhcCceEEEec-----------cCHHHHHHHH
Confidence            99996 999999999999 9977  67899999999999887665      34444554           5899999999


Q ss_pred             hHHHHHHhhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcc
Q psy5622         167 TVGLEIVDQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQP  242 (269)
Q Consensus       167 t~~~EI~~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~  242 (269)
                      ++++|+++|+.    .||.|++|+|+||.+.|.+++ +++    |  -|-.|+|+++ ..++++.+.++.|...+.+...
T Consensus       230 ~yyfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~A-k~m----G--lpi~kli~A~-n~n~~l~~~~~~G~y~~~~~~~  301 (462)
T PRK09225        230 VYYFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYA-KKM----G--LPIKRLIVAT-NENDVLTRFLKTGVYDPRPTVA  301 (462)
T ss_pred             HHHHHHHHHhccccCCCCEEEEECCcHHHHHHHHHH-HHc----C--CCcceEEEEe-cCChHHHHHHHcCCCccCCCCC
Confidence            99999999996    389999999999999999988 444    3  2456899997 7788999999999866655678


Q ss_pred             cccccccCCCCCHHHHHH
Q psy5622         243 TLADGLAVPLVGWNAFET  260 (269)
Q Consensus       243 t~a~gl~~~~~~~~~~~~  260 (269)
                      |++.+|+++.|++  +++
T Consensus       302 T~s~amdI~~psn--~eR  317 (462)
T PRK09225        302 TLSPAMDISVSSN--FER  317 (462)
T ss_pred             CcCchhhcCCCCc--HHH
Confidence            9999999999888  566

>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis

Probab=99.96  E-value=4.4e-28  Score=229.42  Aligned_cols=216  Identities=16%  Similarity=0.100  Sum_probs=175.0

Q ss_pred             CCccccccccccCCCeEEEEeCCCCCCCchhhHHHHHH---HHhchHh-cCCccEEEeCCChHHHH-HHHHHHhcCCCeE
Q psy5622          21 WFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYA---LLMLSED-QKKKGVISASLGNHAQA-MCYHGSRLNIPVT   95 (269)
Q Consensus        21 ~TPl~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~---l~~~~~~-~~~~~vv~~SsGN~g~a-lA~~a~~~G~~~~   95 (269)
                      .+||.++      +-++|++..+|+||||||||++..+   +.++.+. .+..+|+++||||+|.| ++.++.+.|++|+
T Consensus        87 ~~pl~~l------~~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~~~~~Il~ATSGdTG~Aa~aaf~~~~gi~v~  160 (460)
T cd01560          87 IAPLVQL------GDNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRNERITILVATSGDTGSAAIEGFRGKPNVDVV  160 (460)
T ss_pred             ccceEEe------CCCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHhCcCCCEEE
Confidence            4677663      3368999999999999999999876   5555433 36778999999999999 5889999999999


Q ss_pred             EEEcCC-CcHHHHHHHHHcCC---EEEEeCCCHHHHHHHHHHHHhhh------CCeeecCCCCCCccccCCCCcchhccc
Q psy5622          96 VVMPIV-APIMKIQACRRYGA---TVIVEGADMKEAKNIALKKGAEL------GLTYINGYLSSGLSVLGYDHPDIMAGQ  165 (269)
Q Consensus        96 ivvp~~-~~~~~~~~l~~~Ga---~v~~~~~~~~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~g~~n~~~~~g~  165 (269)
                      |++|.+ +++.|+.+|..+|+   +++.+++++|+|++.++++.++.      +++-.|.           .|+.+++|+
T Consensus       161 Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G~fDd~q~~vk~~~~d~~~~~~~~l~saNS-----------iN~~Ri~~Q  229 (460)
T cd01560         161 VLYPKGGVSPIQELQMTTLPADNVHVVAVEGDFDDCQSLVKALFADEDFNKKLKLSSANS-----------INWARILAQ  229 (460)
T ss_pred             EEEcCCCCCHHHHHHHHhhCCCceEEEEEcCCHHHHHHHHHHHhcChhhHhcceEEEEec-----------cCHHHHHHH
Confidence            999996 99999999999997   89999999999999999877653      3333444           589999999


Q ss_pred             hhHHHHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChH-HHHHHHcCCCCCC-
Q psy5622         166 GTVGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCAS-FSTAIKHGKPTPV-  238 (269)
Q Consensus       166 ~t~~~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~-~~~~~~~g~~~~~-  238 (269)
                      .+.++|+++|+.     .++.|+||+|+||.+.|.+++.+ +    |  -|-.|+|+++  ++++ +.+.++.|...+. 
T Consensus       230 ~~yyf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~-m----G--lpi~kli~a~--n~n~il~~~~~~G~y~~~~  300 (460)
T cd01560         230 IVYYFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKK-M----G--LPIKKLIVAT--NENDVLRRFFKTGRYDRRE  300 (460)
T ss_pred             HHHHHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHH-c----C--CCCccEEEEe--CCChHHHHHHHcCCCcCCC
Confidence            999999999996     48999999999999999999843 3    3  2556788854  3444 5557788876544 


Q ss_pred             CCcccccccccCCCCCHHHHHHHhhh
Q psy5622         239 SVQPTLADGLAVPLVGWNAFETAAPL  264 (269)
Q Consensus       239 ~~~~t~a~gl~~~~~~~~~~~~~~~~  264 (269)
                      +...|++.+|+++.|++  ++++-..
T Consensus       301 ~~~~T~spamdI~~psn--~eR~L~~  324 (460)
T cd01560         301 SLKQTLSPAMDILKSSN--FERLLFL  324 (460)
T ss_pred             CCCCCcCchhhcCCCCC--HHHHHHH
Confidence            45689999999999887  5555443

The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.

>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]

Probab=99.95  E-value=9.6e-28  Score=211.34  Aligned_cols=223  Identities=24%  Similarity=0.273  Sum_probs=177.4

Q ss_pred             ccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEE
Q psy5622          19 DQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVV   97 (269)
Q Consensus        19 ~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~iv   97 (269)
                      -.+|||...+ |++.+|.+||+|+|++|.||++|...+...+.-+++-++.+.|.+...|.||.|.|.+|+++|++|+|+
T Consensus        54 GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK~riIAETGAGQHGVAtAta~A~fgl~C~iY  133 (396)
T COG0133          54 GRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATAAALFGLECVIY  133 (396)
T ss_pred             CCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCCceEEeecCCCcccHHHHHHHHHhCCceEEE
Confidence            3699999998 999999999999999999999999999998887766667777888999999999999999999999999


Q ss_pred             EcCC-Cc--HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHH-HHh-hhCCeeecCCCCCCccccCCCCcc---hhccch
Q psy5622          98 MPIV-AP--IMKIQACRRYGATVIVEG---ADMKEAKNIALK-KGA-ELGLTYINGYLSSGLSVLGYDHPD---IMAGQG  166 (269)
Q Consensus        98 vp~~-~~--~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~-~~~-~~~~~~~~~~~~~~~~~~g~~n~~---~~~g~~  166 (269)
                      |... +.  ..+.-.|+.+||+|+.+.   .+.+|+.+.|.+ +.. -...+|+.+      |+.| .+|+   ...-++
T Consensus       134 MGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iG------sa~G-PHPyP~iVRdFQ~  206 (396)
T COG0133         134 MGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIG------SAAG-PHPYPTIVRDFQS  206 (396)
T ss_pred             ecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEe------eccC-CCCchHHHHHHHH
Confidence            9763 33  345668999999999986   467888887765 333 345788766      4444 4554   457789


Q ss_pred             hHHHHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCC----hHHHHHHHcCCCCC
Q psy5622         167 TVGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRC----ASFSTAIKHGKPTP  237 (269)
Q Consensus       167 t~~~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~----~~~~~~~~~g~~~~  237 (269)
                      .|+.|.-+|+-     -||.||.|+|+|+++.|++..|.+        ++.+++||||+.+-    .-...++..|++..
T Consensus       207 vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~--------d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~Gv  278 (396)
T COG0133         207 VIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID--------DESVRLIGVEAAGKGIETGKHAATLTAGRPGV  278 (396)
T ss_pred             HHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC--------CCCceEEEeccCcCccCCCccceeecCCCcee
Confidence            99999999963     599999999999999999988853        46899999999883    22333444555432


Q ss_pred             CC---------------CcccccccccCCCCCHH
Q psy5622         238 VS---------------VQPTLADGLAVPLVGWN  256 (269)
Q Consensus       238 ~~---------------~~~t~a~gl~~~~~~~~  256 (269)
                      ..               ...||+.||+.|.++++
T Consensus       279 lhG~~tyllQd~~GQi~e~hSISAGLDYPgVGPe  312 (396)
T COG0133         279 LHGMKTYLLQDEDGQILESHSISAGLDYPGVGPE  312 (396)
T ss_pred             eecccceeeEcCCCCEeeeeeeccCCCCCCCChh
Confidence            11               14689999999988775

>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]

Probab=99.93  E-value=2.7e-25  Score=194.83  Aligned_cols=233  Identities=23%  Similarity=0.213  Sum_probs=196.0

Q ss_pred             CCcccccc-----ccccCC----CeEEEEeCCCCC-CCchhhHHHHHHHHhchHhc------------------------
Q psy5622          21 WFNSKKSH-----LSELTK----MEIFLKKDFFQV-TGSFKERGACYALLMLSEDQ------------------------   66 (269)
Q Consensus        21 ~TPl~~~~-----l~~~~g----~~i~~K~E~~np-tGS~K~R~a~~~l~~~~~~~------------------------   66 (269)
                      .+||++.+     |.+++.    .++|+|++++.| +||.|.|+..|-+....++.                        
T Consensus        78 ES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~~F  157 (443)
T COG3048          78 ESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFKDF  157 (443)
T ss_pred             ccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHHHH
Confidence            78888654     444332    389999999999 69999999888776543321                        


Q ss_pred             -CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCee-ec
Q psy5622          67 -KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTY-IN  144 (269)
Q Consensus        67 -~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~-~~  144 (269)
                       ....|...|+||.|.|+....+++|+++++.|+.++..+|++.+|..|.+|+....||..+++..++-++..+..| ++
T Consensus       158 Fs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~DY~~AVeeGRk~a~~DP~c~FiD  237 (443)
T COG3048         158 FSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQDYGVAVEEGRKEAESDPNCFFID  237 (443)
T ss_pred             HHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecchhhHHHHHhhhhhccCCceEEec
Confidence             1235888999999999999999999999999999999999999999999999999999999999999888877544 55


Q ss_pred             CCCCCCccccCCCCcchhccchhHHHHHHhhcC---------CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEE
Q psy5622         145 GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA---------NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVD  215 (269)
Q Consensus       145 ~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~---------~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~v  215 (269)
                      +          .+......||...+..+-.|+.         .|-.|..|||.||...|++.++|..+      +.++++
T Consensus       238 D----------E~S~~LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~f------gd~Vhc  301 (443)
T COG3048         238 D----------ENSRTLFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAF------GDHVHC  301 (443)
T ss_pred             c----------cchhhhhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhh------cCceEE
Confidence            5          3334567999999999999985         47789999999999999999999986      889999


Q ss_pred             EEEcCCCChHHHHHHHcCCCCCCCC------cccccccccCCCCCHHHHHHHhhhhcccC
Q psy5622         216 QGVESDRCASFSTAIKHGKPTPVSV------QPTLADGLAVPLVGWNAFETAAPLIDKMF  269 (269)
Q Consensus       216 igVe~~~~~~~~~~~~~g~~~~~~~------~~t~a~gl~~~~~~~~~~~~~~~~~~~~~  269 (269)
                      +-+||..+|||.-.+..|......+      ..|-||||+|+.|+..+-..+.+++|+.+
T Consensus       302 fFaEPthsPcMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~  361 (443)
T COG3048         302 FFAEPTHSPCMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYY  361 (443)
T ss_pred             EEecCCCChHHHHhhhhccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcE
Confidence            9999999999988888886443322      34789999999999988889999998753

>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]

Probab=99.91  E-value=9.5e-24  Score=186.59  Aligned_cols=195  Identities=22%  Similarity=0.238  Sum_probs=153.9

Q ss_pred             cCCcccccc-ccccCCC--eEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622          20 QWFNSKKSH-LSELTKM--EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV   96 (269)
Q Consensus        20 ~~TPl~~~~-l~~~~g~--~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i   96 (269)
                      .+|||+++. |.+.+|.  +||+|.|+..||||+|...|......+..++-...+.+...|.+|.|++++|+.+|++|+|
T Consensus        77 RPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~~rl~TETGAGQWGsAlslA~alf~lk~~V  156 (432)
T COG1350          77 RPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTTETGAGQWGSALSLAAALFGLKATV  156 (432)
T ss_pred             CCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCceeeecccCCchHHHHHHHHHHHhCceeEE
Confidence            699999998 9988875  9999999999999999999999998886555444455578899999999999999999999


Q ss_pred             EEcCC---CcHHHHHHHHHcCCEEEEeCCCHHHH------------------HHHHHHHHhhhC-CeeecCCCCCCcccc
Q psy5622          97 VMPIV---APIMKIQACRRYGATVIVEGADMKEA------------------KNIALKKGAELG-LTYINGYLSSGLSVL  154 (269)
Q Consensus        97 vvp~~---~~~~~~~~l~~~Ga~v~~~~~~~~~~------------------~~~a~~~~~~~~-~~~~~~~~~~~~~~~  154 (269)
                      ||-..   ..+.++-.|+.|||+|+..+++..+.                  +..|.+.+-+++ ..|..+         
T Consensus       157 ~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lG---------  227 (432)
T COG1350         157 FMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLG---------  227 (432)
T ss_pred             EEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecch---------
Confidence            99653   56778889999999999887554433                  333344444433 455444         


Q ss_pred             CCCCcchhccchhHHHHHHhhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH
Q psy5622         155 GYDHPDIMAGQGTVGLEIVDQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS  227 (269)
Q Consensus       155 g~~n~~~~~g~~t~~~EI~~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~  227 (269)
                       .--.....|+..+|.|..+|++    .||.++.|||+|++++|+..-|-.- +..|  ....++|+|+|..|+.|.
T Consensus       228 -SVlnhvllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d-~l~g--~~~~~fiAvep~a~P~lT  300 (432)
T COG1350         228 -SVLNHVLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGD-KLRG--KKETRFIAVEPKACPKLT  300 (432)
T ss_pred             -hHHHHHHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhh-hhcC--CceeEEEEeCCccCCccc
Confidence             2223457899999999988875    6999999999999999999877443 2223  234899999999999885

>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]

Probab=99.90  E-value=1.2e-22  Score=178.74  Aligned_cols=199  Identities=20%  Similarity=0.198  Sum_probs=163.1

Q ss_pred             cceeccccCCcccccc-ccccCCCeEEEEeCCCCC--CCchhhHHHHHHHHhchHhcCCccEEEe--CCChHHHHHHHHH
Q psy5622          13 LGFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQV--TGSFKERGACYALLMLSEDQKKKGVISA--SLGNHAQAMCYHG   87 (269)
Q Consensus        13 ~~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~np--tGS~K~R~a~~~l~~~~~~~~~~~vv~~--SsGN~g~alA~~a   87 (269)
                      +.+.+..++||+-+++ +++.+|++||+|+|++.+  .|.+|.|...+++.++. .++.+++|+.  ..+||.+++|++|
T Consensus         7 ~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal-~~g~dTlvT~GgiQSNh~r~tAavA   85 (323)
T COG2515           7 PRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEAL-RKGADTLVTYGGIQSNHVRQTAAVA   85 (323)
T ss_pred             CccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhh-hcCCcEEEEecccchhHHHHHHHHH
Confidence            4455667799999999 999999999999999965  38899999999998875 6778899994  4599999999999


Q ss_pred             HhcCCCeEEEEcCCC----cHHHHHHHHHcCCEEEEeCCCHH-----HHHHHHHHHHhhhCCeeecCCCCCCccccCCCC
Q psy5622          88 SRLNIPVTVVMPIVA----PIMKIQACRRYGATVIVEGADMK-----EAKNIALKKGAELGLTYINGYLSSGLSVLGYDH  158 (269)
Q Consensus        88 ~~~G~~~~ivvp~~~----~~~~~~~l~~~Ga~v~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n  158 (269)
                      +++|++|+.++....    -..+....+.+|+++..++...+     .....++++.++-+..|+.+        +|..|
T Consensus        86 ~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp--------~GG~~  157 (323)
T COG2515          86 AKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIP--------EGGSS  157 (323)
T ss_pred             HhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEec--------cCCcC
Confidence            999999999996544    12256677789999999984322     22233444444445667666        55689


Q ss_pred             cchhccchhHHHHHHhhcC---CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH
Q psy5622         159 PDIMAGQGTVGLEIVDQVA---NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS  227 (269)
Q Consensus       159 ~~~~~g~~t~~~EI~~ql~---~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~  227 (269)
                      |....||...+.||.+|.+   .+|+||+++|||||.+|+..++...       ++..+|||+...+.....
T Consensus       158 ~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~-------~~~~~ViG~~v~~~~~~~  222 (323)
T COG2515         158 PLGALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQL-------GPDVEVIGIDVSADPEKL  222 (323)
T ss_pred             ccccccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhc-------cCCCceEEEeecCCHHHH
Confidence            9999999999999999987   6999999999999999999999988       899999999998876653

>KOG1395|consensus

Probab=99.90  E-value=1.5e-23  Score=186.74  Aligned_cols=223  Identities=24%  Similarity=0.249  Sum_probs=163.2

Q ss_pred             ccCCcccccc-ccccC--CCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622          19 DQWFNSKKSH-LSELT--KMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT   95 (269)
Q Consensus        19 ~~~TPl~~~~-l~~~~--g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~   95 (269)
                      -.+|||++++ |.+.+  |.+||+|+|++|||||+|...|...+..+++.+++..|.+...|.||.|+|.+|+++|++|+
T Consensus       120 gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGkknviaETGAGQhGvatA~a~a~FGl~C~  199 (477)
T KOG1395|consen  120 GRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGKKNVIAETGAGQHGVATATACAKFGLDCT  199 (477)
T ss_pred             CCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcccceeeccCCCccchHHHHHHHHhCCceE
Confidence            3689999998 88766  56999999999999999999999998888767777777889999999999999999999999


Q ss_pred             EEEcCC---CcHHHHHHHHHcCCEEEEeCC---CHHHHHHHHHHH--HhhhCCeeecCCCCCCccccCCCCcc---hhcc
Q psy5622          96 VVMPIV---APIMKIQACRRYGATVIVEGA---DMKEAKNIALKK--GAELGLTYINGYLSSGLSVLGYDHPD---IMAG  164 (269)
Q Consensus        96 ivvp~~---~~~~~~~~l~~~Ga~v~~~~~---~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~g~~n~~---~~~g  164 (269)
                      |+|..+   ..+-++-.||.+||+|+.+..   ...++...+.++  ..-.-.+|+..      |..| .+|+   ...=
T Consensus       200 v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~g------s~~g-php~pt~vr~f  272 (477)
T KOG1395|consen  200 VYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAG------SAIG-PHPYPTVVRTF  272 (477)
T ss_pred             EEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeec------ccCC-CCCcHHHHHHH
Confidence            999764   455678889999999998863   334444444332  22223455544      1122 2333   2345


Q ss_pred             chhHHHHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCC----ChHHHHHHHcCCC
Q psy5622         165 QGTVGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDR----CASFSTAIKHGKP  235 (269)
Q Consensus       165 ~~t~~~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~----~~~~~~~~~~g~~  235 (269)
                      +.+|+-|-..|..     .||.||.|+|+|++.+|+..-|..        +..++.|+|+..+    ++.+...+..|+.
T Consensus       273 hsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~--------dk~v~~igveaagdg~dtp~hsatltagd~  344 (477)
T KOG1395|consen  273 HSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIR--------DKSVGMIGVEAAGDGVDTPKHSATLTAGDV  344 (477)
T ss_pred             HHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhc--------cchhheeeeeecccccCCcchhceeecccc
Confidence            6778888766642     699999999999999999998864        3467778877655    4555444444443


Q ss_pred             CCC---------------CCcccccccccCCCCCHH
Q psy5622         236 TPV---------------SVQPTLADGLAVPLVGWN  256 (269)
Q Consensus       236 ~~~---------------~~~~t~a~gl~~~~~~~~  256 (269)
                      ...               -..++|..||+.+.++++
T Consensus       345 Gv~hG~~ty~lq~~dGqi~~phsIsAGLdYpGvgPe  380 (477)
T KOG1395|consen  345 GVFHGVTTYVLQDTDGQIFDPHSISAGLDYPGVGPE  380 (477)
T ss_pred             cccccceeeeeeccCCccccCCccccCCCCCCCChh
Confidence            211               125678889988877664

>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli

Probab=95.58  E-value=0.068  Score=44.38  Aligned_cols=99  Identities=14%  Similarity=0.148  Sum_probs=69.6

Q ss_pred             HHHHHHHHHhcCCCe-EEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCC
Q psy5622          80 AQAMCYHGSRLNIPV-TVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDH  158 (269)
Q Consensus        80 g~alA~~a~~~G~~~-~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n  158 (269)
                      |..+..+++.+|.++ .-+.+.+.-..-++.+...|-+|..++++.....+.+..+.++.+..-+..          +.+
T Consensus        13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg----------~~~   82 (172)
T PF03808_consen   13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVG----------YHH   82 (172)
T ss_pred             CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEE----------ecC
Confidence            578899999999887 333344444556667777889999999987777777788888876555544          444


Q ss_pred             cchhccchhHHHHHHhhcC--CCCEEEEecCcchH
Q psy5622         159 PDIMAGQGTVGLEIVDQVA--NIDAIVVPVGGGGL  191 (269)
Q Consensus       159 ~~~~~g~~t~~~EI~~ql~--~~d~vv~p~G~Gg~  191 (269)
                      +..   ...--.+|++++.  +||.|++++|+---
T Consensus        83 g~f---~~~~~~~i~~~I~~~~pdiv~vglG~PkQ  114 (172)
T PF03808_consen   83 GYF---DEEEEEAIINRINASGPDIVFVGLGAPKQ  114 (172)
T ss_pred             CCC---ChhhHHHHHHHHHHcCCCEEEEECCCCHH
Confidence            432   2334455666664  79999999998644

Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process

>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins

Probab=93.03  E-value=0.7  Score=38.30  Aligned_cols=99  Identities=17%  Similarity=0.144  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhcCCCeEEEEcC-CCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCC
Q psy5622          80 AQAMCYHGSRLNIPVTVVMPI-VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDH  158 (269)
Q Consensus        80 g~alA~~a~~~G~~~~ivvp~-~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n  158 (269)
                      |..+..+++.+|.+..--++. +.-+.-++.+...+.+|..++++.+...+.++++.++.+...+..          +.+
T Consensus        11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g----------~~~   80 (171)
T cd06533          11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVG----------YHH   80 (171)
T ss_pred             cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEE----------ecC
Confidence            578899999999873222221 222344556666789999999888777777778888876555443          333


Q ss_pred             cchhccchhHHHHHHhhcC--CCCEEEEecCcchH
Q psy5622         159 PDIMAGQGTVGLEIVDQVA--NIDAIVVPVGGGGL  191 (269)
Q Consensus       159 ~~~~~g~~t~~~EI~~ql~--~~d~vv~p~G~Gg~  191 (269)
                      +..-   ...-.++++++.  +||.|++++|.---
T Consensus        81 g~~~---~~~~~~i~~~I~~~~pdiv~vglG~PkQ  112 (171)
T cd06533          81 GYFG---PEEEEEIIERINASGADILFVGLGAPKQ  112 (171)
T ss_pred             CCCC---hhhHHHHHHHHHHcCCCEEEEECCCCHH
Confidence            3211   111223666665  79999999998543

E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.

>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family

Probab=90.74  E-value=1.4  Score=36.84  Aligned_cols=96  Identities=14%  Similarity=0.071  Sum_probs=60.5

Q ss_pred             HHHHHHHHHhcCCCeEEEEc-CCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCC
Q psy5622          80 AQAMCYHGSRLNIPVTVVMP-IVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDH  158 (269)
Q Consensus        80 g~alA~~a~~~G~~~~ivvp-~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n  158 (269)
                      |..+.++++.+|.+..--++ .+.-..-++.....|.+|..++++...+.+.++++.++.+..-+...       .||-+
T Consensus        13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~-------~g~f~   85 (177)
T TIGR00696        13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGA-------FGPLE   85 (177)
T ss_pred             cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEE-------CCCCC
Confidence            46788999999876432222 12222334455567889999998877777788888887654443330       11322


Q ss_pred             cchhccchhHHHHHHhhcC--CCCEEEEecCcc
Q psy5622         159 PDIMAGQGTVGLEIVDQVA--NIDAIVVPVGGG  189 (269)
Q Consensus       159 ~~~~~g~~t~~~EI~~ql~--~~d~vv~p~G~G  189 (269)
                      +       .--.+|.+++.  .+|.++|++|+=
T Consensus        86 ~-------~~~~~i~~~I~~s~~dil~VglG~P  111 (177)
T TIGR00696        86 P-------EERKAALAKIARSGAGIVFVGLGCP  111 (177)
T ss_pred             h-------HHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            2       12245666665  799999999983

The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.

>KOG0025|consensus

Probab=87.17  E-value=4  Score=37.02  Aligned_cols=89  Identities=19%  Similarity=0.063  Sum_probs=65.2

Q ss_pred             eEEEEeCCCCC-----CCchhhHHHHHHHHhchHhcCCccEEE-eCCChHHHHHHHHHHhcCCCeEEEEcCCC-cHHHHH
Q psy5622          36 EIFLKKDFFQV-----TGSFKERGACYALLMLSEDQKKKGVIS-ASLGNHAQAMCYHGSRLNIPVTVVMPIVA-PIMKIQ  108 (269)
Q Consensus        36 ~i~~K~E~~np-----tGS~K~R~a~~~l~~~~~~~~~~~vv~-~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~  108 (269)
                      +-++|.+..-|     |-+.---.|+.+|.+...-.+++.||- +..+--|+++--.|+.+|++.+=++.+.. -++-.+
T Consensus       124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~  203 (354)
T KOG0025|consen  124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKK  203 (354)
T ss_pred             cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHH
Confidence            57788877555     455555668888888765555666665 44456678888889999999999997654 345567


Q ss_pred             HHHHcCCEEEEeCCCH
Q psy5622         109 ACRRYGATVIVEGADM  124 (269)
Q Consensus       109 ~l~~~Ga~v~~~~~~~  124 (269)
                      +++.+||+-++.+...
T Consensus       204 ~Lk~lGA~~ViTeeel  219 (354)
T KOG0025|consen  204 QLKSLGATEVITEEEL  219 (354)
T ss_pred             HHHHcCCceEecHHHh
Confidence            8899999999887543

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=85.59  E-value=4.7  Score=34.38  Aligned_cols=50  Identities=14%  Similarity=0.185  Sum_probs=41.0

Q ss_pred             EEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622          71 VISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG  121 (269)
Q Consensus        71 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~  121 (269)
                      +|...+|+.|..++.+....+.++.+++.+. +....+.++..|++++..+
T Consensus         2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d   51 (233)
T PF05368_consen    2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEAD   51 (233)
T ss_dssp             EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-
T ss_pred             EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeecc
Confidence            5678899999999999888999999999766 4556677888999988554

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional

Probab=84.94  E-value=5.2  Score=35.19  Aligned_cols=96  Identities=11%  Similarity=0.136  Sum_probs=54.7

Q ss_pred             HHHHHHHHHhc--CCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCC
Q psy5622          80 AQAMCYHGSRL--NIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYD  157 (269)
Q Consensus        80 g~alA~~a~~~--G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~  157 (269)
                      |..+.++++.+  |.+..-+...+.-..-++.....|-+|..++++...+.+.++++.++.+...+..       -.||.
T Consensus        69 G~gvv~~~~~~~~~~~~~Rv~G~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~-------~~Gyf  141 (243)
T PRK03692         69 GISVVRSIRKKYPQAQVSRVAGADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGS-------QDGYF  141 (243)
T ss_pred             CHHHHHHHHHhcCCCCCCeeChHHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEE-------eCCCC
Confidence            34666776665  4331111121222333444556788999999887777777777777664322211       01233


Q ss_pred             CcchhccchhHHHHHHhhcC--CCCEEEEecCcc
Q psy5622         158 HPDIMAGQGTVGLEIVDQVA--NIDAIVVPVGGG  189 (269)
Q Consensus       158 n~~~~~g~~t~~~EI~~ql~--~~d~vv~p~G~G  189 (269)
                      ++.       -..+|++++.  .+|.+++++|.-
T Consensus       142 ~~~-------e~~~i~~~I~~s~~dil~VglG~P  168 (243)
T PRK03692        142 TPE-------QRQALFERIHASGAKIVTVAMGSP  168 (243)
T ss_pred             CHH-------HHHHHHHHHHhcCCCEEEEECCCc
Confidence            321       1244666665  799999999873

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=82.43  E-value=14  Score=31.84  Aligned_cols=70  Identities=14%  Similarity=0.125  Sum_probs=39.9

Q ss_pred             cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcC-CEEEEeC-CCHHHHHHHHHHHHhhhC
Q psy5622          70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYG-ATVIVEG-ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~G-a~v~~~~-~~~~~~~~~a~~~~~~~~  139 (269)
                      .+|+.++|.-|.++|......|.++++.-..... +...+.++..+ ...+.++ .+.++..+...+..++.+
T Consensus         3 vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g   75 (259)
T PRK08340          3 VLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLG   75 (259)
T ss_pred             EEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            5788888999999999998999986665433211 11123344344 2223344 344454445555444433

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=82.31  E-value=12  Score=32.97  Aligned_cols=51  Identities=14%  Similarity=0.124  Sum_probs=38.7

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE  120 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~  120 (269)
                      .++++....|..|..++..|+.+|.+.++++  +.++.|++..+.+|++.+..
T Consensus       121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i~  171 (280)
T TIGR03366       121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALAE  171 (280)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEecC
Confidence            4556666679999999999999999855555  44667888899999976543

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=81.79  E-value=20  Score=30.87  Aligned_cols=76  Identities=16%  Similarity=0.121  Sum_probs=55.8

Q ss_pred             hcCCcc-EEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeee
Q psy5622          65 DQKKKG-VISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI  143 (269)
Q Consensus        65 ~~~~~~-vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~  143 (269)
                      +++-+. =|+.++--...++...++.++ ++.|=...-.++...++....||+.++.|+--.+..+    .+.+.+..|+
T Consensus        36 ~gGi~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~~ev~~----~a~~~~ip~~  110 (211)
T COG0800          36 EGGIPAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGLNPEVAK----AANRYGIPYI  110 (211)
T ss_pred             HcCCCeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCCCHHHHH----HHHhCCCccc
Confidence            444333 466888888889999999998 6665445556888999999999999999975555544    4555677777


Q ss_pred             cC
Q psy5622         144 NG  145 (269)
Q Consensus       144 ~~  145 (269)
                      .+
T Consensus       111 PG  112 (211)
T COG0800         111 PG  112 (211)
T ss_pred             CC
Confidence            76

>KOG1201|consensus

Probab=81.34  E-value=17  Score=32.95  Aligned_cols=74  Identities=12%  Similarity=0.067  Sum_probs=54.5

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEE-cCCCcHHHHHHHHHcCCEE--EEeC-CCHHHHHHHHHHHHhhhCCee
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVM-PIVAPIMKIQACRRYGATV--IVEG-ADMKEAKNIALKKGAELGLTY  142 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivv-p~~~~~~~~~~l~~~Ga~v--~~~~-~~~~~~~~~a~~~~~~~~~~~  142 (269)
                      ...+|+.+++-.|+++|.--++.|-+.++.= ......+..+.++..| ++  ..++ .+.+|..+.+.+.-++.|...
T Consensus        39 ~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis~~eei~~~a~~Vk~e~G~V~  116 (300)
T KOG1201|consen   39 EIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG-EAKAYTCDISDREEIYRLAKKVKKEVGDVD  116 (300)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC-ceeEEEecCCCHHHHHHHHHHHHHhcCCce
Confidence            4457888888899999999999998554432 2234455667777777 55  4566 788999999999999988544

>PRK06720 hypothetical protein; Provisional

Probab=80.92  E-value=20  Score=29.41  Aligned_cols=70  Identities=6%  Similarity=-0.036  Sum_probs=38.1

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcH-HHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhh
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPI-MKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAE  137 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~  137 (269)
                      +..+|+..++--|.++|......|.+++++-...... .-.+.++..|.++..+  + .+..+..+...+..++
T Consensus        17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~   90 (169)
T PRK06720         17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNA   90 (169)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            3457777777889999988888888766654322111 1123344456554433  2 2344444444443333

>PRK07814 short chain dehydrogenase; Provisional

Probab=80.83  E-value=18  Score=31.29  Aligned_cols=32  Identities=9%  Similarity=0.061  Sum_probs=26.0

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEc
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMP   99 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp   99 (269)
                      +..+|+..+|--|.+++......|.+++++..
T Consensus        11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r   42 (263)
T PRK07814         11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAAR   42 (263)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence            45688888899999999988888998776654

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=80.78  E-value=13  Score=32.05  Aligned_cols=72  Identities=11%  Similarity=0.043  Sum_probs=47.0

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..+|.-|.++|......|.+++++-.........+.+...|.++..+  + .+.++..+...+..++.+
T Consensus         9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (260)
T PRK12823          9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFG   83 (260)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            45688888999999999999999998776654322223334555667777544  3 455555555565555543

>cd08230 glucose_DH Glucose dehydrogenase

Probab=80.28  E-value=7.5  Score=35.49  Aligned_cols=51  Identities=16%  Similarity=0.060  Sum_probs=40.2

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEE
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVI  118 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~  118 (269)
                      .++++....|..|...+.+|+.+|.+++++.+...++.|++.++.+|++.+
T Consensus       173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v  223 (355)
T cd08230         173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV  223 (355)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence            345555567999999999999999986666665557788899999999974

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=80.24  E-value=11  Score=31.76  Aligned_cols=64  Identities=17%  Similarity=0.096  Sum_probs=40.7

Q ss_pred             cEEE-eCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCC
Q psy5622          70 GVIS-ASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGL  140 (269)
Q Consensus        70 ~vv~-~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~  140 (269)
                      ++++ .|||-+|.++|..+...|.+++++..+..-+.      -.+.+++.+.. ..|-.+.+.+..++.+.
T Consensus        21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~s-a~em~~~~~~~~~~~Di   85 (185)
T PF04127_consen   21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVES-AEEMLEAVKELLPSADI   85 (185)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SS-HHHHHHHHHHHGGGGSE
T ss_pred             eEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEecc-hhhhhhhhccccCccee
Confidence            4555 89999999999999999999999997642111      24777777765 34555666666665543

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	269
3iau_A	366	The Structure Of The Processed Form Of Threonine De		3e-33
3l6b_A	346	X-Ray Crystal Structure Of Human Serine Racemase In		8e-28
1tdj_A	514	Threonine Deaminase (Biosynthetic) From E. Coli Len		1e-25
2gn0_B	342	Crystal Structure Of Dimeric Biodegradative Threoni		4e-23
1v71_A	323	Crystal Structure Of S.pombe Serine Racemase Length		3e-22
3l6r_A	346	The Structure Of Mammalian Serine Racemase: Evidenc		2e-18
3hmk_A	339	Crystal Structure Of Serine Racemase Length = 339		3e-18
1ve5_A	311	Crystal Structure Of T.Th. Hb8 Threonine Deaminase		1e-14
1pwe_A	327	Rat Liver L-Serine Dehydratase Apo Enzyme Length =		2e-10
2zsj_A	352	Crystal Structure Of Threonine Synthase From Aquife		5e-07
1o58_A	303	Crystal Structure Of O-Acetylserine Sulfhydrylase (		3e-06
4h27_A	364	Modulating The Function Of Human Serine Racemase An		2e-05
3fca_A	291	Genetic Incorporation Of A Metal-Ion Chelating Amin		3e-05
2rkb_A	318	Serine Dehydratase Like-1 From Human Cancer Cells L		7e-05
2d1f_A	360	Structure Of Mycobacterium Tuberculosis Threonine S		2e-04
1p5j_A	372	Crystal Structure Analysis Of Human Serine Dehydrat		4e-04

>pdb|3IAU|A Chain A, The Structure Of The Processed Form Of Threonine Deaminase Isoform 2 From Solanum Lycopersicum Length = 366

Iteration: 1
 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/240 (37%), Positives = 123/240 (51%), Gaps = 17/240 (7%)
Query: 29  LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGS 88
           LS+   +  ++K++  Q   SF  RGA   +  LS ++  KGVI+AS GNHAQ +   G 
Sbjct: 69  LSDRLGVNFYIKREDKQRVFSFXLRGAYNMMSNLSREELDKGVITASAGNHAQGVALAGQ 128
Query: 89  RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLS 148
           RLN    +VMP   P +KI A R  G  V++ G    EA+  AL+   + GL YI     
Sbjct: 129 RLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFDEAQTHALELSEKDGLKYIP---- 184
Query: 149 SGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGT 208
                  +D P ++ GQGT+G EI  Q+ +I A+ +PVGGGGLIAGVA     I      
Sbjct: 185 ------PFDDPGVIKGQGTIGTEINRQLKDIHAVFIPVGGGGLIAGVATFFKQIAPNTKI 238
Query: 209 VGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLIDKM 268
           +       GVE    AS + ++  G    +S   T ADG+AV LVG   F     LID M
Sbjct: 239 I-------GVEPYGAASMTLSLHEGHRVKLSNVDTFADGVAVALVGEYTFAKCQELIDGM 291

>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In Complex Malonate A Potent Inhibitor Length = 346

Iteration: 1
 Score =  120 bits (301), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 86/247 (34%), Positives = 133/247 (53%), Gaps = 22/247 (8%)
Query: 27  SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSED---QKKKGVISASLGNHAQAM 83
           S L++LT   +F K + FQ TGSFK RGA  A+  L  D   +K K V++ S GNH QA+
Sbjct: 32  SILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSSGNHGQAL 91
Query: 84  CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143
            Y      IP  +V+P  AP  K  A + YGA+++      +  +N+A +   E      
Sbjct: 92  TYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAKRVTEE------ 145
Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIM 203
               + G+ V     P ++AGQGT+ LE+++QV  +DA+VVPVGGGG++AG+A     + 
Sbjct: 146 ----TEGIMVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVPVGGGGMLAGIAI---TVK 198
Query: 204 AGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQP-TLADGLAVPLVGWNAFETAA 262
           A + +V +   +    +D C  + + +K GK  P    P T+ADG+    +G N +    
Sbjct: 199 ALKPSVKVYAAEPS-NADDC--YQSKLK-GKLMPNLYPPETIADGVKSS-IGLNTWPIIR 253
Query: 263 PLIDKMF 269
            L+D +F
Sbjct: 254 DLVDDIF 260

>pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli Length = 514

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/245 (34%), Positives = 127/245 (51%), Gaps = 17/245 (6%)
Query: 24  SKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAM 83
            K   LS      I +K++  Q   SFK RGA   +  L+E+QK  GVI+AS GNHAQ +
Sbjct: 35  QKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGV 94
Query: 84  CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143
            +  +RL +   +VMP     +K+ A R +G  V++ GA+  EAK  A++   + G T+ 
Sbjct: 95  AFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTW- 153
Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIM 203
                    V  +DHP ++AGQGT+ LE++ Q A++D + VPVGGGGL AGVA     +M
Sbjct: 154 ---------VPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLM 204
Query: 204 AGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAP 263
                   +I    VE++  A    A+  G P  +      A+G+AV  +G   F     
Sbjct: 205 P-------QIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQE 257
Query: 264 LIDKM 268
            +D +
Sbjct: 258 YLDDI 262

>pdb|1V71|A Chain A, Crystal Structure Of S.pombe Serine Racemase Length = 323

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 83/149 (55%), Gaps = 10/149 (6%)
Query: 36  EIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT 95
           E+F K + FQ  G+FK RGA  AL  L+E Q+K GV++ S GNHAQA+      L IP  
Sbjct: 42  EVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLTFSSGNHAQAIALSAKILGIPAK 101
Query: 96  VVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLG 155
           ++MP+ AP  K+ A + YG  VI+      + + +A +     GLT I            
Sbjct: 102 IIMPLDAPEAKVAATKGYGGQVIMYDRYKDDREKMAKEISEREGLTIIP----------P 151
Query: 156 YDHPDIMAGQGTVGLEIVDQVANIDAIVV 184
           YDHP ++AGQGT   E+ ++V  +DA+ V
Sbjct: 152 YDHPHVLAGQGTAAKELFEEVGPLDALFV 180

>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For Conformational Changes Upon Inhibitor Binding Length = 346

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 13/157 (8%)
Query: 27  SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSED---QKKKGVISASLGNHAQAM 83
           S L++LT   +F K + FQ TGSF  RGA  A+  L  D   +K K V++ S GNH QA+
Sbjct: 32  SILNQLTGRNLFFKCELFQKTGSFXIRGALNAVRSLVPDALERKPKAVVTHSSGNHGQAL 91
Query: 84  CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143
            Y      IP  +V+P  AP  K  A + YGA+++      +  +N+A +   E      
Sbjct: 92  TYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAKRVTEE------ 145
Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANID 180
               + G+ V     P ++AGQGT+ LE+++QV  +D
Sbjct: 146 ----TEGIXVHPNQEPAVIAGQGTIALEVLNQVPLVD 178

>pdb|3HMK|A Chain A, Crystal Structure Of Serine Racemase Length = 339

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/247 (34%), Positives = 131/247 (53%), Gaps = 22/247 (8%)
Query: 27  SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQ---KKKGVISASLGNHAQAM 83
           S L+++    +F K + FQ TGSFK RGA  A+  L  D    K K V++ S GNH QA+
Sbjct: 32  SILNQIAGRNLFFKCELFQKTGSFKIRGALNAIRGLIPDTLEGKPKAVVTHSSGNHGQAL 91
Query: 84  CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143
            Y      IP  +V+P  AP  K  A + YGA+++      +  +N+A +   E      
Sbjct: 92  TYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASIVYSEPSDESRENVAQRIIQE------ 145
Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIM 203
               + G+ V     P ++AGQGT+ LE+++QV  +DA+VVPVGGGG++AG+A     I 
Sbjct: 146 ----TEGILVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVPVGGGGMVAGIAI---TIK 198
Query: 204 AGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQP-TLADGLAVPLVGWNAFETAA 262
             + +V +   +    +D C  + + +K G+ TP    P T+ADG+    +G N +    
Sbjct: 199 TLKPSVKVYAAEPS-NADDC--YQSKLK-GELTPNLHPPETIADGVKSS-IGLNTWPIIR 253
Query: 263 PLIDKMF 269
            L+D +F
Sbjct: 254 DLVDDVF 260

>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase Length = 311

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 71/149 (47%), Gaps = 17/149 (11%)
Query: 42  DFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIV 101
           +  Q TGSFK RGA    L L   +  KG+++ S GNHAQ + Y    L +   VVMP  
Sbjct: 42  EHLQKTGSFKARGALSKALAL---ENPKGLLAVSSGNHAQGVAYAAQVLGVKALVVMPED 98
Query: 102 APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDI 161
           A   K    R YGA V+  G   K  + +A     E G   I+           +D P +
Sbjct: 99  ASPYKKACARAYGAEVVDRGVTAKNREEVARALQEETGYALIH----------PFDDPLV 148
Query: 162 MAGQGTVGLEIVDQVANI----DAIVVPV 186
           +AGQGT GLE++ Q   +     A++ PV
Sbjct: 149 IAGQGTAGLELLAQAGRMGVFPGAVLAPV 177

>pdb|1PWE|A Chain A, Rat Liver L-Serine Dehydratase Apo Enzyme Length = 327

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 110/260 (42%), Gaps = 37/260 (14%)
Query: 1   MSALKSVHCGQDLGFVIRDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALL 60
           M+A +S+H    L    RD         LS++    +FLK D  Q +GSFK RG  + L 
Sbjct: 1   MAAQESLHVKTPL----RDSM------ALSKVAGTSVFLKMDSSQPSGSFKIRGIGH-LC 49
Query: 61  MLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE 120
            +   Q  K  + +S GN   A  Y   RL +P T+V+P   P + I+  +  GATV V 
Sbjct: 50  KMKAKQGCKHFVCSSAGNAGMATAYAARRLGLPATIVVPSTTPALTIERLKNEGATVEVV 109
Query: 121 GADMKEAKNIALKKGAEL---GLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA 177
           G  + EA  I L K  E    G  YI+           +D P I  G  ++  E+ + ++
Sbjct: 110 GEMLDEA--IQLAKALEKNNPGWVYIS----------PFDDPLIWEGHTSLVKELKETLS 157
Query: 178 NIDAIVVPVGGGGLIAGVAYDHPDIMAGQG--TVGLEIVD-QGVESDRCASFSTAIKHGK 234
                      G ++  V          QG   VG E V    +E+    SF  A+K GK
Sbjct: 158 --------AKPGAIVLSVGGGGLLCGVVQGLREVGWEDVPIIAMETFGAHSFHAAVKEGK 209
Query: 235 PTPVSVQPTLADGLAVPLVG 254
              +    ++A  L V  VG
Sbjct: 210 LVTLPKITSVAKALGVNTVG 229

>pdb|2ZSJ|A Chain A, Crystal Structure Of Threonine Synthase From Aquifex Aeolicus Vf5 Length = 352

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 90/216 (41%), Gaps = 27/216 (12%)
Query: 34  KMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIP 93
           K +I+LK +    TGSFK+RG   A+    E   K+ VI AS GN + +   + +R  + 
Sbjct: 46  KGKIYLKYEGLNPTGSFKDRGMTLAISKAVE-AGKRAVICASTGNTSASAAAYAARAGLR 104
Query: 94  VTVVMPIVA-PIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLS 152
             V++P  A  I K+     YGA V+       +A NI  K G    +  +N        
Sbjct: 105 AYVLLPKGAVAIGKLSQAMIYGAKVLAIQGTFDDALNIVRKIGENFPVEIVNSV------ 158
Query: 153 VLGYDHPDIMAGQGTVGLEIVDQVANI-DAIVVPVGGGGLIAG------VAYDH------ 199
                +P  + GQ T   EI D +    D   +PVG  G I        + Y+       
Sbjct: 159 -----NPYRIEGQKTAAFEICDTLGEAPDYHFIPVGNAGNITAYWKGFKIYYEEGKITKL 213
Query: 200 PDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKP 235
           P +M  Q      IV +G       + +TAIK G P
Sbjct: 214 PRMMGWQAEGAAPIV-KGYPIKNPQTIATAIKIGNP 248

>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665) From Thermotoga Maritima At 1.80 A Resolution Length = 303

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 19/167 (11%)
Query: 36  EIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSRLNI 92
            IFLK +     GS K+R A +  ++L  +++   K G++  + GN   A+   G++   
Sbjct: 32  RIFLKLEKNNPGGSVKDRPALF--MILDAEKRGLLKNGIVEPTSGNMGIAIAMIGAKRGH 89
Query: 93  PVTVVMPIVAPIMKIQACRRYGATVIVEGAD--MKEAKNIALKKGAELGLTYINGYLSSG 150
            V + MP    + + +  +  GA +++   +  MK A   AL+   E G   +N      
Sbjct: 90  RVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEISRETGAHMLN------ 143
Query: 151 LSVLGYDHP-DIMAGQGTVGLEIVDQV-ANIDAIVVPVGGGGLIAGV 195
                +++P ++ + Q T G EI+ Q+   IDA V  VG GG I+GV
Sbjct: 144 ----QFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGV 186

>pdb|4H27|A Chain A, Modulating The Function Of Human Serine Racemase And Human Serine Dehydratase By Protein Engineering Length = 364

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 29  LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGV---ISASLGNHAQAMCY 85
           LS++    ++LK D  Q +GSF  RG  +      +   K+G    + +S GN   A  Y
Sbjct: 55  LSKMAGTSVYLKMDSAQPSGSFXIRGIGH----FCKRWAKQGCAHFVCSSSGNAGMAAAY 110
Query: 86  HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIA 131
              +L +P T+V+P   P + I+  +  GATV V G  + EA  +A
Sbjct: 111 AARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELLDEAFELA 156

>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid Into Proteins As Biophysical Probe Length = 291

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 19/167 (11%)
Query: 36  EIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSRLNI 92
            I LK +     GS K+R A +  ++L  +++   K G++  + GN   A+   G++   
Sbjct: 20  RIXLKLEKNNPGGSVKDRPALF--MILDAEKRGLLKNGIVEPTSGNMGIAIAMIGAKRGH 77
Query: 93  PVTVVMPIVAPIMKIQACRRYGATVIVEGAD--MKEAKNIALKKGAELGLTYINGYLSSG 150
            V + MP    + + +  +  GA +++   +  MK A   AL+   E G   +N      
Sbjct: 78  RVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEISRETGAHMLN------ 131
Query: 151 LSVLGYDHP-DIMAGQGTVGLEIVDQV-ANIDAIVVPVGGGGLIAGV 195
                +++P ++ + Q T G EI+ Q+   IDA V  VG GG I+GV
Sbjct: 132 ----QFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGV 174

>pdb|2RKB|A Chain A, Serine Dehydratase Like-1 From Human Cancer Cells Length = 318

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 25/151 (16%)
Query: 29  LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKG---VISASLGNHAQAMCY 85
           LS++  M +FLK +  Q +GSFK RG  +      ++  KKG   ++ +S GN   A  Y
Sbjct: 16  LSQVAGMPVFLKCENVQPSGSFKIRGIGH----FCQEMAKKGCRHLVCSSGGNAGIAAAY 71
Query: 86  HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKE----AKNIALKKGAELGLT 141
              +L IP T+V+P    +  +Q  +  GA V + G    E    A+ +A + G E    
Sbjct: 72  AARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDEANLRAQELAKRDGWE---- 127
Query: 142 YINGYLSSGLSVLGYDHPDIMAGQGTVGLEI 172
                     +V  +DHP I  G  ++  E+
Sbjct: 128 ----------NVPPFDHPLIWKGHASLVQEL 148

>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine Synthase Length = 360

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 15/169 (8%)
Query: 27  SHLSELTKMEIFLKKDFFQVTGSFKERGACYALL-MLSEDQKKKGVISASLGNHAQAMCY 85
           ++LS+ T   I LK +    TGSFK+RG   A+   L+  Q  + V+ AS GN + +   
Sbjct: 45  TNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ--RAVLCASTGNTSASAAA 102
Query: 86  HGSRLNIPVTVVMPIVAPIM-KIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYIN 144
           + +R  I   V++P     M K+     +GA +I    +  +   +A K  A+       
Sbjct: 103 YAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFDDCLELARKMAADF------ 156
Query: 145 GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANI-DAIVVPVGGGGLI 192
                 +S++   +P  + GQ T   EIVD +    D   +PVG  G I
Sbjct: 157 ----PTISLVNSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGNAGNI 201

>pdb|1P5J|A Chain A, Crystal Structure Analysis Of Human Serine Dehydratase Length = 372

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 29  LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGV---ISASLGNHAQAMCY 85
           LS++    ++LK D  Q +GSFK RG  +      +   K+G    + +S GN   A  Y
Sbjct: 55  LSKMAGTSVYLKMDSAQPSGSFKIRGIGH----FCKRWAKQGCAHFVCSSAGNAGMAAAY 110
Query: 86  HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIA 131
              +L +P T+V+P   P + I+  +  GAT  V G  + EA  +A
Sbjct: 111 AARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDEAFELA 156

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
2gn0_A	342	Threonine dehydratase catabolic; TDCB, biodegradat	2e-85
1v71_A	323	Serine racemase, hypothetical protein C320.14 in c	2e-83
3l6b_A	346	Serine racemase; pyridoxal phosphate, PLP, isomera	5e-78
1ve5_A	311	Threonine deaminase; riken structural genomics/Pro	2e-75
3iau_A	366	Threonine deaminase; pyridoxal phosphate, amino-ac	9e-74
1tdj_A	514	Biosynthetic threonine deaminase; allostery, coope	2e-73
2rkb_A	318	Serine dehydratase-like; PLP bound enzyme, enzyme	1e-71
1p5j_A	372	L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo	4e-71
4d9i_A	398	Diaminopropionate ammonia-lyase; fold type II PLP-	7e-46
3ss7_X	442	D-serine dehydratase; type II fold, ALFA,beta-elim	2e-43
1e5x_A	486	Threonine synthase; threonine biosynthesis, PLP en	6e-29
2d1f_A	360	Threonine synthase; amino acid synthesis, pyridoxa	3e-28
3aey_A	351	Threonine synthase; PLP, pyridoxal phosphate, lyas	4e-28
2zsj_A	352	Threonine synthase; PLP dependent enzyme, lyase; H	2e-26
1j0a_A	325	1-aminocyclopropane-1-carboxylate deaminase; PLP d	6e-05

>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Length = 323

 Score =  252 bits (645), Expect = 2e-83
 Identities = 79/247 (31%), Positives = 121/247 (48%), Gaps = 25/247 (10%)

Query: 27  SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYH 86
           S +++    E+F K + FQ  G+FK RGA  AL  L+E Q+K GV++ S GNHAQA+   
Sbjct: 33  STVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLTFSSGNHAQAIALS 92

Query: 87  GSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGY 146
              L IP  ++MP+ AP  K+ A + YG  VI+      + + +A +     GLT I   
Sbjct: 93  AKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRYKDDREKMAKEISEREGLTIIP-- 150

Query: 147 LSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVA----YDHPDI 202
                    YDHP ++AGQGT   E+ ++V  +DA+ V +GGGGL++G A    +  P+ 
Sbjct: 151 --------PYDHPHVLAGQGTAAKELFEEVGPLDALFVCLGGGGLLSGSALAARHFAPNC 202

Query: 203 MAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAA 262
                    E+   GVE +       + + G    +    T+ADG     +G   F    
Sbjct: 203 ---------EVY--GVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYTFSIIK 251

Query: 263 PLIDKMF 269
             +D + 
Sbjct: 252 EKVDDIL 258

>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A* Length = 346

 Score =  238 bits (611), Expect = 5e-78
 Identities = 81/251 (32%), Positives = 123/251 (49%), Gaps = 30/251 (11%)

Query: 27  SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSED---QKKKGVISASLGNHAQAM 83
           S L++LT   +F K + FQ TGSFK RGA  A+  L  D   +K K V++ S GNH QA+
Sbjct: 32  SILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSSGNHGQAL 91

Query: 84  CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143
            Y      IP  +V+P  AP  K  A + YGA+++      +  +N+A +   E     +
Sbjct: 92  TYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAKRVTEETEGIMV 151

Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVA----YDH 199
           +              P ++AGQGT+ LE+++QV  +DA+VVPVGGGG++AG+A       
Sbjct: 152 H----------PNQEPAVIAGQGTIALEVLNQVPLVDALVVPVGGGGMLAGIAITVKALK 201

Query: 200 PDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQP-TLADGLAVPLVGWNAF 258
           P +         ++     E         +   GK  P    P T+ADG+   + G N +
Sbjct: 202 PSV---------KVY--AAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSSI-GLNTW 249

Query: 259 ETAAPLIDKMF 269
                L+D +F
Sbjct: 250 PIIRDLVDDIF 260

>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Length = 311

 Score =  230 bits (590), Expect = 2e-75
 Identities = 77/251 (30%), Positives = 111/251 (44%), Gaps = 33/251 (13%)

Query: 27  SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYH 86
             L  L    + LK +  Q TGSFK RGA    L L   +  KG+++ S GNHAQ + Y 
Sbjct: 27  RLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALAL---ENPKGLLAVSSGNHAQGVAYA 83

Query: 87  GSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGY 146
              L +   VVMP  A   K    R YGA V+  G   K  + +A     E G   I+  
Sbjct: 84  AQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVTAKNREEVARALQEETGYALIH-- 141

Query: 147 LSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANI----DAIVVPVGGGGLIAGVA----YD 198
                    +D P ++AGQGT GLE++ Q   +     A++ PVGGGGL+AG+A      
Sbjct: 142 --------PFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKAL 193

Query: 199 HPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQP-TLADGLAVPLVGWNA 257
            P            ++  GVE +       +++ G+   +   P T ADG+    +G   
Sbjct: 194 SPTT---------LVL--GVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLGERT 242

Query: 258 FETAAPLIDKM 268
           F      +D +
Sbjct: 243 FPILRERVDGI 253

>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Length = 366

 Score =  228 bits (584), Expect = 9e-74
 Identities = 93/245 (37%), Positives = 127/245 (51%), Gaps = 25/245 (10%)

Query: 28  HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHG 87
            LS+   +  ++K++  Q   SFK RGA   +  LS ++  KGVI+AS GNHAQ +   G
Sbjct: 68  KLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREELDKGVITASAGNHAQGVALAG 127

Query: 88  SRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYL 147
            RLN    +VMP   P +KI A R  G  V++ G    EA+  AL+   + GL YI    
Sbjct: 128 QRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFDEAQTHALELSEKDGLKYIP--- 184

Query: 148 SSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVA----YDHPDIM 203
                   +D P ++ GQGT+G EI  Q+ +I A+ +PVGGGGLIAGVA       P+  
Sbjct: 185 -------PFDDPGVIKGQGTIGTEINRQLKDIHAVFIPVGGGGLIAGVATFFKQIAPNT- 236

Query: 204 AGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAP 263
                   +I+  GVE    AS + ++  G    +S   T ADG+AV LVG   F     
Sbjct: 237 --------KII--GVEPYGAASMTLSLHEGHRVKLSNVDTFADGVAVALVGEYTFAKCQE 286

Query: 264 LIDKM 268
           LID M
Sbjct: 287 LIDGM 291

>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Length = 514

 Score =  232 bits (594), Expect = 2e-73
 Identities = 83/245 (33%), Positives = 127/245 (51%), Gaps = 25/245 (10%)

Query: 28  HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHG 87
            LS      I +K++  Q   SFK RGA   +  L+E+QK  GVI+AS GNHAQ + +  
Sbjct: 39  KLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSS 98

Query: 88  SRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYL 147
           +RL +   +VMP     +K+ A R +G  V++ GA+  EAK  A++   + G T++    
Sbjct: 99  ARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVP--- 155

Query: 148 SSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVA----YDHPDIM 203
                   +DHP ++AGQGT+ LE++ Q A++D + VPVGGGGL AGVA       P I 
Sbjct: 156 -------PFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQI- 207

Query: 204 AGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAP 263
                   +++   VE++  A    A+  G P  +      A+G+AV  +G   F     
Sbjct: 208 --------KVI--AVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQE 257

Query: 264 LIDKM 268
            +D +
Sbjct: 258 YLDDI 262

>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Length = 318

 Score =  221 bits (566), Expect = 1e-71
 Identities = 57/247 (23%), Positives = 95/247 (38%), Gaps = 28/247 (11%)

Query: 28  HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHG 87
            LS++  M +FLK +  Q +GSFK RG  +    +++ +  + ++ +S GN   A  Y  
Sbjct: 15  ALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAK-KGCRHLVCSSGGNAGIAAAYAA 73

Query: 88  SRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYL 147
            +L IP T+V+P    +  +Q  +  GA V + G    EA   A +     G   +    
Sbjct: 74  RKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDEANLRAQELAKRDGWENVP--- 130

Query: 148 SSGLSVLGYDHPDIMAGQGTVGLEIVDQVAN--IDAIVVPVGGGGLIAGVAY----DHPD 201
                   +DHP I  G  ++  E+   +       ++   GGG L   VA         
Sbjct: 131 -------PFDHPLIWKGHASLVQELKAVLRTPPGALVLAVGGGGLLAGVVAGLLEVGWQH 183

Query: 202 IMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETA 261
           +          I+   +E+     F+ AI  GK   +    ++A  L    V   A E  
Sbjct: 184 V---------PII--AMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAKTVAARALECM 232

Query: 262 APLIDKM 268
                  
Sbjct: 233 QVCKIHS 239

>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Length = 372

 Score =  222 bits (567), Expect = 4e-71
 Identities = 64/248 (25%), Positives = 100/248 (40%), Gaps = 29/248 (11%)

Query: 28  HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHG 87
            LS++    ++LK D  Q +GSFK RG  +     ++ Q     + +S GN   A  Y  
Sbjct: 54  ALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAK-QGCAHFVCSSAGNAGMAAAYAA 112

Query: 88  SRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAE-LGLTYINGY 146
            +L +P T+V+P   P + I+  +  GAT  V G  + EA  +A        G  YI   
Sbjct: 113 RQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDEAFELAKALAKNNPGWVYIP-- 170

Query: 147 LSSGLSVLGYDHPDIMAGQGTVGLEIVDQV-ANIDAIVVPVGGGGLIAGVA-----YDHP 200
                    +D P I  G  ++  E+ + +     AI + VGGGGL+ GV          
Sbjct: 171 --------PFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWG 222

Query: 201 DIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFET 260
           D+          ++   +E+    SF  A   GK   +    ++A  L V  VG  A + 
Sbjct: 223 DV---------PVI--AMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGSQALKL 271

Query: 261 AAPLIDKM 268
                   
Sbjct: 272 FQEHPIFS 279

>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Length = 398

 Score =  157 bits (399), Expect = 7e-46
 Identities = 46/265 (17%), Positives = 89/265 (33%), Gaps = 33/265 (12%)

Query: 27  SHLSELTKM-EIFLKKDFFQV-TGSFKERGACYALLMLSEDQ------------------ 66
             L+ L  + +I +K +  +    +F   G  YA+  L  ++                  
Sbjct: 51  DDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSFEHLKNAIG 110

Query: 67  KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKE 126
           +K    + + GNH + + +   +L     + MP  +   ++ A    GA  IV   +  +
Sbjct: 111 EKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDD 170

Query: 127 AKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVAN----IDAI 182
              + ++   + G   +      G +        IM G  T+  E V+Q+         +
Sbjct: 171 TVRLTMQHAQQHGWEVVQDTAWEGYT---KIPTWIMQGYATLADEAVEQMREMGVTPTHV 227

Query: 183 VVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQ- 241
           ++  G G +  GV     D+ + Q       +   VE D+      +   G    V    
Sbjct: 228 LLQAGVGAMAGGVLGYLVDVYSPQNL---HSI--IVEPDKADCIYRSGVKGDIVNVGGDM 282

Query: 242 PTLADGLAVPLVGWNAFETAAPLID 266
            T+  GLA        +E       
Sbjct: 283 ATIMAGLACGEPNPLGWEILRNCAT 307

>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Length = 442

 Score =  151 bits (384), Expect = 2e-43
 Identities = 56/279 (20%), Positives = 81/279 (29%), Gaps = 70/279 (25%)

Query: 36  EIFLKKD-FFQVTGSFKERGACYALLMLSEDQ-------------------------KKK 69
           ++ LKKD    ++GS K RG  Y +L  +E                            + 
Sbjct: 102 QLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQY 161

Query: 70  GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKN 129
            +   S GN   ++    +R+   VTV M   A   K    R +G TV+    D   A  
Sbjct: 162 SIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVE 221

Query: 130 IALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDA-------- 181
              K        +          +   +   +  G    G  +  Q A            
Sbjct: 222 EGRKAAQSDPNCFF---------IDDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPL 272

Query: 182 -IVVPVGGGGLIAGVAY-------DHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHG 233
            + +P G GG   GVA+       DH                   E          +  G
Sbjct: 273 FVYLPCGVGGGPGGVAFGLKLAFGDHVHCF-------------FAEPTHSPCMLLGVHTG 319

Query: 234 KPTPVSVQ------PTLADGLAVPLVGWNAFETAAPLID 266
               +SVQ       T ADGLAV             L+D
Sbjct: 320 LHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLD 358

>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Length = 486

 Score =  113 bits (284), Expect = 6e-29
 Identities = 47/230 (20%), Positives = 83/230 (36%), Gaps = 31/230 (13%)

Query: 36  EIFLKKDFFQVTGSFKERGACYALLMLSEDQKK----KGVISASLGNHAQAMCYHGSRLN 91
           ++++K      TGSFK+ G    +  ++  +K      GV  AS G+ + A+  + +   
Sbjct: 148 DLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG 207

Query: 92  IPVTVVMPIVAPIM-KIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSG 150
           IP  V +P     M ++      GA V+    D      +  +  AEL +   N      
Sbjct: 208 IPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMKLIREITAELPIYLANSL---- 263

Query: 151 LSVLGYDHPDIMAGQGTVGLEIVDQVANI--DAIVVPVGGGGLIAGVAYDHPDIMAGQGT 208
                  +   + GQ T  +EI+ Q      D ++VP G  G I             +  
Sbjct: 264 -------NSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFY------KGFKXC 310

Query: 209 VGLEIVDQ-----GVESDRCASFSTAIKHGK--PTPVSVQPTLADGLAVP 251
             L +VD+       ++          K G     P++   T A  + + 
Sbjct: 311 QELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIG 360

>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Length = 360

 Score =  110 bits (276), Expect = 3e-28
 Identities = 55/232 (23%), Positives = 92/232 (39%), Gaps = 32/232 (13%)

Query: 28  HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHG 87
           +LS+ T   I LK +    TGSFK+RG   A+        ++ V+ AS GN + +   + 
Sbjct: 46  NLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALA-HGQRAVLCASTGNTSASAAAYA 104

Query: 88  SRLNIPVTVVMPIVAPIM-KIQACRRYGATVI-VEGADMKEAKNIALKKGAELGLTYING 145
           +R  I   V++P     M K+     +GA +I ++G +  +   +A K  A+     +  
Sbjct: 105 ARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDG-NFDDCLELARKMAADFPTISLVN 163

Query: 146 YLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANI-DAIVVPVGGGGLIAGVAYDHPDIMA 204
            +          +P  + GQ T   EIVD +    D   +PVG  G I            
Sbjct: 164 SV----------NPVRIEGQKTAAFEIVDVLGTAPDVHALPVGNAGNITAYW------KG 207

Query: 205 GQGTVGLEIVDQ-----GVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVP 251
                 L ++D+     G ++   A            PVS   T+A  + + 
Sbjct: 208 YTEYHQLGLIDKLPRMLGTQAAGAAPLVLG------EPVSHPETIATAIRIG 253

>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Length = 351

 Score =  109 bits (274), Expect = 4e-28
 Identities = 52/236 (22%), Positives = 88/236 (37%), Gaps = 33/236 (13%)

Query: 24  SKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAM 83
            K    +    + ++ K +    TGSFK+RG   A+    E    + V  AS GN A + 
Sbjct: 34  LKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVE-GGAQAVACASTGNTAASA 92

Query: 84  CYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVI-VEGADMKEAKNIALKKGAELGLT 141
             + +R  I   VV+P     + K+     +GA ++ VEG +  +A  +  K      + 
Sbjct: 93  AAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEG-NFDDALRLTQKLTEAFPVA 151

Query: 142 YINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANI-DAIVVPVGGGGLIAGVAYDHP 200
            +N             +P  + GQ T+  E+VD++ +      +PVG  G I        
Sbjct: 152 LVNSV-----------NPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNITAHW---- 196

Query: 201 DIMAGQGTVGLEIVDQ-----GVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVP 251
             M  +    L    +     G ++   A            PV    TLA  + + 
Sbjct: 197 --MGYKAYHALGKAKRLPRMLGFQAAGAAPLVLG------RPVERPETLATAIRIG 244

>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Length = 352

 Score =  104 bits (262), Expect = 2e-26
 Identities = 55/226 (24%), Positives = 89/226 (39%), Gaps = 33/226 (14%)

Query: 34  KMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIP 93
           K +I+LK +    TGSFK+RG   A+    E   K+ VI AS GN + +   + +R  + 
Sbjct: 46  KGKIYLKYEGLNPTGSFKDRGMTLAISKAVE-AGKRAVICASTGNTSASAAAYAARAGLR 104

Query: 94  VTVVMPIVAP-IMKIQACRRYGATVI-VEGADMKEAKNIALKKGAELGLTYINGYLSSGL 151
             V++P  A  I K+     YGA V+ ++G    +A NI  K G    +  +N       
Sbjct: 105 AYVLLPKGAVAIGKLSQAMIYGAKVLAIQG-TFDDALNIVRKIGENFPVEIVNSV----- 158

Query: 152 SVLGYDHPDIMAGQGTVGLEIVDQVANI-DAIVVPVGGGGLIAGVAYDHPDIMAGQGTVG 210
                 +P  + GQ T   EI D +    D   +PVG  G I             +    
Sbjct: 159 ------NPYRIEGQKTAAFEICDTLGEAPDYHFIPVGNAGNITAYW------KGFKIYYE 206

Query: 211 LEIVDQ-----GVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVP 251
              + +     G +++  A            P+    T+A  + + 
Sbjct: 207 EGKITKLPRMMGWQAEGAAPIVKGY------PIKNPQTIATAIKIG 246

>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Length = 325

 Score = 42.7 bits (100), Expect = 6e-05
 Identities = 42/195 (21%), Positives = 63/195 (32%), Gaps = 16/195 (8%)

Query: 27  SHLSELTKMEIFLKKDFFQ--VTGSFKERGACYALL-MLSEDQKKKGVISASLGNHAQAM 83
            ++S     ++++K+D       G  K R   Y L   LS+       + A   NHA   
Sbjct: 28  PNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVITVGAVHSNHAFVT 87

Query: 84  CYHGSRLNIPVTVVM---PIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGL 140
                +L +   +V+     +     +         V     D  E    A +   EL  
Sbjct: 88  GLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAK-DSFELMKYAEEIAEELKR 146

Query: 141 TYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV-ANIDAIVVPVGGG----GLIAGV 195
                Y+       G   P    G      EI  Q     D+IVV  G G    GL  G+
Sbjct: 147 EGRKPYVIPP----GGASPIGTLGYVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGL 202

Query: 196 AYDHPDIMAGQGTVG 210
           +  + DI      VG
Sbjct: 203 SILNEDIRPVGIAVG 217

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
2gn0_A	342	Threonine dehydratase catabolic; TDCB, biodegradat	100.0
1v71_A	323	Serine racemase, hypothetical protein C320.14 in c	100.0
3l6b_A	346	Serine racemase; pyridoxal phosphate, PLP, isomera	100.0
1tdj_A	514	Biosynthetic threonine deaminase; allostery, coope	100.0
3iau_A	366	Threonine deaminase; pyridoxal phosphate, amino-ac	100.0
4h27_A	364	L-serine dehydratase/L-threonine deaminase; PLP de	100.0
2rkb_A	318	Serine dehydratase-like; PLP bound enzyme, enzyme	100.0
1ve5_A	311	Threonine deaminase; riken structural genomics/Pro	100.0
1p5j_A	372	L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo	100.0
4d9i_A	398	Diaminopropionate ammonia-lyase; fold type II PLP-	100.0
3ss7_X	442	D-serine dehydratase; type II fold, ALFA,beta-elim	100.0
3aey_A	351	Threonine synthase; PLP, pyridoxal phosphate, lyas	100.0
2zsj_A	352	Threonine synthase; PLP dependent enzyme, lyase; H	100.0
2d1f_A	360	Threonine synthase; amino acid synthesis, pyridoxa	100.0
3vc3_A	344	Beta-cyanoalnine synthase; beta-cyanoalanine synth	100.0
1y7l_A	316	O-acetylserine sulfhydrylase, O-acetylserine (thio	100.0
3tbh_A	334	O-acetyl serine sulfhydrylase; cysteine synthase,	100.0
1e5x_A	486	Threonine synthase; threonine biosynthesis, PLP en	100.0
1z7w_A	322	Cysteine synthase; transferase; HET: PLP; 2.20A {A	100.0
3dwg_A	325	Cysteine synthase B; sulfur carrier protein comple	100.0
4aec_A	430	Cysteine synthase, mitochondrial; lyase, cysteine	100.0
2q3b_A	313	Cysteine synthase A; pyridoxal-5'-phosphate, sulph	100.0
1ve1_A	304	O-acetylserine sulfhydrylase; PLP, transferase, ri	100.0
2v03_A	303	Cysteine synthase B; pyridoxal phosphate, cysteine	100.0
2egu_A	308	Cysteine synthase; O-acetylserine sulfhydrase, str	100.0
2pqm_A	343	Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8	100.0
4d9b_A	342	D-cysteine desulfhydrase; fold type II PLP-depende	100.0
1o58_A	303	O-acetylserine sulfhydrylase; TM0665, structural g	100.0
1j0a_A	325	1-aminocyclopropane-1-carboxylate deaminase; PLP d	100.0
1f2d_A	341	1-aminocyclopropane-1-carboxylate deaminase; carbo	100.0
1jbq_A	435	B, cystathionine beta-synthase, serine sulfhydrase	100.0
1tzj_A	338	ACC deaminase, 1-aminocyclopropane-1-carboxylate d	100.0
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	100.0
1x1q_A	418	Tryptophan synthase beta chain; structural genomic	100.0
1v8z_A	388	Tryptophan synthase beta chain 1; beta+alpha, rike	100.0
1qop_B	396	Tryptophan synthase beta chain; lyase, carbon-oxyg	100.0
1wkv_A	389	Cysteine synthase; homodimer, open alpha/beta fold	100.0
2o2e_A	422	Tryptophan synthase beta chain; amino-acid biosynt	100.0
1vb3_A	428	Threonine synthase; PLP-dependent enzyme, lyase; H	100.0
4f4f_A	468	Threonine synthase; structural genomics, niaid, na	100.0
1kl7_A	514	Threonine synthase; threonine synthesis, pyridoxal	100.0
3v7n_A	487	Threonine synthase; ssgcid, structural genomics, s	100.0
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.38
1vp8_A	201	Hypothetical protein AF0103; putative pyruvate kin	91.15
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	90.42
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	89.61
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	88.49
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	87.38
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	86.96
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	86.91
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	85.84
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	85.69
3o74_A	272	Fructose transport system repressor FRUR; dual tra	85.08
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	85.07
3c85_A	183	Putative glutathione-regulated potassium-efflux S	84.93
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	84.03
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	83.47
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	83.44
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	83.39
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	83.06
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	82.79
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	82.52
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	82.45
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	82.43
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	82.42
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	82.15
1t57_A	206	Conserved protein MTH1675; structural genomics, FM	82.15
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	82.06
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	82.05
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	81.97
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	81.33
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	81.31
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	81.27
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	81.23
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	81.09
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	81.07
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	81.04
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	80.93
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	80.86
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	80.85
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	80.83
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	80.77
3k4h_A	292	Putative transcriptional regulator; structural gen	80.52
3cxt_A	291	Dehydrogenase with different specificities; rossma	80.3
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	80.14

>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A*

Probab=100.00  E-value=2.2e-52  Score=379.80  Aligned_cols=234  Identities=33%  Similarity=0.490  Sum_probs=217.9

Q ss_pred             cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622          18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV   96 (269)
Q Consensus        18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i   96 (269)
                      ..++|||++++ |++..|.+||+|+|++|||||||||++.+++.++.++.+..+||++|+||||+|+|++|+++|++|++
T Consensus        23 ~i~~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~KdRga~~~i~~~~~~~~~~~vv~~ssGN~g~alA~~a~~~G~~~~i  102 (323)
T 1v71_A           23 FANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLTFSSGNHAQAIALSAKILGIPAKI  102 (323)
T ss_dssp             TSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHTTCCHHHHHHCEEECCSSHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCCCCceEhHhhHHHhCCeEEEEecCCCCcCCHHHHHHHHHHHHHHHhcCCCeEEEeCCCcHHHHHHHHHHHcCCCEEE
Confidence            45899999998 98888999999999999999999999999998876555667899999999999999999999999999


Q ss_pred             EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622          97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV  176 (269)
Q Consensus        97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql  176 (269)
                      |||+++++.|+++++.|||+|+.++++++++.+.+++++++.+++|+++          |+||.+++||.|++.||++|+
T Consensus       103 v~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~l~~~~~~~~i~~----------~~n~~~~~g~~t~~~Ei~~q~  172 (323)
T 1v71_A          103 IMPLDAPEAKVAATKGYGGQVIMYDRYKDDREKMAKEISEREGLTIIPP----------YDHPHVLAGQGTAAKELFEEV  172 (323)
T ss_dssp             EEETTCCHHHHHHHHHTTCEEEEECTTTTCHHHHHHHHHHHHTCBCCCS----------SSSHHHHHHHTHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEecCC----------CCCcchhhhHhHHHHHHHHhc
Confidence            9999999999999999999999999888889999999999999999988          899999999999999999999


Q ss_pred             CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHH
Q psy5622         177 ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN  256 (269)
Q Consensus       177 ~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~  256 (269)
                      +.+|+||+|+|+||+++|++.++|++       +|.+++|+|||.+++++.++++.|++...+..+|+++|+.++.++..
T Consensus       173 ~~~d~vv~~vG~GGt~~Gi~~~~k~~-------~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~  245 (323)
T 1v71_A          173 GPLDALFVCLGGGGLLSGSALAARHF-------APNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNY  245 (323)
T ss_dssp             CCCSEEEEECSSSHHHHHHHHHHHHH-------CTTCEEEEEEEGGGCHHHHHHHHTSCCCCCCCCCSCTTSCCSSCCHH
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHHc-------CCCCEEEEEEeCCCchHHHHHHcCCceecCCCCcccccccCCCCcHH
Confidence            99999999999999999999999999       89999999999999999999999987665556799999999888988


Q ss_pred             HHHHHhhhhccc
Q psy5622         257 AFETAAPLIDKM  268 (269)
Q Consensus       257 ~~~~~~~~~~~~  268 (269)
                      +|+.+++++|++
T Consensus       246 ~~~~~~~~~~~~  257 (323)
T 1v71_A          246 TFSIIKEKVDDI  257 (323)
T ss_dssp             HHHHHHHHCCEE
T ss_pred             HHHHHHHhCCEE
Confidence            999999888875

>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*

Probab=100.00  E-value=8.9e-52  Score=379.21  Aligned_cols=234  Identities=34%  Similarity=0.503  Sum_probs=216.0

Q ss_pred             cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHh---cCCccEEEeCCChHHHHHHHHHHhcCCC
Q psy5622          18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSED---QKKKGVISASLGNHAQAMCYHGSRLNIP   93 (269)
Q Consensus        18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~---~~~~~vv~~SsGN~g~alA~~a~~~G~~   93 (269)
                      ..++|||++++ |++.+|.+||+|+|++|||||||||++.+++.++.+.   .+.++||++|+||||+|+|++|+++|++
T Consensus        22 ~i~~TPL~~~~~l~~~~g~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~vv~~SsGNhg~a~A~aa~~~G~~  101 (346)
T 3l6b_A           22 SIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGIP  101 (346)
T ss_dssp             GSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHHTTC-----CCCSCEEEECSSHHHHHHHHHHHHTTCC
T ss_pred             ccCCCCeEEchhhHHHhCCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHhccccCCCEEEEeCCCHHHHHHHHHHHHhCCC
Confidence            45799999998 9988899999999999999999999999999998654   3667899999999999999999999999


Q ss_pred             eEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHH
Q psy5622          94 VTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIV  173 (269)
Q Consensus        94 ~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~  173 (269)
                      |+||||+++++.|+++++.|||+|+.++++++++.+.+++++++.+++|+++          ++||.+++||.|+++||+
T Consensus       102 ~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~a~~l~~~~~~~~i~~----------~~np~~~~g~~t~~~Ei~  171 (346)
T 3l6b_A          102 AYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAKRVTEETEGIMVHP----------NQEPAVIAGQGTIALEVL  171 (346)
T ss_dssp             EEEEEETTSCHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHTCEECCS----------SSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEEECC----------CCChHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999          889999999999999999


Q ss_pred             hhcCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCC-CcccccccccCCC
Q psy5622         174 DQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVS-VQPTLADGLAVPL  252 (269)
Q Consensus       174 ~ql~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~-~~~t~a~gl~~~~  252 (269)
                      +|++.+|+||+|+|+||+++|++.++|+.       .|.+++|+|||++++++..+++.|++.+.+ ..+|+++||. +.
T Consensus       172 ~q~~~~d~vvv~vG~GG~~aGi~~~~k~~-------~p~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~~tia~gl~-~~  243 (346)
T 3l6b_A          172 NQVPLVDALVVPVGGGGMLAGIAITVKAL-------KPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVK-SS  243 (346)
T ss_dssp             HHSTTCCEEEEECSSSHHHHHHHHHHHHH-------CTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGC-SC
T ss_pred             HhCCCCCEEEEecCccHHHHHHHHHHHHh-------CCCCEEEEEecCCCHHHHHHHHcCCccccCCCCCchhhhcc-CC
Confidence            99999999999999999999999999999       899999999999999999999999876643 3579999998 45


Q ss_pred             CCHHHHHHHhhhhcccC
Q psy5622         253 VGWNAFETAAPLIDKMF  269 (269)
Q Consensus       253 ~~~~~~~~~~~~~~~~~  269 (269)
                      ++...|+.+++++|+++
T Consensus       244 ~g~~~~~~~~~~~d~~~  260 (346)
T 3l6b_A          244 IGLNTWPIIRDLVDDIF  260 (346)
T ss_dssp             CCTTHHHHHHHHCCEEE
T ss_pred             CcHHHHHHHHHcCCeEE
Confidence            67778999999888753

>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2

Probab=100.00  E-value=1.3e-51  Score=393.39  Aligned_cols=237  Identities=35%  Similarity=0.543  Sum_probs=223.9

Q ss_pred             eccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCe
Q psy5622          16 VIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPV   94 (269)
Q Consensus        16 ~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~   94 (269)
                      ....++|||++++ |++.+|.+||+|+|++|||||||||+|.+++..+.++.+..+||++|+||||+|+|++|+++|++|
T Consensus        26 ~~~i~~TPL~~l~~Ls~~~g~~V~lK~E~lqPtgSfKdRgA~n~i~~l~~~~~~~gVV~aSsGNhg~avA~aa~~lGi~~  105 (514)
T 1tdj_A           26 YEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGVKA  105 (514)
T ss_dssp             GGTCCCCCEEECHHHHHHTTSEEEEECGGGSTTSSSTHHHHHHHHHTTTTSSCSSSCEEEECSSSHHHHHHHHHHTTCCE
T ss_pred             hcccCCCCcEEchhhHHhhCCeEEEEECCCCCcccHHHHHHHHHHHHHHHhcCCCEEEEECCcHHHHHHHHHHHHcCCcE
Confidence            3445799999998 999899999999999999999999999999998865666788999999999999999999999999


Q ss_pred             EEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHh
Q psy5622          95 TVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVD  174 (269)
Q Consensus        95 ~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~  174 (269)
                      +||||.+++..|+++++.|||+|+.++++++++.+.+++++++.+++|+++          |+||.+++||.|++.||++
T Consensus       106 ~IvmP~~~p~~Kv~~~r~~GAeVvlv~~~~dda~~~a~ela~e~g~~~v~p----------fdnp~~iaGqgTig~EI~e  175 (514)
T 1tdj_A          106 LIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVPP----------FDHPMVIAGQGTLALELLQ  175 (514)
T ss_dssp             EEECCSSCCHHHHHHHHHHSCEEECCCSSHHHHHHHHHHHHHHHCCEECCS----------SCCHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEeeCC----------CCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999          8999999999999999999


Q ss_pred             hcCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCC
Q psy5622         175 QVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVG  254 (269)
Q Consensus       175 ql~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~  254 (269)
                      |++.+|+||+|+|+||+++|++.++|++       .|.+|||||||++++++..+++.|++...+...|++||++++.++
T Consensus       176 Ql~~~D~vvvpvGgGGliaGia~~lk~~-------~P~~kVIgVep~~a~~l~~sl~~G~~~~l~~v~tiadGiav~~~g  248 (514)
T 1tdj_A          176 QDAHLDRVFVPVGGGGLAAGVAVLIKQL-------MPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIG  248 (514)
T ss_dssp             HCTTCCEEEEECSSSHHHHHHHHHHHHH-------CTTCEEEEEEETTTCHHHHHHHHTSCCCCSCCCSSSSTTCCSSCC
T ss_pred             HCCCCCEEEEccCcHHHHHHHHHHHHHh-------CCCCEEEEEeccCChhHHHHHhcCCeeecCCccccccchhcCCCC
Confidence            9988999999999999999999999999       999999999999999999999999988777778999999999999


Q ss_pred             HHHHHHHhhhhcccC
Q psy5622         255 WNAFETAAPLIDKMF  269 (269)
Q Consensus       255 ~~~~~~~~~~~~~~~  269 (269)
                      ..+|+.+++++|+++
T Consensus       249 ~~~~~l~~~~vd~~v  263 (514)
T 1tdj_A          249 DETFRLCQEYLDDII  263 (514)
T ss_dssp             CHHHHHHTTSCCEEE
T ss_pred             hHHHHHHHHhCCeEE
Confidence            999999999998764

>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum}

Probab=100.00  E-value=1.8e-51  Score=379.78  Aligned_cols=235  Identities=39%  Similarity=0.547  Sum_probs=221.7

Q ss_pred             ccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622          17 IRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT   95 (269)
Q Consensus        17 ~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~   95 (269)
                      ...++|||++++ |++.+|.+||+|+|++|||||||||++.+++.++.++++..+|+++|+||||+|+|++|+++|++|+
T Consensus        56 ~~i~~TPL~~l~~l~~~~g~~i~~K~E~~~ptgSfKdRga~~~i~~l~~~~~~~~vv~assGN~g~a~A~aa~~~G~~~~  135 (366)
T 3iau_A           56 DVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREELDKGVITASAGNHAQGVALAGQRLNCVAK  135 (366)
T ss_dssp             GTCCCCCEEECHHHHHHHTSEEEEEEGGGSTTSBTTHHHHHHHHHTSCHHHHHHCEEEECSSHHHHHHHHHHHHTTCCEE
T ss_pred             hhcCCCCcEEhhhhhHhhCCEEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHhCCceE
Confidence            455899999998 9998999999999999999999999999999988655566789999999999999999999999999


Q ss_pred             EEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhh
Q psy5622          96 VVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQ  175 (269)
Q Consensus        96 ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~q  175 (269)
                      ||||++++..|+++++.+||+|+.++++++++.+.+++++++.+++|+++          |+||.+++||.+++.||++|
T Consensus       136 iv~P~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~a~~~~~~~~~~~i~~----------~~n~~~i~g~~t~~~Ei~~q  205 (366)
T 3iau_A          136 IVMPTTTPQIKIDAVRALGGDVVLYGKTFDEAQTHALELSEKDGLKYIPP----------FDDPGVIKGQGTIGTEINRQ  205 (366)
T ss_dssp             EEECTTCCHHHHHHHHHTTCEEEECCSSHHHHHHHHHHHHHHHTCEECCS----------SSSHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHHCCCeEEEECcCHHHHHHHHHHHHHhcCCEecCC----------CCChHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999          89999999999999999999


Q ss_pred             cCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCH
Q psy5622         176 VANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGW  255 (269)
Q Consensus       176 l~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~  255 (269)
                      ++.+|+||+|+|+||+++|++.++|++       +|.+++++|||.+++++.++++.|++.+.+..+|+++||+++.++.
T Consensus       206 ~~~~d~vvvpvG~GG~~~Gi~~~~k~~-------~~~~~vigVe~~~~~~l~~~~~~g~~~~~~~~~tia~gl~~~~~~~  278 (366)
T 3iau_A          206 LKDIHAVFIPVGGGGLIAGVATFFKQI-------APNTKIIGVEPYGAASMTLSLHEGHRVKLSNVDTFADGVAVALVGE  278 (366)
T ss_dssp             CCSEEEEEEECSSSHHHHHHHHHHHHH-------STTSEEEEEEEGGGCHHHHHHHHTSCCEESCCCCSSGGGCCSSCCH
T ss_pred             cCCCCEEEEccCchHHHHHHHHHHHHh-------CCCCeEEEEeecCChHHHHHHHcCCCCcCCCccchhhhhcCCCCcH
Confidence            988999999999999999999999999       8999999999999999999999998876666789999999999999


Q ss_pred             HHHHHHhhhhccc
Q psy5622         256 NAFETAAPLIDKM  268 (269)
Q Consensus       256 ~~~~~~~~~~~~~  268 (269)
                      .+|+.+++++|++
T Consensus       279 ~~~~~~~~~~~~~  291 (366)
T 3iau_A          279 YTFAKCQELIDGM  291 (366)
T ss_dssp             HHHHHHHHHCCEE
T ss_pred             HHHHHHHhcCCCc
Confidence            9999999998875

>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*

Probab=100.00  E-value=9.3e-51  Score=374.78  Aligned_cols=233  Identities=28%  Similarity=0.358  Sum_probs=216.6

Q ss_pred             ccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622          17 IRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT   95 (269)
Q Consensus        17 ~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~   95 (269)
                      ...++|||++++ |++.+|++||+|+|++|||||||||++.+++.++. +.+.++||++|+||||+|+|++|+++|++|+
T Consensus        42 ~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~Rga~~~i~~a~-~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~  120 (364)
T 4h27_A           42 PLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWA-KQGCAHFVCSSSGNAGMAAAYAARQLGVPAT  120 (364)
T ss_dssp             CSSCCCCEEEEHHHHHHHTSEEEEEEGGGSTTSBTHHHHHHHHHHHHH-HTTCCEEEECCSSHHHHHHHHHHHHHTCCEE
T ss_pred             CCCCcCCeEEChhhHHHhCCEEEEEeCCCCCCCCHHHHHHHHHHHHHH-hcCCCEEEEeCCChHHHHHHHHHHHhCCceE
Confidence            345799999998 99888999999999999999999999999999885 4567899999999999999999999999999


Q ss_pred             EEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhh-CCeeecCCCCCCccccCCCCcchhccchhHHHHHHh
Q psy5622          96 VVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVD  174 (269)
Q Consensus        96 ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~  174 (269)
                      ||||++++..|+++++.|||+|+.++++++++.+.+++++++. +++|+++          |+||.+++||.+++.||++
T Consensus       121 iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~a~~~a~~l~~~~~~~~~~~~----------~~np~~~~G~~t~~~Ei~~  190 (364)
T 4h27_A          121 IVVPGTTPALTIERLKNEGATVKVVGELLDEAFELAKALAKNNPGWVYIPP----------FDDPLIWEGHASIVKELKE  190 (364)
T ss_dssp             EEEETTSCHHHHHHHHTTTCEEEEECSSTTHHHHHHHHHHHHSTTEEEECS----------SCSHHHHHHHTHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhCCCeEEeCC----------CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999997 8899999          8999999999999999999


Q ss_pred             hcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCC-CCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCC
Q psy5622         175 QVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVG-LEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPL  252 (269)
Q Consensus       175 ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~-~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~  252 (269)
                      |++ .+|+||+|+|+||+++|++.++|++       + |++++++|||++++++.++++.|++...+...|++++|+++.
T Consensus       191 q~~~~~D~vvvpvG~GG~~aGi~~~~k~~-------~~p~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~tia~gl~~~~  263 (364)
T 4h27_A          191 TLWEKPGAIALSVGGGGLLCGVVQGLQEV-------GWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKT  263 (364)
T ss_dssp             HCSSCCSEEEEECSSSHHHHHHHHHHHHT-------TCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSS
T ss_pred             HhCCCCCEEEEcCCccHHHHHHHHHHHHh-------CCCCCeEEEEecCCChHHHHHHHCCCcccCCCCCcHHHHhCCCC
Confidence            998 6999999999999999999999987       6 789999999999999999999998876666789999999988


Q ss_pred             CCHHHHHHHhhhhcc
Q psy5622         253 VGWNAFETAAPLIDK  267 (269)
Q Consensus       253 ~~~~~~~~~~~~~~~  267 (269)
                      ++..+|+.++++.+.
T Consensus       264 ~~~~~~~~~~~~~~~  278 (364)
T 4h27_A          264 VGAQALKLFQEHPIF  278 (364)
T ss_dssp             CCHHHHHHHTTSCEE
T ss_pred             CcHHHHHHHHhcCCE
Confidence            888899998876543

>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.3e-50  Score=367.18  Aligned_cols=232  Identities=27%  Similarity=0.344  Sum_probs=214.6

Q ss_pred             ccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEE
Q psy5622          19 DQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVV   97 (269)
Q Consensus        19 ~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~iv   97 (269)
                      .++|||++++ |++.+|.+||+|+|++|||||||||++.+++.++.+ .+..+||++|+||||+|+|++|+++|++|++|
T Consensus         5 ~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptgS~K~R~a~~~l~~a~~-~g~~~vv~~ssGN~g~alA~~a~~~G~~~~i~   83 (318)
T 2rkb_A            5 HVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAK-KGCRHLVCSSGGNAGIAAAYAARKLGIPATIV   83 (318)
T ss_dssp             SCCCCEEEEHHHHHHHTSCEEEEEGGGSTTSBTTHHHHHHHHHHHHH-TTCCEEEECCCSHHHHHHHHHHHHHTCCEEEE
T ss_pred             CccCCceehHhhHHHhCCeEEEEecCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEECCchHHHHHHHHHHHcCCCEEEE
Confidence            3599999998 988889999999999999999999999999998864 46889999999999999999999999999999


Q ss_pred             EcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcC
Q psy5622          98 MPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA  177 (269)
Q Consensus        98 vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~  177 (269)
                      ||+++++.|+++|+.|||+|+.++++++++.+.+++++++.+++|+++          ++||.+++||.+++.||++|++
T Consensus        84 ~p~~~~~~k~~~~~~~Ga~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~n~~~~~g~~t~~~Ei~~q~~  153 (318)
T 2rkb_A           84 LPESTSLQVVQRLQGEGAEVQLTGKVWDEANLRAQELAKRDGWENVPP----------FDHPLIWKGHASLVQELKAVLR  153 (318)
T ss_dssp             ECTTCCHHHHHHHHHTTCEEEECCSSHHHHHHHHHHHHHSTTEEECCS----------SCSHHHHHHHHHHHHHHHHHSS
T ss_pred             ECCCCcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCCEEeCC----------CCChhhccchhHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999888899999          8999999999999999999998


Q ss_pred             -CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCC-CCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCH
Q psy5622         178 -NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVG-LEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGW  255 (269)
Q Consensus       178 -~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~-~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~  255 (269)
                       .+|+||+|+|+||+++|++.++|++       + |.+++++|||++++++.++++.|++...+..+|+++||..+.++.
T Consensus       154 ~~~d~vvvpvG~GG~~~Gi~~~~k~~-------~~~~~~vi~ve~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~  226 (318)
T 2rkb_A          154 TPPGALVLAVGGGGLLAGVVAGLLEV-------GWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAKTVAA  226 (318)
T ss_dssp             SCCSEEEEECSSSHHHHHHHHHHHHH-------TCTTSCEEEEEETTBCHHHHHHHHTSCCBCSCCCSSCGGGCCSBCCH
T ss_pred             CCCCEEEEeeCCCcHHHHHHHHHHHh-------CCCCCEEEEEecCCChHHHHHHHcCCcccCCCCCceecccCCCCCCH
Confidence             5999999999999999999999988       6 789999999999999999999998766666789999999888888


Q ss_pred             HHHHHHhhhhccc
Q psy5622         256 NAFETAAPLIDKM  268 (269)
Q Consensus       256 ~~~~~~~~~~~~~  268 (269)
                      ..|+.+++..+++
T Consensus       227 ~~~~~~~~~~~~~  239 (318)
T 2rkb_A          227 RALECMQVCKIHS  239 (318)
T ss_dssp             HHHHHHHHSCEEE
T ss_pred             HHHHHHHHcCCEE
Confidence            8899988776543

>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1

Probab=100.00  E-value=3e-51  Score=370.23  Aligned_cols=233  Identities=33%  Similarity=0.470  Sum_probs=214.2

Q ss_pred             eccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCe
Q psy5622          16 VIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPV   94 (269)
Q Consensus        16 ~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~   94 (269)
                      ....++|||++++ |++.+|.+||+|+|++|||||||||++.+++.++.   +..+||++|+||||+|+|++|+++|++|
T Consensus        15 ~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfKdR~a~~~i~~l~---~~~~vv~~ssGN~g~alA~~a~~~G~~~   91 (311)
T 1ve5_A           15 APYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALE---NPKGLLAVSSGNHAQGVAYAAQVLGVKA   91 (311)
T ss_dssp             GGGSCCCCEEECHHHHHHTTSEEEEEEGGGSGGGBTHHHHHHHHHHHSS---SCCCEEEECSSHHHHHHHHHHHHHTCCE
T ss_pred             hccCCCCCceechhhHHhhCCeEEEEecCCCCcCCcHHHHHHHHHHHhc---CCCeEEEECCCcHHHHHHHHHHHcCCCE
Confidence            3456899999998 98888999999999999999999999999999874   6778999999999999999999999999


Q ss_pred             EEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHh
Q psy5622          95 TVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVD  174 (269)
Q Consensus        95 ~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~  174 (269)
                      +||||+++++.|+++++.|||+|+.++++++++.+.+++++++.+++|+++          |+||.+++||.++++||++
T Consensus        92 ~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~n~~~~~g~~t~~~Ei~~  161 (311)
T 1ve5_A           92 LVVMPEDASPYKKACARAYGAEVVDRGVTAKNREEVARALQEETGYALIHP----------FDDPLVIAGQGTAGLELLA  161 (311)
T ss_dssp             EEECCCC--CCHHHHHHHTTCEEECTTCCTTTHHHHHHHHHHHHCCEECCS----------SSSHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCcEecCC----------CCCcchhhhccHHHHHHHH
Confidence            999999999999999999999999999989999999999999999999999          8999999999999999999


Q ss_pred             hc----CCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCC-Cccccccccc
Q psy5622         175 QV----ANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVS-VQPTLADGLA  249 (269)
Q Consensus       175 ql----~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~-~~~t~a~gl~  249 (269)
                      |+    ..+|+||+|+|+||+++|++.++|++       +|.+++++|||.++++++++++.|++.+.+ ...|+++|+.
T Consensus       162 q~~~~~~~~d~vvvpvG~Gg~~~Gi~~~~k~~-------~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~i~~gl~  234 (311)
T 1ve5_A          162 QAGRMGVFPGAVLAPVGGGGLLAGLATAVKAL-------SPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVR  234 (311)
T ss_dssp             HHHHHTCCCSEEEEECSSSHHHHHHHHHHHHH-------CTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGC
T ss_pred             HHHhcCCCCCEEEEccCchHHHHHHHHHHHHh-------CCCCEEEEEEeCCChHHHHHHHcCCccccCCCCCeeeCcCC
Confidence            99    57999999999999999999999999       899999999999999999999999876655 4679999999


Q ss_pred             CCCCCHHHHHHHhhhhccc
Q psy5622         250 VPLVGWNAFETAAPLIDKM  268 (269)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~  268 (269)
                      ++.++..+|+.+++++|++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~  253 (311)
T 1ve5_A          235 TLSLGERTFPILRERVDGI  253 (311)
T ss_dssp             CSSCCTTTHHHHHHHCCEE
T ss_pred             CCCccHHHHHHHHhcCCEE
Confidence            8878887899998888765

>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*

Probab=100.00  E-value=2.7e-50  Score=372.69  Aligned_cols=234  Identities=28%  Similarity=0.347  Sum_probs=216.3

Q ss_pred             ccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622          17 IRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT   95 (269)
Q Consensus        17 ~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~   95 (269)
                      ...++|||++++ |++.+|.+||+|+|++|||||||||++.+++.++.+ .+..+||++|+||||+|+|++|+++|++|+
T Consensus        42 ~~~~~TPL~~l~~l~~~~g~~i~~K~E~~~ptGSfKdRga~~~l~~a~~-~g~~~vv~aSsGN~g~alA~aa~~~G~~~~  120 (372)
T 1p5j_A           42 PLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAK-QGCAHFVCSSAGNAGMAAAYAARQLGVPAT  120 (372)
T ss_dssp             CSSCCCCEEEEHHHHHHHTSCEEEECGGGSGGGBTTHHHHHHHHHHHHH-TTCCEEEECCSSHHHHHHHHHHHHHTCCEE
T ss_pred             CCCCCCCceEcHhhHHHhCCEEEEEEcCCCCCCChHHHHHHHHHHHHHH-cCCCEEEEeCCCHHHHHHHHHHHHcCCcEE
Confidence            456799999998 988889999999999999999999999999998864 467899999999999999999999999999


Q ss_pred             EEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhh-hCCeeecCCCCCCccccCCCCcchhccchhHHHHHHh
Q psy5622          96 VVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAE-LGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVD  174 (269)
Q Consensus        96 ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~  174 (269)
                      ||||+++++.|+++++.|||+|+.++++++++.+.+++++++ .+++|+++          |+||.+++||.|++.||++
T Consensus       121 iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~a~~~a~~l~~~~~~~~~v~~----------~~n~~~~~G~~t~~~Ei~~  190 (372)
T 1p5j_A          121 IVVPGTTPALTIERLKNEGATCKVVGELLDEAFELAKALAKNNPGWVYIPP----------FDDPLIWEGHASIVKELKE  190 (372)
T ss_dssp             EEECTTCCHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHHSTTEEECCS----------SCCHHHHHHHTHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCCcEEeCC----------CCCHHHHhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988 57888988          8999999999999999999


Q ss_pred             hcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCC-CCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCC
Q psy5622         175 QVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVG-LEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPL  252 (269)
Q Consensus       175 ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~-~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~  252 (269)
                      |++ .+|+||+|+|+||+++|++.++|++       + |.+++|+|||++++++.++++.|++...+...|+++||+++.
T Consensus       191 ql~~~~d~vvvpvG~GG~~~Gi~~~~k~~-------~~p~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~tia~gl~~~~  263 (372)
T 1p5j_A          191 TLWEKPGAIALSVGGGGLLCGVVQGLQEC-------GWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKT  263 (372)
T ss_dssp             HCSSCCSEEEEECSSSHHHHHHHHHHHHT-------TCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSS
T ss_pred             HcCCCCCEEEEecCCchHHHHHHHHHHHh-------CCCCceEEEEecCCChHHHHHHHcCCceecCCCceeecccCCCC
Confidence            998 5999999999999999999999987       6 789999999999999999999998776666689999999988


Q ss_pred             CCHHHHHHHhhhhccc
Q psy5622         253 VGWNAFETAAPLIDKM  268 (269)
Q Consensus       253 ~~~~~~~~~~~~~~~~  268 (269)
                      ++..+|+.+++..+++
T Consensus       264 ~~~~~~~~~~~~~~~~  279 (372)
T 1p5j_A          264 VGSQALKLFQEHPIFS  279 (372)
T ss_dssp             CCHHHHHHHHHSCEEE
T ss_pred             CCHHHHHHHhhcCCEE
Confidence            8888899998877654

>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*

Probab=100.00  E-value=3.4e-49  Score=368.30  Aligned_cols=241  Identities=19%  Similarity=0.230  Sum_probs=212.5

Q ss_pred             ccCCcccccc-ccccCCC-eEEEEeCCCC-CCCchhhHHHHHHHHhchHh-----------------cCCc-cEEEeCCC
Q psy5622          19 DQWFNSKKSH-LSELTKM-EIFLKKDFFQ-VTGSFKERGACYALLMLSED-----------------QKKK-GVISASLG   77 (269)
Q Consensus        19 ~~~TPl~~~~-l~~~~g~-~i~~K~E~~n-ptGS~K~R~a~~~l~~~~~~-----------------~~~~-~vv~~SsG   77 (269)
                      .++|||++++ |++.+|. +||+|+|++| ||||||||++.+++.++.++                 .+.+ +||++|+|
T Consensus        42 ~~~TPL~~~~~l~~~~g~~~i~~K~E~~~~ptgSfK~Rga~~~i~~~~~~~~G~~~~~l~~e~l~~~~~~~~~vv~aSsG  121 (398)
T 4d9i_A           42 YRPTPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSFEHLKNAIGEKMTFATTTDG  121 (398)
T ss_dssp             CCCCCEEECHHHHHHHTSSEEEEEEGGGSTTTTBSTHHHHHHHHHHHHHHHHTCCGGGCCHHHHHHCCSCCCEEEEECSS
T ss_pred             CCCCCceehHHHHHHhCCCcEEEEECCCCCCCCcchhhhhHHHHHHHHHHhhcccccccchhhhhhhccCCCEEEEECCC
Confidence            4699999998 9998995 9999999999 99999999999999987321                 3466 89999999


Q ss_pred             hHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCC
Q psy5622          78 NHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYD  157 (269)
Q Consensus        78 N~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~  157 (269)
                      |||+|+|++|+++|++|+||||+++++.|+++++.|||+|+.++++++++.+.+++++++.+++|+++     .+|+||+
T Consensus       122 Nhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~a~~~a~~~~~~~g~~~v~~-----~~~~g~~  196 (398)
T 4d9i_A          122 NHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDDTVRLTMQHAQQHGWEVVQD-----TAWEGYT  196 (398)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSSCHHHHHHHHHHHHHHHTCEECCS-----SCBTTBC
T ss_pred             HHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEEecC-----cccCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999886     2445576


Q ss_pred             C--cchhccchhHHHHHHhhcC-C---CCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHH
Q psy5622         158 H--PDIMAGQGTVGLEIVDQVA-N---IDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIK  231 (269)
Q Consensus       158 n--~~~~~g~~t~~~EI~~ql~-~---~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~  231 (269)
                      +  +..++||.|++.||++|++ .   ||+||+|+|+||+++|++.++++++   +  .+.+++|+|||++++++.++++
T Consensus       197 ~~~~~~~~G~~t~~~Ei~~q~~~~g~~~d~vvvpvG~GG~~aGi~~~~k~~~---~--~~~~~vigVep~~~~~~~~s~~  271 (398)
T 4d9i_A          197 KIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQAGVGAMAGGVLGYLVDVY---S--PQNLHSIIVEPDKADCIYRSGV  271 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECSSSHHHHHHHHHHHHHH---C--TTSCEEEEEEETTSCHHHHHHH
T ss_pred             CCCchhhhhHHHHHHHHHHHhhhcCCCCCEEEEecCccHHHHHHHHHHHHhc---C--CCCCEEEEEEeCCCchHHHHHH
Confidence            3  6789999999999999997 3   9999999999999999999998762   1  3679999999999999999999


Q ss_pred             cCCCCCCC-CcccccccccCCCCCHHHHHHHhhhhcccC
Q psy5622         232 HGKPTPVS-VQPTLADGLAVPLVGWNAFETAAPLIDKMF  269 (269)
Q Consensus       232 ~g~~~~~~-~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~  269 (269)
                      .|++...+ ..+|+++|++++.|+...|+.+++++|+++
T Consensus       272 ~g~~~~~~~~~~tia~gl~~~~p~~~~~~~~~~~~d~~~  310 (398)
T 4d9i_A          272 KGDIVNVGGDMATIMAGLACGEPNPLGWEILRNCATQFI  310 (398)
T ss_dssp             HTSCCCC------CCTTCCCSSCCHHHHHHHHHHCCEEE
T ss_pred             cCCceecCCCCCceeccccCCCCCHHHHHHHHHcCCeEE
Confidence            99877654 468999999999999999999999998753

>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A

Probab=100.00  E-value=4.4e-48  Score=365.07  Aligned_cols=239  Identities=23%  Similarity=0.197  Sum_probs=209.5

Q ss_pred             eeccccCCcccccc-cc----ccCC----CeEEEEeCCCCC-CCchhhHHHHHHHHhc-----hHhcC------------
Q psy5622          15 FVIRDQWFNSKKSH-LS----ELTK----MEIFLKKDFFQV-TGSFKERGACYALLML-----SEDQK------------   67 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~----~~~g----~~i~~K~E~~np-tGS~K~R~a~~~l~~~-----~~~~~------------   67 (269)
                      .++++++|||++++ |+    +.+|    .+||+|+|++|| |||||||++.+++..+     .+.+.            
T Consensus        72 ~~~g~~~TPL~~~~~l~~~l~~~~g~~~~~~v~lK~E~~~p~tGSfK~Rga~~~i~~l~~~~a~~~G~l~~g~~~~~l~~  151 (442)
T 3ss7_X           72 ATGGIIESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLS  151 (442)
T ss_dssp             GGTTCCCCCEEECHHHHHHHHHHHTCCCCSEEEEEEGGGCTTTSBTHHHHHHHHHHHHHHHHHHHTTSCCTTSCGGGGGS
T ss_pred             ccCCCCCCCcEEhHhhhhHHHHhhCCCcCCeEEEeecCCCCCCCCcHHHHHHHHHHHHhHHHHHHcCCCCCCcchhhhhh
Confidence            45788999999998 77    6655    799999999999 9999999999999863     22222            


Q ss_pred             --------CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhC
Q psy5622          68 --------KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 --------~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~  139 (269)
                              ..+|+++|+||||+|+|++|+++|++|+||||++++..|+.+++.|||+|+.++++++++.+.+++++++.+
T Consensus       152 ~~~r~~~~~~~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~~~~~a~~~a~~~a~~~~  231 (442)
T 3ss7_X          152 PEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVEEGRKAAQSDP  231 (442)
T ss_dssp             HHHHHHHHTSEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESSCHHHHHHHHHHHHHTCT
T ss_pred             hhhhhhccCcEEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhCC
Confidence                    148999999999999999999999999999999999999999999999999999999999999999998875


Q ss_pred             -CeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcC---------CCCEEEEecCcchHHHHHHhHHHHHHhcCCCC
Q psy5622         140 -LTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA---------NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTV  209 (269)
Q Consensus       140 -~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~---------~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~  209 (269)
                       ++|+++          ++++..++||.|++.||++|++         .||+||+|+|+||+++|++.++|+++      
T Consensus       232 ~~~~i~~----------~n~~~~~~G~~t~g~Ei~eQl~~~g~~vD~~~Pd~VvvpvG~GG~~aGi~~~lk~~~------  295 (442)
T 3ss7_X          232 NCFFIDD----------ENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAF------  295 (442)
T ss_dssp             TEEECCT----------TTCHHHHHHHHHHHHHHHHHHHHHTCCCBTTBCEEEEEECSSSHHHHHHHHHHHHHH------
T ss_pred             CceeCCC----------CChHHHHHHHHHHHHHHHHHHHhhcCcccccCCCEEEEEeCCchHHHHHHHHHHHhc------
Confidence             566776          5556789999999999999985         25599999999999999999999852      


Q ss_pred             CCCcEEEEEcCCCChHHHHHHHcCCCCCCC------CcccccccccCCCCCHHHHHHHhhhhcccC
Q psy5622         210 GLEIVDQGVESDRCASFSTAIKHGKPTPVS------VQPTLADGLAVPLVGWNAFETAAPLIDKMF  269 (269)
Q Consensus       210 ~~~~~vigVe~~~~~~~~~~~~~g~~~~~~------~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~  269 (269)
                      ++.+++|+|||++++++..+++.|.+.+..      ..+|+++||+++.++..+|+.+++++|+++
T Consensus       296 ~~~v~vigVep~~~~~~~~~~~~G~~~~~~v~~~g~~~~TiAdgl~v~~~~~~~~~~~~~~~d~~~  361 (442)
T 3ss7_X          296 GDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGFY  361 (442)
T ss_dssp             GGGEEEEEEEETTCCHHHHHHHHSCGGGCBGGGGTCCCCCSCGGGCCSBCCSSHHHHHGGGCCEEE
T ss_pred             CCCCEEEEEEeCCchHHHHHHhcCCCceeeeccCCCchhhHHhhcCCCCCchhHHHHHHhhCCeEE
Confidence            689999999999999999999999865322      357999999999999999999999988763

>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A

Probab=100.00  E-value=2.2e-47  Score=350.63  Aligned_cols=237  Identities=20%  Similarity=0.222  Sum_probs=206.4

Q ss_pred             cceeccccCCccccc--c-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHh
Q psy5622          13 LGFVIRDQWFNSKKS--H-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSR   89 (269)
Q Consensus        13 ~~~~~~~~~TPl~~~--~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~   89 (269)
                      ..+.+++|+|||+++  + |++..|++||+|+|++|||||||||++.+++.++. +.+.++||++|+||||+|+|++|++
T Consensus        20 ~~v~~~~g~TPL~~~~~~~l~~~~g~~v~~K~E~~~ptgS~KdR~a~~~l~~a~-~~g~~~vv~~SsGN~g~alA~~a~~   98 (351)
T 3aey_A           20 PVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAV-EGGAQAVACASTGNTAASAAAYAAR   98 (351)
T ss_dssp             CCCCSCCCCCCEEECCCCHHHHTTTCEEEEEEGGGSTTSBTTHHHHHHHHHHHH-HTTCSEEEESCSSHHHHHHHHHHHH
T ss_pred             CceecCCCCCCeeecCchhhHHHhCCeEEEEecCCCCcccHHHHHHHHHHHHHH-hcCCCEEEEeCCCHHHHHHHHHHHH
Confidence            457889999999999  8 88888999999999999999999999999999885 5667899999999999999999999


Q ss_pred             cCCCeEEEEcCC-CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhH
Q psy5622          90 LNIPVTVVMPIV-APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTV  168 (269)
Q Consensus        90 ~G~~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~  168 (269)
                      +|++|+||||++ ++..|+++++.+||+|+.++++++++.+.+++++++.+++|+++           +||.+++||.++
T Consensus        99 ~G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~a~~l~~~~~~~~~~~-----------~n~~~~~g~~t~  167 (351)
T 3aey_A           99 AGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFDDALRLTQKLTEAFPVALVNS-----------VNPHRLEGQKTL  167 (351)
T ss_dssp             HTSEEEEEEETTCSCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEECST-----------TCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCcEecCC-----------CCccceeeeeeH
Confidence            999999999998 99999999999999999999999999999999999888777765           789999999999


Q ss_pred             HHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCccccccc
Q psy5622         169 GLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADG  247 (269)
Q Consensus       169 ~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g  247 (269)
                      +.||++|++ .+|+||+|+|+||+++|++.++|+. ...|++.+.+++++|||.+++++.    .|++..  ..+|+++|
T Consensus       168 ~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~-~~~G~~~~~~~vigve~~~~~~~~----~g~~~~--~~~t~a~g  240 (351)
T 3aey_A          168 AFEVVDELGDAPHYHALPVGNAGNITAHWMGYKAY-HALGKAKRLPRMLGFQAAGAAPLV----LGRPVE--RPETLATA  240 (351)
T ss_dssp             HHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHH-HHHTSCSSCCEEEEEEEGGGCHHH----HTSCCS--SCCCSCGG
T ss_pred             HHHHHHHcCCCCCEEEEecCchHHHHHHHHHHHHH-HhccccCCCCeEEEEecCCCChhh----cCcccC--CccchhHh
Confidence            999999997 6899999999999999999999987 344555567999999999998874    455443  24689999


Q ss_pred             ccCCCCCH--HHHHHHhhhhccc
Q psy5622         248 LAVPLVGW--NAFETAAPLIDKM  268 (269)
Q Consensus       248 l~~~~~~~--~~~~~~~~~~~~~  268 (269)
                      |+++.+..  .+++.+++++|++
T Consensus       241 l~~~~~~~~~~~~~~~~~~~~~~  263 (351)
T 3aey_A          241 IRIGNPASWQGAVRAKEESGGVI  263 (351)
T ss_dssp             GCCSSCTTHHHHHHHHHHHTCEE
T ss_pred             hcCCCCCCHHHHHHHHHHhCCeE
Confidence            98776543  2344566665543

>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}

Probab=100.00  E-value=2.2e-47  Score=350.75  Aligned_cols=237  Identities=24%  Similarity=0.286  Sum_probs=206.2

Q ss_pred             cceeccccCCcccccc-ccccCCCe--EEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHh
Q psy5622          13 LGFVIRDQWFNSKKSH-LSELTKME--IFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSR   89 (269)
Q Consensus        13 ~~~~~~~~~TPl~~~~-l~~~~g~~--i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~   89 (269)
                      ..+.+.+|+|||++++ |++..|++  ||+|+|++|||||||||++.+++.++. +.+..+||++|+||||+|+|++|++
T Consensus        22 ~~v~~~~g~TPL~~~~~l~~~~g~~~~i~~K~E~~~ptGS~KdR~a~~~l~~a~-~~g~~~vv~~SsGN~g~alA~~a~~  100 (352)
T 2zsj_A           22 PIVTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAV-EAGKRAVICASTGNTSASAAAYAAR  100 (352)
T ss_dssp             CCCCCCCCCCCEEECHHHHHHHTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHH-HTTCCEEEECCSSHHHHHHHHHHHH
T ss_pred             CceecccCCCCCeehHHHHHHhCCCceEEEEECCCCCCccHHHHHHHHHHHHHH-hcCCCEEEEeCCchHHHHHHHHHHh
Confidence            4578899999999998 88888988  999999999999999999999999985 5567899999999999999999999


Q ss_pred             cCCCeEEEEcCC-CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhH
Q psy5622          90 LNIPVTVVMPIV-APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTV  168 (269)
Q Consensus        90 ~G~~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~  168 (269)
                      +|++|+||||++ ++..|+++++.|||+|+.++++++++.+.+++++++.+++|+++           +||.+++||.++
T Consensus       101 ~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~a~~l~~~~~~~~~~~-----------~n~~~~~g~~t~  169 (352)
T 2zsj_A          101 AGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQGTFDDALNIVRKIGENFPVEIVNS-----------VNPYRIEGQKTA  169 (352)
T ss_dssp             HTCEEEEEEEGGGCCHHHHHHHHHTTCEEEEESSCHHHHHHHHHHHHHHSSEEECST-----------TCTHHHHHHTHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCcEECCC-----------CCcchhhhHhHH
Confidence            999999999998 99999999999999999999999999999999999888777765           789999999999


Q ss_pred             HHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCccccccc
Q psy5622         169 GLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADG  247 (269)
Q Consensus       169 ~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g  247 (269)
                      +.||++|++ .+|+||+|+|+||+++|++.++|+. ...|++.+.+++++|||.+++++.    .|++..  ..+|+++|
T Consensus       170 ~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~-~~~G~~~~~~~vigve~~~~~~~~----~g~~~~--~~~t~a~g  242 (352)
T 2zsj_A          170 AFEICDTLGEAPDYHFIPVGNAGNITAYWKGFKIY-YEEGKITKLPRMMGWQAEGAAPIV----KGYPIK--NPQTIATA  242 (352)
T ss_dssp             HHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHH-HHTTSCSSCCEEEEEEETTBCHHH----HTSCCS--SCCCSCGG
T ss_pred             HHHHHHHcCCCCCEEEEeCCCcHHHHHHHHHHHHH-HhcCCCCCCCEEEEEecCCCcHHh----cCCccC--CCcchhHH
Confidence            999999997 6899999999999999999999987 445666667999999999998874    455443  24689999


Q ss_pred             ccCCCCCH--HHHHHHhhhhccc
Q psy5622         248 LAVPLVGW--NAFETAAPLIDKM  268 (269)
Q Consensus       248 l~~~~~~~--~~~~~~~~~~~~~  268 (269)
                      |+++.+..  .+++.++++.|++
T Consensus       243 l~~~~~~~~~~~~~~~~~~~~~~  265 (352)
T 2zsj_A          243 IKIGNPYSWKSALKAAQESGGKI  265 (352)
T ss_dssp             GCCSSCTTHHHHHHHHHHHTCEE
T ss_pred             hcCCCCCcHHHHHHHHHHhCCeE
Confidence            98876543  2344555555543

>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2e-47  Score=352.07  Aligned_cols=237  Identities=23%  Similarity=0.279  Sum_probs=206.0

Q ss_pred             cceeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcC
Q psy5622          13 LGFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLN   91 (269)
Q Consensus        13 ~~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G   91 (269)
                      ..+.+++|+|||++++ |++.+|++||+|+|++|||||||||++.+++.++. +.+..+||++|+||||+|+|++|+++|
T Consensus        30 ~~v~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfKdR~a~~~l~~a~-~~g~~~vv~aSsGN~g~alA~~a~~~G  108 (360)
T 2d1f_A           30 TPVTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDAL-AHGQRAVLCASTGNTSASAAAYAARAG  108 (360)
T ss_dssp             CCCCCCCCCCCEEECHHHHHHHSSEEEEEEGGGSTTSBTTHHHHHHHHHHHH-HTTCSEEEECCSSHHHHHHHHHHHHHT
T ss_pred             CccccccCCCCCeechhhHHHhCCeEEEEECCCCCCcCHHHHHHHHHHHHHH-HCCCCEEEEeCCcHHHHHHHHHHHHcC
Confidence            3578899999999998 98888999999999999999999999999999885 566789999999999999999999999


Q ss_pred             CCeEEEEcCC-CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhC-CeeecCCCCCCccccCCCCcchhccchhHH
Q psy5622          92 IPVTVVMPIV-APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELG-LTYINGYLSSGLSVLGYDHPDIMAGQGTVG  169 (269)
Q Consensus        92 ~~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~  169 (269)
                      ++|+||||++ +++.|+++++.|||+|+.++++++++.+.+++++++.+ .+++++           +||.+++||.+++
T Consensus       109 ~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~a~~l~~~~~~~~~i~~-----------~n~~~~~g~~t~~  177 (360)
T 2d1f_A          109 ITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFDDCLELARKMAADFPTISLVNS-----------VNPVRIEGQKTAA  177 (360)
T ss_dssp             CEEEEEECSSCCCHHHHHHHHHTTCEEEEBSSCHHHHHHHHHHHHHHCTTEEECST-----------TCHHHHHHHTHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCeEEcCC-----------CChhhhhhHHHHH
Confidence            9999999998 99999999999999999999999999999999999887 455554           7899999999999


Q ss_pred             HHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccc
Q psy5622         170 LEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGL  248 (269)
Q Consensus       170 ~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl  248 (269)
                      .||++|++ .+|+||+|+|+||+++|++.++++. ...|++.+.+++++|||.+++++.    .|++..  ..+|+++||
T Consensus       178 ~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~-~~~G~~~~~~~vigve~~~~~~~~----~g~~~~--~~~t~a~gl  250 (360)
T 2d1f_A          178 FEIVDVLGTAPDVHALPVGNAGNITAYWKGYTEY-HQLGLIDKLPRMLGTQAAGAAPLV----LGEPVS--HPETIATAI  250 (360)
T ss_dssp             HHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHH-HHTTSCSSCCEEEEEEEGGGCHHH----HSSCCS--SCCCSCGGG
T ss_pred             HHHHHHcCCCCCEEEEeCCchHHHHHHHHHHHHH-HhccccccCceEEEEecCCCCHHh----cCCccC--CccchHHHh
Confidence            99999997 6899999999999999999999987 445666667999999999998874    465443  246899999


Q ss_pred             cCCCCCH--HHHHHHhhhhccc
Q psy5622         249 AVPLVGW--NAFETAAPLIDKM  268 (269)
Q Consensus       249 ~~~~~~~--~~~~~~~~~~~~~  268 (269)
                      +++.+..  .+++.++++.|++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~  272 (360)
T 2d1f_A          251 RIGSPASWTSAVEAQQQSKGRF  272 (360)
T ss_dssp             CCSSCTTHHHHHHHHHHHTCEE
T ss_pred             CCCCCCcHHHHHHHHHHhCCeE
Confidence            8876543  2445566665543

>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*

Probab=100.00  E-value=2.6e-47  Score=349.23  Aligned_cols=197  Identities=18%  Similarity=0.224  Sum_probs=175.1

Q ss_pred             ceeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC----CccEEEeCCChHHHHHHHHHH
Q psy5622          14 GFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK----KKGVISASLGNHAQAMCYHGS   88 (269)
Q Consensus        14 ~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~----~~~vv~~SsGN~g~alA~~a~   88 (269)
                      .+...+|+|||++++ |++.+|++||+|+|++|||||||||+|.+++.++.+++.    ..+||++|+||||+|+|++|+
T Consensus        28 ~i~~lIG~TPLv~~~~Ls~~~G~~IylK~E~lnptGSfK~RgA~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa  107 (344)
T 3vc3_A           28 HVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAA  107 (344)
T ss_dssp             SGGGGSCCCCEEECCSTTTTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHH
T ss_pred             cHhhhcCCCceEECcccchhhCCEEEEEecCCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHH
Confidence            356678999999998 999999999999999999999999999999999876553    468999999999999999999


Q ss_pred             hcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHh-hhCCeeecCCCCCCccccCCCCcc-hhcc
Q psy5622          89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA--DMKEAKNIALKKGA-ELGLTYINGYLSSGLSVLGYDHPD-IMAG  164 (269)
Q Consensus        89 ~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~g~~n~~-~~~g  164 (269)
                      ++|++|+||||+++++.|+++++.|||+|+.++.  +..++...+.++.. +.+.+++++          |+||. .+.|
T Consensus       108 ~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~np~~~~a~  177 (344)
T 3vc3_A          108 MKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKGMGGTVKKAYELLENTPNAHMLQQ----------FSNPANTQVH  177 (344)
T ss_dssp             HHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHSTTEECCCT----------TTCHHHHHHH
T ss_pred             HcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCCCcchHHHHHHHHHHhhccCceeccc----------cccchhHHHH
Confidence            9999999999999999999999999999999974  33444444444444 446777888          89997 5688


Q ss_pred             chhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH
Q psy5622         165 QGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS  227 (269)
Q Consensus       165 ~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~  227 (269)
                      |+|++.||++|++ .+|+||+|+|+||+++|++.++|+.       .|.+++|+|||.+++++.
T Consensus       178 ~~t~g~EI~eq~~~~~d~vv~~vGgGG~~~Gi~~~~k~~-------~p~v~vigVep~~s~~l~  234 (344)
T 3vc3_A          178 FETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSK-------NPNVKIYGVEPSESNVLN  234 (344)
T ss_dssp             HHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHH-------CTTCEEEEEEEGGGCGGG
T ss_pred             HHHHHHHHHHHhCCCceEEEEecCCccchHHHhhhhHhh-------CCCceEEEEcCCCChhhc
Confidence            9999999999996 8999999999999999999999999       999999999999998774

>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*

Probab=100.00  E-value=4.6e-47  Score=343.68  Aligned_cols=216  Identities=19%  Similarity=0.176  Sum_probs=189.5

Q ss_pred             ceeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHHHh
Q psy5622          14 GFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSR   89 (269)
Q Consensus        14 ~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a~~   89 (269)
                      .+...+++|||++++ | + .|.+||+|+|++|||||||||++.+++.++.+.+.   ..+|+++|+||||+|+|++|++
T Consensus         6 ~i~~~~~~TPL~~l~~l-~-~g~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~   83 (316)
T 1y7l_A            6 DNSYSIGNTPLVRLKHF-G-HNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEIVDATSGNTGIALAYVAAA   83 (316)
T ss_dssp             SGGGGCCCCCEEECSSS-S-STTCEEEEETTSSGGGBTHHHHHHHHHHHHHHTTSSCTTCEEEESCCSHHHHHHHHHHHH
T ss_pred             hhHHhcCCCCcEECccC-C-CCCEEEEEeccCCCCCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence            355677899999998 8 6 88899999999999999999999999998865443   2689999999999999999999


Q ss_pred             cCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHhhhC-C-eeecCCCCCCccccCCCCcchh-cc
Q psy5622          90 LNIPVTVVMPIVAPIMKIQACRRYGATVIVEGAD--MKEAKNIALKKGAELG-L-TYINGYLSSGLSVLGYDHPDIM-AG  164 (269)
Q Consensus        90 ~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~-~-~~~~~~~~~~~~~~g~~n~~~~-~g  164 (269)
                      +|++|+||||+++++.|+++++.+||+|+.++++  ++++.+.+++++++.+ . +++++          |+||.++ .|
T Consensus        84 ~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~n~~~~~~g  153 (316)
T 1y7l_A           84 RGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQ----------FENPANPQIH  153 (316)
T ss_dssp             HTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTTEECCCT----------TTCTHHHHHH
T ss_pred             cCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEECCC----------CCCHHHHHHH
Confidence            9999999999999999999999999999999864  8999999999998875 5 66787          8999865 47


Q ss_pred             chhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCC-CCcEEEEEcCCCChHHHHHHHcCCCCCCCCcc
Q psy5622         165 QGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVG-LEIVDQGVESDRCASFSTAIKHGKPTPVSVQP  242 (269)
Q Consensus       165 ~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~-~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~  242 (269)
                      |.|+++||++|++ .+|+||+|+|+||+++|++.++|++       + |.+++|+|||++++.+.. ++.|++...  .+
T Consensus       154 ~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~-------~~~~~~vi~ve~~~~~~~~~-~~~g~~~~~--~~  223 (316)
T 1y7l_A          154 RETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIKLD-------FGKQITSVAVEPVESPVISQ-TLAGEEVKP--GP  223 (316)
T ss_dssp             HHTHHHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHT-------SCCCCEEEEEEETTSCHHHH-HHHTCCCCC--CC
T ss_pred             HHHHHHHHHHHcCCCCCEEEEeCCccccHHHHHHHHHHh-------CCCCCEEEEEecCCCccccc-cccCCccCC--CC
Confidence            9999999999998 5999999999999999999999998       7 999999999999988876 777775532  23


Q ss_pred             cccccccCC
Q psy5622         243 TLADGLAVP  251 (269)
Q Consensus       243 t~a~gl~~~  251 (269)
                      +.++|+..+
T Consensus       224 ~~~~gi~~~  232 (316)
T 1y7l_A          224 HKIQGIGAG  232 (316)
T ss_dssp             CSCTTSCCS
T ss_pred             cccCcCCCC
Confidence            445666543

>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*

Probab=100.00  E-value=2e-46  Score=342.11  Aligned_cols=196  Identities=24%  Similarity=0.241  Sum_probs=179.4

Q ss_pred             ceeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---Ccc-EEEeCCChHHHHHHHHHH
Q psy5622          14 GFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKG-VISASLGNHAQAMCYHGS   88 (269)
Q Consensus        14 ~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~-vv~~SsGN~g~alA~~a~   88 (269)
                      .+...+++|||++++ | +..|.+||+|+|++|||||||||++.+++.++.+++.   .++ |+++|+||||+|+|++|+
T Consensus        14 ~i~~~ig~TPL~~l~~l-~~~g~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~   92 (334)
T 3tbh_A           14 SIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGA   92 (334)
T ss_dssp             SGGGGSSCCCEEECCTT-CCSSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHH
T ss_pred             HHHHhcCCCCeEECCcc-cCCCCEEEEEeCCCCCccCcHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence            456678899999998 8 7888999999999999999999999999998865443   256 599999999999999999


Q ss_pred             hcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHhhh-CCeeecCCCCCCccccCCCCcc-hhcc
Q psy5622          89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA--DMKEAKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHPD-IMAG  164 (269)
Q Consensus        89 ~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~~-~~~g  164 (269)
                      ++|++|+||||++++..|+++++.|||+|+.++.  +++++.+.+++++++. +++|+++          |+||. ...|
T Consensus        93 ~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~i~~----------~~np~n~~~g  162 (334)
T 3tbh_A           93 IRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALGMKGAVAMAKKIVAANPNAVLADQ----------FATKYNALIH  162 (334)
T ss_dssp             HHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEEECCT----------TTCHHHHHHH
T ss_pred             HhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCchHHHHHHHHHHHhCCCEEECCc----------cCChhHHHHH
Confidence            9999999999999999999999999999999985  4889999999999887 7888998          89998 5679


Q ss_pred             chhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH
Q psy5622         165 QGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS  227 (269)
Q Consensus       165 ~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~  227 (269)
                      |.++++||++|++ .+|+||+|+|+||+++|++.++|+.       .|.+++++|||++++++.
T Consensus       163 ~~t~~~Ei~~q~~~~~d~vv~pvG~GG~~aGi~~~~k~~-------~p~~~vigVe~~~~~~~~  219 (334)
T 3tbh_A          163 EETTGPEIWEQTNHNVDCFIAGVGTGGTLTGVARALKKM-------GSHARIVAVEPTESPVLS  219 (334)
T ss_dssp             HHTHHHHHHHHTTSCCSEEEEECSSSHHHHHHHHHHHHT-------TCCCEEEEEEETTSCTTT
T ss_pred             HHHHHHHHHHHhCCCCCEEEeccCCcHhHHHHHHHHHHh-------CCCCEEEEEeeCCchHhh
Confidence            9999999999996 7999999999999999999999998       899999999999998874

>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*

Probab=100.00  E-value=1.8e-46  Score=357.60  Aligned_cols=239  Identities=20%  Similarity=0.182  Sum_probs=198.5

Q ss_pred             eeccccCCcccccc-cccc-CCC-eEEEEeCCCCCCCchhhHHHHHHHHhchH---hc-CCccEEEeCCChHHHHHHHHH
Q psy5622          15 FVIRDQWFNSKKSH-LSEL-TKM-EIFLKKDFFQVTGSFKERGACYALLMLSE---DQ-KKKGVISASLGNHAQAMCYHG   87 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~~~-~g~-~i~~K~E~~nptGS~K~R~a~~~l~~~~~---~~-~~~~vv~~SsGN~g~alA~~a   87 (269)
                      +.+++|+|||++++ |++. +|. +||+|+|++|||||||||++.+++..+.+   ++ +..+|+++|+||||+|+|++|
T Consensus       124 v~l~~g~TPLv~l~~L~~~~lg~~~l~~K~E~~nPTGSFKDRga~~~~~~l~~~~~~~~g~~~Vv~aSsGNtG~AlA~~a  203 (486)
T 1e5x_A          124 VSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYC  203 (486)
T ss_dssp             CCCCCCCCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHHHHHHHHHHHHTTCCCCEEEECCCSHHHHHHHHHH
T ss_pred             ccccCCCCCcEECcccchhhcCCCcEEEeeccCCCccCHHHHHHHHHHHHHHHHHHcCCCCeEEEEcCCCHHHHHHHHHH
Confidence            45678999999998 8887 775 89999999999999999999888876542   23 367899999999999999999


Q ss_pred             HhcCCCeEEEEcCC-CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccch
Q psy5622          88 SRLNIPVTVVMPIV-APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQG  166 (269)
Q Consensus        88 ~~~G~~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~  166 (269)
                      +++|++|+||+|++ +++.|+.+++.+||+|+.++++++++.+.+++++++.+++++++          + ||.+++||.
T Consensus       204 ~~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~vi~v~g~~dd~~~~a~~l~~~~~~~~vns----------~-N~~~i~gq~  272 (486)
T 1e5x_A          204 ASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMKLIREITAELPIYLANS----------L-NSLRLEGQK  272 (486)
T ss_dssp             HHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSCEEEGGG----------S-HHHHHHHHT
T ss_pred             HHcCCeEEEEECCCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCEEEeCC----------C-CHHHHHHHH
Confidence            99999999999997 99999999999999999999999999999999998888777776          5 999999999


Q ss_pred             hHHHHHHhhcC--CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCC--CCCCCCcc
Q psy5622         167 TVGLEIVDQVA--NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGK--PTPVSVQP  242 (269)
Q Consensus       167 t~~~EI~~ql~--~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~--~~~~~~~~  242 (269)
                      ++++||++|++  .+|+||+|+|+||+++|++.+|+++ ...|++.|.+++++|||++++++.++++.|+  ..+.+..+
T Consensus       273 t~~~Ei~~ql~~~~~D~vvvpvG~GG~i~Gi~~a~k~~-~~~Gli~p~~rvi~Ve~~~~~~l~~~~~~G~~~~~~~~~~~  351 (486)
T 1e5x_A          273 TAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKXC-QELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTAST  351 (486)
T ss_dssp             HHHHHHHHHTTSCCCSEEEEECSSTHHHHHHHHHHHHH-HHTTSSSCCCEEEEEEETTSSTHHHHHHTTTTTCCC-----
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHHh-hhhccCCCCCEEEEEecCCCchHHHHHHcCCCccccCCCCC
Confidence            99999999997  5999999999999999999999987 6678777899999999999999999999995  34444567


Q ss_pred             cccccccCCCCCHHHHHHHhhhhcc
Q psy5622         243 TLADGLAVPLVGWNAFETAAPLIDK  267 (269)
Q Consensus       243 t~a~gl~~~~~~~~~~~~~~~~~~~  267 (269)
                      |+++||+++.|.+  |+.+.+++|+
T Consensus       352 t~a~gi~i~~p~~--~~~~~~~~~~  374 (486)
T 1e5x_A          352 TFASAIQIGDPVS--IDRAVYALKK  374 (486)
T ss_dssp             -----------CC--CHHHHHHHHH
T ss_pred             eeCccccCCCCcc--HHHHHHHHhc
Confidence            9999998887654  6666666654

>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*

Probab=100.00  E-value=3.7e-46  Score=338.67  Aligned_cols=197  Identities=17%  Similarity=0.148  Sum_probs=180.3

Q ss_pred             ceeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCC----ccEEEeCCChHHHHHHHHHH
Q psy5622          14 GFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKK----KGVISASLGNHAQAMCYHGS   88 (269)
Q Consensus        14 ~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~----~~vv~~SsGN~g~alA~~a~   88 (269)
                      .+...+++|||++++ |++..|.+||+|+|++|||||||||++.+++.++.+.+..    .+|+++|+||||+|+|++|+
T Consensus         8 ~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~G~~~~~~~~vv~assGN~g~alA~aa~   87 (322)
T 1z7w_A            8 DVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAA   87 (322)
T ss_dssp             SGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHH
T ss_pred             HHHHhcCCCCeEECccccccCCceEEEEecccCCCCchHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCCHHHHHHHHHHH
Confidence            356678899999998 9888888999999999999999999999999988654431    68999999999999999999


Q ss_pred             hcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHhhh-CCeeecCCCCCCccccCCCCcchh-cc
Q psy5622          89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA--DMKEAKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHPDIM-AG  164 (269)
Q Consensus        89 ~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~~~~-~g  164 (269)
                      ++|++|+||||+++++.|+++++.|||+|+.+++  +++++.+.+++++++. +++|+++          |+||.++ .|
T Consensus        88 ~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~i~~----------~~n~~~~~~g  157 (322)
T 1z7w_A           88 AKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQ----------FENPANPKIH  157 (322)
T ss_dssp             HHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEEECCT----------TTCTHHHHHH
T ss_pred             HcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHhCCCeEeCCC----------CCChhHHHHH
Confidence            9999999999999999999999999999999985  4789999999999987 7788888          8999864 69


Q ss_pred             chhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH
Q psy5622         165 QGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS  227 (269)
Q Consensus       165 ~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~  227 (269)
                      |.|+++||++|++ .+|+||+|+|+||+++|++.++|+.       .|.+++++|||++++++.
T Consensus       158 ~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~-------~p~~~vigve~~~~~~~~  214 (322)
T 1z7w_A          158 YETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQ-------NANVKLYGVEPVESAILS  214 (322)
T ss_dssp             HHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHH-------CTTCEEEEEEEGGGCGGG
T ss_pred             HHHHHHHHHHHhcCCCCEEEEecCccHhHHHHHHHHHHc-------CCCCEEEEEecCCCcccc
Confidence            9999999999996 8999999999999999999999999       899999999999998764

>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*

Probab=100.00  E-value=5.4e-46  Score=338.15  Aligned_cols=195  Identities=17%  Similarity=0.160  Sum_probs=180.4

Q ss_pred             eeccccCCcccccc-cccc-------CCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHH
Q psy5622          15 FVIRDQWFNSKKSH-LSEL-------TKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAM   83 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~~~-------~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~al   83 (269)
                      +...+++|||++++ |++.       .|.+||+|+|++|||||||||++.+++.++.+.+.   .++||++|+||||+|+
T Consensus         9 i~~~ig~TPL~~~~~l~~~~~~~~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~l~~~~~vv~aSsGN~g~al   88 (325)
T 3dwg_A            9 LLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATILEPTSGNTGISL   88 (325)
T ss_dssp             TGGGCSCCCEEECTTTSSBSSCBTTBCCEEEEEEETTSSTTSBTTHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHH
T ss_pred             HHHhcCCCCcEEccccchhhcccccCCCcEEEEEECCCCCCCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHH
Confidence            34456899999998 8887       77899999999999999999999999999865443   3789999999999999


Q ss_pred             HHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHhhhC-CeeecCCCCCCccccCCCCcc
Q psy5622          84 CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA--DMKEAKNIALKKGAELG-LTYINGYLSSGLSVLGYDHPD  160 (269)
Q Consensus        84 A~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~g~~n~~  160 (269)
                      |++|+++|++|+||||+++++.|+++++.|||+|+.++.  +++++.+.+++++++.+ ++|+++          |+||.
T Consensus        89 A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~----------~~np~  158 (325)
T 3dwg_A           89 AMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQ----------YGNPA  158 (325)
T ss_dssp             HHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECSTTTHHHHHHHHHHHHHHCTTSBCCCT----------TTCHH
T ss_pred             HHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeCCC----------CCCHH
Confidence            999999999999999999999999999999999999985  68999999999999886 888998          89999


Q ss_pred             hh-ccchhHHHHHHhhcCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622         161 IM-AGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF  226 (269)
Q Consensus       161 ~~-~g~~t~~~EI~~ql~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~  226 (269)
                      ++ .||.++++||++|++.+|+||+|+|+||+++|++.++|+.       .|.++||+|||++++++
T Consensus       159 ~~~~g~~t~~~Ei~~q~~~~d~vv~pvG~GG~~aGi~~~~k~~-------~p~~~vigVe~~~~~~~  218 (325)
T 3dwg_A          159 NTDSHYCGTGPELLADLPEITHFVAGLGTTGTLMGTGRFLREH-------VANVKIVAAEPRYGEGV  218 (325)
T ss_dssp             HHHHHHHTHHHHHHHHCTTCCEEEEECSSSHHHHHHHHHHHHH-------STTCEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHHHhcCCCCEEEEecCchHHHHHHHHHHHHh-------CCCCEEEEEeeCCCcch
Confidence            87 6999999999999988999999999999999999999999       89999999999999877

>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}

Probab=100.00  E-value=2.2e-46  Score=350.86  Aligned_cols=198  Identities=17%  Similarity=0.164  Sum_probs=182.1

Q ss_pred             cceeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC----CccEEEeCCChHHHHHHHHH
Q psy5622          13 LGFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK----KKGVISASLGNHAQAMCYHG   87 (269)
Q Consensus        13 ~~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~----~~~vv~~SsGN~g~alA~~a   87 (269)
                      ..+...+++|||++++ |++.+|.+||+|+|++|||||||||++.+++.++.+.+.    ..+||++|+||||+|+|++|
T Consensus       115 ~~i~~~ig~TPLv~l~~Ls~~~g~~I~lK~E~lnptGSfKdRgA~~~i~~A~~~G~l~~g~~~VV~aSsGNhG~AlA~aA  194 (430)
T 4aec_A          115 DNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIA  194 (430)
T ss_dssp             SSGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHH
T ss_pred             hhhhccCCCCCeEEChhhhhhcCCeEEEEECCCCCCCCHHHHHHHHHHHHHHHcCCCCCCCcEEEEECCCHHHHHHHHHH
Confidence            3467889999999998 998889999999999999999999999999998864442    26799999999999999999


Q ss_pred             HhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC--CCHHHHHHHHHHHHhhh-CCeeecCCCCCCccccCCCCcch-hc
Q psy5622          88 SRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG--ADMKEAKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHPDI-MA  163 (269)
Q Consensus        88 ~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~--~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~~~-~~  163 (269)
                      +++|++|+||||++++..|+++++.|||+|+.++  .+++++.+.+++++++. +++|+++          |+||.+ ++
T Consensus       195 a~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~~~~~~~a~~~a~el~~~~~~~~~i~~----------~~np~~~~a  264 (430)
T 4aec_A          195 ASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQ----------FDNPANPKI  264 (430)
T ss_dssp             HHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHSTTEEECCT----------TTCTHHHHH
T ss_pred             HHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECCCCChHHHHHHHHHHHHhcCCcEEecC----------CCCccHHHH
Confidence            9999999999999999999999999999999997  46889999999999886 6788888          899997 79


Q ss_pred             cchhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH
Q psy5622         164 GQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS  227 (269)
Q Consensus       164 g~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~  227 (269)
                      ||.+++.||++|++ .+|+||+|+|+||+++|++.++|+.       .|.++||||||++++++.
T Consensus       265 G~~T~a~EI~eQl~~~~D~vVvpvG~GGtlaGi~~~lk~~-------~p~~kVigVep~~s~~l~  322 (430)
T 4aec_A          265 HYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEK-------NPKTQVIGVEPTESDILS  322 (430)
T ss_dssp             HHHTHHHHHHHHTTSCEEEEEEECSSSHHHHHHHHHHHHH-------CTTSEEEEEEEGGGCGGG
T ss_pred             HHHHHHHHHHHHcCCCCCEEEEeCCccHHHHHHHHHHHHh-------CCCCEEEEEEeCCCcHhh
Confidence            99999999999996 7999999999999999999999999       899999999999998763

>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A

Probab=100.00  E-value=9.9e-46  Score=334.52  Aligned_cols=197  Identities=19%  Similarity=0.168  Sum_probs=179.9

Q ss_pred             ceeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHHHh
Q psy5622          14 GFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSR   89 (269)
Q Consensus        14 ~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a~~   89 (269)
                      .+...+++|||++++ |++..|.+||+|+|++|||||||||++.+++.++.+++.   ..+|+++|+||||+|+|++|++
T Consensus         9 ~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfK~R~a~~~l~~a~~~g~~~~g~~vv~assGN~g~alA~~a~~   88 (313)
T 2q3b_A            9 DITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPDTIILEPTSGNTGIALAMVCAA   88 (313)
T ss_dssp             SGGGGSCCCCEEECSSSCTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHHHHH
T ss_pred             hHHHhcCCCceEECcccccccCcEEEEEehhcCCCCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHHH
Confidence            355678899999998 988889999999999999999999999999998865433   2689999999999999999999


Q ss_pred             cCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHhhhCC-eeecCCCCCCccccCCCCcchh-ccc
Q psy5622          90 LNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA--DMKEAKNIALKKGAELGL-TYINGYLSSGLSVLGYDHPDIM-AGQ  165 (269)
Q Consensus        90 ~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~g~~n~~~~-~g~  165 (269)
                      +|++|+||||+++++.|+++++.+||+|+.++.  +++++.+.+++++++.++ +++++          |+||.++ .||
T Consensus        89 ~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~----------~~n~~~~~~~~  158 (313)
T 2q3b_A           89 RGYRCVLTMPETMSLERRMLLRAYGAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQ----------FENPANPAIHR  158 (313)
T ss_dssp             HTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEECCCT----------TTCTHHHHHHH
T ss_pred             cCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHHHHhCCCEEeCCC----------CCChhhHHHHH
Confidence            999999999999999999999999999999985  578999999999999887 66777          8999987 459


Q ss_pred             hhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH
Q psy5622         166 GTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS  227 (269)
Q Consensus       166 ~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~  227 (269)
                      .|+++||++|++ ++|+||+|+|+||+++|++.++|+.       .|.+++|+|||++++++.
T Consensus       159 ~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~-------~~~~~vi~ve~~~~~~~~  214 (313)
T 2q3b_A          159 VTTAEEVWRDTDGKVDIVVAGVGTGGTITGVAQVIKER-------KPSARFVAVEPAASPVLS  214 (313)
T ss_dssp             HTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHH-------CTTCEEEEEEETTSCTTT
T ss_pred             HHHHHHHHHHcCCCCCEEEEccCcchhHHHHHHHHHHh-------CCCCEEEEEeeCCCcccc
Confidence            999999999996 7999999999999999999999999       899999999999998774

>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*

Probab=100.00  E-value=1.8e-45  Score=331.49  Aligned_cols=195  Identities=21%  Similarity=0.255  Sum_probs=179.9

Q ss_pred             eccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---Cc--cEEEeCCChHHHHHHHHHHh
Q psy5622          16 VIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KK--GVISASLGNHAQAMCYHGSR   89 (269)
Q Consensus        16 ~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~--~vv~~SsGN~g~alA~~a~~   89 (269)
                      ...+++|||++++ |++.+|.+||+|+|++|||||||||++.+++.++.+++.   .+  +|+++|+||||+|+|++|++
T Consensus         4 ~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~~~~g~~~~vv~assGN~g~a~A~~a~~   83 (304)
T 1ve1_A            4 EGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAAS   83 (304)
T ss_dssp             GGGCCCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHHHH
T ss_pred             HHhcCCCCcEECcccccccCCEEEEEecccCCCCcHHHHHHHHHHHHHHHcCCCCCCCccEEEEeCCcHHHHHHHHHHHH
Confidence            3457899999998 998889999999999999999999999999998865443   15  89999999999999999999


Q ss_pred             cCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhcc-ch
Q psy5622          90 LNIPVTVVMPIVAPIMKIQACRRYGATVIVEGAD--MKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAG-QG  166 (269)
Q Consensus        90 ~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g-~~  166 (269)
                      +|++|+||||+++++.|+++++.+||+|+.++.+  ++++.+.+++++++.+++|+++          |+||.++.| |.
T Consensus        84 ~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~----------~~n~~~~~g~~~  153 (304)
T 1ve1_A           84 RGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREEALRLKEELGAFMPDQ----------FKNPANVRAHYE  153 (304)
T ss_dssp             HTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHHTCBCCCT----------TTCHHHHHHHHH
T ss_pred             cCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHhcCCCEeCCC----------CCChhHHHHHHH
Confidence            9999999999999999999999999999999876  8999999999998888888888          899999888 69


Q ss_pred             hHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH
Q psy5622         167 TVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS  227 (269)
Q Consensus       167 t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~  227 (269)
                      |+++||++|++ .+|+||+|+|+||+++|++.++|++       .|.+++|+|||++++.+.
T Consensus       154 t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~-------~~~~~vi~ve~~~~~~~~  208 (304)
T 1ve1_A          154 TTGPELYEALEGRIDAFVYGSGTGGTITGVGRYLKER-------IPHVKVIAVEPARSNVLS  208 (304)
T ss_dssp             THHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHTT-------CTTCEEEEEEEGGGCTTT
T ss_pred             HHHHHHHHHcCCCCCEEEEecCCchhHHHHHHHHHHh-------CCCCEEEEEecCCCcccc
Confidence            99999999998 6999999999999999999999998       899999999999997663

>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*

Probab=100.00  E-value=2.6e-45  Score=330.54  Aligned_cols=231  Identities=23%  Similarity=0.255  Sum_probs=192.5

Q ss_pred             eeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHHHhc
Q psy5622          15 FVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSRL   90 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a~~~   90 (269)
                      +...+++|||++++ |++..|.+||+|+|++|||||||||++.+++.++.+++.   ..+|+++|+||||+|+|++|+++
T Consensus         4 i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~~~~g~~vv~~ssGN~g~a~A~~a~~~   83 (303)
T 2v03_A            4 LEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALK   83 (303)
T ss_dssp             GGGGSSCCCEEECSSSSCSSSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHHHHHH
T ss_pred             hHhhcCCCCcEECcccccccCCEEEEEeccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHc
Confidence            44567899999998 998889999999999999999999999999998865443   26899999999999999999999


Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHhh-hCCeeecCCCCCCccccCCCCcchh-ccch
Q psy5622          91 NIPVTVVMPIVAPIMKIQACRRYGATVIVEGA--DMKEAKNIALKKGAE-LGLTYINGYLSSGLSVLGYDHPDIM-AGQG  166 (269)
Q Consensus        91 G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~g~~n~~~~-~g~~  166 (269)
                      |++|+||||+++++.|+++++.+||+|+.++.  +++++.+.+++++++ .++ |+++          |+||.++ .||.
T Consensus        84 G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~----------~~n~~~~~~g~~  152 (303)
T 2v03_A           84 GYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGK-LLDQ----------FNNPDNPYAHYT  152 (303)
T ss_dssp             TCEEEEEEETTSCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHTTSCE-ECCT----------TTCTHHHHHHHH
T ss_pred             CCcEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCc-ccCC----------cCChhhHHHhcC
Confidence            99999999999999999999999999999985  689999999999988 466 8888          8999976 4899


Q ss_pred             hHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCC---CCCCCcc
Q psy5622         167 TVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKP---TPVSVQP  242 (269)
Q Consensus       167 t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~---~~~~~~~  242 (269)
                      +++.||++|++ .+|+||+|+|+||+++|++.++|+.       .|.+++|+|||++++++.. + .|-.   .+.....
T Consensus       153 t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~-------~p~~~vigve~~~~~~~~~-~-~gl~~~~~~~~~~~  223 (303)
T 2v03_A          153 TTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQ-------SKPVTIVGLQPEEGSSIPG-I-RRWPTEYLPGIFNA  223 (303)
T ss_dssp             THHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTS-------SSCCEEEEEEECTTCCCTT-C-CCCCGGGCCTTCCG
T ss_pred             CcHHHHHHHhCCCCCEEEEEeCccHhHHHHHHHHHHh-------CCCCEEEEEcCCCCccccc-C-CcCCCCCCCcccch
Confidence            99999999998 5999999999999999999999998       8999999999999987753 1 1110   1111122


Q ss_pred             cccccccCCCCCHHHHHHHhhhhc
Q psy5622         243 TLADGLAVPLVGWNAFETAAPLID  266 (269)
Q Consensus       243 t~a~gl~~~~~~~~~~~~~~~~~~  266 (269)
                      ...+.. +...+.++++.++++.+
T Consensus       224 ~~~d~~-~~V~d~e~~~a~~~l~~  246 (303)
T 2v03_A          224 SLVDEV-LDIHQRDAENTMRELAV  246 (303)
T ss_dssp             GGCSEE-EEECHHHHHHHHHHHHH
T ss_pred             HHCCEE-EEECHHHHHHHHHHHHH
Confidence            233332 23445667777776654

>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}

Probab=100.00  E-value=3.3e-45  Score=330.39  Aligned_cols=196  Identities=21%  Similarity=0.233  Sum_probs=165.5

Q ss_pred             eeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHHHhc
Q psy5622          15 FVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSRL   90 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a~~~   90 (269)
                      +...+++|||++++ |++.+|.+||+|+|++|||||||||++.+++.++.+++.   ..+|+++|+||||+|+|++|+++
T Consensus         8 i~~~~~~TPL~~l~~l~~~~g~~i~~K~E~~~ptgSfK~R~a~~~l~~a~~~g~~~~g~~vv~assGN~g~a~A~~a~~~   87 (308)
T 2egu_A            8 ITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDTIVEPTSGNTGIGLAMVAAAK   87 (308)
T ss_dssp             GGGGSSCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTTCEEEEECCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCeEECCcccccCCCEEEEEecccCCCCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHHHc
Confidence            45677899999998 988889999999999999999999999999998865443   26899999999999999999999


Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchh-ccchh
Q psy5622          91 NIPVTVVMPIVAPIMKIQACRRYGATVIVEGA--DMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIM-AGQGT  167 (269)
Q Consensus        91 G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~-~g~~t  167 (269)
                      |++|+||||+++++.|+++++.+||+|+.++.  +++++.+.+++++++.+++++++          |+||.++ .||.|
T Consensus        88 G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~----------~~n~~~~~~g~~t  157 (308)
T 2egu_A           88 GYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGMRGAIAKAEELVREHGYFMPQQ----------FKNEANPEIHRLT  157 (308)
T ss_dssp             TCEEEEEEESCSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHHCCBCC------------------------C
T ss_pred             CCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHHCcCCcCCc----------CCChhHHHHHHHH
Confidence            99999999999999999999999999999985  47899999999999988877777          8999864 89999


Q ss_pred             HHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH
Q psy5622         168 VGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS  227 (269)
Q Consensus       168 ~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~  227 (269)
                      +++||++|++ .+|+||+|+|+||+++|++.++|++       .|.+++|+|||++++.+.
T Consensus       158 ~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~-------~~~~~vigve~~~~~~~~  211 (308)
T 2egu_A          158 TGKEIVEQMGDQLDAFVAGVGTGGTITGAGKVLREA-------YPNIKIYAVEPADSPVLS  211 (308)
T ss_dssp             HHHHHHHHHTTCCCEEEEEGGGTHHHHHHHHHHHHH-------CTTCEEEEEEECC-----
T ss_pred             HHHHHHHHcCCCCCEEEEeeCCchhHHHHHHHHHHh-------CCCCEEEEEEeCCCcccc
Confidence            9999999998 6999999999999999999999999       899999999999997764

>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*

Probab=100.00  E-value=2.7e-45  Score=335.79  Aligned_cols=196  Identities=22%  Similarity=0.276  Sum_probs=178.4

Q ss_pred             ceeccccCCcccccc-ccc----cCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHH
Q psy5622          14 GFVIRDQWFNSKKSH-LSE----LTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCY   85 (269)
Q Consensus        14 ~~~~~~~~TPl~~~~-l~~----~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~   85 (269)
                      .+...+++|||++++ |++    .+|.+||+|+|++|||||||||++.+++.++.+.+.   ..+|+++|+||||+|+|+
T Consensus        16 ~i~~~~g~TPL~~~~~l~~~~~~~~g~~v~~K~E~~~ptGSfKdR~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~   95 (343)
T 2pqm_A           16 NILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKDGRLKPGMEIIESTSGNTGIALCQ   95 (343)
T ss_dssp             SGGGGSSCCCEEECCGGGCSTTSCTTCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTSSCTTCEEEEECSSHHHHHHHH
T ss_pred             HHHhhcCCCCeEECCccccccccccCcEEEEEeccCCCCCChHHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHH
Confidence            466788999999998 987    788999999999999999999999999998865443   268999999999999999


Q ss_pred             HHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHhhhCC--eeecCCCCCCccccCCCCcch
Q psy5622          86 HGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA--DMKEAKNIALKKGAELGL--TYINGYLSSGLSVLGYDHPDI  161 (269)
Q Consensus        86 ~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~g~~n~~~  161 (269)
                      +|+++|++|+||||+++++.|+++++.+||+|+.+++  +++++.+.+++++++.+.  +++++          |+||.+
T Consensus        96 aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~~~----------~~n~~n  165 (343)
T 2pqm_A           96 AGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQ----------FGNPDN  165 (343)
T ss_dssp             HHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHSTTTEEECCT----------TTCHHH
T ss_pred             HHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEECCC----------CCChhH
Confidence            9999999999999999999999999999999999986  588999999999998775  55677          899986


Q ss_pred             h-ccchhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH
Q psy5622         162 M-AGQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS  227 (269)
Q Consensus       162 ~-~g~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~  227 (269)
                      + .||.+++ ||++|++ .+|+||+|+|+||+++|++.++|++       .|.+++|+|||++++.+.
T Consensus       166 ~~~g~~t~~-Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~-------~p~~~vigVe~~~~~~~~  225 (343)
T 2pqm_A          166 TAAHHYTAN-EIWEDTDGEVDIVVSAVGTSGTVIGVAEKLKEK-------KKGIKIIAVEPEESAVLE  225 (343)
T ss_dssp             HHHHHHHHH-HHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHH-------CTTCEEEEEEEGGGCTTT
T ss_pred             HHHHHHHHH-HHHHHcCCCCCEEEEecCCchhHHHHHHHHHHc-------CCCCEEEEEecCCCcccc
Confidence            4 8899999 9999998 6999999999999999999999999       899999999999997664

>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*

Probab=100.00  E-value=2.2e-45  Score=336.28  Aligned_cols=201  Identities=17%  Similarity=0.138  Sum_probs=176.4

Q ss_pred             cceeccccCCcccccc-ccccCCCeEEEEeCCCCC--CCchhhHHHHHHHHhchHhcCCccEEEeC--CChHHHHHHHHH
Q psy5622          13 LGFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQV--TGSFKERGACYALLMLSEDQKKKGVISAS--LGNHAQAMCYHG   87 (269)
Q Consensus        13 ~~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~np--tGS~K~R~a~~~l~~~~~~~~~~~vv~~S--sGN~g~alA~~a   87 (269)
                      ..+.+.+++|||++++ |++.+|++||+|+|++||  +||||||++.+++.++. +.+.++||++|  +||||+|+|++|
T Consensus        24 ~ri~~~~~~TPL~~~~~l~~~~g~~v~~K~E~l~p~~~gs~K~R~~~~~l~~a~-~~G~~~vv~~s~tsGN~g~alA~aa  102 (342)
T 4d9b_A           24 PRLEFIGAPTPLEYLPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADAL-REGADTLITAGAIQSNHVRQTAAVA  102 (342)
T ss_dssp             CCCCSSCSCCCEEECHHHHHHHTSCEEEEEGGGCSSTTCCTHHHHHHHHHHHHH-HTTCCEEEEEEETTCHHHHHHHHHH
T ss_pred             CcccccCCCCceeEhhhhHHhhCCEEEEEeCCCCCCCCcchHHHhHHHHHHHHH-HcCCCEEEEcCCcccHHHHHHHHHH
Confidence            3467888999999998 988889999999999999  99999999999999875 55568899985  799999999999


Q ss_pred             HhcCCCeEEEEcCCCcH--------HHHHHHHHcCCEEEEeCC--CHHHHH-HHHHHHHhhhCCeeecCCCCCCccccCC
Q psy5622          88 SRLNIPVTVVMPIVAPI--------MKIQACRRYGATVIVEGA--DMKEAK-NIALKKGAELGLTYINGYLSSGLSVLGY  156 (269)
Q Consensus        88 ~~~G~~~~ivvp~~~~~--------~~~~~l~~~Ga~v~~~~~--~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~g~  156 (269)
                      +++|++|+||||+++++        .|++.++.|||+|+.++.  +.+++. +.+++++++.+..|+.+        .++
T Consensus       103 ~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~p--------~~~  174 (342)
T 4d9b_A          103 AKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALTDPDAQLQTLATRIEAQGFRPYVIP--------VGG  174 (342)
T ss_dssp             HHHTCEEEEEEECTTCCCCHHHHHSHHHHHHHHTTCEEEECSCCSSHHHHHHHHHHHHHHTTCCEEECC--------GGG
T ss_pred             HHhCCcEEEEEeCCCCCccccccccchHHHHHHCCCEEEEECchhhHHHHHHHHHHHHHhcCCceEEeC--------CCC
Confidence            99999999999998773        589999999999999985  445555 46677777777667655        226


Q ss_pred             CCcchhccchhHHHHHHhhcC---CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHH
Q psy5622         157 DHPDIMAGQGTVGLEIVDQVA---NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTA  229 (269)
Q Consensus       157 ~n~~~~~g~~t~~~EI~~ql~---~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~  229 (269)
                      .||..++||.|++.||++|++   .+|+||+|+|+||+++|++.++|++       +|.++||+|||.+++++..+
T Consensus       175 ~n~~~~~G~~t~~~EI~~q~~~~~~~d~vv~~vGtGGt~aGi~~~~k~~-------~~~~~vigVe~~~~~~~~~~  243 (342)
T 4d9b_A          175 SSALGAMGYVESALEIAQQCEEVVGLSSVVVASGSAGTHAGLAVGLEHL-------MPDVELIGVTVSRSVAEQKP  243 (342)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHTTTCCCCEEEEEESSSHHHHHHHHHHHHH-------CTTSEEEEEESSSCHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCHHHHHHHHHHHhh-------CCCCeEEEEEecCcHHHHHH
Confidence            788889999999999999997   7999999999999999999999999       89999999999999988654

>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*

Probab=100.00  E-value=1.6e-44  Score=325.28  Aligned_cols=192  Identities=26%  Similarity=0.322  Sum_probs=175.3

Q ss_pred             eeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC-CccEEEeCCChHHHHHHHHHHhcCC
Q psy5622          15 FVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK-KKGVISASLGNHAQAMCYHGSRLNI   92 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~-~~~vv~~SsGN~g~alA~~a~~~G~   92 (269)
                      ....+++|||++++ |+    .+||+|+|++|||||||||++.+++.++.+++. ..+|+++|+||||+|+|++|+++|+
T Consensus        14 ~~~~~~~TPL~~l~~l~----~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~~~~~vv~aSsGN~g~a~A~aa~~~G~   89 (303)
T 1o58_A           14 MERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNGIVEPTSGNMGIAIAMIGAKRGH   89 (303)
T ss_dssp             HHHHSCCCCEEECTTTC----TTEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCTTCEEEECSSHHHHHHHHHHHHHTC
T ss_pred             hhhccCCCCeEECccCC----ceEEEEecCCCCCCChHHHHHHHHHHHHHHcCCCCCCEEEECchHHHHHHHHHHHHcCC
Confidence            44567899999987 65    689999999999999999999999998865443 3569999999999999999999999


Q ss_pred             CeEEEEcCCCcHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchh-ccchhHH
Q psy5622          93 PVTVVMPIVAPIMKIQACRRYGATVIVEGAD--MKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIM-AGQGTVG  169 (269)
Q Consensus        93 ~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~-~g~~t~~  169 (269)
                      +|+||||+++++.|+++++.+||+|+.++++  ++++.+.+++++++.+++|+++          |+||.++ .||.+++
T Consensus        90 ~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~n~~~~~~g~~t~~  159 (303)
T 1o58_A           90 RVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEISRETGAHMLNQ----------FENPYNVYSHQFTTG  159 (303)
T ss_dssp             CEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHHCCBCCCT----------TTCHHHHHHHHHTHH
T ss_pred             cEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhcCeEeCCC----------CCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999875  8999999999999888888888          8999876 5899999


Q ss_pred             HHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCC-cEEEEEcCCCChHHH
Q psy5622         170 LEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLE-IVDQGVESDRCASFS  227 (269)
Q Consensus       170 ~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~-~~vigVe~~~~~~~~  227 (269)
                      +||++|++ .+|+||+|+|+||+++|++.++|++       .|. +++|+|||++++++.
T Consensus       160 ~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~-------~p~~~~vigve~~~~~~~~  212 (303)
T 1o58_A          160 PEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGF-------FGNGVKIVAVEPAKSPVLS  212 (303)
T ss_dssp             HHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHH-------HGGGSEEEEEEETTSCTTT
T ss_pred             HHHHHHcCCCCCEEEEeeCCcccHHHHHHHHHHh-------CCCCCEEEEEecCCCcccc
Confidence            99999998 4999999999999999999999998       788 999999999998775

>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*

Probab=100.00  E-value=3.2e-43  Score=319.66  Aligned_cols=235  Identities=18%  Similarity=0.096  Sum_probs=196.1

Q ss_pred             ceeccccCCcccccc-ccccCCCeEEEEeCCCCC--CCchhhHHHHHHHHhchHhcCCccEEEe--CCChHHHHHHHHHH
Q psy5622          14 GFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQV--TGSFKERGACYALLMLSEDQKKKGVISA--SLGNHAQAMCYHGS   88 (269)
Q Consensus        14 ~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~np--tGS~K~R~a~~~l~~~~~~~~~~~vv~~--SsGN~g~alA~~a~   88 (269)
                      .+.+.+++|||++++ |++..|++||+|+|++||  +||||||.+.+++.++. +.+.++||++  |+||||+|+|++|+
T Consensus        14 ~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~p~~~gs~K~R~~~~~i~~a~-~~G~~~vv~~G~ssGN~g~alA~~a~   92 (325)
T 1j0a_A           14 RVELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDAL-SKGADVVITVGAVHSNHAFVTGLAAK   92 (325)
T ss_dssp             CCCCCCSCCCEEECHHHHHHHTSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHH-HTTCSEEEEECCTTCHHHHHHHHHHH
T ss_pred             CcccccCCCCceEhhhhhhhhCCEEEEEecccCCCCCCchHHHHHHHHHHHHH-HcCCCEEEEcCCcchHHHHHHHHHHH
Confidence            366788999999998 888889999999999999  89999999999999875 4456789996  99999999999999


Q ss_pred             hcCCCeEEEEcCCC-cHHHHHHHHHcCCEEEEeCCCHH-----HHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchh
Q psy5622          89 RLNIPVTVVMPIVA-PIMKIQACRRYGATVIVEGADMK-----EAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIM  162 (269)
Q Consensus        89 ~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~  162 (269)
                      ++|++|++|||+++ +..|++.++.|||+|+.++++++     ++.+.+++++++.+..|+.+        .+++|+...
T Consensus        93 ~~G~~~~iv~p~~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~p--------~~~~n~~~~  164 (325)
T 1j0a_A           93 KLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVIP--------PGGASPIGT  164 (325)
T ss_dssp             HTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCCSTTTHHHHHHHHHHHHTTSSCCEEEEC--------GGGCSHHHH
T ss_pred             HhCCcEEEEECCCCCCCchHHHHHHCCCEEEEeCcchhhhhhHHHHHHHHHHHHcCCceEEEc--------CCCCCHHHH
Confidence            99999999999999 99999999999999999986653     67788899998887755443        127899999


Q ss_pred             ccchhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHH--------Hc-
Q psy5622         163 AGQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAI--------KH-  232 (269)
Q Consensus       163 ~g~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~--------~~-  232 (269)
                      .||.+++.||++|++ .+|+||+|+|+||+++|+++++|++       +|.++||+|||.+++++..+.        .. 
T Consensus       165 ~g~~t~~~Ei~~q~~~~~d~vv~~vGtGGt~~Gi~~~lk~~-------~~~~~vigVe~~~~~~~~~~~~~t~~~~~~~~  237 (325)
T 1j0a_A          165 LGYVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSIL-------NEDIRPVGIAVGRFGEVMTSKLDNLIKEAAEL  237 (325)
T ss_dssp             THHHHHHHHHHHHCCCCCSEEEEEESSSHHHHHHHHHHHHT-------TCCCEEEEEECSSCSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEeCCchHhHHHHHHHHHhc-------CCCceEEEEEecCchHHHHHHHHHHHHHHHHh
Confidence            999999999999997 7999999999999999999999998       899999999999998765432        11 


Q ss_pred             -CCC--CCCCCcccccccccCCCCCHHHHHHHhhhhc
Q psy5622         233 -GKP--TPVSVQPTLADGLAVPLVGWNAFETAAPLID  266 (269)
Q Consensus       233 -g~~--~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~  266 (269)
                       |.+  .+........+.  +...+.++++.++++.+
T Consensus       238 ~g~~~~~~~~~~~~~~~~--~~v~d~e~~~a~~~l~~  272 (325)
T 1j0a_A          238 LGVKVEVRPELYDYSFGE--YGKITGEVAQIIRKVGT  272 (325)
T ss_dssp             TTCCCCSCCEEEECSTTS--TTCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCCcEEecCcccC--CCCCCHHHHHHHHHHHH
Confidence             211  122223334454  45667788888887764

>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*

Probab=100.00  E-value=7e-43  Score=319.41  Aligned_cols=236  Identities=15%  Similarity=0.100  Sum_probs=191.3

Q ss_pred             ceeccccCCcccccc-ccccC-C-CeEEEEeCCCC-C--CCchhhHHHHHHHHhchHhcCCccEEE--eCCChHHHHHHH
Q psy5622          14 GFVIRDQWFNSKKSH-LSELT-K-MEIFLKKDFFQ-V--TGSFKERGACYALLMLSEDQKKKGVIS--ASLGNHAQAMCY   85 (269)
Q Consensus        14 ~~~~~~~~TPl~~~~-l~~~~-g-~~i~~K~E~~n-p--tGS~K~R~a~~~l~~~~~~~~~~~vv~--~SsGN~g~alA~   85 (269)
                      .+.+.+++|||++++ |++.+ | .+||+|+|++| |  +||||||++.++|.++. +.+.++||+  +|+||||+|+|+
T Consensus         8 ~i~~~~~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~Gs~K~R~a~~~l~~a~-~~g~~~vv~~G~ssGN~g~alA~   86 (341)
T 1f2d_A            8 KYPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIV-EGDYTHLVSIGGRQSNQTRMVAA   86 (341)
T ss_dssp             CCCCSSSSCCEEECHHHHHHTTTCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHH-HSCCSEEEEEEETTCHHHHHHHH
T ss_pred             CcccCCCCCcceeHHhHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHH-HcCCCEEEEcCCcchHHHHHHHH
Confidence            356778999999998 98888 8 89999999999 9  99999999999999886 455679999  999999999999


Q ss_pred             HHHhcCCCeEEEEcCCCc-----HH------HHHHHHHcCCEEEEeCCCH-----HHHHHHHHHHHhhhCCeeecCCCCC
Q psy5622          86 HGSRLNIPVTVVMPIVAP-----IM------KIQACRRYGATVIVEGADM-----KEAKNIALKKGAELGLTYINGYLSS  149 (269)
Q Consensus        86 ~a~~~G~~~~ivvp~~~~-----~~------~~~~l~~~Ga~v~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~  149 (269)
                      +|+++|++|++|||++++     +.      |+++++.|||+|+.+++++     +++.+.+++++++.+..|+.+    
T Consensus        87 ~a~~~G~~~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~i~----  162 (341)
T 1f2d_A           87 LAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIP----  162 (341)
T ss_dssp             HHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHHHHHHHHHHTTCCEEEEC----
T ss_pred             HHHHhCCceEEEeccCCCccccccccccccccHHHHHhCCCEEEEeCCccchhHHHHHHHHHHHHHhcCCcEEEeC----
Confidence            999999999999999887     44      9999999999999998643     367778888888876333322    


Q ss_pred             CccccC-CCCcchhccchhHHHHHHhhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCCh
Q psy5622         150 GLSVLG-YDHPDIMAGQGTVGLEIVDQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCA  224 (269)
Q Consensus       150 ~~~~~g-~~n~~~~~g~~t~~~EI~~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~  224 (269)
                          ++ |+||.+++||.+++.||++|++    .||+||+|+|+||+++|++.+|+++       ++.++|++|||.+++
T Consensus       163 ----~~~~~np~~~~G~~t~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~-------~~~~~vigVe~~~~~  231 (341)
T 1f2d_A          163 ----AGCSEHKYGGLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQY-------GRQDDVIAIDASFTS  231 (341)
T ss_dssp             ----GGGTTSTTTTTHHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHGGG-------TCGGGEEEEECSSCH
T ss_pred             ----CCcCCCCccHHHHHHHHHHHHHHHHhcCCCCCEEEEecCchHhHHHHHHHHHhc-------CCCceEEEEEecCch
Confidence                34 6899999999999999999996    7999999999999999999999998       899999999999998


Q ss_pred             HHHHHH----H----c--CCCC--C-CCCcccccccccCCCCCHHHHHHHhhhhc
Q psy5622         225 SFSTAI----K----H--GKPT--P-VSVQPTLADGLAVPLVGWNAFETAAPLID  266 (269)
Q Consensus       225 ~~~~~~----~----~--g~~~--~-~~~~~t~a~gl~~~~~~~~~~~~~~~~~~  266 (269)
                      ++...-    .    .  |.+.  + ........++. +..++..+++.++++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~-~~v~d~e~~~a~~~l~~  285 (341)
T 1f2d_A          232 EKTKEQTLRIANNTAKLIGVEHEFKDFTLDTRFAYPC-YGVPNEGTIEAIRTCAE  285 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCSCCCEECTTSTTB-TTBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcCeEEEecCcccce-EecCCHHHHHHHHHHHH
Confidence            875421    0    1  2111  1 11122222332 34566777888777654

>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*

Probab=100.00  E-value=4.2e-43  Score=329.80  Aligned_cols=195  Identities=19%  Similarity=0.246  Sum_probs=171.0

Q ss_pred             eeccccCCcccccc-ccccCC--CeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHHH
Q psy5622          15 FVIRDQWFNSKKSH-LSELTK--MEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGS   88 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~~~~g--~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a~   88 (269)
                      +...+++|||++++ |++.+|  ++||+|+|++|||||||||++.+++.++.+.+.   ..+||++|+||||+|+|++|+
T Consensus       102 i~~~ig~TPLv~l~~Ls~~~G~~~~v~lK~E~~nptGSfKdR~a~~~i~~a~~~G~l~~g~tVV~aSsGN~G~AlA~aaa  181 (435)
T 1jbq_A          102 ILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAA  181 (435)
T ss_dssp             GGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTCSCTTCEEEEECSSHHHHHHHHHHH
T ss_pred             HHhhCCCCCeEECcchhhHhCCCceEEEEECCCCCcCCHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHH
Confidence            45678999999998 888877  689999999999999999999999998765443   368999999999999999999


Q ss_pred             hcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC--CHHH---HHHHHHHHHhhhC-CeeecCCCCCCccccCCCCcc-h
Q psy5622          89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA--DMKE---AKNIALKKGAELG-LTYINGYLSSGLSVLGYDHPD-I  161 (269)
Q Consensus        89 ~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~~~~---~~~~a~~~~~~~~-~~~~~~~~~~~~~~~g~~n~~-~  161 (269)
                      ++|++|+||||++++..|+++++.|||+|+.++.  ++++   ..+.+++++++.+ .+|++|          |+|+. .
T Consensus       182 ~~Gi~~~IvmP~~~s~~k~~~l~~~GAeVv~v~~~~~~d~~~~~~~~a~~la~~~~~~~~i~q----------~~n~~n~  251 (435)
T 1jbq_A          182 VRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQ----------YRNASNP  251 (435)
T ss_dssp             HHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHHHHHHSTTEECCCT----------TTCTHHH
T ss_pred             HcCCeEEEEeCCCCCHHHHHHHHhCCCEEEEecCCCCcchHHHHHHHHHHHHHhcCCeEEeCc----------cCCcccH
Confidence            9999999999999999999999999999999974  4655   3567888888765 456777          88886 4


Q ss_pred             hccchhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622         162 MAGQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF  226 (269)
Q Consensus       162 ~~g~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~  226 (269)
                      +.||.+++.||++|++ .+|+||+|+|+||+++|++.++|+.       .|.++||+|||.+++.+
T Consensus       252 ~ag~~t~a~EI~eQl~~~~D~vVvpvGtGGtlaGi~~~lk~~-------~p~vrVigVep~gs~~~  310 (435)
T 1jbq_A          252 LAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEK-------CPGCRIIGVDPEGSILA  310 (435)
T ss_dssp             HHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHH-------CTTCEEEEEEETTCSCS
T ss_pred             HHHHHHHHHHHHHHcCCCCCEEEEecCCcHhHHHHHHHHHHh-------CCCCEEEEEecCCchhh
Confidence            6889999999999997 7999999999999999999999999       89999999999998654

>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*

Probab=100.00  E-value=1.2e-43  Score=323.83  Aligned_cols=200  Identities=19%  Similarity=0.128  Sum_probs=171.7

Q ss_pred             ceeccccCCcccccc-ccccC-C-CeEEEEeCCCC-C--CCchhhHHHHHHHHhchHhcCCccEEE--eCCChHHHHHHH
Q psy5622          14 GFVIRDQWFNSKKSH-LSELT-K-MEIFLKKDFFQ-V--TGSFKERGACYALLMLSEDQKKKGVIS--ASLGNHAQAMCY   85 (269)
Q Consensus        14 ~~~~~~~~TPl~~~~-l~~~~-g-~~i~~K~E~~n-p--tGS~K~R~a~~~l~~~~~~~~~~~vv~--~SsGN~g~alA~   85 (269)
                      .+.+.+++|||++++ |++.+ | .+||+|+|++| |  |||||||++.+++.++. +.+.++||+  +|+||||+|+|+
T Consensus         8 ~i~~~~~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~gs~K~R~a~~~l~~a~-~~g~~~vv~~GassGN~g~alA~   86 (338)
T 1tzj_A            8 RYPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEAL-AQGCDTLVSIGGIQSNQTRQVAA   86 (338)
T ss_dssp             CCCCSSSSCCEEECHHHHHHTTSSSEEEEEEGGGSCSSTTCCHHHHHHHTTHHHHH-HTTCCEEEEEEETTCHHHHHHHH
T ss_pred             ccccCCCCCccEEHHHHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHH-HcCCCEEEEcCCchhHHHHHHHH
Confidence            467788999999998 88888 8 79999999997 8  99999999999999885 445578888  899999999999


Q ss_pred             HHHhcCCCeEEEEcCCCcHH--------HHHHHHHcCCEEEEeCCCHHHH-----HHHHHHHHhhhCCeeecCCCCCCcc
Q psy5622          86 HGSRLNIPVTVVMPIVAPIM--------KIQACRRYGATVIVEGADMKEA-----KNIALKKGAELGLTYINGYLSSGLS  152 (269)
Q Consensus        86 ~a~~~G~~~~ivvp~~~~~~--------~~~~l~~~Ga~v~~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~  152 (269)
                      +|+++|++|++|||+++++.        |+++++.|||+|+.++++++++     .+.+++++++.+..|+.+       
T Consensus        87 ~a~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~p-------  159 (338)
T 1tzj_A           87 VAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIP-------  159 (338)
T ss_dssp             HHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHTTCCEEECC-------
T ss_pred             HHHHhCCceEEEecCCCCccccccccCccHHHHHhCCCEEEEeCCcchhhHHHHHHHHHHHHHhcCCceEEeC-------
Confidence            99999999999999988765        9999999999999999877653     677888888776656554       


Q ss_pred             ccC-CCCcchhccchhHHHHHHhhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH
Q psy5622         153 VLG-YDHPDIMAGQGTVGLEIVDQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS  227 (269)
Q Consensus       153 ~~g-~~n~~~~~g~~t~~~EI~~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~  227 (269)
                       .+ ++||.+++||.+++.||++|++    .+|+||+|+|+||+++|++.++|++    |  .|. +||+|||.+++++.
T Consensus       160 -~~~~~n~~~~~g~~t~~~Ei~~q~~~~~~~~d~vv~~vG~GGt~~Gi~~~~k~~----g--~~~-~vigve~~~~~~~~  231 (338)
T 1tzj_A          160 -AGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAAD----G--RAD-RVIGVDASAKPAQT  231 (338)
T ss_dssp             -GGGTSSTTTTTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHHHHHHHTT----T--CGG-GEEEEECSSCHHHH
T ss_pred             -CCcCCCcccHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCcHHHHHHHHHHHhh----C--CCC-eEEEEEccCchHHH
Confidence             34 6899999999999999999995    7999999999999999999999975    1  456 99999999998876


Q ss_pred             HH
Q psy5622         228 TA  229 (269)
Q Consensus       228 ~~  229 (269)
                      .+
T Consensus       232 ~~  233 (338)
T 1tzj_A          232 RE  233 (338)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=100.00  E-value=2.5e-42  Score=332.46  Aligned_cols=196  Identities=19%  Similarity=0.178  Sum_probs=175.1

Q ss_pred             ceeccccCCcccccc-ccccCC--CeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHH
Q psy5622          14 GFVIRDQWFNSKKSH-LSELTK--MEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHG   87 (269)
Q Consensus        14 ~~~~~~~~TPl~~~~-l~~~~g--~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a   87 (269)
                      .+...+|+|||++++ |++.+|  ++||+|+|++|||||||||++.+++.++.+.+.   ..+|+++|+||||+|+|++|
T Consensus        53 ~i~~~ig~TPl~~l~~l~~~~g~~~~i~~K~E~~~ptGS~K~R~a~~~i~~a~~~g~~~~g~~vv~~ssGN~g~a~A~~a  132 (527)
T 3pc3_A           53 NILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGLLKPGYTIIEPTSGNTGIGLAMAC  132 (527)
T ss_dssp             SGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHHTCCCTTCEEEEECSSHHHHHHHHHH
T ss_pred             hHHhhcCCCCcEEcchhhhhcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHH
Confidence            355678999999998 888887  699999999999999999999999998764443   27899999999999999999


Q ss_pred             HhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC--CHH---HHHHHHHHHHhhhCC-eeecCCCCCCccccCCCCcc-
Q psy5622          88 SRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA--DMK---EAKNIALKKGAELGL-TYINGYLSSGLSVLGYDHPD-  160 (269)
Q Consensus        88 ~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~~~---~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~g~~n~~-  160 (269)
                      +++|++|+||||++++..|+++++.|||+|+.++.  +++   .+.+.+++++++.+. +|+++          |+||. 
T Consensus       133 ~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~n~~n  202 (527)
T 3pc3_A          133 AVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQ----------YRNAGN  202 (527)
T ss_dssp             HHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTTSCTTSTTSHHHHHHHHHHHSSSEECCCT----------TTCTHH
T ss_pred             HHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCCcccHHHHHHHHHHHHHhCCCcEecCC----------CCCcch
Confidence            99999999999999999999999999999999974  454   367788889888764 55677          88986 


Q ss_pred             hhccchhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622         161 IMAGQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF  226 (269)
Q Consensus       161 ~~~g~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~  226 (269)
                      .++||.+++.||++|++ .+|+||+|+|+||+++|++.++|+.       .|.+++|||||++++.+
T Consensus       203 ~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~GG~~~G~~~~~k~~-------~p~~~vigve~~~~~~~  262 (527)
T 3pc3_A          203 PLAHYDGTAAEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQ-------VPSCQIVGVDPYGSILA  262 (527)
T ss_dssp             HHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHH-------CTTSEEEEEEETTCCCS
T ss_pred             HHHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHHh-------CCCCEEEEEecCCcccc
Confidence            67899999999999997 7999999999999999999999999       89999999999999754

>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus}

Probab=100.00  E-value=2.4e-42  Score=324.01  Aligned_cols=233  Identities=21%  Similarity=0.211  Sum_probs=181.2

Q ss_pred             CCcccccc-ccccC-CCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEE
Q psy5622          21 WFNSKKSH-LSELT-KMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVM   98 (269)
Q Consensus        21 ~TPl~~~~-l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivv   98 (269)
                      +|||++++ |++.+ |.+||+|+|++|||||||+|++.+++..+.+.++...|+++|+||||+|+|++|+++|++|+|||
T Consensus        77 ~TPL~~~~~Ls~~~gg~~i~lK~E~l~ptGSfK~R~a~~~i~~a~~~g~~~vI~~~ssGNhg~avA~aaa~~Gi~~~I~m  156 (418)
T 1x1q_A           77 PTPLYHAKRLSEYWGGAQVFLKREDLLHTGAHKINNTLGQALLARRMGKRRVIAETGAGQHGVSVATVAALFGLECVVYM  156 (418)
T ss_dssp             SCCEEECHHHHHHHTSSEEEEEEGGGSGGGBTTHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCcEEhHHhHhhcCCceEEEEEccCCcCccHHHHHHHHHHHHHHHcCCCEEEEecCchHHHHHHHHHHHHcCCCEEEEE
Confidence            69999998 99888 58999999999999999999999998876544444445569999999999999999999999999


Q ss_pred             cCCCc---HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHH-HHhhh-CCeeecCCCCCCccccCCC--Ccc--hh-ccc
Q psy5622          99 PIVAP---IMKIQACRRYGATVIVEG---ADMKEAKNIALK-KGAEL-GLTYINGYLSSGLSVLGYD--HPD--IM-AGQ  165 (269)
Q Consensus        99 p~~~~---~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~-~~~~~-~~~~~~~~~~~~~~~~g~~--n~~--~~-~g~  165 (269)
                      |+...   ..|+.+++.|||+|+.++   ++++++.+.+.+ ++++. +.+|+.++         +.  +|+  .+ +||
T Consensus       157 p~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~~a~~~a~~~~~~~~~~~~~i~~~---------~~n~~p~~~~v~~gq  227 (418)
T 1x1q_A          157 GEEDVRRQALNVFRMKLLGAEVRPVAAGSRTLKDATNEAIRDWITNVRTTFYILGS---------VVGPHPYPMMVRDFQ  227 (418)
T ss_dssp             EHHHHHTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHTTTTEEECCCC---------SSSSTTHHHHHHHHH
T ss_pred             CCCcchhhhHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCC---------ccCCCCcHHHHHHHH
Confidence            98532   367889999999999987   388999887755 46664 45676442         32  332  33 599


Q ss_pred             hhHHHHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCC----hHHHHHHHcCCCC
Q psy5622         166 GTVGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRC----ASFSTAIKHGKPT  236 (269)
Q Consensus       166 ~t~~~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~----~~~~~~~~~g~~~  236 (269)
                      .|++.||++|+.     .||+||+|+|+||+++|++.++|++.      +|.+++|+|||.++    +.+..+++.|.+.
T Consensus       228 ~t~~~Ei~~Ql~~~~~~~~D~vvvpvGgGG~~~Gi~~~~k~l~------~p~~~vigVe~~g~~~~~~~~~~~l~~G~~~  301 (418)
T 1x1q_A          228 SVIGEEVKRQSLELFGRLPDALIAAVGGGSNAIGLFAPFAYLP------EGRPKLIGVEAAGEGLSTGRHAASIGAGKRG  301 (418)
T ss_dssp             THHHHHHHHHHHHHHSSCCSEEEEECSSSSHHHHHHHHHHTSC------TTCCEEEEEEECCTTSSSCHHHHHHHHTCEE
T ss_pred             HHHHHHHHHHHHhhcCCCCCEEEEecCCcHhHHHHHHHHHHhC------CCCCeEEEEecCCcccccHHHHHHHHcCCee
Confidence            999999999983     49999999999999999999998751      67899999999997    5788899988754


Q ss_pred             C---------------CCCcccccccccCCCCCHHHHHHHhhhhccc
Q psy5622         237 P---------------VSVQPTLADGLAVPLVGWNAFETAAPLIDKM  268 (269)
Q Consensus       237 ~---------------~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~  268 (269)
                      .               ....+|+++||+++.+++..+...++.+|++
T Consensus       302 ~~~g~~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~~~~  348 (418)
T 1x1q_A          302 VLHGSYMYLLYDHDGQITPAHSVSAGLDYPGVGPEHSYYADAGVAEY  348 (418)
T ss_dssp             EETTEEEEBCCC----------------CSBCCHHHHHHHHHTSEEE
T ss_pred             eeccccccccccccccccCCceeeeccCCCCCCHHHHHHHhccCeEE
Confidence            2               1235699999999989988887777776654

>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B*

Probab=100.00  E-value=2.7e-42  Score=320.49  Aligned_cols=230  Identities=25%  Similarity=0.247  Sum_probs=184.9

Q ss_pred             CCcccccc-ccccCC-CeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEE-EeCCChHHHHHHHHHHhcCCCeEEE
Q psy5622          21 WFNSKKSH-LSELTK-MEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVI-SASLGNHAQAMCYHGSRLNIPVTVV   97 (269)
Q Consensus        21 ~TPl~~~~-l~~~~g-~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv-~~SsGN~g~alA~~a~~~G~~~~iv   97 (269)
                      +|||++++ |++.+| .+||+|+|++|||||||||++.+++..+.+ .+..++| ++|+||||+|+|++|+++|++|+||
T Consensus        50 ~TPL~~~~~l~~~~g~~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~-~g~~~vv~~~ssGN~g~a~A~aa~~~G~~~~iv  128 (388)
T 1v8z_A           50 PTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKF-MGKTRLIAETGAGQHGVATAMAGALLGMKVDIY  128 (388)
T ss_dssp             SCCEEECHHHHHHHTSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHH-TTCCEEEEEESSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCceehHhhHhhcCCceEEEEeccCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEecCchHHHHHHHHHHHHcCCcEEEE
Confidence            49999998 988886 799999999999999999999999987643 3444555 5999999999999999999999999


Q ss_pred             EcCC-Cc--HHHHHHHHHcCCEEEEeCC---CHHHHHHHHHH-HHhhh-CCeeecCCCCCCccccCCCCc--c--hh-cc
Q psy5622          98 MPIV-AP--IMKIQACRRYGATVIVEGA---DMKEAKNIALK-KGAEL-GLTYINGYLSSGLSVLGYDHP--D--IM-AG  164 (269)
Q Consensus        98 vp~~-~~--~~~~~~l~~~Ga~v~~~~~---~~~~~~~~a~~-~~~~~-~~~~~~~~~~~~~~~~g~~n~--~--~~-~g  164 (269)
                      ||+. .+  ..|+++++.|||+|+.++.   +++++.+.+.+ ++++. +.+|+.++         +.|+  +  .+ .|
T Consensus       129 ~p~~~~~~~~~~~~~~~~~GA~V~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~---------~~n~~p~~~~~~~~  199 (388)
T 1v8z_A          129 MGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGS---------VVGPHPYPTIVRDF  199 (388)
T ss_dssp             EEHHHHTTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCS---------SCSSTTHHHHHHHH
T ss_pred             EcCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCceEecCC---------ccCCCCchhHHHHH
Confidence            9975 22  3568899999999999975   88999888754 56665 44665432         4332  2  33 48


Q ss_pred             chhHHHHHHhhc----C-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChH----HHHHHHcCCC
Q psy5622         165 QGTVGLEIVDQV----A-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCAS----FSTAIKHGKP  235 (269)
Q Consensus       165 ~~t~~~EI~~ql----~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~----~~~~~~~g~~  235 (269)
                      |.|++.||++|+    + .+|+||+|+|+||+++|++.+++ .       +|.+++|+|||.++..    +..+++.|++
T Consensus       200 ~~t~~~Ei~~q~~~~~~~~~d~vvvpvG~GG~~aGi~~~~~-~-------~~~~~vigve~~~~~~~~~~~~~~l~~g~~  271 (388)
T 1v8z_A          200 QSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV-N-------DKKVKLVGVEAGGKGLESGKHSASLNAGQV  271 (388)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT-T-------CTTSEEEEEEEEETBGGGTBSCCHHHHCEE
T ss_pred             hHHHHHHHHHHHHHhcCCCCCEEEEecCccHhHHHHHHHHh-h-------CCCceEEEEccCccccchhhhhHHHhcCCc
Confidence            999999999999    4 59999999999999999999887 4       7899999999999643    3456667754


Q ss_pred             CC---------------CCCcccccccccCCCCCHHHHHHHhhhhccc
Q psy5622         236 TP---------------VSVQPTLADGLAVPLVGWNAFETAAPLIDKM  268 (269)
Q Consensus       236 ~~---------------~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~  268 (269)
                      ..               ....+|+++||+++.++...+...++.+|++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~g~~~~~~~~~~~~~~  319 (388)
T 1v8z_A          272 GVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEY  319 (388)
T ss_dssp             EEETTEEEEECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTTSEEE
T ss_pred             eeccccccccccccccccCCCceeeeccccCCCChhHHHHHhcCCcEE
Confidence            21               1235799999998888888887777776654

>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...

Probab=100.00  E-value=5.4e-42  Score=319.50  Aligned_cols=230  Identities=22%  Similarity=0.241  Sum_probs=187.1

Q ss_pred             CCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEE-eCCChHHHHHHHHHHhcCCCeEEEE
Q psy5622          21 WFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVIS-ASLGNHAQAMCYHGSRLNIPVTVVM   98 (269)
Q Consensus        21 ~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~-~SsGN~g~alA~~a~~~G~~~~ivv   98 (269)
                      +|||++++ |++.+|.+||+|+|++|||||||||++.+++..+.+ .+..++|+ +|+||||+|+|++|+++|++|+|||
T Consensus        55 ~TPL~~~~~l~~~~g~~i~lK~E~l~ptGSfK~R~a~~~~~~a~~-~g~~~vi~e~ssGNhg~a~A~aa~~~G~~~~i~m  133 (396)
T 1qop_B           55 PTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKR-MGKSEIIAETGAGQHGVASALASALLGLKCRIYM  133 (396)
T ss_dssp             SCCEEECHHHHTTSSEEEEEEEGGGSTTSBTHHHHHHHHHHHHHH-TTCCEEEEEESSSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCcEEhhhhhhccCCeEEEEeccCCCCCcHHHHHHHHHHHHHHH-cCcCEEEEecCchHHHHHHHHHHHHCCCcEEEEE
Confidence            59999998 999899999999999999999999999999987654 44456666 8999999999999999999999999


Q ss_pred             cCC-CcH--HHHHHHHHcCCEEEEeCC---CHHHHHHHHHHH-Hhhh-CCeeecCCCCCCccccCCCC--cc--hh-ccc
Q psy5622          99 PIV-API--MKIQACRRYGATVIVEGA---DMKEAKNIALKK-GAEL-GLTYINGYLSSGLSVLGYDH--PD--IM-AGQ  165 (269)
Q Consensus        99 p~~-~~~--~~~~~l~~~Ga~v~~~~~---~~~~~~~~a~~~-~~~~-~~~~~~~~~~~~~~~~g~~n--~~--~~-~g~  165 (269)
                      |+. .+.  .|+.+|+.+||+|+.++.   +++++.+.+.+. +++. +.+|+.++         +.|  |+  .+ .||
T Consensus       134 p~~~~~~~~~~~~~~~~~GA~V~~v~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~---------~~n~~p~~~~v~~g~  204 (396)
T 1qop_B          134 GAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGT---------AAGPHPYPTIVREFQ  204 (396)
T ss_dssp             EHHHHHHCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCS---------SCSSTTHHHHHHHTT
T ss_pred             cCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHhccCCcEEEeCC---------cCCCCCchHHHHHHH
Confidence            985 443  457899999999999974   889998888764 5554 44565442         333  32  23 489


Q ss_pred             hhHHHHHHhhc----C-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCCh----HHHHHHHcCCCC
Q psy5622         166 GTVGLEIVDQV----A-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCA----SFSTAIKHGKPT  236 (269)
Q Consensus       166 ~t~~~EI~~ql----~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~----~~~~~~~~g~~~  236 (269)
                      .+++.||++|+    + .||+||+|+|+||+++|++.+++ .       +|.+++|+|||.++.    ++..+++.|.+.
T Consensus       205 ~t~~~Ei~~Ql~~~~~~~~d~vvvpvG~GG~~~Gi~~~~~-~-------~~~~~vigVe~~~~~~~~~~~~~~l~~g~~~  276 (396)
T 1qop_B          205 RMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFI-N-------DTSVGLIGVEPGGHGIETGEHGAPLKHGRVG  276 (396)
T ss_dssp             THHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT-T-------CTTSEEEEEEEEETBGGGTBSCCHHHHSEEE
T ss_pred             hHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHh-c-------CCCCEEEEEeCCCccccchhhHHHHHcCCee
Confidence            99999999999    4 69999999999999999999998 5       789999999999964    355677777542


Q ss_pred             C---------------CCCcccccccccCCCCCHHHHHHHhhhhccc
Q psy5622         237 P---------------VSVQPTLADGLAVPLVGWNAFETAAPLIDKM  268 (269)
Q Consensus       237 ~---------------~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~  268 (269)
                      .               ....+|+++||+++.+++..+...++++|++
T Consensus       277 ~~~g~~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~~~~  323 (396)
T 1qop_B          277 IYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADY  323 (396)
T ss_dssp             EETEEEEEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHHTTSSEE
T ss_pred             eeccchhhhcccccCCcCCCceeeccCCCCCCCHHHHHHHhcCCeEE
Confidence            1               1235799999999888888887777776654

>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1

Probab=100.00  E-value=1.6e-41  Score=315.22  Aligned_cols=189  Identities=19%  Similarity=0.150  Sum_probs=171.6

Q ss_pred             cCCcccccc-ccccCCCeEEEEeCCCCC-CCchhhHHHHHHHHhchHh-cCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622          20 QWFNSKKSH-LSELTKMEIFLKKDFFQV-TGSFKERGACYALLMLSED-QKKKGVISASLGNHAQAMCYHGSRLNIPVTV   96 (269)
Q Consensus        20 ~~TPl~~~~-l~~~~g~~i~~K~E~~np-tGS~K~R~a~~~l~~~~~~-~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i   96 (269)
                      .+|||++++ |++. |.+||+|+|++|| |||||||++.+++..+... ...++|+++|+||||+|+|++|+++|++|+|
T Consensus        95 ~~TPL~~l~~Ls~~-g~~IylK~E~lnp~tGS~K~R~a~~~i~~l~~a~~~g~~Iv~assGNhG~AlA~aaa~~Gl~~~i  173 (389)
T 1wkv_A           95 KPTPLVRSRLQLPN-GVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEKGSLVADATSSNFGVALSAVARLYGYRARV  173 (389)
T ss_dssp             CSCCEEECCCCCST-TEEEEEEEGGGSTTTSBTTHHHHHHHHHHHTTTSCTTCEEEEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCeEEccccccC-CCeEEEEEcCCCCCcCChHHHHHHHHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence            579999998 8876 8899999999999 9999999999999883211 1237899999999999999999999999999


Q ss_pred             EEcCCCcHHHHHHHHHcCCEEE-EeC-CCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcc-hhccchhHHHHHH
Q psy5622          97 VMPIVAPIMKIQACRRYGATVI-VEG-ADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPD-IMAGQGTVGLEIV  173 (269)
Q Consensus        97 vvp~~~~~~~~~~l~~~Ga~v~-~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~-~~~g~~t~~~EI~  173 (269)
                      |||+++++.|+.+|+.+||+|+ .++ ++++++.+.+++++++.+++|++|          |+||. .++||.+++.||+
T Consensus       174 vmp~~~~~~k~~~~~~~GAeVv~~v~~~~~~da~~~a~~~~~~~g~~~~~p----------~~N~~~~~~~~~t~g~Ei~  243 (389)
T 1wkv_A          174 YLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNEGFVHVNQ----------FYNDANFEAHMRGTAREIF  243 (389)
T ss_dssp             EEETTSCHHHHHHHHHTTCEEEEETTCSSSGGGHHHHHHHHHHHCCEECCT----------TTCHHHHHHHHHTHHHHHH
T ss_pred             EECCCCCHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHccCcEecCc----------CCChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999 887 788999999999988889999999          88876 6788999999999


Q ss_pred             hhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622         174 DQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF  226 (269)
Q Consensus       174 ~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~  226 (269)
                      +|+.    .||+||+|+|+||+++|++.+|++.       .|.+++|+|||.+++++
T Consensus       244 ~Q~~~~g~~~D~vv~~vG~GG~~~Gi~~~~k~~-------~p~vrvigVe~~~~~~l  293 (389)
T 1wkv_A          244 VQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSV-------DPSIRAVLVQPAQGDSI  293 (389)
T ss_dssp             HHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHH-------CTTCEEEEEEECTTCCC
T ss_pred             HHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHh-------CCCCeEEEEecCCCCcc
Confidence            9994    6999999999999999999999998       89999999999987655

>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A

Probab=100.00  E-value=1e-40  Score=313.15  Aligned_cols=233  Identities=22%  Similarity=0.216  Sum_probs=155.1

Q ss_pred             cCCcccccc-ccccCC-CeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEE
Q psy5622          20 QWFNSKKSH-LSELTK-MEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVV   97 (269)
Q Consensus        20 ~~TPl~~~~-l~~~~g-~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~iv   97 (269)
                      .+|||++++ |++.+| .+||+|+|++|||||||+|++.+++..+.+.++...|+++|+||||+|+|++|+++|++|+||
T Consensus        80 ~~TPL~~~~~Ls~~~gg~~i~lK~E~lnptGSfK~R~a~~~~~~a~~~g~~~vI~~~ssGNhG~A~A~aaa~~G~~~~I~  159 (422)
T 2o2e_A           80 RPSPLYEATRLSQHAGSARIFLKREDLNHTGSHKINNVLGQALLARRMGKTRVIAETGAGQHGVATATACALLGLDCVIY  159 (422)
T ss_dssp             CSCCEEECGGGGGGTTTCEEEEECGGGCCSSTTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCeEEChhhHhhcCCCeEEEEEcCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEecCccHHHHHHHHHHHHcCCcEEEE
Confidence            359999998 999884 799999999999999999999999887654444445667999999999999999999999999


Q ss_pred             EcCCCc---HHHHHHHHHcCCEEEEeCC---CHHHHHHHHHH-HHhhh-CCeeecCCCCCCccccCCCCcc--h-hccch
Q psy5622          98 MPIVAP---IMKIQACRRYGATVIVEGA---DMKEAKNIALK-KGAEL-GLTYINGYLSSGLSVLGYDHPD--I-MAGQG  166 (269)
Q Consensus        98 vp~~~~---~~~~~~l~~~Ga~v~~~~~---~~~~~~~~a~~-~~~~~-~~~~~~~~~~~~~~~~g~~n~~--~-~~g~~  166 (269)
                      ||+...   ..|+.+|+.+||+|+.++.   +++++.+.+.+ ++++. +.+|+.+++      .+ .+|+  . ..||.
T Consensus       160 mp~~~~~~q~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~yi~~s~------~g-~~p~~~~v~~~q~  232 (422)
T 2o2e_A          160 MGGIDTARQALNVARMRLLGAEVVAVQTGSKTLKDAINEAFRDWVANADNTYYCFGTA------AG-PHPFPTMVRDFQR  232 (422)
T ss_dssp             EEHHHHHHSHHHHHHHHHTTCEEEEECSTTSCHHHHHHHHHHHHHHHTTTEEECCCCS------SS-CCCCHHHHHHHTT
T ss_pred             eCCCcchhhHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCcEEEeCCc------cC-CCCcHHHHHHHHH
Confidence            998632   4577899999999999874   78999887755 56654 446654421      11 1333  2 35899


Q ss_pred             hHHHHHHhhc----C-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCC----hHHHHHHHcCCCCC
Q psy5622         167 TVGLEIVDQV----A-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRC----ASFSTAIKHGKPTP  237 (269)
Q Consensus       167 t~~~EI~~ql----~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~----~~~~~~~~~g~~~~  237 (269)
                      +++.||++|+    + .||+||+|+|+||+++|++.+++ .       .|.+++|+|||.++    +++..++..|.+..
T Consensus       233 t~g~Ei~~Ql~~~~~~~pD~vvvpvG~GG~~~Gi~~~~~-~-------~p~v~vigVe~~g~~~~~~~~~~~l~~g~~~~  304 (422)
T 2o2e_A          233 IIGMEARVQIQGQAGRLPDAVVACVGGGSNAIGIFHAFL-D-------DPGVRLVGFEAAGDGVETGRHAATFTAGSPGA  304 (422)
T ss_dssp             HHHHHHHHHHHHHSSSCCSEEEEEGGGHHHHHTTSGGGT-T-------CTTCEEEEEEECC-------------------
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEccCCchhHHHHHHHHh-c-------CCCCeEEEEecCCCcccchhHHHHHHcCCcee
Confidence            9999999998    3 59999999999999999988874 3       68899999999998    56777888776542


Q ss_pred             C---------------CCcccccccccCCCCCHHHHHHHhhhhcc
Q psy5622         238 V---------------SVQPTLADGLAVPLVGWNAFETAAPLIDK  267 (269)
Q Consensus       238 ~---------------~~~~t~a~gl~~~~~~~~~~~~~~~~~~~  267 (269)
                      .               ....|+++||+++.+++..+...++.+++
T Consensus       305 ~~g~~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~~~  349 (422)
T 2o2e_A          305 FHGSFSYLLQDEDGQTIESHSISAGLDYPGVGPEHAWLKEAGRVD  349 (422)
T ss_dssp             ------------------------------------------CCE
T ss_pred             ccccchhhcccccccccCCceeecccCCCCCCHHHHHHHHhCCee
Confidence            1               23478999999887777666555555444

>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1

Probab=100.00  E-value=3.7e-38  Score=296.25  Aligned_cols=209  Identities=16%  Similarity=0.139  Sum_probs=179.3

Q ss_pred             cCCccccccccccCCCeEEEEeCCC-CCCCchhhHHHHHHH---HhchHhcCCccEEEeCCChHHHHHH-HHHHhcCCCe
Q psy5622          20 QWFNSKKSHLSELTKMEIFLKKDFF-QVTGSFKERGACYAL---LMLSEDQKKKGVISASLGNHAQAMC-YHGSRLNIPV   94 (269)
Q Consensus        20 ~~TPl~~~~l~~~~g~~i~~K~E~~-nptGS~K~R~a~~~l---~~~~~~~~~~~vv~~SsGN~g~alA-~~a~~~G~~~   94 (269)
                      ++|||++++      .+||+ +|.+ |||||||||++.+++   .++ ++++..+|+++|+||||+|+| .+|+++|++|
T Consensus        82 ~~TPL~~l~------~~i~~-~E~~~~pTgSfKdr~a~~l~~~l~~a-~~~~~~~Iv~atsGNtG~A~A~~~a~~~G~~~  153 (428)
T 1vb3_A           82 FPAPVANVE------SDVGC-LELFHGPTLAFKDFGGRFMAQMLTHI-AGDKPVTILTATSGDTGAAVAHAFYGLPNVKV  153 (428)
T ss_dssp             SCCCEEEEE------TTEEE-EECCCSTTSBTHHHHHHHHHHHHHHH-TTTCCEEEEEECSSSHHHHHHHHTTTCTTEEE
T ss_pred             CCCCeEEec------CCeEE-eeccCCCcccHHHHHHHHHHHHHHHH-HhcCCCEEEecCCchHHHHHHHHHhhhcCCeE
Confidence            689999864      17999 5555 799999999998874   444 346678899999999999999 5999999999


Q ss_pred             EEEEcC-CCcHHHHHHHHHcCCEE--EEeCCCHHHHHHHHHHHHhh------hCCeeecCCCCCCccccCCCCcchhccc
Q psy5622          95 TVVMPI-VAPIMKIQACRRYGATV--IVEGADMKEAKNIALKKGAE------LGLTYINGYLSSGLSVLGYDHPDIMAGQ  165 (269)
Q Consensus        95 ~ivvp~-~~~~~~~~~l~~~Ga~v--~~~~~~~~~~~~~a~~~~~~------~~~~~~~~~~~~~~~~~g~~n~~~~~g~  165 (269)
                      +||||+ ++++.|+++|+.+||+|  +.++++++++.+.+++++++      .+++++++           .||.+++||
T Consensus       154 ~I~~P~~~~s~~k~~~m~~~GA~V~~v~v~g~~d~~~~~~~~~~~d~~~~~~~~~~~~n~-----------~n~~~~~gq  222 (428)
T 1vb3_A          154 VILYPRGKISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNSANS-----------INISRLLAQ  222 (428)
T ss_dssp             EEEEETTCSCHHHHHHHHSCCTTEEEEEEESCHHHHHHHHHHGGGCHHHHHHHTEECCST-----------TSHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHHHHHhchhhhhhcCeeeCCC-----------CCHHHHHHH
Confidence            999999 49999999999999999  77889999999999887753      45555565           579999999


Q ss_pred             hhHHHHHHhhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCc
Q psy5622         166 GTVGLEIVDQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQ  241 (269)
Q Consensus       166 ~t~~~EI~~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~  241 (269)
                      .++++||++|+.    .+|+||+|+|+||+++|++.+++.-       .|.+|+|+|++.+ +.+.++++.|.+.+.+..
T Consensus       223 ~t~~~Ei~~ql~~~g~~~d~vvvpvG~GG~i~G~~~a~~~g-------~p~~kii~a~~~~-~~l~~~~~~G~~~~~~~~  294 (428)
T 1vb3_A          223 ICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGLLAKSLG-------LPVKRFIAATNVN-DTVPRFLHDGQWSPKATQ  294 (428)
T ss_dssp             THHHHHHHTTSCTTTTTSEEEEEECSSCHHHHHHHHHHHTT-------CCCSEEEEEECSC-CHHHHHHHHSCCCCCCCC
T ss_pred             HHHHHHHHHHcccccCCCCEEEEeCCchHHHHHHHHHHHcC-------CCCCeEEeecCCC-hHHHHHHHcCCcccCCCC
Confidence            999999999997    4899999999999999999998765       6777999999876 578899999987666667


Q ss_pred             ccccccccCCCCCH
Q psy5622         242 PTLADGLAVPLVGW  255 (269)
Q Consensus       242 ~t~a~gl~~~~~~~  255 (269)
                      .|+++||+++.|++
T Consensus       295 ~tis~g~~i~~p~~  308 (428)
T 1vb3_A          295 ATLSNAMDVSQPNN  308 (428)
T ss_dssp             CCSSGGGCCSSCTT
T ss_pred             CcccchhcCCCCcc
Confidence            89999999887766

>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV}

Probab=100.00  E-value=6.8e-38  Score=296.15  Aligned_cols=209  Identities=14%  Similarity=0.116  Sum_probs=179.8

Q ss_pred             CCccccccccccCCCeEEEEeCCCCCCCchhhHHHHHH---HHhch-HhcCCccEEEeCCChHH-HHHHHHHHhcCCCeE
Q psy5622          21 WFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYA---LLMLS-EDQKKKGVISASLGNHA-QAMCYHGSRLNIPVT   95 (269)
Q Consensus        21 ~TPl~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~---l~~~~-~~~~~~~vv~~SsGN~g-~alA~~a~~~G~~~~   95 (269)
                      .|||+++      +-++|+|.|++|||||||||++.++   +.++. +++...+|+++|||||| .+++++|+++|++|+
T Consensus        93 ~~pl~~l------~~~~~~kee~~~PTgSFKDRga~~~~~~l~~a~~~~g~~~~Vv~ASSGNtG~aa~aa~a~~~Gi~~~  166 (468)
T 4f4f_A           93 VCPLVQT------DANEFVLELFHGPTLAFKDVAMQLLARMMDYVLAQRGERATIVGATSGDTGGAAIEAFGGRDNTDIF  166 (468)
T ss_dssp             SSCEEEE------ETTEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSHHHHHHHHHHTTCSSEEEE
T ss_pred             CCceEEe------cCCeehHHhccCCcccHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCchHHHHHHHHHHhccCCcEE
Confidence            4888874      2369999999999999999999998   66553 33444689999999999 455777999999999


Q ss_pred             EEEcCC-CcHHHHHHHHHcCC-EE--EEeCCCHHHHHHHHHHHHhhh------CCeeecCCCCCCccccCCCCcchhccc
Q psy5622          96 VVMPIV-APIMKIQACRRYGA-TV--IVEGADMKEAKNIALKKGAEL------GLTYINGYLSSGLSVLGYDHPDIMAGQ  165 (269)
Q Consensus        96 ivvp~~-~~~~~~~~l~~~Ga-~v--~~~~~~~~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~g~~n~~~~~g~  165 (269)
                      |+||++ +++.|+.+|+.+|+ +|  +.++++++++.+.+++++++.      +++++|+           .||.+++||
T Consensus       167 I~~P~~~~s~~k~~~~~~~gganV~vv~v~g~fdda~~~~k~~~~d~~~~~~~~~~~vns-----------in~~ri~GQ  235 (468)
T 4f4f_A          167 ILFPNGRVSPVQQRQMTSSGFSNVHALSIEGNFDDCQNLVKGMFNDLEFCDALSLSGVNS-----------INWARIMPQ  235 (468)
T ss_dssp             EEEETTCSCHHHHHHHHCSCCTTEEEEEEESCHHHHHHHHHHHHHCHHHHHHHTEEECCT-----------TSHHHHGGG
T ss_pred             EEeCCCCCCHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHHhccccccccceEeCCC-----------CCHHHHHhH
Confidence            999998 99999999999974 54  678899999999999988765      4555665           589999999


Q ss_pred             hhHHHHHHhhcCCCCE---EEEecCcchHHHHHHhHHHHHHhcCCCCC-CCcEEEEEcCCCChHHHHHHHcCCCCCCCCc
Q psy5622         166 GTVGLEIVDQVANIDA---IVVPVGGGGLIAGVAYDHPDIMAGQGTVG-LEIVDQGVESDRCASFSTAIKHGKPTPVSVQ  241 (269)
Q Consensus       166 ~t~~~EI~~ql~~~d~---vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~-~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~  241 (269)
                      .|+++||++|++.+|.   |+||+|+||+++|++.+ +.+       + |..|+|+| +++++++.++|+.|++.+.+..
T Consensus       236 ~T~~~Ei~~ql~~~d~~v~vvVPvG~GG~i~g~~~A-k~m-------GlPi~kli~a-~n~~~~l~~~l~~G~~~~~~~~  306 (468)
T 4f4f_A          236 VVYYFTAALSLGAPDRAVSFTVPTGNFGDIFAGYVA-KRM-------GLPIEQLIIA-TNDNDILSRTLESGAYEMRGVA  306 (468)
T ss_dssp             HHHHHHHHHHTTTTSSCEEEEEECSSSHHHHHHHHH-HHH-------TCCEEEEEEE-ECSCCHHHHHHHHSEEECCCCC
T ss_pred             HHHHHHHHHhcccCCCCeEEEEEeCCcHHHHHHHHH-HHh-------CCCCCEEEEE-eCCchHHHHHHHcCCceecCCc
Confidence            9999999999998999   99999999999999987 555       4 56699999 9999999999999998777778


Q ss_pred             ccccccccCCCCCH
Q psy5622         242 PTLADGLAVPLVGW  255 (269)
Q Consensus       242 ~t~a~gl~~~~~~~  255 (269)
                      +|++++|+++.+++
T Consensus       307 ~Tia~smdi~~~sN  320 (468)
T 4f4f_A          307 QTTSPSMDIQISSN  320 (468)
T ss_dssp             CCSCGGGCCSSCTT
T ss_pred             ceeCchhhcCccch
Confidence            89999999988765

>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1

Probab=100.00  E-value=5.5e-37  Score=293.11  Aligned_cols=217  Identities=15%  Similarity=0.099  Sum_probs=179.9

Q ss_pred             ccCCcccc--cc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHH---hch-Hhc--------CCccEEEeCCChHHHHH
Q psy5622          19 DQWFNSKK--SH-LSELTKMEIFLKKDFFQVTGSFKERGACYALL---MLS-EDQ--------KKKGVISASLGNHAQAM   83 (269)
Q Consensus        19 ~~~TPl~~--~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~---~~~-~~~--------~~~~vv~~SsGN~g~al   83 (269)
                      +++|||++  ++ +     .+||+|+|++|||||||||++.+++.   ++. +.+        +..+|+++||||||.| 
T Consensus        94 ~g~TPLv~~~l~~l-----~~l~~K~e~~nPTgSFKDrga~~~~~~~~~a~~~~g~~~~~~~~~~~~Iv~ATSGNtG~A-  167 (514)
T 1kl7_A           94 DEVTPLVQNVTGDK-----ENLHILELFHGPTYAFKDVALQFVGNLFEYFLQRTNANLPEGEKKQITVVGATSGDTGSA-  167 (514)
T ss_dssp             TTSSCEECCTTCSS-----SCEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHHHTTSCSSSCCCEEEEEECSSSHHHH-
T ss_pred             CCCCceeehhcccc-----cchhhhhhccCCCCcHHHHHHHHHHHHHHHHHHhcCCccccccCCCCEEEECCCCcHHHH-
Confidence            78999999  75 5     57999999999999999999999854   332 123        3678999999999999 


Q ss_pred             HHHH--HhcCCCeEEEEcCC-CcHHHHHHH---HHcCCEEEEeCCCHHHHHHHHHHHHhhhC------CeeecCCCCCCc
Q psy5622          84 CYHG--SRLNIPVTVVMPIV-APIMKIQAC---RRYGATVIVEGADMKEAKNIALKKGAELG------LTYINGYLSSGL  151 (269)
Q Consensus        84 A~~a--~~~G~~~~ivvp~~-~~~~~~~~l---~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~  151 (269)
                      |++|  ++.|++|+|++|++ +++.++.+|   ..+|++++.++++++++.+.+++++++.+      +++.|+      
T Consensus       168 A~~a~a~~~Gi~~~I~~P~~~~S~~q~~qm~~~~g~~~~vv~v~g~fdda~~~vk~l~~~~~~~~~~~~~~~Ns------  241 (514)
T 1kl7_A          168 AIYGLRGKKDVSVFILYPTGRISPIQEEQMTTVPDENVQTLSVTGTFDNCQDIVKAIFGDKEFNSKHNVGAVNS------  241 (514)
T ss_dssp             HHHHHTTCTTEEEEEEEETTSSCHHHHHHHHHCCCTTEEEEEESSCHHHHHHHHHHHHHCSSCC--CCBCCCCS------
T ss_pred             HHHHHHhhcCCeEEEEEcCCCCCHHHHHHHhhhcCCCEEEEEcCCCHHHHHHHHHHHHhcccccccceeEeeCC------
Confidence            6666  89999999999997 999888888   45677888899999999999999988743      233333      


Q ss_pred             cccCCCCcchhccchhHHHHHHhhc-C----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622         152 SVLGYDHPDIMAGQGTVGLEIVDQV-A----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF  226 (269)
Q Consensus       152 ~~~g~~n~~~~~g~~t~~~EI~~ql-~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~  226 (269)
                           .|+.+++|+.+.++|+++|+ +    .+|+||+|+|+||++.|.+. ++++    |  .|.+|+|+|||++ +++
T Consensus       242 -----~N~~ri~gQ~tyy~e~~~ql~~~~~~~~d~~vvP~GngG~i~a~~~-ak~~----G--~p~~rli~v~~~n-~~l  308 (514)
T 1kl7_A          242 -----INWARILAQMTYYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGYF-AKKM----G--LPIEKLAIATNEN-DIL  308 (514)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHSSSSCCCEEEEEECSSSHHHHHHHH-HHHH----T--CCCCCEEEEECSC-CHH
T ss_pred             -----CCHhHHhhHHHHHHHHHHHHhhhcCCCCcEEEEECCchHHHHHHHH-HHHc----C--CCCCEEEEEeCCc-chH
Confidence                 48899999999999999998 4    48899999999999999885 4444    2  4678999999999 899


Q ss_pred             HHHHHcCCCCC-CCCcccccccccCCCCCHHHHHHHh
Q psy5622         227 STAIKHGKPTP-VSVQPTLADGLAVPLVGWNAFETAA  262 (269)
Q Consensus       227 ~~~~~~g~~~~-~~~~~t~a~gl~~~~~~~~~~~~~~  262 (269)
                      .++|+.|...+ .+...|++++|++..|++  |+++.
T Consensus       309 ~~~~~~G~~~~~~~~~~Tis~amdi~~psn--~er~l  343 (514)
T 1kl7_A          309 DRFLKSGLYERSDKVAATLSPAMDILISSN--FERLL  343 (514)
T ss_dssp             HHHHHHSEEECCSSCCCCSCGGGCCSSCTT--HHHHH
T ss_pred             HHHHhcCCccCCCCCCCeechhhhcCCCCc--HHHHH
Confidence            99999997655 556689999999999887  55443

>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis}

Probab=100.00  E-value=3.1e-36  Score=285.24  Aligned_cols=218  Identities=11%  Similarity=0.020  Sum_probs=168.5

Q ss_pred             CCccccccccccCCCeEEEEeCCCCCCCchhhHHHHHH---HHhchHh-cCCccEEEeCCChHHHHHHHHHH-hcCCCeE
Q psy5622          21 WFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYA---LLMLSED-QKKKGVISASLGNHAQAMCYHGS-RLNIPVT   95 (269)
Q Consensus        21 ~TPl~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~---l~~~~~~-~~~~~vv~~SsGN~g~alA~~a~-~~G~~~~   95 (269)
                      .|||+++.  +.-+.++|+|.|++|||||||||++..+   +.++.++ +...+|+++||||||.|++++++ +.|++|+
T Consensus       102 i~Pl~~l~--~~~~~~l~vkee~~~PTgSFKDRga~~~~~ll~~a~~~~g~~~~Vv~ASSGNtG~Aaa~a~~~~~Gi~~~  179 (487)
T 3v7n_A          102 ITPLTTLG--TENGAPVSLLELSNGPTLAFKDMAMQLLGNLFEYTLAKHGETLNILGATSGDTGSAAEYAMRGKEGVRVF  179 (487)
T ss_dssp             SSCEEEEE--EETTEEEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHTTTCCEEEEEECSSHHHHHHHHHHTTCTTEEEE
T ss_pred             CceeEEec--CCCCcceeHHhhccCCcCcHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCChHHHHHHHHHHHhccCCeEE
Confidence            47888753  1001239999999999999999999998   7766433 34456999999999999777776 8999999


Q ss_pred             EEEcCC-CcHHHHHHHHHcCC---EEEEeCCCHHHHHHHHHHHHhh------hCCeeecCCCCCCccccCCCCcchhccc
Q psy5622          96 VVMPIV-APIMKIQACRRYGA---TVIVEGADMKEAKNIALKKGAE------LGLTYINGYLSSGLSVLGYDHPDIMAGQ  165 (269)
Q Consensus        96 ivvp~~-~~~~~~~~l~~~Ga---~v~~~~~~~~~~~~~a~~~~~~------~~~~~~~~~~~~~~~~~g~~n~~~~~g~  165 (269)
                      |++|++ +++.|+++|+.+|+   +++.++++++++.+.+++++++      .++.++|+           .||.+++|+
T Consensus       180 I~~P~~~~s~~k~~qm~~~Ga~nv~vv~v~G~fDda~~~vk~~~~d~~~~~~~~l~~vns-----------~Np~ri~gQ  248 (487)
T 3v7n_A          180 MLSPHKKMSAFQTAQMYSLQDPNIFNLAVNGVFDDCQDIVKAVSNDHAFKAQQKIGTVNS-----------INWARVVAQ  248 (487)
T ss_dssp             EEEETTCSCHHHHHHHHTCCCTTEEEEEEESCHHHHHHHHHHHHTCHHHHHHTTEECCST-----------TCHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHhcCCCcEEEEEECCCHHHHHHHHHHhhhchHHHhhcCeeeeCC-----------CCHHHHHhH
Confidence            999998 99999999999998   7888999999999999998773      45666776           489999999


Q ss_pred             hhHHHHHHhhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCc
Q psy5622         166 GTVGLEIVDQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQ  241 (269)
Q Consensus       166 ~t~~~EI~~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~  241 (269)
                      .+.++|+..|+.    .+|+|++|+|+||+++|++.+.+ +    |  .|..|+|+||+++ +++.++|+.|.+.+.+..
T Consensus       249 ~tyy~~~~~el~~~~~~~d~vvVP~GngG~i~g~~~A~~-m----G--lp~~rli~a~~~n-~~l~~~~~~G~~~~~~~~  320 (487)
T 3v7n_A          249 VVYYFKGYFAATRSNDERVSFTVPSGNFGNVCAGHIARM-M----G--LPIEKLVVATNEN-DVLDEFFRTGAYRVRSAQ  320 (487)
T ss_dssp             HHHHHHHHHHTCSSTTCCEEEEEGGGCHHHHHHHHHHHH-T----T--CCEEEEEEECTTC-HHHHHHHHHSEEEC----
T ss_pred             HHHHHHHHHHHHhcCCCCcEEEEecCchHHHHHHHHHHH-c----C--CCCceEEEEeCCC-cHHHHHHHcCCcccCCCC
Confidence            998888888873    59999999999999999986643 4    1  3567999999998 999999999987766667


Q ss_pred             ccc---cccccCCCCCHHHHHHH
Q psy5622         242 PTL---ADGLAVPLVGWNAFETA  261 (269)
Q Consensus       242 ~t~---a~gl~~~~~~~~~~~~~  261 (269)
                      +|+   +.+|++..|++  |+++
T Consensus       321 ~Ti~t~s~smdI~~psn--~er~  341 (487)
T 3v7n_A          321 DTYHTSSPSMDISKASN--FERF  341 (487)
T ss_dssp             --------------CHH--HHHH
T ss_pred             CccccCCchhccCCCcc--HHHH
Confidence            788   99999998876  5554

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.38  E-value=2  Score=32.62  Aligned_cols=100  Identities=11%  Similarity=0.122  Sum_probs=65.9

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYL  147 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  147 (269)
                      ..+++....|..|..+|...+..|++++++-.   ++.+.+.++..|..++..+....+..+.+                
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~---~~~~~~~~~~~g~~~i~gd~~~~~~l~~a----------------   67 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIET---SRTRVDELRERGVRAVLGNAANEEIMQLA----------------   67 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEES---CHHHHHHHHHTTCEEEESCTTSHHHHHHT----------------
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHcCCCEEECCCCCHHHHHhc----------------
Confidence            45677778899999999999999999888765   35666667777777655443222211100                


Q ss_pred             CCCccccCCCCcchhccchhHHHHHHhhcCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcC
Q psy5622         148 SSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVES  220 (269)
Q Consensus       148 ~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~  220 (269)
                                                 .+...|.++++++.-....-+....+.+       .|..++++-..
T Consensus        68 ---------------------------~i~~ad~vi~~~~~~~~n~~~~~~a~~~-------~~~~~iiar~~  106 (140)
T 3fwz_A           68 ---------------------------HLECAKWLILTIPNGYEAGEIVASARAK-------NPDIEIIARAH  106 (140)
T ss_dssp             ---------------------------TGGGCSEEEECCSCHHHHHHHHHHHHHH-------CSSSEEEEEES
T ss_pred             ---------------------------CcccCCEEEEECCChHHHHHHHHHHHHH-------CCCCeEEEEEC
Confidence                                       1123678888888755444455567777       78888777543

>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2

Probab=91.15  E-value=1.2  Score=36.52  Aligned_cols=130  Identities=18%  Similarity=0.137  Sum_probs=75.2

Q ss_pred             CCCCchhhHHHHHHHHhchHhcCCcc-EEEeCCChHHHHHHHHHHhcCCCeEEEE-------cC--CCcHHHHHHHHHcC
Q psy5622          45 QVTGSFKERGACYALLMLSEDQKKKG-VISASLGNHAQAMCYHGSRLNIPVTVVM-------PI--VAPIMKIQACRRYG  114 (269)
Q Consensus        45 nptGS~K~R~a~~~l~~~~~~~~~~~-vv~~SsGN~g~alA~~a~~~G~~~~ivv-------p~--~~~~~~~~~l~~~G  114 (269)
                      +|+--+=+......+.++. +.+-+. ||.+++|.++..++-..  .|+++++|.       |.  ..+++.++.|+..|
T Consensus        22 ~~G~eNT~~tl~la~era~-e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G   98 (201)
T 1vp8_A           22 KPGRENTEETLRLAVERAK-ELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRG   98 (201)
T ss_dssp             SCSGGGHHHHHHHHHHHHH-HHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTT
T ss_pred             CCCcccHHHHHHHHHHHHH-HcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCC
Confidence            4555566666777777764 444444 55566799886655533  688888887       32  46889999999999


Q ss_pred             CEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcch-hccch-hHHHHHHhhc---C--CCCEEEEecC
Q psy5622         115 ATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDI-MAGQG-TVGLEIVDQV---A--NIDAIVVPVG  187 (269)
Q Consensus       115 a~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~-~~g~~-t~~~EI~~ql---~--~~d~vv~p~G  187 (269)
                      .+|+...--+.... +  .+.++.|.+|....         -.+.++ +.|+. -.+.||.-.-   +  ..+.|+..-|
T Consensus        99 ~~V~t~tH~lsgve-R--~is~kfGG~~p~ei---------iA~tLR~~fgqG~KV~vEi~lMAaDAGlIp~eeVIAiGG  166 (201)
T 1vp8_A           99 AKIVRQSHILSGLE-R--SISRKLGGVSRTEA---------IAEALRSLFGHGLKVCVEITIMAADSGAIPIEEVVAVGG  166 (201)
T ss_dssp             CEEEECCCTTTTTH-H--HHHHHTCCCCHHHH---------HHHHHHHHHCHHHHHHHHHHHHHHHTTSSCSSCEEEEEC
T ss_pred             CEEEEEeccccchh-H--HHHHhcCCCCHHHH---------HHHHHHHHhcCCceEEEEEeeeecccCCCCcceEEEEcc
Confidence            99997652222111 1  13445554443220         124444 44554 3556664332   2  3455555555


Q ss_pred             cc
Q psy5622         188 GG  189 (269)
Q Consensus       188 ~G  189 (269)
                      ||
T Consensus       167 T~  168 (201)
T 1vp8_A          167 RS  168 (201)
T ss_dssp             SS
T ss_pred             cc
Confidence            54

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=90.42  E-value=2.1  Score=36.53  Aligned_cols=78  Identities=13%  Similarity=0.048  Sum_probs=54.0

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCC-CcHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhCC--e
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIV-APIMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAELGL--T  141 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~~--~  141 (269)
                      +..+|+..++--|+++|..-++.|.+++++-... .-+.-.+.++..|.+++.+.   .+.++..+..++..++.|.  .
T Consensus         8 KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDi   87 (254)
T 4fn4_A            8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDV   87 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4568888888889999999999999876654321 11233456788898887554   5667777777777777763  4


Q ss_pred             eecC
Q psy5622         142 YING  145 (269)
Q Consensus       142 ~~~~  145 (269)
                      .+|.
T Consensus        88 LVNN   91 (254)
T 4fn4_A           88 LCNN   91 (254)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            4544

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=89.61  E-value=2.8  Score=35.70  Aligned_cols=78  Identities=15%  Similarity=-0.037  Sum_probs=51.8

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCC-CcHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhCC--e
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIV-APIMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAELGL--T  141 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~~--~  141 (269)
                      +..+|+..++--|.++|....+.|.++++.-... .-....+.++..|.+++.+.   .+.++..+..++..++.+.  .
T Consensus        10 KvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDi   89 (255)
T 4g81_D           10 KTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDI   89 (255)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCCCE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcE
Confidence            4567888888889999999999998866542211 11233456777888888765   4556666666777776663  4


Q ss_pred             eecC
Q psy5622         142 YING  145 (269)
Q Consensus       142 ~~~~  145 (269)
                      .+|.
T Consensus        90 LVNN   93 (255)
T 4g81_D           90 LINN   93 (255)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            4444

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=88.49  E-value=7.2  Score=35.60  Aligned_cols=100  Identities=13%  Similarity=0.039  Sum_probs=66.9

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYL  147 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  147 (269)
                      ..+|+....|..|..+|......|++++++-.   ++.+++.++..|.+++.-+..-.+..+.+                
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~---d~~~v~~~~~~g~~vi~GDat~~~~L~~a----------------   64 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDH---DPDHIETLRKFGMKVFYGDATRMDLLESA----------------   64 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEEC---CHHHHHHHHHTTCCCEESCTTCHHHHHHT----------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHhCCCeEEEcCCCCHHHHHhc----------------
Confidence            34678888899999999999999999888744   45677777777776655543222221111                


Q ss_pred             CCCccccCCCCcchhccchhHHHHHHhhcCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcC
Q psy5622         148 SSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVES  220 (269)
Q Consensus       148 ~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~  220 (269)
                                                 .+.+.|.||++++.-..-.-+....|.+       +|+++|++-..
T Consensus        65 ---------------------------gi~~A~~viv~~~~~~~n~~i~~~ar~~-------~p~~~Iiara~  103 (413)
T 3l9w_A           65 ---------------------------GAAKAEVLINAIDDPQTNLQLTEMVKEH-------FPHLQIIARAR  103 (413)
T ss_dssp             ---------------------------TTTTCSEEEECCSSHHHHHHHHHHHHHH-------CTTCEEEEEES
T ss_pred             ---------------------------CCCccCEEEECCCChHHHHHHHHHHHHh-------CCCCeEEEEEC
Confidence                                       0124577888877766556666777777       77777776443

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=87.38  E-value=5.5  Score=35.42  Aligned_cols=50  Identities=8%  Similarity=-0.083  Sum_probs=37.4

Q ss_pred             CccEEE-eCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622          68 KKGVIS-ASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG  121 (269)
Q Consensus        68 ~~~vv~-~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~  121 (269)
                      .++|+. ..+|..|.+.+..|+.+|.+++++.    ++.|++.++.+||+.++..
T Consensus       165 g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~----~~~~~~~~~~lGa~~vi~~  215 (371)
T 3gqv_A          165 PVYVLVYGGSTATATVTMQMLRLSGYIPIATC----SPHNFDLAKSRGAEEVFDY  215 (371)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE----CGGGHHHHHHTTCSEEEET
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe----CHHHHHHHHHcCCcEEEEC
Confidence            345544 5559999999999999999876654    3567888999999765543

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=86.96  E-value=6.4  Score=35.13  Aligned_cols=50  Identities=10%  Similarity=0.100  Sum_probs=38.0

Q ss_pred             Ccc-EEEe-CCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622          68 KKG-VISA-SLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE  120 (269)
Q Consensus        68 ~~~-vv~~-SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~  120 (269)
                      .++ +|.. .+|..|.+.+..|+.+|.+++++..   ++.|++.++.+|++.+..
T Consensus       171 g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~~~~  222 (379)
T 3iup_A          171 GHSALVHTAAASNLGQMLNQICLKDGIKLVNIVR---KQEQADLLKAQGAVHVCN  222 (379)
T ss_dssp             TCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEES---SHHHHHHHHHTTCSCEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHhCCCcEEEe
Confidence            344 4443 7899999999999999998776654   577888899999975543

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=86.91  E-value=4.9  Score=34.02  Aligned_cols=72  Identities=10%  Similarity=-0.010  Sum_probs=44.7

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCC-cHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVA-PIMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..+|--|.++|....+.|.+++++-.... .....+.++..|.++..+.   .+.++..+..+++.++.+
T Consensus        27 k~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  102 (271)
T 4ibo_A           27 RTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGI  102 (271)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence            45678888888999999998888987655432211 1122345566677776654   344555555555555544

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=85.84  E-value=2.3  Score=37.82  Aligned_cols=50  Identities=16%  Similarity=0.042  Sum_probs=38.8

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE  120 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~  120 (269)
                      .++|+...+|..|.+.+..|+.+|.+++++..   ++.|++.++.+|++.+..
T Consensus       190 g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~vi~  239 (363)
T 3uog_A          190 GDRVVVQGTGGVALFGLQIAKATGAEVIVTSS---SREKLDRAFALGADHGIN  239 (363)
T ss_dssp             TCEEEEESSBHHHHHHHHHHHHTTCEEEEEES---CHHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEec---CchhHHHHHHcCCCEEEc
Confidence            45555555899999999999999998766544   567888899999976554

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=85.69  E-value=6.5  Score=32.59  Aligned_cols=72  Identities=18%  Similarity=0.087  Sum_probs=44.0

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..+|.-|.++|......|.+++++...... +...+.++..|.++..+  + .+.++..+...+..++.+
T Consensus         8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   83 (247)
T 2jah_A            8 KVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALG   83 (247)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            456888899999999999988899987776543211 11223444556666544  3 344454445555544443

>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*

Probab=85.08  E-value=14  Score=30.16  Aligned_cols=49  Identities=14%  Similarity=0.085  Sum_probs=33.9

Q ss_pred             hHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCC
Q psy5622         167 TVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESD  221 (269)
Q Consensus       167 t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~  221 (269)
                      ....+++++-+ .||+||+.  +...+.|+..++++.    |.+..++.|+|.+-.
T Consensus       168 ~~~~~~l~~~~~~~~ai~~~--~d~~a~g~~~al~~~----g~vp~di~vvg~d~~  217 (272)
T 3o74_A          168 RLMQQLIDDLGGLPDALVTT--SYVLLQGVFDTLQAR----PVDSRQLQLGTFGDN  217 (272)
T ss_dssp             HHHHHHHHHHTSCCSEEEES--SHHHHHHHHHHHHTS----CGGGCCCEEEEESCC
T ss_pred             HHHHHHHhcCCCCCcEEEEe--CchHHHHHHHHHHHc----CCCccceEEEEeCCh
Confidence            44455555556 69999874  567778888888766    332247899998754

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=85.07  E-value=4  Score=34.77  Aligned_cols=72  Identities=10%  Similarity=0.009  Sum_probs=53.6

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..++--|.++|...++.|.+++++-.........+.++..|.++..+  + .+.++..+...+..++.|
T Consensus         8 KvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G   82 (258)
T 4gkb_A            8 KVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFG   82 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            45688888888899999999999999888776555555666777777766654  4 566676777777777766

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=84.93  E-value=12  Score=29.20  Aligned_cols=51  Identities=14%  Similarity=-0.015  Sum_probs=37.0

Q ss_pred             CccEEEeCCChHHHHHHHHHHhc-CCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRL-NIPVTVVMPIVAPIMKIQACRRYGATVIVEG  121 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~-G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~  121 (269)
                      ..+++....|..|..+|...... |.+++++-.   ++.+.+.++..|.+++..+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~---~~~~~~~~~~~g~~~~~gd   90 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEI---REEAAQQHRSEGRNVISGD   90 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEES---CHHHHHHHHHTTCCEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEEC---CHHHHHHHHHCCCCEEEcC
Confidence            44666667899999999999888 998887754   3456666666676655433

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=84.03  E-value=4.8  Score=30.86  Aligned_cols=51  Identities=16%  Similarity=0.120  Sum_probs=34.2

Q ss_pred             hcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHH-HcCCEEE
Q psy5622          65 DQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACR-RYGATVI  118 (269)
Q Consensus        65 ~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~-~~Ga~v~  118 (269)
                      ......++....|..|..+|...+..|.+++++-+.   +.+.+.++ ..|..++
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~---~~~~~~~~~~~g~~~~   67 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKN---EYAFHRLNSEFSGFTV   67 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC---GGGGGGSCTTCCSEEE
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECC---HHHHHHHHhcCCCcEE
Confidence            334556777778999999999999999987776543   23333344 4566543

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=83.47  E-value=7  Score=34.04  Aligned_cols=53  Identities=17%  Similarity=0.198  Sum_probs=42.0

Q ss_pred             CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622          67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG  121 (269)
Q Consensus        67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~  121 (269)
                      ..++|+....|.-|...+..|+.+|.+.++.+..  ++.|++.++.+||+.+...
T Consensus       160 ~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~--~~~k~~~a~~lGa~~~i~~  212 (346)
T 4a2c_A          160 ENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI--SSEKLALAKSFGAMQTFNS  212 (346)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHHTTCSEEEET
T ss_pred             CCCEEEEECCCCcchHHHHHHHHcCCcEEEEEec--hHHHHHHHHHcCCeEEEeC
Confidence            3556666677889999999999999998777643  5678899999999877654

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=83.44  E-value=8.7  Score=33.54  Aligned_cols=64  Identities=13%  Similarity=0.017  Sum_probs=43.1

Q ss_pred             HHHHHHhc-hHhcCCccEEEeCCChHHHHHHHHHHhc-CCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622          55 ACYALLML-SEDQKKKGVISASLGNHAQAMCYHGSRL-NIPVTVVMPIVAPIMKIQACRRYGATVIVEG  121 (269)
Q Consensus        55 a~~~l~~~-~~~~~~~~vv~~SsGN~g~alA~~a~~~-G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~  121 (269)
                      |++.+.++ ..-...++|+...+|..|.+.+..|+.+ |.+++++..   ++.|++.++.+||+.+...
T Consensus       158 a~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~---~~~~~~~~~~lGa~~~i~~  223 (345)
T 3jv7_A          158 PYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL---DDDRLALAREVGADAAVKS  223 (345)
T ss_dssp             HHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES---CHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHcCCCEEEcC
Confidence            44555542 1223455666656699999999999988 566555433   5678899999999876544

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=83.39  E-value=8.3  Score=32.16  Aligned_cols=72  Identities=10%  Similarity=0.013  Sum_probs=43.9

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..+|.-|.++|......|.+++++...... +.....++..|.++..+  + .+.++..+...+..++.+
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (262)
T 1zem_A            8 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFG   83 (262)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            456888889999999999999999987776543211 11223444456666544  3 344454455555555443

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=83.06  E-value=3.4  Score=36.33  Aligned_cols=63  Identities=13%  Similarity=0.120  Sum_probs=42.2

Q ss_pred             HHHHHHhchHhcCCcc-EEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622          55 ACYALLMLSEDQKKKG-VISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG  121 (269)
Q Consensus        55 a~~~l~~~~~~~~~~~-vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~  121 (269)
                      |+.++..+. ..+.++ +|.+.+|..|.+++..|+.+|.+++++..   ++.|++.++.+|++.+...
T Consensus       153 a~~~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~~~  216 (349)
T 3pi7_A          153 AIAMFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVR---RDEQIALLKDIGAAHVLNE  216 (349)
T ss_dssp             HHHHHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEES---CGGGHHHHHHHTCSEEEET
T ss_pred             HHHHHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEEEEC
Confidence            344444433 223234 45568899999999999999998766654   3456777788999865544

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=82.79  E-value=9.7  Score=31.93  Aligned_cols=71  Identities=15%  Similarity=0.082  Sum_probs=43.5

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhh
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAEL  138 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~  138 (269)
                      +..+|+..+|--|.++|......|.+++++...... +...+.++..|.++..+.   .+.++..+...++.++.
T Consensus        32 k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  106 (272)
T 1yb1_A           32 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI  106 (272)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            456888889999999999998999987776543211 112234555566665443   34444444444444443

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=82.52  E-value=9.4  Score=32.71  Aligned_cols=72  Identities=13%  Similarity=0.027  Sum_probs=45.8

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..+|--|.++|....+.|.+++++...... ....+.++..|.++..+  + .+.++..+..++..++.+
T Consensus        32 k~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (301)
T 3tjr_A           32 RAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLG  107 (301)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence            456888888999999999999999987766543211 12234455667666544  3 445555555555555543

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=82.45  E-value=7.6  Score=32.58  Aligned_cols=70  Identities=7%  Similarity=-0.055  Sum_probs=50.5

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG-ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~-~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..+|--|.++|......|.+++++......  ..+.++..++..+.++ .+.++..+...++.++.+
T Consensus        28 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   98 (260)
T 3gem_A           28 APILITGASQRVGLHCALRLLEHGHRVIISYRTEHA--SVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTS   98 (260)
T ss_dssp             CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCH--HHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHH--HHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcC
Confidence            456888888999999999999999998776654332  2445666788887777 566666666666666654

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=82.43  E-value=11  Score=31.56  Aligned_cols=72  Identities=11%  Similarity=0.046  Sum_probs=42.4

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHc--CCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRY--GATVIVE--G-ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~--Ga~v~~~--~-~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..+|.-|.++|....+.|.+++++...... ....+.++..  |.++..+  + .+.++..+...+..++.+
T Consensus        14 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   91 (267)
T 1iy8_A           14 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   91 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            456888889999999999988899987776543211 1112233333  5555544  3 344444445555555444

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=82.42  E-value=7.3  Score=32.68  Aligned_cols=72  Identities=13%  Similarity=0.130  Sum_probs=42.0

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHH-cCCEEEEeC---CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRR-YGATVIVEG---ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~-~Ga~v~~~~---~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..+|--|.++|....+.|.+++++-..... ....+.++. .|.++..+.   .+.++..+..+++.++.+
T Consensus        21 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   97 (266)
T 4egf_A           21 KRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFG   97 (266)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            445778888889999999988899987665543211 111222332 566665443   344444455555555443

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=82.15  E-value=11  Score=31.14  Aligned_cols=71  Identities=10%  Similarity=0.057  Sum_probs=43.4

Q ss_pred             ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622          69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~  139 (269)
                      ..+|+..+|.-|.++|......|.+++++...... +...+.++..|.++..+  + .+.++..+...+..++.+
T Consensus         4 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            4 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLG   78 (256)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            45888888999999999998999987776543211 11223445556666544  3 344454455555555443

>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2

Probab=82.15  E-value=3.6  Score=33.85  Aligned_cols=73  Identities=12%  Similarity=-0.061  Sum_probs=48.8

Q ss_pred             CCCCchhhHHHHHHHHhchHhcCCcc-EEEeCCChHHHHHHHHHHhcCCCeEEEE-------cC--CCcHHHHHHHHHcC
Q psy5622          45 QVTGSFKERGACYALLMLSEDQKKKG-VISASLGNHAQAMCYHGSRLNIPVTVVM-------PI--VAPIMKIQACRRYG  114 (269)
Q Consensus        45 nptGS~K~R~a~~~l~~~~~~~~~~~-vv~~SsGN~g~alA~~a~~~G~~~~ivv-------p~--~~~~~~~~~l~~~G  114 (269)
                      +|+--+=+..+...+.++. +.+-+. ||.+++|.++..++-..  .| ++++|.       |.  ..+++.++.|+..|
T Consensus        30 ~~G~eNT~~tl~la~era~-e~~Ik~iVVASssG~TA~k~~e~~--~~-~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G  105 (206)
T 1t57_A           30 EPGKENTERVLELVGERAD-QLGIRNFVVASVSGETALRLSEMV--EG-NIVSVTHHAGFREKGQLELEDEARDALLERG  105 (206)
T ss_dssp             SCSGGGHHHHHHHHHHHHH-HHTCCEEEEECSSSHHHHHHHTTC--CS-EEEEECCCTTSSSTTCCSSCHHHHHHHHHHT
T ss_pred             CCCcccHHHHHHHHHHHHH-HcCCCEEEEEeCCCHHHHHHHHHc--cC-CEEEEeCcCCCCCCCCCcCCHHHHHHHHhCC
Confidence            4555566677777777764 444444 55566698876554422  45 666665       32  36789999999999


Q ss_pred             CEEEEeC
Q psy5622         115 ATVIVEG  121 (269)
Q Consensus       115 a~v~~~~  121 (269)
                      .+|+...
T Consensus       106 ~~V~t~t  112 (206)
T 1t57_A          106 VNVYAGS  112 (206)
T ss_dssp             CEEECCS
T ss_pred             CEEEEee
Confidence            9998765

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=82.06  E-value=11  Score=31.88  Aligned_cols=72  Identities=8%  Similarity=0.049  Sum_probs=44.3

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..+|.-|.++|......|.+++++...... +...+.++..|.++..+  + .+.++..+...+..++.+
T Consensus        23 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   98 (277)
T 2rhc_B           23 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYG   98 (277)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            456888889999999999999999987776543211 11233455557666544  3 344444444555544443

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=82.05  E-value=6.5  Score=32.66  Aligned_cols=71  Identities=11%  Similarity=0.092  Sum_probs=47.9

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..+|.-|.++|....+.|.+++++..... ......++..|.++..+.   .+.++..+...+..++.+
T Consensus         5 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (255)
T 2q2v_A            5 KTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP-APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFG   78 (255)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC-HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch-HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            34678888899999999999899998776544333 444566666787776654   344555555555555544

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=81.97  E-value=7.8  Score=31.80  Aligned_cols=54  Identities=9%  Similarity=0.038  Sum_probs=35.2

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEeC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVEG  121 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~  121 (269)
                      +..+|+..+|.-|.+++......|.+++++...... ....+.++..|.++..+.
T Consensus        12 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~   66 (255)
T 1fmc_A           12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACR   66 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEE
Confidence            345788888999999999988889887776543211 112334555566665443

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=81.33  E-value=12  Score=31.41  Aligned_cols=72  Identities=11%  Similarity=0.144  Sum_probs=42.8

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHH-HHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQAC-RRYGATVIVE--G-ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l-~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..+|.-|.++|....+.|.+++++...... ....+.+ +..|.++..+  + .+.++..+...+..++.+
T Consensus        22 k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (267)
T 1vl8_A           22 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFG   98 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            446888889999999999999999987776543211 1112223 3446666544  3 344444444455544443

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=81.31  E-value=11  Score=32.03  Aligned_cols=72  Identities=11%  Similarity=-0.004  Sum_probs=42.2

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCC-cHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVA-PIMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..+|--|.++|....+.|.+++++-.... .....+.++..|.++..+.   .+.++..+...+..++.+
T Consensus         9 k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   84 (280)
T 3tox_A            9 KIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFG   84 (280)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            44578888888999999998888988655432211 1112233444566666554   344444445555555444

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=81.27  E-value=12  Score=31.02  Aligned_cols=72  Identities=15%  Similarity=0.121  Sum_probs=41.4

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHc-CCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRY-GATVIVE--G-ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~-Ga~v~~~--~-~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..+|.-|.++|......|.+++++...... +...+.++.. |.++..+  + .+.++..+...+..++.+
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (263)
T 3ai3_A            8 KVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFG   84 (263)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            346888889999999999988899987776543211 1111223322 6555544  3 344444444444444433

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=81.23  E-value=10  Score=31.44  Aligned_cols=72  Identities=13%  Similarity=0.037  Sum_probs=43.1

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..+|.-|.++|......|.+++++...... +.....++..|.++..+  + .+.++..+...+..++.+
T Consensus        15 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   90 (260)
T 2zat_A           15 KVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHG   90 (260)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            456888888999999999988999987776543211 11233445556665543  3 344444444444444443

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=81.09  E-value=13  Score=31.19  Aligned_cols=71  Identities=10%  Similarity=-0.008  Sum_probs=43.5

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhh
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAEL  138 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~  138 (269)
                      +..+|+..+|--|.++|......|.+++++...... ....+.++..|.++..+  + .+.++..+..++..++.
T Consensus        22 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   96 (273)
T 1ae1_A           22 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF   96 (273)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            456888889999999999999999987766543211 11223445556666544  3 34444444445544443

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=81.07  E-value=6.2  Score=32.16  Aligned_cols=71  Identities=13%  Similarity=0.101  Sum_probs=41.8

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcH-HHHHHH-HHcCCEEEEeC---CCHHHHHHHHHHHHhhh
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPI-MKIQAC-RRYGATVIVEG---ADMKEAKNIALKKGAEL  138 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~l-~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~  138 (269)
                      +..+|+..+|.-|.++|......|.++++........ ...+.+ +..|.++..+.   .+.++..+..+++.++.
T Consensus         3 k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (235)
T 3l77_A            3 KVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERF   78 (235)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence            3457888889999999999999999876655432111 112222 24577776543   34444444444444443

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=81.04  E-value=9.9  Score=31.31  Aligned_cols=72  Identities=13%  Similarity=0.166  Sum_probs=44.2

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..+|--|.++|....+.|.+++++...+..  +...+.++..|.++..+  + .+.++..+..++..++.+
T Consensus         5 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (246)
T 2uvd_A            5 KVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFG   81 (246)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            345788888999999999988899988776652211  11233455567666544  3 344454455555555443

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=80.93  E-value=17  Score=30.75  Aligned_cols=72  Identities=15%  Similarity=0.074  Sum_probs=44.6

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..+|--|.++|......|.+++++...+..  ......++..|.++..+.   .+.++..+..+++.++.+
T Consensus        30 k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  106 (280)
T 4da9_A           30 PVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFG  106 (280)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHS
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            456888888999999999999999988776643321  223345556676665543   333444444444444433

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=80.86  E-value=11  Score=32.03  Aligned_cols=72  Identities=11%  Similarity=0.016  Sum_probs=45.6

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..+|--|.++|....+.|.+++++-..... ......++..|.++..+.   .+.++..+...++.++.+
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (283)
T 3v8b_A           29 PVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFG  104 (283)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            456888888999999999988999987776543211 122334445566666543   345555555555555544

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=80.85  E-value=13  Score=32.55  Aligned_cols=109  Identities=6%  Similarity=-0.063  Sum_probs=65.8

Q ss_pred             cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCC-C----------------cHHHHHHHHHcCCEEEEeCCCHHHHHHHHH
Q psy5622          70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIV-A----------------PIMKIQACRRYGATVIVEGADMKEAKNIAL  132 (269)
Q Consensus        70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~-~----------------~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~  132 (269)
                      +|..-.+|-.|..++.+|+++|++++++-+.. +                +..... ....+.+++....+.......+.
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~~~~~~~aD~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~~~~~~~   81 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQALIRNYADEFYCFDVIKEPEKLL-ELSKRVDAVLPVNENLACIEFLN   81 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTTSSEEEECCTTTCHHHHH-HHHTSSSEEEECCCCHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCChhHhhCCEEEECCCCcCHHHHH-HHhcCCCEEEECCCChhHHHHHH
Confidence            56666788999999999999999999875431 1                112222 22346666655533333344555


Q ss_pred             HHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcC---------CCCEEEEecCcch
Q psy5622         133 KKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA---------NIDAIVVPVGGGG  190 (269)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~---------~~d~vv~p~G~Gg  190 (269)
                      +++++.+.. +.+          ........+-+....+++++.+         .+-.|+=|..+||
T Consensus        82 ~~~~~~~~~-~g~----------~~~a~~~~~dK~~~k~~l~~~gip~~~~~~ig~P~vvKp~~g~g  137 (363)
T 4ffl_A           82 SIKEKFSCP-VLF----------DFEAYRISRDKKKSKDYFKSIGVPTPQDRPSKPPYFVKPPCESS  137 (363)
T ss_dssp             HHGGGCSSC-BCC----------CHHHHHHHTSHHHHHHHHHHTTCCCCCBSCSSSCEEEECSSCCT
T ss_pred             HHHHHCCCc-cCC----------CHHHHHHhhCHHHHHHHHHhcCCCCCCceecCCCEEEEECCCCC
Confidence            566655432 111          1122356778888999999875         2346777775544

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=80.83  E-value=11  Score=31.64  Aligned_cols=72  Identities=11%  Similarity=0.081  Sum_probs=50.9

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc--------HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHh
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--------IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGA  136 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--------~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~  136 (269)
                      +..+|+..+|--|.++|....+.|.+++++......        ......++..|.++..+.   .+.++..+..+++.+
T Consensus         7 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   86 (274)
T 3e03_A            7 KTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAATVD   86 (274)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            456888888999999999999999987777644321        334455667788887654   455666666676666


Q ss_pred             hhC
Q psy5622         137 ELG  139 (269)
Q Consensus       137 ~~~  139 (269)
                      +.+
T Consensus        87 ~~g   89 (274)
T 3e03_A           87 TFG   89 (274)
T ss_dssp             HHS
T ss_pred             HcC
Confidence            654

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=80.77  E-value=12  Score=31.66  Aligned_cols=71  Identities=13%  Similarity=-0.016  Sum_probs=41.1

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHH-cCCEEEEeC---CCHHHHHHHHHHHHhhh
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRR-YGATVIVEG---ADMKEAKNIALKKGAEL  138 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~-~Ga~v~~~~---~~~~~~~~~a~~~~~~~  138 (269)
                      +..+|+..+|.-|.++|......|.+++++...... ....+.++. +|.++..+.   .+.++..+...+..++.
T Consensus        27 k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  102 (302)
T 1w6u_A           27 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVA  102 (302)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHc
Confidence            346888899999999999998999987776543211 111222322 265555443   34444444444444443

>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}

Probab=80.52  E-value=23  Score=29.26  Aligned_cols=47  Identities=15%  Similarity=0.029  Sum_probs=31.2

Q ss_pred             HHHHHhhcCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCC-CCcEEEEEcCC
Q psy5622         169 GLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVG-LEIVDQGVESD  221 (269)
Q Consensus       169 ~~EI~~ql~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~-~~~~vigVe~~  221 (269)
                      ..+++++-+.||+||+.  +...+.|+..++++.    |..- .++.|+|.+-.
T Consensus       183 ~~~~l~~~~~~~ai~~~--~d~~a~g~~~al~~~----g~~vP~di~vig~d~~  230 (292)
T 3k4h_A          183 VEELMGLQQPPTAIMAT--DDLIGLGVLSALSKK----GFVVPKDVSIVSFNNA  230 (292)
T ss_dssp             HHHHHTSSSCCSEEEES--SHHHHHHHHHHHHHT----TCCTTTTCEEEEESCC
T ss_pred             HHHHHcCCCCCcEEEEc--ChHHHHHHHHHHHHh----CCCCCCeEEEEEecCc
Confidence            34444443478999865  566777999998877    2221 36889998743

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=80.14  E-value=6.9  Score=34.28  Aligned_cols=48  Identities=17%  Similarity=0.061  Sum_probs=37.1

Q ss_pred             CccEEE-eCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622          68 KKGVIS-ASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV  119 (269)
Q Consensus        68 ~~~vv~-~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~  119 (269)
                      .++|+. ..+|..|.+++..|+..|.+++++ .   ++.+++.++.+|++.+.
T Consensus       151 g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~---~~~~~~~~~~lGa~~i~  199 (343)
T 3gaz_A          151 GQTVLIQGGGGGVGHVAIQIALARGARVFAT-A---RGSDLEYVRDLGATPID  199 (343)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-E---CHHHHHHHHHHTSEEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-e---CHHHHHHHHHcCCCEec
Confidence            445555 448999999999999999976655 2   46678889999999833

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d1tdja1	331	c.79.1.1 (A:5-335) Threonine deaminase {Escherichi	7e-34
d1v71a1	318	c.79.1.1 (A:6-323) Hypothetical protein C320.14 (S	2e-27
d1o58a_	293	c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei	1e-21
d1ve1a1	302	c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (C	8e-21
d1jbqa_	355	c.79.1.1 (A:) Cystathionine beta-synthase {Human (	9e-21
d1z7wa1	320	c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (C	5e-18
d1ve5a1	310	c.79.1.1 (A:2-311) Threonine deaminase {Thermus th	1e-17
d1fcja_	302	c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei	1e-15
d1p5ja_	319	c.79.1.1 (A:) L-serine dehydratase {Human (Homo sa	4e-15
d1wkva1	382	c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (C	5e-15
d1qopb_	390	c.79.1.1 (B:) Tryptophan synthase, beta-subunit {S	9e-15
d2bhsa1	292	c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (C	1e-13
d1v7ca_	351	c.79.1.1 (A:) Threonine synthase {Thermus thermoph	1e-13
d1e5xa_	477	c.79.1.1 (A:) Threonine synthase {Mouse-ear cress	2e-13
d1y7la1	310	c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (C	2e-12
d1tyza_	338	c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de	2e-12
d1v8za1	386	c.79.1.1 (A:1-386) Tryptophan synthase, beta-subun	3e-12
d1f2da_	341	c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de	6e-12
d1j0aa_	325	c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de	4e-10

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Length = 331

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

 Score =  123 bits (308), Expect = 7e-34
 Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 17/242 (7%)

Query: 28  HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHG 87
            LS      I +K++  Q   SFK RGA   +  L+E+QK  GVI+AS GNHAQ + +  
Sbjct: 35  KLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSS 94

Query: 88  SRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYL 147
           +RL +   +VMP     +K+ A R +G  V++ GA+  EAK  A++   + G T++    
Sbjct: 95  ARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVP--- 151

Query: 148 SSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQG 207
                   +DHP ++AGQGT+ LE++ Q A++D + VPVGGGGL AGVA     +M    
Sbjct: 152 -------PFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMP--- 201

Query: 208 TVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLIDK 267
               +I    VE++  A    A+  G P  +      A+G+AV  +G   F      +D 
Sbjct: 202 ----QIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDD 257

Query: 268 MF 269
           + 
Sbjct: 258 II 259

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 318

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  106 bits (264), Expect = 2e-27
 Identities = 77/243 (31%), Positives = 116/243 (47%), Gaps = 17/243 (6%)

Query: 27  SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYH 86
           S +++    E+F K + FQ  G+FK RGA  AL  L+E Q+K GV++ S GNHAQA+   
Sbjct: 28  STVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLTFSSGNHAQAIALS 87

Query: 87  GSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGY 146
              L IP  ++MP+ AP  K+ A + YG  VI+      + + +A +     GLT I   
Sbjct: 88  AKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRYKDDREKMAKEISEREGLTIIP-- 145

Query: 147 LSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQ 206
                    YDHP ++AGQGT   E+ ++V  +DA+ V +GGGGL++G A          
Sbjct: 146 --------PYDHPHVLAGQGTAAKELFEEVGPLDALFVCLGGGGLLSGSALAARHFAP-- 195

Query: 207 GTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFETAAPLID 266
                     GVE +       + + G    +    T+ADG     +G   F      +D
Sbjct: 196 -----NCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYTFSIIKEKVD 250

Query: 267 KMF 269
            + 
Sbjct: 251 DIL 253

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Length = 293

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

 Score = 89.4 bits (221), Expect = 1e-21
 Identities = 54/225 (24%), Positives = 90/225 (40%), Gaps = 28/225 (12%)

Query: 36  EIFLKKDFFQVTGSFKERGACYALLMLSED-QKKKGVISASLGNHAQAMCYHGSRLNIPV 94
            IFLK +     GS K+R A + +L   +    K G++  + GN   A+   G++    V
Sbjct: 22  RIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNGIVEPTSGNMGIAIAMIGAKRGHRV 81

Query: 95  TVVMPIVAPIMKIQACRRYGATVIVEGAD--MKEAKNIALKKGAELGLTYINGYLSSGLS 152
            + MP    + + +  +  GA +++   +  MK A   AL+   E G   +N +      
Sbjct: 82  ILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEISRETGAHMLNQF------ 135

Query: 153 VLGYDHPDIMAGQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGL 211
               +  ++ + Q T G EI+ Q+   IDA V  VG GG I+GV             +  
Sbjct: 136 ---ENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIV- 191

Query: 212 EIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN 256
                 VE  +    S     G+P   ++Q     G+    V   
Sbjct: 192 -----AVEPAKSPVLS----GGQPGKHAIQ-----GIGAGFVPKI 222

>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermus thermophilus [TaxId: 274]

 Score = 87.3 bits (215), Expect = 8e-21
 Identities = 34/176 (19%), Positives = 65/176 (36%), Gaps = 17/176 (9%)

Query: 27  SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSED-----QKKKGVISASLGNHAQ 81
           + + E    E+++K +     GS K+R A Y +    E         + ++  + GN   
Sbjct: 16  AKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGI 75

Query: 82  AMCYHGSRLNIPVTVVMPIVAPIMKIQACRRY--GATVIVEGADMKEAKNIALKKGAELG 139
            +    +     + + MP      + +  + +     +      M  A+  AL+   ELG
Sbjct: 76  GLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREEALRLKEELG 135

Query: 140 LTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV-ANIDAIVVPVGGGGLIAG 194
               + +          +  ++ A   T G E+ + +   IDA V   G GG I G
Sbjct: 136 AFMPDQF---------KNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITG 182

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.0 bits (217), Expect = 9e-21
 Identities = 36/177 (20%), Positives = 63/177 (35%), Gaps = 9/177 (5%)

Query: 27  SHLSELT--KMEIFLKKDFFQVTGSFKERGACYALLMLSED---QKKKGVISASLGNHAQ 81
           + + +    K E+  K +FF   GS K+R +   +     D   +    +I  + GN   
Sbjct: 51  NKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGI 110

Query: 82  AMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLT 141
            +    +       +VMP      K+   R  GA ++    + +     +    A     
Sbjct: 111 GLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKN 170

Query: 142 YINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAY 197
            I             +  + +A   T   EI+ Q    +D +V  VG GG I G+A 
Sbjct: 171 EIPNSHI---LDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIAR 224

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 320

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 79.9 bits (196), Expect = 5e-18
 Identities = 33/223 (14%), Positives = 66/223 (29%), Gaps = 28/223 (12%)

Query: 27  SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSED----QKKKGVISASLGNHAQA 82
           ++++E     +  K +  +   S K+R     +    +       +  +I  + GN    
Sbjct: 20  NNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVG 79

Query: 83  MCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV---EGADMKEAKNIALKKGAELG 139
           + +  +     + + MP      +      +G  +++                       
Sbjct: 80  LAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPN 139

Query: 140 LTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVAN-IDAIVVPVGGGGLIAGVAYD 198
              +  +          +  +      T G EI       ID  V  +G GG I G    
Sbjct: 140 GYMLQQF---------ENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKY 190

Query: 199 HPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQ 241
             +  A     G+E V+           S  +  GKP P  +Q
Sbjct: 191 LKEQNANVKLYGVEPVE-----------SAILSGGKPGPHKIQ 222

>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Length = 310

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Thermus thermophilus [TaxId: 274]

 Score = 78.9 bits (193), Expect = 1e-17
 Identities = 65/243 (26%), Positives = 96/243 (39%), Gaps = 17/243 (6%)

Query: 28  HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHG 87
            L  L    + LK +  Q TGSFK RGA          +  KG+++ S GNHAQ + Y  
Sbjct: 27  LLDGLLGKRLLLKAEHLQKTGSFKARGALS---KALALENPKGLLAVSSGNHAQGVAYAA 83

Query: 88  SRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYL 147
             L +   VVMP  A   K    R YGA V+  G   K  + +A     E G   I+   
Sbjct: 84  QVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVTAKNREEVARALQEETGYALIH--- 140

Query: 148 SSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQG 207
                   +D P ++AGQGT GLE++ Q   +      V       G+       +    
Sbjct: 141 -------PFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALS 193

Query: 208 TVGLEIVDQGVESDRCASFSTAIKHGKPTPVS-VQPTLADGLAVPLVGWNAFETAAPLID 266
              L +   GVE +       +++ G+   +     T ADG+    +G   F      +D
Sbjct: 194 PTTLVL---GVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLGERTFPILRERVD 250

Query: 267 KMF 269
            + 
Sbjct: 251 GIL 253

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

 Score = 73.0 bits (178), Expect = 1e-15
 Identities = 37/233 (15%), Positives = 69/233 (29%), Gaps = 17/233 (7%)

Query: 28  HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK-KKGVISASLGNHAQAMC-- 84
            L+ +    I  K +    + S K R     +    +    K GV      N    +   
Sbjct: 18  RLNRIGNGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVELVEPTNGNTGIALA 77

Query: 85  YHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYIN 144
           Y  +     +T+ MP    I + +  +  GA +++          I   +          
Sbjct: 78  YVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKY 137

Query: 145 GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV-ANIDAIVVPVGGGGLIAGVAYDHPDIM 203
             L         +  +    + T G EI +     +D  +  VG GG + GV        
Sbjct: 138 LLLQQ-----FSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIKGTK 192

Query: 204 AGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWN 256
                   +++   VE       + A+   +  P    P    G+    +  N
Sbjct: 193 GKT-----DLITVAVEPTDSPVIAQALAGEEIKPG---PHKIQGIGAGFIPGN 237

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 319

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (174), Expect = 4e-15
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 27  SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYH 86
             LS++    ++LK D  Q +GSFK RG  +     ++ Q     + +S GN   A  Y 
Sbjct: 14  MALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAK-QGCAHFVCSSAGNAGMAAAYA 72

Query: 87  GSRLNIPVTVVMPIVAPIMKIQACRRYGA 115
             +L +P T+V+P   P + I+  +  GA
Sbjct: 73  ARQLGVPATIVVPGTTPALTIERLKNEGA 101

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 382

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 71.7 bits (175), Expect = 5e-15
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 2/108 (1%)

Query: 26  KSHLSELTKMEIFLKKDFFQVTG-SFKERGACYALLMLSEDQKKKG-VISASLGNHAQAM 83
           +S L     + ++LK +++     S K+R A   +  LS   +K   V  A+  N   A+
Sbjct: 100 RSRLQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEKGSLVADATSSNFGVAL 159

Query: 84  CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIA 131
                       V +P  A        R  GA VIV+         + 
Sbjct: 160 SAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLP 207

>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 390

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

 Score = 71.0 bits (173), Expect = 9e-15
 Identities = 40/216 (18%), Positives = 78/216 (36%), Gaps = 10/216 (4%)

Query: 28  HLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHG 87
           +++  T+  ++LK++     G+ K        L+     K + +     G H  A     
Sbjct: 63  NITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALAS 122

Query: 88  SRLNIPVTVVMPIVAPIMK---IQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYIN 144
           + L +   + M       +   +   R  GA VI   +     K+   +   +   +Y  
Sbjct: 123 ALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYET 182

Query: 145 GYLSSGLSVLGYDHPDIMA-GQGTVGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYD 198
            +   G +   + +P I+   Q  +G E   Q+        DA++  VGGG    G+  D
Sbjct: 183 AHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFAD 242

Query: 199 HPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGK 234
                   G +G+E    G+E+    +     + G 
Sbjct: 243 F-INDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGI 277

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

 Score = 66.9 bits (162), Expect = 1e-13
 Identities = 40/190 (21%), Positives = 67/190 (35%), Gaps = 11/190 (5%)

Query: 27  SHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKG---VISASLGNHAQAM 83
             +      E++LK +     GS K+R A   ++   +  + K    +I A+ GN   A+
Sbjct: 16  QRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEATSGNTGIAL 75

Query: 84  CYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYI 143
               +     + ++MP      +  A R YGA +I+   +        L          +
Sbjct: 76  AMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLAL-------EM 128

Query: 144 NGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVAN-IDAIVVPVGGGGLIAGVAYDHPDI 202
                  L     +  +  A   T G EI  Q    I   V  +G  G I GV+    + 
Sbjct: 129 ANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQ 188

Query: 203 MAGQGTVGLE 212
                 VGL+
Sbjct: 189 SKPVTIVGLQ 198

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Length = 351

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

 Score = 67.4 bits (163), Expect = 1e-13
 Identities = 38/215 (17%), Positives = 69/215 (32%), Gaps = 11/215 (5%)

Query: 25  KKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMC 84
           K    +    + ++ K +    TGSFK+RG   A+     +   + V  AS GN A +  
Sbjct: 35  KGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKA-VEGGAQAVACASTGNTAASAA 93

Query: 85  YHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYIN 144
            + +R  I   VV+P     +   A        IV+     +      +K  E     + 
Sbjct: 94  AYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFDDALRLTQKLTEAFPVALV 153

Query: 145 GYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMA 204
                        +P  + GQ T+  E+VD++ +         G        +       
Sbjct: 154 ----------NSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNITAHWMGYKAYH 203

Query: 205 GQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVS 239
             G         G ++   A         +P  ++
Sbjct: 204 ALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLA 238

>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 477

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 67.3 bits (163), Expect = 2e-13
 Identities = 40/235 (17%), Positives = 71/235 (30%), Gaps = 15/235 (6%)

Query: 32  LTKMEIFLKKDFFQVTGSFKERGACYALLMLSE----DQKKKGVISASLGNHAQAMCYHG 87
           L   ++++K      TGSFK+ G    +  ++      +   GV  AS G+ + A+  + 
Sbjct: 135 LGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYC 194

Query: 88  SRLNIPVTVVMPI-VAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGY 146
           +   IP  V +P     + ++      GA V+    D      +  +  AEL +   N  
Sbjct: 195 ASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMKLIREITAELPIYLANSL 254

Query: 147 LSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQ 206
                        +         L+  D       IV     G + A           G 
Sbjct: 255 --------NSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGL 306

Query: 207 GTV--GLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAFE 259
                 +        +     + +  K  KP   S     A  +  P+    A  
Sbjct: 307 VDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIGDPVSIDRAVY 361

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Length = 310

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

 Score = 63.8 bits (154), Expect = 2e-12
 Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 11/167 (6%)

Query: 36  EIFLKKDFFQVTGSFKERGACYALLMLSED---QKKKGVISASLGNHAQAMCYHGSRLNI 92
            + +K +    + S K R     +    +D    K K ++ A+ GN   A+ Y  +    
Sbjct: 26  NVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEIVDATSGNTGIALAYVAAARGY 85

Query: 93  PVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLS 152
            +T+ MP    + + +     G  +++          IA  +            L     
Sbjct: 86  KITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQ--- 142

Query: 153 VLGYDHPD-IMAGQGTVGLEIVDQV-ANIDAIVVPVGGGGLIAGVAY 197
              +++P      + T G EI       +D +V  VG GG I G++ 
Sbjct: 143 ---FENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISR 186

>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Pseudomonas sp., strain ACP [TaxId: 306]

 Score = 63.9 bits (154), Expect = 2e-12
 Identities = 26/213 (12%), Positives = 60/213 (28%), Gaps = 16/213 (7%)

Query: 28  HLSELT--KMEIFLKKDFFQVTGSF---KERGACYALLM-LSEDQKKKGVISASLGNHAQ 81
            LS+    K+ ++ K++      +F   K R   Y +   L++       I     N  +
Sbjct: 23  RLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQTR 82

Query: 82  AMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV----------EGADMKEAKNIA 131
            +    + L +   +V             R     +            +G D+   ++  
Sbjct: 83  QVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWE 142

Query: 132 LKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGGGGL 191
               +          + +G S         +     V  +  +     D +VV    G  
Sbjct: 143 DALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGST 202

Query: 192 IAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCA 224
            AG+             +G++   +  ++    
Sbjct: 203 QAGMVVGFAADGRADRVIGVDASAKPAQTREQI 235

>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 386

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 63.7 bits (154), Expect = 3e-12
 Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 9/178 (5%)

Query: 31  ELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRL 90
           ++   +I+LK++     G+ K   A    L+     K + +     G H  A    G+ L
Sbjct: 62  KIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALL 121

Query: 91  NIPVTVVMPIV---APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYL 147
            + V + M         M +   +  GA VI   +  +  K+   +   +   T+   + 
Sbjct: 122 GMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHY 181

Query: 148 SSGLSVLGYDHPD-IMAGQGTVGLEIVDQVANI-----DAIVVPVGGGGLIAGVAYDH 199
             G  V  + +P  +   Q  +G E   Q+        D IV  VGGG    G+ Y  
Sbjct: 182 LIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPF 239

>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Yeast (Hansenula saturnus) [TaxId: 4906]

 Score = 62.8 bits (151), Expect = 6e-12
 Identities = 31/187 (16%), Positives = 59/187 (31%), Gaps = 19/187 (10%)

Query: 28  HLSELT--KMEIFLKKDFFQVTGSF---KERGACYALL-MLSEDQKKKGVISASLGNHAQ 81
            LS+    K+ ++ K++      +F   K R   Y +  ++  D      I     N  +
Sbjct: 23  RLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVSIGGRQSNQTR 82

Query: 82  AMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV-------------EGADMKEAK 128
            +    ++L     ++     PI + +         I              +G D+   K
Sbjct: 83  MVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRK 142

Query: 129 NIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVPVGG 188
           + A          +    + +G S   Y     +     V  + V+     D IVV    
Sbjct: 143 SFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVELGIKFDKIVVCCVT 202

Query: 189 GGLIAGV 195
           G   AG+
Sbjct: 203 GSTTAGI 209

>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 57.0 bits (136), Expect = 4e-10
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 28  HLSELTKMEIFLKKDFFQV--TGSFKERGACYALL-MLSEDQKKKGVISASLGNHAQAMC 84
           ++S     ++++K+D       G  K R   Y L   LS+       + A   NHA    
Sbjct: 29  NISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVITVGAVHSNHAFVTG 88

Query: 85  YHGSRLNIPVTVVMPIVAPIMKIQACRRY 113
               +L +   +V+     +       + 
Sbjct: 89  LAAKKLGLDAILVLRGKEELKGNYLLDKI 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	100.0
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	100.0
d1p5ja_	319	L-serine dehydratase {Human (Homo sapiens) [TaxId:	100.0
d1ve5a1	310	Threonine deaminase {Thermus thermophilus [TaxId:	100.0
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1ve1a1	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1o58a_	293	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	100.0
d1e5xa_	477	Threonine synthase {Mouse-ear cress (Arabidopsis t	100.0
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1v7ca_	351	Threonine synthase {Thermus thermophilus [TaxId: 2	100.0
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1qopb_	390	Tryptophan synthase, beta-subunit {Salmonella typh	100.0
d1v8za1	386	Tryptophan synthase, beta-subunit {Archaeon Pyroco	100.0
d1j0aa_	325	1-aminocyclopropane-1-carboxylate deaminase {Archa	99.97
d1tyza_	338	1-aminocyclopropane-1-carboxylate deaminase {Pseud	99.97
d1f2da_	341	1-aminocyclopropane-1-carboxylate deaminase {Yeast	99.96
d1vb3a1	428	Threonine synthase {Escherichia coli [TaxId: 562]}	99.91
d1kl7a_	511	Threonine synthase {Baker's yeast (Saccharomyces c	99.49
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.51
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.56
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.52
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	93.47
d1vp8a_	190	Hypothetical protein AF0103 {Archaeoglobus fulgidu	92.53
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	92.46
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	91.83
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	91.56
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	91.52
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	91.47
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	90.9
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	90.86
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	90.75
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	90.71
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	90.65
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.34
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	90.12
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.1
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	90.03
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	89.86
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	89.38
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	89.33
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	89.21
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	89.06
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	88.92
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	88.82
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	88.33
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	87.86
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	87.82
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	87.76
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	87.55
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	87.39
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	87.07
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	86.49
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	86.4
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	86.33
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	86.22
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	85.85
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	85.4
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	85.29
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	85.2
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	84.94
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	84.77
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	84.34
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	84.33
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	84.25
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	83.92
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	83.58
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	83.45
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	83.34
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	83.29
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	83.23
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	83.21
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	83.2
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	82.82
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	82.4
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	81.73
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	81.23
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	80.7
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	80.44
d1t57a_	186	Hypothetical protein MTH1675 {Methanobacterium the	80.12

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.5e-51  Score=371.47  Aligned_cols=238  Identities=35%  Similarity=0.541  Sum_probs=225.5

Q ss_pred             eeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCC
Q psy5622          15 FVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIP   93 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~   93 (269)
                      +....++|||++++ |++.+|.+||+|+|++|||||||||++.+++..+.++++..+|+++|+||||.|+|++|+.+|++
T Consensus        21 v~~~~~~TPL~~~~~L~~~lg~~i~~K~E~~nptGS~KdRga~~~i~~~~~~~~~~~vv~assGN~g~a~A~~a~~~g~~  100 (331)
T d1tdja1          21 VYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGVK  100 (331)
T ss_dssp             GGGTCCCCCEEECHHHHHHTTSEEEEECGGGSTTSSSTHHHHHHHHHTTTTSSCSSSCEEEECSSSHHHHHHHHHHTTCC
T ss_pred             cceeccCCceeEHHHhhHHHCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhCCCCeeeecccchhHHHHHHhhcccccc
Confidence            33456899999998 99999999999999999999999999999999887777788999999999999999999999999


Q ss_pred             eEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHH
Q psy5622          94 VTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIV  173 (269)
Q Consensus        94 ~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~  173 (269)
                      |++|||+.+++.|+++|+.+||+|+.++.++++..+.+.+++++.+++|+++          ++||.+++||.+++.||+
T Consensus       101 ~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~g~~t~~~Ei~  170 (331)
T d1tdja1         101 ALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVPP----------FDHPMVIAGQGTLALELL  170 (331)
T ss_dssp             EEEECCSSCCHHHHHHHHHHSCEEECCCSSHHHHHHHHHHHHHHHCCEECCS----------SCCHHHHHHHHHHHHHHH
T ss_pred             ceeeccccchhHHHHHHHhcCCEEEEcCcccccchhhhhhhhhcCCCccccc----------cCChHHhhhhhhHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999          899999999999999999


Q ss_pred             hhcCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCC
Q psy5622         174 DQVANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLV  253 (269)
Q Consensus       174 ~ql~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~  253 (269)
                      +|+++||+||+|+|+||+++|++.+|+++       .|.+++++|||++++++.+++..|++...+..+|+++|+.++.+
T Consensus       171 ~q~~~~D~vv~~~G~GG~~aG~~~~~~~~-------~~~~~ii~ve~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~  243 (331)
T d1tdja1         171 QQDAHLDRVFVPVGGGGLAAGVAVLIKQL-------MPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRI  243 (331)
T ss_dssp             HHCTTCCEEEEECSSSHHHHHHHHHHHHH-------CTTCEEEEEEETTTCHHHHHHHHTSCCCCSCCCSSSSTTCCSSC
T ss_pred             HhcCCCCEEEEeCChhHHHHHHHHHHHHh-------CCCcEEEEecccccchHHHHHhCCCeeecCCCCceeccccCCCC
Confidence            99999999999999999999999999999       99999999999999999999999998877777899999999999


Q ss_pred             CHHHHHHHhhhhcccC
Q psy5622         254 GWNAFETAAPLIDKMF  269 (269)
Q Consensus       254 ~~~~~~~~~~~~~~~~  269 (269)
                      ++.+|+.+++++|+++
T Consensus       244 ~~~~~~~~~~~~d~~~  259 (331)
T d1tdja1         244 GDETFRLCQEYLDDII  259 (331)
T ss_dssp             CCHHHHHHTTSCCEEE
T ss_pred             CHHHHHHhhccCCEEE
Confidence            9999999999988763

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=3.1e-51  Score=368.38  Aligned_cols=235  Identities=33%  Similarity=0.485  Sum_probs=222.7

Q ss_pred             ccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622          17 IRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVT   95 (269)
Q Consensus        17 ~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~   95 (269)
                      ...++|||++++ |++.+|.+||+|+|++|||||||||++.+++.++.+..+..+|+++|+||||+++|++|+++|++|+
T Consensus        17 ~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~~~~~~~~~~~~~vv~~ssGN~g~a~A~~a~~~g~~~~   96 (318)
T d1v71a1          17 KFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLTFSSGNHAQAIALSAKILGIPAK   96 (318)
T ss_dssp             TTSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHTTCCHHHHHHCEEECCSSHHHHHHHHHHHHTTCCEE
T ss_pred             ccCCCCCEEEchhhhHHHCCEEEEEeCCCCCCCCHHHHHHHHHHHHhhhccccceeeeeccchhhHHHHHhhccccccee
Confidence            345799999998 9999999999999999999999999999999988766667789999999999999999999999999


Q ss_pred             EEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhh
Q psy5622          96 VVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQ  175 (269)
Q Consensus        96 ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~q  175 (269)
                      ||+|+++++.|+++|+.+||+|+.++++++++.+.+++++++.+++|+++          |+||..++||.++++||++|
T Consensus        97 i~~p~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~a~~~a~~~g~~~~~~----------~~~~~~~~g~~t~~~Ei~~q  166 (318)
T d1v71a1          97 IIMPLDAPEAKVAATKGYGGQVIMYDRYKDDREKMAKEISEREGLTIIPP----------YDHPHVLAGQGTAAKELFEE  166 (318)
T ss_dssp             EEEETTCCHHHHHHHHHTTCEEEEECTTTTCHHHHHHHHHHHHTCBCCCS----------SSSHHHHHHHTHHHHHHHHH
T ss_pred             ecccccccHHHHHHHHHcCCcEEeccCCchHHHHHHHHHHHhcCCEecCC----------ccccccccccchHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999          89999999999999999999


Q ss_pred             cCCCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCH
Q psy5622         176 VANIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGW  255 (269)
Q Consensus       176 l~~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~  255 (269)
                      ++++|+||+|+|+||+++|++.+++..       .+.+++++|+|.+++++..++..+.....+...++++++.++.++.
T Consensus       167 ~~~~d~vvv~~G~GG~~~Gi~~~~~~~-------~~~~~ii~v~~~~~~~~~~s~~~~~~~~~~~~~~~a~~~~~~~~~~  239 (318)
T d1v71a1         167 VGPLDALFVCLGGGGLLSGSALAARHF-------APNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGN  239 (318)
T ss_dssp             HCCCSEEEEECSSSHHHHHHHHHHHHH-------CTTCEEEEEEEGGGCHHHHHHHHTSCCCCCCCCCSCTTSCCSSCCH
T ss_pred             cCCCCEEEEcCCchHHHHHHHHHHHhh-------CCCceeecccccchhhhhhccccccccccCCCCccccccccCCcch
Confidence            999999999999999999999999999       9999999999999999999999998877777789999999999999


Q ss_pred             HHHHHHhhhhccc
Q psy5622         256 NAFETAAPLIDKM  268 (269)
Q Consensus       256 ~~~~~~~~~~~~~  268 (269)
                      .+++.+++.+|++
T Consensus       240 ~~~~~~~~~~~~~  252 (318)
T d1v71a1         240 YTFSIIKEKVDDI  252 (318)
T ss_dssp             HHHHHHHHHCCEE
T ss_pred             HHHHHHHhccCce
Confidence            9999999988875

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-50  Score=363.85  Aligned_cols=231  Identities=27%  Similarity=0.321  Sum_probs=216.3

Q ss_pred             CCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEc
Q psy5622          21 WFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMP   99 (269)
Q Consensus        21 ~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp   99 (269)
                      +|||++++ |++.+|++||+|+|++|||||||||++.+++.++. +.+.++||++|+||||+|+|++|+++|++|+||||
T Consensus         7 ~TPl~~~~~L~~~~g~~i~~K~E~~nptGSfK~R~a~~~~~~a~-~~g~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p   85 (319)
T d1p5ja_           7 KTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWA-KQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVP   85 (319)
T ss_dssp             CCCEEEEHHHHHHHTSCEEEECGGGSGGGBTTHHHHHHHHHHHH-HTTCCEEEECCSSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             eCCcEEhHHhHHHHCCEEEEEeCCCCCCCCcHHHHHHHHHHHHH-HcCCCEEEEeCCCcHHHHHHHHhhhccccceeccc
Confidence            79999998 99999999999999999999999999999999985 55678999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCC-eeecCCCCCCccccCCCCcchhccchhHHHHHHhhcC-
Q psy5622         100 IVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGL-TYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA-  177 (269)
Q Consensus       100 ~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~-  177 (269)
                      +++++.|+++++.+|++|+.++++++++.+.+++++++.++ +|+++          ++|+.+++|+.+++.||++|+. 
T Consensus        86 ~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----------~~~~~~~~g~~~~~~Ei~~q~~~  155 (319)
T d1p5ja_          86 GTTPALTIERLKNEGATCKVVGELLDEAFELAKALAKNNPGWVYIPP----------FDDPLIWEGHASIVKELKETLWE  155 (319)
T ss_dssp             TTCCHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHHSTTEEECCS----------SCCHHHHHHHTHHHHHHHHHCSS
T ss_pred             cccccccccccccceeccccccccchhHHHHHHHHhhccCccccccc----------ccccccccccchhhhhhhccccC
Confidence            99999999999999999999999999999999999988764 56777          8999999999999999999997 


Q ss_pred             CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHHH
Q psy5622         178 NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNA  257 (269)
Q Consensus       178 ~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~  257 (269)
                      .||++|+|+|+||+++|++.+++++.      .+.+++++|||+++++++++++.|++.+.+...|+++|++++.+++.+
T Consensus       156 ~~d~vv~~vg~Gg~~~g~~~~~~~~~------~~~~~~i~ve~~~~~~~~~s~~~g~~~~~~~~~t~a~gl~~~~~~~~~  229 (319)
T d1p5ja_         156 KPGAIALSVGGGGLLCGVVQGLQECG------WGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGSQA  229 (319)
T ss_dssp             CCSEEEEECSSSHHHHHHHHHHHHTT------CTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSSCCHHH
T ss_pred             CCceeeecccCCcchhhhHHHHHHhc------cCCeeeeecccccccccchhhhcccccccccccccccccccccccccc
Confidence            79999999999999999999999871      478999999999999999999999988877788999999999999999


Q ss_pred             HHHHhhhhccc
Q psy5622         258 FETAAPLIDKM  268 (269)
Q Consensus       258 ~~~~~~~~~~~  268 (269)
                      |+.+++.+|++
T Consensus       230 ~~~~~~~~~~~  240 (319)
T d1p5ja_         230 LKLFQEHPIFS  240 (319)
T ss_dssp             HHHHHHSCEEE
T ss_pred             chhhhhcccee
Confidence            99999988865

>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.1e-49  Score=355.19  Aligned_cols=232  Identities=33%  Similarity=0.481  Sum_probs=213.3

Q ss_pred             cccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622          18 RDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTV   96 (269)
Q Consensus        18 ~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i   96 (269)
                      .+|+|||++++ |++.+|.+||+|+|++|||||||||+|.+++.+.   .+..+|+++|+||||.|+|++|+++|++|+|
T Consensus        16 ~ig~TPL~~~~~L~~~~g~~i~~K~E~~nPtGSfKdRgA~~~~~~~---~~~~~vv~aSsGN~g~a~A~~aa~~G~~~~i   92 (310)
T d1ve5a1          16 YTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALAL---ENPKGLLAVSSGNHAQGVAYAAQVLGVKALV   92 (310)
T ss_dssp             GSCCCCEEECHHHHHHTTSEEEEEEGGGSGGGBTHHHHHHHHHHHS---SSCCCEEEECSSHHHHHHHHHHHHHTCCEEE
T ss_pred             cCCCCceeEhhhhhHHhCCEEEEEeCCCCCcCCcHHHHHHHHHHHh---cccCCccccCchhhHHHHHHHHHHcCCeEEE
Confidence            35799999998 9999999999999999999999999998877654   3456799999999999999999999999999


Q ss_pred             EEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhc
Q psy5622          97 VMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQV  176 (269)
Q Consensus        97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql  176 (269)
                      |||+++++.|+++++.|||+++.++++++++.+.+++.+++.+++|+++          |+||.+++|+++++.||++|+
T Consensus        93 ~vp~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~np~~~~g~~t~~~Ei~~q~  162 (310)
T d1ve5a1          93 VMPEDASPYKKACARAYGAEVVDRGVTAKNREEVARALQEETGYALIHP----------FDDPLVIAGQGTAGLELLAQA  162 (310)
T ss_dssp             ECCCC--CCHHHHHHHTTCEEECTTCCTTTHHHHHHHHHHHHCCEECCS----------SSSHHHHHHHHHHHHHHHHHH
T ss_pred             eecccchHHHHHHHhhhccccceeeccchhHHHHHHHHHHhcCCcCCCC----------CCChhhHhhhhhhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999          899999999999999999998


Q ss_pred             C----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCC-CcccccccccCC
Q psy5622         177 A----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVS-VQPTLADGLAVP  251 (269)
Q Consensus       177 ~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~-~~~t~a~gl~~~  251 (269)
                      +    .||++++|+|+||+++|++.++++.       .+.+++++|||.+++++..++..|++.... ...++++++..+
T Consensus       163 ~~~~~~~d~vv~~~g~Gg~~~g~~~~~~~~-------~~~~~ii~ve~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  235 (310)
T d1ve5a1         163 GRMGVFPGAVLAPVGGGGLLAGLATAVKAL-------SPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTL  235 (310)
T ss_dssp             HHHTCCCSEEEEECSSSHHHHHHHHHHHHH-------CTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCCS
T ss_pred             HhcCCceeeeeeccCcchhhhhhhhhhhcc-------CCccceEEEEeeccchhhhhhccccccccCccccccccccCCC
Confidence            5    6999999999999999999999999       999999999999999999999999876654 356899999999


Q ss_pred             CCCHHHHHHHhhhhcccC
Q psy5622         252 LVGWNAFETAAPLIDKMF  269 (269)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~  269 (269)
                      .++..+|+.+++++|+++
T Consensus       236 ~~g~~~~~~~~~~~d~~v  253 (310)
T d1ve5a1         236 SLGERTFPILRERVDGIL  253 (310)
T ss_dssp             SCCTTTHHHHHHHCCEEE
T ss_pred             CcchhhHHHhcccCCeEE
Confidence            999999999999998864

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=100.00  E-value=1.5e-46  Score=334.39  Aligned_cols=232  Identities=21%  Similarity=0.211  Sum_probs=193.5

Q ss_pred             ccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhc---CCccEEEeCCChHHHHHHHHHHhcCC
Q psy5622          17 IRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQ---KKKGVISASLGNHAQAMCYHGSRLNI   92 (269)
Q Consensus        17 ~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~---~~~~vv~~SsGN~g~alA~~a~~~G~   92 (269)
                      ..+|+|||++++ |++.+|++||+|+|++|||||||||++.+++..+.+++   +..+|+++|+||||+|+|++|+++|+
T Consensus         5 ~~IG~TPL~~~~~l~~~~g~~iy~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~   84 (292)
T d2bhsa1           5 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGY   84 (292)
T ss_dssp             GGSSCCCEEECSSSSCCSSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTSEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             cccCCCceEECCccChhhCCEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhCCcCCCceeeeecccchhHHHHHHHHhcCc
Confidence            357899999998 99999999999999999999999999999999887654   36789999999999999999999999


Q ss_pred             CeEEEEcCCCcHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcc-hhccchhHH
Q psy5622          93 PVTVVMPIVAPIMKIQACRRYGATVIVEGAD--MKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPD-IMAGQGTVG  169 (269)
Q Consensus        93 ~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~-~~~g~~t~~  169 (269)
                      +|+||||+.+++.|+++|+.|||+|+.++.+  ..++...+.+..++.+.+|.++          |+|+. .++|+.+++
T Consensus        85 ~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~a  154 (292)
T d2bhsa1          85 RMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGKLLDQ----------FNNPDNPYAHYTTTG  154 (292)
T ss_dssp             EEEEEEESCCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHTSSEECCT----------TTCTHHHHHHHHTHH
T ss_pred             ceEeeeccCchhhhhHHHHHhCCCcceeecccchHHHHHHHhhccccccccccCC----------CchhcchhhHHHHHH
Confidence            9999999999999999999999999998754  4456666777778888999998          78876 568899999


Q ss_pred             HHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCC-CCCccccccc
Q psy5622         170 LEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTP-VSVQPTLADG  247 (269)
Q Consensus       170 ~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~-~~~~~t~a~g  247 (269)
                      +||++|++ .+|++|+|+|+||+++|+++++|+.       .+.+++++|||++++++......+.... ........+.
T Consensus       155 ~Ei~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~-------~~~~~i~~Vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (292)
T d2bhsa1         155 PEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQ-------SKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDE  227 (292)
T ss_dssp             HHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTS-------SSCCEEEEEEECTTCCCTTCCCCCTTTCCTTCCGGGCSE
T ss_pred             HHhHHhcCCCCCcccccCCCccchhhhhhhhhhc-------cCcceEEEeccccccccccccccccccccccccccccce
Confidence            99999998 6999999999999999999999998       8999999999999998854322221111 1112333343


Q ss_pred             ccCCCCCHHHHHHHhhhhc
Q psy5622         248 LAVPLVGWNAFETAAPLID  266 (269)
Q Consensus       248 l~~~~~~~~~~~~~~~~~~  266 (269)
                      + +...+..+++.++++++
T Consensus       228 ~-~~v~d~ea~~a~~~L~~  245 (292)
T d2bhsa1         228 V-LDIHQRDAENTMRELAV  245 (292)
T ss_dssp             E-EEECHHHHHHHHHHHHH
T ss_pred             E-EEcCHHHHHHHHHHHHH
Confidence            3 23455677888887765

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.2e-45  Score=333.04  Aligned_cols=196  Identities=15%  Similarity=0.131  Sum_probs=173.3

Q ss_pred             eeccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC----CccEEEeCCChHHHHHHHHHHh
Q psy5622          15 FVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK----KKGVISASLGNHAQAMCYHGSR   89 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~----~~~vv~~SsGN~g~alA~~a~~   89 (269)
                      +...+|+|||++++ |++.+|.+||+|+|++|||||||||+|.+++.++.+++.    ..+||++|+||||.|+|++|+.
T Consensus         7 i~~~iG~TPLv~~~~l~~~~g~~i~~K~E~~nptGSfKdRgA~~~i~~a~~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~   86 (320)
T d1z7wa1           7 VTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAA   86 (320)
T ss_dssp             GGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHH
T ss_pred             hhhhcCCCCeEECCCcccccCCEEEEEeCCCCCccCcHHHHHHHHHHHHHHcCCCCCCCceEEeeCCchHHHHHHHHHHh
Confidence            45567999999998 999999999999999999999999999999998876543    4679999999999999999999


Q ss_pred             cCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCH---HHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcc-hhccc
Q psy5622          90 LNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADM---KEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPD-IMAGQ  165 (269)
Q Consensus        90 ~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~-~~~g~  165 (269)
                      +|++|++|||+++++.|+++++.|||+|+.++...   .+..+...+..++.+++|+++          ++|+. .++|+
T Consensus        87 ~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~n~~~g~  156 (320)
T d1z7wa1          87 KGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQ----------FENPANPKIHY  156 (320)
T ss_dssp             HTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEEECCT----------TTCTHHHHHHH
T ss_pred             hccceEEeehhhhhhhhhhhhhccCcceEEeeccccccccchhHHHHHHhCCCceeccc----------ccccchHHHhh
Confidence            99999999999999999999999999999987432   233334444555567888888          78876 67899


Q ss_pred             hhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH
Q psy5622         166 GTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS  227 (269)
Q Consensus       166 ~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~  227 (269)
                      +|++.||++|+. .||+||+|+|+||+++|++++|+..       .|.+++++|||.+|+.+.
T Consensus       157 ~t~~~EI~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~-------~~~~~~igve~~~s~~~~  212 (320)
T d1z7wa1         157 ETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQ-------NANVKLYGVEPVESAILS  212 (320)
T ss_dssp             HTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHH-------CTTCEEEEEEEGGGCGGG
T ss_pred             hhHHHHHHHhccCCCCEEEeCCCCCcccchhhhhhhhh-------hcceeeecccccCCcccc
Confidence            999999999995 7999999999999999999999999       999999999999998763

>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=6e-45  Score=325.37  Aligned_cols=196  Identities=21%  Similarity=0.268  Sum_probs=177.1

Q ss_pred             ccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhc-----CCccEEEeCCChHHHHHHHHHHhc
Q psy5622          17 IRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQ-----KKKGVISASLGNHAQAMCYHGSRL   90 (269)
Q Consensus        17 ~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~-----~~~~vv~~SsGN~g~alA~~a~~~   90 (269)
                      -.+|+|||++++ |++.+|++||+|+|++|||||||||++.+++.++.+++     +.++|+++|+||||.|+|++|+.+
T Consensus         5 ~~ig~TPLi~~~~l~~~~g~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~~~vv~~SsGN~g~a~A~~a~~~   84 (302)
T d1ve1a1           5 GAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASR   84 (302)
T ss_dssp             GGCCCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHHHHH
T ss_pred             CccCCCCeEECcccchhhCCEEEEEeCCCCcccCcHHHHHHHHHHHHHHhCCCCCCCCcEEEEecCCcchhhhhhhhhcc
Confidence            356899999998 99999999999999999999999999999999886553     357899999999999999999999


Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcc-hhccchh
Q psy5622          91 NIPVTVVMPIVAPIMKIQACRRYGATVIVEGAD--MKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPD-IMAGQGT  167 (269)
Q Consensus        91 G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~-~~~g~~t  167 (269)
                      |++|++|+|+.+++.|++.++.+|++++.++..  ..+....+.+..++.+++|+++          |+|+. .+.|++|
T Consensus        85 g~~~~iv~p~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~t  154 (302)
T d1ve1a1          85 GYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREEALRLKEELGAFMPDQ----------FKNPANVRAHYET  154 (302)
T ss_dssp             TCEEEEEEETTCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHHTCBCCCT----------TTCHHHHHHHHHT
T ss_pred             CcceeEeeecccchheeehhhhhhhcchhcccccchHHHHHHhhhhhhccCcccccc----------CccchhHHHHHHH
Confidence            999999999999999999999999999988753  4455556667788889999999          88887 5677899


Q ss_pred             HHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHH
Q psy5622         168 VGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTA  229 (269)
Q Consensus       168 ~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~  229 (269)
                      ++.||++|++ .||+||+|+|+||+++|++.+|++.       .|.+++++|||++++++...
T Consensus       155 ~~~EI~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~-------~~~~~iigve~~~~~~~~~~  210 (302)
T d1ve1a1         155 TGPELYEALEGRIDAFVYGSGTGGTITGVGRYLKER-------IPHVKVIAVEPARSNVLSGG  210 (302)
T ss_dssp             HHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHTT-------CTTCEEEEEEEGGGCTTTTC
T ss_pred             HHHHHHHHcCCCCCeEEEeecCcHHHHHHHHHHHhc-------CCCCEEEEEEecccceeeec
Confidence            9999999998 7999999999999999999999998       99999999999999887643

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.8e-44  Score=320.14  Aligned_cols=191  Identities=27%  Similarity=0.349  Sum_probs=170.3

Q ss_pred             cccCCccccccccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC-CccEEEeCCChHHHHHHHHHHhcCCCeEE
Q psy5622          18 RDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK-KKGVISASLGNHAQAMCYHGSRLNIPVTV   96 (269)
Q Consensus        18 ~~~~TPl~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~-~~~vv~~SsGN~g~alA~~a~~~G~~~~i   96 (269)
                      .+|+|||++++   .++.+||+|+|++|||||||||++.+++.++.+++. ...|+++|+||||.|+|++|+.+|++|++
T Consensus         7 ~ig~TPL~~~~---~l~~~i~~K~E~~nptGSfK~Rga~~~i~~a~~~g~~~~~vv~~SsGN~g~a~A~~a~~~g~~~~i   83 (293)
T d1o58a_           7 LIGSTPIVRLD---SIDSRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNGIVEPTSGNMGIAIAMIGAKRGHRVIL   83 (293)
T ss_dssp             HSCCCCEEECT---TTCTTEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCTTCEEEECSSHHHHHHHHHHHHHTCCEEE
T ss_pred             hcCCCCcEECC---CCCCEEEEEECCCCCccChHHHHHHHHHHHHHHcCCCCcceEEecCcchhhHHHHhhhhccceeEe
Confidence            45899999986   235689999999999999999999999999865543 46799999999999999999999999999


Q ss_pred             EEcCCCcHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcc-hhccchhHHHHHH
Q psy5622          97 VMPIVAPIMKIQACRRYGATVIVEGAD--MKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPD-IMAGQGTVGLEIV  173 (269)
Q Consensus        97 vvp~~~~~~~~~~l~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~-~~~g~~t~~~EI~  173 (269)
                      |+|+++++.|+++++.|||+|+.++.+  ...+...+.+++++.+++|+++          |+|+. .+.|+.+++.||+
T Consensus        84 ~~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~t~~~Ei~  153 (293)
T d1o58a_          84 TMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEISRETGAHMLNQ----------FENPYNVYSHQFTTGPEIL  153 (293)
T ss_dssp             EEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHHCCBCCCT----------TTCHHHHHHHHHTHHHHHH
T ss_pred             eccccccHHHeeccccCCcEEEEecCcchhhHHHHHHHHHHhccCCEEeee----------ccccceeeeccccHHHhhh
Confidence            999999999999999999999998855  4455667778899999999999          88876 5688999999999


Q ss_pred             hhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH
Q psy5622         174 DQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS  227 (269)
Q Consensus       174 ~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~  227 (269)
                      +|++ +||+||+|+|+||+++|++.+||++.      .+.+|+++|||++|+++.
T Consensus       154 ~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~------~~~~~ii~vep~~~~~l~  202 (293)
T d1o58a_         154 KQMDYQIDAFVAGVGTGGTISGVGRVLKGFF------GNGVKIVAVEPAKSPVLS  202 (293)
T ss_dssp             HHTTTCCSEEEEECSSSHHHHHHHHHHHHHH------GGGSEEEEEEETTSCTTT
T ss_pred             hhcCCCCCEEEEecCcchhHHHHHHHHHHHC------CCCCeEEEEecCCCcccc
Confidence            9998 89999999999999999999999872      446999999999999875

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-44  Score=329.04  Aligned_cols=196  Identities=19%  Similarity=0.254  Sum_probs=166.6

Q ss_pred             eeccccCCcccccc-ccccCC--CeEEEEeCCCCCCCchhhHHHHHHHHhchHhc---CCccEEEeCCChHHHHHHHHHH
Q psy5622          15 FVIRDQWFNSKKSH-LSELTK--MEIFLKKDFFQVTGSFKERGACYALLMLSEDQ---KKKGVISASLGNHAQAMCYHGS   88 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~~~~g--~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~---~~~~vv~~SsGN~g~alA~~a~   88 (269)
                      +...+|+|||++++ |++.+|  ++||+|+|++|||||||||+|.+++.++.+++   +.++|+++|+||||+|+|++|+
T Consensus        38 i~~~IG~TPLv~l~~ls~~~G~~~~i~~K~E~~nptGSfKdRga~~~i~~a~~~g~~~~~~~vv~aSsGN~g~a~A~~a~  117 (355)
T d1jbqa_          38 ILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAA  117 (355)
T ss_dssp             GGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTCSCTTCEEEEECSSHHHHHHHHHHH
T ss_pred             HHHhcCCCCcEECcchhHHhCCCCEEEEEECCCCCccCHHHHHHHHHHHHHHHcCCcccCceEEEecccchhhHHHHHHH
Confidence            33356999999998 999887  48999999999999999999999999987664   3578999999999999999999


Q ss_pred             hcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHH-----HHHHHHHHHHhhh-CCeeecCCCCCCccccCCCCc-ch
Q psy5622          89 RLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGADMK-----EAKNIALKKGAEL-GLTYINGYLSSGLSVLGYDHP-DI  161 (269)
Q Consensus        89 ~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~-----~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~g~~n~-~~  161 (269)
                      ++|++|+||||.++++.|+++|+.|||+|+.++.+..     +......++..+. +.+|.++          +.|+ ..
T Consensus       118 ~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~  187 (355)
T d1jbqa_         118 VRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQ----------YRNASNP  187 (355)
T ss_dssp             HHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHHHHHHSTTEECCCT----------TTCTHHH
T ss_pred             hccCCeEEEeeccchHHHHHHHHhcCCeEEEecccccchhhhhhhhHHHHHHHhccccccccc----------cCcccch
Confidence            9999999999999999999999999999999864321     2233334444444 4455555          4554 47


Q ss_pred             hccchhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH
Q psy5622         162 MAGQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS  227 (269)
Q Consensus       162 ~~g~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~  227 (269)
                      ++||+|+++||++|++ +||+||+|+|+||+++|++.+|++.       ++.+++++|||++++.+.
T Consensus       188 ~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~-------~~~~kii~vep~gs~~~~  247 (355)
T d1jbqa_         188 LAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEK-------CPGCRIIGVDPEGSILAE  247 (355)
T ss_dssp             HHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHH-------CTTCEEEEEEETTCSCSS
T ss_pred             hhhcccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhc-------CCcceEEeecccCCcccc
Confidence            8999999999999997 8999999999999999999999999       999999999999987654

>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.8e-43  Score=333.13  Aligned_cols=229  Identities=20%  Similarity=0.181  Sum_probs=191.9

Q ss_pred             eeccccCCcccccc-cccc-CCC-eEEEEeCCCCCCCchhhHHHHHHHHhchHh----cCCccEEEeCCChHHHHHHHHH
Q psy5622          15 FVIRDQWFNSKKSH-LSEL-TKM-EIFLKKDFFQVTGSFKERGACYALLMLSED----QKKKGVISASLGNHAQAMCYHG   87 (269)
Q Consensus        15 ~~~~~~~TPl~~~~-l~~~-~g~-~i~~K~E~~nptGS~K~R~a~~~l~~~~~~----~~~~~vv~~SsGN~g~alA~~a   87 (269)
                      ++++||+|||++++ |+++ +|. +||+|+|++|||||||||++.+++..+.+.    .+..+|+++|+||||+|+|++|
T Consensus       115 v~lgeG~TPLv~~~~L~~~~lG~~~ly~K~E~~nPTGSfKDRga~~~i~~a~~~~~~~~~~~~vv~aSsGNtg~AlAa~a  194 (477)
T d1e5xa_         115 VSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYC  194 (477)
T ss_dssp             CCCCCCCCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHHHHHHHHHHHHTTCCCCEEEECCCSHHHHHHHHHH
T ss_pred             cccCCCCCceEEchhhhHhhCCCceEEEEECCCCCCcccHHHHHHHHHHHHHHhccccCCcceEEeecCchHHHHHHHHH
Confidence            78999999999998 8875 675 899999999999999999999999887542    2345799999999999999999


Q ss_pred             HhcCCCeEEEEcCC-CcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccch
Q psy5622          88 SRLNIPVTVVMPIV-APIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQG  166 (269)
Q Consensus        88 ~~~G~~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~  166 (269)
                      +++|++|+||+|++ .++.|+.+++.+||+|+.++++++++.+.+++++++.++ |..+          +.||++++|++
T Consensus       195 a~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~V~~v~g~~dda~~~~~e~a~~~~~-~~~~----------~~N~~~~~g~~  263 (477)
T d1e5xa_         195 ASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMKLIREITAELPI-YLAN----------SLNSLRLEGQK  263 (477)
T ss_dssp             HHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSCE-EEGG----------GSHHHHHHHHT
T ss_pred             HhcCCCeEEEeCCCCcCHHHHHHHHhcCccccccccCchhhHHHhhhhccccce-eccc----------ccccccchhhh
Confidence            99999999999986 688899999999999999999999999999999887765 4555          58999999999


Q ss_pred             hHHHHHHhhcC--CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCC--CCCCcc
Q psy5622         167 TVGLEIVDQVA--NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPT--PVSVQP  242 (269)
Q Consensus       167 t~~~EI~~ql~--~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~--~~~~~~  242 (269)
                      ++++||++|+.  .||++++|+|+|++++|++.+++++ ...|.+.+.+++++||++++++++.+++.|...  +....+
T Consensus       264 t~~~Ei~~ql~~~~pd~v~vp~G~gg~~~g~~~g~~~l-~~~G~~~~~P~~~~v~a~~~~~~~~~~~~g~~~~~~~~~~~  342 (477)
T d1e5xa_         264 TAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMC-QELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTAST  342 (477)
T ss_dssp             HHHHHHHHHTTSCCCSEEEEECSSTHHHHHHHHHHHHH-HHTTSSSCCCEEEEEEETTSSTHHHHHHTTTTTCCC-----
T ss_pred             HHHHHHHHhhccccceeeeecccCCcchhhHHHHHHHH-hhcCccccCceEEEEeccchhhHHHHHHcCCCccccccccc
Confidence            99999999997  6999999999999999999999998 788888888999999999999999999998643  344567


Q ss_pred             cccccccCCCCCH
Q psy5622         243 TLADGLAVPLVGW  255 (269)
Q Consensus       243 t~a~gl~~~~~~~  255 (269)
                      |+++++.++.|..
T Consensus       343 T~a~~i~i~~p~~  355 (477)
T d1e5xa_         343 TFASAIQIGDPVS  355 (477)
T ss_dssp             -----------CC
T ss_pred             ccccccccccccc
Confidence            9999988877654

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=4.1e-44  Score=329.10  Aligned_cols=193  Identities=19%  Similarity=0.175  Sum_probs=171.2

Q ss_pred             cccCCccccccccccCCCeEEEEeCCCCCCC-chhhHHHHHHHHhchHhcC-CccEEEeCCChHHHHHHHHHHhcCCCeE
Q psy5622          18 RDQWFNSKKSHLSELTKMEIFLKKDFFQVTG-SFKERGACYALLMLSEDQK-KKGVISASLGNHAQAMCYHGSRLNIPVT   95 (269)
Q Consensus        18 ~~~~TPl~~~~l~~~~g~~i~~K~E~~nptG-S~K~R~a~~~l~~~~~~~~-~~~vv~~SsGN~g~alA~~a~~~G~~~~   95 (269)
                      +-.+|||+++++....|++||+|+|++|||| |||||+|.+++.++.++.+ ..+|+++|+||||+|+|++|+.+|++|+
T Consensus        92 ~~~PTPLvrl~l~~~~G~~IylKlE~~NPtGgSfKdR~A~~~i~~A~~~~~~g~~VVeaSSGN~GiAlA~~aa~lGik~~  171 (382)
T d1wkva1          92 RGKPTPLVRSRLQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEKGSLVADATSSNFGVALSAVARLYGYRAR  171 (382)
T ss_dssp             HSCSCCEEECCCCCSTTEEEEEEEGGGSTTTSBTTHHHHHHHHHHHTTTSCTTCEEEEECCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCCCEEECCCCCCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHhccCCCCEEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence            3457999998877678999999999999986 9999999999998754433 3569999999999999999999999999


Q ss_pred             EEEcCCCcHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcc-hhccchhHHHHH
Q psy5622          96 VVMPIVAPIMKIQACRRYGATVIVEGA--DMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPD-IMAGQGTVGLEI  172 (269)
Q Consensus        96 ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~-~~~g~~t~~~EI  172 (269)
                      ||||+++++.|+++|+.|||+|+.++.  +..++...+.+.+++.+++|+++          |.||. ...|++|++.||
T Consensus       172 Iv~P~~~~~~K~~~ira~GAeVi~~~~~~~~~~~~~~a~~~a~~~~~~~~~q----------~~N~~~~~~h~~ttg~EI  241 (382)
T d1wkva1         172 VYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNEGFVHVNQ----------FYNDANFEAHMRGTAREI  241 (382)
T ss_dssp             EEEETTSCHHHHHHHHHTTCEEEEETTCSSSGGGHHHHHHHHHHHCCEECCT----------TTCHHHHHHHHHTHHHHH
T ss_pred             EEeeccccccccccccccCcceeecCcchhhHHHHHHHhhhccccCcccccc----------ccccceeeehhhcchHHH
Confidence            999999999999999999999999874  33455666777888889999999          88987 578889999999


Q ss_pred             HhhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH
Q psy5622         173 VDQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS  227 (269)
Q Consensus       173 ~~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~  227 (269)
                      ++|++    .+|+|++|+|+||+++|++.++|+.       +|.+++++|||.+++.+.
T Consensus       242 ~eQl~~~~~~~d~vv~~vGtGG~~~Gi~~~lk~~-------~p~vkiigVep~~~~~i~  293 (382)
T d1wkva1         242 FVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSV-------DPSIRAVLVQPAQGDSIP  293 (382)
T ss_dssp             HHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHH-------CTTCEEEEEEECTTCCCT
T ss_pred             HHHhhcCCCceeEEEEecccccccccceeehhhh-------CCccceeEeccccccccc
Confidence            99985    5899999999999999999999999       999999999999987763

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=9.6e-43  Score=312.39  Aligned_cols=199  Identities=19%  Similarity=0.215  Sum_probs=168.6

Q ss_pred             eccccCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhc---CCccEEEeCCChHHHHHHHHHHhcC
Q psy5622          16 VIRDQWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQ---KKKGVISASLGNHAQAMCYHGSRLN   91 (269)
Q Consensus        16 ~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~---~~~~vv~~SsGN~g~alA~~a~~~G   91 (269)
                      +..+|+|||++++ |.+  +.+||+|+|++|||||||||+|.++|..+.+++   +.++|+++|+||||+|+|++|+++|
T Consensus         7 ~~~ig~TPLv~~~~l~~--~~~I~lK~E~~nptGSfK~RgA~~~i~~a~~~g~~~~~~~vv~~SsGN~g~a~A~~a~~~G   84 (310)
T d1y7la1           7 SYSIGNTPLVRLKHFGH--NGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEIVDATSGNTGIALAYVAAARG   84 (310)
T ss_dssp             GGGCCCCCEEECSSSSS--TTCEEEEETTSSGGGBTHHHHHHHHHHHHHHTTSSCTTCEEEESCCSHHHHHHHHHHHHHT
T ss_pred             hhhcCCCCeEECCCCCC--CCEEEEEECCCCCcCcCHHHHHHHHHHHHHHcCCCCCCceeeeecCCCchHHHHHHHHHhh
Confidence            4457999999998 765  678999999999999999999999998876553   3478999999999999999999999


Q ss_pred             CCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHH--h--hhCCeeecCCCCCCccccCCCCcc-hhccch
Q psy5622          92 IPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKG--A--ELGLTYINGYLSSGLSVLGYDHPD-IMAGQG  166 (269)
Q Consensus        92 ~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~--~--~~~~~~~~~~~~~~~~~~g~~n~~-~~~g~~  166 (269)
                      ++|+||||.++++.|+++++.|||+|+.+++..++..+.+++..  .  ..+++|.++          ++|+. ...|++
T Consensus        85 ~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~  154 (310)
T d1y7la1          85 YKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQ----------FENPANPQIHRE  154 (310)
T ss_dssp             CCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTTEECCCT----------TTCTHHHHHHHH
T ss_pred             ccccccchhhhhhhhhhhHHHhCCceEeccCccccchhhHHHHHHHHhhcCccccCCC----------CcchhhHHHhhh
Confidence            99999999999999999999999999999876554333322222  2  224556676          78877 467899


Q ss_pred             hHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHH-HHhcCCCCCCCcEEEEEcCCCChHHHHHHHcC
Q psy5622         167 TVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPD-IMAGQGTVGLEIVDQGVESDRCASFSTAIKHG  233 (269)
Q Consensus       167 t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~-~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g  233 (269)
                      +++.||++|++ .||+||+|+|+||+++|++.++|. .       .+.+++++|||.+++.+...+...
T Consensus       155 ~~a~Ei~~~~~~~~d~vv~~~G~Gg~~~G~~~~lk~~~-------~~~~~~i~ve~~~~~~~~~~~~~~  216 (310)
T d1y7la1         155 TTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIKLDF-------GKQITSVAVEPVESPVISQTLAGE  216 (310)
T ss_dssp             THHHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHTS-------CCCCEEEEEEETTSCHHHHHHHTC
T ss_pred             hHHHHHHHhcCCCCCEEEecCcCCcchhHHHHHHHHhh-------cccceeccccccCchhhhhhhcCC
Confidence            99999999998 799999999999999999999985 5       889999999999998887666543

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.2e-41  Score=306.04  Aligned_cols=203  Identities=20%  Similarity=0.232  Sum_probs=183.9

Q ss_pred             cceeccccCCcccccc---ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHh
Q psy5622          13 LGFVIRDQWFNSKKSH---LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSR   89 (269)
Q Consensus        13 ~~~~~~~~~TPl~~~~---l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~   89 (269)
                      .-+++++|+|||++++   ++..+|++||+|+|++|||||||||++.+++.++. +.+.++++++|+||||.++|++|++
T Consensus        20 ~~i~~~~gnTPLv~l~~~~l~~~~g~~i~~K~E~~nptGSfK~R~a~~~i~~a~-~~g~~~iv~~SsGN~g~a~a~~a~~   98 (351)
T d1v7ca_          20 PVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAV-EGGAQAVACASTGNTAASAAAYAAR   98 (351)
T ss_dssp             CCCCSCCCCCCEEECCCCHHHHTTTEEEEEEEGGGSTTSBTHHHHHHHHHHHHH-HTTCSEEEEECSSHHHHHHHHHHHH
T ss_pred             CccccCCCCCCCeECCCcchhhccCCEEEEEEcCCCCccChHHHHHHHHHHHHH-hcCCCeeeeeccccHHHHHHHHHhh
Confidence            4478999999999875   56778999999999999999999999999999875 5567899999999999999999999


Q ss_pred             cCCCeEEEEcCCC-cHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhH
Q psy5622          90 LNIPVTVVMPIVA-PIMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTV  168 (269)
Q Consensus        90 ~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~  168 (269)
                      +|++|+|+||++. +..+..+++.+||+|+.++++++++.+.+++++++.++++.++           .||..++||.++
T Consensus        99 ~g~~~~i~~p~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~a~~l~~~~~~~~~~~-----------~~~~~~~g~~t~  167 (351)
T d1v7ca_          99 AGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFDDALRLTQKLTEAFPVALVNS-----------VNPHRLEGQKTL  167 (351)
T ss_dssp             HTCEEEEEEETTCSCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSCEECST-----------TSHHHHHHHTHH
T ss_pred             hcccceeecCCchHHHHHHHhhhcCCCceEeeccccchhhhhHHHHhhhhccccccc-----------cCchhhhhhhhH
Confidence            9999999999876 5678888999999999999999999999999999988877654           688899999999


Q ss_pred             HHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHH
Q psy5622         169 GLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFST  228 (269)
Q Consensus       169 ~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~  228 (269)
                      ++||++|++ .+|++++++|+||+.+|++.+++.. ...+...+.+++++|++.++.++..
T Consensus       168 ~~Ei~eQl~~~~d~~~~~~g~gg~~~g~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~  227 (351)
T d1v7ca_         168 AFEVVDELGDAPHYHALPVGNAGNITAHWMGYKAY-HALGKAKRLPRMLGFQAAGAAPLVL  227 (351)
T ss_dssp             HHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHH-HHTTSCSSCCEEEEEEEGGGCHHHH
T ss_pred             HHHHHHHHhhhccceeeeecccCCcchhHHHHHHH-hhcccccCCcceeeeeccccchhhh
Confidence            999999998 8999999999999999999999887 5566778899999999999988864

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1e-40  Score=297.36  Aligned_cols=199  Identities=16%  Similarity=0.171  Sum_probs=165.9

Q ss_pred             eeccccCCccccccccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcC---CccEEEeCCChHHHHHHHHHHhcC
Q psy5622          15 FVIRDQWFNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQK---KKGVISASLGNHAQAMCYHGSRLN   91 (269)
Q Consensus        15 ~~~~~~~TPl~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~---~~~vv~~SsGN~g~alA~~a~~~G   91 (269)
                      ++..+|+|||++++  +..+.+||+|+|++|||||||+|++.+++.++.++++   ..+++++|+||||.|+|++|+.+|
T Consensus         7 i~~~ig~TPLi~L~--~l~~~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~vv~assGn~g~a~A~~a~~~g   84 (302)
T d1fcja_           7 NSLTIGHTPLVRLN--RIGNGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVELVEPTNGNTGIALAYVAAARG   84 (302)
T ss_dssp             GGGGCCCCCEEECS--SSSSSCEEEEETTSSGGGBTHHHHHHHHHHHHHHHTCCCTTCEEEEECSSHHHHHHHHHHHHHT
T ss_pred             HHHhhCCCCcEECC--ccCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHcCCCCCCceEEEeccccchhHHHHHHHHhc
Confidence            44567899999865  3346799999999999999999999999998866543   367999999999999999999999


Q ss_pred             CCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhh----hCCeeecCCCCCCccccCCCCcc-hhccch
Q psy5622          92 IPVTVVMPIVAPIMKIQACRRYGATVIVEGADMKEAKNIALKKGAE----LGLTYINGYLSSGLSVLGYDHPD-IMAGQG  166 (269)
Q Consensus        92 ~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~g~~n~~-~~~g~~  166 (269)
                      ++|++|||.++++.|+.+++.||++|+.+++.+.+....++.....    .+.++.++          ++++. ...|++
T Consensus        85 ~~~~i~~p~~~~~~k~~~~~~~ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~  154 (302)
T d1fcja_          85 YKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQ----------FSNPANPEIHEK  154 (302)
T ss_dssp             CCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHTSTTTEEECCT----------TTCTHHHHHHHH
T ss_pred             cCCceEEeecCcHHHHHHHHHhccceEEeccccccchhhhHHHHHHhhhccceecccc----------ccccchhHHHHh
Confidence            9999999999999999999999999999998777666655444332    23345555          56665 678899


Q ss_pred             hHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCC--CcEEEEEcCCCChHHHHHHHc
Q psy5622         167 TVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGL--EIVDQGVESDRCASFSTAIKH  232 (269)
Q Consensus       167 t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~--~~~vigVe~~~~~~~~~~~~~  232 (269)
                      ++++||++|++ .||+||+|+|+||+++|++.++|+.       .+  .+.+++++|..+..+......
T Consensus       155 ti~~Ei~e~~~~~~d~vv~~vG~GG~~~Gi~~~lk~~-------~~~~~~~~v~~~~~~s~~~~~~~~~  216 (302)
T d1fcja_         155 TTGPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIKGT-------KGKTDLITVAVEPTDSPVIAQALAG  216 (302)
T ss_dssp             THHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTT-------TCCTTCEEEEEEETTSCHHHHHHTT
T ss_pred             HHHHHHHHhcCCCCCEEEEcCCCccccccceeeeeec-------cccccccccccccccchhhhccccc
Confidence            99999999998 8999999999999999999999988       55  456777888888877655443

>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.6e-36  Score=279.66  Aligned_cols=230  Identities=22%  Similarity=0.222  Sum_probs=171.4

Q ss_pred             cCCcccccc-ccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEE
Q psy5622          20 QWFNSKKSH-LSELTKMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVM   98 (269)
Q Consensus        20 ~~TPl~~~~-l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivv   98 (269)
                      .+|||++++ |++.+|++||+|+|++|||||||||++..++..+.+.++.+.++++|+||||+++|++|+++|++|+|||
T Consensus        54 rpTPL~~~~~Ls~~lg~~IylK~E~lnptGS~K~R~a~~~i~~A~~~G~~~iv~easaGN~g~a~A~aaa~~Gl~~~I~m  133 (390)
T d1qopb_          54 RPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYM  133 (390)
T ss_dssp             CSCCEEECHHHHTTSSEEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCchhhEhHhhhhhhCCEEEEEEecCCcccccchhHHHHHHHHHhhcCCceeeeehhHHHHHHHHHHHHHhccCceEEee
Confidence            369999998 9999999999999999999999999999999998777766778899999999999999999999999999


Q ss_pred             cCCCc---HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHH-hhhC-CeeecCCCCCCccccCCCCcc-hhccchhHH
Q psy5622          99 PIVAP---IMKIQACRRYGATVIVEG---ADMKEAKNIALKKG-AELG-LTYINGYLSSGLSVLGYDHPD-IMAGQGTVG  169 (269)
Q Consensus        99 p~~~~---~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~-~~~~-~~~~~~~~~~~~~~~g~~n~~-~~~g~~t~~  169 (269)
                      |...+   ..|+.+|+.|||+|+.++   .+.+++...+.+.. .... .+|....     ....+..+. ..+++.+++
T Consensus       134 p~~~~~~k~~~v~~m~~~GAeVv~v~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~iG  208 (390)
T d1qopb_         134 GAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGT-----AAGPHPYPTIVREFQRMIG  208 (390)
T ss_dssp             EHHHHHHCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCS-----SCSSTTHHHHHHHTTTHHH
T ss_pred             cccccccchHHHHHHHhcCceEEEecCCchhhhHhHHHHHHHHhhhhhhhhhcccc-----ccccccccccccchhhhhc
Confidence            98655   567899999999999986   34555555554433 3333 2333330     001111222 468999999


Q ss_pred             HHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHH----HHHHcCCCC----
Q psy5622         170 LEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFS----TAIKHGKPT----  236 (269)
Q Consensus       170 ~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~----~~~~~g~~~----  236 (269)
                      .|+.+|+.     .||+||+|+|+|++++|++.+|++.        +.+++++++|.+.....    ..+..|.+.    
T Consensus       209 ~e~~~q~~~~~g~~pD~vv~~vGgGs~~~G~~~~f~~~--------~~~~~ig~ep~~~g~~~~~~~a~~~~g~~g~~~~  280 (390)
T d1qopb_         209 EETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFIND--------TSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFG  280 (390)
T ss_dssp             HHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTTC--------TTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETE
T ss_pred             chhHHHHHHHcCCccceEEecccccchhhheecccccc--------cceeEeccccccccccccccccccccCccccccc
Confidence            99988863     6999999999999999999999764        56888888886542210    011122211    


Q ss_pred             -----------CCCCcccccccccCCCCCHHHHHHHh
Q psy5622         237 -----------PVSVQPTLADGLAVPLVGWNAFETAA  262 (269)
Q Consensus       237 -----------~~~~~~t~a~gl~~~~~~~~~~~~~~  262 (269)
                                 .....++++.|+.++.+++..+...+
T Consensus       281 ~~~~~~~~~~g~~~~~~s~a~gl~~~~~~~~~~~l~~  317 (390)
T d1qopb_         281 MKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNS  317 (390)
T ss_dssp             EEEEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHH
T ss_pred             ccccccccCCCccccccccccccccccchhHHHHHHh
Confidence                       11124678899988877766544333

>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=1.7e-35  Score=272.40  Aligned_cols=194  Identities=24%  Similarity=0.219  Sum_probs=156.2

Q ss_pred             CCcccccc-ccccC-CCeEEEEeCCCCCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEE
Q psy5622          21 WFNSKKSH-LSELT-KMEIFLKKDFFQVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVM   98 (269)
Q Consensus        21 ~TPl~~~~-l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivv   98 (269)
                      +|||++++ |++.+ |++||+|+|++|||||||||++.+++..+.+.+..+.++++|+||||+++|++|+++|++|+|||
T Consensus        50 pTPLi~~~~Ls~~lgg~~Iy~K~E~lnptGS~KdR~a~~~i~~a~~~G~~~~v~~~s~Gn~g~a~A~aaa~~G~~~~i~m  129 (386)
T d1v8za1          50 PTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYM  129 (386)
T ss_dssp             SCCEEECHHHHHHHTSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCcceEhHhhHHhcCCCeEEEEeccCCCCCCccchHHHHHHHHHhhcCCceeEeecccchHHHHHHHHHHHcCCcccccc
Confidence            79999998 99877 57999999999999999999999999998777767788889999999999999999999999999


Q ss_pred             cCC---CcHHHHHHHHHcCCEEEEeCC---CHHHHHHHHHHHHhh-hCCeeecCCCCCCccccCCCCcc-hhccchhHHH
Q psy5622          99 PIV---APIMKIQACRRYGATVIVEGA---DMKEAKNIALKKGAE-LGLTYINGYLSSGLSVLGYDHPD-IMAGQGTVGL  170 (269)
Q Consensus        99 p~~---~~~~~~~~l~~~Ga~v~~~~~---~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~g~~n~~-~~~g~~t~~~  170 (269)
                      |..   ....|+.+++.|||+|+.+++   ++.++...+.+.... ....+...    ......++++. ...++.+++.
T Consensus       130 p~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  205 (386)
T d1v8za1         130 GAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLI----GSVVGPHPYPTIVRDFQSVIGR  205 (386)
T ss_dssp             EHHHHTTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECC----CSSCSSTTHHHHHHHHHHHHHH
T ss_pred             cchhhhhhHHHHHHHHhcCCeEEEecCCcchHHHHHHHHHHHHHhhhhhhhhcc----ccccCccccchhhhccchhhhh
Confidence            854   445789999999999999863   566776655554333 33322211    01111144454 3568899999


Q ss_pred             HHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHH
Q psy5622         171 EIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASF  226 (269)
Q Consensus       171 EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~  226 (269)
                      |+.+|+.     .||+||+|+|+|++++|+++++++        .+++++|+|||.+++..
T Consensus       206 Ei~~q~~~~~g~~pd~vv~~vGgG~~~~g~~~~~~~--------~~~v~iigvep~g~~~~  258 (386)
T d1v8za1         206 EAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVN--------DKKVKLVGVEAGGKGLE  258 (386)
T ss_dssp             HHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTT--------CTTSEEEEEEEEETBGG
T ss_pred             hHHHHHHHhcCCCCCEEEECCCChHHHHHHHHHhhh--------ccCceEEEEecCccccc
Confidence            9998873     689999999999999999988764        57899999999887654

>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=1.4e-31  Score=238.42  Aligned_cols=201  Identities=19%  Similarity=0.136  Sum_probs=154.9

Q ss_pred             cceeccccCCcccccc-ccccCCCeEEEEeCCCC--CCCchhhHHHHHHHHhchHhcCCc-cEEEeCCChHHHHHHHHHH
Q psy5622          13 LGFVIRDQWFNSKKSH-LSELTKMEIFLKKDFFQ--VTGSFKERGACYALLMLSEDQKKK-GVISASLGNHAQAMCYHGS   88 (269)
Q Consensus        13 ~~~~~~~~~TPl~~~~-l~~~~g~~i~~K~E~~n--ptGS~K~R~a~~~l~~~~~~~~~~-~vv~~SsGN~g~alA~~a~   88 (269)
                      +.+++.+++|||++++ |++.+|++||+|+|++|  ||||||||++.+++.++.+++... .++++|+||||.|+|++|+
T Consensus        13 p~i~l~~~~TPL~~~~~L~~~~G~~v~iK~Ed~~~~~tgS~K~R~~~~~i~~a~~~g~~~~~~~~~s~gN~g~a~A~~a~   92 (325)
T d1j0aa_          13 PRVELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVITVGAVHSNHAFVTGLAAK   92 (325)
T ss_dssp             CCCCCCCSCCCEEECHHHHHHHTSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTCSEEEEECCTTCHHHHHHHHHHH
T ss_pred             CcccCCCCCCceeEHHHhHHHHCCEEEEEecCCCCCCcchhHHHHHHHHHHHHHHCCCCeeEEEeeCcchHHHHHHHHHh
Confidence            4588999999999998 99999999999999877  999999999999999876444322 2345788999999999999


Q ss_pred             hcCCCeEEEEcCCCcHHHHHHHHHc---CCEEEEeCCCHH---HHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchh
Q psy5622          89 RLNIPVTVVMPIVAPIMKIQACRRY---GATVIVEGADMK---EAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIM  162 (269)
Q Consensus        89 ~~G~~~~ivvp~~~~~~~~~~l~~~---Ga~v~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~  162 (269)
                      .+|++|++|+|...+..+...+..+   |++++..+.+..   .....+.+...+....+...        .+++++...
T Consensus        93 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~  164 (325)
T d1j0aa_          93 KLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVIP--------PGGASPIGT  164 (325)
T ss_dssp             HTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCCSTTTHHHHHHHHHHHHTTSSCCEEEEC--------GGGCSHHHH
T ss_pred             hhcCceEEEeecccccchhhhhccccceeEEeccCcccccchHHHHHHHHHHHhhccCceeee--------cCCCccccc
Confidence            9999999999998776665555443   444443332221   11122222222223333222        126778888


Q ss_pred             ccchhHHHHHHhhcC-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHH
Q psy5622         163 AGQGTVGLEIVDQVA-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFST  228 (269)
Q Consensus       163 ~g~~t~~~EI~~ql~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~  228 (269)
                      .++.+++.|+.+|.+ .+|+||+|+|+|++++|+..+++..       ++.+++++|++........
T Consensus       165 ~~~~~~~~e~~~~~~~~~d~vv~~~G~G~~~~gi~~~~~~~-------~~~~~v~~v~~~~~~~~~~  224 (325)
T d1j0aa_         165 LGYVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSIL-------NEDIRPVGIAVGRFGEVMT  224 (325)
T ss_dssp             THHHHHHHHHHHHCCCCCSEEEEEESSSHHHHHHHHHHHHT-------TCCCEEEEEECSSCSSSHH
T ss_pred             cccchhhcccccccccccceeecccccchhhhhHHHHHHhh-------Cccccccccccccchhhhh
Confidence            999999999999987 8999999999999999999999999       9999999999998765433

>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Pseudomonas sp., strain ACP [TaxId: 306]

Probab=99.97  E-value=3e-30  Score=228.10  Aligned_cols=199  Identities=17%  Similarity=0.101  Sum_probs=151.7

Q ss_pred             cceeccccCCcccccc-ccccCC--CeEEEEeCCCCCCCch---hhHHHHHHHHhchHhcCCccE--EEeCCChHHHHHH
Q psy5622          13 LGFVIRDQWFNSKKSH-LSELTK--MEIFLKKDFFQVTGSF---KERGACYALLMLSEDQKKKGV--ISASLGNHAQAMC   84 (269)
Q Consensus        13 ~~~~~~~~~TPl~~~~-l~~~~g--~~i~~K~E~~nptGS~---K~R~a~~~l~~~~~~~~~~~v--v~~SsGN~g~alA   84 (269)
                      +.+.+++|+|||++++ |++.+|  ++||+|+|++||||||   |||++.+++.++.+.+ .+.+  +++|+||||.|+|
T Consensus         7 ~r~~l~~g~TPL~~~~~L~~~lg~~~~i~~K~E~~~ptgS~~gnK~R~~~~~i~~a~~~g-~~~v~~~~~s~gN~g~A~A   85 (338)
T d1tyza_           7 PRYPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQG-CDTLVSIGGIQSNQTRQVA   85 (338)
T ss_dssp             CCCCCSSSSCCEEECHHHHHHTTSSSEEEEEEGGGSCSSTTCCHHHHHHHHHHHHHHHTT-CCEEEEEEETTCHHHHHHH
T ss_pred             CccccCCCCCceeEhHHHHHHHCCCCEEEEEECCCCCCcccccCHHHHHHHHHHHHHHCC-CCeEEEEccCCchHHHHHH
Confidence            3478999999999998 999888  4899999999999999   9999999999886544 3443  4589999999999


Q ss_pred             HHHHhcCCCeEEEEcCCCcH--------HHHHHHHHcCCEEEEeCCCHHHH-----HHHHHHHHhhhCCeeecCCCCCCc
Q psy5622          85 YHGSRLNIPVTVVMPIVAPI--------MKIQACRRYGATVIVEGADMKEA-----KNIALKKGAELGLTYINGYLSSGL  151 (269)
Q Consensus        85 ~~a~~~G~~~~ivvp~~~~~--------~~~~~l~~~Ga~v~~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~  151 (269)
                      ++|+.+|++|+|++|...+.        .+.+.++.+|+.++.++.+.+..     .+......+.....|+.+.     
T Consensus        86 ~~a~~~g~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  160 (338)
T d1tyza_          86 AVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPA-----  160 (338)
T ss_dssp             HHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEECCCC-------CHHHHHHHHHHHTTCCEEEECG-----
T ss_pred             HHHhhccCcEEEEECCCcchhhhhhhhccccceeeeeccccccccCCcchhHHHHHHHHHhhhhhcccceeeecc-----
Confidence            99999999999999986543        45667889999999887544422     2222333333444444330     


Q ss_pred             cccCCCCcchhccchhHHHHHHhhc-----C-CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChH
Q psy5622         152 SVLGYDHPDIMAGQGTVGLEIVDQV-----A-NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCAS  225 (269)
Q Consensus       152 ~~~g~~n~~~~~g~~t~~~EI~~ql-----~-~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~  225 (269)
                          ..++....++...+.|...|.     . .||++|+|+|+|++++|+..+++..       +..++++++++..++.
T Consensus       161 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iv~~~G~G~~~~G~~~~~~~~-------~~~~~~~~~~~~~~~~  229 (338)
T d1tyza_         161 ----GCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAAD-------GRADRVIGVDASAKPA  229 (338)
T ss_dssp             ----GGTSSTTTTTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHHHHHHHTT-------TCGGGEEEEECSSCHH
T ss_pred             ----cCccCccccccccchHHHHHHHHHhcCCCccEEEEeecChhHHHHHHHHHHHH-------hhhhcccceeeccchh
Confidence                234444556666665554442     2 7999999999999999999999998       8899999999999876


Q ss_pred             HHH
Q psy5622         226 FST  228 (269)
Q Consensus       226 ~~~  228 (269)
                      ...
T Consensus       230 ~~~  232 (338)
T d1tyza_         230 QTR  232 (338)
T ss_dssp             HHH
T ss_pred             hhc
Confidence            643

>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Yeast (Hansenula saturnus) [TaxId: 4906]

Probab=99.96  E-value=1.8e-29  Score=223.97  Aligned_cols=200  Identities=17%  Similarity=0.089  Sum_probs=158.1

Q ss_pred             cceeccccCCcccccc-ccccCCC--eEEEEeCCCCCCCch---hhHHHHHHHHhchHhcCCcc--EEEeCCChHHHHHH
Q psy5622          13 LGFVIRDQWFNSKKSH-LSELTKM--EIFLKKDFFQVTGSF---KERGACYALLMLSEDQKKKG--VISASLGNHAQAMC   84 (269)
Q Consensus        13 ~~~~~~~~~TPl~~~~-l~~~~g~--~i~~K~E~~nptGS~---K~R~a~~~l~~~~~~~~~~~--vv~~SsGN~g~alA   84 (269)
                      +.+.+++|+|||++++ |++.+|+  +||+|+|++||+|||   |+|++.+++.++.+++ .+.  ++++|+||||.|+|
T Consensus         7 ~~~~l~~~~TPl~~~~~L~~~lg~~~~i~~K~E~~~p~GSf~gnK~R~~~~~i~~a~~~g-~~~i~~~~as~gN~g~a~A   85 (341)
T d1f2da_           7 AKYPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGD-YTHLVSIGGRQSNQTRMVA   85 (341)
T ss_dssp             CCCCCSSSSCCEEECHHHHHHTTTCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHSC-CSEEEEEEETTCHHHHHHH
T ss_pred             cCccCCCCCCceeEHHHHHHHHCCCCEEEEEECCCCCCCccccChHHHHHHHHHHHHHCC-CCEEEEEccCcchHHHHHH
Confidence            4478999999999998 9999985  899999999999999   9999999999876443 444  35689999999999


Q ss_pred             HHHHhcCCCeEEEEcCCCcHH-----------HHHHHHHcCCEEEEeCCCHH-----HHHHHHHHHHhhhCCeeecCCCC
Q psy5622          85 YHGSRLNIPVTVVMPIVAPIM-----------KIQACRRYGATVIVEGADMK-----EAKNIALKKGAELGLTYINGYLS  148 (269)
Q Consensus        85 ~~a~~~G~~~~ivvp~~~~~~-----------~~~~l~~~Ga~v~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~  148 (269)
                      ++|+.+|++|++|||...+..           ++..++.+|+++..++..++     ................|..+.  
T Consensus        86 ~~a~~~g~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  163 (341)
T d1f2da_          86 ALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPA--  163 (341)
T ss_dssp             HHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHHHHHHHHHHTTCCEEEECG--
T ss_pred             HHHHHhcCceEEEccCCCCHHHHHHHHHhhccceechhhccccccccCCchhhHHHHHHHHHHHHHHhhccCccccCC--
Confidence            999999999999999986643           45677889999999875333     222222333333334443331  


Q ss_pred             CCccccCCCCcchhccchhHHHHHHhhcC----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCCh
Q psy5622         149 SGLSVLGYDHPDIMAGQGTVGLEIVDQVA----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCA  224 (269)
Q Consensus       149 ~~~~~~g~~n~~~~~g~~t~~~EI~~ql~----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~  224 (269)
                           ....++....++.+.+.++.+|+.    .+|++|+|+|+|++++|+..+++..       .+.++++++++....
T Consensus       164 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~G~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~  231 (341)
T d1f2da_         164 -----GCSEHKYGGLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQY-------GRQDDVIAIDASFTS  231 (341)
T ss_dssp             -----GGTTSTTTTTHHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHGGG-------TCGGGEEEEECSSCH
T ss_pred             -----cccccccchhhehhhhHHHHHHHhhccCCceEEEEecccccchhhHHHHHHHh-------cccccccccccccch
Confidence                 113456778888888888888764    7999999999999999999999998       889999999999986


Q ss_pred             HHH
Q psy5622         225 SFS  227 (269)
Q Consensus       225 ~~~  227 (269)
                      ...
T Consensus       232 ~~~  234 (341)
T d1f2da_         232 EKT  234 (341)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            543

>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=9.4e-24  Score=194.93  Aligned_cols=209  Identities=17%  Similarity=0.187  Sum_probs=168.9

Q ss_pred             eEEEEeCCCCCCCchhhHHHHHH---HHhchHhcCCccEEEeCCChHHHHHHHHHHhc-CCCeEEEEcCC-CcHHHHHHH
Q psy5622          36 EIFLKKDFFQVTGSFKERGACYA---LLMLSEDQKKKGVISASLGNHAQAMCYHGSRL-NIPVTVVMPIV-APIMKIQAC  110 (269)
Q Consensus        36 ~i~~K~E~~nptGS~K~R~a~~~---l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~-G~~~~ivvp~~-~~~~~~~~l  110 (269)
                      ++|+...++.||+|||||++..+   +.+.. ..+..+|+++||||+|.|++.+++.. +++++|+.|++ +++.+.++|
T Consensus        92 ~~~~lELfhGPT~aFKD~a~~~~~~~~~~~~-~~~~~~Il~ATSGDTG~Aa~~a~~~~~~i~~~vl~P~g~vS~~Q~~Qm  170 (428)
T d1vb3a1          92 DVGCLELFHGPTLAFKDFGGRFMAQMLTHIA-GDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLF  170 (428)
T ss_dssp             TEEEEECCCSTTSBTHHHHHHHHHHHHHHHT-TTCCEEEEEECSSSHHHHHHHHTTTCTTEEEEEEEETTCSCHHHHHHH
T ss_pred             CceeeeeccCCCcccccchhhHHHHHHhhhc-ccccceeeecCCCCcchhHHHHHhCccccceEEEecCCCCcHHHHHHH
Confidence            68999999999999999998764   33332 34556799999999999999887766 68999999985 899999999


Q ss_pred             HHcCCEEE--EeCCCHHHHHHHHHHHHhhhCC------eeecCCCCCCccccCCCCcchhccchhHHHHHHhhcC----C
Q psy5622         111 RRYGATVI--VEGADMKEAKNIALKKGAELGL------TYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVA----N  178 (269)
Q Consensus       111 ~~~Ga~v~--~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~----~  178 (269)
                      ..+|++|.  .+++++|||++.++++..+..+      .-+|.           -|+.++.++.+..+|++.|+.    .
T Consensus       171 tt~g~nv~vi~V~G~fDDcq~lvk~~f~d~~~~~~~~l~s~NS-----------IN~~Rl~~Q~vyyf~a~~ql~~~~~~  239 (428)
T d1vb3a1         171 CTLGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNSANS-----------INISRLLAQICYYFEAVAQLPQETRN  239 (428)
T ss_dssp             HSCCTTEEEEEEESCHHHHHHHHHHGGGCHHHHHHHTEECCST-----------TSHHHHHHTTHHHHHHHTTSCTTTTT
T ss_pred             hhccCCceEEecCCChhHHHHHHHHHhhhhhhhhcCCeeeecc-----------cChhHHhhhHHHHHHHHHHhccccCC
Confidence            99999774  5779999999999998865432      22333           689999999999999999986    4


Q ss_pred             CCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCCCCcccccccccCCCCCHHHH
Q psy5622         179 IDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPVSVQPTLADGLAVPLVGWNAF  258 (269)
Q Consensus       179 ~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~  258 (269)
                      ++.++||+|+.|.+.+.+.+.+.        +-++..+.+-....+.+.+.++.|...+.+...|++.+|+++.|++  |
T Consensus       240 ~~~~~VPtGNfGni~Ag~~Ak~m--------GLPi~~~i~AtN~Ndil~~f~~tG~y~~~~~~~TlSpAMDI~~pSN--f  309 (428)
T d1vb3a1         240 QLVVSVPSGNFGDLTAGLLAKSL--------GLPVKRFIAATNVNDTVPRFLHDGQWSPKATQATLSNAMDVSQPNN--W  309 (428)
T ss_dssp             SEEEEEECSSCHHHHHHHHHHHT--------TCCCSEEEEEECSCCHHHHHHHHSCCCCCCCCCCSSGGGCCSSCTT--H
T ss_pred             ceEEeccHHHHHHHHHHHHhhhc--------CCceeeeecccccCccchhhhhCCceecccccccCchHhhhcccCC--H
Confidence            78899999999999887766653        3344434444555678889999999888888899999999999998  8


Q ss_pred             HHHhhhhc
Q psy5622         259 ETAAPLID  266 (269)
Q Consensus       259 ~~~~~~~~  266 (269)
                      +++.++++
T Consensus       310 ERl~~l~~  317 (428)
T d1vb3a1         310 PRVEELFR  317 (428)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88877664

>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=1.9e-12  Score=120.71  Aligned_cols=225  Identities=16%  Similarity=0.135  Sum_probs=156.3

Q ss_pred             CccccccccccCCCeEEEEeCCCCCCCchhhHHHHHHHHhc---hH---------hcCCccEEEeCCChHHHHHHHHHH-
Q psy5622          22 FNSKKSHLSELTKMEIFLKKDFFQVTGSFKERGACYALLML---SE---------DQKKKGVISASLGNHAQAMCYHGS-   88 (269)
Q Consensus        22 TPl~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~~---~~---------~~~~~~vv~~SsGN~g~alA~~a~-   88 (269)
                      +||.++.  ....-++|+---+|.||.+|||-++..+..-+   .+         +.+.-+|+++|||.+|.|.+.+++ 
T Consensus        96 ~pl~~~~--~~~~~~~~vlELfhGPT~aFKD~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~il~aTSGDTG~Aa~~af~~  173 (511)
T d1kl7a_          96 TPLVQNV--TGDKENLHILELFHGPTYAFKDVALQFVGNLFEYFLQRTNANLPEGEKKQITVVGATSGDTGSAAIYGLRG  173 (511)
T ss_dssp             SCEECCT--TCSSSCEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHHHTTSCSSSCCCEEEEEECSSSHHHHHHHHHTT
T ss_pred             Ccccccc--cCCCCceEEEeeccCCcccccCcchhhHHHHHHHHHHhcccccccccCceEEEEEecCCCccHHHHHHhcC
Confidence            6666532  12234799999999999999998876544322   11         123457999999999999988876 


Q ss_pred             hcCCCeEEEEcCC-CcHHHHHHHHHcCC-EE--EEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhcc
Q psy5622          89 RLNIPVTVVMPIV-APIMKIQACRRYGA-TV--IVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAG  164 (269)
Q Consensus        89 ~~G~~~~ivvp~~-~~~~~~~~l~~~Ga-~v--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g  164 (269)
                      +-+++++|+.|.+ +++.+.++|...++ .|  +-+++++|||++..+++..+....--.. +.   +++ .-|..++..
T Consensus       174 ~~~i~v~vlyP~~~vS~iQ~~Qmtt~~~~Nv~~i~v~G~fDDcq~~vk~~f~d~~~~~~~~-l~---s~N-SiNw~Rll~  248 (511)
T d1kl7a_         174 KKDVSVFILYPTGRISPIQEEQMTTVPDENVQTLSVTGTFDNCQDIVKAIFGDKEFNSKHN-VG---AVN-SINWARILA  248 (511)
T ss_dssp             CTTEEEEEEEETTSSCHHHHHHHHHCCCTTEEEEEESSCHHHHHHHHHHHHHCSSCC--CC-BC---CCC-SCCHHHHHH
T ss_pred             CCCceeEEeccCCCCchHHHHHHhhcCCceEEEEEeccChHHHHHHHHHHHhhhhhhcccc-cc---ccc-ceeehhhhh
Confidence            4589999999996 89999999998754 55  4578999999999999887654211111 00   111 146667776


Q ss_pred             chhHHHHHHhhcC-----CCCEEEEecCcchHHHHHHhHHHHHHhcCCCCCCCcEEEEEcCCCChHHHHHHHcCCCCCC-
Q psy5622         165 QGTVGLEIVDQVA-----NIDAIVVPVGGGGLIAGVAYDHPDIMAGQGTVGLEIVDQGVESDRCASFSTAIKHGKPTPV-  238 (269)
Q Consensus       165 ~~t~~~EI~~ql~-----~~d~vv~p~G~Gg~~~Gi~~~~k~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~-  238 (269)
                      |.......+-|+.     ++=.++||.|+=|.+.+-+.+ |.+       +-++.-+.|-....+.+.+.+..|..... 
T Consensus       249 QivyYf~ay~q~~~~~~~~~v~f~VPTGNfGni~Ag~~A-k~M-------GLPI~klivAtN~NdiL~rf~~tG~y~~~~  320 (511)
T d1kl7a_         249 QMTYYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGYFA-KKM-------GLPIEKLAIATNENDILDRFLKSGLYERSD  320 (511)
T ss_dssp             HHHHHHHHHHHHHSSSSCCCEEEEEECSSSHHHHHHHHH-HHH-------TCCCCCEEEEECSCCHHHHHHHHSEEECCS
T ss_pred             hHHHHHHHHHHHhhhccCCeeEEEeccCcHHHHHHHHHH-Hhc-------CCChheEEEecCCcchHHHHhcCCCCCCcC
Confidence            6666666666652     334689999995555543433 445       66674344445556799999999987543 


Q ss_pred             CCcccccccccCCCCCHHHHHHHhh
Q psy5622         239 SVQPTLADGLAVPLVGWNAFETAAP  263 (269)
Q Consensus       239 ~~~~t~a~gl~~~~~~~~~~~~~~~  263 (269)
                      +...|++.+|++..+++  |+++--
T Consensus       321 ~v~~T~SPSMDI~vsSN--fERLL~  343 (511)
T d1kl7a_         321 KVAATLSPAMDILISSN--FERLLW  343 (511)
T ss_dssp             SCCCCSCGGGCCSSCTT--HHHHHH
T ss_pred             cccCcCccHHhhhhhHH--HHHHHH
Confidence            45679999999999888  777743

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.51  E-value=0.25  Score=37.04  Aligned_cols=51  Identities=12%  Similarity=0.103  Sum_probs=39.6

Q ss_pred             CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622          67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE  120 (269)
Q Consensus        67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~  120 (269)
                      ..++|+...+|.-|...+..++.+|.+++++-+   ++.|++..+.+|++....
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~---~~~r~~~a~~~ga~~~~~   76 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTAR---SPRRLEVAKNCGADVTLV   76 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEES---CHHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccch---HHHHHHHHHHcCCcEEEe
Confidence            345666667899999999999999987665543   678889999999976554

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.56  E-value=0.3  Score=37.17  Aligned_cols=76  Identities=14%  Similarity=0.152  Sum_probs=48.6

Q ss_pred             HHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC--CCHHHHHHHHH
Q psy5622          55 ACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG--ADMKEAKNIAL  132 (269)
Q Consensus        55 a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~--~~~~~~~~~a~  132 (269)
                      ++..+.+..+-...++|+...+|..|......|+.+|.+-++++.  .++.|++.++.+||+.+...  .+..+..+...
T Consensus        16 a~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~   93 (182)
T d1vj0a2          16 AYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIA--GSPNRLKLAEEIGADLTLNRRETSVEERRKAIM   93 (182)
T ss_dssp             HHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEE--SCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccc--cccccccccccccceEEEeccccchHHHHHHHH
Confidence            444444432233456666667799999999999999986433332  26778899999999766543  34444433333

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.52  E-value=0.2  Score=37.58  Aligned_cols=63  Identities=14%  Similarity=0.196  Sum_probs=46.4

Q ss_pred             HHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622          55 ACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG  121 (269)
Q Consensus        55 a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~  121 (269)
                      +++.+.++ +-...++|+....|.-|...+..|+.+|.+++++-   .++.|++..+.+||+.....
T Consensus        16 a~~al~~~-~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~---~~~~~~~~a~~~Ga~~~i~~   78 (166)
T d1llua2          16 VYKGLKQT-NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAID---IDDAKLELARKLGASLTVNA   78 (166)
T ss_dssp             HHHHHHHH-TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHTTCSEEEET
T ss_pred             HHHHHHHh-CCCCCCEEEEeeccccHHHHHHHHHHcCCccceec---chhhHHHhhhccCccccccc
Confidence            45555554 23445667667789999999999999998766553   35788899999999876544

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=93.47  E-value=0.12  Score=39.66  Aligned_cols=67  Identities=15%  Similarity=0.065  Sum_probs=50.1

Q ss_pred             HHHHHHHHhchHhcCCcc-EEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC
Q psy5622          53 RGACYALLMLSEDQKKKG-VISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA  122 (269)
Q Consensus        53 R~a~~~l~~~~~~~~~~~-vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~  122 (269)
                      -.|+..|.+...-++.++ +|.+.+|.-|.++...|+..|.+++.++.   +++|++.++.+|++.++...
T Consensus        15 lTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~---~~~~~~~~~~~Ga~~vi~~~   82 (182)
T d1v3va2          15 LTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKIAYLKQIGFDAAFNYK   82 (182)
T ss_dssp             HHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEETT
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCC---CHHHHHHHHhhhhhhhcccc
Confidence            456666665433234455 55577799999999999999999888775   46789999999999876653

>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: PK C-terminal domain-like
family: MTH1675-like
domain: Hypothetical protein AF0103
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.53  E-value=0.28  Score=37.96  Aligned_cols=75  Identities=20%  Similarity=0.123  Sum_probs=53.5

Q ss_pred             CCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEE-------cC--CCcHHHHHHHHHcCC
Q psy5622          45 QVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVM-------PI--VAPIMKIQACRRYGA  115 (269)
Q Consensus        45 nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivv-------p~--~~~~~~~~~l~~~Ga  115 (269)
                      +|+-.+=++.+...+.++.+.+-...||.+++|.++..++-+.  .|+++++|.       |.  +.+++.++.|+..|.
T Consensus        11 ~~G~~NT~~~l~~a~~rA~Elgi~~iVvAStsG~TA~~~~e~~--~g~~lvvVth~~GF~~pg~~e~~~e~~~~L~~~G~   88 (190)
T d1vp8a_          11 KPGRENTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGA   88 (190)
T ss_dssp             SCSGGGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTC
T ss_pred             CCCcccHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHh--cCCeEEEEecccCCCCCCcccCCHHHHHHHHHcCC
Confidence            4666666777777778775433345566677799987766655  488887776       21  367899999999999


Q ss_pred             EEEEeC
Q psy5622         116 TVIVEG  121 (269)
Q Consensus       116 ~v~~~~  121 (269)
                      +|+...
T Consensus        89 ~V~t~t   94 (190)
T d1vp8a_          89 KIVRQS   94 (190)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            998754

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=92.46  E-value=0.2  Score=37.92  Aligned_cols=50  Identities=16%  Similarity=0.206  Sum_probs=39.8

Q ss_pred             CccE-EEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622          68 KKGV-ISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE  120 (269)
Q Consensus        68 ~~~v-v~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~  120 (269)
                      .++| |.+.+|..|..+...|+..|.++++...   ++.|++.++.+||+.++-
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~---s~~k~~~~~~lGa~~vi~   79 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---TAQKAQSALKAGAWQVIN   79 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEccccccchHHHHHHHHhCCeEeeccc---chHHHHHHHhcCCeEEEE
Confidence            4555 5567888999999999999998777665   567888899999986654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.83  E-value=0.63  Score=37.44  Aligned_cols=76  Identities=11%  Similarity=0.072  Sum_probs=52.6

Q ss_pred             cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCC-cHHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhCC--eee
Q psy5622          70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVA-PIMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELGL--TYI  143 (269)
Q Consensus        70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~~--~~~  143 (269)
                      -+|+..++--|.++|....+.|.++++.-.... -+.-.+.++..|.+++.+  + .+.++..+..++..++.|.  ..+
T Consensus         4 alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilV   83 (255)
T d1gega_           4 ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVIV   83 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             EEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccEEE
Confidence            478888899999999999999998766543221 122345677888888755  3 5666777777777777663  445


Q ss_pred             cC
Q psy5622         144 NG  145 (269)
Q Consensus       144 ~~  145 (269)
                      +.
T Consensus        84 nn   85 (255)
T d1gega_          84 NN   85 (255)
T ss_dssp             EC
T ss_pred             ec
Confidence            44

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.56  E-value=0.32  Score=36.22  Aligned_cols=65  Identities=15%  Similarity=0.159  Sum_probs=47.4

Q ss_pred             HHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCC
Q psy5622          55 ACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGAD  123 (269)
Q Consensus        55 a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~  123 (269)
                      ++..+..+. -.+.++|+...+|.-|...+..++..|.+++++   +.++.|++.++.+|++.+....+
T Consensus        16 a~~al~~~~-~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~---~~~~~r~~~~k~~Ga~~~~~~~~   80 (168)
T d1rjwa2          16 TYKALKVTG-AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAV---DIGDEKLELAKELGADLVVNPLK   80 (168)
T ss_dssp             HHHHHHHHT-CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEE---CSCHHHHHHHHHTTCSEEECTTT
T ss_pred             HHHHHHHhC-CCCCCEEEEeecccchhhhhHHHhcCCCeEecc---CCCHHHhhhhhhcCcceeccccc
Confidence            445555442 344566666677999999999999999986554   34678899999999998876543

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=91.52  E-value=0.17  Score=33.71  Aligned_cols=45  Identities=16%  Similarity=0.095  Sum_probs=36.0

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGA  115 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga  115 (269)
                      .+.+|...+|.-|....-.|+.+|.+++....   +++|.+.++.+||
T Consensus        33 ~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~---s~~k~~~~~~lGA   77 (77)
T d1o8ca2          33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSG---RESTHEYLKSLGA   77 (77)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCCEEEEES---CGGGHHHHHHHTE
T ss_pred             CcEEEEeCCCcHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHHCCC
Confidence            44567788899999988999999999888776   3467778888886

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.47  E-value=1  Score=33.61  Aligned_cols=53  Identities=11%  Similarity=0.164  Sum_probs=42.3

Q ss_pred             CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622          67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG  121 (269)
Q Consensus        67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~  121 (269)
                      ..++|+....|.-|...+..++..|.+-++++.  ..+.|++..+.+||+.+...
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d--~~~~rl~~a~~~Ga~~~~~~   78 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTD--LSATRLSKAKEIGADLVLQI   78 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEecc--CCHHHHHHHHHhCCcccccc
Confidence            456677778899999999999999997555554  35778889999999887665

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.90  E-value=0.2  Score=38.00  Aligned_cols=62  Identities=18%  Similarity=0.108  Sum_probs=44.2

Q ss_pred             HHHHHHhchHhcCCccEEE-eCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622          55 ACYALLMLSEDQKKKGVIS-ASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE  120 (269)
Q Consensus        55 a~~~l~~~~~~~~~~~vv~-~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~  120 (269)
                      |++.+.+. .-++.++|+. ..+|.-|.+....|+..|.++++++..   +.|++.++.+||+.+..
T Consensus        16 A~~al~~~-~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~---~~~~~~~~~lGa~~~i~   78 (171)
T d1iz0a2          16 AYLALKRA-QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASR---PEKLALPLALGAEEAAT   78 (171)
T ss_dssp             HHHHHHHT-TCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESS---GGGSHHHHHTTCSEEEE
T ss_pred             HHHHHHHh-CCCCCCEEEEEeccccchhhhhhhhccccccccccccc---ccccccccccccceeee
Confidence            55556553 2344566665 557999999999999999987776653   45777888899976653

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=90.86  E-value=0.67  Score=37.83  Aligned_cols=72  Identities=15%  Similarity=0.036  Sum_probs=46.6

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCC--cHHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVA--PIMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~  139 (269)
                      +..||+..+|.-|.++|..-.+.|.++++.-....  .....+....+|.+++.+  + .+.++..+......++.+
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g  102 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAG  102 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhcc
Confidence            44688888889999999999999998887654321  122233445677777654  3 455555555555555554

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=90.75  E-value=0.59  Score=35.42  Aligned_cols=53  Identities=11%  Similarity=-0.038  Sum_probs=41.6

Q ss_pred             hcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622          65 DQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV  119 (269)
Q Consensus        65 ~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~  119 (269)
                      -...++|+....|--|......|+.+|.+.++.+..  ++.|++..+.+||+-++
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~--~~~kl~~a~~lGa~~~i   77 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGT--HKDKFPKAIELGATECL   77 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS--CGGGHHHHHHTTCSEEE
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCC--hHHHHHHHHHcCCcEEE
Confidence            345667777778999999999999999887777754  35678888889987665

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=90.71  E-value=0.25  Score=38.04  Aligned_cols=67  Identities=16%  Similarity=0.089  Sum_probs=47.0

Q ss_pred             HHHHHHhchHhcCCcc-EEE-eCCChHHHHHHHHHHhcCCCeEEEEcCC-CcHHHHHHHHHcCCEEEEeC
Q psy5622          55 ACYALLMLSEDQKKKG-VIS-ASLGNHAQAMCYHGSRLNIPVTVVMPIV-APIMKIQACRRYGATVIVEG  121 (269)
Q Consensus        55 a~~~l~~~~~~~~~~~-vv~-~SsGN~g~alA~~a~~~G~~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~  121 (269)
                      |++.|.+...-...++ +|. +.+|..|.+....|+.+|.++++++... -.+.+...++.+||+.++..
T Consensus        16 A~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~   85 (189)
T d1gu7a2          16 AYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITE   85 (189)
T ss_dssp             HHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEH
T ss_pred             HHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEec
Confidence            4455544322223344 443 5678889999999999999999988664 44667888999999887754

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.65  E-value=0.51  Score=35.62  Aligned_cols=62  Identities=10%  Similarity=0.122  Sum_probs=44.7

Q ss_pred             HHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622          56 CYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV  119 (269)
Q Consensus        56 ~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~  119 (269)
                      +..+.+..+-...++|+....|--|...+..|+.+|.+.++++..  ++.|++..+.+|+.-++
T Consensus        17 ~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~--~~~k~~~a~~~Ga~~~i   78 (174)
T d1f8fa2          17 AGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI--VESRLELAKQLGATHVI   78 (174)
T ss_dssp             HHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES--CHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeecc--HHHHHHHHHHcCCeEEE
Confidence            334443323345666777778999999999999999988777653  46788889999985544

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.34  E-value=0.89  Score=35.11  Aligned_cols=65  Identities=12%  Similarity=0.039  Sum_probs=47.3

Q ss_pred             HHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC
Q psy5622          55 ACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA  122 (269)
Q Consensus        55 a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~  122 (269)
                      +++.+..+ +-...++|+....|--|...+..++..|...++++..  ++.|++..+.+|++.+....
T Consensus        14 a~~a~~~a-~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~--~~~rl~~a~~~Ga~~~~~~~   78 (195)
T d1kola2          14 GYHGAVTA-GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDL--NPARLAHAKAQGFEIADLSL   78 (195)
T ss_dssp             HHHHHHHT-TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHHTTCEEEETTS
T ss_pred             HHHHHHHh-CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecc--cchhhHhhhhccccEEEeCC
Confidence            34445443 2344667777778999988888899999876666643  57899999999999877553

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.12  E-value=0.79  Score=36.90  Aligned_cols=73  Identities=12%  Similarity=0.064  Sum_probs=51.4

Q ss_pred             CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCC-cHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhC
Q psy5622          67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVA-PIMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~  139 (269)
                      ++..+|+..++--|.++|...+..|.++++.-.... -+...+.++..|.+++.+.   .+.+++.+..++..++.+
T Consensus        11 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g   87 (255)
T d1fmca_          11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLG   87 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            355688888889999999999999998777553211 1233456778888887554   456676777777777766

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.10  E-value=0.7  Score=35.07  Aligned_cols=53  Identities=11%  Similarity=0.089  Sum_probs=40.3

Q ss_pred             cCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622          66 QKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE  120 (269)
Q Consensus        66 ~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~  120 (269)
                      +..++|+....|-.|.....+|+.+|..-+|.+..  ++.|++..+.+||+.++-
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~--~~~kl~~Ak~~GA~~~in   80 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDL--NKDKFEKAMAVGATECIS   80 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHHTCSEEEC
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecC--cHHHHHHHHhcCCcEEEC
Confidence            44677888888999999999999999866666543  356788888888876553

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.03  E-value=0.85  Score=34.17  Aligned_cols=51  Identities=12%  Similarity=0.114  Sum_probs=38.9

Q ss_pred             CCccEEEe-CCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622          67 KKKGVISA-SLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE  120 (269)
Q Consensus        67 ~~~~vv~~-SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~  120 (269)
                      +.++|+.. .+|..|.+....|+.+|.++++.+.   ++.|++.++.+|++-++-
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~---~~~~~~~~~~~Ga~~vi~   79 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAG---TEEGQKIVLQNGAHEVFN   79 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccc---cccccccccccCcccccc
Confidence            34555554 4689999988999999999877775   467888999999965543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.86  E-value=0.21  Score=37.68  Aligned_cols=62  Identities=15%  Similarity=0.055  Sum_probs=43.7

Q ss_pred             HHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622          55 ACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE  120 (269)
Q Consensus        55 a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~  120 (269)
                      ++..+.++. -...++|+....|..|...+..|+.+|.+++++..   ++.|++..+.+||+-...
T Consensus        16 a~~al~~~~-~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~---~~~k~~~a~~lGa~~~i~   77 (168)
T d1piwa2          16 VYSPLVRNG-CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISR---SSRKREDAMKMGADHYIA   77 (168)
T ss_dssp             HHHHHHHTT-CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEES---SSTTHHHHHHHTCSEEEE
T ss_pred             HHHHHHHhC-cCCCCEEEEECCCCcchhHHHHhhhcccccccccc---chhHHHHhhccCCcEEee
Confidence            445555442 33456666667799999999999999998776544   345788889999975543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=89.38  E-value=0.72  Score=34.37  Aligned_cols=64  Identities=13%  Similarity=0.119  Sum_probs=44.5

Q ss_pred             HHHHHHhchHhcCCccEEEeC-CChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622          55 ACYALLMLSEDQKKKGVISAS-LGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG  121 (269)
Q Consensus        55 a~~~l~~~~~~~~~~~vv~~S-sGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~  121 (269)
                      ++..+.++. -...++|+... +|..|...+..++..|...++++..  ++.|++.++.+|++.+...
T Consensus        16 a~~al~~~~-~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~--~~~~~~~~~~~Ga~~~i~~   80 (170)
T d1jvba2          16 TYRAVRKAS-LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV--REEAVEAAKRAGADYVINA   80 (170)
T ss_dssp             HHHHHHHTT-CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES--SHHHHHHHHHHTCSEEEET
T ss_pred             HHHHHHHhC-CCCCCEEEEEeccccceeeeeeccccccccccccccc--chhhHHHHHHcCCceeecc
Confidence            555665542 33345555544 7999999999999999866665553  3678889999999766544

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=89.33  E-value=0.97  Score=36.50  Aligned_cols=69  Identities=13%  Similarity=0.052  Sum_probs=43.7

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHH----HHHHcCC-EEEEeC-CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQ----ACRRYGA-TVIVEG-ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~----~l~~~Ga-~v~~~~-~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..++--|.++|......|.++++.-. +  +.+++    .+...|. ..+.++ .+.++..+...+..++.+
T Consensus         7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r-~--~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADI-A--DDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHG   81 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEES-C--HHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEEC-C--HHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            45688888888999999999999998766543 2  22222    2333332 223345 566676666667666665

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.21  E-value=0.68  Score=34.83  Aligned_cols=64  Identities=13%  Similarity=0.075  Sum_probs=45.6

Q ss_pred             HHHHHHhchHhcCCccEEE-eCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622          55 ACYALLMLSEDQKKKGVIS-ASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG  121 (269)
Q Consensus        55 a~~~l~~~~~~~~~~~vv~-~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~  121 (269)
                      |++.+.+..+-++.++|+. +.+|..|..+.-.|+.+|.++++.+.   ++.|.+.++.+|++.+...
T Consensus        13 A~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~---~~~~~~~l~~~Ga~~vi~~   77 (183)
T d1pqwa_          13 AWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG---SDAKREMLSRLGVEYVGDS   77 (183)
T ss_dssp             HHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHTTCCSEEEET
T ss_pred             HHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeec---ccccccccccccccccccC
Confidence            4445444322233456665 55799999999999999999888775   4567889999999876543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=89.06  E-value=1.3  Score=35.55  Aligned_cols=79  Identities=10%  Similarity=-0.014  Sum_probs=53.4

Q ss_pred             CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCC-cHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhCC--
Q psy5622          67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVA-PIMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAELGL--  140 (269)
Q Consensus        67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~~--  140 (269)
                      ++..+|+..++.-|.++|....+.|.++++.-.... -+.-.+.++..|.+++.+.   .+.++..+..++..++.+.  
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   84 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKID   84 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence            345688888889999999999999998766543211 1223446677888886553   4566777777777777663  


Q ss_pred             eeecC
Q psy5622         141 TYING  145 (269)
Q Consensus       141 ~~~~~  145 (269)
                      ..++.
T Consensus        85 ilVnn   89 (260)
T d1zema1          85 FLFNN   89 (260)
T ss_dssp             EEEEC
T ss_pred             eehhh
Confidence            44444

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=88.92  E-value=0.79  Score=34.18  Aligned_cols=65  Identities=15%  Similarity=0.120  Sum_probs=45.5

Q ss_pred             HHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCCC
Q psy5622          55 ACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGAD  123 (269)
Q Consensus        55 a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~  123 (269)
                      ++..+.++ +-+..++|+....|.-|...+..|+.+|.+.+++..   ++.|++..+.+||+.+....+
T Consensus        19 ay~al~~~-~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~---~~~~~~~a~~lGad~~i~~~~   83 (168)
T d1uufa2          19 TYSPLRHW-QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTT---SEAKREAAKALGADEVVNSRN   83 (168)
T ss_dssp             HHHHHHHT-TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEES---SGGGHHHHHHHTCSEEEETTC
T ss_pred             HHHHHHHh-CCCCCCEEEEeccchHHHHHHHHhhcccccchhhcc---chhHHHHHhccCCcEEEECch
Confidence            34555543 234456666667799999999999999998876544   234667888999987765443

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.82  E-value=1.3  Score=35.52  Aligned_cols=77  Identities=12%  Similarity=0.112  Sum_probs=49.9

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHcC--CEEEEe--C-CCHHHHHHHHHHHHhhhC-
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKIQACRRYG--ATVIVE--G-ADMKEAKNIALKKGAELG-  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~G--a~v~~~--~-~~~~~~~~~a~~~~~~~~-  139 (269)
                      +..+|+..++--|.++|....+.|.++++.-. +..  +.-.+.++..|  .+++.+  + .+.++..+...+..++.+ 
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r-~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g~   89 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGLKVVGCAR-TVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSG   89 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEES-CHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC-CHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            45688888888999999999999998766543 321  11233455544  576644  4 556666677777777766 


Q ss_pred             -CeeecC
Q psy5622         140 -LTYING  145 (269)
Q Consensus       140 -~~~~~~  145 (269)
                       ..+++.
T Consensus        90 iD~lVnn   96 (257)
T d1xg5a_          90 VDICINN   96 (257)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEec
Confidence             344444

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=88.33  E-value=0.99  Score=34.08  Aligned_cols=63  Identities=13%  Similarity=0.045  Sum_probs=44.3

Q ss_pred             HHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622          56 CYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG  121 (269)
Q Consensus        56 ~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~  121 (269)
                      ++.+..+ +-+..++|+....|-.|...+.+|+.+|.+-++++..  ++.|++..+.+||+.++..
T Consensus        17 ~~a~~~a-~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~--~~~r~~~a~~lGa~~~i~~   79 (174)
T d1jqba2          17 FHGAELA-DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS--RPICVEAAKFYGATDILNY   79 (174)
T ss_dssp             HHHHHHT-TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECC--CHHHHHHHHHHTCSEEECG
T ss_pred             HHHHHHh-CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccc--hhhhHHHHHhhCccccccc
Confidence            3444443 2334566666778999999999999999865555543  5788899999999765433

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=87.86  E-value=1.1  Score=36.03  Aligned_cols=73  Identities=12%  Similarity=0.055  Sum_probs=54.0

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhCC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAELGL  140 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~~  140 (269)
                      +.-+|+..++--|.++|....+.|.++++....+..  +...+.++.+|.+++.+.   .+.+++.+...+..++.+.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   84 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGG   84 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcCC
Confidence            445777888888999999999999998876655433  234667888999887654   4566777777777777764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=87.82  E-value=1.5  Score=33.05  Aligned_cols=53  Identities=13%  Similarity=0.035  Sum_probs=41.6

Q ss_pred             cCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622          66 QKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE  120 (269)
Q Consensus        66 ~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~  120 (269)
                      ...++|+....|--|...+..++.+|.+.+++....  +.|++..+.+||+.+..
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~--~~r~~~a~~~Ga~~~i~   79 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDIN--GEKFPKAKALGATDCLN   79 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC--GGGHHHHHHTTCSEEEC
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccc--hHHHHHHHHhCCCcccC
Confidence            345677777889999999999999998877776543  45788888899876653

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=87.76  E-value=1.1  Score=35.81  Aligned_cols=75  Identities=11%  Similarity=-0.001  Sum_probs=46.2

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHH-H--HcCCEEEE--eC-CCHHHHHHHHHHHHhhhCC-
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQAC-R--RYGATVIV--EG-ADMKEAKNIALKKGAELGL-  140 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l-~--~~Ga~v~~--~~-~~~~~~~~~a~~~~~~~~~-  140 (269)
                      +..+|+..++--|.++|....+.|.++++.-..   ..+.+.+ +  ..+.++..  ++ .+.++..+..++..++.|. 
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~---~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i   83 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRH---SDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPV   83 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC---HHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCc
Confidence            456788888888999999999999987665432   2222221 1  12334543  44 4666666677777776653 


Q ss_pred             -eeecC
Q psy5622         141 -TYING  145 (269)
Q Consensus       141 -~~~~~  145 (269)
                       ..++.
T Consensus        84 DiLVnn   89 (251)
T d1zk4a1          84 STLVNN   89 (251)
T ss_dssp             CEEEEC
T ss_pred             eEEEec
Confidence             44444

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=87.55  E-value=2.7  Score=31.02  Aligned_cols=63  Identities=14%  Similarity=0.076  Sum_probs=39.7

Q ss_pred             HHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622          55 ACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV  119 (269)
Q Consensus        55 a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~  119 (269)
                      ++..+.+..+-+..++|+....|--|...+..++.+|-..++.+...  +.|++..+.+||+-.+
T Consensus        16 ay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~--~~rl~~a~~~GAd~~i   78 (175)
T d1cdoa2          16 GFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLN--PDKFEKAKVFGATDFV   78 (175)
T ss_dssp             HHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC--GGGHHHHHHTTCCEEE
T ss_pred             HHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecch--HHHHHHHHHcCCcEEE
Confidence            33444332223345667666666677777777778887766666433  5577888889986654

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.39  E-value=1.2  Score=35.88  Aligned_cols=72  Identities=11%  Similarity=0.011  Sum_probs=42.4

Q ss_pred             cEEEeCCChHHHHHHHHHH-hcCCCeEEEEcCCC-cHHHHHHHHHcCCEEE--EeC-CCHHHHHHHHHHHHhhhCCe
Q psy5622          70 GVISASLGNHAQAMCYHGS-RLNIPVTVVMPIVA-PIMKIQACRRYGATVI--VEG-ADMKEAKNIALKKGAELGLT  141 (269)
Q Consensus        70 ~vv~~SsGN~g~alA~~a~-~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~--~~~-~~~~~~~~~a~~~~~~~~~~  141 (269)
                      -|||..++--|.++|..-. +.|.++++...... -+.-.+.++..|.++.  .++ .+.++..+.+.++.++.+..
T Consensus         6 AlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~i   82 (275)
T d1wmaa1           6 ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL   82 (275)
T ss_dssp             EEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred             EEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCCc
Confidence            3555555555666665533 44776666554321 1233456677776655  445 57777777788887777643

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.07  E-value=0.24  Score=33.06  Aligned_cols=36  Identities=25%  Similarity=0.168  Sum_probs=31.1

Q ss_pred             ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcH
Q psy5622          69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPI  104 (269)
Q Consensus        69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~  104 (269)
                      ++|-.-.+|..|+-++.+|+++|++++++-|+..++
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~p   37 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPA   37 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCGG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCCc
Confidence            356778899999999999999999999999876544

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=86.49  E-value=1.5  Score=35.07  Aligned_cols=70  Identities=13%  Similarity=0.069  Sum_probs=53.8

Q ss_pred             CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHhhhC
Q psy5622          67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG-ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~-~~~~~~~~~a~~~~~~~~  139 (269)
                      ++..+|+.+++.-|.++|..-+..|.++++.-...   .+.+..+..+++.+.++ .+.++..+...+..++.+
T Consensus         5 GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~---~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   75 (248)
T d2d1ya1           5 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP---EGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALG   75 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST---THHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcC
Confidence            34568889999999999999999999876654332   24556777899988888 677777777777777766

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=86.40  E-value=1.9  Score=34.31  Aligned_cols=71  Identities=13%  Similarity=0.102  Sum_probs=53.1

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+.+++.-|.++|....+.|.++++.-... .+.....++.+|.+++.+.   .+.++..+..++..++.+
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~-~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G   79 (247)
T d2ew8a1           6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVP-APEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFG   79 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC-CHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc-hHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            4568888889999999999999999877754333 3555567888998887554   566677777777777765

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=86.33  E-value=0.69  Score=35.30  Aligned_cols=50  Identities=14%  Similarity=0.102  Sum_probs=40.3

Q ss_pred             ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622          69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG  121 (269)
Q Consensus        69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~  121 (269)
                      ..+|.+.+|..|.+..-.|+.+|.+++.++.+   +.|.+.++.+||+.+...
T Consensus        34 ~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~---~~k~~~~~~lGad~vi~~   83 (177)
T d1o89a2          34 EIVVTGASGGVGSTAVALLHKLGYQVVAVSGR---ESTHEYLKSLGASRVLPR   83 (177)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCCEEEEESC---GGGHHHHHHHTEEEEEEG
T ss_pred             cEEEEEccccchHHHHHHHHHcCCCeEEEecc---hhHHHHHHhhcccccccc
Confidence            45777888999999999999999999988773   456677888999887653

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=86.22  E-value=2.4  Score=34.87  Aligned_cols=55  Identities=9%  Similarity=0.052  Sum_probs=40.9

Q ss_pred             CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622          67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG  121 (269)
Q Consensus        67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~  121 (269)
                      +++.+|+..+|.-|.+++......|.++++++.+..+.........-|++++..+
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD   57 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGP   57 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESC
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEee
Confidence            4566888999999999999998999999999875544433333333477777654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=85.85  E-value=2.1  Score=31.81  Aligned_cols=65  Identities=14%  Similarity=0.107  Sum_probs=45.8

Q ss_pred             HHHHHHhchH-hcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeC
Q psy5622          55 ACYALLMLSE-DQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEG  121 (269)
Q Consensus        55 a~~~l~~~~~-~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~  121 (269)
                      ++..+.+... -...+.|+....|..|...+..++.+|...++++..  ++.|++.++.+|++.+...
T Consensus        19 a~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~--~~~k~~~~~~~ga~~~i~~   84 (172)
T d1h2ba2          19 AYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKLKLAERLGADHVVDA   84 (172)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHHHHHHHTTCSEEEET
T ss_pred             HHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccc--hhHHHHHHhhcccceeecC
Confidence            4555554322 234567777788999999999999999877666543  4678999999998655443

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=85.40  E-value=1.5  Score=35.28  Aligned_cols=72  Identities=10%  Similarity=-0.013  Sum_probs=52.4

Q ss_pred             CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhh
Q psy5622          67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAEL  138 (269)
Q Consensus        67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~  138 (269)
                      ++..+|+..++.-|.++|...++.|.++++.-..... +...+.++..|.+++..  + .+.++..+..++..++.
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF   81 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHh
Confidence            3456888999999999999999999997776643221 23456788888888654  4 56666666667777765

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=85.29  E-value=1.8  Score=34.76  Aligned_cols=72  Identities=17%  Similarity=0.114  Sum_probs=52.4

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCC--cHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVA--PIMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..++--|.++|....+.|.++++.-....  .+...+.++.+|.+++.+.   .+.++..+..++..++.+
T Consensus         8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   84 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            45577788888899999999999998877654432  2334667888999987654   456676677777777765

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.20  E-value=1.7  Score=34.78  Aligned_cols=72  Identities=11%  Similarity=0.152  Sum_probs=49.9

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCC--CcHHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIV--APIMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~--~~~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..++.-|.++|....+.|.++++.-...  ..+...+..+.+|.+++.+  + .+.++..+..++..++.+
T Consensus         6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFG   82 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4568888889999999999999999876654322  1122233456788888654  4 456676677777777766

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=84.94  E-value=3  Score=33.17  Aligned_cols=69  Identities=10%  Similarity=0.003  Sum_probs=44.9

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHH-HHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQ-ACRRYGATVIVEG---ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~-~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..++--|.++|......|.++++. ..  ++.+++ ..+.+|.+.+.+.   .+.++..+..++..++.+
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~~~-~~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   79 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGAKVAFS-DI--NEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLG   79 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEE-CS--CHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEE-EC--CHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            456777888888999999999999986553 22  333333 3445677776654   355565666666666655

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.77  E-value=2.8  Score=33.51  Aligned_cols=71  Identities=7%  Similarity=-0.015  Sum_probs=46.3

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhh
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAEL  138 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~  138 (269)
                      +..+|+..++.-|.++|....+.|.++++.-..... +...+.++..+.+++.+  + .+.++..+..++..++.
T Consensus         9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMF   83 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHh
Confidence            456788888888999999999999987765432211 22344556667777654  3 45556666666666664

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=84.34  E-value=1.7  Score=34.82  Aligned_cols=73  Identities=12%  Similarity=0.112  Sum_probs=52.0

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcH--HHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhCC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPI--MKIQACRRYGATVIVEG---ADMKEAKNIALKKGAELGL  140 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~~  140 (269)
                      +.-+|+..++.-|.++|..-.+.|.++++.-......  ...+..+.+|.+++.+.   .+.++..+..++..++.+.
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   87 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP   87 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            4457888889999999999999999977766543322  23344567898886554   4666777777777777664

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=84.33  E-value=1.6  Score=35.13  Aligned_cols=72  Identities=11%  Similarity=0.076  Sum_probs=53.0

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc--HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP--IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..++.-|.++|....+.|.++++.-.....  +.-.+.++..|.+++.+  + .+.+++.+..++..++.+
T Consensus        19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   95 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG   95 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence            456788888888999999999999998876554322  23455678889888765  3 566777777777777765

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.25  E-value=1.7  Score=34.79  Aligned_cols=71  Identities=18%  Similarity=0.204  Sum_probs=33.0

Q ss_pred             HHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCC-eeecCCCCCCccccCCCCcchhccchhHHHHHHhhcCCCCEEEEe
Q psy5622         107 IQACRRYGATVIVEGADMKEAKNIALKKGAELGL-TYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIVVP  185 (269)
Q Consensus       107 ~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~~~d~vv~p  185 (269)
                      .+.+...|++|+.++.+.+...+.++++.++.+. .....           -|-........+..++.++++.+|.+|..
T Consensus        22 a~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~-----------~Dv~~~~~v~~~~~~~~~~~g~iDiLVnn   90 (251)
T d1vl8a_          22 AQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFR-----------CDVSNYEEVKKLLEAVKEKFGKLDTVVNA   90 (251)
T ss_dssp             HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEE-----------CCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             HHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEE-----------ccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            4444555666666655544444444555444331 11111           01111223345555555666666666655


Q ss_pred             cCc
Q psy5622         186 VGG  188 (269)
Q Consensus       186 ~G~  188 (269)
                      +|.
T Consensus        91 AG~   93 (251)
T d1vl8a_          91 AGI   93 (251)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            553

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=83.92  E-value=1.8  Score=34.36  Aligned_cols=70  Identities=14%  Similarity=0.118  Sum_probs=50.5

Q ss_pred             cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCC--cHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhC
Q psy5622          70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVA--PIMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~  139 (269)
                      -+|+..++.-|+++|..-.+.|.++++....+.  .+...+.++.+|.+++.+.   .+.++..+..++..++.+
T Consensus         4 ~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   78 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWG   78 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            367777888899999999999999887654432  2334567788999987664   456666667777777765

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.58  E-value=3.5  Score=32.75  Aligned_cols=70  Identities=10%  Similarity=-0.022  Sum_probs=48.8

Q ss_pred             CCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEE--EEeC-CCHHHHHHHHHHHHhhhC
Q psy5622          67 KKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATV--IVEG-ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        67 ~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v--~~~~-~~~~~~~~~a~~~~~~~~  139 (269)
                      ++..+|+..++.-|.++|....+.|.++++.-   .++.+++.+..-+.++  +.++ .+.+++.+..++..++.+
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga~V~i~~---r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICD---KDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFG   78 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEE---CCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcC
Confidence            34568888889999999999999999877753   2345555555433333  3445 577777777777777765

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=83.45  E-value=0.87  Score=33.94  Aligned_cols=63  Identities=14%  Similarity=0.060  Sum_probs=43.3

Q ss_pred             HHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622          55 ACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV  119 (269)
Q Consensus        55 a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~  119 (269)
                      ++..+.+..+-+..++|+....|-.|......|+.+|.+.++.+..  ++.|++..+.+||+-.+
T Consensus        16 ay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~--~~~k~~~ak~lGa~~~i   78 (176)
T d2fzwa2          16 GYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI--NKDKFARAKEFGATECI   78 (176)
T ss_dssp             HHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS--CGGGHHHHHHHTCSEEE
T ss_pred             HHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcc--cHHHHHHHHHhCCcEEE
Confidence            4444443222344667776666777888888899999988877754  45677788889987654

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=83.34  E-value=2.3  Score=29.75  Aligned_cols=35  Identities=17%  Similarity=0.203  Sum_probs=29.9

Q ss_pred             ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc
Q psy5622          69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP  103 (269)
Q Consensus        69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~  103 (269)
                      .+|-.-.+|..|+-+|.+|+++|++++++-|..-+
T Consensus        12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            45777789999999999999999999998877533

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=83.29  E-value=2  Score=34.18  Aligned_cols=72  Identities=8%  Similarity=0.040  Sum_probs=51.5

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCC-cHHHHHHHHHcCCEEEEeC---CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVA-PIMKIQACRRYGATVIVEG---ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~---~~~~~~~~~a~~~~~~~~  139 (269)
                      +.-+|+..++.-|.++|...++.|.++++.-.... -+...+.++.+|.+++.+.   .+.++..+..++..++.+
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            44588988999999999999999999766543211 1223456778898887554   566777777777777766

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=83.23  E-value=4.9  Score=29.58  Aligned_cols=52  Identities=15%  Similarity=0.083  Sum_probs=37.4

Q ss_pred             cCCccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEE
Q psy5622          66 QKKKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIV  119 (269)
Q Consensus        66 ~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~  119 (269)
                      +..++|+....|--|.+.+..++.+|...++.+..+  +.|++..+.+|+.-..
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~--~~k~~~a~~~Ga~~~i   78 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN--KDKFAKAKEVGATECV   78 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC--GGGHHHHHHTTCSEEE
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCc--HHHHHHHHHhCCeeEE
Confidence            346677777777788888888999998777776544  4567777778865443

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=83.21  E-value=2.7  Score=33.46  Aligned_cols=74  Identities=9%  Similarity=0.008  Sum_probs=50.5

Q ss_pred             HHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHhhhCCeeecCCCCCCccccCCCCcchhccchhHHHHHHhhcCCCCEEE
Q psy5622         104 IMKIQACRRYGATVIVEGADMKEAKNIALKKGAELGLTYINGYLSSGLSVLGYDHPDIMAGQGTVGLEIVDQVANIDAIV  183 (269)
Q Consensus       104 ~~~~~~l~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~g~~t~~~EI~~ql~~~d~vv  183 (269)
                      ..-.+.+...|++|+.++.+.+...+.++++.+..+.....+          . |....+....+..++.++++++|.+|
T Consensus        16 ~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~----------~-Dvs~~~~v~~~~~~~~~~~g~iDilV   84 (257)
T d2rhca1          16 LEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRT----------C-DVRSVPEIEALVAAVVERYGPVDVLV   84 (257)
T ss_dssp             HHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEE----------C-CTTCHHHHHHHHHHHHHHTCSCSEEE
T ss_pred             HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE----------e-ecCCHHHHHHHHHHHHHHhCCCCEEE
Confidence            344566778999999998877776666676655433333222          1 22223455678888889999999999


Q ss_pred             EecCc
Q psy5622         184 VPVGG  188 (269)
Q Consensus       184 ~p~G~  188 (269)
                      ..+|.
T Consensus        85 nnAG~   89 (257)
T d2rhca1          85 NNAGR   89 (257)
T ss_dssp             ECCCC
T ss_pred             ecccc
Confidence            98875

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.20  E-value=4.2  Score=33.16  Aligned_cols=72  Identities=13%  Similarity=0.093  Sum_probs=47.2

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHH-----HcCCEEEEeC---CCHHHHHHHHHHHHhhh
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACR-----RYGATVIVEG---ADMKEAKNIALKKGAEL  138 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~-----~~Ga~v~~~~---~~~~~~~~~a~~~~~~~  138 (269)
                      +..+|+..++.-|.++|....+.|.++++.-..... ....+.++     ..|.+++.+.   .+.++..+..++..++.
T Consensus        13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   92 (297)
T d1yxma1          13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDTF   92 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            456888888899999999999999987765432111 11222333     2577777554   45666666677766666


Q ss_pred             C
Q psy5622         139 G  139 (269)
Q Consensus       139 ~  139 (269)
                      +
T Consensus        93 G   93 (297)
T d1yxma1          93 G   93 (297)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.82  E-value=2.9  Score=33.15  Aligned_cols=72  Identities=17%  Similarity=0.127  Sum_probs=49.4

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhhC
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAELG  139 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~  139 (269)
                      +..+|+..++--|.++|...++.|.++++.-..... +.-.+.++..|.+++.+  + .+.+++.+..++..++.+
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g   83 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG   83 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            445788888889999999999999997775543211 12234567788887644  4 566666666666666666

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=82.40  E-value=1.5  Score=31.02  Aligned_cols=50  Identities=18%  Similarity=0.201  Sum_probs=39.6

Q ss_pred             cEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEeCC
Q psy5622          70 GVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVEGA  122 (269)
Q Consensus        70 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~  122 (269)
                      .++....|+.|+.+|-.....|.+++++=.   ++.+.+.++..|..++..+.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~---d~~~~~~~~~~~~~~~~gd~   51 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDI---NEEKVNAYASYATHAVIANA   51 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEES---CHHHHHHTTTTCSEEEECCT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecC---cHHHHHHHHHhCCcceeeec
Confidence            355668899999999999999999888744   56777788888888776553

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=81.73  E-value=2.5  Score=33.43  Aligned_cols=76  Identities=17%  Similarity=0.139  Sum_probs=49.8

Q ss_pred             cEEEeCCChHHHHHHHHHHhcCCCe------EEEEcCCCc--HHHHHHHHHcCCEEEEe--C-CCHHHHHHHHHHHHhhh
Q psy5622          70 GVISASLGNHAQAMCYHGSRLNIPV------TVVMPIVAP--IMKIQACRRYGATVIVE--G-ADMKEAKNIALKKGAEL  138 (269)
Q Consensus        70 ~vv~~SsGN~g~alA~~a~~~G~~~------~ivvp~~~~--~~~~~~l~~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~  138 (269)
                      -+|+..++--|+++|...++.|.++      ++....+..  +.-.+.++..|.++..+  + .+.++..+..++..++.
T Consensus         4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVERY   83 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred             EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4678778888999999988889872      344444322  12344567789888765  4 56667777777777776


Q ss_pred             CC--eeecC
Q psy5622         139 GL--TYING  145 (269)
Q Consensus       139 ~~--~~~~~  145 (269)
                      +.  ..++.
T Consensus        84 g~iDilvnn   92 (240)
T d2bd0a1          84 GHIDCLVNN   92 (240)
T ss_dssp             SCCSEEEEC
T ss_pred             CCcceeecc
Confidence            63  44444

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=81.23  E-value=1.2  Score=33.51  Aligned_cols=49  Identities=8%  Similarity=0.057  Sum_probs=39.8

Q ss_pred             ccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHcCCEEEEe
Q psy5622          69 KGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAPIMKIQACRRYGATVIVE  120 (269)
Q Consensus        69 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~  120 (269)
                      .-+|.+.+|--|.+..-.|+.+|.+++..+.+.   .|.+.++.+|++.+..
T Consensus        26 ~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~---~k~~~~~~lGad~vi~   74 (167)
T d1tt7a2          26 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNR---EAADYLKQLGASEVIS   74 (167)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSS---STHHHHHHHTCSEEEE
T ss_pred             EEEEeCCcchHHHHHHHHHHHcCCceEEEecCH---HHHHHHHhhcccceEe
Confidence            456667789999999999999999998888743   4677888899988753

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=80.70  E-value=6.3  Score=31.23  Aligned_cols=78  Identities=12%  Similarity=0.063  Sum_probs=50.4

Q ss_pred             CccEEEeCCChHHHHHHHHHHhcCCCeEEEEcCCCc-HHHHHHHH--HcCCEEEEe--C-CCHHHHHHHHHHHHhhhCC-
Q psy5622          68 KKGVISASLGNHAQAMCYHGSRLNIPVTVVMPIVAP-IMKIQACR--RYGATVIVE--G-ADMKEAKNIALKKGAELGL-  140 (269)
Q Consensus        68 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~--~~Ga~v~~~--~-~~~~~~~~~a~~~~~~~~~-  140 (269)
                      +..+|+..++.-|.++|....+.|.++++.-..... +.....+.  ..+.+++.+  + .+.+++.+...+..++.+. 
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~i   84 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFGRI   84 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhCCC
Confidence            456888888899999999999999987665432211 11122222  356677654  4 5667777777777777763 


Q ss_pred             -eeecC
Q psy5622         141 -TYING  145 (269)
Q Consensus       141 -~~~~~  145 (269)
                       ..++.
T Consensus        85 DiLVnn   90 (258)
T d1iy8a_          85 DGFFNN   90 (258)
T ss_dssp             SEEEEC
T ss_pred             CEEEEC
Confidence             44544

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.44  E-value=7.2  Score=30.67  Aligned_cols=22  Identities=9%  Similarity=0.264  Sum_probs=11.0

Q ss_pred             hhHHHHHHhhcCCCCEEEEecC
Q psy5622         166 GTVGLEIVDQVANIDAIVVPVG  187 (269)
Q Consensus       166 ~t~~~EI~~ql~~~d~vv~p~G  187 (269)
                      ..+..++.++++.+|.+|..+|
T Consensus        72 ~~~~~~i~~~~g~idilinnag   93 (244)
T d1yb1a_          72 YSSAKKVKAEIGDVSILVNNAG   93 (244)
T ss_dssp             HHHHHHHHHHTCCCSEEEECCC
T ss_pred             HHHHHHHHHHcCCCceeEeecc
Confidence            3444444455555555555554

>d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: PK C-terminal domain-like
family: MTH1675-like
domain: Hypothetical protein MTH1675
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=80.12  E-value=1.7  Score=33.21  Aligned_cols=74  Identities=12%  Similarity=-0.071  Sum_probs=48.1

Q ss_pred             CCCCchhhHHHHHHHHhchHhcCCccEEEeCCChHHHHHHHHHHhcCCCeEEEE-------cC--CCcHHHHHHHHHcCC
Q psy5622          45 QVTGSFKERGACYALLMLSEDQKKKGVISASLGNHAQAMCYHGSRLNIPVTVVM-------PI--VAPIMKIQACRRYGA  115 (269)
Q Consensus        45 nptGS~K~R~a~~~l~~~~~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ivv-------p~--~~~~~~~~~l~~~Ga  115 (269)
                      +|+-.+=++.+...+.++.+.+-...||.+|+|.++..++-+   +.-++++|.       |.  ..+++.++.|+..|.
T Consensus        10 ~~G~~NT~~~l~~a~~ra~elgi~~iVvAStsG~TA~~~~e~---~~~~lvvVth~~GF~~pg~~e~~~e~~~~L~~~G~   86 (186)
T d1t57a_          10 EPGKENTERVLELVGERADQLGIRNFVVASVSGETALRLSEM---VEGNIVSVTHHAGFREKGQLELEDEARDALLERGV   86 (186)
T ss_dssp             SCSGGGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHTT---CCSEEEEECCCTTSSSTTCCSSCHHHHHHHHHHTC
T ss_pred             CCCcccHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHh---cCCCEEEEecccCCCCCCCCccCHHHHHHHHHcCC
Confidence            456666677777777777543334556667779997655333   333544443       11  256888999999999


Q ss_pred             EEEEeC
Q psy5622         116 TVIVEG  121 (269)
Q Consensus       116 ~v~~~~  121 (269)
                      +|+...
T Consensus        87 ~V~t~t   92 (186)
T d1t57a_          87 NVYAGS   92 (186)
T ss_dssp             EEECCS
T ss_pred             EEEEec
Confidence            998755