Psyllid ID: psy5660

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
Protein Sequence
MEKHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKLATSGKGDLKSFSDLEPNFPEITLRPVHTDDNDRLVWPVLFLYPEYRITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNGKPQRVPTTSTLGEVLTNPKYVIQAGTPGFSILVADSKEEAQFIKDCLS
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccccccccccccccccccccccccccccccccEEEEEEEEccccccccHHccccccccHHHHHHHHccccccccccccccccccEEEEEcccccEEEccccccHHHHHccccEEEEccccEEEEEEcccHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccEccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccccccccccHccccccccccccccccccccccEEEEEEEEcccccccHHHHHccccccHHHHHHHHcccccccccccccccccEEEEEEEccccEEEEcccccHHHHHccccEEEEcccEEEEEEEcccHHHHHHHHHccc
Coil and Loop (DISEMBL)
mekhpffmskfpgegeemspLVEGlqqlkydplentpeeLATTYkdegnfnfkcnKYRNAIINYTEglkikcadndvnaqlynnrAASNFFLKNYRSCLTDCQIAlklkpdypkvKLRAAQCLFHLKKFEDCTHLCDELlkenptdstviDLRTSCINKHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKLatsgkgdlksfsdlepnfpeitlrpvhtddndrlvwpvlflypeyritdfVQEFHEDVTFDSMLEEmfsespgwdedrkyvpgrlsiyyqdpngkpqrvpttstlgevltnpkyviqagtpgfSILVADSKEEAQFIKDCLS
Flexible Loop (DISEMBL)
mekhpffmskfpgegeEMSPLVEGLQQLKYDPLENTPEELATtykdegnfnfKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLkenptdstvidlRTSCINKHKEILRNerkqaqqvkkeekekervLQIIrerkiklatsgkgdlksfsdlepNFPEItlrpvhtddndRLVWPVLFLYPEYRITDFVQEFHEDVTFDSMLEEMFSespgwdedrkYVPGRLSIyyqdpngkpqrvpTTSTLGEVLTNPKYVIQAGTPGFSILVADSKEEAQFIKDCLS
Low Complexity Region (SEG)
MEKHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNerkqaqqvkkeekekervLQIIRERKIKLATSGKGDLKSFSDLEPNFPEITLRPVHTDDNDRLVWPVLFLYPEYRITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNGKPQRVPTTSTLGEVLTNPKYVIQAGTPGFSILVADSKEEAQFIKDCLS
Disordered region (IsUnstruct)
****************************************ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH*************************QIIR***********************FPEITLRPVHTDDNDRLVWPVLFLYPEYRITDFVQEFHEDVTFDSMLEEMFS***GWDEDRKYVPGRLSIYYQ*************TLGEVLTNPKYVIQAGTPGFSILVAD*************
Disordered Region (DISOPRED)
*EKHPFFMSKFP***********GL**L***************YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN***************************************************************HTDDNDRLVWPVLFLYPEYRITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNGKPQRVPTTSTLGEVLTNPKYVIQAGTPGFSILVADSKEEAQFIKDCLS
Disordered Region (DISEMBL)
MEKHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNE***************RVLQIIRERKIKLATSGKGDLKSFSDLEPNFPEITLRPVHTDDNDRLVWPVLFLYPEYRITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNGKPQRVPTTSTLGEVLTNPKYVIQAGTPGFSILVADSKEEAQFIKDCLS
Disordered Region (DISPRO)
**KHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKLATSGK***KSFSDLEPNFPEITLRPVHTDDNDRLVWPVLFLYPEYRITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNGKPQRVPTTSTLGEVLTNPKYVIQAGTPGFSILVADSKEEAQFIKDCLS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEKHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKIKLATSGKGDLKSFSDLEPNFPEITLRPVHTDDNDRLVWPVLFLYPEYRITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNGKPQRVPTTSTLGEVLTNPKYVIQAGTPGFSILVADSKEEAQFIKDCLS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	337	2.2.26 [Sep-21-2011]
O95801	387	Tetratricopeptide repeat	yes	N/A	0.946	0.824	0.410	1e-61
Q5EA11	388	Tetratricopeptide repeat	yes	N/A	0.952	0.827	0.408	2e-61
Q8R3H9	386	Tetratricopeptide repeat	yes	N/A	0.952	0.831	0.402	4e-59
Q54M20	397	Tetratricopeptide repeat	yes	N/A	0.866	0.735	0.311	3e-28
O13754	358	Hsp70/Hsp90 co-chaperone	yes	N/A	0.908	0.854	0.278	2e-27
P33313	385	Hsp70/Hsp90 co-chaperone	yes	N/A	0.732	0.641	0.304	9e-24
Q54IP0	539	DnaJ homolog subfamily C	no	N/A	0.406	0.254	0.309	3e-09
Q84JR9	682	TPR repeat-containing thi	no	N/A	0.338	0.167	0.344	3e-09
Q54DA8	564	Protein STIP1 homolog OS=	no	N/A	0.317	0.189	0.324	5e-09
Q9SIN1	691	Inactive TPR repeat-conta	no	N/A	0.379	0.185	0.294	1e-08

>sp|O95801|TTC4_HUMAN Tetratricopeptide repeat protein 4 OS=Homo sapiens GN=TTC4 PE=1 SV=3

 Score =  237 bits (604), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 139/339 (41%), Positives = 193/339 (56%), Gaps = 20/339 (5%)

Query: 1   MEKHPFFMSKFPGEGE-EMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRN 59
            EK P FMS+ P E +   +P +  LQ + +D  E +PEE A TYKDEGN  FK   Y+ 
Sbjct: 39  FEKVPLFMSRAPSEIDPRENPDLACLQSIIFDE-ERSPEEQAKTYKDEGNDYFKEKDYKK 97

Query: 60  AIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119
           A+I+YTEGLK KCAD D+NA LY NRAA+ ++L N+RS L D   A KLKP + K  +R 
Sbjct: 98  AVISYTEGLKKKCADPDLNAVLYTNRAAAQYYLGNFRSALNDVTAARKLKPCHLKAIIRG 157

Query: 120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEK 179
           A C   LK F +  + CDE L+ +  +  ++++R       +   R+ RK   + KKE  
Sbjct: 158 ALCHLELKHFAEAVNWCDEGLQIDAKEKKLLEMRAKADKLKRIEQRDVRKANLKEKKERN 217

Query: 180 EKERVLQIIRERKIKL----------ATSGKGD--LKSFSDLEPNFPEITLRPVHTDDND 227
           + E +LQ I+ R I+L          A+ G G+  L   S   P+   ++L     D   
Sbjct: 218 QNEALLQAIKARNIRLSEAACEDEDSASEGLGELFLDGLSTENPHGARLSL-----DGQG 272

Query: 228 RLVWPVLFLYPEYRITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDP 287
           RL WPVLFLYPEY  +DF+  FHED  F   L  MF E+P WD ++KY P  L +Y++D 
Sbjct: 273 RLSWPVLFLYPEYAQSDFISAFHEDSRFIDHLMVMFGETPSWDLEQKYCPDNLEVYFEDE 332

Query: 288 N-GKPQRVPTTSTLGEVLTNPKYVIQAGTPGFSILVADS 325
           +  +  RVP  STL +VL + +Y ++A TP F + V  S
Sbjct: 333 DRAELYRVPAKSTLLQVLQHQRYFVKALTPAFLVCVGSS 371

Homo sapiens (taxid: 9606)

>sp|Q5EA11|TTC4_BOVIN Tetratricopeptide repeat protein 4 OS=Bos taurus GN=TTC4 PE=2 SV=2

 Score =  236 bits (602), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 138/338 (40%), Positives = 193/338 (57%), Gaps = 17/338 (5%)

Query: 1   MEKHPFFMSKFPGEGEEM-SPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRN 59
            EK P FM   P E + + +P +  LQ + +D  E +PE+ A TYKDEGN  FK   Y+ 
Sbjct: 39  FEKIPLFMKNSPSEIDPLENPDLACLQSIIFDE-ERSPEDQARTYKDEGNDYFKEKDYKK 97

Query: 60  AIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119
           A+I+YTEGLK KCAD D+NA LY NRAA+ ++L N+RS L D   A KLKP + K  +R 
Sbjct: 98  AVISYTEGLKKKCADPDLNAVLYTNRAAAQYYLGNFRSSLNDVTAARKLKPCHLKAIIRG 157

Query: 120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEK 179
           A C   LK + +  + CDE L+ + T+  ++DLR       +   R+ RK   + KK++ 
Sbjct: 158 ASCHLELKNYVEAVNWCDEGLQIDATEKKLLDLRAKADKLKRTEQRDVRKAKLKEKKQQD 217

Query: 180 EKERVLQIIRERKIKLATSGKG-DLKSFSDLEPNFPEITLRPVHT----------DDNDR 228
           + E +LQ I+ R I+L     G D  S S+      E+ L  + +          DD  R
Sbjct: 218 QNEALLQAIKARNIRLVAEAAGEDEDSASE---GLSELVLYGLSSENPCGARLGVDDQGR 274

Query: 229 LVWPVLFLYPEYRITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPN 288
           L WPVLFLYPEY  +D V  FHED  F   L  MF E+P WD ++KY P  L +Y++D +
Sbjct: 275 LSWPVLFLYPEYAQSDLVSAFHEDSRFIDHLMVMFGETPSWDLEQKYCPDNLEVYFEDED 334

Query: 289 -GKPQRVPTTSTLGEVLTNPKYVIQAGTPGFSILVADS 325
             +   VP +STL +VL +P+Y ++A TP F + V  S
Sbjct: 335 RAELYCVPPSSTLLQVLQHPRYFVKALTPTFLVCVGSS 372

Bos taurus (taxid: 9913)

>sp|Q8R3H9|TTC4_MOUSE Tetratricopeptide repeat protein 4 OS=Mus musculus GN=Ttc4 PE=2 SV=1

 Score =  228 bits (582), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 136/338 (40%), Positives = 191/338 (56%), Gaps = 17/338 (5%)

Query: 1   MEKHPFFMSKFPGEGE-EMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRN 59
            +K P FM K P E + E  P +  LQ + +D  +  PEE A TYKDEGN  FK   Y+ 
Sbjct: 39  FDKIPLFMKKAPSEIDPEEFPDLACLQSMIFDD-DRYPEEQAKTYKDEGNDYFKEKDYKK 97

Query: 60  AIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119
           A+++Y+EGLK KCAD D+NA LY NRAA+ ++L N RS L D   A KLKP + K  +R 
Sbjct: 98  AVLSYSEGLKKKCADPDLNAVLYTNRAAAQYYLGNVRSSLNDVLAAKKLKPGHLKAIIRG 157

Query: 120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEK 179
           A C   LK F +  + CDE L+ +  +  ++++R       +   R+ RK   + KKE+ 
Sbjct: 158 ALCHLELKHFAEAVNWCDEGLQIDAKEKKLLEIRAKADKLKRMEERDLRKAKLKEKKEQH 217

Query: 180 EKERVLQIIRERKIKLATSGKGDLKSFSDLEPNFP-EITLRPVHT----------DDNDR 228
           + E +LQ I+ R I+L +   G+ +   D   N P EI L  + +          DD  R
Sbjct: 218 QNEALLQAIKARNIRLVSESAGEDE---DSASNGPAEILLDGLSSENPYGARLSIDDQGR 274

Query: 229 LVWPVLFLYPEYRITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPN 288
           L WPVLFLYPEY  +DF+  FHED  F   L  MFSE+P WD + KY P  L +Y++D +
Sbjct: 275 LSWPVLFLYPEYAQSDFISAFHEDTRFIDHLMAMFSEAPSWDSEHKYHPENLEVYFEDED 334

Query: 289 -GKPQRVPTTSTLGEVLTNPKYVIQAGTPGFSILVADS 325
             +  +V   STL +VL +P+  ++A TP F + V  S
Sbjct: 335 RAELYQVSPDSTLLQVLQHPRCCVKALTPAFLVCVGSS 372

Mus musculus (taxid: 10090)

>sp|Q54M20|TTC4_DICDI Tetratricopeptide repeat protein 4 homolog OS=Dictyostelium discoideum GN=ttc4 PE=3 SV=1

 Score =  126 bits (316), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 154/331 (46%), Gaps = 39/331 (11%)

Query: 5   PFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYR--NAII 62
           P FM + P E      L    Q L  D    TPEE A T+K+ GN  F+  K R  +A+ 
Sbjct: 58  PIFMQELPEEPSSNQYLA-AFQSLSNDC---TPEERAETFKNLGNDYFREGKSRFNDALY 113

Query: 63  NYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQC 122
            Y + L +KC D   N+   +NRAA N  L NY   + DC ++++  P   K   R A+ 
Sbjct: 114 YYNKALSVKCNDMTKNSIYLSNRAAINMELGNYGLVIKDCTVSVEFNPLNMKAYSRMARA 173

Query: 123 LFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKEK- 181
              L K++D    CD  L   PT+    DL T        I  N  K+ Q +KK E++K 
Sbjct: 174 QLQLSKYQDSIKTCDLGLSHEPTNK---DLST--------IRENANKKLQDIKKREQDKI 222

Query: 182 ---ERVLQIIRERKIKLATSGKGDLKSFSDLEPNFPEITLRPVHTDDNDRLVWPVLFLYP 238
               ++ Q  +    KL    K  L         +   + R V  D N+ + +PV+FLYP
Sbjct: 223 DKENQLKQQQQLLATKLYEKNKYKLGHQIFDMSQYTYQSDRKVTIDQNNDVHFPVVFLYP 282

Query: 239 EYRITDFVQEFHEDVTFDSMLEEMF-SESPG---WDEDRKYVPGRLSIYYQDPNGKP--- 291
           E+  +DF+ +F ED TF   L+ MF  E+P    WD  ++Y   R+ +Y++    KP   
Sbjct: 283 EFGKSDFIMDFQEDHTFGDHLQMMFPPENPEFAPWDTKKEYTMDRIEVYFETNWTKPILS 342

Query: 292 -----------QRVPTTSTLGEVLTNPKYVI 311
                       RV  T+ + +V+++P Y+I
Sbjct: 343 DIKIKEIEKKWIRVKHTTDIAKVISHPTYII 373

Dictyostelium discoideum (taxid: 44689)

>sp|O13754|CNS1_SCHPO Hsp70/Hsp90 co-chaperone cns1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cns1 PE=3 SV=1

 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 149/327 (45%), Gaps = 21/327 (6%)

Query: 1   MEKHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNA 60
           + K PFFM      G+E    V+ L  LK    E  P E+A  +++ GN  F   +Y++A
Sbjct: 25  LNKVPFFMQSLEDVGDESENNVQ-LDALKALAYEGEPHEVAQNFREHGNECFASKRYKDA 83

Query: 61  IINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120
              YT+ L  KC D D+    Y+NRAA N   +NYR  L DC   L+    + K   R+A
Sbjct: 84  EEFYTKALAQKCGDKDIEIACYSNRAACNLLFENYRQVLNDCAQVLQRDSTHAKAYYRSA 143

Query: 121 QCLFHLKKFE---DCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKE 177
           + L  LK+++   +C  LC  +   +P D  ++ L        KE+    +K++   +K 
Sbjct: 144 KALVALKRYDEAKECIRLCSLV---HPNDPAILALS-------KEL----QKKSDDFEKR 189

Query: 178 EKEKERVLQ--IIRERKIKLATSGKGDLKSFSDLEPNFPEITLRPVHTDD-NDRLVWPVL 234
           E EK+RV Q  +I  + + LA   +      ++  P+  +  +     DD    L +P +
Sbjct: 190 ESEKKRVAQEKVIAAKTVLLALQERHIKTKTTEHPPDLGDAMISLSTFDDPKSELFFPTI 249

Query: 235 FLYPEYRITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNGKPQRV 294
            LYP    +DFV    E+ T   +L+ +F     WD  + Y P  L ++         +V
Sbjct: 250 LLYPLVYQSDFVPSVSENCTPLELLKTVFQSPAPWDVHQLYNPDSLDVFATTDTLGLIKV 309

Query: 295 PTTSTLGEVLTNPKYVIQAGTPGFSIL 321
                + + LT+PK  +  G     ++
Sbjct: 310 GKNVPILKALTHPKVTLIDGLVQLHVV 336

Co-chaperone that binds to the molecular chaperones Hsp90 and Hsp70. Stimulates Hsp70 ATPase activity, but not Hsp90 ATPase activity. Involved in only a subset of Hsp90 functions.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P33313|CNS1_YEAST Hsp70/Hsp90 co-chaperone CNS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CNS1 PE=1 SV=1

 Score =  111 bits (277), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 133/266 (50%), Gaps = 19/266 (7%)

Query: 1   MEKHPFFMSKFP---GEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKY 57
           M + PFFM+K     G G E   L E L+ L Y   E  P E+A  +K +GN  +K  ++
Sbjct: 44  MNRMPFFMTKLDETDGAGGENVEL-EALKALAY---EGEPHEIAENFKKQGNELYKAKRF 99

Query: 58  RNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL 117
           ++A   Y++GL ++C D  +N  LY NRAA    LKNYR C+ DC  AL + P   K   
Sbjct: 100 KDARELYSKGLAVECEDKSINESLYANRAACELELKNYRRCIEDCSKALTINPKNVKCYY 159

Query: 118 RAAQCLFHLKKFEDCTHLCDELLKE-NPTDSTVIDLRTSCINKHKEILRNERKQAQQVKK 176
           R ++  F L K E+         +  +P + +++++ +    K +E+   E KQ ++ ++
Sbjct: 160 RTSKAFFQLNKLEEAKSAATFANQRIDPENKSILNMLSVIDRKEQELKAKEEKQQREAQE 219

Query: 177 EEKEKERVLQIIRERKIKLATSGKGDLKSFSDLE-PNFPEITLR-PVHTDDNDRLVWPVL 234
            E +K  +   +  R I        ++K+ S +E  N  +I L  P+  D   +L++P L
Sbjct: 220 RENKKIMLESAMTLRNIT-------NIKTHSPVELLNEGKIRLEDPM--DFESQLIYPAL 270

Query: 235 FLYPEYRITDFVQEFHEDVTFDSMLE 260
            +YP     DFV E  E  T   +++
Sbjct: 271 IMYPTQDEFDFVGEVSELTTVQELVD 296

Co-chaperone that binds to the molecular chaperones Hsp90 (HSC82 and HSP82) and Hsp70 (SSA1). Stimulates SSA1 ATPase activity, but not Hsp90 ATPase activity. Involved in only a subset of Hsp90 functions.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q54IP0|DNJC7_DICDI DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 45  KDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQI 104
           K EGN  F+   Y+ A  ++TE L I      +N+QLY+NRAA+   L      + DC  
Sbjct: 239 KKEGNEYFQSKNYQAAYDSFTEALSIDPKLETMNSQLYSNRAAALVHLNRISEAINDCTS 298

Query: 105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVI-DLRTSCINKHKEI 163
           A+ + P+Y K  +R AQC    + +ED     ++    +P +  +  +++ + I  HK+ 
Sbjct: 299 AVTIDPNYGKAYIRRAQCQMKQENYEDAVRDYEKAQSLDPENGELQRNIKEAKI-AHKKS 357

Query: 164 LRNERKQAQQVKKEEKEKE 182
           LR +  +   V KE  E E
Sbjct: 358 LRKDYYKILGVSKEAGETE 376

Dictyostelium discoideum (taxid: 44689)

>sp|Q84JR9|TTL4_ARATH TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis thaliana GN=TTL4 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 8/122 (6%)

Query: 45  KDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQI 104
           +  GN  F   +Y  A + Y +GLK+    +  N+ LY NRAA  F L  +   + DC  
Sbjct: 453 RTRGNELFSSGRYSEASVAYGDGLKL----DAFNSVLYCNRAACWFKLGMWEKSVDDCNQ 508

Query: 105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVID----LRTSCINKH 160
           AL+++P Y K  LR A     L ++ED     + L KE P DS V +     R +  NK 
Sbjct: 509 ALRIQPSYTKALLRRAASYGKLGRWEDAVRDYEVLRKELPGDSEVAESLQRARNALSNKS 568

Query: 161 KE 162
           +E
Sbjct: 569 EE 570

Involved in osmotic and salt stress tolerance. May play a role in the control of meristematic cell size during osmotic stress.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54DA8|STIP1_DICDI Protein STIP1 homolog OS=Dictyostelium discoideum GN=sti1 PE=3 SV=1

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 4/111 (3%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
           AT +K++GN  F    Y +A+  + + +++    +  N  LY+NR+AS   L      LT
Sbjct: 8   ATEFKNQGNAAFSSKDYNSAVKCFDQAIEL----DPSNHILYSNRSASLLALDKNEDALT 63

Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVID 151
           D + A++LKPD+ K  LR    L+ L +FE+     +  LK +PT+  + D
Sbjct: 64  DAKKAIELKPDWSKGYLRETNALYKLGRFEEAEKSAEAGLKIDPTNQQLED 114

Dictyostelium discoideum (taxid: 44689)

>sp|Q9SIN1|TTL3_ARATH Inactive TPR repeat-containing thioredoxin TTL3 OS=Arabidopsis thaliana GN=TTL3 PE=1 SV=2

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 8/136 (5%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
           ++    +  GN  F   ++  A + Y +GLK     +D N+ LY NRAA  + L  +   
Sbjct: 456 KMVVRARTRGNELFSSGRFSEACVAYGDGLK----QDDSNSVLYCNRAACWYKLGLWEKS 511

Query: 99  LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158
           + DC  ALK +P Y K  LR A     L ++ED     + L +E P DS V +     + 
Sbjct: 512 VEDCNHALKSQPSYIKALLRRAASYGKLGRWEDAVKDYEFLRRELPGDSEVAE----SLE 567

Query: 159 KHKEILRNERKQAQQV 174
           + K +L N  ++++ +
Sbjct: 568 RAKTVLMNRSQESKSL 583

Involved in osmotic and salt stress tolerance. May play a role in the control of meristematic cell size during osmotic stress. May function as an adaptator protein for BRL2 and may be required for signaling affecting leaf vascular tissue pattern formation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
322788600	391	hypothetical protein SINV_08149 [Solenop	0.976	0.841	0.485	2e-90
340715789	389	PREDICTED: tetratricopeptide repeat prot	0.982	0.850	0.485	1e-88
332023273	389	Tetratricopeptide repeat protein 4 [Acro	0.985	0.853	0.474	2e-88
328790964	387	PREDICTED: tetratricopeptide repeat prot	0.985	0.857	0.462	1e-86
383862259	385	PREDICTED: tetratricopeptide repeat prot	0.991	0.867	0.474	2e-86
307204929	387	Tetratricopeptide repeat protein 4 [Harp	0.976	0.850	0.465	3e-81
350418023	390	PREDICTED: tetratricopeptide repeat prot	0.985	0.851	0.453	2e-79
307177367	754	Tetratricopeptide repeat protein 4 [Camp	0.908	0.405	0.480	4e-79
321465321	389	hypothetical protein DAPPUDRAFT_306258 [	0.985	0.853	0.482	5e-78
357617887	631	putative Cyclophilin seven suppressor [D	0.973	0.519	0.436	1e-71

>gi|322788600|gb|EFZ14227.1| hypothetical protein SINV_08149 [Solenopsis invicta]

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 163/336 (48%), Positives = 226/336 (67%), Gaps = 7/336 (2%)

Query: 1   MEKHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNA 60
           MEKHPFFM K P  G+E+SPL+EGLQQLKY   ENTPEELA  YK++GNFN+K  KYR A
Sbjct: 56  MEKHPFFMKKPPEPGDELSPLMEGLQQLKYGEDENTPEELANNYKEDGNFNYKYKKYRLA 115

Query: 61  IINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120
           I++YTEG++ KC DND+ AQLYNNRAA++F L+NYRSCL DC++ALK KP YPK   RAA
Sbjct: 116 ILSYTEGIRTKCKDNDLMAQLYNNRAAAHFMLQNYRSCLNDCKLALKFKPQYPKALSRAA 175

Query: 121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKE 180
            C FH+K ++ C  LCD+ L+ +PTD T++ L++  +   + + R++RKQ +  KK +KE
Sbjct: 176 TCSFHIKDYDQCIDLCDQFLEHSPTDKTILKLKSDAVIARERLRRDKRKQEKAEKKLDKE 235

Query: 181 KERVLQIIRERKIKLATSGKGDLKSFSDLEPNFPEITLRPVHTDDNDRLVWPVLFLYPEY 240
             R+L++I ++ I L  +         DLEP  PEI    VH D+ +RLVWPV+ +YPE 
Sbjct: 236 DVRLLEMISQKGISLELTDDKQKLELRDLEPQVPEIAQSRVHFDEKNRLVWPVMIVYPET 295

Query: 241 RITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNGKPQRVPTTS-- 298
           +  DF+Q FHED      L E+F E P WD   +Y    +++Y++   GK +R    +  
Sbjct: 296 QQIDFIQNFHEDTLLIEQLIELFEEPPEWDTKHRYTVENINVYFE---GKYKRSVHKADI 352

Query: 299 --TLGEVLTNPKYVIQAGTPGFSILVADSKEEAQFI 332
             TLGE+L + ++VI+ GTP F +LV  S+ E +F+
Sbjct: 353 QLTLGEILQDKQFVIRGGTPAFLLLVKSSEAEKRFL 388

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715789|ref|XP_003396391.1| PREDICTED: tetratricopeptide repeat protein 4-like [Bombus terrestris]

 Score =  332 bits (851), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 162/334 (48%), Positives = 225/334 (67%), Gaps = 3/334 (0%)

Query: 1   MEKHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNA 60
           MEKHPFFM K P  GEE+SPL+EGLQQLKY   ENTPEELA  YK++GNFNFK   YR  
Sbjct: 53  MEKHPFFMKKTPEPGEELSPLMEGLQQLKYGEDENTPEELANNYKEDGNFNFKYKNYRLG 112

Query: 61  IINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120
           I++YTEG++ KC D D+ AQLYNNRAA++F LKNYRS L DC++AL+LKP Y KV  RAA
Sbjct: 113 ILSYTEGIRTKCKDIDLMAQLYNNRAAAHFMLKNYRSSLNDCKLALRLKPKYIKVLNRAA 172

Query: 121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKE 180
            C FH+K +E C   CD LL E+PTD  ++ L++  + + + + R++RKQ +  K   K+
Sbjct: 173 TCCFHIKDYEQCIDFCDRLLDESPTDKIMLYLKSQAVVEGERLKRDKRKQDRLEKNLNKK 232

Query: 181 KERVLQIIRERKIKL-ATSGKGDLKSFSDLEPNFPEITLRPVHTDDNDRLVWPVLFLYPE 239
           +E +L II+E+ I L    GK +L +  DLEP  PE+     H D  ++L+WPVL LYPE
Sbjct: 233 EEELLNIIKEKGINLEVIEGKRNL-NLKDLEPQIPEMAQCSFHLDAQNKLIWPVLILYPE 291

Query: 240 YRITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNG-KPQRVPTTS 298
            + TDF+Q FHED      LE++F++ P WD  R+Y P  +++Y++D +     +V    
Sbjct: 292 TKQTDFIQNFHEDTLLIEQLEQLFNDPPEWDSHRRYTPENINVYFEDKDKCSLHKVNVHQ 351

Query: 299 TLGEVLTNPKYVIQAGTPGFSILVADSKEEAQFI 332
           +LG++L + +++++ GTP F I V  SK E  F+
Sbjct: 352 SLGQILQHERFIVRGGTPMFLIFVKSSKAEEGFL 385

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023273|gb|EGI63527.1| Tetratricopeptide repeat protein 4 [Acromyrmex echinatior]

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 158/333 (47%), Positives = 220/333 (66%), Gaps = 1/333 (0%)

Query: 1   MEKHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNA 60
           MEKHPFFM K P  G+E+SPL+EGLQQLKY   ENTPEELA  YK++GNFN+K  KYR A
Sbjct: 54  MEKHPFFMKKPPEPGDELSPLMEGLQQLKYGEDENTPEELANNYKEDGNFNYKYKKYRLA 113

Query: 61  IINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120
           I++YT G+K KC D+D+ AQLYNNRAA++F L+NYRSCL DC++ALK KP YPK   RAA
Sbjct: 114 ILSYTTGIKTKCKDDDLMAQLYNNRAAAHFMLQNYRSCLNDCKLALKFKPQYPKALSRAA 173

Query: 121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKE 180
            C FH+K ++ C   CD+ L ++PTD  ++ LR+  +   + + R++RKQ +  KK +KE
Sbjct: 174 TCSFHIKDYDQCIDSCDQFLDQSPTDKIILKLRSDSVIAKERLQRDKRKQERAEKKSDKE 233

Query: 181 KERVLQIIRERKIKLATSGKGDLKSFSDLEPNFPEITLRPVHTDDNDRLVWPVLFLYPEY 240
            E++L+ I  + I L  +         DLEP  P+I    VH D+ D+LVWPV+ LYPE 
Sbjct: 234 DEKLLETISRKGINLELTNDKQKLELRDLEPQVPQIAQSRVHFDEKDKLVWPVMILYPET 293

Query: 241 RITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNG-KPQRVPTTST 299
           + TDF+Q FHED+     L E+F + P WD   +Y    +++Y++  N     +V    T
Sbjct: 294 QQTDFIQNFHEDMLLIEQLIELFEKPPEWDVKHRYTIENINVYFEGKNKCSIHKVDIQLT 353

Query: 300 LGEVLTNPKYVIQAGTPGFSILVADSKEEAQFI 332
           L E+L + +++++ GTP F ILV  S+ E  F+
Sbjct: 354 LDEILRDKQFIVRGGTPAFLILVKSSEAEKHFL 386

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790964|ref|XP_624121.2| PREDICTED: tetratricopeptide repeat protein 4 [Apis mellifera]

 Score =  326 bits (835), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 154/333 (46%), Positives = 222/333 (66%), Gaps = 1/333 (0%)

Query: 1   MEKHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNA 60
           MEKHPFFM K P  GEE+SPL+EGLQQLKY   ENTPEELA  YK++GNFNFK  KYR A
Sbjct: 52  MEKHPFFMKKVPEPGEELSPLMEGLQQLKYGEDENTPEELANNYKEDGNFNFKYKKYRLA 111

Query: 61  IINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120
           I++YTEG++ KC D D+ AQLYNNRAA++F LKNYRS L DC++ALKLK +Y K   RAA
Sbjct: 112 ILSYTEGIRTKCKDVDLMAQLYNNRAAAHFMLKNYRSSLNDCKLALKLKSNYIKALNRAA 171

Query: 121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKE 180
            C  ++K +++C   CD+LL E+PTD  ++ L++  I     + R++RKQ +  K+  K+
Sbjct: 172 TCCLYIKDYDNCIDFCDQLLDESPTDKIILHLKSQAIAARDRLKRDKRKQDRLEKQLNKK 231

Query: 181 KERVLQIIRERKIKLATSGKGDLKSFSDLEPNFPEITLRPVHTDDNDRLVWPVLFLYPEY 240
           +E +L II+   I L  + +       DLEP  P+I    VH D  ++L+WPV+ LYPE 
Sbjct: 232 EEELLNIIKRNGINLELTEENKNPDLKDLEPQVPQIAQNRVHLDAQNKLIWPVMILYPET 291

Query: 241 RITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNG-KPQRVPTTST 299
           + TDF+Q FHED      LE++F+E P WD  ++Y+   +++Y++  +     +V    +
Sbjct: 292 QQTDFIQNFHEDTLLIEQLEQLFNEPPEWDSQKRYILQNINVYFEGKDKCSLHKVDIGQS 351

Query: 300 LGEVLTNPKYVIQAGTPGFSILVADSKEEAQFI 332
           LG++L + +++++ GTP F I V  S+ E +F+
Sbjct: 352 LGKILQDEQFIVRGGTPAFLIFVKSSEAEKRFL 384

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862259|ref|XP_003706601.1| PREDICTED: tetratricopeptide repeat protein 4-like [Megachile rotundata]

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 159/335 (47%), Positives = 224/335 (66%), Gaps = 1/335 (0%)

Query: 1   MEKHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNA 60
           MEKHPFF  K P  GE++SPL+EGLQQLKY   ENTPEELA  YK++GNFN+K  KYR A
Sbjct: 50  MEKHPFFSKKAPEPGEKLSPLMEGLQQLKYGEDENTPEELANNYKEDGNFNYKYKKYRLA 109

Query: 61  IINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120
           I++YTEG++ KC D ++ AQLYNNRAAS+F LKNYRS L DC+ ALKLKPDY K   RAA
Sbjct: 110 ILSYTEGIRTKCKDANLMAQLYNNRAASHFMLKNYRSSLNDCKHALKLKPDYEKAMNRAA 169

Query: 121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKE 180
            C FH+K ++ C  LCD++L + PT+  ++ L++      + + R++RKQ +  KK +KE
Sbjct: 170 TCCFHIKDYDQCIDLCDQMLDQLPTNKEILSLKSQAQAARERLKRDKRKQERMEKKLDKE 229

Query: 181 KERVLQIIRERKIKLATSGKGDLKSFSDLEPNFPEITLRPVHTDDNDRLVWPVLFLYPEY 240
           +E ++ II+ + I L   G        DLEP  P+I    VH D+ ++L+WPV+ LYPE 
Sbjct: 230 EEELINIIKSKGINLELIGGRKNPDLKDLEPQVPQIAQSRVHLDEQNKLIWPVMILYPET 289

Query: 241 RITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNG-KPQRVPTTST 299
             TDF+Q FHED      LEE+FSE P WD +R+Y P  ++IY++  +     +V    +
Sbjct: 290 HQTDFIQNFHEDTLLIEQLEELFSEPPEWDTERRYTPQNINIYFEGKDKCSIHKVNVRHS 349

Query: 300 LGEVLTNPKYVIQAGTPGFSILVADSKEEAQFIKD 334
           LG++L + +++++ GTP F I V  S+ E +F+ +
Sbjct: 350 LGKILQDERFIVRGGTPAFLIFVKSSEAEKRFLSN 384

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204929|gb|EFN83468.1| Tetratricopeptide repeat protein 4 [Harpegnathos saltator]

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 157/337 (46%), Positives = 218/337 (64%), Gaps = 8/337 (2%)

Query: 1   MEKHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNA 60
           M+KHPFFMS  P  GEE+SPL+EGLQQLKY   ENTPEELA  YK++GNFN++  KYR A
Sbjct: 51  MDKHPFFMSTAPKPGEELSPLMEGLQQLKYGEDENTPEELANNYKEDGNFNYRHKKYRIA 110

Query: 61  IINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120
           I++YTEG+K KC D ++ AQLYNNRA ++F LKNYRS L DC++AL LK +YPK  LRAA
Sbjct: 111 ILSYTEGIKTKCKDKELMAQLYNNRAVAHFMLKNYRSSLNDCKLALSLKQEYPKALLRAA 170

Query: 121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKE 180
            C FHLK ++ C  LCD+LL +  TD  ++ L+   +     + R++RKQ +  K+  K 
Sbjct: 171 TCSFHLKDYDQCIELCDKLLAKAATDKDILKLQNDAVLGKACLERDKRKQTRLEKQLNKA 230

Query: 181 KERVLQIIRERKIKLATSGKGDLKSFSDLEPNFPEITLRPVHTDDNDRLVWPVLFLYPEY 240
            E++L+ + ER I + TS    ++  SDL+ N   I  + V  D N+RL+WPVL LYPE 
Sbjct: 231 DEKLLKAVLERGINIQTSNNLKIE-LSDLDHNESHIPQKRVELDTNNRLLWPVLILYPES 289

Query: 241 RITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNGKPQR----VPT 296
             +DFVQ FHED  F   L ++ S  P WD   +Y    +++Y++   GK +     +  
Sbjct: 290 MQSDFVQGFHEDTLFLEQLTDILSVPPEWDTKHEYNVENINVYFE---GKKELSIHVINV 346

Query: 297 TSTLGEVLTNPKYVIQAGTPGFSILVADSKEEAQFIK 333
             TLG++L + ++ ++ G P F ILV  SK E +F+K
Sbjct: 347 QQTLGKILQDERFTVRHGMPTFLILVKSSKAEERFLK 383

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418023|ref|XP_003491696.1| PREDICTED: tetratricopeptide repeat protein 4-like [Bombus impatiens]

 Score =  302 bits (773), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 151/333 (45%), Positives = 217/333 (65%), Gaps = 1/333 (0%)

Query: 1   MEKHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNA 60
           MEKHPFFM K P  GEE+SPL+EGLQQLKY   ENTPEELA  YK++GNFNFK   YR +
Sbjct: 53  MEKHPFFMKKTPEPGEELSPLMEGLQQLKYGEDENTPEELANNYKEDGNFNFKYKNYRLS 112

Query: 61  IINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120
           I++YTEG++ KC D D+ AQLYNNRAA++F L+NYRS L DC++AL+L P+Y KV  RAA
Sbjct: 113 ILSYTEGIRTKCKDIDLMAQLYNNRAAAHFMLRNYRSSLNDCKLALRLIPNYVKVLNRAA 172

Query: 121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKE 180
            C FH+K ++ C   C+ +L  +P D  +  L++  + + + + R++RKQ +  KK  KE
Sbjct: 173 TCCFHMKDYKQCIDFCNRILNRSPNDEIIFHLKSQAVIEGERLKRDKRKQDRLEKKLNKE 232

Query: 181 KERVLQIIRERKIKLATSGKGDLKSFSDLEPNFPEITLRPVHTDDNDRLVWPVLFLYPEY 240
           +E +L +I+E+ + L +       +  DLEP  P+      H D  ++L+WPVL LYPE 
Sbjct: 233 EEELLNVIKEKGVNLESIKGKRNPTLKDLEPQIPQEAQCSFHLDAQNKLIWPVLILYPET 292

Query: 241 RITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNG-KPQRVPTTST 299
           + TDF+Q FHED  F   LEE+ ++ P WD  R+Y P  +++Y++D +     +V     
Sbjct: 293 KQTDFIQNFHEDTLFIEQLEELLNDPPEWDSYRRYTPENINVYFEDKDKCSLHKVNVDLP 352

Query: 300 LGEVLTNPKYVIQAGTPGFSILVADSKEEAQFI 332
           L ++L + + +I+ GTP F  LV  S+ E  F+
Sbjct: 353 LRQILQHERLIIRGGTPMFLALVKSSQAEVGFL 385

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177367|gb|EFN66540.1| Tetratricopeptide repeat protein 4 [Camponotus floridanus]

 Score =  301 bits (770), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 149/310 (48%), Positives = 200/310 (64%), Gaps = 4/310 (1%)

Query: 1   MEKHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNA 60
           MEKHPFFM K P  G+E+SPL+EGLQQLKY   ENTPEELA  YK++GNFN+K  KYR A
Sbjct: 49  MEKHPFFMKKSPEPGDELSPLMEGLQQLKYGIDENTPEELANNYKEDGNFNYKYKKYRLA 108

Query: 61  IINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD---YPKVKL 117
           I++YTEG++ +C DND+ AQLYNNRAA+ F L+NYRS L DC++ LK       Y K   
Sbjct: 109 ILSYTEGIRTRCKDNDLMAQLYNNRAAAQFMLQNYRSSLNDCKVVLKSTKKETLYLKALK 168

Query: 118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKE 177
           RAA C FH+K +  C +LCD+ L  +P D T++ L++        + RNERKQA+  K+ 
Sbjct: 169 RAATCNFHIKDYGQCINLCDQFLDHSPLDKTILKLKSDATITRNYLQRNERKQAKLEKQL 228

Query: 178 EKEKERVLQIIRERKIKLATSGKGDLKSFSDLEPNFPEITLRPVHTDDNDRLVWPVLFLY 237
            KE+ER+L+II ++ I L            DLEP  P+I    VH D ND+L+WPV+ LY
Sbjct: 229 NKEEERLLEIILKKDINLELVNDKQKLDLRDLEPQVPQIAQSRVHFDGNDKLIWPVMILY 288

Query: 238 PEYRITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNG-KPQRVPT 296
           PE + TDF+Q FHED      L E+F ESP WD + +Y+   +++Y++  N     +V  
Sbjct: 289 PETQQTDFIQNFHEDTMLIEQLTEIFEESPEWDAEHRYIVDNINVYFEGKNKCSVHKVDV 348

Query: 297 TSTLGEVLTN 306
             TL ++L N
Sbjct: 349 QLTLDKILRN 358

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321465321|gb|EFX76323.1| hypothetical protein DAPPUDRAFT_306258 [Daphnia pulex]

 Score =  297 bits (760), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 163/338 (48%), Positives = 204/338 (60%), Gaps = 6/338 (1%)

Query: 1   MEKHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNA 60
           ME+HPFFM K P EGE + PL+E  QQLKYDP ENT E+LA +YKD+GNFNFK  KYR A
Sbjct: 49  MEQHPFFMKKLPEEGEPLPPLLEAFQQLKYDPEENTTEDLALSYKDDGNFNFKLKKYRFA 108

Query: 61  IINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120
           I NYTEGLK KC + +++A LY NRAA  F L NYRS L D   A KLKPDY K  +RAA
Sbjct: 109 IANYTEGLKQKCGNVEIDATLYLNRAACQFHLGNYRSSLNDSLQAAKLKPDYTKAVVRAA 168

Query: 121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKE 180
           QC   LK++ D    CD  ++   TD +++ LRT  +   K   RN+RK+    +KEE  
Sbjct: 169 QCCLKLKRYADGQKWCDYGIRLKNTDPSLVKLRTELVQGQKLEERNKRKEEIAERKEEAL 228

Query: 181 KERVLQIIRERKIKLATSGKGD----LKSFSDLEPNFPEITLRPVHTDDNDRLVWPVLFL 236
              ++  +R R I      K D    +   S +EP  P    + VH  D   LVWPVLFL
Sbjct: 229 INELVTALRVRGINTGIKRKKDSERAILDLSSIEPCHPAAIGKRVHLVDG-CLVWPVLFL 287

Query: 237 YPEYRITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQD-PNGKPQRVP 295
           YPEY  TDFVQEFHED  F   L+ MF E P WD ++KY P  + +YY+   +GK   V 
Sbjct: 288 YPEYGETDFVQEFHEDTCFMDHLQLMFEELPLWDLEKKYNPASIRMYYEHRDSGKLHVVD 347

Query: 296 TTSTLGEVLTNPKYVIQAGTPGFSILVADSKEEAQFIK 333
              +L  VL+   YV+Q GTPGF  LV  S  + +F+K
Sbjct: 348 PNCSLKTVLSQKTYVVQGGTPGFICLVEGSPFQKEFLK 385

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357617887|gb|EHJ71051.1| putative Cyclophilin seven suppressor [Danaus plexippus]

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 145/332 (43%), Positives = 206/332 (62%), Gaps = 4/332 (1%)

Query: 1   MEKHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNA 60
           M+KHPFFM   P +GE +SPL EGL +LKYDP ENTP ELAT YK++GNFNFK   YR A
Sbjct: 42  MDKHPFFMKSTPEDGE-LSPLAEGLAKLKYDPEENTPLELATNYKEDGNFNFKHKNYRLA 100

Query: 61  IINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120
           II YTEG+K++C + ++NA LYNNRAA++F LKNYRS L D + AL   P + K +LRAA
Sbjct: 101 IIGYTEGIKVRCDNAEINASLYNNRAAAHFHLKNYRSALYDSEKALSFNPGHEKSRLRAA 160

Query: 121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKE 180
           +    + +F+ C   C +LL++  +D  + +L      K   + R+ERK+ +   K  ++
Sbjct: 161 KSALQISRFDTCIEHCQQLLEQKSSDKELSELMADAKKKKMVVARDERKKKKVEAKRSEQ 220

Query: 181 KERVLQIIRERKIKLATSGKGDLKSFSDLEPNFPEITLRPVHTDDNDRLVWPVLFLYPEY 240
           K+ V++ + +R IK++     D    S LEP  P      VH  +N  L WPVLFLYPEY
Sbjct: 221 KDLVVKAVIQRGIKISKCEDEDDIDLSKLEPTLPGAQESIVHL-ENGILKWPVLFLYPEY 279

Query: 241 RITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNGKPQRVPTTSTL 300
           + +DFV+   EDV     LE++F  +P WDE + Y    +++YY+  +  P  V     L
Sbjct: 280 QTSDFVKACPEDVPLIRQLEQLFP-AP-WDEAKTYNVRSINVYYEGSDKMPHVVDPKKNL 337

Query: 301 GEVLTNPKYVIQAGTPGFSILVADSKEEAQFI 332
           GE+L    Y ++AGTP F ++V  S+ E++FI
Sbjct: 338 GELLVAKYYELKAGTPAFFVMVRGSRAESRFI 369

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
FB|FBgn0033083	396	Dpit47 "DNA polymerase interac	0.991	0.843	0.387	8.1e-60
ZFIN|ZDB-GENE-040426-1021	402	ttc4 "tetratricopeptide repeat	0.614	0.514	0.395	6.1e-54
MGI|MGI:1919604	386	Ttc4 "tetratricopeptide repeat	0.949	0.829	0.388	8e-53
WB|WBGene00015916	419	C17G10.2 [Caenorhabditis elega	0.385	0.310	0.378	7.9e-31
DICTYBASE|DDB_G0286253	397	ttc4 "tetratricopeptide repeat	0.946	0.803	0.283	1e-27
POMBASE|SPAC17A2.04c	358	cns1 "HSP chaperone complex su	0.893	0.840	0.267	3.2e-26
CGD|CAL0005143	390	CNS1 [Candida albicans (taxid:	0.878	0.758	0.292	6.6e-26
UNIPROTKB|Q5ABB8	390	CNS1 "Putative uncharacterized	0.878	0.758	0.292	6.6e-26
TAIR|locus:2020225	360	TPR2 "tetratricopeptide repeat	0.774	0.725	0.284	9.1e-25
SGD|S000000359	385	CNS1 "TPR-containing co-chaper	0.750	0.657	0.293	6.1e-23

FB|FBgn0033083 Dpit47 "DNA polymerase interacting tpr containing protein of 47kD" [Drosophila melanogaster (taxid:7227)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 131/338 (38%), Positives = 187/338 (55%)

Query:     1 MEKHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNA 60
             M+KHPFFM + P  G+++ P+ EGLQ+LKYDP ENT +ELA  YK++GNF  K  K+R A
Sbjct:    51 MDKHPFFMKRAPQPGDDVHPMFEGLQKLKYDPEENTRDELALNYKEDGNFYMKHKKFRMA 110

Query:    61 IINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120
             I ++TEG+K K  + DV A LYNNR+A++FF+KNYRS L+D Q AL  KPDY K + R+A
Sbjct:   111 IYSFTEGIKTKTDNPDVLAVLYNNRSAAHFFIKNYRSSLSDAQRALFYKPDYTKARWRSA 170

Query:   121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNXXXXXXXXXXXXXX 180
             QC + L++F+ CT +C+ELL+ +  +   I L      K  EI RN              
Sbjct:   171 QCAYELERFDLCTQMCEELLEVDVDNEVAIALLHKNKMKKLEIERNQRKEAAEAKRRLTR 230

Query:   181 XXXXLQIIRERKIKLATS--GKGDLKSFSDLEPNFPEITLRPVHTD-DNDRLVWPVLFLY 237
                    I +R IK      GK D+ S   L P F  +   PVH D D   L+WP  F Y
Sbjct:   231 FHRLRDAIEQRAIKFDDQKVGKKDVLSEELLYPKFLPLEDHPVHLDEDGSTLIWPAAFSY 290

Query:   238 PEYRITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPN-GKPQRVPT 296
             PE+  +DF Q+  E  T    L  + +E   +D+   Y  G + +YY++   G   +V  
Sbjct:   291 PEFLYSDFYQQLPETTTMRDCLATLLTEKLPYDKAHNYRLGNVHVYYENRKVGCVHKVDE 350

Query:   297 TSTLGEVLTNPKYVIQAGTPGFSILVADSKEEAQFIKD 334
                L E++    + +  G   F ++  DS+ E +FI +
Sbjct:   351 EKQLAEIIAEKGFFVSGGALLFYVVHKDSRVEQEFINE 388

GO:0005634 "nucleus" evidence=IDA

ZFIN|ZDB-GENE-040426-1021 ttc4 "tetratricopeptide repeat domain 4" [Danio rerio (taxid:7955)]

 Score = 347 (127.2 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
 Identities = 83/210 (39%), Positives = 113/210 (53%)

Query:     2 EKHPFFMSKFPGEGE-EMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNA 60
             EK P FM   P   + E  P +  +Q + +D  + TPEE A + KDEGN  FK  KY+ A
Sbjct:    40 EKVPMFMKTAPENIDPEKHPDLACIQHIIHDD-DRTPEEKARSLKDEGNEYFKEKKYKKA 98

Query:    61 IINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120
             +++YTEGLK  C + ++NA LY NRAA++F L N RS L D   A KLKPD+ K  +R A
Sbjct:    99 VVSYTEGLKTSCVNPELNAVLYTNRAAAHFHLGNMRSALNDATAAKKLKPDHNKAIIRGA 158

Query:   121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNXXXXXXXXXXXXXX 180
             QCL  L+ +      CDE LK  PTD  + +LR +   + +E  R+              
Sbjct:   159 QCLLELRNYAGALQWCDEGLKLFPTDKKLQELRATADKQKREADRDARKAKVKAKKQQNE 218

Query:   181 XXXXLQIIRERKIKLATSGKGDLKSFSDLE 210
                 L  I+ER IKL  + K   ++ SD E
Sbjct:   219 KEALLAAIKERGIKLLKTEKPPHRA-SDSE 247

GO:0003779 "actin binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1919604 Ttc4 "tetratricopeptide repeat domain 4" [Mus musculus (taxid:10090)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 131/337 (38%), Positives = 181/337 (53%)

Query:     2 EKHPFFMSKFPGEGE-EMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNA 60
             +K P FM K P E + E  P +  LQ + +D  +  PEE A TYKDEGN  FK   Y+ A
Sbjct:    40 DKIPLFMKKAPSEIDPEEFPDLACLQSMIFDD-DRYPEEQAKTYKDEGNDYFKEKDYKKA 98

Query:    61 IINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120
             +++Y+EGLK KCAD D+NA LY NRAA+ ++L N RS L D   A KLKP + K  +R A
Sbjct:    99 VLSYSEGLKKKCADPDLNAVLYTNRAAAQYYLGNVRSSLNDVLAAKKLKPGHLKAIIRGA 158

Query:   121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNXXXXXXXXXXXXXX 180
              C   LK F +  + CDE L+ +  +  ++++R       +   R+              
Sbjct:   159 LCHLELKHFAEAVNWCDEGLQIDAKEKKLLEIRAKADKLKRMEERDLRKAKLKEKKEQHQ 218

Query:   181 XXXXLQIIRERKIKLATSGKGDLKSFSDLEPNFP-EITL------RP----VHTDDNDRL 229
                 LQ I+ R I+L +   G+ +   D   N P EI L       P    +  DD  RL
Sbjct:   219 NEALLQAIKARNIRLVSESAGEDE---DSASNGPAEILLDGLSSENPYGARLSIDDQGRL 275

Query:   230 VWPVLFLYPEYRITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPN- 288
              WPVLFLYPEY  +DF+  FHED  F   L  MFSE+P WD + KY P  L +Y++D + 
Sbjct:   276 SWPVLFLYPEYAQSDFISAFHEDTRFIDHLMAMFSEAPSWDSEHKYHPENLEVYFEDEDR 335

Query:   289 GKPQRVPTTSTLGEVLTNPKYVIQAGTPGFSILVADS 325
              +  +V   STL +VL +P+  ++A TP F + V  S
Sbjct:   336 AELYQVSPDSTLLQVLQHPRCCVKALTPAFLVCVGSS 372

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

WB|WBGene00015916 C17G10.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 234 (87.4 bits), Expect = 7.9e-31, Sum P(2) = 7.9e-31
 Identities = 50/132 (37%), Positives = 78/132 (59%)

Query:     1 MEKHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEEL-ATTYKDEGNFNFKCNKYRN 59
             +++HP FM++ P +G+     +E LQ +KYD  ++  +++ A  +K+EGN +FK  KYR 
Sbjct:    55 IDQHPAFMTEMPTDGKYQDT-IEALQSMKYDKEDDEDKQMNAEHHKEEGNKHFKFKKYRW 113

Query:    60 AIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119
             A   Y+ G+K    D  +NA LY NRAA+   L N RS + DC +  K  P + K  +R 
Sbjct:   114 ATDCYSNGIKENSPDRKLNAVLYFNRAAAQKHLGNLRSAIKDCSMGRKFDPTHLKGVIRG 173

Query:   120 AQCLFHLKKFED 131
             A+CL  L+  +D
Sbjct:   174 AECLLELEYAKD 185

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

DICTYBASE|DDB_G0286253 ttc4 "tetratricopeptide repeat domain 4" [Dictyostelium discoideum (taxid:44689)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 100/353 (28%), Positives = 159/353 (45%)

Query:     5 PFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYR--NAII 62
             P FM + P E      L    Q L  D    TPEE A T+K+ GN  F+  K R  +A+ 
Sbjct:    58 PIFMQELPEEPSSNQYLA-AFQSLSNDC---TPEERAETFKNLGNDYFREGKSRFNDALY 113

Query:    63 NYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQC 122
              Y + L +KC D   N+   +NRAA N  L NY   + DC ++++  P   K   R A+ 
Sbjct:   114 YYNKALSVKCNDMTKNSIYLSNRAAINMELGNYGLVIKDCTVSVEFNPLNMKAYSRMARA 173

Query:   123 LFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEIL-RNXXXXXXXXXXXXXXX 181
                L K++D    CD  L   PT+  +  +R +   K ++I  R                
Sbjct:   174 QLQLSKYQDSIKTCDLGLSHEPTNKDLSTIRENANKKLQDIKKREQDKIDKENQLKQQQQ 233

Query:   182 XXXLQIIRERKIKLATSGKGDLKSFSDLEPNFPEITLRPVHTDDNDRLVWPVLFLYPEYR 241
                 ++  + K KL            D+   +   + R V  D N+ + +PV+FLYPE+ 
Sbjct:   234 LLATKLYEKNKYKLG-------HQIFDMS-QYTYQSDRKVTIDQNNDVHFPVVFLYPEFG 285

Query:   242 ITDFVQEFHEDVTFDSMLEEMFS-ESPG---WDEDRKYVPGRLSIYYQDPNGKPQ----- 292
              +DF+ +F ED TF   L+ MF  E+P    WD  ++Y   R+ +Y++    KP      
Sbjct:   286 KSDFIMDFQEDHTFGDHLQMMFPPENPEFAPWDTKKEYTMDRIEVYFETNWTKPILSDIK 345

Query:   293 ---------RVPTTSTLGEVLTNPKYVIQAGTPGFSILVADSKEEAQFIKDCL 336
                      RV  T+ + +V+++P Y+I    P F I+   +    +F+++ L
Sbjct:   346 IKEIEKKWIRVKHTTDIAKVISHPTYIIPE-IPIFYIVSRGNLFYKKFLENKL 397

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPAC17A2.04c cns1 "HSP chaperone complex subunit Cns1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 85/318 (26%), Positives = 135/318 (42%)

Query:     1 MEKHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNA 60
             + K PFFM      G+E    V+ L  LK    E  P E+A  +++ GN  F   +Y++A
Sbjct:    25 LNKVPFFMQSLEDVGDESENNVQ-LDALKALAYEGEPHEVAQNFREHGNECFASKRYKDA 83

Query:    61 IINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120
                YT+ L  KC D D+    Y+NRAA N   +NYR  L DC   L+    + K   R+A
Sbjct:    84 EEFYTKALAQKCGDKDIEIACYSNRAACNLLFENYRQVLNDCAQVLQRDSTHAKAYYRSA 143

Query:   121 QCLFHLKKFED---CTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNXXXXXXXXXXX 177
             + L  LK++++   C  LC  +   +P D  ++ L      K  +  +            
Sbjct:   144 KALVALKRYDEAKECIRLCSLV---HPNDPAILALSKELQKKSDDFEKRESEKKRVAQEK 200

Query:   178 XXXXXXXLQIIRERKIKLATSGKGDLKSFSDLEPNFPEITLRPVHTDD-NDRLVWPVLFL 236
                    L  ++ER IK  T+         +  P+  +  +     DD    L +P + L
Sbjct:   201 VIAAKTVLLALQERHIKTKTT---------EHPPDLGDAMISLSTFDDPKSELFFPTILL 251

Query:   237 YPEYRITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNGKPQRVPT 296
             YP    +DFV    E+ T   +L+ +F     WD  + Y P  L ++         +V  
Sbjct:   252 YPLVYQSDFVPSVSENCTPLELLKTVFQSPAPWDVHQLYNPDSLDVFATTDTLGLIKVGK 311

Query:   297 TSTLGEVLTNPKYVIQAG 314
                + + LT+PK  +  G
Sbjct:   312 NVPILKALTHPKVTLIDG 329

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=ISO

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0043234 "protein complex" evidence=NAS

CGD|CAL0005143 CNS1 [Candida albicans (taxid:5476)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 92/315 (29%), Positives = 146/315 (46%)

Query:     1 MEKHPFFMSKFP---GEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKY 57
             + + PFFM+K     G+G E   L E L+ L Y   E  P+E+A+ +K++GN  +K  KY
Sbjct:    51 LNRLPFFMTKLDETDGDGGENVNL-EALKSLAY---EGDPDEIASNFKNQGNNCYKFKKY 106

Query:    58 RNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL 117
             ++AII YT+GL++ C  + +N+ LY NRAA N  LKNYR C+ DC+  L L     K   
Sbjct:   107 KDAIIFYTKGLEVNCDVDAINSALYLNRAACNLELKNYRRCIEDCKKVLMLDEKNIKACF 166

Query:   118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNXXXXXXXXXXX 177
             R+ +  F ++K+++   + +  L   P +  +  L    + K +E L             
Sbjct:   167 RSGKAFFAIEKYDEAIKVLEYGLNIEPENKDLQKLLQQ-VQKRQETLAQIKAKKAQEEEQ 225

Query:   178 XXXXXXXLQIIRERKIKLATSGKGDLKSFSDLEP-NFPEITLRPVHTDDNDRLVWPVLFL 236
                      I+ E  IKL       +KS S  E     +I L     D   +L++P + L
Sbjct:   226 ERLK----NIVLENSIKLRHIEI--VKSSSPPEVLKTAKIRLEDPK-DYQSQLIFPAMIL 278

Query:   237 YPEYRITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVP---GRLSIYYQDPNGKPQR 293
             YP     DF+ E  E  T   +LE + +    W +D K+      +L  + +  +G   +
Sbjct:   279 YPTTDEFDFIAEISELTTPLELLEMVLNRPREWFDDPKHKDFNVKKLECFMETESGGLIK 338

Query:   294 VPTTSTLGEVLTNPK 308
             V     +   L N K
Sbjct:   339 VGKKIEVNNALMNEK 353

GO:0035690 "cellular response to drug" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

UNIPROTKB|Q5ABB8 CNS1 "Putative uncharacterized protein CNS1" [Candida albicans SC5314 (taxid:237561)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 92/315 (29%), Positives = 146/315 (46%)

Query:     1 MEKHPFFMSKFP---GEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKY 57
             + + PFFM+K     G+G E   L E L+ L Y   E  P+E+A+ +K++GN  +K  KY
Sbjct:    51 LNRLPFFMTKLDETDGDGGENVNL-EALKSLAY---EGDPDEIASNFKNQGNNCYKFKKY 106

Query:    58 RNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL 117
             ++AII YT+GL++ C  + +N+ LY NRAA N  LKNYR C+ DC+  L L     K   
Sbjct:   107 KDAIIFYTKGLEVNCDVDAINSALYLNRAACNLELKNYRRCIEDCKKVLMLDEKNIKACF 166

Query:   118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNXXXXXXXXXXX 177
             R+ +  F ++K+++   + +  L   P +  +  L    + K +E L             
Sbjct:   167 RSGKAFFAIEKYDEAIKVLEYGLNIEPENKDLQKLLQQ-VQKRQETLAQIKAKKAQEEEQ 225

Query:   178 XXXXXXXLQIIRERKIKLATSGKGDLKSFSDLEP-NFPEITLRPVHTDDNDRLVWPVLFL 236
                      I+ E  IKL       +KS S  E     +I L     D   +L++P + L
Sbjct:   226 ERLK----NIVLENSIKLRHIEI--VKSSSPPEVLKTAKIRLEDPK-DYQSQLIFPAMIL 278

Query:   237 YPEYRITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVP---GRLSIYYQDPNGKPQR 293
             YP     DF+ E  E  T   +LE + +    W +D K+      +L  + +  +G   +
Sbjct:   279 YPTTDEFDFIAEISELTTPLELLEMVLNRPREWFDDPKHKDFNVKKLECFMETESGGLIK 338

Query:   294 VPTTSTLGEVLTNPK 308
             V     +   L N K
Sbjct:   339 VGKKIEVNNALMNEK 353

GO:0035690 "cellular response to drug" evidence=IMP

TAIR|locus:2020225 TPR2 "tetratricopeptide repeat 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
 Identities = 81/285 (28%), Positives = 130/285 (45%)

Query:    38 EELATTYKDEGNFNFKCNK--YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNY 95
             E  A  +K+EGN   +  K  Y  AI  YT+ +      +   + L++NR+  N  L NY
Sbjct:    28 ESTAIEFKEEGNECVRKGKKHYSEAIDCYTKAISQGVLSDSETSILFSNRSHVNLLLGNY 87

Query:    96 RSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTS 155
             R  LTD + +++L P   K   RAA+    L    +    C++ ++ +P++  +  L   
Sbjct:    88 RRALTDAEESMRLSPHNVKAVYRAAKASMSLDLLNEAKSYCEKGIENDPSNEDMKKL-LK 146

Query:   156 CINKHKEILRNXXXXXXXXXXXXXXXXXXLQIIRERKIKLATSGKGDLKSFSDLEPNFPE 215
              +N  K+                      L  I  R +K+   GK   +  + L+     
Sbjct:   147 LVNSKKQ---EKEQHEAQASQAVVEAKACLSAIENRGVKI---GKAMYRELTGLK----- 195

Query:   216 ITLRPVHTDDNDRLVWPVLFLYPEYRITDFVQEFHEDVTFDSMLEEMFSE-SPG--WDED 272
                +P+  D N+ L WPVL LY E   +DFV++F E   F + L+ MFSE SP   WD++
Sbjct:   196 ---KPM-LDKNNILHWPVLLLYAEAMTSDFVEDFCETDMFATHLDMMFSEDSPPLPWDKN 251

Query:   273 RKYVPGRLSIYYQDPNGKPQRVPTTSTLGEVLTNPKYVIQAGTPG 317
              +Y    + +YY+  +G P  +P +  L  +L   K   QA T G
Sbjct:   252 NEYSRDVIELYYEASSGTP--LPRSRVLQYLLEGTKGS-QAETTG 293

GO:0005737 "cytoplasm" evidence=ISM

GO:0051879 "Hsp90 protein binding" evidence=IPI

SGD|S000000359 CNS1 "TPR-containing co-chaperone" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 80/273 (29%), Positives = 131/273 (47%)

Query:     1 MEKHPFFMSKFP---GEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKY 57
             M + PFFM+K     G G E   L E L+ L Y   E  P E+A  +K +GN  +K  ++
Sbjct:    44 MNRMPFFMTKLDETDGAGGENVEL-EALKALAY---EGEPHEIAENFKKQGNELYKAKRF 99

Query:    58 RNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL 117
             ++A   Y++GL ++C D  +N  LY NRAA    LKNYR C+ DC  AL + P   K   
Sbjct:   100 KDARELYSKGLAVECEDKSINESLYANRAACELELKNYRRCIEDCSKALTINPKNVKCYY 159

Query:   118 RAAQCLFHLKKFEDCTHLCDELLKE-NPTDSTVIDLRTSCINKHKEILRNXXXXXXXXXX 176
             R ++  F L K E+         +  +P + +++++  S I++ ++ L+           
Sbjct:   160 RTSKAFFQLNKLEEAKSAATFANQRIDPENKSILNM-LSVIDRKEQELK----AKEEKQQ 214

Query:   177 XXXXXXXXLQIIRERKIKLATSGKGDLKSFSDLEP-NFPEITLR-PVHTDDNDRLVWPVL 234
                      +I+ E  + L      ++K+ S +E  N  +I L  P+  D   +L++P L
Sbjct:   215 REAQERENKKIMLESAMTLRNIT--NIKTHSPVELLNEGKIRLEDPM--DFESQLIYPAL 270

Query:   235 FLYPEYRITDFVQEFHEDVTFDSMLEEMFSESP 267
              +YP     DFV E  E  T   +++ +  E P
Sbjct:   271 IMYPTQDEFDFVGEVSELTTVQELVD-LVLEGP 302

GO:0006457 "protein folding" evidence=IGI;IPI

GO:0005737 "cytoplasm" evidence=IEA;IPI

GO:0030544 "Hsp70 protein binding" evidence=IDA

GO:0051879 "Hsp90 protein binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54M20	TTC4_DICDI	No assigned EC number	0.3111	0.8664	0.7355	yes	N/A
O13754	CNS1_SCHPO	No assigned EC number	0.2782	0.9080	0.8547	yes	N/A
Q5EA11	TTC4_BOVIN	No assigned EC number	0.4082	0.9525	0.8273	yes	N/A
P33313	CNS1_YEAST	No assigned EC number	0.3045	0.7329	0.6415	yes	N/A
Q8R3H9	TTC4_MOUSE	No assigned EC number	0.4023	0.9525	0.8316	yes	N/A
O95801	TTC4_HUMAN	No assigned EC number	0.4100	0.9465	0.8242	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	337
pfam13414	69	pfam13414, TPR_11, TPR repeat	7e-11
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	5e-07
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-04

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 56.9 bits (138), Expect = 7e-11
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL-KNYRS 97
           + A   K+ GN  FK   Y  AI  Y + L++    +  NA+ Y N A +   L K+Y  
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALEL----DPDNAEAYYNLALAYLKLGKDYEE 56

Query: 98  CLTDCQIALKLKP 110
            L D + AL+L P
Sbjct: 57  ALEDLEKALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 44  YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ 103
             + GN  +K   Y  A+  Y + L++    +  NA  Y N AA+ + L  Y   L D +
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKALEL----DPDNADAYYNLAAAYYKLGKYEEALEDYE 58

Query: 104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT 145
            AL+L PD  K         + L K+E+     ++ L+ +P 
Sbjct: 59  KALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 78  NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHL-KKFEDCTHLC 136
           NA+   N   + F L +Y   +   + AL+L PD  +     A     L K +E+     
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 137 DELLKENP 144
           ++ L+ +P
Sbjct: 62  EKALELDP 69

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 50/184 (27%), Positives = 75/184 (40%), Gaps = 41/184 (22%)

Query: 34  ENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK 93
           E   ++ A   K++GN  ++   +  AI  Y++   I+C  + V    Y+NRAA +  L 
Sbjct: 120 EEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKA--IECKPDPV---YYSNRAACHNALG 174

Query: 94  NYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLR 153
           ++   + D   AL+L PDY K   R A     L K+ D                 ++DL 
Sbjct: 175 DWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYAD----------------ALLDLT 218

Query: 154 TSCINKHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKLATSGKGDLKSFSDLEPNF 213
            SCI       RNE + AQ V       ER+L+   E K K         +       N 
Sbjct: 219 ASCIIDG---FRNE-QSAQAV-------ERLLKKFAESKAK---------EILETKPENL 258

Query: 214 PEIT 217
           P +T
Sbjct: 259 PSVT 262

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 15/71 (21%), Positives = 29/71 (40%)

Query: 80  QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDEL 139
           +   N     + L +Y   L   + AL+L PD        A   + L K+E+     ++ 
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 140 LKENPTDSTVI 150
           L+ +P ++   
Sbjct: 61  LELDPDNAKAY 71

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	337
KOG0551|consensus	390		100.0
KOG0553|consensus	304		99.91
KOG4234|consensus	271		99.86
KOG0550|consensus	486		99.83
KOG0543|consensus	397		99.8
KOG0548|consensus	539		99.79
KOG4648|consensus	536		99.75
KOG0547|consensus	606		99.73
KOG0548|consensus	539		99.72
PRK15359	144	type III secretion system chaperone protein SscB;	99.69
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.66
KOG4642|consensus	284		99.6
KOG4626|consensus	966		99.59
KOG0376|consensus	476		99.56
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.56
KOG0624|consensus	504		99.5
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.5
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.49
PRK11189	296	lipoprotein NlpI; Provisional	99.48
KOG0545|consensus	329		99.47
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.45
KOG4626|consensus	966		99.42
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.36
PRK12370	553	invasion protein regulator; Provisional	99.32
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.32
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.3
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.29
PRK12370	553	invasion protein regulator; Provisional	99.28
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.28
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.23
PRK15359	144	type III secretion system chaperone protein SscB;	99.22
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.21
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.21
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.18
KOG0624|consensus	504		99.18
PLN02789	320	farnesyltranstransferase	99.18
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.18
KOG1155|consensus	559		99.17
KOG1126|consensus	638		99.17
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.15
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.14
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.13
PRK11189	296	lipoprotein NlpI; Provisional	99.12
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.11
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.11
KOG1155|consensus	559		99.11
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.1
KOG1126|consensus	638		99.09
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.08
KOG0547|consensus	606		99.08
PRK15331	165	chaperone protein SicA; Provisional	99.07
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.06
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.06
KOG1125|consensus	579		99.05
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.05
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.05
KOG1308|consensus	377		99.04
KOG0550|consensus	486		99.04
KOG1173|consensus	611		99.02
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.99
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.99
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.97
PLN02789	320	farnesyltranstransferase	98.96
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.95
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.94
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.92
PRK10803	263	tol-pal system protein YbgF; Provisional	98.92
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.91
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.91
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.89
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.89
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.88
KOG1310|consensus	758		98.86
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.85
KOG0553|consensus	304		98.85
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.84
PF13371	73	TPR_9: Tetratricopeptide repeat	98.83
KOG4555|consensus	175		98.82
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.82
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.81
KOG1125|consensus	579		98.79
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.79
KOG2076|consensus	895		98.78
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.78
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.77
PF13512	142	TPR_18: Tetratricopeptide repeat	98.76
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.74
PF13371	73	TPR_9: Tetratricopeptide repeat	98.71
KOG2003|consensus	840		98.7
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.69
KOG0546|consensus	372		98.68
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.67
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.67
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.66
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.65
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.63
PF12688	120	TPR_5: Tetratrico peptide repeat	98.63
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.62
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.61
PRK14574	822	hmsH outer membrane protein; Provisional	98.61
KOG4162|consensus	799		98.61
KOG2002|consensus	1018		98.6
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.59
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.59
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.58
PRK14574	822	hmsH outer membrane protein; Provisional	98.58
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.57
KOG2076|consensus	895		98.55
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.54
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.54
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.5
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.48
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.46
KOG2002|consensus	1018		98.45
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.42
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.41
KOG0543|consensus	397		98.37
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.36
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.33
KOG1129|consensus	478		98.28
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.27
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.27
KOG1840|consensus	508		98.27
KOG1128|consensus	777		98.25
PRK11906	458	transcriptional regulator; Provisional	98.25
KOG1173|consensus	611		98.25
KOG1840|consensus	508		98.24
KOG1127|consensus	1238		98.21
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.19
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.19
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.18
KOG3060|consensus	289		98.18
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.17
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.16
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.14
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.13
PRK11906	458	transcriptional regulator; Provisional	98.13
KOG3060|consensus	289		98.12
KOG1156|consensus	700		98.11
KOG4648|consensus	536		98.1
KOG1128|consensus	777		98.1
KOG2003|consensus	840		98.09
KOG4151|consensus	748		98.09
KOG1174|consensus	564		98.08
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.08
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.06
PF13431	34	TPR_17: Tetratricopeptide repeat	98.03
KOG4162|consensus	799		98.01
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.0
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.99
KOG4234|consensus	271		97.98
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.97
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.94
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.91
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.9
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.88
KOG1129|consensus	478		97.88
PF13428	44	TPR_14: Tetratricopeptide repeat	97.88
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.88
PF12688	120	TPR_5: Tetratrico peptide repeat	97.88
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.87
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.85
PRK10803	263	tol-pal system protein YbgF; Provisional	97.84
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.83
KOG0495|consensus	913		97.81
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.8
KOG1156|consensus	700		97.79
PF13428	44	TPR_14: Tetratricopeptide repeat	97.79
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.79
KOG1174|consensus	564		97.77
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.76
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.76
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.72
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.71
KOG3785|consensus	557		97.68
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.64
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.62
KOG1127|consensus	1238		97.58
KOG0551|consensus	390		97.5
PF13431	34	TPR_17: Tetratricopeptide repeat	97.48
KOG0545|consensus	329		97.48
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.47
KOG2796|consensus	366		97.47
PRK10941	269	hypothetical protein; Provisional	97.46
KOG4642|consensus	284		97.43
PRK15331	165	chaperone protein SicA; Provisional	97.43
KOG1130|consensus	639		97.41
PF13512	142	TPR_18: Tetratricopeptide repeat	97.41
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.36
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.3
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.3
KOG3824|consensus	472		97.3
KOG4555|consensus	175		97.24
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.22
KOG1130|consensus	639		97.2
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.18
KOG3785|consensus	557		97.15
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.14
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.12
KOG0376|consensus	476		97.12
KOG0495|consensus	913		97.11
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.09
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.09
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.07
KOG4340|consensus	459		97.02
KOG4507|consensus	886		96.91
KOG2376|consensus	652		96.89
KOG1941|consensus	518		96.83
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.77
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.75
KOG4340|consensus	459		96.75
KOG1308|consensus	377		96.74
KOG3081|consensus	299		96.72
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.67
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.64
PRK04841	903	transcriptional regulator MalT; Provisional	96.64
KOG2053|consensus	932		96.63
KOG2471|consensus	696		96.62
KOG3081|consensus	299		96.62
KOG3364|consensus	149		96.61
KOG4814|consensus	872		96.6
KOG2376|consensus	652		96.58
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.57
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.47
KOG1586|consensus	288		96.47
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.45
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.3
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.29
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.28
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.26
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.24
PRK04841	903	transcriptional regulator MalT; Provisional	96.24
KOG1586|consensus	288		96.23
PLN03077	857	Protein ECB2; Provisional	96.22
KOG4507|consensus	886		96.11
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.05
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.0
KOG1941|consensus	518		95.89
KOG2396|consensus	568		95.87
KOG3824|consensus	472		95.86
PRK10941	269	hypothetical protein; Provisional	95.81
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.69
PLN03218	1060	maturation of RBCL 1; Provisional	95.64
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.64
PLN03218	1060	maturation of RBCL 1; Provisional	95.56
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.56
COG2912	269	Uncharacterized conserved protein [Function unknow	95.53
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.48
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.46
PLN03077	857	Protein ECB2; Provisional	95.42
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.28
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.15
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.99
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.94
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	94.81
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.76
KOG2610|consensus	491		94.72
KOG3364|consensus	149		94.72
KOG1915|consensus	677		94.58
KOG1585|consensus	308		94.49
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.46
KOG1915|consensus	677		94.34
KOG2796|consensus	366		94.13
KOG2471|consensus	696		94.12
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.04
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.94
COG4700	251	Uncharacterized protein conserved in bacteria cont	93.91
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	93.85
KOG0686|consensus	466		93.77
KOG2610|consensus	491		93.73
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.69
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.34
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.16
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.13
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	93.13
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.04
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.0
COG3898	531	Uncharacterized membrane-bound protein [Function u	92.95
KOG2053|consensus	932		92.9
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.9
KOG4814|consensus	872		92.63
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	92.54
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	92.54
COG4976	287	Predicted methyltransferase (contains TPR repeat)	92.5
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	92.49
KOG1585|consensus	308		92.46
COG3898	531	Uncharacterized membrane-bound protein [Function u	92.33
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.28
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.91
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.67
COG2912	269	Uncharacterized conserved protein [Function unknow	91.54
KOG1070|consensus	1710		91.43
KOG0530|consensus	318		90.97
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	90.69
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.44
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.28
KOG1070|consensus	1710		90.06
KOG1550|consensus	552		90.01
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	89.83
KOG2047|consensus	835		89.5
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	89.15
COG3947	361	Response regulator containing CheY-like receiver a	89.11
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	89.05
KOG0530|consensus	318		89.02
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	88.98
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	88.98
COG5191	435	Uncharacterized conserved protein, contains HAT (H	88.62
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	88.56
KOG0529|consensus	421		88.48
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	87.51
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	86.67
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	86.6
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	86.4
KOG2047|consensus	835		85.99
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	85.66
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	85.32
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	85.24
KOG2581|consensus	493		84.81
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	84.52
PF04212	69	MIT: MIT (microtubule interacting and transport) d	84.37
KOG2300|consensus	629		84.21
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	83.77
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	83.29
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	83.27
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	83.23
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	83.14
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	83.06
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	82.83
KOG3617|consensus	1416		82.65
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	82.57
KOG0985|consensus	1666		82.55
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	82.42
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	82.3
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	82.23
COG4455	273	ImpE Protein of avirulence locus involved in tempe	82.01
KOG0529|consensus	421		81.99
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	81.96
KOG0985|consensus	1666		81.62
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	81.47
COG3118	304	Thioredoxin domain-containing protein [Posttransla	81.21
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	81.17
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	80.31

>KOG0551|consensus

Probab=100.00  E-value=5.5e-79  Score=547.42  Aligned_cols=333  Identities=39%  Similarity=0.619  Sum_probs=303.5

Q ss_pred             CCCCCCCCcCCCCCCCCCChhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHH
Q psy5660           1 MEKHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQ   80 (337)
Q Consensus         1 ~~~~PlFm~~~p~~~~~~~~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~   80 (337)
                      ||+||||||++|++| +.++++++||+|++++.|++|+++|++||+.||.||+.++|+.|+.+|++||+.+|.|+++++.
T Consensus        42 m~k~PfFMt~~p~~g-d~~~~~~~LqslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnav  120 (390)
T KOG0551|consen   42 MNKVPFFMTRAPSEG-DPNPDNVCLQSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAV  120 (390)
T ss_pred             HhcCcHHHhcCCCCC-CCCccHHHHHHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHH
Confidence            799999999999997 5699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH---HHHH
Q psy5660          81 LYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLR---TSCI  157 (337)
Q Consensus        81 ~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l---~~~~  157 (337)
                      +|+|||+|++.+|||++||.||.+|++++|++.||++|.|+|++++.++++|..||+.++.++-..+.+..+.   ....
T Consensus       121 LY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~~l~~k~~  200 (390)
T KOG0551|consen  121 LYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIELRNLIHKND  200 (390)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcCcch
Confidence            9999999999999999999999999999999999999999999999999999999999999998887776666   3334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc--CC-CCCCCccCCCCCCCCCC-CCCCeeecCCCceeeee
Q psy5660         158 NKHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKLAT--SG-KGDLKSFSDLEPNFPEI-TLRPVHTDDNDRLVWPV  233 (337)
Q Consensus       158 ~~~~~~~~~~~k~~~~~~~~~~~~~~l~~al~~rgi~~~~--~~-~~~~~~~~~~~~~~~~~-~~~~~~ld~~~~l~~Pv  233 (337)
                      ..+...+++.+|....++++..+...+..+++.|+|++.+  +. +...++...+...+|.+ ....+.+|.+|.|+||+
T Consensus       201 ~~~L~~er~~rK~~~e~kk~~e~~krl~~a~k~r~ikl~~~~~~~r~~~se~~~~~~~L~~~~~~~~~~~D~~s~LiwP~  280 (390)
T KOG0551|consen  201 KLKLIEERDVRKKNAEEKKERESNKRLLQAIKARNIKLSEAACEDRDSLSEELFLPGLLPENPHGLRLSLDGQSRLIWPA  280 (390)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcchhhhccchhhhhhhcCCCcCCCCccccccccCCcceeehhH
Confidence            4466677888888888888888899999999999999987  33 33455555555555543 22355567889999999


Q ss_pred             eeeeccCCccccccccCCcCCHHHHHHHhcCCCCCCCCCCCcccCceEEEEEcCCCCeEEcCCCCCHHHhhcCCceEeeC
Q psy5660         234 LFLYPEYRITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNGKPQRVPTTSTLGEVLTNPKYVIQA  313 (337)
Q Consensus       234 l~lYPe~~q~Dfi~~~~e~~~~~~~l~~~f~~~~~wd~~~~y~~~~~~~y~e~~~~~~~~v~~~~~l~~vl~~~~~~~~~  313 (337)
                      +|+|||+.|||||++++|++|+++||.+||++|+|||.+++|+++||.|||+|..++|+|||++.||++||++++|.|.+
T Consensus       281 l~~YPe~~qsDFv~e~~E~tT~~elL~~vl~~p~~wD~~~~y~p~nv~Vf~e~~~~gL~kV~~~~~~~~iL~~~~~~l~~  360 (390)
T KOG0551|consen  281 LFLYPEYAQSDFVSEVSELTTVIELLKTVLGEPAPWDLEQKYNPDNVLVFMETEAGGLIKVGKKSTLLDILKHPGVFLKD  360 (390)
T ss_pred             HHhccchhhcchhhhccccccHHHHHHHHhCCCCCCCHHhccCccceeEEEeccccceeeccccchHHHHHcCCCeeecC
Confidence            99999999999999999999999999999999999999999999999999999998899999999999999999999999


Q ss_pred             CceEEEEEeCCCHH--HHHHhhh
Q psy5660         314 GTPGFSILVADSKE--EAQFIKD  334 (337)
Q Consensus       314 ~~~~~~v~~k~~~~--~~~f~~~  334 (337)
                      |+|.||||||.|++  .+.|+++
T Consensus       361 g~~~i~Vv~k~~a~~~~~~~~k~  383 (390)
T KOG0551|consen  361 GALKIYVVPKVSAEGWISKFDKQ  383 (390)
T ss_pred             CceEEEEecCccchHHHHHHHhh
Confidence            99999999999996  8999875

>KOG0553|consensus

Probab=99.91  E-value=1.1e-23  Score=189.11  Aligned_cols=138  Identities=27%  Similarity=0.407  Sum_probs=121.9

Q ss_pred             ChhHHHhhccccCC-CCC---ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccC
Q psy5660          19 SPLVEGLQQLKYDP-LEN---TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKN   94 (337)
Q Consensus        19 ~~~lealqaL~~dp-~~~---~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~   94 (337)
                      .+.++.+.+..-.| ++.   +....|+.+|.+||.+++.++|..|+..|++||+++|.    ++++|+|||++|.+||.
T Consensus        55 ~~~l~~~~~~~~~~~~~~~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~----nAVyycNRAAAy~~Lg~  130 (304)
T KOG0553|consen   55 TTLLDSFESAERHPVEILTPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT----NAVYYCNRAAAYSKLGE  130 (304)
T ss_pred             ccHHHHHHHhccCcccccChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC----cchHHHHHHHHHHHhcc
Confidence            34555555544322 122   34578999999999999999999999999999999999    66999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660          95 YRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH  160 (337)
Q Consensus        95 ~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~  160 (337)
                      |..|+.||+.||.+||.+.|+|.|+|.+|+.+|++.+|++.|+++|.++|+|...+..+..++.+.
T Consensus       131 ~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l  196 (304)
T KOG0553|consen  131 YEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL  196 (304)
T ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999988888776553

>KOG4234|consensus

Probab=99.86  E-value=1.3e-20  Score=160.10  Aligned_cols=164  Identities=26%  Similarity=0.350  Sum_probs=135.4

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc-hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN-DVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV  115 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~-~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka  115 (337)
                      ..+.|..+|..||.+|+.|+|..|...|+.||++.|.-. +..+++|+|||+|.++++.+..||.+|.+||+++|.+.+|
T Consensus        91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA  170 (271)
T KOG4234|consen   91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA  170 (271)
T ss_pred             HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence            357789999999999999999999999999999998644 5689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Q psy5660         116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKL  195 (337)
Q Consensus       116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~l~~al~~rgi~~  195 (337)
                      +.|+|.+|..+.+|++|+..|++.++++|...++.....++-.+.             ..+.+.-+.++...|+..|.-+
T Consensus       171 l~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i-------------~ernEkmKee~m~kLKdlGN~i  237 (271)
T KOG4234|consen  171 LERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI-------------NERNEKMKEEMMEKLKDLGNFI  237 (271)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH-------------HHHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999999887665544432221             1122333455788899998866


Q ss_pred             ccCCCCCCCccCCCCCCCCCCCCCCeeecCC
Q psy5660         196 ATSGKGDLKSFSDLEPNFPEITLRPVHTDDN  226 (337)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~  226 (337)
                      ..             |......++.+..|++
T Consensus       238 L~-------------pFGlStdnFqmvqd~n  255 (271)
T KOG4234|consen  238 LS-------------PFGLSTDNFQMVQDPN  255 (271)
T ss_pred             cc-------------cccccccceeeeeCCC
Confidence            55             4444455567777755

>KOG0550|consensus

Probab=99.83  E-value=5.1e-20  Score=170.96  Aligned_cols=173  Identities=25%  Similarity=0.337  Sum_probs=149.9

Q ss_pred             HHHhhccccCCCCCCh------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCH
Q psy5660          22 VEGLQQLKYDPLENTP------EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNY   95 (337)
Q Consensus        22 lealqaL~~dp~~~~~------~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~   95 (337)
                      ....|+|..||+..+-      ....+..+++||.+|+.|+|+.|-++|++||.++|++.+.++-+|.|||.++.++|+.
T Consensus       224 ~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl  303 (486)
T KOG0550|consen  224 NHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL  303 (486)
T ss_pred             HHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCc
Confidence            3455678888844332      2456788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy5660          96 RSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK-HKEILRNERKQAQQV  174 (337)
Q Consensus        96 ~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~-~~~~~~~~~k~~~~~  174 (337)
                      ++||.||+.|+++||.+.||+.++|+|++.+++|++|.++|+++.+.+.+ .+....+.+++.. ++....+.++.  ..
T Consensus       304 ~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd~yki--lG  380 (486)
T KOG0550|consen  304 REAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKDWYKI--LG  380 (486)
T ss_pred             hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhhHHHH--hh
Confidence            99999999999999999999999999999999999999999999999866 6777777666554 55566677776  45


Q ss_pred             HHHHHHHHHHHHHHHHccccccc
Q psy5660         175 KKEEKEKERVLQIIRERKIKLAT  197 (337)
Q Consensus       175 ~~~~~~~~~l~~al~~rgi~~~~  197 (337)
                      ..+.+...+++++++.+.+.+||
T Consensus       381 i~~~as~~eikkayrk~AL~~Hp  403 (486)
T KOG0550|consen  381 ISRNASDDEIKKAYRKLALVHHP  403 (486)
T ss_pred             hhhhcccchhhhHHHHHHHHhCC
Confidence            55667788899999999999998

>KOG0543|consensus

Probab=99.80  E-value=1.6e-18  Score=161.74  Aligned_cols=127  Identities=24%  Similarity=0.291  Sum_probs=114.4

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC-----------chHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD-----------NDVNAQLYNNRAASNFFLKNYRSCLTDCQIA  105 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~-----------~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A  105 (337)
                      ..+.|...++.||.+|+.|+|..|+..|.+|+..-...           ..+.-.++.|+|+|+++++.|..|+..|+++
T Consensus       204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv  283 (397)
T KOG0543|consen  204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV  283 (397)
T ss_pred             HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence            45788999999999999999999999999999864321           1356789999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy5660         106 LKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEI  163 (337)
Q Consensus       106 l~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  163 (337)
                      |.++|+|+||+||+|+|++.+|+|+.|+..|+++++++|+|+.+...+..+.++.++.
T Consensus       284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~  341 (397)
T KOG0543|consen  284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY  341 (397)
T ss_pred             HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998888887654433

>KOG0548|consensus

Probab=99.79  E-value=8.3e-19  Score=167.62  Aligned_cols=117  Identities=31%  Similarity=0.519  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      +.|...++.||.+|+.|+|..|+.+|++||..+|+    .+.+|+|||+||.+||++..|+.||+.+++++|++.++|+|
T Consensus       356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~----Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~R  431 (539)
T KOG0548|consen  356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE----DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLR  431 (539)
T ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHH
Confidence            56899999999999999999999999999999999    56999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      .|.|+..+.+|+.|++.|+.++++||++.++...+.+|...
T Consensus       432 Kg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  432 KGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988764

>KOG4648|consensus

Probab=99.75  E-value=5.2e-18  Score=154.53  Aligned_cols=117  Identities=24%  Similarity=0.283  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ..+..+|++||.||++|+|++||.||+++|.+.|.    ++.+|.|||.+|++++.|..|..||..|+.+|..++|||-|
T Consensus        95 ~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~----NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSR  170 (536)
T KOG4648|consen   95 KKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPH----NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSR  170 (536)
T ss_pred             HhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCC----CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Confidence            45667899999999999999999999999999998    56999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +|.+...+|+..+|.+.|+.+|++.|++.++...++.+...
T Consensus       171 R~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl  211 (536)
T KOG4648|consen  171 RMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSL  211 (536)
T ss_pred             HHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcch
Confidence            99999999999999999999999999999998887776543

>KOG0547|consensus

Probab=99.73  E-value=6.2e-17  Score=153.19  Aligned_cols=131  Identities=27%  Similarity=0.371  Sum_probs=108.7

Q ss_pred             CChhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHH
Q psy5660          18 MSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRS   97 (337)
Q Consensus        18 ~~~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~   97 (337)
                      ..|+.+-..++.-    +.....|.++|++||.+|+.|+|++||++|++||+++|+    .++.|+|||+||..+|+|.+
T Consensus        96 gep~~~~~~a~~~----e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~----epiFYsNraAcY~~lgd~~~  167 (606)
T KOG0547|consen   96 GEPDEEQKKAMLK----EERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD----EPIFYSNRAACYESLGDWEK  167 (606)
T ss_pred             CCcchhhhhccCh----HHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC----CchhhhhHHHHHHHHhhHHH
Confidence            3455555555543    455788999999999999999999999999999999998    46999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHH
Q psy5660          98 CLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP--TDSTVIDLRTSCI  157 (337)
Q Consensus        98 Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P--~~~~~~~~l~~~~  157 (337)
                      .+.||.+||+++|+++||++|+|.++..+|++++|+.... ++.|.-  +|..+.....++.
T Consensus       168 Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~t-v~ci~~~F~n~s~~~~~eR~L  228 (606)
T KOG0547|consen  168 VIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVT-VLCILEGFQNASIEPMAERVL  228 (606)
T ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhh-HHHHhhhcccchhHHHHHHHH
Confidence            9999999999999999999999999999999999998876 333332  3344444444443

>KOG0548|consensus

Probab=99.72  E-value=3.3e-17  Score=156.79  Aligned_cols=113  Identities=27%  Similarity=0.426  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA  120 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a  120 (337)
                      |..++++||.+|..|+|+.|+.+|++||.++|.    +.++|+||++||..+|+|.+|+.|..+.++++|.++|+|.|.|
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~----nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~G   77 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPT----NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKG   77 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCC----ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhH
Confidence            467899999999999999999999999999999    7799999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660         121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus       121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      .++..+|+|++|+..|.++|+++|+|+.+...+..+.
T Consensus        78 aa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   78 AALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            9999999999999999999999999999999998887

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.69  E-value=2.2e-15  Score=125.66  Aligned_cols=128  Identities=19%  Similarity=0.170  Sum_probs=116.8

Q ss_pred             ChhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHH
Q psy5660          19 SPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC   98 (337)
Q Consensus        19 ~~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~A   98 (337)
                      -|+--.-+++..+|      +   .+...|..++..|+|++|+.+|.+++..+|.    ...+|.++|.++..+|++++|
T Consensus        11 ~~~~~~~~al~~~p------~---~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~A   77 (144)
T PRK15359         11 IPEDILKQLLSVDP------E---TVYASGYASWQEGDYSRAVIDFSWLVMAQPW----SWRAHIALAGTWMMLKEYTTA   77 (144)
T ss_pred             CHHHHHHHHHHcCH------H---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHHhhHHHH
Confidence            35566777888887      2   2557899999999999999999999999999    669999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660          99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus        99 l~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +..+++|+.++|++..+++++|.|+..+|++++|+..|+++++++|++......++.++..
T Consensus        78 ~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359         78 INFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM  138 (144)
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998888777654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.66  E-value=1.9e-15  Score=144.33  Aligned_cols=116  Identities=25%  Similarity=0.397  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA  120 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a  120 (337)
                      |..++.+|+.+|..|+|..|+.+|++||+++|+    +..+|.+||.|++++|++.+|+.++++|+.++|.+..+|+++|
T Consensus         2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~----~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg   77 (356)
T PLN03088          2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPN----NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG   77 (356)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            345788999999999999999999999999998    5689999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660         121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH  160 (337)
Q Consensus       121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~  160 (337)
                      .+++.+|+|++|+.+|+++++++|++..+...+..+..+.
T Consensus        78 ~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         78 TACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998888886554

>KOG4642|consensus

Probab=99.60  E-value=5.3e-15  Score=129.04  Aligned_cols=119  Identities=24%  Similarity=0.339  Sum_probs=106.7

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVK  116 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~  116 (337)
                      -.+.|..++++||.+|..++|..|+.+|.+||.++|.    .+.+|.|||.||+++++++.+..||++|++++|+.++++
T Consensus         6 ~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~----~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h   81 (284)
T KOG4642|consen    6 MSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPT----VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAH   81 (284)
T ss_pred             cchHHHHHHhccccccchhhhchHHHHHHHHHhcCCC----cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHH
Confidence            3478999999999999999999999999999999998    669999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHH
Q psy5660         117 LRAAQCLFHLKKFEDCTHLCDELLKEN-----PTDSTVIDLRTSCINK  159 (337)
Q Consensus       117 ~r~a~a~~~lg~~~eA~~~~~~al~l~-----P~~~~~~~~l~~~~~~  159 (337)
                      |.+|.+++....|++|+..++++..+.     |.-..+-..+..++.+
T Consensus        82 ~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~  129 (284)
T KOG4642|consen   82 YFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK  129 (284)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence            999999999999999999999997662     1224566666666655

>KOG4626|consensus

Probab=99.59  E-value=8.8e-15  Score=141.99  Aligned_cols=156  Identities=16%  Similarity=0.215  Sum_probs=132.5

Q ss_pred             ccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy5660          27 QLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL  106 (337)
Q Consensus        27 aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al  106 (337)
                      |+++||      ..+.+|.+.||++-..+.|+.|+.+|.+|+.+.|+    .+.++.|+|-+|+..|..+-||+.|++||
T Consensus       244 AvkldP------~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn----~A~a~gNla~iYyeqG~ldlAI~~Ykral  313 (966)
T KOG4626|consen  244 AVKLDP------NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN----HAVAHGNLACIYYEQGLLDLAIDTYKRAL  313 (966)
T ss_pred             hhcCCC------cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc----chhhccceEEEEeccccHHHHHHHHHHHH
Confidence            677888      88999999999999999999999999999999999    88999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5660         107 KLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK---HKEILRNERKQAQQVKKEEKEKER  183 (337)
Q Consensus       107 ~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~---~~~~~~~~~k~~~~~~~~~~~~~~  183 (337)
                      +++|+.+.||.++|.++-..|+..+|.++|.++|.+.|+++.+...++.+.+.   ...+-+-+.++...-..-.+.-..
T Consensus       314 ~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nN  393 (966)
T KOG4626|consen  314 ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNN  393 (966)
T ss_pred             hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999988765   333445555554433333444444


Q ss_pred             HHHHHHHcc
Q psy5660         184 VLQIIRERK  192 (337)
Q Consensus       184 l~~al~~rg  192 (337)
                      |...++++|
T Consensus       394 La~i~kqqg  402 (966)
T KOG4626|consen  394 LASIYKQQG  402 (966)
T ss_pred             HHHHHHhcc
Confidence            555555444

>KOG0376|consensus

Probab=99.56  E-value=4.6e-15  Score=141.11  Aligned_cols=118  Identities=21%  Similarity=0.315  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .|+.++++||.+|+.+.|+.|+..|++||+++|+    ++.++.|||.++++.++|..|+.|+.+||+++|.+.|+|+|+
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpn----ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rr   78 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPN----CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRR   78 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCc----ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeec
Confidence            5788999999999999999999999999999999    789999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHK  161 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~  161 (337)
                      |.+++.++++.+|...++....+.|+.+.+...+.+|.....
T Consensus        79 g~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs  120 (476)
T KOG0376|consen   79 GTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVS  120 (476)
T ss_pred             cHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998877643

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.56  E-value=1.7e-13  Score=112.09  Aligned_cols=123  Identities=20%  Similarity=0.230  Sum_probs=112.0

Q ss_pred             hccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660          26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA  105 (337)
Q Consensus        26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A  105 (337)
                      +++..+|      +.+......|..+++.|++++|+..|++++..+|.    +..++.++|.++..+|++.+|+..++++
T Consensus         8 ~~l~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~~   77 (135)
T TIGR02552         8 DLLGLDS------EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY----NSRYWLGLAACCQMLKEYEEAIDAYALA   77 (135)
T ss_pred             HHHcCCh------hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566665      56677899999999999999999999999999998    5699999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         106 LKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       106 l~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      ++++|.+...++.+|.++..+|++++|+.+++++++++|++........++..
T Consensus        78 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  130 (135)
T TIGR02552        78 AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEA  130 (135)
T ss_pred             HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999887776665543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0624|consensus

Probab=99.50  E-value=1.7e-13  Score=125.21  Aligned_cols=174  Identities=13%  Similarity=0.101  Sum_probs=149.2

Q ss_pred             HHHhhccccCCCCCChH------HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCH
Q psy5660          22 VEGLQQLKYDPLENTPE------ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNY   95 (337)
Q Consensus        22 lealqaL~~dp~~~~~~------e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~   95 (337)
                      -+--.+|++|||...+-      .......+-+......++|.++++.+.+.++.+|..+.+.-..+--++.|+..-+++
T Consensus       244 ~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~  323 (504)
T KOG0624|consen  244 KEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF  323 (504)
T ss_pred             HHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence            34445788998776542      233344456667788899999999999999999986655555555678899999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy5660          96 RSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK-HKEILRNERKQAQQV  174 (337)
Q Consensus        96 ~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~-~~~~~~~~~k~~~~~  174 (337)
                      .+||..|.++|.++|+++.++.-+|.+|+.-..|++|+..|+++++.+++|..+...+.++++. ++...|+++|.  +.
T Consensus       324 ~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKI--LG  401 (504)
T KOG0624|consen  324 GEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKI--LG  401 (504)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHH--hh
Confidence            9999999999999999999999999999999999999999999999999999999999999887 55667899998  66


Q ss_pred             HHHHHHHHHHHHHHHHccccccc
Q psy5660         175 KKEEKEKERVLQIIRERKIKLAT  197 (337)
Q Consensus       175 ~~~~~~~~~l~~al~~rgi~~~~  197 (337)
                      .++.+.+.++.+|+++...+|||
T Consensus       402 VkRnAsKqEI~KAYRKlAqkWHP  424 (504)
T KOG0624|consen  402 VKRNASKQEITKAYRKLAQKWHP  424 (504)
T ss_pred             hcccccHHHHHHHHHHHHHhcCC
Confidence            77888999999999999999999

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.50  E-value=8.1e-13  Score=135.12  Aligned_cols=107  Identities=25%  Similarity=0.342  Sum_probs=99.2

Q ss_pred             ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660          36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV  115 (337)
Q Consensus        36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka  115 (337)
                      +....|..++++||.+|+.|+|+.|+.+|+++|...|+     ..+|.|+|.|++++|+|++|+.+|++||+++|++.++
T Consensus       122 ~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a  196 (615)
T TIGR00990       122 ERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKA  196 (615)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHH
Confidence            34567889999999999999999999999999999985     3689999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660         116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDS  147 (337)
Q Consensus       116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~  147 (337)
                      ++++|.++..+|++++|+..+..++.+++.+.
T Consensus       197 ~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~  228 (615)
T TIGR00990       197 LNRRANAYDGLGKYADALLDLTASCIIDGFRN  228 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence            99999999999999999999998888876554

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.49  E-value=1.7e-12  Score=108.10  Aligned_cols=114  Identities=11%  Similarity=0.031  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      +.-+.+...|..++..|++++|...|+-....+|.    +...|.|+|.|+..+|+|.+||..|.+|+.++|+++.++++
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~----~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~  108 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW----SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA  108 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence            66778888999999999999999999999999999    77999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      .|.|++.+|+.+.|.+.++.++...-.+++-..+..++
T Consensus       109 ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A  146 (157)
T PRK15363        109 AAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRA  146 (157)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHH
Confidence            99999999999999999999999875555544444443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.48  E-value=2.1e-12  Score=120.49  Aligned_cols=124  Identities=18%  Similarity=0.177  Sum_probs=111.2

Q ss_pred             ChhHHHhh-ccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHH
Q psy5660          19 SPLVEGLQ-QLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRS   97 (337)
Q Consensus        19 ~~~lealq-aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~   97 (337)
                      ...++-+. .|...  ..++...+..+.++|..+...|++.+|+..|+++++.+|+    .+.+|.++|.++..+|++++
T Consensus        43 e~~i~~~~~~l~~~--~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~----~~~a~~~lg~~~~~~g~~~~  116 (296)
T PRK11189         43 EVILARLNQILASR--DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD----MADAYNYLGIYLTQAGNFDA  116 (296)
T ss_pred             HHHHHHHHHHHccc--cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHCCCHHH
Confidence            34455553 34332  2566788999999999999999999999999999999998    56999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q psy5660          98 CLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDST  148 (337)
Q Consensus        98 Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~  148 (337)
                      |+..+++|++++|++..+++++|.++...|++++|++.++++++++|++..
T Consensus       117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999999999999999999999999999873

>KOG0545|consensus

Probab=99.47  E-value=1.5e-12  Score=114.23  Aligned_cols=112  Identities=21%  Similarity=0.276  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc--------ccCCch------HHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKI--------KCADND------VNAQLYNNRAASNFFLKNYRSCLTDCQ  103 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~--------~p~~~~------~~~~~~~nra~~~~~lg~~~~Al~d~~  103 (337)
                      ......+.+.||.+|+.|+|++|...|..||..        +|.+++      ....++.|.+.|++..|+|-++++.|.
T Consensus       175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s  254 (329)
T KOG0545|consen  175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS  254 (329)
T ss_pred             hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence            345668899999999999999999999999853        565543      466789999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660         104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV  149 (337)
Q Consensus       104 ~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~  149 (337)
                      ..|...|.|+||||++|+|+...=+.++|...+.++|+++|.-...
T Consensus       255 eiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  255 EILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             HHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            9999999999999999999999999999999999999999985443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.45  E-value=1.7e-12  Score=114.03  Aligned_cols=128  Identities=20%  Similarity=0.269  Sum_probs=111.3

Q ss_pred             CChhHHHhhc-cccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHH-HHccC-
Q psy5660          18 MSPLVEGLQQ-LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASN-FFLKN-   94 (337)
Q Consensus        18 ~~~~lealqa-L~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~-~~lg~-   94 (337)
                      ....+.+++. |..+|      +.++.+...|..+...|++++|+.+|++|+.+.|+    +..++.++|.++ ...|+ 
T Consensus        55 ~~~~i~~l~~~L~~~P------~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~----~~~~~~~lA~aL~~~~g~~  124 (198)
T PRK10370         55 PEAQLQALQDKIRANP------QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE----NAELYAALATVLYYQAGQH  124 (198)
T ss_pred             HHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCC
Confidence            3445555554 77788      67889999999999999999999999999999999    569999999985 67787 


Q ss_pred             -HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660          95 -YRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTS  155 (337)
Q Consensus        95 -~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~  155 (337)
                       +.+|+..+++|++++|++..+++.+|.++..+|++++|+.+++++++++|.+..-...+..
T Consensus       125 ~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~  186 (198)
T PRK10370        125 MTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVES  186 (198)
T ss_pred             CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence             5999999999999999999999999999999999999999999999999876544444433

>KOG4626|consensus

Probab=99.42  E-value=1.3e-12  Score=127.14  Aligned_cols=115  Identities=16%  Similarity=0.189  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      +.|.++.+.|..+-.+|++++|+.+|.+||.++|.    .+.+|+|+|..+-.+|+...|+.++.+||.++|....|+-+
T Consensus       386 ~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~----fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsN  461 (966)
T KOG4626|consen  386 EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT----FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSN  461 (966)
T ss_pred             hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch----HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhh
Confidence            44444445555555555555555555555555554    44555555555555555555555555555555555555555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      +|.++...|+..+|++.|+.+|++.|+.+.+.-.+..+.
T Consensus       462 Lasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l  500 (966)
T KOG4626|consen  462 LASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL  500 (966)
T ss_pred             HHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence            555555555555555555555555555555544444433

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.36  E-value=5.2e-11  Score=121.83  Aligned_cols=117  Identities=20%  Similarity=0.162  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ..+..+...|..++..|++++|+..|.++++.+|.    ....|.++|.++..+|++++|+.++++|++++|++..+++.
T Consensus       329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  404 (615)
T TIGR00990       329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR----VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYH  404 (615)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            67788999999999999999999999999999998    56889999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +|.++..+|++++|+.+|+++++++|++..+...++.+...
T Consensus       405 lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~  445 (615)
T TIGR00990       405 RAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK  445 (615)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998888777776654

>PRK12370 invasion protein regulator; Provisional

Probab=99.32  E-value=8.4e-11  Score=118.86  Aligned_cols=126  Identities=13%  Similarity=0.157  Sum_probs=111.0

Q ss_pred             HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660          24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ  103 (337)
Q Consensus        24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~  103 (337)
                      +-+++..+|      ..+..+...|..+...|++++|+..|.+|++++|+    ++.+|+++|.++..+|++++|+..++
T Consensus       327 ~~~Al~ldP------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~----~~~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        327 AIKATELDH------NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI----SADIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             HHHHHhcCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            445677887      66778889999999999999999999999999999    56889999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Q psy5660         104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN-PTDSTVIDLRTSCINK  159 (337)
Q Consensus       104 ~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~-P~~~~~~~~l~~~~~~  159 (337)
                      +|++++|.+..+++.++.+++..|++++|+.++++++... |+++.+...++.+...
T Consensus       397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~  453 (553)
T PRK12370        397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSL  453 (553)
T ss_pred             HHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHh
Confidence            9999999999888778888888999999999999999875 7788777777776544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.32  E-value=6.7e-12  Score=90.69  Aligned_cols=66  Identities=27%  Similarity=0.476  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCC
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK-NYRSCLTDCQIALKLKP  110 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg-~~~~Al~d~~~Al~l~P  110 (337)
                      |..+...|+.++..|+|++|+.+|+++|+.+|+    ++.+|+|+|.|+..+| ++.+|+.++++|++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~----~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN----NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            445555555555555555555555555555555    4455555555555555 45555555555555554

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.30  E-value=7.9e-11  Score=93.43  Aligned_cols=111  Identities=17%  Similarity=0.164  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKVKL  117 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka~~  117 (337)
                      +..+...|..+++.|+|.+|+..|.+++...|+++. ...++.++|.++++.|+++.|+..++.++..+|++   ..+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY-APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL   80 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence            356788999999999999999999999999886432 35788999999999999999999999999999886   57899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660         118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDL  152 (337)
Q Consensus       118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~  152 (337)
                      .+|.++..+|++++|+..++++++..|++..+...
T Consensus        81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  115 (119)
T TIGR02795        81 KLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA  115 (119)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence            99999999999999999999999999998876554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.29  E-value=8.9e-11  Score=124.68  Aligned_cols=115  Identities=12%  Similarity=0.090  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA  120 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a  120 (337)
                      +..+...|..+.+.|++++|+..|.+++..+|+    +..++.|+|.++..+|++++|+..+++|++++|++..+++++|
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd----~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA  684 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPN----NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLA  684 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            456777888888888888888888888888887    4577888888888888888888888888888888888888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      .++..+|++++|+.+|+++++++|++..+....+.+...
T Consensus       685 ~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~  723 (987)
T PRK09782        685 YVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQ  723 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHH
Confidence            888888888888888888888888887777666665544

>PRK12370 invasion protein regulator; Provisional

Probab=99.28  E-value=1.9e-10  Score=116.23  Aligned_cols=117  Identities=19%  Similarity=0.112  Sum_probs=101.1

Q ss_pred             hccccCCCCCChHHHHHHHHHHHHHHH---------HhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHH
Q psy5660          26 QQLKYDPLENTPEELATTYKDEGNFNF---------KCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYR   96 (337)
Q Consensus        26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~---------k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~   96 (337)
                      +++..||      ..+..+...|..++         ..+++.+|+..+++|++++|+    ++.++.++|.++...|+++
T Consensus       286 ~Al~ldP------~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~----~~~a~~~lg~~~~~~g~~~  355 (553)
T PRK12370        286 QCVNMSP------NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN----NPQALGLLGLINTIHSEYI  355 (553)
T ss_pred             HHHhcCC------ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHccCHH
Confidence            4566676      44556666666554         234589999999999999999    5688999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          97 SCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDL  152 (337)
Q Consensus        97 ~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~  152 (337)
                      +|+..+++|++++|++..+++.+|.++...|++++|+.+++++++++|.+......
T Consensus       356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~  411 (553)
T PRK12370        356 VGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT  411 (553)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence            99999999999999999999999999999999999999999999999998765433

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.28  E-value=1.5e-11  Score=88.78  Aligned_cols=67  Identities=19%  Similarity=0.331  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLK-KFEDCTHLCDELLKENP  144 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg-~~~eA~~~~~~al~l~P  144 (337)
                      ++..|.++|.+++.+|+|.+|+..+++|++++|+++.+++++|.|+..+| ++++|+++++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            46889999999999999999999999999999999999999999999999 79999999999999998

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.23  E-value=3e-10  Score=97.33  Aligned_cols=111  Identities=21%  Similarity=0.247  Sum_probs=96.4

Q ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q psy5660          35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK  114 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k  114 (337)
                      .+....+..+...|..+...|++++|+.+|.+++...++... ...++.++|.++.++|++++|+..+.+|+.+.|.+..
T Consensus        29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  107 (172)
T PRK02603         29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND-RSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS  107 (172)
T ss_pred             ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence            455688899999999999999999999999999998765332 4578999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCC--------------HHHHHHHHHHHHhhCCCC
Q psy5660         115 VKLRAAQCLFHLKK--------------FEDCTHLCDELLKENPTD  146 (337)
Q Consensus       115 a~~r~a~a~~~lg~--------------~~eA~~~~~~al~l~P~~  146 (337)
                      ++..+|.++..+|+              +.+|++++++++.++|++
T Consensus       108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            99999999999988              566666666666666665

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.22  E-value=3.8e-10  Score=94.02  Aligned_cols=93  Identities=10%  Similarity=0.106  Sum_probs=86.5

Q ss_pred             HHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5660          60 AIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDEL  139 (337)
Q Consensus        60 Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~a  139 (337)
                      -...|+++++++|+      . +.++|.++..+|++++|+..|++++.++|.+..+++.+|.++..+|++++|+.+|+++
T Consensus        12 ~~~~~~~al~~~p~------~-~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A   84 (144)
T PRK15359         12 PEDILKQLLSVDPE------T-VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHA   84 (144)
T ss_pred             HHHHHHHHHHcCHH------H-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            35689999999986      2 5679999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHH
Q psy5660         140 LKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       140 l~l~P~~~~~~~~l~~~~~~  159 (337)
                      +.++|++..+...++.+...
T Consensus        85 l~l~p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         85 LMLDASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HhcCCCCcHHHHHHHHHHHH
Confidence            99999999999999988765

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.21  E-value=2.7e-10  Score=84.36  Aligned_cols=99  Identities=28%  Similarity=0.474  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660          43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQC  122 (337)
Q Consensus        43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a  122 (337)
                      .+...|..++..|++.+|+..++++++..|.    ...++.++|.++...|+++.|+..+++++...|.+..+++.+|.+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   77 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD----NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA   77 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence            4678899999999999999999999999987    347889999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCC
Q psy5660         123 LFHLKKFEDCTHLCDELLKENPT  145 (337)
Q Consensus       123 ~~~lg~~~eA~~~~~~al~l~P~  145 (337)
                      +...|++++|...+.++++++|.
T Consensus        78 ~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          78 YYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHhHHHHHHHHHHHHccCCC
Confidence            99999999999999999988774

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.21  E-value=4.7e-11  Score=89.95  Aligned_cols=83  Identities=28%  Similarity=0.432  Sum_probs=74.9

Q ss_pred             hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q psy5660          54 CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCT  133 (337)
Q Consensus        54 ~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~  133 (337)
                      +|+|+.|+..|.++++..|.++  ...++.++|.|++++|+|.+|+..+++ ++.+|.+...++..|+|+..+|++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            6899999999999999999744  567788899999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHH
Q psy5660         134 HLCDEL  139 (337)
Q Consensus       134 ~~~~~a  139 (337)
                      ..++++
T Consensus        79 ~~l~~~   84 (84)
T PF12895_consen   79 KALEKA   84 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            999875

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.18  E-value=2.2e-09  Score=93.90  Aligned_cols=113  Identities=12%  Similarity=0.156  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--CCCHHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK--PDYPKVKLR  118 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~--P~~~ka~~r  118 (337)
                      +..+...|..++..|++++|+..|.++++..|.    ...++.++|.++...|++++|+..+.+++...  +.....++.
T Consensus        65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  140 (234)
T TIGR02521        65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPN----NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN  140 (234)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH
Confidence            345555666666666666666666666666555    23555666666666666666666666666542  334455566


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      +|.++...|++++|...+.++++.+|++..+...+..+.
T Consensus       141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  179 (234)
T TIGR02521       141 AGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY  179 (234)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence            666666666666666666666666666655554444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0624|consensus

Probab=99.18  E-value=3.9e-10  Score=103.52  Aligned_cols=109  Identities=18%  Similarity=0.285  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ..++.+.+.|+.++..|++.+|+..|-.|++.+|+    +-.+++.||.+|+.+|+-..|+.|+.++|++.|+..-|...
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~----~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ  111 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN----NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ  111 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch----hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence            66788899999999999999999999999999998    77999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVID  151 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~  151 (337)
                      +|.+++.+|.+++|...|+..|..+|++.....
T Consensus       112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~e  144 (504)
T KOG0624|consen  112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLE  144 (504)
T ss_pred             hchhhhhcccHHHHHHHHHHHHhcCCCcchhHH
Confidence            999999999999999999999999997754433

>PLN02789 farnesyltranstransferase

Probab=99.18  E-value=5.3e-10  Score=105.08  Aligned_cols=116  Identities=16%  Similarity=0.044  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCH--HHHHHHHHHHHhhCCCCHHH
Q psy5660          39 ELATTYKDEGNFNFKCN-KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNY--RSCLTDCQIALKLKPDYPKV  115 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g-~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~--~~Al~d~~~Al~l~P~~~ka  115 (337)
                      +....+..+|..+.+.| ++++|+.++++++..+|.    +..+|.+|+.+..++|+.  .+++..++++++++|+|..|
T Consensus        69 ~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk----nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~A  144 (320)
T PLN02789         69 GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK----NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHA  144 (320)
T ss_pred             hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc----chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHH
Confidence            45567778888888887 578999999999998888    567899999888888874  67888888999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      |..++.++..+|++++|+++|.++++++|.|..+...+..+..
T Consensus       145 W~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~  187 (320)
T PLN02789        145 WSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT  187 (320)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence            9999999999999999999999999999999888877776643

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.18  E-value=3e-09  Score=93.08  Aligned_cols=116  Identities=15%  Similarity=0.110  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL  117 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~  117 (337)
                      ...+..+...|..++..|++++|+..+.++++..|.    ...++.++|.++..+|++++|+..+++++++.|.+..+++
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  103 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD----DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN  103 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence            356888999999999999999999999999999988    5688999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHH
Q psy5660         118 RAAQCLFHLKKFEDCTHLCDELLKEN--PTDSTVIDLRTSCI  157 (337)
Q Consensus       118 r~a~a~~~lg~~~eA~~~~~~al~l~--P~~~~~~~~l~~~~  157 (337)
                      .+|.++...|++++|+..+++++...  +........++.+.
T Consensus       104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  145 (234)
T TIGR02521       104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA  145 (234)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            99999999999999999999999863  33344444444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1155|consensus

Probab=99.17  E-value=1.6e-09  Score=102.84  Aligned_cols=126  Identities=17%  Similarity=0.203  Sum_probs=96.1

Q ss_pred             HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660          24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ  103 (337)
Q Consensus        24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~  103 (337)
                      .-+||++||      ....++--.|-++...++-..|+..|++|++++|.|    -.+|+.+|.+|--++..-=|+-.++
T Consensus       353 FkRALkLNp------~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D----yRAWYGLGQaYeim~Mh~YaLyYfq  422 (559)
T KOG1155|consen  353 FKRALKLNP------KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD----YRAWYGLGQAYEIMKMHFYALYYFQ  422 (559)
T ss_pred             HHHHHhcCc------chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh----HHHHhhhhHHHHHhcchHHHHHHHH
Confidence            344677777      666777777888888888888888888888888873    4777778888888888777888888


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       104 ~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +|+++.|++...|..+|.||.++++.++|+++|++++...-.+..+...++++.+.
T Consensus       423 kA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~  478 (559)
T KOG1155|consen  423 KALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE  478 (559)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888887766666666666666554

>KOG1126|consensus

Probab=99.17  E-value=8.6e-11  Score=115.56  Aligned_cols=117  Identities=12%  Similarity=0.121  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ..++.|...||.+--+++++.||+++.+||+++|+    .+-+|.-+|.=+.....|+.|...++.||.++|.+..|||-
T Consensus       419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~----faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYG  494 (638)
T KOG1126|consen  419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR----FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYG  494 (638)
T ss_pred             CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc----cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHh
Confidence            66788999999999999999999999999999998    55777777877778888888888888888888888888888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +|.+|++.++++.|.-.+++|++++|.|..+.-..+.++.+
T Consensus       495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~  535 (638)
T KOG1126|consen  495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ  535 (638)
T ss_pred             hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH
Confidence            88888888888888888888888888887777666666554

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.15  E-value=2.3e-09  Score=110.06  Aligned_cols=126  Identities=4%  Similarity=-0.115  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA  120 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a  120 (337)
                      +..+...|......|+|++|...+..+++..|+    +..++.|+|.+..+++++++|+..+++++..+|++..+++.+|
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd----~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a  161 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD----SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA  161 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            667788999999999999999999999999999    7799999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---HHHHHHHHHHH
Q psy5660         121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK---HKEILRNERKQ  170 (337)
Q Consensus       121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~---~~~~~~~~~k~  170 (337)
                      .++.++|++++|+..|++++..+|++..++..++.+.+.   ..++...+++.
T Consensus       162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a  214 (694)
T PRK15179        162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAG  214 (694)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999999999998888887765   33444444444

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.14  E-value=1.5e-09  Score=115.50  Aligned_cols=108  Identities=18%  Similarity=0.187  Sum_probs=99.0

Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q psy5660          47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHL  126 (337)
Q Consensus        47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~l  126 (337)
                      .+......|++++|+..|.++++.+|+     ..+|.|+|.++.++|++++|+..+++|+.++|++..++..+|.++...
T Consensus       582 La~~l~~~Gr~~eAl~~~~~AL~l~P~-----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~  656 (987)
T PRK09782        582 LHAQRYIPGQPELALNDLTRSLNIAPS-----ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDS  656 (987)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            344445559999999999999999984     368899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         127 KKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       127 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      |++++|+..|+++++++|++..+...++.+...
T Consensus       657 G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~  689 (987)
T PRK09782        657 GDIAQSREMLERAHKGLPDDPALIRQLAYVNQR  689 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999988888766

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.13  E-value=1.9e-09  Score=94.65  Aligned_cols=102  Identities=13%  Similarity=0.165  Sum_probs=94.7

Q ss_pred             hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HhcCC--HH
Q psy5660          54 CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCL-FHLKK--FE  130 (337)
Q Consensus        54 ~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~-~~lg~--~~  130 (337)
                      .++.++++..+.+++..+|+    +...|.++|.+++.+|+++.|+..+++|++++|++..++..+|.++ ...|+  ++
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~----~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~  127 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQ----NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTP  127 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence            56789999999999999999    5689999999999999999999999999999999999999999985 67787  59


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         131 DCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       131 eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +|.+.++++++++|++..+..+++.+...
T Consensus       128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~  156 (198)
T PRK10370        128 QTREMIDKALALDANEVTALMLLASDAFM  156 (198)
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence            99999999999999999999999887665

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.12  E-value=2.7e-09  Score=99.57  Aligned_cols=105  Identities=18%  Similarity=0.098  Sum_probs=96.9

Q ss_pred             CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy5660          55 NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTH  134 (337)
Q Consensus        55 g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~  134 (337)
                      +..+.++..+++.|...+.+++..+..|+++|.++..+|++..|+.++++|++++|+++.+|+.+|.++..+|++++|+.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            46788999999999877766666889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         135 LCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       135 ~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      .|+++++++|++..+...++.+...
T Consensus       120 ~~~~Al~l~P~~~~a~~~lg~~l~~  144 (296)
T PRK11189        120 AFDSVLELDPTYNYAYLNRGIALYY  144 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999988888877644

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.11  E-value=4.2e-09  Score=89.83  Aligned_cols=110  Identities=17%  Similarity=0.128  Sum_probs=93.1

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVK  116 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~  116 (337)
                      ....+..+...|..++..|+|++|+..|.+++.+.++. ...+.+|.|+|.++..+|++++|+..|.+|+.++|.+..++
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~  109 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP-YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL  109 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence            34678899999999999999999999999999886642 22457899999999999999999999999999999999999


Q ss_pred             HHHHHHHH-------hcCCHH-------HHHHHHHHHHhhCCCCH
Q psy5660         117 LRAAQCLF-------HLKKFE-------DCTHLCDELLKENPTDS  147 (337)
Q Consensus       117 ~r~a~a~~-------~lg~~~-------eA~~~~~~al~l~P~~~  147 (337)
                      ..+|.++.       .+|+++       +|+.++++++..+|++.
T Consensus       110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            99999888       777877       55555556667777654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.11  E-value=6.3e-09  Score=93.26  Aligned_cols=118  Identities=14%  Similarity=0.134  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK---  114 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k---  114 (337)
                      ...+..+...|..++..|+|+.|+..|.+++...|.++. ...++.++|.+++.+|++++|+..++++++..|++..   
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY-AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            366788999999999999999999999999999997542 3467899999999999999999999999999998876   


Q ss_pred             HHHHHHHHHHhc--------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         115 VKLRAAQCLFHL--------KKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       115 a~~r~a~a~~~l--------g~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      +++.+|.++...        |++++|+..+++++..+|++......+..+
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~  158 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM  158 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH
Confidence            799999999887        899999999999999999997665544433

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1155|consensus

Probab=99.11  E-value=2.3e-09  Score=101.77  Aligned_cols=110  Identities=15%  Similarity=0.134  Sum_probs=105.7

Q ss_pred             HHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q psy5660          46 DEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFH  125 (337)
Q Consensus        46 ~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~  125 (337)
                      --||-|--.++.++|+.+|++|+.++|.    ...+|.-+|.=++.++|-..|+..+++|++++|.+.+|||.+|++|.-
T Consensus       335 iIaNYYSlr~eHEKAv~YFkRALkLNp~----~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei  410 (559)
T KOG1155|consen  335 IIANYYSLRSEHEKAVMYFKRALKLNPK----YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI  410 (559)
T ss_pred             eehhHHHHHHhHHHHHHHHHHHHhcCcc----hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence            4578888888999999999999999999    789999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         126 LKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       126 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ++...=|+-+|++++++-|++..+...+++|..+
T Consensus       411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k  444 (559)
T KOG1155|consen  411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEK  444 (559)
T ss_pred             hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999877

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.10  E-value=5.8e-09  Score=91.27  Aligned_cols=102  Identities=17%  Similarity=0.026  Sum_probs=88.6

Q ss_pred             ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660          36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV  115 (337)
Q Consensus        36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka  115 (337)
                      .+.+.+....++|..|+..|++..|...+.+||+.+|+    ...+|.-||..|.++|..+.|-+.|++|++++|++...
T Consensus        30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs----~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdV  105 (250)
T COG3063          30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS----YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDV  105 (250)
T ss_pred             cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccch
Confidence            45578889999999999999999999999999999998    66888899999999999999999999999999998887


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660         116 KLRAAQCLFHLKKFEDCTHLCDELLK  141 (337)
Q Consensus       116 ~~r~a~a~~~lg~~~eA~~~~~~al~  141 (337)
                      +.+.|.-++..|++++|..++++++.
T Consensus       106 LNNYG~FLC~qg~~~eA~q~F~~Al~  131 (250)
T COG3063         106 LNNYGAFLCAQGRPEEAMQQFERALA  131 (250)
T ss_pred             hhhhhHHHHhCCChHHHHHHHHHHHh
Confidence            77777777777777777777777775

>KOG1126|consensus

Probab=99.09  E-value=1.4e-09  Score=107.21  Aligned_cols=121  Identities=13%  Similarity=0.224  Sum_probs=73.4

Q ss_pred             hccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660          26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA  105 (337)
Q Consensus        26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A  105 (337)
                      +|+..||      ..+-+|--+|-++.....|+.|..+|+.||..+|.    +-.+|+.+|.+|+++++++.|.-.+++|
T Consensus       446 RAiQldp------~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r----hYnAwYGlG~vy~Kqek~e~Ae~~fqkA  515 (638)
T KOG1126|consen  446 RAIQLDP------RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR----HYNAWYGLGTVYLKQEKLEFAEFHFQKA  515 (638)
T ss_pred             HhhccCC------ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch----hhHHHHhhhhheeccchhhHHHHHHHhh
Confidence            3455665      45556666666666666666666666666666665    4456666666666666666666666666


Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         106 LKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       106 l~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      +++||.|..-....|..+.++|+.++|+..+++|+.+||.|+-.....+.+
T Consensus       516 ~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i  566 (638)
T KOG1126|consen  516 VEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI  566 (638)
T ss_pred             hcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence            666666666666666666666666666666666666666665444444433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.08  E-value=3.3e-09  Score=92.85  Aligned_cols=121  Identities=15%  Similarity=0.141  Sum_probs=107.7

Q ss_pred             hccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660          26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA  105 (337)
Q Consensus        26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A  105 (337)
                      ++|..||      +...++.-++-.|.+.|..+.|-+.|++|++++|+    +..+++|-|.-...+|.|++|...+++|
T Consensus        60 kAL~~DP------s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~----~GdVLNNYG~FLC~qg~~~eA~q~F~~A  129 (250)
T COG3063          60 KALEHDP------SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN----NGDVLNNYGAFLCAQGRPEEAMQQFERA  129 (250)
T ss_pred             HHHHhCc------ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC----ccchhhhhhHHHHhCCChHHHHHHHHHH
Confidence            4677788      77888899999999999999999999999999999    6799999999999999999999999999


Q ss_pred             HhhCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660         106 LKLKP---DYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus       106 l~l~P---~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      +. +|   ....++-++|.|.++.|+++.|..+++++|+++|+++....-+.+..
T Consensus       130 l~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~  183 (250)
T COG3063         130 LA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH  183 (250)
T ss_pred             Hh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHH
Confidence            96 44   44689999999999999999999999999999999987765554443

>KOG0547|consensus

Probab=99.08  E-value=3e-09  Score=101.63  Aligned_cols=113  Identities=22%  Similarity=0.249  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL  117 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~  117 (337)
                      +..|+++.-.|..+|-.|++..|...+.++|.++|.+.    .+|..||++|+...+-.+-..++++|..+||.|+..||
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~----~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYy  398 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN----SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYY  398 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc----hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhH
Confidence            34588999999999999999999999999999999854    66999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660         118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT  154 (337)
Q Consensus       118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  154 (337)
                      .+|+.++-+++|++|+..|+++++++|+|.-..-.+.
T Consensus       399 HRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~  435 (606)
T KOG0547|consen  399 HRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLC  435 (606)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHH
Confidence            9999999999999999999999999999865544443

>PRK15331 chaperone protein SicA; Provisional

Probab=99.07  E-value=3.7e-09  Score=88.56  Aligned_cols=108  Identities=11%  Similarity=0.098  Sum_probs=97.7

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVK  116 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~  116 (337)
                      +++.-+.....|-.+|.+|+|++|...|+-....+|.    +...+..+|+|+..+|+|++|+..|..|..++++++...
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~----n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~  108 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY----NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV  108 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence            3466778888999999999999999999999999998    557899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660         117 LRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV  149 (337)
Q Consensus       117 ~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~  149 (337)
                      |+.|.|++.+|+...|..++..++. .|.+..+
T Consensus       109 f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l  140 (165)
T PRK15331        109 FFTGQCQLLMRKAAKARQCFELVNE-RTEDESL  140 (165)
T ss_pred             chHHHHHHHhCCHHHHHHHHHHHHh-CcchHHH
Confidence            9999999999999999999999988 4554433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.06  E-value=6.9e-10  Score=79.13  Aligned_cols=64  Identities=17%  Similarity=0.352  Sum_probs=48.8

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660          84 NRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS  147 (337)
Q Consensus        84 nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~  147 (337)
                      .+|..++..|+|++|+..++++++.+|.+..+++.+|.++..+|++++|+.+|+++++++|+|+
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4677777778888888888888888888888888888888888888888888888888877764

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.06  E-value=5.5e-09  Score=107.68  Aligned_cols=113  Identities=16%  Similarity=0.174  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHhCcHHH----HHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRN----AIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV  115 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~----Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka  115 (337)
                      .+..+...|..++..|++.+    |+..|+++++.+|+    ...++.++|.++..+|++++|+..+++++.++|++..+
T Consensus       245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~----~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a  320 (656)
T PRK15174        245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD----NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYV  320 (656)
T ss_pred             CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            35566678888888888875    78888888888887    45788888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      +..+|.++..+|++++|+..|++++..+|++......++.+
T Consensus       321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~a  361 (656)
T PRK15174        321 RAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAA  361 (656)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            88888888888888888888888888888876544433333

>KOG1125|consensus

Probab=99.05  E-value=4.2e-10  Score=109.28  Aligned_cols=103  Identities=16%  Similarity=0.184  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ..++..--+|-.++-.|+|++|+.||+.||..+|+    +..+|+.+|+.+-.-.+..+||..|++|+++.|.++++.|+
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn----d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN  503 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN----DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN  503 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc----hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh
Confidence            34566678999999999999999999999999999    66999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPT  145 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~  145 (337)
                      +|.+++.+|.|++|..++-.+|.+.+.
T Consensus       504 lgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  504 LGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999998765

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.05  E-value=1e-08  Score=105.62  Aligned_cols=111  Identities=16%  Similarity=0.124  Sum_probs=101.7

Q ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHH----HHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          45 KDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRS----CLTDCQIALKLKPDYPKVKLRAA  120 (337)
Q Consensus        45 k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~----Al~d~~~Al~l~P~~~ka~~r~a  120 (337)
                      ...|..++..|++++|+..|.++++..|+    ...++.++|.++..+|++.+    |+..+++|++++|++..++..+|
T Consensus       216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~----~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg  291 (656)
T PRK15174        216 GLAVDTLCAVGKYQEAIQTGESALARGLD----GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYA  291 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            34578888999999999999999999998    46889999999999999996    89999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      .++...|++++|+..++++++++|++..+...++.+...
T Consensus       292 ~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~  330 (656)
T PRK15174        292 DALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ  330 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999888877776544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.05  E-value=8e-09  Score=84.28  Aligned_cols=94  Identities=16%  Similarity=0.168  Sum_probs=87.4

Q ss_pred             HHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660          62 INYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLK  141 (337)
Q Consensus        62 ~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~  141 (337)
                      +.|.+++..+|.    +.....++|.+++..|++.+|+..+++++.++|.+..+++++|.++..+|++++|+.++++++.
T Consensus         4 ~~~~~~l~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   79 (135)
T TIGR02552         4 ATLKDLLGLDSE----QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA   79 (135)
T ss_pred             hhHHHHHcCChh----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            468899999998    5577889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHH
Q psy5660         142 ENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       142 l~P~~~~~~~~l~~~~~~  159 (337)
                      ++|.+......++.+...
T Consensus        80 ~~p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        80 LDPDDPRPYFHAAECLLA   97 (135)
T ss_pred             cCCCChHHHHHHHHHHHH
Confidence            999999998888887665

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1308|consensus

Probab=99.04  E-value=1.4e-10  Score=106.40  Aligned_cols=113  Identities=19%  Similarity=0.202  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      +.|...+-++..++..|.++.|++.|+.||.++|.    .+.+|.+||.++++++....|+.||..|++++|+..+.|-.
T Consensus       112 eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~----~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf  187 (377)
T KOG1308|consen  112 DQANDKKVQASEALNDGEFDTAIELFTSAIELNPP----LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF  187 (377)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhcccccccccCCc----hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch
Confidence            56777788888899999999999999999999999    88999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      ++.+...+|++.+|..++..+.+++-+ ......+..+
T Consensus       188 rg~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV  224 (377)
T KOG1308|consen  188 RGYAERLLGNWEEAAHDLALACKLDYD-EANSATLKEV  224 (377)
T ss_pred             hhHHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHh
Confidence            999999999999999999999998632 3333444443

>KOG0550|consensus

Probab=99.04  E-value=3.1e-10  Score=106.30  Aligned_cols=110  Identities=27%  Similarity=0.388  Sum_probs=98.9

Q ss_pred             HHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHH
Q psy5660          22 VEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTD  101 (337)
Q Consensus        22 lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d  101 (337)
                      ..+++..-..  ...+...|+..+++||..+++++|..|+..|+.||++.|+    ++..|.|||++++.+|+|++|+.+
T Consensus        32 ~~~~~~~~s~--~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd----~a~yy~nRAa~~m~~~~~~~a~~d  105 (486)
T KOG0550|consen   32 TAATSPEYSF--SQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPD----NASYYSNRAATLMMLGRFEEALGD  105 (486)
T ss_pred             hhccCccccc--cchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCcc----chhhhchhHHHHHHHHhHhhcccc
Confidence            3444444433  2567789999999999999999999999999999999999    689999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy5660         102 CQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCD  137 (337)
Q Consensus       102 ~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~  137 (337)
                      +++.++++|...+++.|.++|+..++..-+|...++
T Consensus       106 ar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~  141 (486)
T KOG0550|consen  106 ARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK  141 (486)
T ss_pred             hhhheecCCCccccccchhhhhhhhHHHHHHHHHhh
Confidence            999999999999999999999999999999986665

>KOG1173|consensus

Probab=99.02  E-value=2.7e-09  Score=103.49  Aligned_cols=128  Identities=17%  Similarity=0.214  Sum_probs=110.2

Q ss_pred             hhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC-ch--HHHHHHHHHHHHHHHccCHHHHHHH
Q psy5660          25 LQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD-ND--VNAQLYNNRAASNFFLKNYRSCLTD  101 (337)
Q Consensus        25 lqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~-~~--~~~~~~~nra~~~~~lg~~~~Al~d  101 (337)
                      .+|+...|      ...-.+.+.|-++|..+.|.+|+.++..++...+.. ++  .-...+.|+|.++.+++.|.+||..
T Consensus       404 ~~A~ai~P------~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~  477 (611)
T KOG1173|consen  404 KQALAIAP------SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY  477 (611)
T ss_pred             HHHHhcCC------CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence            45666666      556778899999999999999999999998543321 11  2456799999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         102 CQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       102 ~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      +++||.+.|+++.+|-..|.++..+|+++.|++.|.++|.++|+|.-+..+++.+.+
T Consensus       478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE  534 (611)
T ss_pred             HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988888876654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.99  E-value=1.8e-08  Score=110.25  Aligned_cols=125  Identities=10%  Similarity=0.110  Sum_probs=104.5

Q ss_pred             ccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHH----------HHHHHHHHHHHHHccCHH
Q psy5660          27 QLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVN----------AQLYNNRAASNFFLKNYR   96 (337)
Q Consensus        27 aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~----------~~~~~nra~~~~~lg~~~   96 (337)
                      ++..+|      ..+..+...|..+++.|++++|+.+|+++++..|++....          ..+..++|.++++.|++.
T Consensus       295 aL~~~P------~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~  368 (1157)
T PRK11447        295 AVRANP------KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLA  368 (1157)
T ss_pred             HHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHH
Confidence            455555      4467788899999999999999999999999988754211          112345688889999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660          97 SCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus        97 ~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      +|+..+++|++++|.+..+++.+|.++...|++++|+++|+++++++|++..+...+..+.
T Consensus       369 eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~  429 (1157)
T PRK11447        369 QAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY  429 (1157)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988776665554

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.99  E-value=1.3e-08  Score=104.73  Aligned_cols=121  Identities=7%  Similarity=-0.134  Sum_probs=108.1

Q ss_pred             hccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660          26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA  105 (337)
Q Consensus        26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A  105 (337)
                      +++.++|      +.+.++.+.++.+.+.+++++|+..+.+++..+|+    ++..++++|.|..++|+|++|+..|+++
T Consensus       111 ~~~~~~P------d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~----~~~~~~~~a~~l~~~g~~~~A~~~y~~~  180 (694)
T PRK15179        111 GIHQRFP------DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS----SAREILLEAKSWDEIGQSEQADACFERL  180 (694)
T ss_pred             HHHhhCC------CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            3466777      78899999999999999999999999999999999    7799999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Q psy5660         106 LKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP-TDSTVIDLRTSC  156 (337)
Q Consensus       106 l~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P-~~~~~~~~l~~~  156 (337)
                      +..+|++.+++..+|.++..+|+.++|...|++++.... ..+.+...+.++
T Consensus       181 ~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  232 (694)
T PRK15179        181 SRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDL  232 (694)
T ss_pred             HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHH
Confidence            999999999999999999999999999999999998853 444434444443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.97  E-value=1.2e-07  Score=90.99  Aligned_cols=117  Identities=11%  Similarity=-0.022  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-----
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP-----  113 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~-----  113 (337)
                      ..+..+...|..+++.|++++|+..|.++++..|.    ...++.+++.++.+.|++++|+..++++++.+|.+.     
T Consensus       105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  180 (389)
T PRK11788        105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDF----AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIA  180 (389)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcc----hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHH
Confidence            34455666777777777777777777777776554    445666677777777777777777777766666542     


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         114 KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ..+..+|.++...|++++|+..++++++++|++..+...++.+...
T Consensus       181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  226 (389)
T PRK11788        181 HFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALA  226 (389)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH
Confidence            2344566666777777777777777777777666665555555443

>PLN02789 farnesyltranstransferase

Probab=98.96  E-value=2.4e-08  Score=93.87  Aligned_cols=127  Identities=9%  Similarity=0.022  Sum_probs=106.3

Q ss_pred             HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc-CHHHHHHHH
Q psy5660          24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK-NYRSCLTDC  102 (337)
Q Consensus        24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg-~~~~Al~d~  102 (337)
                      .+-+|.|.+      +..+.+--.--.+.+.+++.+|+..++++|.++|.    +.++|.+|+.++..+| ++.+++..+
T Consensus        26 ~~~~i~y~~------~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~----~ytaW~~R~~iL~~L~~~l~eeL~~~   95 (320)
T PLN02789         26 PVVPIAYTP------EFREAMDYFRAVYASDERSPRALDLTADVIRLNPG----NYTVWHFRRLCLEALDADLEEELDFA   95 (320)
T ss_pred             cccceeeCH------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch----hHHHHHHHHHHHHHcchhHHHHHHHH
Confidence            444566643      33333333333456678999999999999999999    6799999999999999 689999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660         103 QIALKLKPDYPKVKLRAAQCLFHLKKF--EDCTHLCDELLKENPTDSTVIDLRTSCINKH  160 (337)
Q Consensus       103 ~~Al~l~P~~~ka~~r~a~a~~~lg~~--~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~  160 (337)
                      +++++.+|++..+|..++.++..+|+.  ++++.+++++++++|.|-.+...++.+....
T Consensus        96 ~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l  155 (320)
T PLN02789         96 EDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTL  155 (320)
T ss_pred             HHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence            999999999999999999999999974  7899999999999999999988888776653

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.95  E-value=4.9e-09  Score=96.73  Aligned_cols=117  Identities=17%  Similarity=0.204  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ..+..+...|+.+.+.|++++|+.+|.+|++.+|+    +..+..+++.++...|++.++...+....+..|+++..+..
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~----~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPD----DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDA  219 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHH
Confidence            45677788888888889999999999999999888    44677778888888888888888787777777778778888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +|.++..+|++++|+.+++++++.+|+|+.....++.+...
T Consensus       220 la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~  260 (280)
T PF13429_consen  220 LAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ  260 (280)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred             HHHHhcccccccccccccccccccccccccccccccccccc
Confidence            89999999999999999999999999998888888887665

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.94  E-value=5.2e-08  Score=86.82  Aligned_cols=132  Identities=15%  Similarity=0.138  Sum_probs=112.4

Q ss_pred             CChhHHHhhccc-cCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHH
Q psy5660          18 MSPLVEGLQQLK-YDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYR   96 (337)
Q Consensus        18 ~~~~lealqaL~-~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~   96 (337)
                      ..+-+.+++.+. +.|      .....+..+|-..++.|+|..|+..+.++....|+    ...+|+-+|.++.++|+++
T Consensus        82 a~~~l~~~~~~~~~~~------~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~----d~~~~~~lgaaldq~Gr~~  151 (257)
T COG5010          82 ADSSLAVLQKSAIAYP------KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT----DWEAWNLLGAALDQLGRFD  151 (257)
T ss_pred             ccchHHHHhhhhccCc------ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC----ChhhhhHHHHHHHHccChh
Confidence            334455555533 333      34445556999999999999999999999999999    5589999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660          97 SCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus        97 ~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      .|-..+.+|+++.|+.+.++-++|..++-.|+++.|...+..+...-+.+..+...+..+...
T Consensus       152 ~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~  214 (257)
T COG5010         152 EARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGL  214 (257)
T ss_pred             HHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999998888888888877776654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.93  E-value=7.9e-09  Score=73.59  Aligned_cols=64  Identities=22%  Similarity=0.301  Sum_probs=59.6

Q ss_pred             HHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q psy5660          46 DEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP  113 (337)
Q Consensus        46 ~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~  113 (337)
                      .+|..+++.|+|++|+..|+++++..|.    +..++..+|.|+..+|++++|+..++++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPD----NPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTT----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5799999999999999999999999998    789999999999999999999999999999999874

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.92  E-value=1.1e-07  Score=91.21  Aligned_cols=115  Identities=11%  Similarity=-0.046  Sum_probs=100.3

Q ss_pred             ccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy5660          27 QLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL  106 (337)
Q Consensus        27 aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al  106 (337)
                      ++..+|      ..+..+...|+.++..|++.+|+..+++++...+........++.++|.++...|++++|+..+.+++
T Consensus        61 al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l  134 (389)
T PRK11788         61 MLKVDP------ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLV  134 (389)
T ss_pred             HHhcCc------ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            455565      45678889999999999999999999999986443333355788999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660         107 KLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS  147 (337)
Q Consensus       107 ~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~  147 (337)
                      +.+|.+..++..++.++...|++++|++.++++++.+|.+.
T Consensus       135 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  175 (389)
T PRK11788        135 DEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL  175 (389)
T ss_pred             cCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc
Confidence            99999999999999999999999999999999999888763

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.92  E-value=5.1e-08  Score=89.16  Aligned_cols=112  Identities=8%  Similarity=0.012  Sum_probs=97.2

Q ss_pred             HHHHHHHHHH-HHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---CHHHHH
Q psy5660          42 TTYKDEGNFN-FKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD---YPKVKL  117 (337)
Q Consensus        42 ~~~k~~Gn~~-~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~---~~ka~~  117 (337)
                      ....+.+..+ ++.|+|++|+..|.+.+...|+.. ..+.+++.+|.+++..|+|.+|+..++++++..|+   ...+++
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~-~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST-YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            4556666665 678999999999999999999754 24578899999999999999999999999998887   468899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660         118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT  154 (337)
Q Consensus       118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  154 (337)
                      .+|.++..+|++++|...|+++++..|++..+.....
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~  258 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQK  258 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence            9999999999999999999999999999886655443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=2.7e-08  Score=90.58  Aligned_cols=128  Identities=17%  Similarity=0.219  Sum_probs=109.5

Q ss_pred             ChhHHHhh-ccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc---C
Q psy5660          19 SPLVEGLQ-QLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK---N   94 (337)
Q Consensus        19 ~~~lealq-aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg---~   94 (337)
                      +..+..|+ .|..||      +.++.+.-.|..|+..|++..|...|.+|+++.|+    ++.++.-.|.+++...   .
T Consensus       139 ~~l~a~Le~~L~~nP------~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~----n~~~~~g~aeaL~~~a~~~~  208 (287)
T COG4235         139 EALIARLETHLQQNP------GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD----NPEILLGLAEALYYQAGQQM  208 (287)
T ss_pred             HHHHHHHHHHHHhCC------CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCcc
Confidence            34455555 377788      78899999999999999999999999999999999    5577777887777553   4


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660          95 YRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus        95 ~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      -.++...+++|+++||.|+.+.+.+|..+++.|+|.+|+..++..+...|.+..-..+..+.
T Consensus       209 ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~  270 (287)
T COG4235         209 TAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS  270 (287)
T ss_pred             cHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence            67788999999999999999999999999999999999999999999999887666555443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.91  E-value=6.6e-08  Score=101.17  Aligned_cols=120  Identities=19%  Similarity=0.219  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC-------------------------------chHHHHHHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD-------------------------------NDVNAQLYNNRAA   87 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~-------------------------------~~~~~~~~~nra~   87 (337)
                      ..+..+...|..+++.|+|++|+..|.++++..|.+                               ......++..+|.
T Consensus        54 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  133 (899)
T TIGR02917        54 NDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGL  133 (899)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHH
Confidence            344566667777777777777777777777655432                               1123455666777


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660          88 SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus        88 ~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      ++..+|++++|+..+++++..+|++..+++.+|.++...|++++|+..++++++.+|.+..+...++.+..
T Consensus       134 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (899)
T TIGR02917       134 AYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLL  204 (899)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777666666655543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.89  E-value=1.4e-07  Score=84.53  Aligned_cols=119  Identities=14%  Similarity=0.159  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHhhCCC
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL--------KNYRSCLTDCQIALKLKPD  111 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l--------g~~~~Al~d~~~Al~l~P~  111 (337)
                      ....+...|..+++.|++++|+..|.++++..|+++.. ..+++++|.++..+        |++..|+..+++++..+|+
T Consensus        69 ~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  147 (235)
T TIGR03302        69 AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA-DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN  147 (235)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch-HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence            44567889999999999999999999999999986643 34688899999987        8999999999999999999


Q ss_pred             CHHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHH
Q psy5660         112 YPKVK-----------------LRAAQCLFHLKKFEDCTHLCDELLKENPTDS---TVIDLRTSCINK  159 (337)
Q Consensus       112 ~~ka~-----------------~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~---~~~~~l~~~~~~  159 (337)
                      +..++                 +.+|.+++..|++.+|+..+++++...|+++   .+...++.+...
T Consensus       148 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~  215 (235)
T TIGR03302       148 SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK  215 (235)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH
Confidence            86442                 4678889999999999999999999988764   555666665544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.89  E-value=7.1e-08  Score=100.92  Aligned_cols=118  Identities=14%  Similarity=0.067  Sum_probs=107.1

Q ss_pred             ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660          36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV  115 (337)
Q Consensus        36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka  115 (337)
                      .+...+..+...|..++..|++++|+..|.++++.+|+    ...++..+|.+++..|++.+|+..++++++.+|.+..+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  195 (899)
T TIGR02917       120 DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR----SLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDA  195 (899)
T ss_pred             CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH
Confidence            44567888999999999999999999999999999998    44788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660         116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus       116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      ++.+|.++...|++++|+.+|++++.++|++..+...+..+.
T Consensus       196 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~  237 (899)
T TIGR02917       196 LLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATIL  237 (899)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999987766665554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.88  E-value=3.5e-08  Score=103.51  Aligned_cols=115  Identities=12%  Similarity=0.072  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ..+..+...|..+...|++.+|+..|+++++..|.    +..++.++|.++...|++.+|+..++++++.+|++.. ++.
T Consensus        47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~  121 (765)
T PRK10049         47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ----NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLA  121 (765)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHH
Confidence            44667889999999999999999999999999998    4577889999999999999999999999999999999 999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      +|.++...|++++|+..++++++++|++..+...+..+..
T Consensus       122 la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~  161 (765)
T PRK10049        122 LAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR  161 (765)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999988776666543

>KOG1310|consensus

Probab=98.86  E-value=1.1e-08  Score=98.65  Aligned_cols=108  Identities=27%  Similarity=0.324  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhhCCCCHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL---KNYRSCLTDCQIALKLKPDYPKV  115 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l---g~~~~Al~d~~~Al~l~P~~~ka  115 (337)
                      +.++.++++||..|-.+....|+..|.+++...|.    ...+|.|||+++++.   |+--.|+.||..|+++||...||
T Consensus       372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~----~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka  447 (758)
T KOG1310|consen  372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD----AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA  447 (758)
T ss_pred             HHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc----hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence            78899999999999999999999999999999998    789999999999975   57778999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660         116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVI  150 (337)
Q Consensus       116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~  150 (337)
                      +++++.|+..++++.+|+++...+....|.+....
T Consensus       448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~  482 (758)
T KOG1310|consen  448 HFRLARALNELTRYLEALSCHWALQMSFPTDVARQ  482 (758)
T ss_pred             HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhh
Confidence            99999999999999999999887777788665443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.85  E-value=5.8e-08  Score=106.28  Aligned_cols=103  Identities=11%  Similarity=0.034  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA  120 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a  120 (337)
                      +..+...|..+.+.|++++|+..|+++++..|+    +..++.++|.++..+|++++|+..++++++.+|++..++.++|
T Consensus       603 ~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~----~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la  678 (1157)
T PRK11447        603 TRIDLTLADWAQQRGDYAAARAAYQRVLTREPG----NADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVA  678 (1157)
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            345677899999999999999999999999998    5588899999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660         121 QCLFHLKKFEDCTHLCDELLKENPTDS  147 (337)
Q Consensus       121 ~a~~~lg~~~eA~~~~~~al~l~P~~~  147 (337)
                      .++..+|++++|++.|++++...|++.
T Consensus       679 ~~~~~~g~~~eA~~~~~~al~~~~~~~  705 (1157)
T PRK11447        679 LAWAALGDTAAAQRTFNRLIPQAKSQP  705 (1157)
T ss_pred             HHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence            999999999999999999998876554

>KOG0553|consensus

Probab=98.85  E-value=2.2e-08  Score=90.84  Aligned_cols=112  Identities=16%  Similarity=0.161  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660          80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus        80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      .-.-+-|.-+++-++|++|+..|.+||+++|+|+-.|.++|.+|.+||.|+.|+++|+.++++||....++..++.+.-.
T Consensus        82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~  161 (304)
T KOG0553|consen   82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA  161 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence            33445677788899999999999999999999999999999999999999999999999999999999998888887654


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy5660         160 ---HKEILRNERKQAQQVKKEEKEKERVLQIIRER  191 (337)
Q Consensus       160 ---~~~~~~~~~k~~~~~~~~~~~~~~l~~al~~r  191 (337)
                         ..++.+.++|....+...+.-+..|..+-+++
T Consensus       162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l  196 (304)
T KOG0553|consen  162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL  196 (304)
T ss_pred             cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence               34455556777666665555555554444443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.84  E-value=2.6e-07  Score=81.37  Aligned_cols=120  Identities=14%  Similarity=0.150  Sum_probs=94.3

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP---  113 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~---  113 (337)
                      |+..+..+...|..++..|+|.+|+..|++.+..-|..+ ....+...+|.++++.|+|..|+..+++-++..|++.   
T Consensus         1 p~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~   79 (203)
T PF13525_consen    1 PEDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP-YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD   79 (203)
T ss_dssp             ----HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence            456788999999999999999999999999999988754 4667888999999999999999999999999999875   


Q ss_pred             HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660         114 KVKLRAAQCLFHLK-----------KFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus       114 ka~~r~a~a~~~lg-----------~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      .|+|.+|.+++.+.           ...+|+..++..++..|++.-+......+.
T Consensus        80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~  134 (203)
T PF13525_consen   80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLA  134 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHH
Confidence            68999999987653           345899999999999999965554444433

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.83  E-value=2.3e-08  Score=72.77  Aligned_cols=69  Identities=29%  Similarity=0.494  Sum_probs=50.6

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          86 AASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT  154 (337)
Q Consensus        86 a~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  154 (337)
                      +.++++.++|+.|+..+++++.++|.++.+++.+|.++..+|++.+|+..++++++.+|++..+..+..
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            345667777777777777777777777777777777777777777777777777777777766655443

>KOG4555|consensus

Probab=98.82  E-value=1.1e-07  Score=76.24  Aligned_cols=104  Identities=14%  Similarity=0.073  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH----
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP----  113 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~----  113 (337)
                      -+.+..+--+|-.+...|+.+.|++.|+++|.+.|.    ++.+|+|||.++.-.|+..+|++|.++|+++.....    
T Consensus        40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~----raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtac  115 (175)
T KOG4555|consen   40 IKASRELELKAIALAEAGDLDGALELFGQALCLAPE----RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTAC  115 (175)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc----chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHH
Confidence            356667778899999999999999999999999999    789999999999999999999999999999965443    


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660         114 KVKLRAAQCLFHLKKFEDCTHLCDELLKENPT  145 (337)
Q Consensus       114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~  145 (337)
                      .+|..+|..|..+|+.+.|...|..+-++...
T Consensus       116 qa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  116 QAFVQRGLLYRLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence            57889999999999999999999999988544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.82  E-value=5.9e-07  Score=81.40  Aligned_cols=120  Identities=9%  Similarity=0.027  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP---KV  115 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~---ka  115 (337)
                      ..+..+...|..++..|+|++|+..|.+.+...|.. .....+..++|.+++++++|.+|+..+++.+++.|++.   .|
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a  108 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV  108 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence            355667889999999999999999999999999975 34556678999999999999999999999999999875   68


Q ss_pred             HHHHHHHHHhcCC------------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         116 KLRAAQCLFHLKK------------------FEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       116 ~~r~a~a~~~lg~------------------~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +|.+|.++..+++                  ..+|+..++..++..|++.-+.....++...
T Consensus       109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l  170 (243)
T PRK10866        109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFL  170 (243)
T ss_pred             HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH
Confidence            8999999766641                  3578899999999999986655544444333

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.81  E-value=1.5e-08  Score=72.70  Aligned_cols=66  Identities=24%  Similarity=0.473  Sum_probs=54.1

Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660          90 FFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTS  155 (337)
Q Consensus        90 ~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~  155 (337)
                      ++.|+|++|+..+++++..+|++..+++.+|.|++..|++++|...+++++..+|+++.+..++++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            467888888888888888888888888888888888888888888888888888888777766654

...

>KOG1125|consensus

Probab=98.79  E-value=6.1e-08  Score=94.44  Aligned_cols=132  Identities=14%  Similarity=0.109  Sum_probs=109.8

Q ss_pred             hhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc------------------------
Q psy5660          20 PLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN------------------------   75 (337)
Q Consensus        20 ~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~------------------------   75 (337)
                      ..|..-++++.||      +.++++.-+|......++-..||..+.++++++|++.                        
T Consensus       304 A~LafEAAVkqdP------~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~  377 (579)
T KOG1125|consen  304 AALAFEAAVKQDP------QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLD  377 (579)
T ss_pred             HHHHHHHHHhhCh------HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            4455555677777      7888888888888888888888888888888766510                        


Q ss_pred             -------------------------------------------------hHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy5660          76 -------------------------------------------------DVNAQLYNNRAASNFFLKNYRSCLTDCQIAL  106 (337)
Q Consensus        76 -------------------------------------------------~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al  106 (337)
                                                                       .+.+.++.-+|..|...|+|++|+++++.||
T Consensus       378 ~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL  457 (579)
T KOG1125|consen  378 KWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAAL  457 (579)
T ss_pred             HHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHH
Confidence                                                             1456777788999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660         107 KLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus       107 ~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      ..+|++...|-|+|-.+..-.+..+|+..|++||++.|+...++..++...
T Consensus       458 ~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~  508 (579)
T KOG1125|consen  458 QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC  508 (579)
T ss_pred             hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence            999999999999999999999999999999999999999877776666543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.79  E-value=2.2e-07  Score=79.19  Aligned_cols=111  Identities=14%  Similarity=0.051  Sum_probs=94.2

Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHH
Q psy5660          47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKVKLRAAQCL  123 (337)
Q Consensus        47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka~~r~a~a~  123 (337)
                      +.|.+|-.+.|..+...+..-+.....+.  .+.+|.+.|.++..+|++++|+..+++|+.+.|+.   ..+++++|.++
T Consensus         5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~   82 (168)
T CHL00033          5 QRNDNFIDKTFTIVADILLRILPTTSGEK--EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIH   82 (168)
T ss_pred             cccccccccccccchhhhhHhccCCchhH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Confidence            45667778888888888866666555433  78899999999999999999999999999997763   45899999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         124 FHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       124 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ..+|++++|+..|+++++++|.+......++.+...
T Consensus        83 ~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~  118 (168)
T CHL00033         83 TSNGEHTKALEYYFQALERNPFLPQALNNMAVICHY  118 (168)
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            999999999999999999999998887777766553

>KOG2076|consensus

Probab=98.78  E-value=2.8e-07  Score=93.83  Aligned_cols=114  Identities=18%  Similarity=0.084  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA  120 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a  120 (337)
                      ...+..++|.+|..|+++.|.....+.|.++|.    +..+|..+|.||..+|+..+|+...-.|--++|++..-|.+.|
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~----~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~la  214 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPR----NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLA  214 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc----chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence            678889999999999999999999999999998    6799999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      ....++|.+..|.-+|.++++.+|.|.+....+..+.+
T Consensus       215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~  252 (895)
T KOG2076|consen  215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQ  252 (895)
T ss_pred             HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            99999999999999999999999988776655555444

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.78  E-value=3.8e-08  Score=94.17  Aligned_cols=93  Identities=17%  Similarity=0.299  Sum_probs=83.6

Q ss_pred             HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660          24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ  103 (337)
Q Consensus        24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~  103 (337)
                      +-++|..+|      ..+..+..+|..+++.|+|++|+..+.+|+.++|.    .+.+|.++|.+++.+|+|.+|+..++
T Consensus        25 ~~~Al~~~P------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~----~~~a~~~lg~~~~~lg~~~eA~~~~~   94 (356)
T PLN03088         25 YTQAIDLDP------NNAELYADRAQANIKLGNFTEAVADANKAIELDPS----LAKAYLRKGTACMKLEEYQTAKAALE   94 (356)
T ss_pred             HHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            344677777      55788999999999999999999999999999998    66899999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhc
Q psy5660         104 IALKLKPDYPKVKLRAAQCLFHL  126 (337)
Q Consensus       104 ~Al~l~P~~~ka~~r~a~a~~~l  126 (337)
                      +|++++|++..+...++.|...+
T Consensus        95 ~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         95 KGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999988888876665

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.77  E-value=1.3e-07  Score=99.26  Aligned_cols=109  Identities=17%  Similarity=0.074  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      ....+...|..+...|++++|+..+++++...|.    +..++.++|.++...|++++|+..+++|+.++|++..+++.+
T Consensus       358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~----n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~  433 (765)
T PRK10049        358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG----NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ  433 (765)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence            3456678899999999999999999999999999    568999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDL  152 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~  152 (337)
                      |.+++.+|++++|...++++++..|+++.+..+
T Consensus       434 a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~  466 (765)
T PRK10049        434 AWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL  466 (765)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            999999999999999999999999999966553

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.76  E-value=2.1e-07  Score=76.42  Aligned_cols=117  Identities=12%  Similarity=0.133  Sum_probs=102.4

Q ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-
Q psy5660          35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP-  113 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~-  113 (337)
                      ..|...+..+...|...++.|+|..|++.++.....-|..+ ....+..+++-+|++.++|..|+..+++-|+++|++. 
T Consensus         4 ~~~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~-ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~   82 (142)
T PF13512_consen    4 VVPDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE-YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN   82 (142)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence            44556678889999999999999999999999888887543 3568889999999999999999999999999999986 


Q ss_pred             --HHHHHHHHHHHhcCC---------------HHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660         114 --KVKLRAAQCLFHLKK---------------FEDCTHLCDELLKENPTDSTVIDL  152 (337)
Q Consensus       114 --ka~~r~a~a~~~lg~---------------~~eA~~~~~~al~l~P~~~~~~~~  152 (337)
                        -|+|++|.+++....               ...|...++..++.-|++.-+...
T Consensus        83 vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA  138 (142)
T PF13512_consen   83 VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA  138 (142)
T ss_pred             ccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence              688999999999887               899999999999999998766543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.74  E-value=7e-07  Score=74.57  Aligned_cols=81  Identities=11%  Similarity=0.033  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      ...+|. .|.-++..|++++|...++.+..++|.+...|+.+|.|+..+|+|.+|+..|.+++.++|+++......+.|.
T Consensus        35 l~~lY~-~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~  113 (157)
T PRK15363         35 LNTLYR-YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY  113 (157)
T ss_pred             HHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            334444 8999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HH
Q psy5660         158 NK  159 (337)
Q Consensus       158 ~~  159 (337)
                      -.
T Consensus       114 L~  115 (157)
T PRK15363        114 LA  115 (157)
T ss_pred             HH
Confidence            76

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.71  E-value=9.1e-08  Score=69.55  Aligned_cols=70  Identities=26%  Similarity=0.396  Sum_probs=64.0

Q ss_pred             HHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660          48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ  121 (337)
Q Consensus        48 Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~  121 (337)
                      .+.+++.++|+.|+.++++++..+|+    ...++.++|.|+.++|++.+|+.+++++++.+|++..+...++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPD----DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcc----cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            46789999999999999999999999    55999999999999999999999999999999999887765543

>KOG2003|consensus

Probab=98.70  E-value=6.5e-08  Score=91.89  Aligned_cols=115  Identities=16%  Similarity=0.111  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .+.++.++||..|..|+|++|.+.|.+|+.-+..    ...+++|+|+.+..+|+.++|++++-+.-.+--+++.+++.+
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas----c~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qi  564 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS----CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQI  564 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH----HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            4567789999999999999999999999987665    668999999999999999999999988666666789999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      |.+|..+.+...|++++-++..+-|+++.++.-++.+..
T Consensus       565 aniye~led~aqaie~~~q~~slip~dp~ilskl~dlyd  603 (840)
T KOG2003|consen  565 ANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYD  603 (840)
T ss_pred             HHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhh
Confidence            999999999999999999999999999988877766544

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.69  E-value=8.4e-07  Score=75.94  Aligned_cols=95  Identities=17%  Similarity=0.133  Sum_probs=79.4

Q ss_pred             HHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5660          63 NYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKVKLRAAQCLFHLKKFEDCTHLCDEL  139 (337)
Q Consensus        63 ~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka~~r~a~a~~~lg~~~eA~~~~~~a  139 (337)
                      .+...+..++.+  ..+.++.++|.++...|++++|+..+++|+++.|+.   ..+++.+|.++..+|++++|+.+++++
T Consensus        21 ~~~~~~~~~~~~--~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a   98 (172)
T PRK02603         21 LILKILPINKKA--KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA   98 (172)
T ss_pred             HHHHHcccccHh--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344444444432  377889999999999999999999999999987763   478999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHH
Q psy5660         140 LKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       140 l~l~P~~~~~~~~l~~~~~~  159 (337)
                      ++++|++......++.+...
T Consensus        99 l~~~p~~~~~~~~lg~~~~~  118 (172)
T PRK02603         99 LELNPKQPSALNNIAVIYHK  118 (172)
T ss_pred             HHhCcccHHHHHHHHHHHHH
Confidence            99999998887777766544

>KOG0546|consensus

Probab=98.68  E-value=4.1e-08  Score=90.79  Aligned_cols=132  Identities=20%  Similarity=0.238  Sum_probs=113.9

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc-----------C----CchHHHHHHHHHHHHHHHccCHHHH
Q psy5660          34 ENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC-----------A----DNDVNAQLYNNRAASNFFLKNYRSC   98 (337)
Q Consensus        34 ~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p-----------~----~~~~~~~~~~nra~~~~~lg~~~~A   98 (337)
                      .....+.++..++.||..|+.++|+.|..-|.+++..-.           +    -..+...++.|.++|-++++++..|
T Consensus       215 ~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a  294 (372)
T KOG0546|consen  215 FDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGA  294 (372)
T ss_pred             cchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcc
Confidence            467778889999999999999999999999999986421           1    1234567888999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q psy5660          99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILR  165 (337)
Q Consensus        99 l~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  165 (337)
                      +..+..++..++...+|+||++.++..+.++++|++++..+....|++..+...+..+..+.....+
T Consensus       295 ~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~  361 (372)
T KOG0546|consen  295 RFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNR  361 (372)
T ss_pred             eeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998877776655444333

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.67  E-value=1.1e-06  Score=84.56  Aligned_cols=115  Identities=16%  Similarity=0.178  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA  120 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a  120 (337)
                      ....+-.+-..+..|+++.|...++..|...|+    +..++.-++.++++.++..+|++-+++|+.++|...-..+.+|
T Consensus       306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~----N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a  381 (484)
T COG4783         306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD----NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA  381 (484)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            334444555555556666666666665555555    3355555555555566666666666666666665555555556


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +++++.|++.+|+..++..+.-+|+++..+..++++...
T Consensus       382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~  420 (484)
T COG4783         382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE  420 (484)
T ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence            666666666666666666665566665555555555443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.67  E-value=9.1e-07  Score=78.98  Aligned_cols=111  Identities=10%  Similarity=0.086  Sum_probs=98.8

Q ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660          45 KDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLF  124 (337)
Q Consensus        45 k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~  124 (337)
                      ....+.+...|+-+.+....+++....|.+..    +..-.|..+++.|||..|+..+++|..++|+++++|.-+|.+|.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~----ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald  145 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRE----LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD  145 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHH----HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHH
Confidence            56777888889988888888888888888653    33338889999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         125 HLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       125 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ++|++++|...|.+++++.|+++.+...+....-.
T Consensus       146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L  180 (257)
T COG5010         146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL  180 (257)
T ss_pred             HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH
Confidence            99999999999999999999999998888876655

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.66  E-value=3.7e-07  Score=75.89  Aligned_cols=100  Identities=10%  Similarity=0.020  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      -........|..++..|+|++|+..|.+++...+ ++.+...+..++|.+++.+|+|++|+..++. +.-.+-...++..
T Consensus        46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~-d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~  123 (145)
T PF09976_consen   46 YAALAALQLAKAAYEQGDYDEAKAALEKALANAP-DPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAEL  123 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHH
Confidence            4466677889999999999999999999998764 4566778888899999999999999998866 3333444567778


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELL  140 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al  140 (337)
                      +|.++...|++++|+..|++++
T Consensus       124 ~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  124 LGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHhC
Confidence            8999999999999999998874

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.65  E-value=8.3e-08  Score=68.74  Aligned_cols=67  Identities=22%  Similarity=0.143  Sum_probs=60.1

Q ss_pred             HHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660          51 NFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ  121 (337)
Q Consensus        51 ~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~  121 (337)
                      +++.|+|++|+..|++++...|+    +..++.++|.|+++.|++++|...+.+++..+|++..++.-+|+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPD----NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTT----SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            46889999999999999999999    56888999999999999999999999999999998777766664

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.63  E-value=1.5e-07  Score=90.53  Aligned_cols=70  Identities=14%  Similarity=0.202  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK  109 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~  109 (337)
                      ..+..+.++|+.+++.|+|++|+.+|++||+++|++.+ ...+|+|+|.||..+|++++|+.++++|+++.
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae-A~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE-AQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            78899999999999999999999999999999998431 11569999999999999999999999999983

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.63  E-value=1e-06  Score=70.93  Aligned_cols=99  Identities=17%  Similarity=0.100  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---CHHHHHH
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD---YPKVKLR  118 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~---~~ka~~r  118 (337)
                      ....+.|..+-..|+.++|+.+|.++++...... ....++.++|.++..+|++++|+..+++++.-.|+   +......
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~-~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA-DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            4567889999999999999999999999765433 36689999999999999999999999999999888   7788888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHh
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLK  141 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~  141 (337)
                      +|.++..+|+.++|+.++-.++.
T Consensus        81 ~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   81 LALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999999987774

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.62  E-value=5.6e-07  Score=82.98  Aligned_cols=149  Identities=17%  Similarity=0.150  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ  121 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~  121 (337)
                      ..+......+...++++++...+.++.......  ..+.+|..+|.++.+.|+.++|+.++++|++++|++..+...++.
T Consensus       111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~  188 (280)
T PF13429_consen  111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAP--DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAW  188 (280)
T ss_dssp             -------H-HHHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            344455566778889999998888877544211  156888889999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy5660         122 CLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHK---EILRNERKQAQQVKKEEKEKERVLQIIRERK  192 (337)
Q Consensus       122 a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~---~~~~~~~k~~~~~~~~~~~~~~l~~al~~rg  192 (337)
                      ++...|+++++...++...+..|+++.+...++.+.....   ++-.-.++.....+........+..++...|
T Consensus       189 ~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g  262 (280)
T PF13429_consen  189 LLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAG  262 (280)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---
T ss_pred             HHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999998888888888777777776655422   2222223332223333344444555554444

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.61  E-value=7.7e-07  Score=80.22  Aligned_cols=113  Identities=15%  Similarity=0.117  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP---KVK  116 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~---ka~  116 (337)
                      .+....+.+-.+++.|+|..|...|..-|..-|+.. ..+.+++++|.+++.+|+|.+|...+..+++-.|++.   .++
T Consensus       140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~-~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal  218 (262)
T COG1729         140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNST-YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL  218 (262)
T ss_pred             chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence            445588999999999999999999999999999754 4678999999999999999999999999999988765   679


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660         117 LRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLR  153 (337)
Q Consensus       117 ~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l  153 (337)
                      +-+|.|...+|+-++|...++.+++--|+...+....
T Consensus       219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak  255 (262)
T COG1729         219 LKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK  255 (262)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            9999999999999999999999999999988775543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.61  E-value=1.1e-06  Score=92.13  Aligned_cols=110  Identities=14%  Similarity=0.048  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ..+....+++-..+++|+|..|+..|.++++.+|..+   +.++ -.+.++...|++.+|+..|++++.-+|.+..++..
T Consensus        32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~---~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~lla  107 (822)
T PRK14574         32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS---GQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLAS  107 (822)
T ss_pred             cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch---hhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence            4666777888888888888888888888888888742   1122 34444445555555555555555222222233333


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDL  152 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~  152 (337)
                      .|.++...|++++|++.|+++++.+|+|+.+...
T Consensus       108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~g  141 (822)
T PRK14574        108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISG  141 (822)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            3445555555555555555555555555544443

>KOG4162|consensus

Probab=98.61  E-value=3.9e-07  Score=91.48  Aligned_cols=106  Identities=13%  Similarity=0.011  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHH--HHHHHHhhCCCCHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT--DCQIALKLKPDYPKVK  116 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~--d~~~Al~l~P~~~ka~  116 (337)
                      ..+..|...|..+..+|+..+|.+.|..|+.++|++.    ....-+|.|+++.|+-+-|..  ....|+++||.|.+||
T Consensus       682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv----~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW  757 (799)
T KOG4162|consen  682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV----PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAW  757 (799)
T ss_pred             hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHH
Confidence            5678889999999999999999999999999999955    666779999999998888877  9999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q psy5660         117 LRAAQCLFHLKKFEDCTHLCDELLKENPTDST  148 (337)
Q Consensus       117 ~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~  148 (337)
                      |.+|.++..+|+.++|.++|+.++++++.++.
T Consensus       758 ~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  758 YYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            99999999999999999999999999988763

>KOG2002|consensus

Probab=98.60  E-value=8.8e-07  Score=90.90  Aligned_cols=118  Identities=11%  Similarity=0.118  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-HHHHHHHH
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY-PKVKLRAA  120 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~-~ka~~r~a  120 (337)
                      ..+.-.+|.+|-.|+|..+...+..|+...- ...+.+..++++|.+|..+|+|++|..+|.+|++.+|++ +-+++.+|
T Consensus       271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~-~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Glg  349 (1018)
T KOG2002|consen  271 VALNHLANHFYFKKDYERVWHLAEHAIKNTE-NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLG  349 (1018)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchh
Confidence            3444566777777778888777777777542 233567779999999999999999999999999999998 89999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660         121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH  160 (337)
Q Consensus       121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~  160 (337)
                      +.++..|+++.|+.++++.++..|++.+...+++.+....
T Consensus       350 Qm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~  389 (1018)
T KOG2002|consen  350 QMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS  389 (1018)
T ss_pred             HHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence            9999999999999999999999999999999888876554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.59  E-value=5.1e-07  Score=86.89  Aligned_cols=69  Identities=17%  Similarity=0.151  Sum_probs=64.9

Q ss_pred             cccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660          70 IKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV---KLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus        70 ~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka---~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                      .+|+    .+..|+|+|.+++++|+|++|+..|++||+++|++..+   ||++|.||..+|++++|+.++++++++
T Consensus        70 ~dP~----~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVK----TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3565    67999999999999999999999999999999999965   999999999999999999999999997

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.59  E-value=7.4e-07  Score=77.59  Aligned_cols=122  Identities=16%  Similarity=0.181  Sum_probs=109.9

Q ss_pred             hHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHH
Q psy5660          21 LVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT  100 (337)
Q Consensus        21 ~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~  100 (337)
                      .+.-+..+..- ..-++++.|.-+.++|+.|=..|-+.-|.-.+++++.+.|.    .+.+++-+|.-+..-|+|+.|.+
T Consensus        46 ~iarlsqlL~~-~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~----m~~vfNyLG~Yl~~a~~fdaa~e  120 (297)
T COG4785          46 ILARMSQILAS-RALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD----MPEVFNYLGIYLTQAGNFDAAYE  120 (297)
T ss_pred             HHHHHHHHHHh-ccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC----cHHHHHHHHHHHHhcccchHHHH
Confidence            34444444332 24688899999999999999999999999999999999999    67899999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660         101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS  147 (337)
Q Consensus       101 d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~  147 (337)
                      .++..+++||.+.-|+.++|.+++--|+|.-|.+.+.+-.+-||+++
T Consensus       121 aFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785         121 AFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             HhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence            99999999999999999999999999999999999999999999986

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.58  E-value=1.8e-06  Score=63.30  Aligned_cols=78  Identities=19%  Similarity=0.242  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660          81 LYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus        81 ~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      ++.++|.++...|++.+|+..++++++..|.+..+++.+|.++...|++++|+.++++++.+.|.+......++.+..
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence            578899999999999999999999999999999999999999999999999999999999999998866665555543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.58  E-value=1.8e-06  Score=90.66  Aligned_cols=144  Identities=14%  Similarity=0.057  Sum_probs=96.7

Q ss_pred             HHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q psy5660          46 DEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFH  125 (337)
Q Consensus        46 ~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~  125 (337)
                      .....+...|++.+|+.++++++.-.+.    ........|.++..+|+|++|+..++++++.+|+++.+++.++.++..
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~~p~n~----~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~  148 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQSSMNI----SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD  148 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Confidence            5555666778899999999998832222    334444457788888999999999999999999998888888888888


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q psy5660         126 LKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN---KHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIK  194 (337)
Q Consensus       126 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~---~~~~~~~~~~k~~~~~~~~~~~~~~l~~al~~rgi~  194 (337)
                      .++.++|+..++++...+|.+... ..+..+..   ...++....++..............+..++...|+.
T Consensus       149 ~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~  219 (822)
T PRK14574        149 AGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIV  219 (822)
T ss_pred             cCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Confidence            899999999999998888886655 33333331   111222233333333333344445556666666654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.57  E-value=4.7e-06  Score=80.22  Aligned_cols=117  Identities=15%  Similarity=0.001  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ..+-..--.|..+++.+++.+|++.+.+++.+.|+    ...+..|+|.++++.|++.+|+...+..+.-+|.++..|..
T Consensus       338 ~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~----~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~  413 (484)
T COG4783         338 DNPYYLELAGDILLEANKAKEAIERLKKALALDPN----SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDL  413 (484)
T ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHH
Confidence            44455567889999999999999999999999998    56999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +|++|..+|+-.+|...+..++.+..+-..+...+..+.++
T Consensus       414 LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         414 LAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999988777777777776655

>KOG2076|consensus

Probab=98.55  E-value=3.9e-06  Score=85.63  Aligned_cols=102  Identities=13%  Similarity=0.091  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ..+..|...|.++-.+|+..+|+.+...|-.++|+|.    ..|..+|.-..++|++.+|+-++.+||+++|.+.+.+++
T Consensus       171 ~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~----e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~e  246 (895)
T KOG2076|consen  171 RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY----ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYE  246 (895)
T ss_pred             cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHH
Confidence            5678999999999999999999999999999999964    889999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCC
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENP  144 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P  144 (337)
                      ++..+.++|++..|...+.+++.++|
T Consensus       247 rs~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  247 RSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.54  E-value=7.1e-06  Score=75.37  Aligned_cols=141  Identities=13%  Similarity=0.118  Sum_probs=113.6

Q ss_pred             CChhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc---------------------------
Q psy5660          18 MSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKI---------------------------   70 (337)
Q Consensus        18 ~~~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~---------------------------   70 (337)
                      .+-++--.|+|...| +-|-++...++.+.|..|+..|-|+.|...|+..++.                           
T Consensus        85 vDRAIRiHQ~L~~sp-dlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~  163 (389)
T COG2956          85 VDRAIRIHQTLLESP-DLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDV  163 (389)
T ss_pred             HHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHH
Confidence            344566677777766 5677788888888888888888888777777776652                           


Q ss_pred             -------ccCC-chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660          71 -------KCAD-NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus        71 -------~p~~-~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                             .+.. .-..+..|+-+|..++.-.+.+.|+....+|++.||+++.|-+.+|.+.+..|+|..|++.++.+++.
T Consensus       164 A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ  243 (389)
T COG2956         164 AERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ  243 (389)
T ss_pred             HHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh
Confidence                   2222 12467889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC-HHHHHHHHHHHHH
Q psy5660         143 NPTD-STVIDLRTSCINK  159 (337)
Q Consensus       143 ~P~~-~~~~~~l~~~~~~  159 (337)
                      ||+. .++...+..|...
T Consensus       244 n~~yl~evl~~L~~~Y~~  261 (389)
T COG2956         244 NPEYLSEVLEMLYECYAQ  261 (389)
T ss_pred             ChHHHHHHHHHHHHHHHH
Confidence            9886 4556666666554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.54  E-value=2.5e-07  Score=68.28  Aligned_cols=65  Identities=23%  Similarity=0.328  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC----CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLK----PD---YPKVKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~----P~---~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                      .+.+|.|+|.++..+|+|++|+..+++|+++.    +.   -..++.++|.++..+|++++|++++++++++
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34455555555555555555555555555431    11   1344555555555555555555555555543

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.50  E-value=7.9e-07  Score=65.52  Aligned_cols=70  Identities=24%  Similarity=0.350  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccc---cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIK---CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL  108 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~---p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l  108 (337)
                      ..+..+.+.|..++..|+|++|+.+|.+++++.   +++....+.++.|+|.|+..+|++++|+..+++|+++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            578899999999999999999999999999872   2222336899999999999999999999999999976

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.48  E-value=1.7e-06  Score=73.46  Aligned_cols=96  Identities=16%  Similarity=0.168  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q psy5660          57 YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKN----------YRSCLTDCQIALKLKPDYPKVKLRAAQCLFHL  126 (337)
Q Consensus        57 y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~----------~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~l  126 (337)
                      |+.|.+.|......+|.|    +..+.|-|.+++.|.+          +++|+.-++.||.++|+...|++.+|.++..+
T Consensus         7 FE~ark~aea~y~~nP~D----adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~   82 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLD----ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL   82 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-----HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHh----HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            688999999999999994    5788888888887743          67788889999999999999999999999887


Q ss_pred             CC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         127 KK-----------FEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       127 g~-----------~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      +.           |+.|..+|+++...+|+|...+.-+..+
T Consensus        83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            64           8889999999999999998887766555

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.46  E-value=5.9e-06  Score=65.11  Aligned_cols=79  Identities=15%  Similarity=0.225  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q psy5660          80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD---STVIDLR  153 (337)
Q Consensus        80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~---~~~~~~l  153 (337)
                      ..+++.|..++..|++.+|+..|.+++..+|++   ..+++.+|.++...|++++|+..|+.++..+|++   ..+...+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            567889999999999999999999999999887   5799999999999999999999999999999986   3455555


Q ss_pred             HHHHH
Q psy5660         154 TSCIN  158 (337)
Q Consensus       154 ~~~~~  158 (337)
                      +.+..
T Consensus        83 ~~~~~   87 (119)
T TIGR02795        83 GMSLQ   87 (119)
T ss_pred             HHHHH
Confidence            55543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG2002|consensus

Probab=98.45  E-value=1.7e-06  Score=88.78  Aligned_cols=109  Identities=14%  Similarity=0.092  Sum_probs=87.8

Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHH
Q psy5660          47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL--KPDYPKVKLRAAQCLF  124 (337)
Q Consensus        47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l--~P~~~ka~~r~a~a~~  124 (337)
                      .|-++...|++..|+..|++..+.-.+    .+.+|.|+|.|++.+|+|..|+..|+.+++.  .-++...+..+|++++
T Consensus       652 IgiVLA~kg~~~~A~dIFsqVrEa~~~----~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y  727 (1018)
T KOG2002|consen  652 IGIVLAEKGRFSEARDIFSQVREATSD----FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWY  727 (1018)
T ss_pred             hhhhhhhccCchHHHHHHHHHHHHHhh----CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence            344444556666666666665554332    4478999999999999999999999999875  3457789999999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         125 HLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       125 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ..|++.+|..+..+|+.+.|.|..+...++-+..+
T Consensus       728 ~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kk  762 (1018)
T KOG2002|consen  728 EAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKK  762 (1018)
T ss_pred             HhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHH
Confidence            99999999999999999999999888777766554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.42  E-value=2.7e-06  Score=85.08  Aligned_cols=113  Identities=8%  Similarity=0.027  Sum_probs=88.8

Q ss_pred             hccccCCCCCChHHHHHHHHHHHHHHHHh--------CcHHHHHHHHHHHHcc--ccCCchHHHHHHHHHHHHHHHccCH
Q psy5660          26 QQLKYDPLENTPEELATTYKDEGNFNFKC--------NKYRNAIINYTEGLKI--KCADNDVNAQLYNNRAASNFFLKNY   95 (337)
Q Consensus        26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~--------g~y~~Ai~~Y~~ai~~--~p~~~~~~~~~~~nra~~~~~lg~~   95 (337)
                      +++..||      ..|..+-..+..+...        .+...|.....+++.+  .+.    .+.+|.-+|..+...|++
T Consensus       367 ~Ai~ldP------~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~----~~~~~~ala~~~~~~g~~  436 (517)
T PRK10153        367 EILKSEP------DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV----LPRIYEILAVQALVKGKT  436 (517)
T ss_pred             HHHHhCC------CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC----ChHHHHHHHHHHHhcCCH
Confidence            5677787      4455555545544332        2345666667776665  444    346777788998899999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660          96 RSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV  149 (337)
Q Consensus        96 ~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~  149 (337)
                      ++|...+++|+.++| +..+|..+|+++...|++++|+..|++++.++|.++..
T Consensus       437 ~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        437 DEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence            999999999999999 58899999999999999999999999999999998753

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.41  E-value=1.5e-05  Score=75.64  Aligned_cols=106  Identities=15%  Similarity=-0.007  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchH---------------------------------HHHHHHHHHHH
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDV---------------------------------NAQLYNNRAAS   88 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~---------------------------------~~~~~~nra~~   88 (337)
                      +...-+|..++..|+++.|+..+.++++..|++...                                 ....+.++|.+
T Consensus        44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~  123 (355)
T cd05804          44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG  123 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH
Confidence            345567888999999999999999999888765421                                 12344567778


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660          89 NFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS  147 (337)
Q Consensus        89 ~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~  147 (337)
                      +...|++++|+..++++++++|++..++..+|.++...|++++|+.++++++...|.+.
T Consensus       124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~  182 (355)
T cd05804         124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS  182 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc
Confidence            88999999999999999999999999999999999999999999999999999887543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0543|consensus

Probab=98.37  E-value=2.9e-06  Score=80.10  Aligned_cols=96  Identities=18%  Similarity=0.266  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660          43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQC  122 (337)
Q Consensus        43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a  122 (337)
                      .+.+.+..+.|.++|..|+.+.+++|.++|+    +.-+++.||.|++.+|+|+.|+.++++|++++|.|-.+...+..|
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~----N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l  334 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLELDPN----NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL  334 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC----chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            4568889999999999999999999999999    678999999999999999999999999999999997777777777


Q ss_pred             HHhcCCHHHH-HHHHHHHHhh
Q psy5660         123 LFHLKKFEDC-THLCDELLKE  142 (337)
Q Consensus       123 ~~~lg~~~eA-~~~~~~al~l  142 (337)
                      .....++.+. .+.|.+.+..
T Consensus       335 ~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  335 KQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            7777666555 5666666654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.36  E-value=5.1e-06  Score=78.80  Aligned_cols=102  Identities=9%  Similarity=-0.073  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH----H
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP----K  114 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~----k  114 (337)
                      .....+...|..+...|++++|+..++++++..|++    ..++.++|.++..+|++++|+..+++++...|...    .
T Consensus       112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~  187 (355)
T cd05804         112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGH  187 (355)
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHH
Confidence            445566678899999999999999999999999984    57889999999999999999999999999987432    4


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q psy5660         115 VKLRAAQCLFHLKKFEDCTHLCDELLKENP  144 (337)
Q Consensus       115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~P  144 (337)
                      .++.+|.++...|++++|+..+++++...|
T Consensus       188 ~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         188 NWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            566899999999999999999999987766

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.33  E-value=1.4e-05  Score=83.79  Aligned_cols=115  Identities=9%  Similarity=-0.057  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-----
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP-----  113 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~-----  113 (337)
                      ....++-...+.+...+++++|++....+++..|+    ...+|+-.|..+++.+++..+...  .++..-+.+.     
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~----~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v  102 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK----SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV  102 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc----ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence            67888889999999999999999999999999998    558888889999998888877665  6666655555     


Q ss_pred             --------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         114 --------------KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       114 --------------ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                                    .|++.+|.||-.+|+.++|...|+++|+++|+|..+.+.++-....
T Consensus       103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae  162 (906)
T PRK14720        103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE  162 (906)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence                          8999999999999999999999999999999999998887765544

>KOG1129|consensus

Probab=98.28  E-value=2.1e-06  Score=78.97  Aligned_cols=102  Identities=14%  Similarity=0.137  Sum_probs=83.0

Q ss_pred             hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHhcCCHH
Q psy5660          54 CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK--PD-YPKVKLRAAQCLFHLKKFE  130 (337)
Q Consensus        54 ~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~--P~-~~ka~~r~a~a~~~lg~~~  130 (337)
                      .++.+-|+.+|++.+++.-.    ++.+++|+|.|.+--++|+-++..+.+|+..-  |. -...||++|.+....|++.
T Consensus       337 ~~~PE~AlryYRRiLqmG~~----speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~n  412 (478)
T KOG1129|consen  337 DNNPEMALRYYRRILQMGAQ----SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFN  412 (478)
T ss_pred             CCChHHHHHHHHHHHHhcCC----ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchH
Confidence            33444444444444444433    56899999999999999999999999999874  33 4589999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         131 DCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       131 eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      -|.++++-+|..||+|.++...++.+..+
T Consensus       413 lA~rcfrlaL~~d~~h~ealnNLavL~~r  441 (478)
T KOG1129|consen  413 LAKRCFRLALTSDAQHGEALNNLAVLAAR  441 (478)
T ss_pred             HHHHHHHHHhccCcchHHHHHhHHHHHhh
Confidence            99999999999999999999998877554

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.27  E-value=9.4e-05  Score=71.91  Aligned_cols=122  Identities=11%  Similarity=0.052  Sum_probs=94.2

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHH-HHHHHHccCHHHHHHHHHHHHhhCCCCHH-
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNR-AASNFFLKNYRSCLTDCQIALKLKPDYPK-  114 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nr-a~~~~~lg~~~~Al~d~~~Al~l~P~~~k-  114 (337)
                      ..+.+......|...+..|+|+.|.+...++-...+.     +.++.-. |.+..+.|+++.|...+.+|.+.+|++.- 
T Consensus        80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-----p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~  154 (398)
T PRK10747         80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-----PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLP  154 (398)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-----hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHH
Confidence            3456777788899999999999999777776554322     2333444 55558999999999999999999998854 


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy5660         115 VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEI  163 (337)
Q Consensus       115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  163 (337)
                      ...+.+..+...|+++.|+..+++.++.+|+|..+...+..+.......
T Consensus       155 ~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw  203 (398)
T PRK10747        155 VEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAW  203 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhH
Confidence            4456689999999999999999999999999998888877776554333

>TIGR00540 hemY_coli hemY protein

Probab=98.27  E-value=8.6e-05  Score=72.43  Aligned_cols=119  Identities=13%  Similarity=0.102  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-HHH
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP-KVK  116 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~-ka~  116 (337)
                      ...+.....+|-..+..|+|..|.+...++.+..|+    ....+.-.|.+..++|++..|...+.++.+..|++. .+.
T Consensus        81 ~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~----~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~  156 (409)
T TIGR00540        81 RRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAE----PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVE  156 (409)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHH
Confidence            346677778888888999999999999998888776    335566677888888999999999999988888775 455


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660         117 LRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH  160 (337)
Q Consensus       117 ~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~  160 (337)
                      ...+..++..|+++.|...+++.++..|+|+.+...+..+....
T Consensus       157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~  200 (409)
T TIGR00540       157 IARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS  200 (409)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            55688889999999999999999999999988877777766543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1840|consensus

Probab=98.27  E-value=3.4e-05  Score=76.45  Aligned_cols=104  Identities=18%  Similarity=0.168  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC----CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA----DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL------  108 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~----~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l------  108 (337)
                      .....+...|-.|+.+|+|+.|+..+.+|++.-+.    +-...+....+.|..|+.+++|.+|+..|++|+.+      
T Consensus       197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G  276 (508)
T KOG1840|consen  197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG  276 (508)
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence            45556666999999999999999999999998321    11235667778999999999999999999999986      


Q ss_pred             --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         109 --KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       109 --~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                        +|.-.-++.++|.+|...|+|++|..+|+++++|
T Consensus       277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I  312 (508)
T KOG1840|consen  277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI  312 (508)
T ss_pred             CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence              3555678899999999999999999999999988

>KOG1128|consensus

Probab=98.25  E-value=6.4e-06  Score=82.54  Aligned_cols=103  Identities=14%  Similarity=0.126  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660          43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQC  122 (337)
Q Consensus        43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a  122 (337)
                      +....|+-.+.+++|.+|.++++.+++++|-    ....|+++|.|.+++++++.|..++.+++.++|++..+|.+++.+
T Consensus       487 A~r~~~~~~~~~~~fs~~~~hle~sl~~npl----q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~a  562 (777)
T KOG1128|consen  487 AQRSLALLILSNKDFSEADKHLERSLEINPL----QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA  562 (777)
T ss_pred             HHHhhccccccchhHHHHHHHHHHHhhcCcc----chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence            3344455556678999999999999999987    668899999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660         123 LFHLKKFEDCTHLCDELLKENPTDSTV  149 (337)
Q Consensus       123 ~~~lg~~~eA~~~~~~al~l~P~~~~~  149 (337)
                      |+.+|+-.+|...++++++.+-+|..+
T Consensus       563 yi~~~~k~ra~~~l~EAlKcn~~~w~i  589 (777)
T KOG1128|consen  563 YIRLKKKKRAFRKLKEALKCNYQHWQI  589 (777)
T ss_pred             HHHHhhhHHHHHHHHHHhhcCCCCCee
Confidence            999999999999999999987655444

>PRK11906 transcriptional regulator; Provisional

Probab=98.25  E-value=2.7e-05  Score=75.29  Aligned_cols=113  Identities=9%  Similarity=-0.076  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHhC---cHHHHHHHHHHHH---ccccCCchHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHh
Q psy5660          43 TYKDEGNFNFKCN---KYRNAIINYTEGL---KIKCADNDVNAQLYNNRAASNFFL---------KNYRSCLTDCQIALK  107 (337)
Q Consensus        43 ~~k~~Gn~~~k~g---~y~~Ai~~Y~~ai---~~~p~~~~~~~~~~~nra~~~~~l---------g~~~~Al~d~~~Al~  107 (337)
                      .+.-+|...+.++   ..+.|+.++++|+   +++|.    .+.+|.-+|.||+.+         .+-.+|+..+++|++
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~----~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve  332 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL----KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD  332 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc----cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence            4455666665554   3578999999999   88887    789999999999865         246678899999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         108 LKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       108 l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ++|.++.|+..+|.++...++++.|+.++++++.++|+...+....+.+.-.
T Consensus       333 ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~  384 (458)
T PRK11906        333 ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH  384 (458)
T ss_pred             cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888776554

>KOG1173|consensus

Probab=98.25  E-value=2.5e-05  Score=76.46  Aligned_cols=142  Identities=14%  Similarity=0.092  Sum_probs=107.4

Q ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-------CCCHHHHH
Q psy5660          45 KDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK-------PDYPKVKL  117 (337)
Q Consensus        45 k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~-------P~~~ka~~  117 (337)
                      .-.|..+.+.++++-|-.+|.+|+.+.|.||    .++.-+|.+.+..+.|.+|+..++.++..-       +.+...+.
T Consensus       384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dp----lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~  459 (611)
T KOG1173|consen  384 LYLGMEYMRTNNLKLAEKFFKQALAIAPSDP----LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN  459 (611)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcCCCcc----hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence            3678888889999999999999999999976    777779999999999999999999998432       12445578


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5660         118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH---KEILRNERKQAQQVKKEEKEKERVLQIIRE  190 (337)
Q Consensus       118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~---~~~~~~~~k~~~~~~~~~~~~~~l~~al~~  190 (337)
                      ++|.++..++++++|+.+++++|.+.|.+.......+-+....   ..+...+-|.....+...-..+-|..++..
T Consensus       460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  460 NLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998888777776552   223333334433333333444444555544

>KOG1840|consensus

Probab=98.24  E-value=4.1e-05  Score=75.88  Aligned_cols=104  Identities=22%  Similarity=0.250  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc----CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC----ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK-----  109 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p----~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~-----  109 (337)
                      ..+...+..|+.+...++|.+|+..|.+|+.+--    .+.+-.+..+.|+|.+|.+.|+|++|...|++|+++-     
T Consensus       239 ~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~  318 (508)
T KOG1840|consen  239 VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG  318 (508)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc
Confidence            5566777899999999999999999999998632    2233378999999999999999999999999999873     


Q ss_pred             ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         110 ---PDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       110 ---P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                         |.-...+...|..+..++++++|+..+++++++
T Consensus       319 ~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  319 ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI  354 (508)
T ss_pred             cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence               222356667899999999999999999999987

>KOG1127|consensus

Probab=98.21  E-value=2.4e-05  Score=80.76  Aligned_cols=125  Identities=13%  Similarity=0.147  Sum_probs=108.5

Q ss_pred             hhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc------------------------
Q psy5660          20 PLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN------------------------   75 (337)
Q Consensus        20 ~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~------------------------   75 (337)
                      ..-..+++++.|+      ..|-.|-..|..|...-+...|..||.+|.++++++.                        
T Consensus       477 al~ali~alrld~------~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  477 ALHALIRALRLDV------SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             HHHHHHHHHhccc------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            3445678899988      8999999999999877788999999999999988642                        


Q ss_pred             --------hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660          76 --------DVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS  147 (337)
Q Consensus        76 --------~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~  147 (337)
                              ......|..||..|++-+|...|+.+++.|++.+|++..+|..+|.+|...|+|.-|++.+.++..++|.+.
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~  630 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK  630 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence                    122334556888899999999999999999999999999999999999999999999999999999999986


Q ss_pred             HHH
Q psy5660         148 TVI  150 (337)
Q Consensus       148 ~~~  150 (337)
                      -.+
T Consensus       631 y~~  633 (1238)
T KOG1127|consen  631 YGR  633 (1238)
T ss_pred             HHH
Confidence            443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.19  E-value=0.00018  Score=59.65  Aligned_cols=119  Identities=14%  Similarity=0.113  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKV  115 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka  115 (337)
                      +.+..........+..+++..+...+.+.+...|+.+ ....+...+|.+++..|++++|+..++.++...|+.   ..+
T Consensus         9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~-ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a   87 (145)
T PF09976_consen    9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP-YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLA   87 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence            4566667777777889999999999999999888743 346677789999999999999999999999987654   368


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      .+|+|.+++..|++++|+..++.. .-.+-...+..+++.+...
T Consensus        88 ~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~  130 (145)
T PF09976_consen   88 RLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLA  130 (145)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHH
Confidence            899999999999999999999662 2223335556667766654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.19  E-value=7.2e-05  Score=74.94  Aligned_cols=116  Identities=11%  Similarity=-0.027  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHh
Q psy5660          39 ELATTYKDEGNFNFKCNK---YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK--------NYRSCLTDCQIALK  107 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~---y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg--------~~~~Al~d~~~Al~  107 (337)
                      -.|-.+.-+|..++..+.   +..|+.++++|++++|+    ++.+|.-+|.|+....        +...+.....+++.
T Consensus       337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~----~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD----FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            356777888988887655   88999999999999999    6788888888876542        34556666677666


Q ss_pred             h--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         108 L--KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       108 l--~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +  +|..+.+|..+|..+...|++++|...+++++.++| +..+..+++++...
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~  465 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL  465 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence            4  788889999999999999999999999999999999 46788888877665

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.18  E-value=6.1e-05  Score=75.22  Aligned_cols=75  Identities=16%  Similarity=0.162  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660          81 LYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTS  155 (337)
Q Consensus        81 ~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~  155 (337)
                      +++.+|..|-.+|++.+|+..+++||...|+.+..|+..|+++-..|++.+|..+.+.|..+|+.+.-+..--.+
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aK  270 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAK  270 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHH
Confidence            446678888889999999999999999999999999999999999999999999999999998887665544333

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3060|consensus

Probab=98.18  E-value=0.00022  Score=63.77  Aligned_cols=109  Identities=15%  Similarity=0.054  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660          44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCL  123 (337)
Q Consensus        44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~  123 (337)
                      .+-.|..+-..|+|++|+++|+..++-+|.|    ...|-..-++...+|.--+||.....-++.-+.+..||..++..|
T Consensus        89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~----~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY  164 (289)
T KOG3060|consen   89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTD----TVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIY  164 (289)
T ss_pred             HHHHHHHHHHhhchhhHHHHHHHHhccCcch----hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3455777777899999999999999999884    344444444444566666677666666666666677777777777


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         124 FHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       124 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      ...|+|+.|.-+++.++-+.|-|+.....++.+
T Consensus       165 ~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~  197 (289)
T KOG3060|consen  165 LSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEV  197 (289)
T ss_pred             HhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            777777777777777777777666554444443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.17  E-value=3.3e-06  Score=51.86  Aligned_cols=32  Identities=38%  Similarity=0.543  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q psy5660          80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPD  111 (337)
Q Consensus        80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~  111 (337)
                      .+|+++|.+++.+|++++|+.+|++||+++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45666777777777777777777777777665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.16  E-value=2.5e-05  Score=72.31  Aligned_cols=113  Identities=14%  Similarity=0.135  Sum_probs=91.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHcccc--CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q psy5660          34 ENTPEELATTYKDEGNFNFKC-NKYRNAIINYTEGLKIKC--ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP  110 (337)
Q Consensus        34 ~~~~~e~A~~~k~~Gn~~~k~-g~y~~Ai~~Y~~ai~~~p--~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P  110 (337)
                      .+.+...|..+.+.|..+... |++++|+++|.+|++.-.  +.+.....++.+.|.++.++|+|.+|+..++++....-
T Consensus       107 ~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l  186 (282)
T PF14938_consen  107 AGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL  186 (282)
T ss_dssp             CT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred             cCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence            478889999999999999999 999999999999999743  23344678889999999999999999999999887532


Q ss_pred             C------CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660         111 D------YPK-VKLRAAQCLFHLKKFEDCTHLCDELLKENPTD  146 (337)
Q Consensus       111 ~------~~k-a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~  146 (337)
                      .      +++ .+++.+.|++..|++-.|...+++...++|..
T Consensus       187 ~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  187 ENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             CHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             cccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            1      233 45688999999999999999999999999865

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.14  E-value=0.00012  Score=67.54  Aligned_cols=115  Identities=13%  Similarity=0.119  Sum_probs=100.3

Q ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-
Q psy5660          35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP-  113 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~-  113 (337)
                      ....++|.-|=+.+..+....+.+.|+....+|++.+|+    ...+-.-+|.+.+..|+|..|+..++++++-||.+. 
T Consensus       174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~----cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~  249 (389)
T COG2956         174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK----CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS  249 (389)
T ss_pred             cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc----ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH
Confidence            455688999999999999999999999999999999998    445556689999999999999999999999999986 


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660         114 KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLR  153 (337)
Q Consensus       114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l  153 (337)
                      .+.-.+..||..+|+.++.+.++.++.+..++......+.
T Consensus       250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~  289 (389)
T COG2956         250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLA  289 (389)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHH
Confidence            6677889999999999999999999999887765444433

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.13  E-value=2.2e-05  Score=75.70  Aligned_cols=89  Identities=24%  Similarity=0.231  Sum_probs=65.1

Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q psy5660          47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHL  126 (337)
Q Consensus        47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~l  126 (337)
                      .+..++..++..+|++...++|...|.+    +.++.--|..++..++|+.|+..+++|+.+.|...++|+.+|.||..+
T Consensus       206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d----~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~  281 (395)
T PF09295_consen  206 LARVYLLMNEEVEAIRLLNEALKENPQD----SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQL  281 (395)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence            4566666677777777777777777763    466666777777777777777777777777777777777777777777


Q ss_pred             CCHHHHHHHHHHH
Q psy5660         127 KKFEDCTHLCDEL  139 (337)
Q Consensus       127 g~~~eA~~~~~~a  139 (337)
                      |++++|+..++.+
T Consensus       282 ~d~e~ALlaLNs~  294 (395)
T PF09295_consen  282 GDFENALLALNSC  294 (395)
T ss_pred             CCHHHHHHHHhcC
Confidence            7777777666533

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK11906 transcriptional regulator; Provisional

Probab=98.13  E-value=6.1e-05  Score=72.88  Aligned_cols=93  Identities=14%  Similarity=0.060  Sum_probs=84.8

Q ss_pred             cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy5660          56 KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHL  135 (337)
Q Consensus        56 ~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~  135 (337)
                      .-..|++.-.+|++++|.|    +.++..+|.+....++++.|+..+++|+.++|+...+++..|..+...|+.++|.+.
T Consensus       319 ~~~~a~~~A~rAveld~~D----a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~  394 (458)
T PRK11906        319 AAQKALELLDYVSDITTVD----GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARIC  394 (458)
T ss_pred             HHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4578899999999999994    588888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHH
Q psy5660         136 CDELLKENPTDSTVIDL  152 (337)
Q Consensus       136 ~~~al~l~P~~~~~~~~  152 (337)
                      .+++++++|.-..+.-+
T Consensus       395 i~~alrLsP~~~~~~~~  411 (458)
T PRK11906        395 IDKSLQLEPRRRKAVVI  411 (458)
T ss_pred             HHHHhccCchhhHHHHH
Confidence            99999999986555433

>KOG3060|consensus

Probab=98.12  E-value=0.00043  Score=61.87  Aligned_cols=126  Identities=18%  Similarity=0.114  Sum_probs=100.1

Q ss_pred             ChhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHH
Q psy5660          19 SPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC   98 (337)
Q Consensus        19 ~~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~A   98 (337)
                      ..++++..+|..|  +  | ...-.+|.+--..-.+|+-..||+....-++.=+.|.    .+|.-+|..|+..|+|.+|
T Consensus       103 ~~A~e~y~~lL~d--d--p-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~----EAW~eLaeiY~~~~~f~kA  173 (289)
T KOG3060|consen  103 KEAIEYYESLLED--D--P-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQ----EAWHELAEIYLSEGDFEKA  173 (289)
T ss_pred             hhHHHHHHHHhcc--C--c-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcH----HHHHHHHHHHHhHhHHHHH
Confidence            3567777776553  1  1 2233344444445566888899999999999988854    8999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          99 LTDCQIALKLKPDYPKVKLRAAQCLFHLK---KFEDCTHLCDELLKENPTDSTVIDLR  153 (337)
Q Consensus        99 l~d~~~Al~l~P~~~ka~~r~a~a~~~lg---~~~eA~~~~~~al~l~P~~~~~~~~l  153 (337)
                      .-++++.+-++|.++-.+.|+|..++-+|   ++.-|.++|.++++++|.+-..+..+
T Consensus       174 ~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI  231 (289)
T KOG3060|consen  174 AFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI  231 (289)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence            99999999999999999999999998876   77889999999999999665444333

>KOG1156|consensus

Probab=98.11  E-value=9.9e-05  Score=73.35  Aligned_cols=112  Identities=8%  Similarity=-0.023  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660          43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQC  122 (337)
Q Consensus        43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a  122 (337)
                      .+..+.-.+|..|+|+..+....+.+...|.    ...-..-.|.....+|+-++|...++.++..|+...-+|...|..
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~e----HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~   84 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPE----HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL   84 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCc----cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH
Confidence            4456677788889999999999999998887    445566678888889999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         123 LFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       123 ~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      +..-++|++|++||+.||.++|+|.++..-++-++.
T Consensus        85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~  120 (700)
T KOG1156|consen   85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQI  120 (700)
T ss_pred             HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            999999999999999999999999887665554443

>KOG4648|consensus

Probab=98.10  E-value=9.6e-06  Score=75.09  Aligned_cols=94  Identities=14%  Similarity=0.196  Sum_probs=74.7

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---
Q psy5660          83 NNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK---  159 (337)
Q Consensus        83 ~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~---  159 (337)
                      --+|.-|+++|.|++||++|.+++.++|.|+-.+.++|.+|+.+++|..|...|..++.+|-....+...+..+...   
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            45788999999999999999999999999999999999999999999999999999999986655555544444332   


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy5660         160 HKEILRNERKQAQQVKK  176 (337)
Q Consensus       160 ~~~~~~~~~k~~~~~~~  176 (337)
                      ..++..++...++++..
T Consensus       181 ~~EAKkD~E~vL~LEP~  197 (536)
T KOG4648|consen  181 NMEAKKDCETVLALEPK  197 (536)
T ss_pred             HHHHHHhHHHHHhhCcc
Confidence            34445555555554443

>KOG1128|consensus

Probab=98.10  E-value=4.9e-05  Score=76.35  Aligned_cols=81  Identities=12%  Similarity=0.105  Sum_probs=72.3

Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5660          90 FFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERK  169 (337)
Q Consensus        90 ~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~~k  169 (337)
                      +..++|.+|..+++.+++++|-....||++|.|..+++++..|.++|.+++.++|+|.++.+.+..+.-+..+..+++++
T Consensus       496 ~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~  575 (777)
T KOG1128|consen  496 LSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK  575 (777)
T ss_pred             ccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence            34589999999999999999999999999999999999999999999999999999999999999887775555555544


Q ss_pred             H
Q psy5660         170 Q  170 (337)
Q Consensus       170 ~  170 (337)
                      -
T Consensus       576 l  576 (777)
T KOG1128|consen  576 L  576 (777)
T ss_pred             H
Confidence            3

>KOG2003|consensus

Probab=98.09  E-value=0.00026  Score=67.90  Aligned_cols=120  Identities=14%  Similarity=0.110  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHH---H---------------------------HHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQ---L---------------------------YNNRAAS   88 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~---~---------------------------~~nra~~   88 (337)
                      ..++.+.+.+|.|--..+..+|++.|.++..+-|+|+.+.+.   +                           --++|.-
T Consensus       556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ay  635 (840)
T KOG2003|consen  556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAY  635 (840)
T ss_pred             hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHH
Confidence            467788888999988899999999999999999987632211   1                           1134455


Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660          89 NFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus        89 ~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      |+...=+++||.++++|--+.|+..|..+..|.|+...|+|..|...|+...+-.|.+-..+..+.++..
T Consensus       636 yidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~  705 (840)
T KOG2003|consen  636 YIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAG  705 (840)
T ss_pred             HHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhc
Confidence            5555567899999999999999999999999999999999999999999999999999888877776654

>KOG4151|consensus

Probab=98.09  E-value=1.3e-05  Score=81.10  Aligned_cols=122  Identities=24%  Similarity=0.326  Sum_probs=109.5

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHhhCCCCHH
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF--LKNYRSCLTDCQIALKLKPDYPK  114 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~--lg~~~~Al~d~~~Al~l~P~~~k  114 (337)
                      ....+...++.||..|..++|..|.-.|..++.+.|.+....+.+.+|++.|++.  +|+|..++.+|.-|+...|...+
T Consensus        49 ~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~  128 (748)
T KOG4151|consen   49 FLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISK  128 (748)
T ss_pred             HHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHH
Confidence            4467888999999999999999999999999999998777789999999999986  57999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         115 VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      ++++++.+|..+++++-|++...-....+|.+..+.....+.+.
T Consensus       129 ~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~  172 (748)
T KOG4151|consen  129 ALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKG  172 (748)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence            99999999999999999999988888999999766665544443

>KOG1174|consensus

Probab=98.08  E-value=0.00019  Score=68.08  Aligned_cols=146  Identities=13%  Similarity=0.106  Sum_probs=100.6

Q ss_pred             HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHH---
Q psy5660          24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT---  100 (337)
Q Consensus        24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~---  100 (337)
                      +-++|..||      .....+.-+|+.+...|+..+|+-.|+.|+.+.|.    .-.+|-.+-.||+..|.+++|..   
T Consensus       323 ~eK~I~~~~------r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~----rL~~Y~GL~hsYLA~~~~kEA~~~An  392 (564)
T KOG1174|consen  323 VEKCIDSEP------RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY----RLEIYRGLFHSYLAQKRFKEANALAN  392 (564)
T ss_pred             HHHHhccCc------ccchHHHhccHHHHhccchHHHHHHHHHHHhcchh----hHHHHHHHHHHHHhhchHHHHHHHHH
Confidence            345666665      66788899999999999999999999999999987    44566666667776666665544   


Q ss_pred             ---------------------------------HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660         101 ---------------------------------DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS  147 (337)
Q Consensus       101 ---------------------------------d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~  147 (337)
                                                       .++++|+++|.+.+|-..+|..+..-|++.+++..+++.|...|+. 
T Consensus       393 ~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-  471 (564)
T KOG1174|consen  393 WTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-  471 (564)
T ss_pred             HHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-
Confidence                                             4455556677778888888888888888888888888888877654 


Q ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy5660         148 TVIDLRTSCINK---HKEILRNERKQAQQVKKEEKE  180 (337)
Q Consensus       148 ~~~~~l~~~~~~---~~~~~~~~~k~~~~~~~~~~~  180 (337)
                      .+...++.+...   .++.-..+.++.+..++.+..
T Consensus       472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s  507 (564)
T KOG1174|consen  472 NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT  507 (564)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence            344555554433   222333444554444444333

>TIGR00540 hemY_coli hemY protein

Probab=98.08  E-value=0.00016  Score=70.51  Aligned_cols=117  Identities=13%  Similarity=0.071  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH--HHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP--KVKL  117 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~--ka~~  117 (337)
                      ....+...|..+...|++++|+..+.++++..|++....  ...-+....+..++...++..++++++..|+++  ..+.
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~--~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~  339 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS--LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR  339 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch--hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence            566777889999999999999999999999999864211  112234444556889999999999999999999  7788


Q ss_pred             HHHHHHHhcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHH
Q psy5660         118 RAAQCLFHLKKFEDCTHLCD--ELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       118 r~a~a~~~lg~~~eA~~~~~--~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      .+|.+++..|++++|.++++  .+++.+|++.... .++.+...
T Consensus       340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~  382 (409)
T TIGR00540       340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQ  382 (409)
T ss_pred             HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHH
Confidence            99999999999999999999  5888888876644 66666544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.06  E-value=0.00024  Score=69.01  Aligned_cols=121  Identities=11%  Similarity=0.085  Sum_probs=95.7

Q ss_pred             HHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy5660          23 EGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDC  102 (337)
Q Consensus        23 ealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~  102 (337)
                      .|.+.+..+|  ...+.-...+...+....+.|+++.|..+|.++.+..|+..   .......+..++..|+++.|+..+
T Consensus       102 ~A~k~l~~~~--~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~---~~~~l~~a~l~l~~g~~~~Al~~l  176 (398)
T PRK10747        102 QVEKLMTRNA--DHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ---LPVEITRVRIQLARNENHAARHGV  176 (398)
T ss_pred             HHHHHHHHHH--hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch---HHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4455555543  11112344455667777999999999999999999888732   122233588899999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q psy5660         103 QIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDST  148 (337)
Q Consensus       103 ~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~  148 (337)
                      +++++.+|+++.++..++.++...|++++|+..+.+..+..+.++.
T Consensus       177 ~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~  222 (398)
T PRK10747        177 DKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE  222 (398)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH
Confidence            9999999999999999999999999999999999999988776544

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.03  E-value=6.4e-06  Score=50.84  Aligned_cols=32  Identities=16%  Similarity=0.293  Sum_probs=28.7

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q psy5660         102 CQIALKLKPDYPKVKLRAAQCLFHLKKFEDCT  133 (337)
Q Consensus       102 ~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~  133 (337)
                      |++||+++|+|+.+|+++|.++...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            68889999999999999999999999999886

>KOG4162|consensus

Probab=98.01  E-value=0.0001  Score=74.50  Aligned_cols=112  Identities=17%  Similarity=0.104  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660          44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCL  123 (337)
Q Consensus        44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~  123 (337)
                      +...|..+.+.++-++|..|..+|-...|.    .+..|+-+|.++...|++.+|...+..|+.+||+++...-.+|.++
T Consensus       653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l----~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~l  728 (799)
T KOG4162|consen  653 WLLAADLFLLSGNDDEARSCLLEASKIDPL----SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELL  728 (799)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhcchh----hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            335556666677788899999999999887    7789999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         124 FHLKKFEDCTH--LCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       124 ~~lg~~~eA~~--~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ...|+-.-|..  ....++++||.|.+++..++.+.++
T Consensus       729 le~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~  766 (799)
T KOG4162|consen  729 LELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK  766 (799)
T ss_pred             HHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            99998888888  9999999999999999999998765

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.00  E-value=0.00038  Score=57.58  Aligned_cols=102  Identities=15%  Similarity=0.087  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc------------------hHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN------------------DVNAQLYNNRAASNFFLKNYRSCLTDC  102 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~------------------~~~~~~~~nra~~~~~lg~~~~Al~d~  102 (337)
                      -+.+...|......++...++..+.+++.+-..+.                  .....+...++.++...|++..|+..|
T Consensus         6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~   85 (146)
T PF03704_consen    6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL   85 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            34555667777888899999999999998743210                  233455556777888899999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         103 QIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       103 ~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                      ++++.++|-+-.+|..+-.++...|+..+|++.|+++.+.
T Consensus        86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.99  E-value=1.2e-05  Score=49.31  Aligned_cols=34  Identities=15%  Similarity=0.363  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660         113 PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD  146 (337)
Q Consensus       113 ~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~  146 (337)
                      +++|+++|.++..+|++++|+.+|+++++++|+|
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4789999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4234|consensus

Probab=97.98  E-value=6.6e-05  Score=64.87  Aligned_cols=84  Identities=19%  Similarity=0.306  Sum_probs=72.5

Q ss_pred             hccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660          26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA  105 (337)
Q Consensus        26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A  105 (337)
                      .||..=| ....+.++-.|.++|-..++.++++.||...++||++.|.    +..+...||.+|-++..|+.|+.||.+.
T Consensus       120 ~Ale~cp-~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt----y~kAl~RRAeayek~ek~eealeDyKki  194 (271)
T KOG4234|consen  120 EALESCP-STSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT----YEKALERRAEAYEKMEKYEEALEDYKKI  194 (271)
T ss_pred             HHHHhCc-cccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch----hHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            3444444 2334678889999999999999999999999999999998    6678888999999999999999999999


Q ss_pred             HhhCCCCHH
Q psy5660         106 LKLKPDYPK  114 (337)
Q Consensus       106 l~l~P~~~k  114 (337)
                      ++++|.+-.
T Consensus       195 ~E~dPs~~e  203 (271)
T KOG4234|consen  195 LESDPSRRE  203 (271)
T ss_pred             HHhCcchHH
Confidence            999997553

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.97  E-value=0.00022  Score=56.49  Aligned_cols=104  Identities=16%  Similarity=0.178  Sum_probs=82.1

Q ss_pred             HHHHHHH--HHHHHHHHhCcHHHHHHHHHHHHccccCCc--------hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q psy5660          39 ELATTYK--DEGNFNFKCNKYRNAIINYTEGLKIKCADN--------DVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL  108 (337)
Q Consensus        39 e~A~~~k--~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~--------~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l  108 (337)
                      +.+.+|.  ..|...+..|-|++|...|.+|++..-+-|        -..+.++..++.++..||+|++|+....+||..
T Consensus         5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y   84 (144)
T PF12968_consen    5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY   84 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            4566665  456667888999999999999999865433        246789999999999999999999999999874


Q ss_pred             -------CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         109 -------KPD----YPKVKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       109 -------~P~----~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                             +.+    ++.+.+++|.++..+|+.++|+..|+.+-+.
T Consensus        85 FNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   85 FNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                   333    4577789999999999999999999988654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.94  E-value=2e-05  Score=58.93  Aligned_cols=67  Identities=27%  Similarity=0.475  Sum_probs=58.2

Q ss_pred             ccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660          92 LKNYRSCLTDCQIALKLKPD--YPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus        92 lg~~~~Al~d~~~Al~l~P~--~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      .|+|+.|+..++++++.+|.  +...++.+|.|++.+|+|++|+.++++ ++.+|.+.....+++++.-.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~   70 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK   70 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence            58999999999999999996  466788899999999999999999999 88888887887777777654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.91  E-value=0.0012  Score=58.17  Aligned_cols=117  Identities=12%  Similarity=0.089  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHh
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK-----------NYRSCLTDCQIALK  107 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg-----------~~~~Al~d~~~Al~  107 (337)
                      -...+....|..+++.|+|..|+..|.+-+...|+.+. ...+++.+|.|++.+.           ...+|+..++..+.
T Consensus        40 ~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~  118 (203)
T PF13525_consen   40 YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK  118 (203)
T ss_dssp             THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence            45567788999999999999999999999999998765 4567788999987653           35689999999999


Q ss_pred             hCCCCHH-----------------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         108 LKPDYPK-----------------VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       108 l~P~~~k-----------------a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      .-|+...                 --+..|+-|...|.|..|+..++.+++.-|+.......+..+
T Consensus       119 ~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l  184 (203)
T PF13525_consen  119 RYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARL  184 (203)
T ss_dssp             H-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence            9998632                 125668889999999999999999999999987665544433

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=0.00038  Score=63.72  Aligned_cols=99  Identities=18%  Similarity=0.190  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC---CHHHHH
Q psy5660          57 YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLK---KFEDCT  133 (337)
Q Consensus        57 y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg---~~~eA~  133 (337)
                      .+..+.-.+.-+..+|+|    +.-|.-+|.+|+.+|++..|...|.+|+++.|+|+..+.-.|.+++...   .-.++.
T Consensus       138 ~~~l~a~Le~~L~~nP~d----~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~  213 (287)
T COG4235         138 MEALIARLETHLQQNPGD----AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR  213 (287)
T ss_pred             HHHHHHHHHHHHHhCCCC----chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence            566677778888889994    5788889999999999999999999999999999999999999987653   568899


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         134 HLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       134 ~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ..+++++++||+|..+..+++.....
T Consensus       214 ~ll~~al~~D~~~iral~lLA~~afe  239 (287)
T COG4235         214 ALLRQALALDPANIRALSLLAFAAFE  239 (287)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            99999999999999999988876543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.88  E-value=3.4e-05  Score=47.01  Aligned_cols=31  Identities=16%  Similarity=0.363  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660         115 VKLRAAQCLFHLKKFEDCTHLCDELLKENPT  145 (337)
Q Consensus       115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~  145 (337)
                      +++.+|.++..+|++++|+.+|+++++++|+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            4444444444444555555555444444444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1129|consensus

Probab=97.88  E-value=8.1e-05  Score=68.71  Aligned_cols=77  Identities=14%  Similarity=0.078  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660          80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus        80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      ++....|.+|..++++++|+..|+.+++++|.|+.+.--.|.-|+--++.+-|+.+|++.|++.-.++++...++-|
T Consensus       291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLC  367 (478)
T KOG1129|consen  291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLC  367 (478)
T ss_pred             hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHH
Confidence            44444555555555555555555555555555555555555555555555555555555555554555554444444

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.88  E-value=3.2e-05  Score=50.53  Aligned_cols=41  Identities=24%  Similarity=0.088  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660          81 LYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ  121 (337)
Q Consensus        81 ~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~  121 (337)
                      ++..+|.++..+|++++|+..++++++.+|+|..+++.+|.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            45566666666666666666666666666666666666654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.88  E-value=3.4e-05  Score=47.00  Aligned_cols=33  Identities=21%  Similarity=0.374  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q psy5660          80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY  112 (337)
Q Consensus        80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~  112 (337)
                      .+|.++|.+++.+|+|++|+..+++|++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            567888888888888888888888888888875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.88  E-value=0.00072  Score=54.38  Aligned_cols=78  Identities=15%  Similarity=0.142  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q psy5660          80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT---DSTVIDLR  153 (337)
Q Consensus        80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~---~~~~~~~l  153 (337)
                      .+.+++|.++-.+|+.++|+..|++|+......   ..+++.+|.++..+|++++|+..++.++.-.|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            467889999999999999999999999986543   579999999999999999999999999999888   66666665


Q ss_pred             HHHH
Q psy5660         154 TSCI  157 (337)
Q Consensus       154 ~~~~  157 (337)
                      ..+.
T Consensus        82 Al~L   85 (120)
T PF12688_consen   82 ALAL   85 (120)
T ss_pred             HHHH
Confidence            5543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.87  E-value=0.0001  Score=68.51  Aligned_cols=128  Identities=16%  Similarity=0.151  Sum_probs=81.3

Q ss_pred             ChhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH--cc--C
Q psy5660          19 SPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF--LK--N   94 (337)
Q Consensus        19 ~~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~--lg--~   94 (337)
                      +..-+||+.+.-.   ++.    +...-.-..+++.++++.|.+.+...-+.+.+      ....++|.++..  .|  +
T Consensus       116 ~~~~~AL~~l~~~---~~l----E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD------~~l~qLa~awv~l~~g~e~  182 (290)
T PF04733_consen  116 GDYEEALKLLHKG---GSL----ELLALAVQILLKMNRPDLAEKELKNMQQIDED------SILTQLAEAWVNLATGGEK  182 (290)
T ss_dssp             CHHHHHHCCCTTT---TCH----HHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC------HHHHHHHHHHHHHHHTTTC
T ss_pred             CCHHHHHHHHHcc---Ccc----cHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc------HHHHHHHHHHHHHHhCchh
Confidence            3444666666532   222    23333455777788888888888887776654      444455554433  34  5


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660          95 YRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus        95 ~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +.+|...++......+.++..+..+|.|++.+|+|++|...++.++..+|+++.+...+..+...
T Consensus       183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~  247 (290)
T PF04733_consen  183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH  247 (290)
T ss_dssp             CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            78888888886666667777777788888888888888888888888888877776666555444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.85  E-value=0.00015  Score=67.05  Aligned_cols=107  Identities=21%  Similarity=0.222  Sum_probs=67.9

Q ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccc--cCCchHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhhCC-
Q psy5660          35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIK--CADNDVNAQLYNNRAASNFFL-KNYRSCLTDCQIALKLKP-  110 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~--p~~~~~~~~~~~nra~~~~~l-g~~~~Al~d~~~Al~l~P-  110 (337)
                      +.+...+..+.+-|+.+ +..++.+|+.+|++|+.+-  .+....-+.++.++|.++... |+++.|+..|++|+.+-. 
T Consensus        69 ~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~  147 (282)
T PF14938_consen   69 GDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ  147 (282)
T ss_dssp             T-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            34455566666555554 4447777888888777763  333344566777777777776 788888888888777621 


Q ss_pred             -CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         111 -DY----PKVKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       111 -~~----~ka~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                       +.    ..++...|.++..+|+|++|+..|++....
T Consensus       148 e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  148 EGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK  184 (282)
T ss_dssp             TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             CCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence             11    355567777788888888888888777764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.84  E-value=0.00057  Score=62.60  Aligned_cols=71  Identities=18%  Similarity=0.142  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHH-HHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660          79 AQLYNNRAASN-FFLKNYRSCLTDCQIALKLKPDY---PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV  149 (337)
Q Consensus        79 ~~~~~nra~~~-~~lg~~~~Al~d~~~Al~l~P~~---~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~  149 (337)
                      ...+++.|..+ ++.|+|++|+..++..++..|++   ..++|.+|.+++..|++++|+..|+++++..|+++..
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~  216 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA  216 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence            46778888887 56799999999999999999998   4899999999999999999999999999999987543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.83  E-value=9e-05  Score=77.76  Aligned_cols=101  Identities=9%  Similarity=0.001  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc---------------hHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN---------------DVNAQLYNNRAASNFFLKNYRSCLTDCQ  103 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~---------------~~~~~~~~nra~~~~~lg~~~~Al~d~~  103 (337)
                      +....+.-.|-.++..+++.+|...  .++..-+.+.               ..+..++..+|.||-++|++++|...++
T Consensus        63 ~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~ye  140 (906)
T PRK14720         63 KSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWE  140 (906)
T ss_pred             cceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHH
Confidence            4556677788888888888777766  6666554432               0123678889999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       104 ~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                      ++|+++|+|+.++-++|..+... ++++|+.++.+++..
T Consensus       141 r~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        141 RLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR  178 (906)
T ss_pred             HHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            99999999999999999999999 999999999999865

>KOG0495|consensus

Probab=97.81  E-value=0.00025  Score=70.79  Aligned_cols=104  Identities=19%  Similarity=0.150  Sum_probs=85.5

Q ss_pred             HHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHH
Q psy5660          52 FKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED  131 (337)
Q Consensus        52 ~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~e  131 (337)
                      +....|+.|...+.+|-...|+     ..+|..-+....-+++.++|+..|+.+|+.-|...|.|+.+|+++..+++.+.
T Consensus       629 ~en~e~eraR~llakar~~sgT-----eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~  703 (913)
T KOG0495|consen  629 FENDELERARDLLAKARSISGT-----ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEM  703 (913)
T ss_pred             hccccHHHHHHHHHHHhccCCc-----chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHH
Confidence            3444555555555555554443     35666666666678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660         132 CTHLCDELLKENPTDSTVIDLRTSCINKH  160 (337)
Q Consensus       132 A~~~~~~al~l~P~~~~~~~~l~~~~~~~  160 (337)
                      |...|..+++.-|....+.-++.++.++.
T Consensus       704 aR~aY~~G~k~cP~~ipLWllLakleEk~  732 (913)
T KOG0495|consen  704 AREAYLQGTKKCPNSIPLWLLLAKLEEKD  732 (913)
T ss_pred             HHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence            99999999999999999999999887763

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.80  E-value=0.0014  Score=59.42  Aligned_cols=115  Identities=12%  Similarity=0.113  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccC------------------HHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKN------------------YRSCLT  100 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~------------------~~~Al~  100 (337)
                      ....+....|..+++.++|..|+..|++.++..|+++. ...+++.+|.|+..++.                  -..|+.
T Consensus        67 ~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~  145 (243)
T PRK10866         67 YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR  145 (243)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH
Confidence            44556789999999999999999999999999998876 46778889999866641                  357889


Q ss_pred             HHHHHHhhCCCCH---HH--------------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660         101 DCQIALKLKPDYP---KV--------------KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT  154 (337)
Q Consensus       101 d~~~Al~l~P~~~---ka--------------~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  154 (337)
                      .+++.++.-|+..   .|              -+..|+-|...|.|..|+.-++.+++--|+.+.....+.
T Consensus       146 ~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~  216 (243)
T PRK10866        146 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALP  216 (243)
T ss_pred             HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHH
Confidence            9999999999763   11              145577788999999999999999999888765544433

>KOG1156|consensus

Probab=97.79  E-value=0.00039  Score=69.23  Aligned_cols=103  Identities=15%  Similarity=0.107  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA  120 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a  120 (337)
                      .+.+--.|-.+...|+-++|..+-..|+..++.    ...||.-.|..+..-++|++||.+|+.|+.++|+|...++-++
T Consensus        41 geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~----S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDls  116 (700)
T KOG1156|consen   41 GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK----SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLS  116 (700)
T ss_pred             chhHHhccchhhcccchHHHHHHHHHHhccCcc----cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            334444555555556666666666666665554    3355666666666666666666666666666666666666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660         121 QCLFHLKKFEDCTHLCDELLKENPTDS  147 (337)
Q Consensus       121 ~a~~~lg~~~eA~~~~~~al~l~P~~~  147 (337)
                      ....++++|+.....-.+.+++.|++.
T Consensus       117 lLQ~QmRd~~~~~~tr~~LLql~~~~r  143 (700)
T KOG1156|consen  117 LLQIQMRDYEGYLETRNQLLQLRPSQR  143 (700)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhhhH
Confidence            666666666666666666666655553

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.79  E-value=6.1e-05  Score=49.18  Aligned_cols=42  Identities=17%  Similarity=0.158  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660         114 KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTS  155 (337)
Q Consensus       114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~  155 (337)
                      .+++.+|.++..+|++++|++.|+++++.+|+|..+...+++
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            578999999999999999999999999999999998877654

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.79  E-value=0.00016  Score=49.28  Aligned_cols=46  Identities=22%  Similarity=0.363  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         114 KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ..+|.+|.+++.+|+|.+|.++++.+|+++|+|.++..+...+..+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~   47 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDK   47 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence            3578889999999999999999999999999999998888777654

>KOG1174|consensus

Probab=97.77  E-value=0.00033  Score=66.51  Aligned_cols=109  Identities=10%  Similarity=0.088  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ  121 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~  121 (337)
                      ..+.-.|...|..++|+.|+.+-.++|..+|.    +..+|.-.|.+...+|+..+|+-.++.|..+-|.....|-.+-.
T Consensus       301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r----~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~h  376 (564)
T KOG1174|consen  301 SHWFVHAQLLYDEKKFERALNFVEKCIDSEPR----NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFH  376 (564)
T ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc----cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            34445566667777888888888888888877    55677777888888888888888888888888888888888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660         122 CLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT  154 (337)
Q Consensus       122 a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  154 (337)
                      ||++.|++.||....+.+.+.-|++...+.+++
T Consensus       377 sYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g  409 (564)
T KOG1174|consen  377 SYLAQKRFKEANALANWTIRLFQNSARSLTLFG  409 (564)
T ss_pred             HHHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence            888888888888888888887788777777764

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.76  E-value=0.00016  Score=63.28  Aligned_cols=80  Identities=14%  Similarity=0.187  Sum_probs=71.2

Q ss_pred             HHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy5660          23 EGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDC  102 (337)
Q Consensus        23 ealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~  102 (337)
                      +.-|+|+..|      ..+..+.-.|--+...|+|+.|.+.|+..++++|.    +.-++.|||.+.+--|+|.-|.+|+
T Consensus        87 DftQaLai~P------~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~----y~Ya~lNRgi~~YY~gR~~LAq~d~  156 (297)
T COG4785          87 DFSQALAIRP------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT----YNYAHLNRGIALYYGGRYKLAQDDL  156 (297)
T ss_pred             hhhhhhhcCC------CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc----chHHHhccceeeeecCchHhhHHHH
Confidence            4456788887      88899999999999999999999999999999999    5688999999999999999999999


Q ss_pred             HHHHhhCCCC
Q psy5660         103 QIALKLKPDY  112 (337)
Q Consensus       103 ~~Al~l~P~~  112 (337)
                      .+--+-||++
T Consensus       157 ~~fYQ~D~~D  166 (297)
T COG4785         157 LAFYQDDPND  166 (297)
T ss_pred             HHHHhcCCCC
Confidence            8877777664

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.76  E-value=0.0035  Score=56.39  Aligned_cols=116  Identities=16%  Similarity=0.105  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP---KV  115 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~---ka  115 (337)
                      .-+..+.++|...+..|+|.+|+..|.......|..+- ...+...++-++++.++|..|+...++=+.+.|++.   -+
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~-~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~  110 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY-SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA  110 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence            45788999999999999999999999999999987654 467788899999999999999999999999999876   56


Q ss_pred             HHHHHHHHHhc--------CCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660         116 KLRAAQCLFHL--------KKFEDCTHLCDELLKENPTDSTVIDLRTS  155 (337)
Q Consensus       116 ~~r~a~a~~~l--------g~~~eA~~~~~~al~l~P~~~~~~~~l~~  155 (337)
                      +|.+|.++...        .--.+|+..++..+.--|+++-+.....+
T Consensus       111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~  158 (254)
T COG4105         111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR  158 (254)
T ss_pred             HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence            77788886643        23467888889999999998644443333

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.72  E-value=0.00083  Score=62.49  Aligned_cols=102  Identities=25%  Similarity=0.302  Sum_probs=82.0

Q ss_pred             HHHHHHhC--cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q psy5660          48 GNFNFKCN--KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFH  125 (337)
Q Consensus        48 Gn~~~k~g--~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~  125 (337)
                      +...+..|  ++.+|...|++..+..+.    ...+++..|.|++.+|+|.+|...+..|+..+|+++.++.+++.|...
T Consensus       172 awv~l~~g~e~~~~A~y~f~El~~~~~~----t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~  247 (290)
T PF04733_consen  172 AWVNLATGGEKYQDAFYIFEELSDKFGS----TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH  247 (290)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHHCCS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCchhHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            33445555  699999999997665444    457788899999999999999999999999999999999999999999


Q ss_pred             cCCH-HHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660         126 LKKF-EDCTHLCDELLKENPTDSTVIDLR  153 (337)
Q Consensus       126 lg~~-~eA~~~~~~al~l~P~~~~~~~~l  153 (337)
                      +|+. +.+.++..++...+|+++-+..+.
T Consensus       248 ~gk~~~~~~~~l~qL~~~~p~h~~~~~~~  276 (290)
T PF04733_consen  248 LGKPTEAAERYLSQLKQSNPNHPLVKDLA  276 (290)
T ss_dssp             TT-TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred             hCCChhHHHHHHHHHHHhCCCChHHHHHH
Confidence            9999 667778888888899988776554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.71  E-value=0.0044  Score=53.24  Aligned_cols=102  Identities=17%  Similarity=0.211  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHH
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD--YPKVKLRA  119 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~--~~ka~~r~  119 (337)
                      .+....||.+...|+|.+|..+|.+++.--=.+   .+.....+|.+.+.++++..|....+...+.+|.  .+..+...
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~---d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~  166 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAH---DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF  166 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC---CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence            466779999999999999999999999742221   2367778999999999999999999999999985  56788889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENPTD  146 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P~~  146 (337)
                      |.++...|++.+|...++.++..-|+-
T Consensus       167 aR~laa~g~~a~Aesafe~a~~~ypg~  193 (251)
T COG4700         167 ARTLAAQGKYADAESAFEVAISYYPGP  193 (251)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence            999999999999999999999998774

>KOG3785|consensus

Probab=97.68  E-value=0.0017  Score=60.77  Aligned_cols=105  Identities=21%  Similarity=0.360  Sum_probs=67.9

Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccC--------------------------------
Q psy5660          47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKN--------------------------------   94 (337)
Q Consensus        47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~--------------------------------   94 (337)
                      .|-.+|..|+|++|+..|+-+...+.-    .+.++.|+|-|.+-+|.                                
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~----~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk  138 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNKDDA----PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEK  138 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhccCCC----CcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHH
Confidence            577889999999999999988874322    23444555555444444                                


Q ss_pred             ----------------------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660          95 ----------------------------YRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD  146 (337)
Q Consensus        95 ----------------------------~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~  146 (337)
                                                  |++||+.+.++|.-+|.+...-..+|.||+++.-|+-+.+.++-.|+..|++
T Consensus       139 ~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS  218 (557)
T KOG3785|consen  139 RILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS  218 (557)
T ss_pred             HHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence                                        5566666666666666555555566666666666666666666666666666


Q ss_pred             HHHHHHHHH
Q psy5660         147 STVIDLRTS  155 (337)
Q Consensus       147 ~~~~~~l~~  155 (337)
                      .-+.+++.-
T Consensus       219 tiA~NLkac  227 (557)
T KOG3785|consen  219 TIAKNLKAC  227 (557)
T ss_pred             HHHHHHHHH
Confidence            666555443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.64  E-value=0.0013  Score=63.67  Aligned_cols=102  Identities=15%  Similarity=0.105  Sum_probs=91.0

Q ss_pred             HhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q psy5660          53 KCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDC  132 (337)
Q Consensus        53 k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA  132 (337)
                      ..++|+.|+..+.+..+.+|.       +..-+|.+++..++..+|+....++++.+|.+...+.-.|..++..++++.|
T Consensus       181 ~t~~~~~ai~lle~L~~~~pe-------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA  253 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERDPE-------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA  253 (395)
T ss_pred             hcccHHHHHHHHHHHHhcCCc-------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence            347899999999999998875       2334788888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy5660         133 THLCDELLKENPTDSTVIDLRTSCINKHK  161 (337)
Q Consensus       133 ~~~~~~al~l~P~~~~~~~~l~~~~~~~~  161 (337)
                      +...+++.++.|++-.....++++.-...
T Consensus       254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~  282 (395)
T PF09295_consen  254 LEIAKKAVELSPSEFETWYQLAECYIQLG  282 (395)
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHhcC
Confidence            99999999999999999999988875533

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.62  E-value=0.001  Score=66.66  Aligned_cols=105  Identities=13%  Similarity=0.115  Sum_probs=92.2

Q ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q psy5660          35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK  114 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k  114 (337)
                      ..|......+.-.+..+-..|+|++|+.+.++||+..|+    ...+|...|.++-+.|++.+|....+.|..+|+.+--
T Consensus       188 ~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt----~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy  263 (517)
T PF12569_consen  188 EPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT----LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY  263 (517)
T ss_pred             CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH
Confidence            345555677788899999999999999999999999999    6799999999999999999999999999999998766


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660         115 VKLRAAQCLFHLKKFEDCTHLCDELLKEN  143 (337)
Q Consensus       115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~  143 (337)
                      .--..++.+++.|+.++|.+.+..-.+-+
T Consensus       264 iNsK~aKy~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  264 INSKCAKYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence            66667888999999999999988776544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1127|consensus

Probab=97.58  E-value=0.00098  Score=69.33  Aligned_cols=112  Identities=12%  Similarity=0.129  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ  121 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~  121 (337)
                      .++..+|-.+.+.+++.+|+..++.|+..+|.|    -.+|..+|.+|..-|.|..|+..+++|..++|.+.-+-|..|.
T Consensus       563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD----~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~  638 (1238)
T KOG1127|consen  563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD----YNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAV  638 (1238)
T ss_pred             hhhhhccccccCccchhhHHHHHHHHhcCCchh----HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHH
Confidence            455568888899999999999999999999995    4899999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660         122 CLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus       122 a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      ....+|+|.+|+..+...+.--......+..++.+.
T Consensus       639 ~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~  674 (1238)
T KOG1127|consen  639 MECDNGKYKEALDALGLIIYAFSLERTGQNGLAESV  674 (1238)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            999999999999999998876555445555554443

>KOG0551|consensus

Probab=97.50  E-value=0.0033  Score=58.39  Aligned_cols=96  Identities=16%  Similarity=0.205  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .|--|.+++-..+-.|+|+.|+.-.++|+..+|.    +.-+|..-|.|++.|..+..|++.|+..+.++-         
T Consensus       118 navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~----h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~---------  184 (390)
T KOG0551|consen  118 NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT----HLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD---------  184 (390)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc----hhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH---------
Confidence            3455667888888889999999999999999999    778999899999999999999999999866553         


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                                 +|..+.+-+-.++|++...+.....+.+.
T Consensus       185 -----------e~K~~~~l~~l~~k~~~~~L~~er~~rK~  213 (390)
T KOG0551|consen  185 -----------EAKKAIELRNLIHKNDKLKLIEERDVRKK  213 (390)
T ss_pred             -----------HHHHHHHHHhhcCcchHHHHHHHHHHHHH
Confidence                       33333333333678888777766666554

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.48  E-value=0.00011  Score=45.29  Aligned_cols=33  Identities=24%  Similarity=0.411  Sum_probs=30.6

Q ss_pred             HHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHH
Q psy5660          63 NYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL   99 (337)
Q Consensus        63 ~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al   99 (337)
                      +|++||+++|+    ++.+|.|+|.++...|++++|+
T Consensus         1 ~y~kAie~~P~----n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPN----NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCC----CHHHHHHHHHHHHHCcCHHhhc
Confidence            48999999999    6799999999999999999986

>KOG0545|consensus

Probab=97.48  E-value=0.0021  Score=57.30  Aligned_cols=97  Identities=18%  Similarity=0.285  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy5660          79 AQLYNNRAASNFFLKNYRSCLTDCQIALKL--------KPD----------YPKVKLRAAQCLFHLKKFEDCTHLCDELL  140 (337)
Q Consensus        79 ~~~~~nra~~~~~lg~~~~Al~d~~~Al~l--------~P~----------~~ka~~r~a~a~~~lg~~~eA~~~~~~al  140 (337)
                      ..+....|.-++++|+|.+|...|+.|+..        .|.          +...+.+.++|++..|+|-++++.|...|
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            345666899999999999999999998753        333          34567899999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q psy5660         141 KENPTDSTVIDLRTSCINK---HKEILRNERKQAQQVK  175 (337)
Q Consensus       141 ~l~P~~~~~~~~l~~~~~~---~~~~~~~~~k~~~~~~  175 (337)
                      ..+|+|..+...++++...   ..+++++..+..+...
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp  295 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP  295 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence            9999999888877777654   4455566666554443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.47  E-value=0.00075  Score=64.26  Aligned_cols=102  Identities=13%  Similarity=0.197  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC--------Cc------hHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA--------DN------DVNAQLYNNRAASNFFLKNYRSCLTDCQI  104 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~--------~~------~~~~~~~~nra~~~~~lg~~~~Al~d~~~  104 (337)
                      +.-..-...|..+|++|+|..|+.-|..|+++...        .+      .+.+.+-..+..||+++++.+-|+....+
T Consensus       174 kwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr  253 (569)
T PF15015_consen  174 KWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHR  253 (569)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence            45556667788889999999888888888887432        11      23455566789999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy5660         105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELL  140 (337)
Q Consensus       105 Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al  140 (337)
                      .|-++|.+..-++|.|.|+..+.+|.+|.+..--+.
T Consensus       254 sI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  254 SINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             hhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988755443

>KOG2796|consensus

Probab=97.47  E-value=0.0029  Score=57.11  Aligned_cols=121  Identities=16%  Similarity=0.230  Sum_probs=96.5

Q ss_pred             HHHhhccc-cCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc--CCchHHHHHHHHHHHHHHHccCHHHH
Q psy5660          22 VEGLQQLK-YDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC--ADNDVNAQLYNNRAASNFFLKNYRSC   98 (337)
Q Consensus        22 lealqaL~-~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p--~~~~~~~~~~~nra~~~~~lg~~~~A   98 (337)
                      ++++..+. ++|     ++...-....|...++.|+-+.|-.+++..-+...  +.-.-+..+..|.+.+|+-.+||.+|
T Consensus       197 ~d~~~~vi~~~~-----e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a  271 (366)
T KOG2796|consen  197 VDAYHSVIKYYP-----EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEA  271 (366)
T ss_pred             HHHHHHHHHhCC-----cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHH
Confidence            45555543 343     34455666789999999999999988884332211  11122557788899999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660          99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS  147 (337)
Q Consensus        99 l~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~  147 (337)
                      ...+.+.+..||.++-+..+.|.|++-+|+..+|++....++.+.|...
T Consensus       272 ~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  272 HRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             HHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            9999999999999999999999999999999999999999999999864

>PRK10941 hypothetical protein; Provisional

Probab=97.46  E-value=0.0017  Score=59.56  Aligned_cols=86  Identities=14%  Similarity=0.080  Sum_probs=77.2

Q ss_pred             CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          74 DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLR  153 (337)
Q Consensus        74 ~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l  153 (337)
                      +..+......|+-.++++.+++..|+.++++.+.++|+++.-+.-+|.++.++|.+..|...++..++..|+++.+..+.
T Consensus       176 ~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik  255 (269)
T PRK10941        176 NIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR  255 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence            34567788899999999999999999999999999999999888899999999999999999999999999998887766


Q ss_pred             HHHHHH
Q psy5660         154 TSCINK  159 (337)
Q Consensus       154 ~~~~~~  159 (337)
                      .++...
T Consensus       256 ~ql~~l  261 (269)
T PRK10941        256 AQIHSI  261 (269)
T ss_pred             HHHHHH
Confidence            665443

>KOG4642|consensus

Probab=97.43  E-value=0.00022  Score=63.14  Aligned_cols=74  Identities=18%  Similarity=0.261  Sum_probs=64.5

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660          85 RAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus        85 ra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      -|.+++.-+.|..|++.|.+||.++|..+..|-++|.|++++++++.+...|+++++++|+.......++.+..
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l   89 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL   89 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence            35556667889999999999999999999999999999999999999999999999999998766666665543

>PRK15331 chaperone protein SicA; Provisional

Probab=97.43  E-value=0.0034  Score=52.89  Aligned_cols=79  Identities=14%  Similarity=0.045  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660          80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus        80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      .+|. .|--.+..|+|++|...++-...++|.|.+.++.+|-|+..+++|++|+..|..+..++++++...-..+.|...
T Consensus        39 ~iY~-~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~  117 (165)
T PRK15331         39 GLYA-HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL  117 (165)
T ss_pred             HHHH-HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence            4444 788888999999999999999999999999999999999999999999999999999999998777777777655

>KOG1130|consensus

Probab=97.41  E-value=0.00045  Score=65.63  Aligned_cols=102  Identities=19%  Similarity=0.198  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHH----HHhhCC--CCHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQI----ALKLKP--DYPK  114 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~----Al~l~P--~~~k  114 (337)
                      ...+-..|.-+++.|+++..+.++..||+....|-...+.+|+.+|.+|+.+++|.+|+.+-.-    |-.+..  ...|
T Consensus        17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK   96 (639)
T KOG1130|consen   17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK   96 (639)
T ss_pred             HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence            4455578999999999999999999999999888888999999999999999999999975443    333332  3567


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         115 VKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       115 a~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                      +--++|..+-.+|.|++|+-+|.+-|.+
T Consensus        97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~  124 (639)
T KOG1130|consen   97 SSGNLGNTLKVKGAFDEALTCCFRHLDF  124 (639)
T ss_pred             ccccccchhhhhcccchHHHHHHHHhHH
Confidence            8889999999999999999999987754

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.41  E-value=0.00096  Score=54.93  Aligned_cols=72  Identities=17%  Similarity=0.229  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV  149 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~  149 (337)
                      .+..+++.|...++.|+|.+|+..++.....-|-.   ..|.+.+|.+++..+++++|+..+++-++++|+|+.+
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence            45778889999999999999999999998887754   5899999999999999999999999999999999654

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.36  E-value=0.002  Score=63.99  Aligned_cols=102  Identities=18%  Similarity=0.189  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH-
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL-  117 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~-  117 (337)
                      +.+--+...|..+..+|+.+.|++.|++++.....-+.+...++..+|.|++.+.+|++|...+.+.++.+ ++.++.| 
T Consensus       265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~  343 (468)
T PF10300_consen  265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYA  343 (468)
T ss_pred             CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHH
Confidence            56777889999999999999999999999987777777888999999999999999999999999988855 4667665 


Q ss_pred             -HHHHHHHhcCCH-------HHHHHHHHHHHh
Q psy5660         118 -RAAQCLFHLKKF-------EDCTHLCDELLK  141 (337)
Q Consensus       118 -r~a~a~~~lg~~-------~eA~~~~~~al~  141 (337)
                       -.|-|+..+|+.       ++|...+.++-.
T Consensus       344 Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  344 YLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence             458889999999       555555555443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.30  E-value=0.00044  Score=42.07  Aligned_cols=30  Identities=17%  Similarity=0.284  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q psy5660         115 VKLRAAQCLFHLKKFEDCTHLCDELLKENP  144 (337)
Q Consensus       115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~P  144 (337)
                      +|+.+|.++..+|++++|+.+++++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            344444444444444444444444444444

...

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.30  E-value=0.00046  Score=41.98  Aligned_cols=33  Identities=30%  Similarity=0.366  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q psy5660          80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY  112 (337)
Q Consensus        80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~  112 (337)
                      .+|.++|.++..+|++++|+..+++|++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            578999999999999999999999999999964

...

>KOG3824|consensus

Probab=97.30  E-value=0.0026  Score=58.50  Aligned_cols=83  Identities=17%  Similarity=0.104  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      .+.+-.|.|.-..+.|+.++|...+..|+.++|+++.++.+.|......++.-+|-++|-++|.++|.|.+++.++.+..
T Consensus       115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~  194 (472)
T KOG3824|consen  115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT  194 (472)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence            44555566666678899999999999999999999999999999999999999999999999999999998887766544


Q ss_pred             HHH
Q psy5660         158 NKH  160 (337)
Q Consensus       158 ~~~  160 (337)
                      -..
T Consensus       195 plV  197 (472)
T KOG3824|consen  195 PLV  197 (472)
T ss_pred             hHH
Confidence            333

>KOG4555|consensus

Probab=97.24  E-value=0.0019  Score=52.25  Aligned_cols=76  Identities=16%  Similarity=0.197  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK  114 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k  114 (337)
                      +.|..|.+++..+--+|+-++|+...++|+++...........|..||..|..+|+-+.|..|+..|-++.....+
T Consensus        75 ~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr  150 (175)
T KOG4555|consen   75 ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR  150 (175)
T ss_pred             cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence            6678899999999999999999999999999987666667889999999999999999999999999988876554

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.22  E-value=0.002  Score=55.00  Aligned_cols=72  Identities=17%  Similarity=0.099  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHh----------CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc-----------CHHH
Q psy5660          39 ELATTYKDEGNFNFKC----------NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK-----------NYRS   97 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~----------g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg-----------~~~~   97 (337)
                      ..++++.+-|..+...          .-+++|+.-|++||.++|+    ...++.|+|.++..++           .|++
T Consensus        23 ~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~----~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~k   98 (186)
T PF06552_consen   23 LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN----KHDALWCLGNAYTSLAFLTPDTAEAEEYFEK   98 (186)
T ss_dssp             T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-----HHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence            4567777777666543          2478899999999999999    7789999999998875           3889


Q ss_pred             HHHHHHHHHhhCCCCHH
Q psy5660          98 CLTDCQIALKLKPDYPK  114 (337)
Q Consensus        98 Al~d~~~Al~l~P~~~k  114 (337)
                      |..++++|...+|+|.-
T Consensus        99 A~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   99 ATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             HHHHHHHHHHH-TT-HH
T ss_pred             HHHHHHHHHhcCCCcHH
Confidence            99999999999998763

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1130|consensus

Probab=97.20  E-value=0.0023  Score=60.95  Aligned_cols=108  Identities=16%  Similarity=0.183  Sum_probs=63.4

Q ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccc--cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----
Q psy5660          35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIK--CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL----  108 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~--p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l----  108 (337)
                      +.+.....+|-+.||.|+-.|+|++||.+-..-+.+.  -.|..-.-.+++|+|.||.-+|++..|+..|++++.+    
T Consensus       189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel  268 (639)
T KOG1130|consen  189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL  268 (639)
T ss_pred             hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh
Confidence            5555666666667777777777777766655554432  2333334466666777766667766666666654332    


Q ss_pred             CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         109 KPDYP--KVKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       109 ~P~~~--ka~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                      ...-+  ...|.+|..|.-+.+++.||.+.++-|.|
T Consensus       269 g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI  304 (639)
T KOG1130|consen  269 GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI  304 (639)
T ss_pred             cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            22222  33456666666666666666666665554

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.18  E-value=0.029  Score=53.24  Aligned_cols=119  Identities=16%  Similarity=0.102  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-CCHHHH
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP-DYPKVK  116 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P-~~~ka~  116 (337)
                      -..|....+.|-..+-.|+|.+|....+++-+..+.    ...+|.--|.+-.++|++++|-....+|-++.+ ++.-+.
T Consensus        81 rrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~----p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~  156 (400)
T COG3071          81 RRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ----PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVE  156 (400)
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc----hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHH
Confidence            356777888999999999999999999997776655    446666667778899999999999999999944 456788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660         117 LRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH  160 (337)
Q Consensus       117 ~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~  160 (337)
                      ..++..+...|++..|..-...+++..|.+++...+..++.-..
T Consensus       157 ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~  200 (400)
T COG3071         157 LTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRL  200 (400)
T ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999988887776553

>KOG3785|consensus

Probab=97.15  E-value=0.0092  Score=56.00  Aligned_cols=87  Identities=16%  Similarity=0.191  Sum_probs=73.9

Q ss_pred             HHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCH
Q psy5660          50 FNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKF  129 (337)
Q Consensus        50 ~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~  129 (337)
                      ......+|..|+....-....+..   ....+-..+|.|++++|+|++|+..+..+..-+..+.+...++|-|++-+|.|
T Consensus        31 dfls~rDytGAislLefk~~~~~E---EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLDRE---EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccchh---hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence            456678999999999888755432   24577788999999999999999999999998888889999999999999999


Q ss_pred             HHHHHHHHHH
Q psy5660         130 EDCTHLCDEL  139 (337)
Q Consensus       130 ~eA~~~~~~a  139 (337)
                      .+|...-.++
T Consensus       108 ~eA~~~~~ka  117 (557)
T KOG3785|consen  108 IEAKSIAEKA  117 (557)
T ss_pred             HHHHHHHhhC
Confidence            9999876554

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.14  E-value=0.0098  Score=53.96  Aligned_cols=77  Identities=16%  Similarity=0.234  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHH
Q psy5660          82 YNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV---IDLRTS  155 (337)
Q Consensus        82 ~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~---~~~l~~  155 (337)
                      .+|-|.-+++.|+|..|...+..-++.-|+.   ..|+|.+|.+++.+|+|++|...|..+.+-.|.++.+   .--++.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7889999999999999999999999999976   4899999999999999999999999999998887544   444444


Q ss_pred             HHH
Q psy5660         156 CIN  158 (337)
Q Consensus       156 ~~~  158 (337)
                      +..
T Consensus       224 ~~~  226 (262)
T COG1729         224 SLG  226 (262)
T ss_pred             HHH
Confidence            443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.12  E-value=0.0023  Score=43.59  Aligned_cols=40  Identities=18%  Similarity=0.292  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .+++.+|.+++++|+|..|...|+.+|+++|+|..|.--.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            3566799999999999999999999999999998876543

>KOG0376|consensus

Probab=97.12  E-value=0.00033  Score=67.71  Aligned_cols=95  Identities=16%  Similarity=0.297  Sum_probs=84.5

Q ss_pred             ChhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHH
Q psy5660          19 SPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC   98 (337)
Q Consensus        19 ~~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~A   98 (337)
                      ..-+-+-++|..+|      .-|.-+-+++.++++.++|..|+.-..+||+.+|.    ...+|..||.+++.++.+.+|
T Consensus        22 ~avdlysKaI~ldp------nca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~----~~K~Y~rrg~a~m~l~~~~~A   91 (476)
T KOG0376|consen   22 VAVDLYSKAIELDP------NCAIYFANRALAHLKVESFGGALHDALKAIELDPT----YIKAYVRRGTAVMALGEFKKA   91 (476)
T ss_pred             HHHHHHHHHHhcCC------cceeeechhhhhheeechhhhHHHHHHhhhhcCch----hhheeeeccHHHHhHHHHHHH
Confidence            34556778888888      77888889999999999999999999999999998    779999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660          99 LTDCQIALKLKPDYPKVKLRAAQCL  123 (337)
Q Consensus        99 l~d~~~Al~l~P~~~ka~~r~a~a~  123 (337)
                      +.+++....+.|+.+++......|-
T Consensus        92 ~~~l~~~~~l~Pnd~~~~r~~~Ec~  116 (476)
T KOG0376|consen   92 LLDLEKVKKLAPNDPDATRKIDECN  116 (476)
T ss_pred             HHHHHHhhhcCcCcHHHHHHHHHHH
Confidence            9999999999999998876665553

>KOG0495|consensus

Probab=97.11  E-value=0.0062  Score=61.12  Aligned_cols=109  Identities=14%  Similarity=0.036  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      .....|...|..+-..++.+.|...|+.++...|+    ...+|.-++..-.+.|+.-+|...++++..-||++.--|+.
T Consensus       683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~----~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle  758 (913)
T KOG0495|consen  683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN----SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLE  758 (913)
T ss_pred             chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC----CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHH
Confidence            44567778888888889999999999999999988    55788888888888889999999999999999999988888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVID  151 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~  151 (337)
                      .-+.-+..|..+.|.....++|+-.|++..+..
T Consensus       759 ~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWa  791 (913)
T KOG0495|consen  759 SIRMELRAGNKEQAELLMAKALQECPSSGLLWA  791 (913)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCccchhHH
Confidence            888888999999999999999998888865543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.09  E-value=0.028  Score=48.65  Aligned_cols=106  Identities=9%  Similarity=0.025  Sum_probs=84.9

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH-
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV-  115 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka-  115 (337)
                      ..--+....+.+-.++..+++++|+.....++.. +.|..+.+.+-.++|.+.+.+|.++.|+......-  + .+..+ 
T Consensus        85 t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~-~~w~~~  160 (207)
T COG2976          85 TIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQQKKADAALKTLDTIK--E-ESWAAI  160 (207)
T ss_pred             cHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--c-ccHHHH
Confidence            3344556667888889999999999999999975 55666788889999999999999999988776532  2 22333 


Q ss_pred             -HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660         116 -KLRAAQCLFHLKKFEDCTHLCDELLKENPTD  146 (337)
Q Consensus       116 -~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~  146 (337)
                       .-.+|.++...|+-++|...|.+++..+++.
T Consensus       161 ~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         161 VAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence             4567999999999999999999999987443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.09  E-value=0.027  Score=47.11  Aligned_cols=102  Identities=24%  Similarity=0.270  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHH-HHHHccCHHHHHHHHHHHHhhCC---CCHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAA-SNFFLKNYRSCLTDCQIALKLKP---DYPKV  115 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~-~~~~lg~~~~Al~d~~~Al~l~P---~~~ka  115 (337)
                      ....+...|......+++..|+..+.+++...+...    ......+. ++...|++..|+..+.+++..+|   .....
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  169 (291)
T COG0457          94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPD----LAEALLALGALYELGDYEEALELYEKALELDPELNELAEA  169 (291)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHH
Confidence            334444555555555555555555555555444321    12222222 45555555555555555555444   23344


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660         116 KLRAAQCLFHLKKFEDCTHLCDELLKENPT  145 (337)
Q Consensus       116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~  145 (337)
                      ++..+..+...++++.|+..+.+++...+.
T Consensus       170 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         170 LLALGALLEALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             HHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            444444455555555555555555555555

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.07  E-value=0.02  Score=47.88  Aligned_cols=96  Identities=22%  Similarity=0.270  Sum_probs=84.5

Q ss_pred             HHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCC
Q psy5660          50 FNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD-YPKVKLRAAQCLFHLKK  128 (337)
Q Consensus        50 ~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~-~~ka~~r~a~a~~~lg~  128 (337)
                      .++..|++..|+..|.+++...+. .......+.+++..+...+++..|+..+.+++...+. ...++..++.++...++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPE-LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC-ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence            788999999999999999886652 0115566777777788899999999999999999999 79999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCC
Q psy5660         129 FEDCTHLCDELLKENPTD  146 (337)
Q Consensus       129 ~~eA~~~~~~al~l~P~~  146 (337)
                      +..|+..+..++...|..
T Consensus       218 ~~~a~~~~~~~~~~~~~~  235 (291)
T COG0457         218 YEEALEYYEKALELDPDN  235 (291)
T ss_pred             HHHHHHHHHHHHhhCccc
Confidence            999999999999999883

>KOG4340|consensus

Probab=97.02  E-value=0.002  Score=59.05  Aligned_cols=94  Identities=17%  Similarity=0.235  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC----CC---
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK----PD---  111 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~----P~---  111 (337)
                      ..|....+.|-..|+.|+|+.|++.|+.|++...-    ++.+-+|.|.||++.|+|.+|++.....++..    |.   
T Consensus       142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy----qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgI  217 (459)
T KOG4340|consen  142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY----QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGI  217 (459)
T ss_pred             CccchhccchheeeccccHHHHHHHHHHHHhhcCC----CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence            45667788999999999999999999999999876    44778899999999999999999988887642    21   


Q ss_pred             -------------C---------HHHHHHHHHHHHhcCCHHHHHHHH
Q psy5660         112 -------------Y---------PKVKLRAAQCLFHLKKFEDCTHLC  136 (337)
Q Consensus       112 -------------~---------~ka~~r~a~a~~~lg~~~eA~~~~  136 (337)
                                   |         +.|+...+-++++.|+++.|.+.+
T Consensus       218 Gm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL  264 (459)
T KOG4340|consen  218 GMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL  264 (459)
T ss_pred             cceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence                         1         345556677888899998887764

>KOG4507|consensus

Probab=96.91  E-value=0.0048  Score=61.11  Aligned_cols=101  Identities=13%  Similarity=-0.007  Sum_probs=89.4

Q ss_pred             HhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q psy5660          53 KCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDC  132 (337)
Q Consensus        53 k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA  132 (337)
                      ..|+-..|+.|...|+...|...   -.-..|+|.+.++-|-.-.|...+.++|.++-..+-.++..|++++.+.+.+.|
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~~---~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a  695 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQQ---DVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA  695 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhhh---cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence            46888999999999999988632   245678999999999889999999999999988888999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         133 THLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       133 ~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      ++.++.+++++|++....+-+..+
T Consensus       696 ~~~~~~a~~~~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  696 LEAFRQALKLTTKCPECENSLKLI  719 (886)
T ss_pred             HHHHHHHHhcCCCChhhHHHHHHH
Confidence            999999999999999887766554

>KOG2376|consensus

Probab=96.89  E-value=0.018  Score=57.22  Aligned_cols=106  Identities=15%  Similarity=0.185  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccccC---------------------------CchHHHHHHHHHHHHHHHccC
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA---------------------------DNDVNAQLYNNRAASNFFLKN   94 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~---------------------------~~~~~~~~~~nra~~~~~lg~   94 (337)
                      ..+.-+|..+++.|+|++|+..|+..++-+.+                           .++-.-.+++|+|-++...|+
T Consensus       111 ~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gk  190 (652)
T KOG2376|consen  111 KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGK  190 (652)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhccc
Confidence            34556899999999999999999998654321                           222355788999999999999


Q ss_pred             HHHHHHHHHHHHhhC-------CCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660          95 YRSCLTDCQIALKLK-------PDY--------PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS  147 (337)
Q Consensus        95 ~~~Al~d~~~Al~l~-------P~~--------~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~  147 (337)
                      |.+|+..+.+|+++.       -.+        .-....+|.++..+|+-++|.+.|...++.+|.+.
T Consensus       191 y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  191 YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE  258 (652)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence            999999999995542       122        12345678899999999999999999999887764

>KOG1941|consensus

Probab=96.83  E-value=0.0076  Score=56.70  Aligned_cols=108  Identities=19%  Similarity=0.217  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccc--cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-------
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIK--CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY-------  112 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~--p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~-------  112 (337)
                      ......||.+...+.++++++.++.|+...  -+|+.+.-.++..+|..+-++++|++|+-...+|.++-...       
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            445568899999999999999999999874  34566677888999999999999999999999998874321       


Q ss_pred             ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHH
Q psy5660         113 ---PKVKLRAAQCLFHLKKFEDCTHLCDELLKE--NPTDSTV  149 (337)
Q Consensus       113 ---~ka~~r~a~a~~~lg~~~eA~~~~~~al~l--~P~~~~~  149 (337)
                         .-++|+++.++..+|++-+|.++|+.+-++  ..+|..+
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~  244 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL  244 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence               246789999999999999999999999876  3444433

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.77  E-value=0.0027  Score=37.96  Aligned_cols=32  Identities=22%  Similarity=0.567  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660         115 VKLRAAQCLFHLKKFEDCTHLCDELLKENPTD  146 (337)
Q Consensus       115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~  146 (337)
                      |++++|.++..+|++++|+..++++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            56777777777777777777777777776653

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.75  E-value=0.017  Score=45.32  Aligned_cols=96  Identities=14%  Similarity=0.062  Sum_probs=77.1

Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHhhCCCCHHH
Q psy5660          47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK-----------NYRSCLTDCQIALKLKPDYPKV  115 (337)
Q Consensus        47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg-----------~~~~Al~d~~~Al~l~P~~~ka  115 (337)
                      ++..+|++|++-+|++.....|...+++.. ...++.-.|.++.++.           -...|++.+.++..+.|.....
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~-~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~   80 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDES-SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS   80 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCc-hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence            567889999999999999999998887552 1245555666665553           2567889999999999999888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660         116 KLRAAQCLFHLKKFEDCTHLCDELLKEN  143 (337)
Q Consensus       116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~  143 (337)
                      +|.+|.-+-....|++|..-++++|.+.
T Consensus        81 L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   81 LFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            8888888888888999999999998873

>KOG4340|consensus

Probab=96.75  E-value=0.0088  Score=54.94  Aligned_cols=86  Identities=16%  Similarity=0.155  Sum_probs=77.2

Q ss_pred             HHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHH
Q psy5660          51 NFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFE  130 (337)
Q Consensus        51 ~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~  130 (337)
                      +.+..+|.+||++.+--.+.+|.    +-..++-+|.||+...+|..|..++.+.-.+-|...+..+..|+.++..+.+.
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~----~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~A   95 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPR----SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYA   95 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccH
Confidence            37788999999999999999987    45778889999999999999999999999999999998888899999999999


Q ss_pred             HHHHHHHHHH
Q psy5660         131 DCTHLCDELL  140 (337)
Q Consensus       131 eA~~~~~~al  140 (337)
                      +|+.......
T Consensus        96 DALrV~~~~~  105 (459)
T KOG4340|consen   96 DALRVAFLLL  105 (459)
T ss_pred             HHHHHHHHhc
Confidence            9998876544

>KOG1308|consensus

Probab=96.74  E-value=0.00072  Score=62.88  Aligned_cols=69  Identities=17%  Similarity=0.220  Sum_probs=61.2

Q ss_pred             HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660          91 FLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus        91 ~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      .-|.++.||..|..||.++|...-.|-.+|.+++.+++...|++.|..++.++|+...-...++.+.+.
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl  194 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL  194 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH
Confidence            357899999999999999999999999999999999999999999999999999987666655555554

>KOG3081|consensus

Probab=96.72  E-value=0.048  Score=49.40  Aligned_cols=102  Identities=15%  Similarity=0.166  Sum_probs=65.3

Q ss_pred             HHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc----cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660          49 NFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL----KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLF  124 (337)
Q Consensus        49 n~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l----g~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~  124 (337)
                      +++.+..+.+-|.....+..+.+.+      .....+|.++.++    +.+.+|.-.|+.--+--|..+......|.|++
T Consensus       145 qI~lk~~r~d~A~~~lk~mq~ided------~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l  218 (299)
T KOG3081|consen  145 QILLKMHRFDLAEKELKKMQQIDED------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL  218 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccchH------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHH
Confidence            4445556666666666666665443      3333344444443    34777777777766655556777777778888


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         125 HLKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       125 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      .+|+|++|...++.+|.-++++++.+..+-.+
T Consensus       219 ~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~  250 (299)
T KOG3081|consen  219 QLGRYEEAESLLEEALDKDAKDPETLANLIVL  250 (299)
T ss_pred             HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence            88888888888888887777777666555443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.67  E-value=0.052  Score=53.23  Aligned_cols=71  Identities=17%  Similarity=0.161  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCHHH
Q psy5660          79 AQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD--YPKVKLRAAQCLFHLKKFEDCTHLCDELLKE-NPTDSTV  149 (337)
Q Consensus        79 ~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~--~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l-~P~~~~~  149 (337)
                      ..+...+|.|..++|+.++|+..++..++..|.  +...++++..|++.++.|.++...+.+.=.+ -|....+
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti  332 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATI  332 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHH
Confidence            445566788999999999999999999988775  5678889999999999999999888876433 2444433

The molecular function of this protein is uncertain.

>smart00028 TPR Tetratricopeptide repeats

Probab=96.64  E-value=0.0033  Score=36.16  Aligned_cols=31  Identities=26%  Similarity=0.356  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q psy5660          81 LYNNRAASNFFLKNYRSCLTDCQIALKLKPD  111 (337)
Q Consensus        81 ~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~  111 (337)
                      +|.++|.++..+|++..|+..++++++++|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            3455555555555555555555555555543

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.64  E-value=0.042  Score=58.87  Aligned_cols=104  Identities=8%  Similarity=-0.126  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCch-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC----C-
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADND-VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD----Y-  112 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~-~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~----~-  112 (337)
                      -.+......|..++..|++..|...+.+++...+.... ....++.++|.++...|++++|...+.+++.....    . 
T Consensus       450 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~  529 (903)
T PRK04841        450 LQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHY  529 (903)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHH
Confidence            34555556889999999999999999999986554322 24567788999999999999999999999976332    1 


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         113 -PKVKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       113 -~ka~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                       ..++..+|.++...|++++|...+++++.+
T Consensus       530 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        530 ALWSLLQQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence             246678899999999999999999999986

>KOG2053|consensus

Probab=96.63  E-value=0.047  Score=56.65  Aligned_cols=102  Identities=15%  Similarity=0.064  Sum_probs=81.7

Q ss_pred             HHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCH
Q psy5660          50 FNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKF  129 (337)
Q Consensus        50 ~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~  129 (337)
                      .....+++++|+...++.++..|+    ...+..--|..+.++|.+++|....+..-...+++...+-.+-.||..+|++
T Consensus        18 d~ld~~qfkkal~~~~kllkk~Pn----~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~   93 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKKHPN----ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL   93 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHCCC----cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh
Confidence            346678899999999999999998    4455666788999999999999444444444566778888889999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         130 EDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       130 ~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      ++|..+|++++..+|+ .+....+=.+
T Consensus        94 d~~~~~Ye~~~~~~P~-eell~~lFma  119 (932)
T KOG2053|consen   94 DEAVHLYERANQKYPS-EELLYHLFMA  119 (932)
T ss_pred             hHHHHHHHHHHhhCCc-HHHHHHHHHH
Confidence            9999999999999999 5554444333

>KOG2471|consensus

Probab=96.62  E-value=0.0057  Score=59.46  Aligned_cols=120  Identities=10%  Similarity=0.071  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHH-HHccccC---CchH-HHHHHHHHHHHHHHccCHHHHHHHHHHHHh-------
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTE-GLKIKCA---DNDV-NAQLYNNRAASNFFLKNYRSCLTDCQIALK-------  107 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~-ai~~~p~---~~~~-~~~~~~nra~~~~~lg~~~~Al~d~~~Al~-------  107 (337)
                      .+..+.-+.+..|..|+|.+|++.... .|...+.   -+++ ..+.|+|+|-+|+++|.|.-++-.+.+||+       
T Consensus       239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~  318 (696)
T KOG2471|consen  239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR  318 (696)
T ss_pred             CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence            455666788889999999999987643 2333333   1222 567789999999999999999999999996       


Q ss_pred             --hCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         108 --LKP---------DYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       108 --l~P---------~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                        +.|         +.....|+.|..++..|+.-.|.+++.++.+..-.|+.++-.+++|.-.
T Consensus       319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence              122         3457789999999999999999999999999998999998888877543

>KOG3081|consensus

Probab=96.62  E-value=0.059  Score=48.84  Aligned_cols=93  Identities=19%  Similarity=0.150  Sum_probs=76.6

Q ss_pred             CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy5660          55 NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTH  134 (337)
Q Consensus        55 g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~  134 (337)
                      +++.+|.-.|++.-+..+.    ...+....|.|++.+|||.+|....+.||.-+++++.++.++-.+...+|.-.++..
T Consensus       187 ek~qdAfyifeE~s~k~~~----T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~  262 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEKTPP----TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE  262 (299)
T ss_pred             hhhhhHHHHHHHHhcccCC----ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence            4689999999998774443    457788899999999999999999999999999999999999999999999888776


Q ss_pred             HHHH-HHhhCCCCHHHHH
Q psy5660         135 LCDE-LLKENPTDSTVID  151 (337)
Q Consensus       135 ~~~~-al~l~P~~~~~~~  151 (337)
                      -+-. ....+|+++-...
T Consensus       263 r~l~QLk~~~p~h~~vk~  280 (299)
T KOG3081|consen  263 RNLSQLKLSHPEHPFVKH  280 (299)
T ss_pred             HHHHHHHhcCCcchHHHH
Confidence            5544 4445677764433

>KOG3364|consensus

Probab=96.61  E-value=0.027  Score=45.86  Aligned_cols=82  Identities=18%  Similarity=0.221  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHcc---CHHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          78 NAQLYNNRAASNFFLK---NYRSCLTDCQIALK-LKPD-YPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDL  152 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg---~~~~Al~d~~~Al~-l~P~-~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~  152 (337)
                      .....+|.|.|..+-.   +.++.|..+...++ -.|. .-.+.|.+|..++.+++|+.|+.+++.+|+.+|+|.++..+
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            4567788888888654   46778888888886 4443 34678899999999999999999999999999999999888


Q ss_pred             HHHHHHH
Q psy5660         153 RTSCINK  159 (337)
Q Consensus       153 l~~~~~~  159 (337)
                      ...++.+
T Consensus       111 k~~ied~  117 (149)
T KOG3364|consen  111 KETIEDK  117 (149)
T ss_pred             HHHHHHH
Confidence            7766543

>KOG4814|consensus

Probab=96.60  E-value=0.023  Score=56.95  Aligned_cols=101  Identities=20%  Similarity=0.140  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCch--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADND--VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~--~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      ..+.+.+-..|+.++|..|++.|...+.--|.|..  ..+-+..|++.||+.+.+.+.|++.++.|=+.+|.++-.-+..
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            35668889999999999999999999998876542  2477888999999999999999999999999999999888888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                      -.+...-|.-++|+.+.......
T Consensus       435 ~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhh
Confidence            89999999999999998888765

>KOG2376|consensus

Probab=96.58  E-value=0.067  Score=53.30  Aligned_cols=99  Identities=21%  Similarity=0.265  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCch-----------------------------HHHHHHHHHHHHHHHc
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADND-----------------------------VNAQLYNNRAASNFFL   92 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~-----------------------------~~~~~~~nra~~~~~l   92 (337)
                      .++...-|.+-+.++|++|+..-.+.+...|++..                             ......+-+|-|++++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence            45555556666666666666666666666655321                             0111123455555556


Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660          93 KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN  143 (337)
Q Consensus        93 g~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~  143 (337)
                      +..++|+.+++   .+++...+..-..|+.++.+|+|++|...|+..++.+
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~  140 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN  140 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            66666555555   3444445555555666666666666666666555543

>smart00028 TPR Tetratricopeptide repeats

Probab=96.57  E-value=0.004  Score=35.78  Aligned_cols=33  Identities=9%  Similarity=0.337  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660         114 KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD  146 (337)
Q Consensus       114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~  146 (337)
                      .+++++|.++..+|++++|+.+++++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            578999999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.47  E-value=0.024  Score=51.08  Aligned_cols=72  Identities=14%  Similarity=0.174  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV  149 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~  149 (337)
                      -+.-+++-|...++-|||.+|+..++.+....|..   .++.+.++.+++..+++++|+...++-+++.|+++.+
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence            45778889999999999999999999999988765   4899999999999999999999999999999998644

>KOG1586|consensus

Probab=96.47  E-value=0.039  Score=49.11  Aligned_cols=108  Identities=16%  Similarity=0.191  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchH--HHHHHHHHHHHHH-HccCHHHHHHHHHHHHhhCC----
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDV--NAQLYNNRAASNF-FLKNYRSCLTDCQIALKLKP----  110 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~--~~~~~~nra~~~~-~lg~~~~Al~d~~~Al~l~P----  110 (337)
                      .+.|..|.+.+| +|+..+...|+.+..++|++-.+-...  -+..+.-+|..|. .+.++.+||..|++|-+.-.    
T Consensus        71 hDaat~YveA~~-cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees  149 (288)
T KOG1586|consen   71 HDAATTYVEAAN-CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES  149 (288)
T ss_pred             hhHHHHHHHHHH-HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh
Confidence            344444444444 234445555555555555554331100  1111112233332 23455555555555544321    


Q ss_pred             --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660         111 --DYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD  146 (337)
Q Consensus       111 --~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~  146 (337)
                        .-.|+++..|.-...+++|..|+..|++.....-+|
T Consensus       150 ~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n  187 (288)
T KOG1586|consen  150 VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN  187 (288)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence              123455555555555556666666655555544344

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.45  E-value=0.069  Score=45.94  Aligned_cols=107  Identities=13%  Similarity=0.172  Sum_probs=83.8

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--
Q psy5660          34 ENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD--  111 (337)
Q Consensus        34 ~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~--  111 (337)
                      +...++....+.+.|+.+.+.|+++.|+++|.++.+. |..+.-....+.+.-.+.+..+++..+.....+|-.+-..  
T Consensus        29 n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~  107 (177)
T PF10602_consen   29 NLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG  107 (177)
T ss_pred             ccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence            3566788999999999999999999999999998775 4444446677888888889999999999999988766322  


Q ss_pred             CH--H--HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660         112 YP--K--VKLRAAQCLFHLKKFEDCTHLCDELLK  141 (337)
Q Consensus       112 ~~--k--a~~r~a~a~~~lg~~~eA~~~~~~al~  141 (337)
                      +.  +  .-.-.|.+++..++|.+|...+-.+..
T Consensus       108 d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  108 DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence            22  2  223446777888999999988866654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.30  E-value=0.1  Score=46.31  Aligned_cols=91  Identities=14%  Similarity=0.037  Sum_probs=70.4

Q ss_pred             HhCcHHHHHHHHHHHHcc---ccCCchHHHHHHHHHHHHHHHccC-------HHHHHHHHHHHHhhCCC------CHHHH
Q psy5660          53 KCNKYRNAIINYTEGLKI---KCADNDVNAQLYNNRAASNFFLKN-------YRSCLTDCQIALKLKPD------YPKVK  116 (337)
Q Consensus        53 k~g~y~~Ai~~Y~~ai~~---~p~~~~~~~~~~~nra~~~~~lg~-------~~~Al~d~~~Al~l~P~------~~ka~  116 (337)
                      ....+++|++.|.-|+-.   ...++...+.++..+|-++..+|+       +..|+..+.+|+.....      ....+
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            345689999999888754   223344578889999999999988       55666666666665432      25788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660         117 LRAAQCLFHLKKFEDCTHLCDELLKEN  143 (337)
Q Consensus       117 ~r~a~a~~~lg~~~eA~~~~~~al~l~  143 (337)
                      |.+|.....+|++++|.+++.+++..-
T Consensus       169 YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            999999999999999999999999764

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.29  E-value=0.053  Score=56.61  Aligned_cols=108  Identities=9%  Similarity=-0.129  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660          43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQC  122 (337)
Q Consensus        43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a  122 (337)
                      .|...-+.+.+.|+.++|..+|....+...-.+  ....|..+..++.+.|++++|.+.++++ ...| +...|..+..+
T Consensus       428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p--~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a  503 (697)
T PLN03081        428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP--RAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTA  503 (697)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC--CccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHH
Confidence            355555556666666666666666554221111  1234444555555666666665555442 1222 23445555555


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660         123 LFHLKKFEDCTHLCDELLKENPTDSTVIDLRT  154 (337)
Q Consensus       123 ~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  154 (337)
                      +...|+++.|...+++++.++|++......+.
T Consensus       504 ~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~  535 (697)
T PLN03081        504 CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLL  535 (697)
T ss_pred             HHHcCCcHHHHHHHHHHhCCCCCCCcchHHHH
Confidence            55666666666666666666665543333333

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.28  E-value=0.0082  Score=37.18  Aligned_cols=25  Identities=8%  Similarity=0.094  Sum_probs=12.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q psy5660         116 KLRAAQCLFHLKKFEDCTHLCDELL  140 (337)
Q Consensus       116 ~~r~a~a~~~lg~~~eA~~~~~~al  140 (337)
                      +.++|.++..+|+|++|+.+|+++|
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555533

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.26  E-value=0.0082  Score=37.18  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=11.2

Q ss_pred             HHHHHHHHHhCcHHHHHHHHHHHH
Q psy5660          45 KDEGNFNFKCNKYRNAIINYTEGL   68 (337)
Q Consensus        45 k~~Gn~~~k~g~y~~Ai~~Y~~ai   68 (337)
                      .+.|+.+.+.|+|++|+.+|++++
T Consensus         3 ~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    3 NNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344555555555555555555533

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.24  E-value=0.087  Score=55.01  Aligned_cols=113  Identities=9%  Similarity=-0.087  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--CCHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP--DYPKVKL  117 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P--~~~ka~~  117 (337)
                      ....|......|.+.|+.++|++.|.+.++.... +  +...|..+-.++.+.|.+++|...++...+..+  .+...|.
T Consensus       390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~-P--d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~  466 (697)
T PLN03081        390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA-P--NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA  466 (697)
T ss_pred             CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C--CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence            3456888889999999999999999998875332 1  346677788888899999999999999876422  2456788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      -+..++...|++++|.+.+++. ...|+......++..+
T Consensus       467 ~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~  504 (697)
T PLN03081        467 CMIELLGREGLLDEAYAMIRRA-PFKPTVNMWAALLTAC  504 (697)
T ss_pred             hHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Confidence            8899999999999999998865 3455544444444444

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.24  E-value=0.064  Score=57.47  Aligned_cols=100  Identities=8%  Similarity=0.018  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHccccC----CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-----CH
Q psy5660          43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCA----DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD-----YP  113 (337)
Q Consensus        43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~----~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~-----~~  113 (337)
                      .+...|..++..|++..|...+.+++.....    .......++.++|.++...|++++|...+.+++.+...     ..
T Consensus       533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  612 (903)
T PRK04841        533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL  612 (903)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence            3334445555555555555555555543211    00112233444555555555555555555555543211     12


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         114 KVKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                      .++..+|.++...|++++|...+.+++.+
T Consensus       613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~  641 (903)
T PRK04841        613 QCLAMLAKISLARGDLDNARRYLNRLENL  641 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            33444555555556666665555555443

>KOG1586|consensus

Probab=96.23  E-value=0.39  Score=42.91  Aligned_cols=103  Identities=12%  Similarity=0.130  Sum_probs=73.2

Q ss_pred             HHHHHHHHh-CcHHHHHHHHHHHHccccCCchH--HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHH
Q psy5660          46 DEGNFNFKC-NKYRNAIINYTEGLKIKCADNDV--NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY------PKVK  116 (337)
Q Consensus        46 ~~Gn~~~k~-g~y~~Ai~~Y~~ai~~~p~~~~~--~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~------~ka~  116 (337)
                      +.|..|-.. .++++||.+|.+|-+.-..+...  ...++...|.---.+++|.+||..+++.....-+|      +|-|
T Consensus       118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy  197 (288)
T KOG1586|consen  118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY  197 (288)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence            444444333 57899999999998764433221  22344445555567899999999999887654443      3555


Q ss_pred             H-HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q psy5660         117 L-RAAQCLFHLKKFEDCTHLCDELLKENPTDST  148 (337)
Q Consensus       117 ~-r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~  148 (337)
                      + ..|.|++...+.-.+...+++..+++|....
T Consensus       198 flkAgLChl~~~D~v~a~~ALeky~~~dP~F~d  230 (288)
T KOG1586|consen  198 FLKAGLCHLCKADEVNAQRALEKYQELDPAFTD  230 (288)
T ss_pred             HHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence            4 6688899889999999999999999998643

>PLN03077 Protein ECB2; Provisional

Probab=96.22  E-value=0.13  Score=55.09  Aligned_cols=150  Identities=10%  Similarity=-0.034  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHcc--ccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---CCCCHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKI--KCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL---KPDYPKV  115 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~--~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l---~P~~~ka  115 (337)
                      ...|....+.+.+.|+.++|++.|++.++.  .|+     ...|..+-.++.+.|++++|...++...+.   .| +...
T Consensus       554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-----~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~  627 (857)
T PLN03077        554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-----EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKH  627 (857)
T ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHH
Confidence            456778888899999999999999988874  444     244555555677889999999999988743   34 5678


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHH----------------HHHH
Q psy5660         116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK--HKEILRNERKQAQQ----------------VKKE  177 (337)
Q Consensus       116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~--~~~~~~~~~k~~~~----------------~~~~  177 (337)
                      |.-+..++.+.|++++|.+.+++. .+.|+-.....++..+...  ....+....+....                ...+
T Consensus       628 y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~  706 (857)
T PLN03077        628 YACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK  706 (857)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence            888899999999999999998875 3566654444455443221  11111111111111                1112


Q ss_pred             HHHHHHHHHHHHHccccccc
Q psy5660         178 EKEKERVLQIIRERKIKLAT  197 (337)
Q Consensus       178 ~~~~~~l~~al~~rgi~~~~  197 (337)
                      -.+...+++.++++|++-.|
T Consensus       707 ~~~a~~vr~~M~~~g~~k~~  726 (857)
T PLN03077        707 WDEVARVRKTMRENGLTVDP  726 (857)
T ss_pred             hHHHHHHHHHHHHcCCCCCC
Confidence            24556678888888887655

>KOG4507|consensus

Probab=96.11  E-value=0.087  Score=52.56  Aligned_cols=107  Identities=10%  Similarity=0.011  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHH-hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          41 ATTYKDEGNFNFK-CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        41 A~~~k~~Gn~~~k-~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      ...+...+-.|.+ +|+..+|+.||..|+...+...  ..++...+|.+..+.|...+|--.+..|+.--|....-+|.+
T Consensus       212 sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~--kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l  289 (886)
T KOG4507|consen  212 SWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHN--KDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTL  289 (886)
T ss_pred             hHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCccc--ccchhhhHHHHHHHcccccchhheeehhccCCccccccceeH
Confidence            3445566666655 5899999999999999887533  346667799999999999999888888888877777779999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENPTDSTV  149 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~  149 (337)
                      |.++.+++.+......|..+++.+|.....
T Consensus       290 ~~i~aml~~~N~S~~~ydha~k~~p~f~q~  319 (886)
T KOG4507|consen  290 GNIYAMLGEYNHSVLCYDHALQARPGFEQA  319 (886)
T ss_pred             HHHHHHHhhhhhhhhhhhhhhccCcchhHH
Confidence            999999999999999999999999876433

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.05  E-value=0.013  Score=34.88  Aligned_cols=32  Identities=22%  Similarity=0.225  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q psy5660          81 LYNNRAASNFFLKNYRSCLTDCQIALKLKPDY  112 (337)
Q Consensus        81 ~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~  112 (337)
                      +++++|.|+.++|++++|+..++++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            46677888888888888888888887777753

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.00  E-value=0.077  Score=39.00  Aligned_cols=69  Identities=13%  Similarity=0.147  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL  108 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l  108 (337)
                      ..+....+.|--+|.+.+.++|+..++++++..++.+ ..-.++.-++.+|...|+|++++...-+=+.+
T Consensus         4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~-~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE-DRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678888999999999999999999999999888744 36667777888999999999998877665443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1941|consensus

Probab=95.89  E-value=0.052  Score=51.24  Aligned_cols=73  Identities=22%  Similarity=0.273  Sum_probs=61.8

Q ss_pred             CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660          73 ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY-----PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT  145 (337)
Q Consensus        73 ~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~-----~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~  145 (337)
                      +|....-.+|.|++..+.++-++.+++.+|...+.+....     ..++..+|.++..++.++.|++.++.++++..+
T Consensus        77 ~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~  154 (518)
T KOG1941|consen   77 EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHN  154 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence            3445577889999999999999999999999998875433     267788999999999999999999999988544

>KOG2396|consensus

Probab=95.87  E-value=0.24  Score=48.71  Aligned_cols=97  Identities=18%  Similarity=0.112  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC-HHHHHHHH
Q psy5660          58 RNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKK-FEDCTHLC  136 (337)
Q Consensus        58 ~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~-~~eA~~~~  136 (337)
                      ..-+..|+.|+..-+.|.    .+|++-..-..+.++|.+--..|.+++...|+++..|.-.|.-.+..+. .+.|.+.+
T Consensus        88 ~rIv~lyr~at~rf~~D~----~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalf  163 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDV----KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALF  163 (568)
T ss_pred             HHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHH
Confidence            445677888888777754    7777766655667779999999999999999999999999998888776 99999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHH
Q psy5660         137 DELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       137 ~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      .+||+.+|+++.+..-.-+.+-
T Consensus       164 lrgLR~npdsp~Lw~eyfrmEL  185 (568)
T KOG2396|consen  164 LRGLRFNPDSPKLWKEYFRMEL  185 (568)
T ss_pred             HHHhhcCCCChHHHHHHHHHHH
Confidence            9999999999988765544443

>KOG3824|consensus

Probab=95.86  E-value=0.037  Score=51.16  Aligned_cols=81  Identities=14%  Similarity=0.053  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL  117 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~  117 (337)
                      ...|..-...+....++|+.++|...+..|+.+.|+    +..++...|.....-++.-+|-.+|-+||.++|.|.+|+.
T Consensus       113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~----~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv  188 (472)
T KOG3824|consen  113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPT----NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV  188 (472)
T ss_pred             hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCC----CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence            344555556777788999999999999999999999    5578888888888889999999999999999999999998


Q ss_pred             HHHHH
Q psy5660         118 RAAQC  122 (337)
Q Consensus       118 r~a~a  122 (337)
                      ++++.
T Consensus       189 nR~RT  193 (472)
T KOG3824|consen  189 NRART  193 (472)
T ss_pred             hhhcc
Confidence            87654

>PRK10941 hypothetical protein; Provisional

Probab=95.81  E-value=0.11  Score=47.68  Aligned_cols=78  Identities=14%  Similarity=0.033  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA  120 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a  120 (337)
                      ..-+.+.-+.+.+.+++..|+.+....+.+.|+++    .-+--||.++.++|.+..|+.|++.-++..|+.+.+-.-+.
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp----~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~  256 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDP----YEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA  256 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence            44556777888999999999999999999999965    55666999999999999999999999999999987766554


Q ss_pred             HH
Q psy5660         121 QC  122 (337)
Q Consensus       121 ~a  122 (337)
                      ++
T Consensus       257 ql  258 (269)
T PRK10941        257 QI  258 (269)
T ss_pred             HH
Confidence            44

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.69  E-value=0.51  Score=43.51  Aligned_cols=98  Identities=15%  Similarity=0.051  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHH---------------------
Q psy5660          44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDC---------------------  102 (337)
Q Consensus        44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~---------------------  102 (337)
                      -..+|......|++.+|...+..++...|.    ++.+..-+|.|++..|+.+.|...+                     
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~----~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l  212 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPE----NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL  212 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCcc----cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence            345777888999999999999999999998    4566777888888888875554333                     


Q ss_pred             -------------HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660         103 -------------QIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT  145 (337)
Q Consensus       103 -------------~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~  145 (337)
                                   .+.+..||++..+-+-+|..+...|+.++|.+.+-..++.|-+
T Consensus       213 l~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~  268 (304)
T COG3118         213 LEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG  268 (304)
T ss_pred             HHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence                         2223358999999999999999999999999998888877543

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.64  E-value=0.54  Score=51.42  Aligned_cols=94  Identities=9%  Similarity=-0.071  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHcc----ccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHH
Q psy5660          44 YKDEGNFNFKCNKYRNAIINYTEGLKI----KCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK-PDYPKVKLR  118 (337)
Q Consensus        44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~----~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~-P~~~ka~~r  118 (337)
                      |....+.+.+.|++++|.+.|.+....    .|+     ...|..+-.++.+.|++++|+..++...+.+ +.+...|..
T Consensus       545 YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-----~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns  619 (1060)
T PLN03218        545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-----HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI  619 (1060)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence            334445555555555555555555432    222     2445555555666666666666666666554 334455555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                      +..+|.+.|++++|+..|+...+.
T Consensus       620 LI~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        620 AVNSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc
Confidence            666666666666666666666554

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.64  E-value=0.019  Score=50.96  Aligned_cols=60  Identities=17%  Similarity=0.191  Sum_probs=52.1

Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660          90 FFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV  149 (337)
Q Consensus        90 ~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~  149 (337)
                      .+-++...|...+.+|+.+-|.+...|+|.|....+.|+++.|.+.|.+.|+++|.+...
T Consensus         6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g   65 (287)
T COG4976           6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG   65 (287)
T ss_pred             cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence            356788888899999999999999999999999999999999999999999999887433

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.56  E-value=0.67  Score=50.73  Aligned_cols=107  Identities=11%  Similarity=0.029  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHH
Q psy5660          43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL--KPDYPKVKLRAA  120 (337)
Q Consensus        43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l--~P~~~ka~~r~a  120 (337)
                      .|......+.+.|++++|.+.+.+.++.....   ....|..+..+|.+.|++++|+..++.....  .| +...|..+.
T Consensus       651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p---d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI  726 (1060)
T PLN03218        651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKL---GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALI  726 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Confidence            34444555666666777776666666543221   3456666777777777777777777766543  33 456677777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHH
Q psy5660         121 QCLFHLKKFEDCTHLCDELLKE--NPTDSTVIDLR  153 (337)
Q Consensus       121 ~a~~~lg~~~eA~~~~~~al~l--~P~~~~~~~~l  153 (337)
                      .+|...|++++|++.+++....  .|+......++
T Consensus       727 ~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL  761 (1060)
T PLN03218        727 TALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL  761 (1060)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            7777777777777777766543  45544444333

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.56  E-value=1.2  Score=41.91  Aligned_cols=124  Identities=16%  Similarity=0.127  Sum_probs=96.8

Q ss_pred             ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--C-C--
Q psy5660          36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL--K-P--  110 (337)
Q Consensus        36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l--~-P--  110 (337)
                      .+.+.+..+...+..+.+.|++..|.....++....+......+.+..-.|......|+-.+|+...+..+..  . +  
T Consensus       141 ~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~  220 (352)
T PF02259_consen  141 LPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID  220 (352)
T ss_pred             chhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence            3568889999999999999999999999999998764433324466666788888889999999888877771  1 0  


Q ss_pred             -----------------------------CCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660         111 -----------------------------DYPKVKLRAAQCLFHL------KKFEDCTHLCDELLKENPTDSTVIDLRTS  155 (337)
Q Consensus       111 -----------------------------~~~ka~~r~a~a~~~l------g~~~eA~~~~~~al~l~P~~~~~~~~l~~  155 (337)
                                                   ...++++.+|.-...+      +..++++..|+.+.+++|+.......++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~  300 (352)
T PF02259_consen  221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL  300 (352)
T ss_pred             cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence                                         0136777777777777      88999999999999999998877766666


Q ss_pred             HHHH
Q psy5660         156 CINK  159 (337)
Q Consensus       156 ~~~~  159 (337)
                      ....
T Consensus       301 ~~~~  304 (352)
T PF02259_consen  301 FNDK  304 (352)
T ss_pred             HHHH
Confidence            5544

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.53  E-value=0.15  Score=46.53  Aligned_cols=84  Identities=14%  Similarity=0.144  Sum_probs=74.5

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          75 NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT  154 (337)
Q Consensus        75 ~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  154 (337)
                      ..+.+.+..|.=.+++.-+++..|+.+.++.+.++|.++..+.-+|.+|.++|.+.-|+..+...++.-|+.+.+..+..
T Consensus       177 ~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~  256 (269)
T COG2912         177 REILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA  256 (269)
T ss_pred             HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence            34567778888889999999999999999999999999999999999999999999999999999999999987766655


Q ss_pred             HHHH
Q psy5660         155 SCIN  158 (337)
Q Consensus       155 ~~~~  158 (337)
                      +..+
T Consensus       257 ~l~~  260 (269)
T COG2912         257 QLLE  260 (269)
T ss_pred             HHHH
Confidence            5543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.48  E-value=0.58  Score=43.24  Aligned_cols=101  Identities=16%  Similarity=0.182  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660          43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF-LKNYRSCLTDCQIALKLKPDYPKVKLRAAQ  121 (337)
Q Consensus        43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~-lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~  121 (337)
                      .|....+..-+.+..+.|...|.+|.+....    ...+|...|..-++ .++...|...++.+++.-|.+...+.....
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~----~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~   78 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRC----TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-----THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            3455667777777799999999999965443    45778877888666 566666999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660         122 CLFHLKKFEDCTHLCDELLKENPTDS  147 (337)
Q Consensus       122 a~~~lg~~~eA~~~~~~al~l~P~~~  147 (337)
                      -+..+++.+.|...+++++..-|...
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISSLPKEK  104 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcCchh
Confidence            99999999999999999998876655

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.46  E-value=0.15  Score=41.92  Aligned_cols=63  Identities=8%  Similarity=-0.005  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL  106 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al  106 (337)
                      ....+...+..+...|++..|+..+++++..+|.    +..+|..+-.++...|+...|+..|++..
T Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~----~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   61 YLDALERLAEALLEAGDYEEALRLLQRALALDPY----DEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            3456667777888899999999999999999998    56889999999999999999999887764

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN03077 Protein ECB2; Provisional

Probab=95.42  E-value=0.16  Score=54.30  Aligned_cols=112  Identities=8%  Similarity=-0.060  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660          44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCL  123 (337)
Q Consensus        44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~  123 (337)
                      |...-..+.+.|++++|..+|....+..+-.+  +...|..+..++.+.|++++|...+++. .+.|+ ...|-.+-.++
T Consensus       592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P--~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac  667 (857)
T PLN03077        592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITP--NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNAC  667 (857)
T ss_pred             HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHH
Confidence            44445668888999999999999885433222  3467888999999999999999988874 45664 56666666677


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         124 FHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       124 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ..-|+.+.|....+++++++|++.....++..+...
T Consensus       668 ~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~  703 (857)
T PLN03077        668 RIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD  703 (857)
T ss_pred             HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence            888999999999999999999999888888877655

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.28  E-value=0.12  Score=39.28  Aligned_cols=59  Identities=15%  Similarity=0.164  Sum_probs=45.7

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHH
Q psy5660          98 CLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD--STVIDLRTSC  156 (337)
Q Consensus        98 Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~--~~~~~~l~~~  156 (337)
                      .+..+++++..+|++..+.+.+|.++...|++++|++.+-.+++.+++.  ..++..+-.+
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~   67 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDI   67 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHH
Confidence            4567888999999999999999999999999999999999999988765  4454444443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.15  E-value=0.24  Score=48.76  Aligned_cols=104  Identities=18%  Similarity=0.140  Sum_probs=69.3

Q ss_pred             HHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHH-----HHHccCHHHHHHHHHHHHhhCC-------------
Q psy5660          49 NFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAAS-----NFFLKNYRSCLTDCQIALKLKP-------------  110 (337)
Q Consensus        49 n~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~-----~~~lg~~~~Al~d~~~Al~l~P-------------  110 (337)
                      ..+.++.+.+.-++.-.+|++++|+    .+.+|.-+|.=     .....-|++|++..+.++..+.             
T Consensus       176 q~AWRERnp~aRIkaA~eALei~pd----CAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~  251 (539)
T PF04184_consen  176 QKAWRERNPQARIKAAKEALEINPD----CADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH  251 (539)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhhhh----hhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh
Confidence            3457888999999999999999998    66666655541     1122224444444444433321             


Q ss_pred             ---CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHH
Q psy5660         111 ---DY--PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD--STVIDLRTSC  156 (337)
Q Consensus       111 ---~~--~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~--~~~~~~l~~~  156 (337)
                         .+  +-+-+|+|.|+.++|+.+||++.++..++..|..  ..+...+-.+
T Consensus       252 ~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~  304 (539)
T PF04184_consen  252 RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEA  304 (539)
T ss_pred             ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHH
Confidence               11  2344688999999999999999999999988763  3444444443

The molecular function of this protein is uncertain.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.99  E-value=0.11  Score=39.60  Aligned_cols=58  Identities=17%  Similarity=0.157  Sum_probs=34.5

Q ss_pred             HHHhCcHHHHHHHHHHHHccccCCch-----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q psy5660          51 NFKCNKYRNAIINYTEGLKIKCADND-----VNAQLYNNRAASNFFLKNYRSCLTDCQIALKL  108 (337)
Q Consensus        51 ~~k~g~y~~Ai~~Y~~ai~~~p~~~~-----~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l  108 (337)
                      ..+.|+|..|++.+.+..+.......     ....+..|+|.++...|++++|+..+++|+++
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            35667777777777666665332111     13445556666666666666666666666655

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.94  E-value=0.73  Score=45.85  Aligned_cols=99  Identities=14%  Similarity=0.088  Sum_probs=80.0

Q ss_pred             hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhcCCH
Q psy5660          54 CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY----PKVKLRAAQCLFHLKKF  129 (337)
Q Consensus        54 ~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~----~ka~~r~a~a~~~lg~~  129 (337)
                      ......|.+......+.-|+    .+......|..+...|+.+.|+..+++|+......    .-+++.+|.++..+.+|
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~----s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w  321 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPN----SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDW  321 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchH
Confidence            34567788888888888887    56888889999999999999999999998644332    35678999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         130 EDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       130 ~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      ++|..++.++.+.+.-++.......-+
T Consensus       322 ~~A~~~f~~L~~~s~WSka~Y~Y~~a~  348 (468)
T PF10300_consen  322 EEAAEYFLRLLKESKWSKAFYAYLAAA  348 (468)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            999999999999766555555444433

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=94.81  E-value=1.7  Score=41.58  Aligned_cols=114  Identities=15%  Similarity=0.135  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      -..+|.--+...-..|+++.|=.+..++-+..+++   .-..+..|+...+..|+|..|..-..++++..|.++.++.-.
T Consensus       117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~---~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa  193 (400)
T COG3071         117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD---TLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLA  193 (400)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc---hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHH
Confidence            34556666677778899999999999999985554   335566688899999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENP-TDSTVIDLRTSC  156 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P-~~~~~~~~l~~~  156 (337)
                      .++|..+|+|.+......+.-+-.- ++.++..+..++
T Consensus       194 ~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a  231 (400)
T COG3071         194 LRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQA  231 (400)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHH
Confidence            9999999999999998887765432 233444443333

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.76  E-value=0.072  Score=33.31  Aligned_cols=29  Identities=24%  Similarity=0.174  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q psy5660          80 QLYNNRAASNFFLKNYRSCLTDCQIALKL  108 (337)
Q Consensus        80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l  108 (337)
                      .++.|+|.++..+|++++|+..+++|+.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45666777777777777777766666654

>KOG2610|consensus

Probab=94.72  E-value=0.46  Score=44.68  Aligned_cols=101  Identities=16%  Similarity=0.056  Sum_probs=67.1

Q ss_pred             HHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCC---HHHHHHHHH
Q psy5660          46 DEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL-KPDY---PKVKLRAAQ  121 (337)
Q Consensus        46 ~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l-~P~~---~ka~~r~a~  121 (337)
                      ..+-..+..|++.+|...+.+.++--|.|-    .++..--.+|+.+|+...-....++.+-. +|+-   .-.+-..|-
T Consensus       108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDl----la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF  183 (491)
T KOG2610|consen  108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDL----LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF  183 (491)
T ss_pred             hhHHHhhccccccHHHHHHHHHHHhCchhh----hhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence            344556778888888889999998888743    22332334556677777777777777665 4443   333334566


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660         122 CLFHLKKFEDCTHLCDELLKENPTDSTVI  150 (337)
Q Consensus       122 a~~~lg~~~eA~~~~~~al~l~P~~~~~~  150 (337)
                      ++.+.|-|++|.+..+++++++|.+.=+.
T Consensus       184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~  212 (491)
T KOG2610|consen  184 GLEECGIYDDAEKQADRALQINRFDCWAS  212 (491)
T ss_pred             hHHHhccchhHHHHHHhhccCCCcchHHH
Confidence            77777888888888888888877764333

>KOG3364|consensus

Probab=94.72  E-value=0.23  Score=40.57  Aligned_cols=75  Identities=13%  Similarity=0.103  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHhCc---HHHHHHHHHHHHc-cccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660          40 LATTYKDEGNFNFKCNK---YRNAIINYTEGLK-IKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV  115 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~---y~~Ai~~Y~~ai~-~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka  115 (337)
                      ..+...+.+..+.+..+   -++-+.+++..+. ..|..   .-.+.+-+|..|+++|+|++++.+++..|+.+|+|..|
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~---rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa  107 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER---RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA  107 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc---chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence            34555667777766654   5778889998886 33432   33555559999999999999999999999999999877


Q ss_pred             HH
Q psy5660         116 KL  117 (337)
Q Consensus       116 ~~  117 (337)
                      .-
T Consensus       108 ~~  109 (149)
T KOG3364|consen  108 LE  109 (149)
T ss_pred             HH
Confidence            53

>KOG1915|consensus

Probab=94.58  E-value=0.67  Score=45.47  Aligned_cols=98  Identities=10%  Similarity=0.103  Sum_probs=87.5

Q ss_pred             HHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q psy5660          46 DEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFH  125 (337)
Q Consensus        46 ~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~  125 (337)
                      ..|.--..++++..|...|.+||..+..    +..+|..-|.+-++.++...|.+.+++|+.+-|.-.+-||.....-..
T Consensus        78 kYaqwEesq~e~~RARSv~ERALdvd~r----~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~  153 (677)
T KOG1915|consen   78 KYAQWEESQKEIQRARSVFERALDVDYR----NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM  153 (677)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            3444445577899999999999999877    779999999999999999999999999999999999999998888899


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCH
Q psy5660         126 LKKFEDCTHLCDELLKENPTDS  147 (337)
Q Consensus       126 lg~~~eA~~~~~~al~l~P~~~  147 (337)
                      +|+...|.+.|.+=++..|+..
T Consensus       154 LgNi~gaRqiferW~~w~P~eq  175 (677)
T KOG1915|consen  154 LGNIAGARQIFERWMEWEPDEQ  175 (677)
T ss_pred             hcccHHHHHHHHHHHcCCCcHH
Confidence            9999999999999999999854

>KOG1585|consensus

Probab=94.49  E-value=3.6  Score=37.23  Aligned_cols=118  Identities=19%  Similarity=0.153  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchH--HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----CCCH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDV--NAQLYNNRAASNFFLKNYRSCLTDCQIALKLK-----PDYP  113 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~--~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~-----P~~~  113 (337)
                      |..|-.-++.+-..++|++|-.+..+|++-..++..+  -+-.|-..|.....+..+.++...+++|..+-     |+-.
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA  110 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA  110 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence            3444444444445688999999999999765554433  23345555666667899999999999998873     3333


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHH
Q psy5660         114 KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD---STVIDLRTSCIN  158 (337)
Q Consensus       114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~---~~~~~~l~~~~~  158 (337)
                      -.-...|--.++..+.++|++.|++++.+--.+   ..+..+++++.+
T Consensus       111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr  158 (308)
T KOG1585|consen  111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR  158 (308)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence            222333333466779999999999999874333   334444544443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.46  E-value=1.4  Score=37.03  Aligned_cols=72  Identities=17%  Similarity=0.203  Sum_probs=35.1

Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660          87 ASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus        87 ~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      .+-++.++...+...+...--+.|.+...-.--|..++..|+|.+|+..++.+..-.|..+....++.-|..
T Consensus        18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            333344444444444444444455555555555555555555555555555544444444444444444443

>KOG1915|consensus

Probab=94.34  E-value=1.2  Score=43.89  Aligned_cols=106  Identities=13%  Similarity=0.098  Sum_probs=69.9

Q ss_pred             HhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q psy5660          53 KCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDC  132 (337)
Q Consensus        53 k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA  132 (337)
                      ...+.+.+.+.|+.+|++-|...-..+-+|.--|.-..+..|...|...+-.||...|++ |.+-.....-.++++++.+
T Consensus       378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRc  456 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRC  456 (677)
T ss_pred             HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHH
Confidence            346677788888888888877655566677766666667777777777777777777753 2222223344566777777


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         133 THLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       133 ~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ...|.+-|+.+|.|-.+....+.+...
T Consensus       457 RkLYEkfle~~Pe~c~~W~kyaElE~~  483 (677)
T KOG1915|consen  457 RKLYEKFLEFSPENCYAWSKYAELETS  483 (677)
T ss_pred             HHHHHHHHhcChHhhHHHHHHHHHHHH
Confidence            777777777777776555555555444

>KOG2796|consensus

Probab=94.13  E-value=0.99  Score=41.15  Aligned_cols=109  Identities=15%  Similarity=0.178  Sum_probs=86.6

Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH----HhhCC--CCHHHHHHHH
Q psy5660          47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA----LKLKP--DYPKVKLRAA  120 (337)
Q Consensus        47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A----l~l~P--~~~ka~~r~a  120 (337)
                      ..+.+...|.|.-.+..|.+.|+.+|.   ....+.+.++.+.++.|+...|-..++++    =+++.  .+.-.+.+++
T Consensus       183 ~~~~llG~kEy~iS~d~~~~vi~~~~e---~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  183 MANCLLGMKEYVLSVDAYHSVIKYYPE---QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHhcchhhhhhHHHHHHHHHhCCc---ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            456667778999999999999997643   25588888999999999999999999844    33433  3456667778


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      .++...+++.+|...+.+++..||.++.+.+..+-|..
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll  297 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL  297 (366)
T ss_pred             hheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence            88888899999999999999999998877666655544

>KOG2471|consensus

Probab=94.12  E-value=0.06  Score=52.60  Aligned_cols=85  Identities=15%  Similarity=0.191  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHcc---------ccCC-----chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKI---------KCAD-----NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK  107 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~---------~p~~-----~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~  107 (337)
                      ..+.+.|-++|+.|.|..++.+|.+|+.-         .|..     ..-...+.+|.|..++..|+.-.|..++.+|+.
T Consensus       284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~  363 (696)
T KOG2471|consen  284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH  363 (696)
T ss_pred             eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence            34468888999999999999999999961         1110     011457888999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhc
Q psy5660         108 LKPDYPKVKLRAAQCLFHL  126 (337)
Q Consensus       108 l~P~~~ka~~r~a~a~~~l  126 (337)
                      .--.|+..|.|+|.|+++.
T Consensus       364 vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  364 VFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHhcCcHHHHHHHHHHHHH
Confidence            9999999999999998753

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.04  E-value=0.69  Score=43.44  Aligned_cols=106  Identities=18%  Similarity=0.079  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC------------------------------CchHHHHHHHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA------------------------------DNDVNAQLYNNRAASN   89 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~------------------------------~~~~~~~~~~nra~~~   89 (337)
                      .+....+.+..+...|+-.+|+......+.....                              .....+.++.-+|.-.
T Consensus       183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~  262 (352)
T PF02259_consen  183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL  262 (352)
T ss_pred             CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence            4566777888888889999999988888872111                              1234556666666666


Q ss_pred             HHc------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHhhCCC
Q psy5660          90 FFL------KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKF-----------------EDCTHLCDELLKENPT  145 (337)
Q Consensus        90 ~~l------g~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~-----------------~eA~~~~~~al~l~P~  145 (337)
                      ..+      +..+.++..+..|++++|.+.++++..|..+..+=..                 ..|+..|-+++...+.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            666      7888899999999999999999999999887665222                 3367777777777665

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.94  E-value=2.3  Score=39.14  Aligned_cols=109  Identities=17%  Similarity=0.166  Sum_probs=84.2

Q ss_pred             CChHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHccc----c------CCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660          35 NTPEELATTYKDEGNFNFKCN-KYRNAIINYTEGLKIK----C------ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ  103 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g-~y~~Ai~~Y~~ai~~~----p------~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~  103 (337)
                      ...++.+..+.+-|...++.+ +|+.|+...++|++.-    .      +..++...++..++.+++..+.++.... |.
T Consensus        29 ~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~  107 (278)
T PF08631_consen   29 DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-AL  107 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HH
Confidence            556789999999999999999 9999999999999872    2      1224677888889999999888765444 44


Q ss_pred             HHHh----hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q psy5660         104 IALK----LKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP  144 (337)
Q Consensus       104 ~Al~----l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P  144 (337)
                      .+++    --|+.+..++-.-.++...++.+++.+.+.+++.--+
T Consensus       108 ~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  108 NALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            4433    3577777776666666668999999999999987543

It is also involved in sporulation [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=93.91  E-value=1.3  Score=38.51  Aligned_cols=93  Identities=20%  Similarity=0.135  Sum_probs=75.0

Q ss_pred             HHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHhcC
Q psy5660          49 NFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK-LKPDYPKVKLRAAQCLFHLK  127 (337)
Q Consensus        49 n~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~-l~P~~~ka~~r~a~a~~~lg  127 (337)
                      ......=+.+.++.--++.++..|+.     .-...+|.+...+|++.+|...|++|+. +-..+...+..+|++.+.++
T Consensus        64 ~a~~q~ldP~R~~Rea~~~~~~ApTv-----qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~  138 (251)
T COG4700          64 MALQQKLDPERHLREATEELAIAPTV-----QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ  138 (251)
T ss_pred             HHHHHhcChhHHHHHHHHHHhhchhH-----HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc
Confidence            33333445666777777778877752     4566789999999999999999999986 34567788889999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCC
Q psy5660         128 KFEDCTHLCDELLKENPTD  146 (337)
Q Consensus       128 ~~~eA~~~~~~al~l~P~~  146 (337)
                      ++.+|...+++..+.+|..
T Consensus       139 ~~A~a~~tLe~l~e~~pa~  157 (251)
T COG4700         139 EFAAAQQTLEDLMEYNPAF  157 (251)
T ss_pred             cHHHHHHHHHHHhhcCCcc
Confidence            9999999999999988764

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=93.85  E-value=0.75  Score=34.85  Aligned_cols=66  Identities=15%  Similarity=0.087  Sum_probs=46.2

Q ss_pred             HHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCH
Q psy5660          60 AIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY--PKVKLRAAQCLFHLKKF  129 (337)
Q Consensus        60 Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~--~ka~~r~a~a~~~lg~~  129 (337)
                      .+..++++++.+|+|    ..+.+.+|.+++..|++..|++-+-.+++.++++  ..+.-.+-.++..+|.-
T Consensus         7 ~~~al~~~~a~~P~D----~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~   74 (90)
T PF14561_consen    7 DIAALEAALAANPDD----LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG   74 (90)
T ss_dssp             HHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred             cHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence            356678888888884    4777889999999999999999999999988876  34444444455555443

>KOG0686|consensus

Probab=93.77  E-value=0.58  Score=44.94  Aligned_cols=107  Identities=17%  Similarity=0.194  Sum_probs=82.5

Q ss_pred             CCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC---
Q psy5660          33 LENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK---  109 (337)
Q Consensus        33 ~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~---  109 (337)
                      ++...+..-..+-+.|..|...|+...|+++|.++-. -|+...-....+.|.=.+-.-+|||........+|...-   
T Consensus       142 ~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~Rd-YCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~  220 (466)
T KOG0686|consen  142 DNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARD-YCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDAN  220 (466)
T ss_pred             cchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhh-hhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhh
Confidence            3456667778889999999999999999999999544 454444355677777778888999999999888887651   


Q ss_pred             -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy5660         110 -----PDYPKVKLRAAQCLFHLKKFEDCTHLCDELL  140 (337)
Q Consensus       110 -----P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al  140 (337)
                           --..+.....|.+.+.+++|..|.+++-.+-
T Consensus       221 ~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  221 ENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence                 1134666778888899999999998875543

>KOG2610|consensus

Probab=93.73  E-value=0.86  Score=42.90  Aligned_cols=93  Identities=9%  Similarity=-0.117  Sum_probs=71.0

Q ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHcc-ccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660          45 KDEGNFNFKCNKYRNAIINYTEGLKI-KCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCL  123 (337)
Q Consensus        45 k~~Gn~~~k~g~y~~Ai~~Y~~ai~~-~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~  123 (337)
                      +---..+|-.|+...-...+.+.|-. +++-| ..+-+..-.|-+....|-|++|...+++|+++||.+..|....|.++
T Consensus       141 kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp-~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl  219 (491)
T KOG2610|consen  141 KFSHDAHFYNGNQIGKKNAIEKIIPKWNADLP-CYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVL  219 (491)
T ss_pred             hhhhhHHHhccchhhhhhHHHHhccccCCCCc-HHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHH
Confidence            33344556667777777777777766 55422 23444555788899999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHH
Q psy5660         124 FHLKKFEDCTHLCDE  138 (337)
Q Consensus       124 ~~lg~~~eA~~~~~~  138 (337)
                      ...|++.++.++..+
T Consensus       220 em~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  220 EMNGRHKEGKEFMYK  234 (491)
T ss_pred             HhcchhhhHHHHHHh
Confidence            999999888887543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.69  E-value=3.1  Score=38.33  Aligned_cols=106  Identities=15%  Similarity=0.057  Sum_probs=76.4

Q ss_pred             HHHhCcHHHHHHHHHHHHccc----cCCchHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhh----CC---C-------
Q psy5660          51 NFKCNKYRNAIINYTEGLKIK----CADNDVNAQLYNNRAASNFFLK-NYRSCLTDCQIALKL----KP---D-------  111 (337)
Q Consensus        51 ~~k~g~y~~Ai~~Y~~ai~~~----p~~~~~~~~~~~nra~~~~~lg-~~~~Al~d~~~Al~l----~P---~-------  111 (337)
                      ..++|+++.|..+|.++-...    |+.....+..++|.|...+..+ ++..|+...++|.++    .+   .       
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            467899999999999987654    4444568899999999999999 999999999999887    22   1       


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHH---HHHHHHhhCCCCHHHHHHHHHH
Q psy5660         112 YPKVKLRAAQCLFHLKKFEDCTH---LCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       112 ~~ka~~r~a~a~~~lg~~~eA~~---~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      ..+.+..++.+++..+.++...+   ..+.+-.-.|+.+...-+.-++
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~i  130 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEI  130 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            13566778999999887765444   3333333346655555443333

It is also involved in sporulation [].

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.34  E-value=0.45  Score=36.22  Aligned_cols=57  Identities=11%  Similarity=0.132  Sum_probs=47.0

Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660          87 ASNFFLKNYRSCLTDCQIALKLKPD---------YPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN  143 (337)
Q Consensus        87 ~~~~~lg~~~~Al~d~~~Al~l~P~---------~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~  143 (337)
                      .-.++.|+|..|++.+.+.+..-..         ..-+.+++|.++...|++++|+..++.++++.
T Consensus         6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            3456889999999999888776322         23577889999999999999999999999874

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.16  E-value=0.23  Score=30.86  Aligned_cols=29  Identities=17%  Similarity=0.173  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         114 KVKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                      .++.++|.++..+|++++|+.++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            56789999999999999999999999976

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.13  E-value=0.82  Score=40.54  Aligned_cols=88  Identities=16%  Similarity=-0.006  Sum_probs=59.6

Q ss_pred             CChHHHHHHHHHHHHHHHHhCc-------HHHHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660          35 NTPEELATTYKDEGNFNFKCNK-------YRNAIINYTEGLKIKCA--DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA  105 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~-------y~~Ai~~Y~~ai~~~p~--~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A  105 (337)
                      ..+...|..+...+..+-..|+       +..|+..|.+|++....  .......+.+-+|..+.++|++++|+..+.++
T Consensus       112 ~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~v  191 (214)
T PF09986_consen  112 EKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRV  191 (214)
T ss_pred             CCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3444555555555555544444       68888899988876432  22224567777999999999999999999999


Q ss_pred             HhhCCCCH-HHHHHHHHH
Q psy5660         106 LKLKPDYP-KVKLRAAQC  122 (337)
Q Consensus       106 l~l~P~~~-ka~~r~a~a  122 (337)
                      +...-.+. ..+..+|+-
T Consensus       192 i~~~~~s~~~~l~~~AR~  209 (214)
T PF09986_consen  192 IGSKKASKEPKLKDMARD  209 (214)
T ss_pred             HcCCCCCCcHHHHHHHHH
Confidence            97654333 355555543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=93.13  E-value=2.4  Score=39.07  Aligned_cols=109  Identities=12%  Similarity=0.070  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHH-hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHH
Q psy5660          42 TTYKDEGNFNFK-CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP---KVKL  117 (337)
Q Consensus        42 ~~~k~~Gn~~~k-~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~---ka~~  117 (337)
                      ..|...|..-+. .++.+.|...|..|++.-|.+    ..+|..-..-..++++...|...+++++..-|...   ..|-
T Consensus        36 ~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~----~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~  111 (280)
T PF05843_consen   36 HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD----PDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWK  111 (280)
T ss_dssp             HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence            446667777666 567777999999999999984    46666666677789999999999999998877654   4555


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660         118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT  154 (337)
Q Consensus       118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  154 (337)
                      +...--...|+++...+..+++.+.-|++..+.....
T Consensus       112 ~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~  148 (280)
T PF05843_consen  112 KFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD  148 (280)
T ss_dssp             HHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            6667777889999999999999999988766655443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.04  E-value=4.7  Score=38.83  Aligned_cols=78  Identities=12%  Similarity=0.014  Sum_probs=40.9

Q ss_pred             HHHHHHHH---hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhhCCCCH
Q psy5660          46 DEGNFNFK---CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL---------KNYRSCLTDCQIALKLKPDYP  113 (337)
Q Consensus        46 ~~Gn~~~k---~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l---------g~~~~Al~d~~~Al~l~P~~~  113 (337)
                      ..|-.+-+   .|+.++|+..+..++......   .+..|+-+|.+|-.+         ...++|+..|.++.+++|+. 
T Consensus       184 ~yafALnRrn~~gdre~Al~il~~~l~~~~~~---~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-  259 (374)
T PF13281_consen  184 QYAFALNRRNKPGDREKALQILLPVLESDENP---DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-  259 (374)
T ss_pred             HHHHHHhhcccCCCHHHHHHHHHHHHhccCCC---ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-
Confidence            44444555   677777777777754433221   234444445444322         23667777777777777543 


Q ss_pred             HHHHHHHHHHHhcC
Q psy5660         114 KVKLRAAQCLFHLK  127 (337)
Q Consensus       114 ka~~r~a~a~~~lg  127 (337)
                      -.=.+.|.++...|
T Consensus       260 Y~GIN~AtLL~~~g  273 (374)
T PF13281_consen  260 YSGINAATLLMLAG  273 (374)
T ss_pred             cchHHHHHHHHHcC
Confidence            22234444444444

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.00  E-value=3.7  Score=40.21  Aligned_cols=49  Identities=16%  Similarity=0.335  Sum_probs=45.1

Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5660          89 NFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDE  138 (337)
Q Consensus        89 ~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~  138 (337)
                      .+..|+|++|...+.-..++.| .+.+|..+|.|++...+|++|-.++..
T Consensus       472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            4468999999999999999999 899999999999999999999998764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=92.95  E-value=2.9  Score=40.23  Aligned_cols=93  Identities=20%  Similarity=0.181  Sum_probs=70.0

Q ss_pred             HHhCcHHHHHHHHHHHHcccc---CCc-hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q psy5660          52 FKCNKYRNAIINYTEGLKIKC---ADN-DVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLK  127 (337)
Q Consensus        52 ~k~g~y~~Ai~~Y~~ai~~~p---~~~-~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg  127 (337)
                      ...|+|+.|++..+...+..-   +.. ...+.++.-.|...+ --+..+|.++...++++.|+.+.+-...|.+++..|
T Consensus       199 ~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~  277 (531)
T COG3898         199 CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRDG  277 (531)
T ss_pred             HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhcc
Confidence            456778888877776655432   111 124445554444433 245889999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCC
Q psy5660         128 KFEDCTHLCDELLKENPT  145 (337)
Q Consensus       128 ~~~eA~~~~~~al~l~P~  145 (337)
                      +...+-..++.+-+.+|.
T Consensus       278 ~~rKg~~ilE~aWK~ePH  295 (531)
T COG3898         278 NLRKGSKILETAWKAEPH  295 (531)
T ss_pred             chhhhhhHHHHHHhcCCC
Confidence            999999999999998864

>KOG2053|consensus

Probab=92.90  E-value=0.9  Score=47.60  Aligned_cols=97  Identities=12%  Similarity=0.017  Sum_probs=75.1

Q ss_pred             HHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q psy5660          46 DEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFH  125 (337)
Q Consensus        46 ~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~  125 (337)
                      -.|-.+++.|++++|..+.+..-...++|.    ..+.-+-.||..++.+++|...|++|++-+|+ .+-++.+-.||.+
T Consensus        48 LkaLsl~r~gk~~ea~~~Le~~~~~~~~D~----~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR  122 (932)
T KOG2053|consen   48 LKALSLFRLGKGDEALKLLEALYGLKGTDD----LTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR  122 (932)
T ss_pred             HHHHHHHHhcCchhHHHHHhhhccCCCCch----HHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH
Confidence            456778999999999976665555555533    44455778999999999999999999999999 8888888888888


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCH
Q psy5660         126 LKKFEDCTHLCDELLKENPTDS  147 (337)
Q Consensus       126 lg~~~eA~~~~~~al~l~P~~~  147 (337)
                      .+.|.+--+.--+..+..|+++
T Consensus       123 ~~~yk~qQkaa~~LyK~~pk~~  144 (932)
T KOG2053|consen  123 EKSYKKQQKAALQLYKNFPKRA  144 (932)
T ss_pred             HHHHHHHHHHHHHHHHhCCccc
Confidence            8888766655555555666653

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.90  E-value=0.18  Score=31.78  Aligned_cols=28  Identities=18%  Similarity=0.351  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhh
Q psy5660          81 LYNNRAASNFFLKNYRSCLTDCQIALKL  108 (337)
Q Consensus        81 ~~~nra~~~~~lg~~~~Al~d~~~Al~l  108 (337)
                      +|..+|.+.+..+||.+|+.|+.+||++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3444555555555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG4814|consensus

Probab=92.63  E-value=1.5  Score=44.44  Aligned_cols=74  Identities=16%  Similarity=0.240  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPD------YPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLR  153 (337)
Q Consensus        80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~------~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l  153 (337)
                      .++-|-|.-+++..+|..++..|...++.-|.      ..|....++.||+.+.+++.|.++++.|-+.+|.+.-.+...
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            45567899999999999999999999987664      468888899999999999999999999999999987554443

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=92.54  E-value=2.4  Score=42.63  Aligned_cols=106  Identities=15%  Similarity=0.007  Sum_probs=83.4

Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHH-HHHHHHhhCCCCHHHHHHH------
Q psy5660          47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT-DCQIALKLKPDYPKVKLRA------  119 (337)
Q Consensus        47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~-d~~~Al~l~P~~~ka~~r~------  119 (337)
                      +.-.....+....|+.....++..+|.    ++.++.|+|.+....|+...++. .+..|....|+|......+      
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  148 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPE----NCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQL  148 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcc----cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHH
Confidence            444445556777888888899999988    77999999999888877666554 5555999999998777666      


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      |+.+..+|+..++.....++..+.|.+..+...+-..
T Consensus       149 ~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         149 GRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            8888899999999999999999999986665544433

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=92.54  E-value=1.8  Score=46.55  Aligned_cols=113  Identities=12%  Similarity=0.050  Sum_probs=85.3

Q ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc----c---CHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660          45 KDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL----K---NYRSCLTDCQIALKLKPDYPKVKL  117 (337)
Q Consensus        45 k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l----g---~~~~Al~d~~~Al~l~P~~~ka~~  117 (337)
                      ..-.++....+.|++|+..|++.-..=|.-.+ --.+.+..|.+.+..    |   .+.+|+..+++ |.-.|.-+--|.
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  556 (932)
T PRK13184        479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKE-GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYL  556 (932)
T ss_pred             ccCcHHHHhhHHHHHHHHHHHHHhhcCCCccc-chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHH
Confidence            34456677888999999999998887776332 234555566666543    2   36677776665 334566778889


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ..|.+|..+|+|+|-+++|.-|++--|+++++-.+...+.-+
T Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  598 (932)
T PRK13184        557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYR  598 (932)
T ss_pred             hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence            999999999999999999999999999999888777766544

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=92.50  E-value=0.23  Score=44.23  Aligned_cols=60  Identities=12%  Similarity=0.065  Sum_probs=53.7

Q ss_pred             HHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q psy5660          50 FNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP  113 (337)
Q Consensus        50 ~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~  113 (337)
                      ...+.+++..|.+.|.+|+++.|.    ...-|+..|....+-|+++.|...+++.++++|.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~----w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPE----WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCch----hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            356778999999999999999998    568899999999999999999999999999999753

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=92.49  E-value=6.1  Score=40.72  Aligned_cols=127  Identities=10%  Similarity=0.008  Sum_probs=92.1

Q ss_pred             hHHHhhccccCCCCCChHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHccCHHH
Q psy5660          21 LVEGLQQLKYDPLENTPEELATTYKDEGNFNFK-CNKYRNAIINYTEGLKIKCA--DNDVNAQLYNNRAASNFFLKNYRS   97 (337)
Q Consensus        21 ~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k-~g~y~~Ai~~Y~~ai~~~p~--~~~~~~~~~~nra~~~~~lg~~~~   97 (337)
                      .+.+|+++.-+. .-+|...|..+...|+.++. ..+++.|..+.++|+.+...  -.++.-.+.+-++.++.+.+... 
T Consensus        40 ai~CL~~~~~~~-~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-  117 (608)
T PF10345_consen   40 AIKCLEAVLKQF-KLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-  117 (608)
T ss_pred             HHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence            366777766443 46899999999999999995 57899999999999988643  22334444555677777766666 


Q ss_pred             HHHHHHHHHhhCCC----CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhC--CCCHHH
Q psy5660          98 CLTDCQIALKLKPD----YPKVKLRAAQCLF--HLKKFEDCTHLCDELLKEN--PTDSTV  149 (337)
Q Consensus        98 Al~d~~~Al~l~P~----~~ka~~r~a~a~~--~lg~~~eA~~~~~~al~l~--P~~~~~  149 (337)
                      |+..++++|+.--.    .+...+|.-++..  ..+++..|++.++.+..+.  .+++.+
T Consensus       118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~  177 (608)
T PF10345_consen  118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV  177 (608)
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence            99999999987544    4455566654432  3379999999999999875  355444

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1585|consensus

Probab=92.46  E-value=1  Score=40.60  Aligned_cols=93  Identities=14%  Similarity=0.101  Sum_probs=44.7

Q ss_pred             HHHHhCcHHHHHHHHHHHHccccCCc--hHHHHHHHHHHHHHHHccCHHHHHHHHHH----HHhhC--CCCHHHHHHHHH
Q psy5660          50 FNFKCNKYRNAIINYTEGLKIKCADN--DVNAQLYNNRAASNFFLKNYRSCLTDCQI----ALKLK--PDYPKVKLRAAQ  121 (337)
Q Consensus        50 ~~~k~g~y~~Ai~~Y~~ai~~~p~~~--~~~~~~~~nra~~~~~lg~~~~Al~d~~~----Al~l~--P~~~ka~~r~a~  121 (337)
                      ...+..+.++|++.|++++.+--.+.  .....++...+.++.++..|.+|...+.+    +++.+  |.-.|++.....
T Consensus       119 k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~il  198 (308)
T KOG1585|consen  119 KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAIL  198 (308)
T ss_pred             HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHH
Confidence            34444555666666666655432211  12334445555555555555555444433    22222  222344444444


Q ss_pred             HHHhcCCHHHHHHHHHHHHhh
Q psy5660         122 CLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       122 a~~~lg~~~eA~~~~~~al~l  142 (337)
                      +++-..+|..|..+++..-++
T Consensus       199 v~L~~~Dyv~aekc~r~~~qi  219 (308)
T KOG1585|consen  199 VYLYAHDYVQAEKCYRDCSQI  219 (308)
T ss_pred             HHhhHHHHHHHHHHhcchhcC
Confidence            455555666666666655554

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=92.33  E-value=2.1  Score=41.11  Aligned_cols=124  Identities=17%  Similarity=0.145  Sum_probs=91.1

Q ss_pred             CChhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHH
Q psy5660          18 MSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRS   97 (337)
Q Consensus        18 ~~~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~   97 (337)
                      .+..-.|++++++.|      ..+-.-.--+..+|+.|+..++-.....+.+..|.-         .++..|....--+.
T Consensus       246 ~~Ar~~A~~a~KL~p------dlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP---------~ia~lY~~ar~gdt  310 (531)
T COG3898         246 ASARDDALEANKLAP------DLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP---------DIALLYVRARSGDT  310 (531)
T ss_pred             HHHHHHHHHHhhcCC------ccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh---------HHHHHHHHhcCCCc
Confidence            334556788888887      555555566778899999999999999999988852         14445555555556


Q ss_pred             HHHHHHHHH---hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660          98 CLTDCQIAL---KLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus        98 Al~d~~~Al---~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      +++-++++-   .+.|+|....+..+.+.+.-|+|..|..-.+.+....|... +.-++..+.
T Consensus       311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIe  372 (531)
T COG3898         311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIE  372 (531)
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHH
Confidence            666666554   45799999999999999999999999999999999888744 334444443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.28  E-value=1  Score=41.60  Aligned_cols=66  Identities=11%  Similarity=0.053  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660          77 VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus        77 ~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                      ....++..++..+...|+++.++...++.+.++|.+-++|.++-.+|+..|+...|+..|+++-+.
T Consensus       151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            355677778888889999999999999999999999999999999999999999999999988764

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.91  E-value=6.9  Score=32.98  Aligned_cols=114  Identities=14%  Similarity=0.090  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVK  116 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~  116 (337)
                      +.+....+.+..+...+.++..++...+...--+.|.    ...+-.--|..++..|+|.+|+..++.+..-.|..+-+-
T Consensus         6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~----~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~k   81 (160)
T PF09613_consen    6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE----FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAK   81 (160)
T ss_pred             cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHH
Confidence            3467788899999999999999999999888888998    456667788999999999999999999988889888777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         117 LRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       117 ~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      -.+|.|+..+|+...=.. .+.+++.. .++....+....
T Consensus        82 ALlA~CL~~~~D~~Wr~~-A~evle~~-~d~~a~~Lv~~L  119 (160)
T PF09613_consen   82 ALLALCLYALGDPSWRRY-ADEVLESG-ADPDARALVRAL  119 (160)
T ss_pred             HHHHHHHHHcCChHHHHH-HHHHHhcC-CChHHHHHHHHH
Confidence            788999999998776443 33344443 345454444433

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.67  E-value=0.33  Score=30.50  Aligned_cols=29  Identities=14%  Similarity=0.086  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         114 KVKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                      .+|.++|.+.+..++|++|+..|+++|++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46889999999999999999999999976

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=91.54  E-value=1.6  Score=39.88  Aligned_cols=78  Identities=18%  Similarity=0.129  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .+.-..+.=+.+...+++..|..+-.+.+.++|.++    .-..-||.+|.++|.+..|+.|....++.-|+...+-.-+
T Consensus       180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp----~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir  255 (269)
T COG2912         180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDP----YEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR  255 (269)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCCh----hhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence            344455666777888999999999999999999965    4455699999999999999999999999999988766544


Q ss_pred             HH
Q psy5660         120 AQ  121 (337)
Q Consensus       120 a~  121 (337)
                      ++
T Consensus       256 ~~  257 (269)
T COG2912         256 AQ  257 (269)
T ss_pred             HH
Confidence            43

>KOG1070|consensus

Probab=91.43  E-value=9.2  Score=42.47  Aligned_cols=86  Identities=13%  Similarity=-0.032  Sum_probs=60.8

Q ss_pred             CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy5660          55 NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTH  134 (337)
Q Consensus        55 g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~  134 (337)
                      |.-+.-.+.|.+|.+.+.     --..|..++-+|.+-+.++.|.+.++..++--..-.+.|...|..++..++-++|..
T Consensus      1511 G~eesl~kVFeRAcqycd-----~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~ 1585 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYCD-----AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARE 1585 (1710)
T ss_pred             CcHHHHHHHHHHHHHhcc-----hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHH
Confidence            333344455555555432     235666677777777888888888888777666667788888888888888888888


Q ss_pred             HHHHHHhhCCC
Q psy5660         135 LCDELLKENPT  145 (337)
Q Consensus       135 ~~~~al~l~P~  145 (337)
                      .+.+||+.-|.
T Consensus      1586 lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1586 LLKRALKSLPK 1596 (1710)
T ss_pred             HHHHHHhhcch
Confidence            88888888777

>KOG0530|consensus

Probab=90.97  E-value=9  Score=35.06  Aligned_cols=102  Identities=12%  Similarity=0.048  Sum_probs=83.8

Q ss_pred             hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHH-H
Q psy5660          54 CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK-NYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFE-D  131 (337)
Q Consensus        54 ~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg-~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~-e  131 (337)
                      ..+-..|+..-+.+|.++|.    +-++|.-|-.|.-.++ +..+-++.....++-+|+|...+..+-.+...+|+.. .
T Consensus        56 ~E~S~RAl~LT~d~i~lNpA----nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~r  131 (318)
T KOG0530|consen   56 NEKSPRALQLTEDAIRLNPA----NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFR  131 (318)
T ss_pred             cccCHHHHHHHHHHHHhCcc----cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccc
Confidence            34567899999999999998    5577777777766654 6778888899999999999999988888888888888 8


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         132 CTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       132 A~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      -+..++.++..|..|--+...+.-+.+.
T Consensus       132 ELef~~~~l~~DaKNYHaWshRqW~~r~  159 (318)
T KOG0530|consen  132 ELEFTKLMLDDDAKNYHAWSHRQWVLRF  159 (318)
T ss_pred             hHHHHHHHHhccccchhhhHHHHHHHHH
Confidence            8899999999988888887777776654

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=90.69  E-value=5.6  Score=40.13  Aligned_cols=95  Identities=12%  Similarity=-0.004  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH-HH
Q psy5660          57 YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCT-HL  135 (337)
Q Consensus        57 y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~-~~  135 (337)
                      -.-|+..|..++..++.++++.....  ++.....++....+.-....++..||.+..++.++|.+....|..-.+. .+
T Consensus        47 ~~~~~~a~~~~~~~~~~~~~llla~~--lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~  124 (620)
T COG3914          47 QALAIYALLLGIAINDVNPELLLAAF--LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI  124 (620)
T ss_pred             hhHHHHHHHccCccCCCCHHHHHHHH--HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence            34478888888888888665433322  6777778899988889999999999999999999999998877665555 55


Q ss_pred             HHHHHhhCCCCHHHHHHH
Q psy5660         136 CDELLKENPTDSTVIDLR  153 (337)
Q Consensus       136 ~~~al~l~P~~~~~~~~l  153 (337)
                      +..+....|.|......+
T Consensus       125 ~~~a~~~~~~~~~~~~~~  142 (620)
T COG3914         125 SEIAEWLSPDNAEFLGHL  142 (620)
T ss_pred             HHHHHhcCcchHHHHhhH
Confidence            556999999998877666

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.44  E-value=8.6  Score=32.04  Aligned_cols=113  Identities=8%  Similarity=0.090  Sum_probs=73.1

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy5660          83 NNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKE  162 (337)
Q Consensus        83 ~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  162 (337)
                      .....+.+..++...+.......--+.|+....-.--|..++..|+|.+|+..++....-.+..+-.+.++..|...+..
T Consensus        14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            33444455577777777777777777888888888888888888999999988888887766667777777777665332


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Q psy5660         163 ILRNERKQAQQVKKEEKEKERVLQIIRERKIKLAT  197 (337)
Q Consensus       163 ~~~~~~k~~~~~~~~~~~~~~l~~al~~rgi~~~~  197 (337)
                      ..=........+.....+...|.+++.  |....|
T Consensus        94 p~Wr~~A~~~le~~~~~~a~~Lv~al~--g~~~~~  126 (153)
T TIGR02561        94 AEWHVHADEVLARDADADAVALVRALL--GAQQPP  126 (153)
T ss_pred             hHHHHHHHHHHHhCCCHhHHHHHHHHh--ccccCC
Confidence            211111112223333445555666666  554333

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.28  E-value=1  Score=27.84  Aligned_cols=33  Identities=12%  Similarity=0.183  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHH--HHHHHhhCCCC
Q psy5660         114 KVKLRAAQCLFHLKKFEDCTHL--CDELLKENPTD  146 (337)
Q Consensus       114 ka~~r~a~a~~~lg~~~eA~~~--~~~al~l~P~~  146 (337)
                      +.++..|-.+...|++++|+..  |+-+..+++.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            3455666666677777777777  33565555543

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG1070|consensus

Probab=90.06  E-value=11  Score=41.80  Aligned_cols=107  Identities=17%  Similarity=-0.000  Sum_probs=86.7

Q ss_pred             HHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHh
Q psy5660          48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD--YPKVKLRAAQCLFH  125 (337)
Q Consensus        48 Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~--~~ka~~r~a~a~~~  125 (337)
                      ...|-+.+++++|.+.|+..++.--+    ....|...|...++..+-..|.....+||+.-|+  +....---|+.-++
T Consensus      1537 ~~iy~k~ek~~~A~ell~~m~KKF~q----~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQ----TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHhcc----hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence            34455566788888888887775443    4578888899998988889999999999999998  77887788999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         126 LKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       126 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      .|+-+.+...++-.|.-.|.-..++..+.....
T Consensus      1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI 1645 (1710)
T ss_pred             cCCchhhHHHHHHHHhhCccchhHHHHHHHHHH
Confidence            999999999999999999987777666555433

>KOG1550|consensus

Probab=90.01  E-value=7.2  Score=39.72  Aligned_cols=101  Identities=14%  Similarity=0.104  Sum_probs=78.5

Q ss_pred             HHHHHHHHh----C-cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660          46 DEGNFNFKC----N-KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK---NYRSCLTDCQIALKLKPDYPKVKL  117 (337)
Q Consensus        46 ~~Gn~~~k~----g-~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg---~~~~Al~d~~~Al~l~P~~~ka~~  117 (337)
                      ..|..|++.    . ++..|+.+|.+|-+....      .+..++|.|+..-.   |++.|...+..|.+.  .+..|++
T Consensus       293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~------~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~  364 (552)
T KOG1550|consen  293 GLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP------DAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIY  364 (552)
T ss_pred             HHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc------hHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHH
Confidence            467777763    3 789999999999998765      66777888888654   788999999998754  5799999


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         118 RAAQCLFH----LKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       118 r~a~a~~~----lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      ++|.|+..    ..+...|..+++++-+.+  +..+...+...
T Consensus       365 ~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~  405 (552)
T KOG1550|consen  365 RLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAF  405 (552)
T ss_pred             HHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHH
Confidence            99999865    248999999999999886  44444444433

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=89.83  E-value=1.3  Score=34.96  Aligned_cols=83  Identities=13%  Similarity=0.143  Sum_probs=58.4

Q ss_pred             hHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHHccccCCchHHHHHHHHHHHHH
Q psy5660          21 LVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNK-----------YRNAIINYTEGLKIKCADNDVNAQLYNNRAASN   89 (337)
Q Consensus        21 ~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~-----------y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~   89 (337)
                      +|+-++.+...  .+.-......+..+|..+++...           ...|+++|+++..+.|.    .+..++++|.-.
T Consensus        15 AL~iied~i~~--h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~----~A~~L~~la~~l   88 (111)
T PF04781_consen   15 ALEIIEDLISR--HGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD----SAHSLFELASQL   88 (111)
T ss_pred             HHHHHHHHHHH--ccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh----HHHHHHHHHHHh
Confidence            34444444443  22222334777888888876542           57899999999999998    567777777665


Q ss_pred             HHccCHHHHHHHHHHHHhhC
Q psy5660          90 FFLKNYRSCLTDCQIALKLK  109 (337)
Q Consensus        90 ~~lg~~~~Al~d~~~Al~l~  109 (337)
                      -...-|.+|+.-|+++|...
T Consensus        89 ~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   89 GSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             hhHHHHHHHHHHHHHHhccc
Confidence            55667999999999998763

>KOG2047|consensus

Probab=89.50  E-value=20  Score=36.89  Aligned_cols=68  Identities=12%  Similarity=0.133  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL  108 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l  108 (337)
                      -..+..-|..|-..|+.++|...+++|....=...+..+.+|++-|..-++..+++.|+...++|...
T Consensus       387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v  454 (835)
T KOG2047|consen  387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV  454 (835)
T ss_pred             hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence            34555667777777888888888888877654444446777777777777777777777777777654

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=89.15  E-value=12  Score=32.04  Aligned_cols=65  Identities=6%  Similarity=-0.008  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD---YPKVKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~---~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                      ...++..+|.-|.+.|++..|+..|.++......   -...+++..++.+..+++.....++.++-.+
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4477888999999999999999999998876543   2467788899999999999999999998876

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=89.11  E-value=2.1  Score=39.60  Aligned_cols=53  Identities=15%  Similarity=0.004  Sum_probs=30.8

Q ss_pred             HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5660          86 AASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDE  138 (337)
Q Consensus        86 a~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~  138 (337)
                      |..++..|++.+|+..|++++.++|-+...+..+-..+..+|+--.|++.|.+
T Consensus       286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer  338 (361)
T COG3947         286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER  338 (361)
T ss_pred             HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence            44555556666666666666666665555555555555666655555555544

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=89.05  E-value=4.4  Score=38.88  Aligned_cols=68  Identities=13%  Similarity=0.008  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------------CCC---------------CHHHHHHHHHHHHhcCC
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKL--------------KPD---------------YPKVKLRAAQCLFHLKK  128 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l--------------~P~---------------~~ka~~r~a~a~~~lg~  128 (337)
                      ....+..++.++.+.|++..|.+.+++||-.              ++.               ...|++|....+.+.|-
T Consensus        39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~  118 (360)
T PF04910_consen   39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC  118 (360)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence            3344455666666666666666666665421              111               13566666777777777


Q ss_pred             HHHHHHHHHHHHhhCCC
Q psy5660         129 FEDCTHLCDELLKENPT  145 (337)
Q Consensus       129 ~~eA~~~~~~al~l~P~  145 (337)
                      +.-|.++|+-.+++||.
T Consensus       119 ~rTAlE~~KlLlsLdp~  135 (360)
T PF04910_consen  119 WRTALEWCKLLLSLDPD  135 (360)
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            77777777777777776

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0530|consensus

Probab=89.02  E-value=2.5  Score=38.58  Aligned_cols=92  Identities=17%  Similarity=0.144  Sum_probs=81.9

Q ss_pred             cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy5660          56 KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYR-SCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTH  134 (337)
Q Consensus        56 ~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~-~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~  134 (337)
                      +..+-+++.++.++-+|.    +-++|.-|-.+...+|+.. .-+..++.+|..+.+|..|+-.+-.|+...+.|+.-+.
T Consensus        93 dL~~El~~l~eI~e~npK----NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~  168 (318)
T KOG0530|consen   93 DLNKELEYLDEIIEDNPK----NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELA  168 (318)
T ss_pred             HHHHHHHHHHHHHHhCcc----chhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHH
Confidence            456778888999998898    6689998988888999988 89999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHH
Q psy5660         135 LCDELLKENPTDSTVID  151 (337)
Q Consensus       135 ~~~~al~l~P~~~~~~~  151 (337)
                      ++...|+.|-.|..+.+
T Consensus       169 y~~~Lle~Di~NNSAWN  185 (318)
T KOG0530|consen  169 YADELLEEDIRNNSAWN  185 (318)
T ss_pred             HHHHHHHHhhhccchhh
Confidence            99999999877766654

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=88.98  E-value=12  Score=34.13  Aligned_cols=108  Identities=11%  Similarity=0.034  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHH----hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc----c---CHHHHHHHHHHHHhh
Q psy5660          40 LATTYKDEGNFNFK----CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL----K---NYRSCLTDCQIALKL  108 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k----~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l----g---~~~~Al~d~~~Al~l  108 (337)
                      .+......|..+..    ..++.+|..+|.+|....-...   .....++|.++..-    +   +...|+..+.+|-..
T Consensus       108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a---~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~  184 (292)
T COG0790         108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA---ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL  184 (292)
T ss_pred             cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence            34455667777766    4588889999999888754311   23355666666543    1   334788888887766


Q ss_pred             CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660         109 KPDYPKVKLRAAQCLFH----LKKFEDCTHLCDELLKENPTDSTVIDLRT  154 (337)
Q Consensus       109 ~P~~~ka~~r~a~a~~~----lg~~~eA~~~~~~al~l~P~~~~~~~~l~  154 (337)
                      .  +..+.+++|.+|..    -.++.+|..||+++-+...  ......+.
T Consensus       185 ~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         185 G--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG  230 (292)
T ss_pred             c--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence            6  78888888877754    3488899999998888754  44444444

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=88.98  E-value=4.9  Score=32.25  Aligned_cols=68  Identities=12%  Similarity=0.052  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHH-------ccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGL-------KIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL  108 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai-------~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l  108 (337)
                      |..+--....+.+.|+|++++..-..||       +++.+...+-..+-++||.+...+|+.++|+..++.|-++
T Consensus        55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            4445566677778899887766666665       4555555667778889999999999999999999988654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=88.62  E-value=1.2  Score=41.47  Aligned_cols=77  Identities=16%  Similarity=0.070  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660          80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR-AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus        80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r-~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      .+|+.-++--.+.|-|..--..|.++++..|.|+..|.. .+.-+...++++.|...+.++|+++|+++.++...-+.
T Consensus       108 k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~  185 (435)
T COG5191         108 KIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM  185 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence            566666665567789999999999999999999998887 45667888999999999999999999999886654443

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.56  E-value=0.97  Score=33.02  Aligned_cols=32  Identities=25%  Similarity=0.336  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKI   70 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~   70 (337)
                      +.|..+..++-.+=+.|+|.+|+.+|++||++
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            56777788888888888888888888888775

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG0529|consensus

Probab=88.48  E-value=8.6  Score=37.21  Aligned_cols=103  Identities=14%  Similarity=0.090  Sum_probs=79.9

Q ss_pred             HHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhhCCCCHHHH-HHHHHHHHhcCC
Q psy5660          52 FKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK--NYRSCLTDCQIALKLKPDYPKVK-LRAAQCLFHLKK  128 (337)
Q Consensus        52 ~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg--~~~~Al~d~~~Al~l~P~~~ka~-~r~a~a~~~lg~  128 (337)
                      .++...+.-+.+-..++..+|+    .-.+|.-|..+..+.+  ++..-+..|.++++.||.|..+| ||+-.+-.....
T Consensus        86 ek~~~ld~eL~~~~~~L~~npk----sY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~  161 (421)
T KOG0529|consen   86 EKQALLDEELKYVESALKVNPK----SYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS  161 (421)
T ss_pred             HHHHhhHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence            3444567778888889999998    5588888999988765  57899999999999999998776 344444333333


Q ss_pred             ---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         129 ---FEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       129 ---~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                         ..+-++++.+++.-++.|-.+...+..+..
T Consensus       162 ~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  162 RNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             cccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence               788899999999989999888777766654

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=87.51  E-value=1.8  Score=39.24  Aligned_cols=62  Identities=13%  Similarity=0.156  Sum_probs=49.8

Q ss_pred             HHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q psy5660          60 AIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFH  125 (337)
Q Consensus        60 Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~  125 (337)
                      |..+|.+|+.+.|+    .+..|+.+|..+...|+.-.|+-.|-+++-..-.+..|.-++...+..
T Consensus         1 A~~~Y~~A~~l~P~----~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPS----NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TT----BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCC----CCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78899999999998    668999999999999999999999999997766667777777777766

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=86.67  E-value=1.2  Score=43.19  Aligned_cols=56  Identities=13%  Similarity=0.169  Sum_probs=44.8

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660          85 RAASNFFLKNYRSCLTDCQIALKLK---------PDYPKVKLRAAQCLFHLKKFEDCTHLCDELLK  141 (337)
Q Consensus        85 ra~~~~~lg~~~~Al~d~~~Al~l~---------P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~  141 (337)
                      +..+|.-+|+|..|+...+- |.++         +.++..+|..|-||+.++||.+|++.+...|-
T Consensus       128 LlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  128 LLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566779999999987653 2222         34678899999999999999999999998874

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=86.60  E-value=3  Score=37.78  Aligned_cols=62  Identities=11%  Similarity=-0.109  Sum_probs=49.4

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660          98 CLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus        98 Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      |...|.+|+.+.|.+...|..+|..+...|+.=+|+-+|-+++...-..+.+...+..+-.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999997754556666665555443

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=86.40  E-value=1  Score=25.39  Aligned_cols=23  Identities=17%  Similarity=0.251  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHH
Q psy5660         115 VKLRAAQCLFHLKKFEDCTHLCD  137 (337)
Q Consensus       115 a~~r~a~a~~~lg~~~eA~~~~~  137 (337)
                      +++.+|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            44555666666666666665543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2047|consensus

Probab=85.99  E-value=10  Score=38.80  Aligned_cols=109  Identities=14%  Similarity=0.160  Sum_probs=86.1

Q ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC---------Cc-----hHHHHHHHHHHHHHHHccCHHHHHH
Q psy5660          35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA---------DN-----DVNAQLYNNRAASNFFLKNYRSCLT  100 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~---------~~-----~~~~~~~~nra~~~~~lg~~~~Al~  100 (337)
                      .+-++.|..+-+-|..-++.++++.|+.+.+.|..+-..         .+     .....+|+-.+.....+|-+.++-.
T Consensus       419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~  498 (835)
T KOG2047|consen  419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA  498 (835)
T ss_pred             cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence            456788999999999999999999999999999886221         00     0134566666777777889999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660         101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN  143 (337)
Q Consensus       101 d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~  143 (337)
                      .|++.|.+.=..+....+.|.-+....-+++|.+.|++++.+.
T Consensus       499 vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF  541 (835)
T KOG2047|consen  499 VYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF  541 (835)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence            9999999887777778888888888888888888888888775

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.66  E-value=9.9  Score=27.75  Aligned_cols=34  Identities=15%  Similarity=0.126  Sum_probs=17.4

Q ss_pred             hcCCHHHHHHHHHH-------HHhhCCCCHHHHHHHHHHHH
Q psy5660         125 HLKKFEDCTHLCDE-------LLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       125 ~lg~~~eA~~~~~~-------al~l~P~~~~~~~~l~~~~~  158 (337)
                      ..|++.+|+.+|+.       +++..|++........++.+
T Consensus        18 ~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~e   58 (75)
T cd02682          18 KEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINE   58 (75)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            44455544444444       44556776655444444443

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=85.32  E-value=5.2  Score=33.02  Aligned_cols=49  Identities=16%  Similarity=0.250  Sum_probs=37.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660         112 YPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH  160 (337)
Q Consensus       112 ~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~  160 (337)
                      -....+..|+..+..|++..|.+.++.++..+|+|.+++.++..+.++.
T Consensus        69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l  117 (141)
T PF14863_consen   69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL  117 (141)
T ss_dssp             CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence            3456677788888899999999999999999999999988888877653

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.24  E-value=24  Score=30.47  Aligned_cols=100  Identities=7%  Similarity=-0.060  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--CCCHHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK--PDYPKVKLR  118 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~--P~~~ka~~r  118 (337)
                      ..+....|.....+|+-..|+..|+++-.-.+...-..-.+...-|..++..|-|+....-.+. |.-+  |-...|.-.
T Consensus        94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvep-La~d~n~mR~sArEA  172 (221)
T COG4649          94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEP-LAGDGNPMRHSAREA  172 (221)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhh-ccCCCChhHHHHHHH
Confidence            3445567788888999999999999987765532222344555455566677888876554432 2222  323344445


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHh
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLK  141 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~  141 (337)
                      +|.+.++.|++..|.++|.....
T Consensus       173 LglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         173 LGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HhHHHHhccchHHHHHHHHHHHc
Confidence            78888999999999999998775

>KOG2581|consensus

Probab=84.81  E-value=15  Score=35.54  Aligned_cols=122  Identities=16%  Similarity=0.159  Sum_probs=76.5

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHH--HHHccCHHHHHHHHHHHHhhC
Q psy5660          32 PLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAAS--NFFLKNYRSCLTDCQIALKLK  109 (337)
Q Consensus        32 p~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~--~~~lg~~~~Al~d~~~Al~l~  109 (337)
                      |+.....+.|.-+.-.|....-+++|..|.+++.+|+...|++..+-..--.|...|  .+-+|++.+-.-.++..++  
T Consensus       238 pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~--  315 (493)
T KOG2581|consen  238 PEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMR--  315 (493)
T ss_pred             ccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHH--
Confidence            434455578888888888888888888898888888888887544333333333333  3345776654444433221  


Q ss_pred             CCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         110 PDYPKVKLRAAQC--LFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       110 P~~~ka~~r~a~a--~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                       +....||.++++  .-.+.+|.+-++-|..-+..|-...-+..+...+
T Consensus       316 -ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~LivRLR~NV  363 (493)
T KOG2581|consen  316 -KSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYTLIVRLRHNV  363 (493)
T ss_pred             -HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence             234556666554  3456677788888877777776665555554444

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=84.52  E-value=8.3  Score=27.84  Aligned_cols=34  Identities=12%  Similarity=0.078  Sum_probs=28.3

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKI   70 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~   70 (337)
                      ..+.|..+..+|..+=..|+|++|+.+|.+|++.
T Consensus         4 ~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~   37 (77)
T smart00745        4 YLSKAKELISKALKADEAGDYEEALELYKKAIEY   37 (77)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3467788888888888899999999999988874

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=84.37  E-value=2.3  Score=30.19  Aligned_cols=32  Identities=16%  Similarity=0.192  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKI   70 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~   70 (337)
                      +.|..+..+|-.+=+.|+|++|+.+|++|++.
T Consensus         3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            45677778888888888888888888888874

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG2300|consensus

Probab=84.21  E-value=27  Score=34.80  Aligned_cols=100  Identities=21%  Similarity=0.182  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-hCCCC-----
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK-LKPDY-----  112 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~-l~P~~-----  112 (337)
                      -.|....-.|-.+..-+.|+.|...+..|.+.-.. .++.+.+-.|+|..|++.|+-.    ++-++++ +.|.|     
T Consensus       365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~-~dl~a~~nlnlAi~YL~~~~~e----d~y~~ld~i~p~nt~s~s  439 (629)
T KOG2300|consen  365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES-IDLQAFCNLNLAISYLRIGDAE----DLYKALDLIGPLNTNSLS  439 (629)
T ss_pred             hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH-HHHHHHHHHhHHHHHHHhccHH----HHHHHHHhcCCCCCCcch
Confidence            34566667788888888999999999999987543 4457788889999999977643    3334443 34543     


Q ss_pred             -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660         113 -----PKVKLRAAQCLFHLKKFEDCTHLCDELLKEN  143 (337)
Q Consensus       113 -----~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~  143 (337)
                           ..++|..|.-.+..+++.||.....+.|++.
T Consensus       440 sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  440 SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence                 2466778888889999999999999999986

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=83.77  E-value=8.3  Score=37.74  Aligned_cols=107  Identities=21%  Similarity=0.237  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccccC----Cch-------HHHHHHHHHHHHHHHc--cCHH-HHHHHHHHHHh
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA----DND-------VNAQLYNNRAASNFFL--KNYR-SCLTDCQIALK  107 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~----~~~-------~~~~~~~nra~~~~~l--g~~~-~Al~d~~~Al~  107 (337)
                      ......|-.++..|++.+|+..|+..|..-|-    +..       +..++.--.-.+.+.+  +... ....+-++.++
T Consensus       205 ~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lE  284 (422)
T PF06957_consen  205 EERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLE  284 (422)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHH
Confidence            34556799999999999999999999986442    111       1222221111122221  1111 12223334333


Q ss_pred             ---------hCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q psy5660         108 ---------LKPDYPKVKLRAA-QCLFHLKKFEDCTHLCDELLKENPTDST  148 (337)
Q Consensus       108 ---------l~P~~~ka~~r~a-~a~~~lg~~~eA~~~~~~al~l~P~~~~  148 (337)
                               |.|.+.---+|.| ...++.++|.-|..+.++.|++.|....
T Consensus       285 LAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~  335 (422)
T PF06957_consen  285 LAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV  335 (422)
T ss_dssp             HHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence                     3454443334444 3457889999999999999999987643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=83.29  E-value=3.2  Score=36.32  Aligned_cols=57  Identities=18%  Similarity=0.179  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC   98 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~A   98 (337)
                      ++-....|..|. ..+-.+|+..|.+++++...+..+++.++.-+|.+++++|+++.|
T Consensus       141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            444444444333 455666666666666665555455566666666666666666655

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.27  E-value=2.5  Score=31.05  Aligned_cols=32  Identities=16%  Similarity=0.238  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKI   70 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~   70 (337)
                      ..|..+..+|..+=+.|+|.+|+.+|.+||+.
T Consensus         4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~   35 (77)
T cd02683           4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDL   35 (77)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            56677778888888888888888888887764

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=83.23  E-value=7.8  Score=28.58  Aligned_cols=60  Identities=12%  Similarity=0.055  Sum_probs=45.9

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660          83 NNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVK---LRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus        83 ~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~---~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                      .-.|.=++...+.++|+..+++|++..++....+   --+++++...|+|++++++.-.=+.+
T Consensus        10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556677889999999999999988766444   34577889999999999886655543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=83.14  E-value=2.5  Score=27.47  Aligned_cols=25  Identities=20%  Similarity=0.421  Sum_probs=20.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660         117 LRAAQCLFHLKKFEDCTHLCDELLK  141 (337)
Q Consensus       117 ~r~a~a~~~lg~~~eA~~~~~~al~  141 (337)
                      +.+|.+|..+|+.+.|...++..+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5678888888888888888888884

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.06  E-value=2.6  Score=30.85  Aligned_cols=32  Identities=16%  Similarity=0.233  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKI   70 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~   70 (337)
                      ..|..+..++-.+=+.|+|.+|+.+|.+||+.
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            56777777888888888888888888888874

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.83  E-value=32  Score=30.10  Aligned_cols=55  Identities=20%  Similarity=0.153  Sum_probs=44.1

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCC-CCHHHH--HHHHHHHHhcCCHHHHHHHHHHH
Q psy5660          85 RAASNFFLKNYRSCLTDCQIALKLKP-DYPKVK--LRAAQCLFHLKKFEDCTHLCDEL  139 (337)
Q Consensus        85 ra~~~~~lg~~~~Al~d~~~Al~l~P-~~~ka~--~r~a~a~~~lg~~~eA~~~~~~a  139 (337)
                      .|.++...++++.|+..++.++..-. .+.+++  .|+|.+...+|.+++|+..++..
T Consensus        95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~  152 (207)
T COG2976          95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI  152 (207)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence            56667788999999999999986543 344544  68999999999999999887643

>KOG3617|consensus

Probab=82.65  E-value=11  Score=39.68  Aligned_cols=100  Identities=9%  Similarity=-0.053  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHc----------cccCC------chHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy5660          43 TYKDEGNFNFKCNKYRNAIINYTEGLK----------IKCAD------NDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL  106 (337)
Q Consensus        43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~----------~~p~~------~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al  106 (337)
                      .|.+.+..+-..++.+.|+++|.++-.          .+|..      ..-...+|..-|.-....|+.+.|+..|..|-
T Consensus       860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~  939 (1416)
T KOG3617|consen  860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK  939 (1416)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            455566666667788888998887632          12210      01134788888888888999999999887764


Q ss_pred             h---------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         107 K---------------------LKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       107 ~---------------------l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                      .                     ....+..|.|.+|+-|...|++.+|+.+|.++-..
T Consensus       940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            3                     24567788999999999999999999998887654

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=82.57  E-value=4.9  Score=24.83  Aligned_cols=29  Identities=10%  Similarity=-0.004  Sum_probs=15.9

Q ss_pred             HHHHHHHHHccCHHHHHHH--HHHHHhhCCC
Q psy5660          83 NNRAASNFFLKNYRSCLTD--CQIALKLKPD  111 (337)
Q Consensus        83 ~nra~~~~~lg~~~~Al~d--~~~Al~l~P~  111 (337)
                      ...|.++...|+|++|+..  ++-+..+++.
T Consensus         5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            3456666666666666666  3355555554

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG0985|consensus

Probab=82.55  E-value=4.8  Score=43.27  Aligned_cols=73  Identities=16%  Similarity=0.256  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660          43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQC  122 (337)
Q Consensus        43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a  122 (337)
                      ....-|+.+|..|.|+.|--+|.            +..-|..+|.....+|.|+.|++..++|     ++.|.|-..+.+
T Consensus      1196 ~i~~vGdrcf~~~~y~aAkl~y~------------~vSN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYS------------NVSNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFA 1258 (1666)
T ss_pred             hHHHHhHHHhhhhhhHHHHHHHH------------HhhhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHH
Confidence            45678999999999999999997            3456888999999999999999999988     456666555555


Q ss_pred             HHhcCCHHHH
Q psy5660         123 LFHLKKFEDC  132 (337)
Q Consensus       123 ~~~lg~~~eA  132 (337)
                      +...+.|.-|
T Consensus      1259 Cvd~~EFrlA 1268 (1666)
T KOG0985|consen 1259 CVDKEEFRLA 1268 (1666)
T ss_pred             HhchhhhhHH
Confidence            5555444444

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=82.42  E-value=28  Score=29.08  Aligned_cols=94  Identities=14%  Similarity=-0.071  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      +....+.+.-.......+..++.......=-+.|+.+    .+-.--|..++..|+|.+|+..++....-.+..+-+--.
T Consensus         8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~----e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL   83 (153)
T TIGR02561         8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLK----ELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKAL   83 (153)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcc----ccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHH
Confidence            5566677777777778899998888877777788844    555667888999999999999999988888777777778


Q ss_pred             HHHHHHhcCCHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLC  136 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~  136 (337)
                      ++.|+..+|+...=....
T Consensus        84 ~A~CL~al~Dp~Wr~~A~  101 (153)
T TIGR02561        84 LALCLNAKGDAEWHVHAD  101 (153)
T ss_pred             HHHHHHhcCChHHHHHHH
Confidence            899999999887655443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.30  E-value=14  Score=27.05  Aligned_cols=18  Identities=6%  Similarity=0.156  Sum_probs=12.5

Q ss_pred             hcCCHHHHHHHHHHHHhh
Q psy5660         125 HLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       125 ~lg~~~eA~~~~~~al~l  142 (337)
                      ..|+|++|+.+|..+++.
T Consensus        18 ~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681          18 QEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HccCHHHHHHHHHHHHHH
Confidence            567777777777777653

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=82.23  E-value=4.7  Score=33.27  Aligned_cols=52  Identities=15%  Similarity=0.077  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q psy5660          81 LYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDC  132 (337)
Q Consensus        81 ~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA  132 (337)
                      ....+|...+..|+|+-|+..++.++..+|+|..+...++.++.++|.-.+.
T Consensus        72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~  123 (141)
T PF14863_consen   72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN  123 (141)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence            3445777788889999999999999999999999998889988887654443

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=82.01  E-value=15  Score=32.79  Aligned_cols=62  Identities=16%  Similarity=0.060  Sum_probs=37.9

Q ss_pred             HHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q psy5660          48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP  113 (337)
Q Consensus        48 Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~  113 (337)
                      ...+.+.+...+|+.....-++.+|.+...+..    +=..+.-.|+|.+|+..|+-+-.+.|.+.
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~Rhf----lfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHF----LFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhH----HHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            345666677777777777777777765432222    22233345777777777777777777654

>KOG0529|consensus

Probab=81.99  E-value=40  Score=32.77  Aligned_cols=104  Identities=16%  Similarity=0.130  Sum_probs=75.8

Q ss_pred             HHhCcH-HHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH------------ccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          52 FKCNKY-RNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF------------LKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        52 ~k~g~y-~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~------------lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      .+.|.| ..+++.=++.+..+|.    ...+|+-|-.+...            ..-.++-+.....+|+.+|+..-+|+.
T Consensus        39 r~~~~yd~e~l~lt~~ll~~npe----~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~h  114 (421)
T KOG0529|consen   39 REAKEYDEEHLELTSELLEKNPE----FYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHH  114 (421)
T ss_pred             HhccccchHHHHHHHHHHhhCch----hhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHH
Confidence            344566 4466666666666776    44555554443332            234666777888999999999999999


Q ss_pred             HHHHHHhcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         119 AAQCLFHLK--KFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       119 ~a~a~~~lg--~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +..++...+  ++..-++.|.++|++||.|-.....+.-+..+
T Consensus       115 R~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~  157 (421)
T KOG0529|consen  115 RKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQ  157 (421)
T ss_pred             HHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHH
Confidence            999998776  47888999999999999998777766665554

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=81.96  E-value=10  Score=34.20  Aligned_cols=64  Identities=25%  Similarity=0.233  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy5660          77 VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD--Y----PKVKLRAAQCLFHLKKFEDCTHLCDELL  140 (337)
Q Consensus        77 ~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~--~----~ka~~r~a~a~~~lg~~~eA~~~~~~al  140 (337)
                      ....+...+|.-|+++|+|++|+..++.+...-..  .    ...+.++..|+..+|+.++.+..+-+++
T Consensus       176 ~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  176 MASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            36677788999999999999999999998766332  2    3566788899999999999888776554

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG0985|consensus

Probab=81.62  E-value=19  Score=38.94  Aligned_cols=88  Identities=15%  Similarity=0.222  Sum_probs=67.6

Q ss_pred             HHHHHHHHhCcHHHHHHHHHH------HHcc----------------ccCCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660          46 DEGNFNFKCNKYRNAIINYTE------GLKI----------------KCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ  103 (337)
Q Consensus        46 ~~Gn~~~k~g~y~~Ai~~Y~~------ai~~----------------~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~  103 (337)
                      +-|+.+...+-|++|...|.+      |+..                .|+    .+.+|+.+|.+.++.|...+|++.+-
T Consensus      1053 ~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n----~p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCN----EPAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred             hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhC----ChHHHHHHHHHHHhcCchHHHHHHHH
Confidence            346666777777777776653      3322                233    45899999999999999999999997


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       104 ~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                      +|     +++..|...-.+....|.|++-+.++..+-+-
T Consensus      1129 ka-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1129 KA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred             hc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            65     56778888888889999999999888777643

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=81.47  E-value=31  Score=33.14  Aligned_cols=102  Identities=15%  Similarity=0.052  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc--------------ccC------------CchHHHHHHHHHHHHHHHc
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKI--------------KCA------------DNDVNAQLYNNRAASNFFL   92 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~--------------~p~------------~~~~~~~~~~nra~~~~~l   92 (337)
                      -....+...+.++..+|++..|.+...+||=.              +..            +.... .+.........+.
T Consensus        38 yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ff-lal~r~i~~L~~R  116 (360)
T PF04910_consen   38 YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFF-LALFRYIQSLGRR  116 (360)
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHH-HHHHHHHHHHHhc
Confidence            45677778888888888888888877777632              111            11111 2222344556678


Q ss_pred             cCHHHHHHHHHHHHhhCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660          93 KNYRSCLTDCQIALKLKPD-YPK-VKLRAAQCLFHLKKFEDCTHLCDELLK  141 (337)
Q Consensus        93 g~~~~Al~d~~~Al~l~P~-~~k-a~~r~a~a~~~lg~~~eA~~~~~~al~  141 (337)
                      |-++.|++.|+-.+.+||. ++- +.+.+=...++.++|+-=++.++....
T Consensus       117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence            9999999999999999998 554 444445555777899888888887665

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=81.21  E-value=4.6  Score=37.40  Aligned_cols=54  Identities=19%  Similarity=0.252  Sum_probs=48.8

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5660          85 RAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDE  138 (337)
Q Consensus        85 ra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~  138 (337)
                      -+.-....|++..|...+..|+..+|.+..+...+|.|+...|+.++|...+..
T Consensus       140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            455667889999999999999999999999999999999999999999887654

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=81.17  E-value=2.1  Score=24.10  Aligned_cols=24  Identities=4%  Similarity=-0.241  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHH
Q psy5660          80 QLYNNRAASNFFLKNYRSCLTDCQ  103 (337)
Q Consensus        80 ~~~~nra~~~~~lg~~~~Al~d~~  103 (337)
                      .++.++|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            355667777777777777766554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=80.31  E-value=49  Score=31.09  Aligned_cols=82  Identities=11%  Similarity=0.041  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH---HhcCCHHHHH
Q psy5660          57 YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCL---FHLKKFEDCT  133 (337)
Q Consensus        57 y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~---~~lg~~~eA~  133 (337)
                      .+..+..|.+||+.+|++.    .++..+=.+..+..+-.....-+++++..+|++...|...-...   ...-.+....
T Consensus        47 ~E~klsilerAL~~np~~~----~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~  122 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSE----RLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVR  122 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHH
Confidence            5677899999999999743    44444444455677888888999999999999886665443332   3344678888


Q ss_pred             HHHHHHHhh
Q psy5660         134 HLCDELLKE  142 (337)
Q Consensus       134 ~~~~~al~l  142 (337)
                      ..|.++++.
T Consensus       123 ~~y~~~l~~  131 (321)
T PF08424_consen  123 DVYEKCLRA  131 (321)
T ss_pred             HHHHHHHHH
Confidence            888888864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	337
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		9e-07
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		4e-05
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		1e-04
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		1e-04
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		1e-04

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
           ELA   K++GN  FK   Y  A+ +Y E +K     +  NA LY+NRAA    L  ++  
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK----RDPENAILYSNRAACLTKLMEFQRA 66
Query: 99  LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157
           L DC   ++L   + K  +R A CL  ++++       ++ L+ +P++    +   +C+
Sbjct: 67  LDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
           +LA   K++GN  F+   Y  A+ +YTE +K     N  +A+LY+NRAA    L  ++  
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAIK----RNPKDAKLYSNRAACYTKLLEFQLA 69
Query: 99  LTDCQIALKLKPDYPKVKLRAAQCLFHLKKF 129
           L DC+  ++L+P + K   R A  L  +K +
Sbjct: 70  LKDCEECIQLEPTFIKGYTRKAAALEAMKDY 100

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 45  KDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQI 104
           + EGN  FKC  Y  A+  YT+ L +     D  A L+ NRAA +  L++Y    T+   
Sbjct: 32  RKEGNELFKCGDYGGALAAYTQALGLDATPQD-QAVLHRNRAACHLKLEDYDKAETEASK 90
Query: 105 ALKLKPDYPKVKLRAAQCLFHLKKFE 130
           A++      K   R +Q L  L + +
Sbjct: 91  AIEKDGGDVKALYRRSQALEKLGRLD 116

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
           A   K EGN   K   +  A+  Y + +++    N  NA  + NRAA+   L NY   + 
Sbjct: 12  AERLKTEGNEQMKVENFEAAVHFYGKAIEL----NPANAVYFCNRAAAYSKLGNYAGAVQ 67
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDST 148
           DC+ A+ + P Y K   R    L  L K  +      + L+ +P + T
Sbjct: 68  DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNET 115

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
           A   KD+GN  F+  KY +AI  Y   L++K      +   Y+N +A    + + +  + 
Sbjct: 6   ALALKDKGNQFFRNKKYDDAIKYYNWALELK-----EDPVFYSNLSACYVSVGDLKKVVE 60
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDC 132
               AL+LKPDY KV LR A     L KF D 
Sbjct: 61  MSTKALELKPDYSKVLLRRASANEGLGKFADA 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	337
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	7e-27
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-26
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-26
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	6e-26
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-25
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-25
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	9e-25
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-24
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	3e-24
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	1e-23
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-23
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-23
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	8e-22
2l6j_A	111	TPR repeat-containing protein associated with HSP;	8e-21
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	5e-20
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-19
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-08
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-17
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-04
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	8e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	6e-12
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-10
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	6e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	8e-06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	7e-04

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  103 bits (258), Expect = 7e-27
 Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 7/159 (4%)

Query: 29  KYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAAS 88
           + +P  +   + A   K + N  FK   Y NAI  Y++ +++    N  NA  Y NR+ +
Sbjct: 1   RDEPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLA 56

Query: 89  NFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDST 148
               + Y   L D   A++L   Y K   R A     L KF       + ++K  P D  
Sbjct: 57  YLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD 116

Query: 149 VIDLRTSCINKHKEILRNERKQAQQVKKEEKEKERVLQI 187
                  C   +K + +   ++A    + ++     L I
Sbjct: 117 AKMKYQEC---NKIVKQKAFERAIAGDEHKRSVVDSLDI 152

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  100 bits (251), Expect = 2e-26
 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 4/119 (3%)

Query: 38  EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRS 97
            ELA   K++GN  FK   Y  A+ +Y E +K     +  NA LY+NRAA    L  ++ 
Sbjct: 10  PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR----DPENAILYSNRAACLTKLMEFQR 65

Query: 98  CLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156
            L DC   ++L   + K  +R A CL  ++++       ++ L+ +P++    +   +C
Sbjct: 66  ALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  100 bits (252), Expect = 2e-26
 Identities = 27/147 (18%), Positives = 48/147 (32%), Gaps = 14/147 (9%)

Query: 37  PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYR 96
               A   K++GN  F   KY  A   Y   +      N + A  Y NRA     ++   
Sbjct: 5   KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPE 60

Query: 97  SCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156
             L DC+ AL+L     K      QC   ++ +++                         
Sbjct: 61  QALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL-------- 112

Query: 157 INKHKEILRNERKQAQQVKKEEKEKER 183
                + + +  + A++ +    E+ R
Sbjct: 113 --NFGDDIPSALRIAKKKRWNSIEERR 137

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  100 bits (250), Expect = 6e-26
 Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 1/120 (0%)

Query: 37  PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYR 96
                   + EGN  FKC  Y  A+  YT+ L +  A     A L+ NRAA +  L++Y 
Sbjct: 24  GASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-DATPQDQAVLHRNRAACHLKLEDYD 82

Query: 97  SCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156
              T+   A++      K   R +Q L  L + +         +   P +    +   + 
Sbjct: 83  KAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 99.8 bits (249), Expect = 1e-25
 Identities = 31/154 (20%), Positives = 50/154 (32%), Gaps = 6/154 (3%)

Query: 32  PLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF 91
           P    P   +   K EGN      +Y  AI  YT+ L I       N    +NRAA+   
Sbjct: 2   PRSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI----APANPIYLSNRAAAYSA 57

Query: 92  LKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVID 151
              +     D ++A  + P Y K   R     F +  ++      ++ ++      +   
Sbjct: 58  SGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAM 117

Query: 152 LR--TSCINKHKEILRNERKQAQQVKKEEKEKER 183
            R   +   K +E  R     A  V         
Sbjct: 118 KRGLETTKRKIEEANRGAEPPADDVDDAAGASRG 151

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 98.5 bits (246), Expect = 1e-25
 Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 29  KYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAAS 88
            +    +   +LA   K++GN  F+   Y  A+ +YTE +K     N  +A+LY+NRAA 
Sbjct: 4   HHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR----NPKDAKLYSNRAAC 59

Query: 89  NFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDST 148
              L  ++  L DC+  ++L+P + K   R A  L  +K +     +  + L  + +   
Sbjct: 60  YTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKE 119

Query: 149 VIDLRTSC 156
             D    C
Sbjct: 120 AADGYQRC 127

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 96.1 bits (240), Expect = 9e-25
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 4/124 (3%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
             A   K EGN   K   +  A+  Y + +++    N  NA  + NRAA+   L NY   
Sbjct: 10  AEAERLKTEGNEQMKVENFEAAVHFYGKAIEL----NPANAVYFCNRAAAYSKLGNYAGA 65

Query: 99  LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158
           + DC+ A+ + P Y K   R    L  L K  +      + L+ +P + T          
Sbjct: 66  VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125

Query: 159 KHKE 162
           K +E
Sbjct: 126 KLRE 129

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 95.3 bits (238), Expect = 2e-24
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 4/113 (3%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
           E     K++GN         +A+  Y+E +K+    +  N  LY+NR+A+     +Y+  
Sbjct: 2   EQVNELKEKGNKALSVGNIDDALQCYSEAIKL----DPHNHVLYSNRSAAYAKKGDYQKA 57

Query: 99  LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVID 151
             D    + LKPD+ K   R A  L  L +FE+     +E LK    +  + +
Sbjct: 58  YEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKE 110

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 99.2 bits (247), Expect = 3e-24
 Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 4/168 (2%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
           A   K++GN  F   KY  A   Y   +      N + A  Y NRA     ++     L 
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALA 59

Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH 160
           DC+ AL+L     K      QC   ++ +++                           + 
Sbjct: 60  DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119

Query: 161 KEILRNERKQAQQVKKEEKEKERVLQIIRERKIKLATSGKGDLKSFSD 208
            +  R    + +++ +E +    + ++I   + +     + + +   D
Sbjct: 120 AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHED 167

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 93.1 bits (232), Expect = 1e-23
 Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 19/141 (13%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
           A   + EG   F  + + NA+  YTE +K        +A+ Y+NRAA+   L ++   + 
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKR----APEDARGYSNRAAALAKLMSFPEAIA 59

Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH 160
           DC  A++  P++ +  +R A     +K++       D    ++   +             
Sbjct: 60  DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG----------- 108

Query: 161 KEILRNERKQAQQVKKEEKEK 181
                + R+  Q   K  +++
Sbjct: 109 ----SSAREIDQLYYKASQQR 125

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 93.6 bits (233), Expect = 2e-23
 Identities = 27/166 (16%), Positives = 48/166 (28%), Gaps = 31/166 (18%)

Query: 35  NTPEE---LATTYKDEGNFNFKCNKYRNAIINYTEGLKI--------------KCADNDV 77
           N  ++        + +GN  F    Y+ AI  Y + L                    +  
Sbjct: 2   NAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK 61

Query: 78  NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCD 137
           N  LY N +     + +           LK +    K   R A+      K ++      
Sbjct: 62  NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLK 121

Query: 138 ELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKEKER 183
            LL+ +P                  ++  E K   + + E+K   R
Sbjct: 122 LLLRNHPAA--------------ASVVAREMKIVTERRAEKKADSR 153

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 94.8 bits (236), Expect = 2e-23
 Identities = 36/180 (20%), Positives = 59/180 (32%), Gaps = 20/180 (11%)

Query: 24  GLQQLKYDPLENTPEE---LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD------ 74
             Q  K    + T EE    A   K+EGN  FK N+   AI+ Y E L            
Sbjct: 18  YFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ 77

Query: 75  ------NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKK 128
                  ++      N A      K+Y   +      LK+  +  K   +      +   
Sbjct: 78  ILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF 137

Query: 129 FEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQ-----AQQVKKEEKEKER 183
            E+      +    NP +  + +    C+NK KE  + ++        +    EEK+   
Sbjct: 138 LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYEEKKNSA 197

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 88.5 bits (220), Expect = 8e-22
 Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 26/148 (17%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
           + A   K+ GN  +K   +  A+ +Y +  ++    +  N     N+AA  F   +Y  C
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKEL----DPTNMTYITNQAAVYFEKGDYNKC 57

Query: 99  LTDCQIALKLKPDYPKVK-------LRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVID 151
              C+ A+++  +  +          R     F  +K++D  H  ++ L E+ T      
Sbjct: 58  RELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT------ 111

Query: 152 LRTSCINKHKEILRNERKQAQQVKKEEK 179
                     ++L+  ++  + +K++E+
Sbjct: 112 ---------PDVLKKCQQAEKILKEQER 130

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 85.1 bits (211), Expect = 8e-21
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 5/103 (4%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
               K++GN  FK   YR A+  Y + +         N   Y+N+A +   L  Y   + 
Sbjct: 4   FEKQKEQGNSLFKQGLYREAVHCYDQLITA----QPQNPVGYSNKAMALIKLGEYTQAIQ 59

Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN 143
            CQ  L+       V +R+    + L+  +         + E 
Sbjct: 60  MCQQGLRYTSTAEHVAIRSK-LQYRLELAQGAVGSVQIPVVEV 101

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 88.4 bits (219), Expect = 5e-20
 Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 14/166 (8%)

Query: 31  DPLENTPEE---LATTYKDEGNFNFKCNKYRNAIINYTEGLKI-----------KCADND 76
           +  E   EE    +T  K+ G   FK  KY+ A++ Y + +                   
Sbjct: 134 ESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQA 193

Query: 77  VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLC 136
           +    + N A  +  L+ + + +  C  AL+L  +  K   R  +    +  FE      
Sbjct: 194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADF 253

Query: 137 DELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKEKE 182
            ++L+  P +         C  + +  L  E+K    + +   E+E
Sbjct: 254 QKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEE 299

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 82.7 bits (205), Expect = 1e-19
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 11/126 (8%)

Query: 35  NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKN 94
           N   + A   KD GN  +K   +  A ++Y + +++    +  N   YNN+AA  F  K 
Sbjct: 2   NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL----DPSNITFYNNKAAVYFEEKK 57

Query: 95  YRSCLTDCQIALKLKPD-------YPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
           +  C+  C+ A+++  +         K   RA                    L E     
Sbjct: 58  FAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117

Query: 148 TVIDLR 153
            V  ++
Sbjct: 118 LVKKVK 123

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 87.8 bits (218), Expect = 1e-19
 Identities = 16/139 (11%), Positives = 46/139 (33%)

Query: 44  YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ 103
             +      +  +Y +A   Y   +K + +  +   +            +     +  C 
Sbjct: 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319

Query: 104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEI 163
             L+++PD        A+     + +++     +   + N  D  + +         K+ 
Sbjct: 320 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS 379

Query: 164 LRNERKQAQQVKKEEKEKE 182
            + +  +   VK+  K++E
Sbjct: 380 QKRDYYKILGVKRNAKKQE 398

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 77.0 bits (190), Expect = 8e-16
 Identities = 23/152 (15%), Positives = 57/152 (37%), Gaps = 10/152 (6%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
              + + G       +  +A+  +   +      +  N   Y  RA     +   ++ L 
Sbjct: 26  VEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALP 81

Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH 160
           D    ++LK D+   +L+    L    K ++      ++LK NP+++   + + S + K 
Sbjct: 82  DLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQ-SQLIKS 140

Query: 161 KEILRNERKQAQQVKKEEKEK-----ERVLQI 187
            E+ R   +        +        +++L++
Sbjct: 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 31/226 (13%), Positives = 68/226 (30%), Gaps = 50/226 (22%)

Query: 28  LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDV---------- 77
           ++         +        G+   K  K   A  ++ + LK   ++N+           
Sbjct: 87  IQLKM------DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140

Query: 78  -NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLC 136
              Q   ++A + F   +Y + +      L++     +++   A+C     +        
Sbjct: 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 200

Query: 137 DELLKENPTDSTVIDLR-------------TSCINK-------HKEILRNERKQAQQVKK 176
               K    ++                    S + +       HK    + ++    VKK
Sbjct: 201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ----VKK 256

Query: 177 EEKEKERVLQIIRERKIKLATSGKGDLKSFS---DLEPNFPEITLR 219
             K  E   ++IR+ +   A         +      EP+  E T+R
Sbjct: 257 LNKLIESAEELIRDGRYTDA------TSKYESVMKTEPSIAEYTVR 296

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 20/146 (13%)

Query: 28  LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAA 87
           +K +P  +  E    + +   +   K  K   AI   +E L++       N     +RA 
Sbjct: 284 MKTEP--SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM----EPDNVNALKDRAE 337

Query: 88  SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
           +    + Y   + D + A +   +  +++    +    LK+ +   +     +K N    
Sbjct: 338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK- 396

Query: 148 TVIDLRTSCINKHKEILRNERKQAQQ 173
                        +EI++  RK A Q
Sbjct: 397 -------------QEIIKAYRKLALQ 409

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 85.4 bits (212), Expect = 7e-19
 Identities = 15/138 (10%), Positives = 45/138 (32%), Gaps = 15/138 (10%)

Query: 44  YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ 103
             +      +  +Y +A   Y   +K + +  +   +            +     +  C 
Sbjct: 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICS 296

Query: 104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEI 163
             L+++PD        A+     + +++     +   + N  D  +              
Sbjct: 297 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI-------------- 342

Query: 164 LRNERKQAQQVKKEEKEK 181
            R   ++AQ++ K+ +++
Sbjct: 343 -REGLEKAQRLLKQSQKR 359

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 72.7 bits (179), Expect = 1e-14
 Identities = 23/152 (15%), Positives = 54/152 (35%), Gaps = 10/152 (6%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
              + + G       +  +A+  +   +      +  N   Y  RA     +   ++ L 
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALP 58

Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH 160
           D    + LK D+   +L+    L    K ++      ++LK NP++    +   S + K 
Sbjct: 59  DLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE-SQLVKA 117

Query: 161 KEILRNERKQAQQVKKEEKEK-----ERVLQI 187
            E+ R   +        +        +++L++
Sbjct: 118 DEMQRLRSQALDAFDGADYTAAITFLDKILEV 149

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 19/103 (18%), Positives = 44/103 (42%), Gaps = 6/103 (5%)

Query: 28  LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAA 87
           +K +P  +  E    + +   +   K  K   AI   +E L+++   ++VNA    +RA 
Sbjct: 261 MKTEP--SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--PDNVNA--LKDRAE 314

Query: 88  SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFE 130
           +    + Y   + D + A +   +  +++    +    LK+ +
Sbjct: 315 AYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 31/226 (13%), Positives = 66/226 (29%), Gaps = 50/226 (22%)

Query: 28  LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDV---------- 77
           +          +        G+   K  K   A  ++ + LK   ++ +           
Sbjct: 64  IALKM------DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117

Query: 78  -NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLC 136
              Q   ++A   F   +Y + +T     L++     +++   A+C     +        
Sbjct: 118 DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 177

Query: 137 DELLKENPTDSTVIDLR-------------TSCINK-------HKEILRNERKQAQQVKK 176
               K    ++                    S + +       HK    + ++    VKK
Sbjct: 178 KAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ----VKK 233

Query: 177 EEKEKERVLQIIRERKIKLATSGKGDLKSFS---DLEPNFPEITLR 219
             K  E   ++IR+ +   A         +      EP+  E T+R
Sbjct: 234 LNKLIESAEELIRDGRYTDA------TSKYESVMKTEPSVAEYTVR 273

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 81.2 bits (200), Expect = 2e-17
 Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 17/159 (10%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKI-------------KCADNDVNAQLYNNRAA 87
           A   K +GN  FK  K   A+  Y   +               +     V    + N AA
Sbjct: 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAA 238

Query: 88  SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
               LK Y   +  C I L  +   PK   R  +    L + +       +  K  P D 
Sbjct: 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK 298

Query: 148 TVIDLRTSCINKHKEILRNERKQAQ----QVKKEEKEKE 182
            +     +   + K + + +++  +       +   + +
Sbjct: 299 AIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAKSK 337

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 81.3 bits (201), Expect = 3e-17
 Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 10/163 (6%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
           + A   K + N  FK   Y NAI  Y++ +++    N  NA  Y NR+ +    + Y   
Sbjct: 4   KRAEELKTQANDYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTECYGYA 59

Query: 99  LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158
           L D   A++L   Y K   R A     L KF       + ++K  P D         C  
Sbjct: 60  LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC-- 117

Query: 159 KHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKLATSGKG 201
              +I++  +K  ++    ++ K  V+  +    + +     G
Sbjct: 118 --NKIVK--QKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 78.2 bits (193), Expect = 3e-16
 Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 12/175 (6%)

Query: 38  EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRS 97
           ++ A   KD+GN  F+  KY +AI  Y   L++       +   Y+N +A    + + + 
Sbjct: 3   DKYALALKDKGNQFFRNKKYDDAIKYYNWALEL-----KEDPVFYSNLSACYVSVGDLKK 57

Query: 98  CLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDEL-LKENPTDSTVID----- 151
            +     AL+LKPDY KV LR A     L KF D       L L  +  D+++       
Sbjct: 58  VVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERN 117

Query: 152 LRTSCINKHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKLATSGKGDLKSF 206
           L    ++K KE    +   A     E   +    +  ++  +   TS       F
Sbjct: 118 LNKQAMSKLKEKF-GDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 69.8 bits (171), Expect = 2e-13
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 5/119 (4%)

Query: 29  KYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAAS 88
           K +  E   E+LA + +  G F F  N    A  +  + +++           Y   A  
Sbjct: 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-----FPRVNSYIYMALI 279

Query: 89  NFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
                +          ALKL  +   V     Q  F L+ ++      D+  + +P + 
Sbjct: 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI 338

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 4/132 (3%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
             ++ Y   G  NF    Y  A  ++ +  ++    +  N   Y   A   +    +  C
Sbjct: 302 NNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL----DPENIFPYIQLACLAYRENKFDDC 357

Query: 99  LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158
            T    A +  P+ P+V    A+ L     F+      D  ++       +       + 
Sbjct: 358 ETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417

Query: 159 KHKEILRNERKQ 170
           K   + RN   +
Sbjct: 418 KATLLTRNPTVE 429

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.8 bits (145), Expect = 4e-10
 Identities = 22/148 (14%), Positives = 50/148 (33%), Gaps = 14/148 (9%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAA---------SN 89
           E               N +  A+  Y   +++     +    +Y   A           N
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIEL----ENKLDGIYVGIAPLVGKATLLTRN 425

Query: 90  FFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV 149
             ++N+       + A KL P   + K+  AQ     +  ++   L +E      T    
Sbjct: 426 PTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485

Query: 150 IDLRTSC-INKHKEILRNERKQAQQVKK 176
           +   T     K ++ +R++   A+++++
Sbjct: 486 LQAITFAEAAKVQQRIRSDPVLAKKIQE 513

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
             +Y          N        + + LK+    +  N+ +Y +R   NF L+NY     
Sbjct: 270 VNSYIYMALIMADRNDSTEYYNYFDKALKL----DSNNSSVYYHRGQMNFILQNYDQAGK 325

Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
           D   A +L P+     ++ A   +   KF+DC  L  E  ++ P   
Sbjct: 326 DFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP 372

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 76.1 bits (188), Expect = 4e-16
 Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 18/147 (12%)

Query: 26  QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNR 85
            +   +P      E A   + EG   F  + + NA+  YTE +K        +A+ Y+NR
Sbjct: 130 AEAYVNP------EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR----APEDARGYSNR 179

Query: 86  AASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT 145
           AA+   L ++   + DC  A++  P++ +  +R A     +K++       D    ++  
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 239

Query: 146 DSTVIDLRTSCINKHKEILRNERKQAQ 172
            +          +  +EI +   K +Q
Sbjct: 240 VNNG--------SSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 64.5 bits (158), Expect = 4e-12
 Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
            +A   K EGN  +K  ++  AI +Y +  ++       +    NNRAA+ +    Y + 
Sbjct: 3   SMADKEKAEGNKFYKARQFDEAIEHYNKAWEL-----HKDITYLNNRAAAEYEKGEYETA 57

Query: 99  LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
           ++    A++   +        ++    +     
Sbjct: 58  ISTLNDAVEQGREMRADYKVISKSFARIGNAYH 90

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 13/109 (11%), Positives = 34/109 (31%), Gaps = 5/109 (4%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
           E+   YK       +     + + +  + ++         +   +  A     L+N    
Sbjct: 70  EMRADYKVISKSFARIGNAYHKLGDLKKTIEY-----YQKSLTEHRTADILTKLRNAEKE 124

Query: 99  LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
           L   +    + P+  +      +  F    + +      E++K  P D+
Sbjct: 125 LKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA 173

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 8/70 (11%), Positives = 22/70 (31%), Gaps = 1/70 (1%)

Query: 78  NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCD 137
            A          +  + +   +     A +L  D   +  RAA   +   ++E      +
Sbjct: 4   MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAA-AEYEKGEYETAISTLN 62

Query: 138 ELLKENPTDS 147
           + +++     
Sbjct: 63  DAVEQGREMR 72

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 73.9 bits (181), Expect = 8e-15
 Identities = 35/189 (18%), Positives = 69/189 (36%), Gaps = 15/189 (7%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKI-----------KCADNDVNAQLYNNRAA 87
           E A   K++G   FK  KY  A+I Y + +               A        + N A 
Sbjct: 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325

Query: 88  SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
               L+ Y   +  C  AL L     K   R  +    + +FE      +++L+ NP + 
Sbjct: 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385

Query: 148 TVIDLRTSCINKHKEILRNERKQA----QQVKKEEKEKERVLQIIRERKIKLATSGKGDL 203
                 + C  K KE    +R+      ++  +++ ++E    + ++    +      D 
Sbjct: 386 AARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDS 445

Query: 204 KSFSDLEPN 212
           ++  + +P 
Sbjct: 446 QAMEEEKPE 454

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 73.6 bits (181), Expect = 1e-14
 Identities = 32/176 (18%), Positives = 54/176 (30%), Gaps = 10/176 (5%)

Query: 34  ENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK 93
            +  +  A   K+ GN  F    +  AI  Y   +++    +      Y+N +A      
Sbjct: 18  PSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL----DPNEPVFYSNISACYISTG 73

Query: 94  NYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVID-- 151
           +    +     AL++KPD+ K  LR A     L  F D       L      D   I+  
Sbjct: 74  DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPM 133

Query: 152 ----LRTSCINKHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKLATSGKGDL 203
               L    +    E L  +  +  QV            I        + +   + 
Sbjct: 134 LERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY 189

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 5/118 (4%)

Query: 30  YDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASN 89
               +   E  A      G F+F  N   +A +   E + +           Y   A + 
Sbjct: 232 NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL-----HPTPNSYIFLALTL 286

Query: 90  FFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
              +N +      Q A+ L P+YP       Q  F L+ +++      +    NP + 
Sbjct: 287 ADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV 344

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 56.3 bits (136), Expect = 6e-09
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 4/109 (3%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
             +Y             +     + + + +    N      Y +R    F L++Y++   
Sbjct: 276 PNSYIFLALTLADKENSQEFFKFFQKAVDL----NPEYPPTYYHRGQMYFILQDYKNAKE 331

Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV 149
           D Q A  L P+     ++ A  L+   KF +     +E   + PT   V
Sbjct: 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV 380

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.9 bits (135), Expect = 8e-09
 Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 4/143 (2%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
           E   TY   G   F    Y+NA  ++ +   +    N  N   Y   A   +    +   
Sbjct: 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL----NPENVYPYIQLACLLYKQGKFTES 363

Query: 99  LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158
                      P  P+V    A+ L     F+      D   +       +       I 
Sbjct: 364 EAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423

Query: 159 KHKEILRNERKQAQQVKKEEKEK 181
           K   + R   +   Q+ +E+   
Sbjct: 424 KATILARQSSQDPTQLDEEKFNA 446

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.8 bits (127), Expect = 8e-08
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 2/93 (2%)

Query: 56  KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV 115
            + N   +  +   +  +     A    NR    F  KN+   +   Q A++L P+ P  
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61

Query: 116 -KLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
               +A C       E       + L+  P  S
Sbjct: 62  YSNISA-CYISTGDLEKVIEFTTKALEIKPDHS 93

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 14/122 (11%), Positives = 32/122 (26%), Gaps = 20/122 (16%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
           E    Y       +K  K+  +   + E             ++    A       ++ + 
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLK----FPTLPEVPTFFAEILTDRGDFDTA 397

Query: 99  LTDCQIALKLKPDYPKV----------------KLRAAQCLFHLKKFEDCTHLCDELLKE 142
           +    IA +L+    K+                +          +KF     L  +  + 
Sbjct: 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457

Query: 143 NP 144
           +P
Sbjct: 458 DP 459

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 13/121 (10%), Positives = 34/121 (28%), Gaps = 12/121 (9%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIK------------CADNDVNAQLYNNRA 86
            L                +  AI  Y    +++                       +++ 
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435

Query: 87  ASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
            +    + + + +     A +L P   + K+  AQ    ++K ++   L ++      T 
Sbjct: 436 PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495

Query: 147 S 147
            
Sbjct: 496 D 496

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 14/143 (9%), Positives = 33/143 (23%), Gaps = 20/143 (13%)

Query: 26  QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLK---------------- 69
           + L    ++   E L+                 +    +   L+                
Sbjct: 136 RNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYAL 195

Query: 70  ----IKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFH 125
               ++   +  +                Y S L+   +   L+ +            F 
Sbjct: 196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255

Query: 126 LKKFEDCTHLCDELLKENPTDST 148
                D   L  E +  +PT ++
Sbjct: 256 KNNLLDAQVLLQESINLHPTPNS 278

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 10/106 (9%), Positives = 27/106 (25%), Gaps = 13/106 (12%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
            +      +        K+  AI   T+  ++        A      A     ++     
Sbjct: 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRSEQA--KIGLAQLKLQMEKIDEA 481

Query: 99  LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP 144
           +   + +  L     +              F +   +  + L+ +P
Sbjct: 482 IELFEDSAILARTMDE--------KLQATTFAEAAKI-QKRLRADP 518

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 64.7 bits (158), Expect = 6e-12
 Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 27/157 (17%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLK-----IKCADNDVNAQL-------YNNRA 86
            ++   K+ GN  FK   +  AI  YT+ L+        A++   A+L         N  
Sbjct: 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG 280

Query: 87  ASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
           A    + +++  +  C  AL++ P   K   R AQ    LK+++       +  +  P D
Sbjct: 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 340

Query: 147 STVIDLRTSCINKHKEILRNERKQAQQVKKEEKEKER 183
             +               + E  + +Q  K +K+KE+
Sbjct: 341 KAI---------------QAELLKVKQKIKAQKDKEK 362

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 17/138 (12%), Positives = 37/138 (26%), Gaps = 6/138 (4%)

Query: 33  LENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL 92
              + + L   Y   G   ++  K+ +A   +     +    +  +A+ +    A    L
Sbjct: 11  RGLSEDTLEQLYA-LGFNQYQAGKWDDAQKIFQALCML----DHYDARYFLGLGACRQSL 65

Query: 93  KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDL 152
             Y   L        +  + P+    AA+C   L   +                     L
Sbjct: 66  GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125

Query: 153 RTSCINKHKEILRNERKQ 170
                    E +   + +
Sbjct: 126 AARA-GAMLEAVTARKDR 142

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 55.2 bits (133), Expect = 1e-09
 Identities = 11/112 (9%), Positives = 29/112 (25%), Gaps = 5/112 (4%)

Query: 36  TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNY 95
             + +   Y       +   +   A + +          +  N       AA     + +
Sbjct: 32  PDDMMDDIYS-YAYDFYNKGRIEEAEVFFRFLCIY----DFYNVDYIMGLAAIYQIKEQF 86

Query: 96  RSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
           +       +A  L  +         QC   LK         + +++ +  + 
Sbjct: 87  QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.8 bits (137), Expect = 4e-09
 Identities = 13/125 (10%), Positives = 34/125 (27%), Gaps = 4/125 (3%)

Query: 23  EGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLY 82
           + + +L Y            +                   +Y   +       + ++ L 
Sbjct: 253 DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING----LEKSSDLL 308

Query: 83  NNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142
             +A + F    +   L      L++ P    V       L    +      + ++L+  
Sbjct: 309 LCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368

Query: 143 NPTDS 147
           +P  +
Sbjct: 369 HPEKA 373

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 53.3 bits (128), Expect = 6e-08
 Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 3/116 (2%)

Query: 48  GNFNFKCNKYRNAIINYTEGLKIKCADNDVN---AQLYNNRAASNFFLKNYRSCLTDCQI 104
           G   F  +  + AI ++   L +           A  + N   +   LK Y + +     
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541

Query: 105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH 160
            L L  +   V    A    H K          E L  +P +    DL    + ++
Sbjct: 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEEN 597

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.4 bits (110), Expect = 8e-06
 Identities = 11/89 (12%), Positives = 28/89 (31%)

Query: 68  LKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLK 127
                 ++    +       +    ++      D   ++        + L  A  LF   
Sbjct: 260 YSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319

Query: 128 KFEDCTHLCDELLKENPTDSTVIDLRTSC 156
           +F D   +  ++L+ +P +  V  L  + 
Sbjct: 320 RFIDVLAITTKILEIDPYNLDVYPLHLAS 348

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 14/109 (12%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 48  GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107
           G  + +      A         +       +  L N      F   + ++ +   Q AL 
Sbjct: 448 GMQHMQLGNILLANEYLQSSYAL----FQYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503

Query: 108 L-------KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV 149
           L       +  +             LK ++      ++ L  +  D+ V
Sbjct: 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 53.4 bits (128), Expect = 5e-09
 Identities = 15/141 (10%), Positives = 44/141 (31%), Gaps = 6/141 (4%)

Query: 33  LENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL 92
            E + + L   Y       ++   Y +A   +     +    +  +++ +    A    +
Sbjct: 14  NEISSDTLEQLYS-LAFNQYQSGXYEDAHXVFQALCVL----DHYDSRFFLGLGACRQAM 68

Query: 93  KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDL 152
             Y   +        +    P+    AA+CL    +  +         +         +L
Sbjct: 69  GQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128

Query: 153 RTSCINKHKEILRNERKQAQQ 173
            T  ++   E ++ +++   +
Sbjct: 129 STR-VSSMLEAIKLKKEMKHE 148

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 55.8 bits (134), Expect = 7e-09
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 6/130 (4%)

Query: 55  NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK 114
              + A+  Y +  K+    +  N  L+ NRA  + + ++Y   L     A  L P +P+
Sbjct: 235 KISQQALSAYAQAEKVDRKASS-NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE 293

Query: 115 VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQV 174
            + R  Q L  L +         +   +         +  S    H     + R Q+   
Sbjct: 294 PQQREQQLLEFLSRLTSLLESKGKTKPKKLQ-----SMLGSLRPAHLGPCGDGRYQSASG 348

Query: 175 KKEEKEKERV 184
           +K   E + +
Sbjct: 349 QKMTLELKPL 358

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 10/69 (14%), Positives = 28/69 (40%)

Query: 78  NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCD 137
           N  +  + A  +++  +++ C     + ++  P +          L  L K  +  +L  
Sbjct: 21  NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSH 80

Query: 138 ELLKENPTD 146
           +L+   P++
Sbjct: 81  KLVDLYPSN 89

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 4/107 (3%)

Query: 25  LQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNN 84
           L+++K    E T ++      + G+   K  KY  A+  + + L +       NA  Y+ 
Sbjct: 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL----IPQNASTYSA 275

Query: 85  RAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
               +  + N+ + +     AL L+ D          C+       +
Sbjct: 276 IGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.2 bits (121), Expect = 4e-07
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 4/107 (3%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
           A  Y + GN   +  + + AI +Y   L++K   + ++   Y N AA+     +    + 
Sbjct: 67  AEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDG--YINLAAALVAAGDMEGAVQ 122

Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
               AL+  PD   V+      L  L + E+      + ++  P  +
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA 169

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.1 bits (118), Expect = 9e-07
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 10/119 (8%)

Query: 28  LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAA 87
            + +P      +         + +F+C +   +    T  +K     N + A+ Y+N   
Sbjct: 26  WRQEP------DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGN 75

Query: 88  SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
                   +  +   + AL+LKPD+    +  A  L      E         L+ NP  
Sbjct: 76  VYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 134

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 11/108 (10%)

Query: 40  LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
           LA  Y ++G           AI  Y   ++++          Y N A +     +     
Sbjct: 243 LACVYYEQG-------LIDLAIDTYRRAIELQPH----FPDAYCNLANALKEKGSVAEAE 291

Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
                AL+L P +       A         E+   L  + L+  P  +
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA 339

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 10/122 (8%)

Query: 28  LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAA 87
           L+Y+P      +L     D GN      +   A   Y + ++ +  +    A  ++N   
Sbjct: 128 LQYNP------DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNF---AVAWSNLGC 177

Query: 88  SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
                      +   + A+ L P++    +     L   + F+         L  +P  +
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237

Query: 148 TV 149
            V
Sbjct: 238 VV 239

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 8/103 (7%), Positives = 28/103 (27%), Gaps = 4/103 (3%)

Query: 44  YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ 103
             +  +  ++   +  A  +  +  +        N  +    ++ +F  +          
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRRLDRSAHFST 57

Query: 104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
           +A+K  P   +             + ++        L+  P  
Sbjct: 58  LAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 11/108 (10%)

Query: 40  LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
           LA   K++G           A   Y   L++    +   A   NN A       N    +
Sbjct: 277 LANALKEKG-------SVAEAEDCYNTALRLC-PTH---ADSLNNLANIKREQGNIEEAV 325

Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
              + AL++ P++       A  L    K ++      E ++ +PT +
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 11/108 (10%)

Query: 40  LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
           L    K+          +  A+  Y   L +   ++   A ++ N A   +        +
Sbjct: 209 LGNVLKEAR-------IFDRAVAAYLRALSLS-PNH---AVVHGNLACVYYEQGLIDLAI 257

Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
              + A++L+P +P      A  L       +     +  L+  PT +
Sbjct: 258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 13/88 (14%), Positives = 31/88 (35%), Gaps = 11/88 (12%)

Query: 40  LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
           LA   +++G           A+  Y + L++        A  ++N A+        +  L
Sbjct: 311 LANIKREQG-------NIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEAL 359

Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLK 127
              + A+++ P +          L  ++
Sbjct: 360 MHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 1/91 (1%)

Query: 56  KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV 115
               A+  Y + +       D  A+ Y    ++   L  YR         +K  P++  +
Sbjct: 5   LEAQAVPYYEKAIASGLQGKD-LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
           ++  A  L++L ++E    L  +++ E   D
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 14/107 (13%), Positives = 35/107 (32%), Gaps = 4/107 (3%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
           +  ++  G    K  +   AI  Y   +      +     +Y    +  +   N+   + 
Sbjct: 74  SADFEYYGKILMKKGQDSLAIQQYQAAVDR----DTTRLDMYGQIGSYFYNKGNFPLAIQ 129

Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
             +  ++     PKV     Q  ++ K++        ++L+  P   
Sbjct: 130 YMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY 176

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 7/94 (7%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
                   +F FK N Y  AI  + +           +  +YN RA   + L  Y     
Sbjct: 3   DDVEFRYADFLFKNNNYAEAIEVFNKLEAK----KYNSPYIYNRRAVCYYELAKYDLAQK 58

Query: 101 DCQI---ALKLKPDYPKVKLRAAQCLFHLKKFED 131
           D +     +              + L    +   
Sbjct: 59  DIETYFSKVNATKAKSADFEYYGKILMKKGQDSL 92

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 4/91 (4%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
              Y   G++ +    +  AI    + ++      D     +     + ++ K Y    +
Sbjct: 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKV--FYELGQAYYYNKEYVKADS 163

Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
                L+LKP+     L  A+          
Sbjct: 164 SFVKVLELKPNIYIGYLWRARANAAQDPDTK 194

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 10/110 (9%), Positives = 26/110 (23%), Gaps = 7/110 (6%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIIN---YTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRS 97
              Y       ++  KY  A  +   Y   +          +  +               
Sbjct: 37  PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA----TKAKSADFEYYGKILMKKGQDSL 92

Query: 98  CLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
            +   Q A+        +  +     ++   F       ++ ++   TD 
Sbjct: 93  AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP 142

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 12/55 (21%), Positives = 20/55 (36%)

Query: 77  VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
           +N  +    A   F   NY   +         K + P +  R A C + L K++ 
Sbjct: 1   MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDL 55

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 10/81 (12%), Positives = 19/81 (23%), Gaps = 8/81 (9%)

Query: 40  LATTYKDEGNFNFKCNKYRNAIINYTEGLKIK----CADNDVNAQLYNNRAASNFFLKNY 95
            A     +        K   A   Y + +++         D   +     A      ++ 
Sbjct: 182 RARANAAQDPDT----KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237

Query: 96  RSCLTDCQIALKLKPDYPKVK 116
                  +  L L P   K  
Sbjct: 238 VKADAAWKNILALDPTNKKAI 258

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 13/107 (12%), Positives = 25/107 (23%), Gaps = 11/107 (10%)

Query: 40  LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
           LA      G             +    GL +         +         +  + +    
Sbjct: 29  LADAELGMG-------DTTAGEMAVQRGLALHPGH----PEAVARLGRVRWTQQRHAEAA 77

Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
              Q A    P++P + L     L    + E          +  P +
Sbjct: 78  VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 10/90 (11%), Positives = 28/90 (31%), Gaps = 4/90 (4%)

Query: 57  YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVK 116
               ++     ++ +  D       +   A +   + +  +     Q  L L P +P+  
Sbjct: 5   GPRELLQLRAAVRHRPQD----FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV 60

Query: 117 LRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
            R  +  +  ++  +   L  +     P  
Sbjct: 61  ARLGRVRWTQQRHAEAAVLLQQASDAAPEH 90

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 44.4 bits (106), Expect = 3e-06
 Identities = 7/58 (12%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 55  NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY 112
            +Y  A+  Y   + +   +++ N  ++  +A +  +++         +   KL+  +
Sbjct: 54  ERYEEAVDCYNYVINVI--EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 42.8 bits (102), Expect = 1e-05
 Identities = 12/108 (11%), Positives = 33/108 (30%), Gaps = 6/108 (5%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
              Y  EG   +    Y  +I  + + +++     +     +  +  + + L+ Y   + 
Sbjct: 6   PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKY--WLMKGKALYNLERYEEAVD 61

Query: 101 DCQIALKLKPDYPKVK--LRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
                + +  D          A  L +++  E    + +   K     
Sbjct: 62  CYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 75  NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
            D N + Y       +   NY   +   + A++L P+  K  L   + L++L+++E+
Sbjct: 2   VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEE 58

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 45.6 bits (109), Expect = 7e-06
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 10/104 (9%)

Query: 28  LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAA 87
           L+ D         AT Y   GN       Y+ A   + + L+      + +   +     
Sbjct: 84  LELDS------SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--MENGDL--FYMLGT 133

Query: 88  SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
               L+  +  L   Q A++L  +  + + +   CL +    ++
Sbjct: 134 VLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 4/84 (4%)

Query: 48  GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107
                +   Y  A   +T+ ++     N  +A  Y N A     +      L     AL+
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEE----NKEDAIPYINFANLLSSVNELERALAFYDKALE 85

Query: 108 LKPDYPKVKLRAAQCLFHLKKFED 131
           L          A       + +++
Sbjct: 86  LDSSAATAYYGAGNVYVVKEMYKE 109

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 4/91 (4%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
           A  Y +  N     N+   A+  Y + L++    +   A  Y          + Y+    
Sbjct: 57  AIPYINFANLLSSVNELERALAFYDKALELD--SSAATA--YYGAGNVYVVKEMYKEAKD 112

Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
             + AL+   +   +       L  L++ + 
Sbjct: 113 MFEKALRAGMENGDLFYMLGTVLVKLEQPKL 143

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 10/84 (11%), Positives = 22/84 (26%), Gaps = 4/84 (4%)

Query: 48  GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107
           G    K  + + A+      +++   +ND  A                   L+      +
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELN--ENDTEA--RFQFGMCLANEGMLDEALSQFAAVTE 187

Query: 108 LKPDYPKVKLRAAQCLFHLKKFED 131
             P +      A     + +  E 
Sbjct: 188 QDPGHADAFYNAGVTYAYKENREK 211

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 11/89 (12%), Positives = 24/89 (26%), Gaps = 11/89 (12%)

Query: 40  LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
                 +EG           A+  +    +        +A  + N   +  + +N    L
Sbjct: 165 FGMCLANEG-------MLDEALSQFAAVTEQD--PGHADA--FYNAGVTYAYKENREKAL 213

Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKK 128
                A+ ++PD+            H   
Sbjct: 214 EMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 46.7 bits (110), Expect = 8e-06
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 4/104 (3%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
           A  Y + GN   +    + A+  YT  ++I    N   A  ++N A+ +    N    + 
Sbjct: 77  ADAYSNMGNTLKEMQDVQGALQCYTRAIQI----NPAFADAHSNLASIHKDSGNIPEAIA 132

Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP 144
             + ALKLKPD+P      A CL  +  + D      +L+    
Sbjct: 133 SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 44.0 bits (103), Expect = 5e-05
 Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 11/105 (10%)

Query: 40  LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
           LA+  + +G       K + A+++Y E ++I    +   A  Y+N   +   +++ +  L
Sbjct: 49  LASVLQQQG-------KLQEALMHYKEAIRI----SPTFADAYSNMGNTLKEMQDVQGAL 97

Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP 144
                A+++ P +       A          +        LK  P
Sbjct: 98  QCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 11/108 (10%)

Query: 40  LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
           LA   +++G           A+  Y + L++        A  ++N A+        +  L
Sbjct: 15  LANIKREQG-------NIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEAL 63

Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
              + A+++ P +          L  ++  +         ++ NP  +
Sbjct: 64  MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFA 111

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 12/109 (11%), Positives = 34/109 (31%), Gaps = 7/109 (6%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
           A +  +EG        ++ A+  ++    +     D ++++  N       LKN      
Sbjct: 6   AISLWNEGVLAADKKDWKGALDAFS---AV----QDPHSRICFNIGCMYTILKNMTEAEK 58

Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV 149
               ++           +     +  +K++       E L +   +  +
Sbjct: 59  AFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI 107

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 19/116 (16%)

Query: 28  LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDV---------- 77
           +  D        LA  Y   G   ++  KY  AI +  E L     +  +          
Sbjct: 64  INRDK------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK 117

Query: 78  --NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL-RAAQCLFHLKKFE 130
               ++  N A      + ++       +A  +K +    K+ +A +C++  K +E
Sbjct: 118 LFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYE 173

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 9/127 (7%)

Query: 28  LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAA 87
              D  + T  +LAT +    +      K ++A   + E              L N +AA
Sbjct: 157 QDQDE-DATLTQLATAW---VSLAAGGEKLQDAYYIFQEMADK----CSPTLLLLNGQAA 208

Query: 88  SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHL-KKFEDCTHLCDELLKENPTD 146
            +     + +     Q AL     +P+  +       HL K  E       +L   + + 
Sbjct: 209 CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268

Query: 147 STVIDLR 153
             + + R
Sbjct: 269 PFIKEYR 275

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 14/60 (23%), Positives = 22/60 (36%)

Query: 56  KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV 115
           +    +    + L  +   +D  AQL   R      L        D   AL ++PD P+V
Sbjct: 20  QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 79

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 4/109 (3%)

Query: 38  EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRS 97
           +E A    + G           A  ++++ L I+   +      +N          N+ +
Sbjct: 40  DERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEV--FNYLGIYLTQAGNFDA 95

Query: 98  CLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
                   L+L P Y    L     L++  + +          +++P D
Sbjct: 96  AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 12/91 (13%), Positives = 25/91 (27%), Gaps = 11/91 (12%)

Query: 40  LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
           L       G        +  A   +   L++        A  + NR  + ++    +   
Sbjct: 83  LGIYLTQAG-------NFDAAYEAFDSVLELD--PTYNYA--HLNRGIALYYGGRDKLAQ 131

Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFE 130
            D     +  P+ P   L        L + +
Sbjct: 132 DDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQ 162

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 11/118 (9%), Positives = 25/118 (21%), Gaps = 5/118 (4%)

Query: 33  LENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL 92
              TP++        G         +  +    +   +             +       L
Sbjct: 303 HGLTPQQ-VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ----VVAIASHDGGKQAL 357

Query: 93  KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVI 150
           +  +  L     A  L P+              L+  +    +  +     P     I
Sbjct: 358 ETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAI 415

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 15/114 (13%), Positives = 24/114 (21%), Gaps = 5/114 (4%)

Query: 33  LENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL 92
              TPE+        G         +  +    +   +      V A    +       L
Sbjct: 371 HGLTPEQ-VVAIASNGGGKQALETVQRLLPVLCQAHGLT--PEQVVA--IASHDGGKQAL 425

Query: 93  KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
           +  +  L     A  L P               L+         D  L     D
Sbjct: 426 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTND 479

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 11/114 (9%), Positives = 24/114 (21%), Gaps = 5/114 (4%)

Query: 33  LENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL 92
              TP+                   +  +    +   +      V A    +       L
Sbjct: 337 HGLTPQ-QVVAIASHDGGKQALETVQRLLPVLCQAHGLT--PEQVVA--IASNGGGKQAL 391

Query: 93  KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
           +  +  L     A  L P+              L+  +    +  +     P  
Sbjct: 392 ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 445

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 9/99 (9%), Positives = 19/99 (19%), Gaps = 5/99 (5%)

Query: 33  LENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL 92
              TPE+                  +  +    +   +             +       L
Sbjct: 133 HGLTPEQ-VVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ----VVAIASNGGGKQAL 187

Query: 93  KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
           +  +  L     A  L P               L+  + 
Sbjct: 188 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQR 226

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 8/106 (7%), Positives = 20/106 (18%), Gaps = 4/106 (3%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
                  G         +  +    +   +             + +     L+  +  L 
Sbjct: 242 VVAIASNGGGKQALETVQRLLPVLCQAHGL---TPQ-QVVAIASNSGGKQALETVQRLLP 297

Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
               A  L P               L+  +    +  +     P  
Sbjct: 298 VLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 343

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 28/168 (16%)

Query: 184 VLQIIRERKIKLATSGKGDLKSFSDLEPN------FPEITLRPVHTDDNDRLVWPVLFLY 237
           +L +  +  +        D K   D+  +         I +         RL W  L   
Sbjct: 21  ILSVFEDAFVD-----NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW-TLLSK 74

Query: 238 PEYRITDFVQEFHEDVTFDSMLEEMFSES--PGWDEDRKYVPGRLSIYYQDPNGKP---Q 292
            E  +  FV+E      +  ++  + +E   P       Y+  R  +Y  +         
Sbjct: 75  QEEMVQKFVEEVLRI-NYKFLMSPIKTEQRQPSMMTRM-YIEQRDRLYNDNQVFAKYNVS 132

Query: 293 RVPTTSTLGEVLTN--P-KYVIQAGTPGF--SILVA----DSKEEAQF 331
           R+     L + L    P K V+  G  G   + +        K + + 
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 50/355 (14%), Positives = 90/355 (25%), Gaps = 123/355 (34%)

Query: 16  EEMSPLVEGLQQLKYDPLENTPEE--------------LAT----TYKDEGNFNFK---- 53
           +    L + L +L+       P +              +A     +YK +   +FK    
Sbjct: 135 QPYLKLRQALLELR-------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 54  ----CNKYRNAIINYTEGL--KIKCADNDVNAQLYNNRAASN---------FFLKNYRSC 98
               CN     ++   + L  +I       +    N +   +            K Y +C
Sbjct: 188 NLKNCNS-PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 99  L----------------TDCQI---------ALKLKPDYPK-VKLRAAQCLFHLKK---- 128
           L                  C+I            L       + L          +    
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 129 FEDCTHL-CDEL----LKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKEKER 183
                     +L    L  NP        R S I    E +R+        K    +K  
Sbjct: 307 LLKYLDCRPQDLPREVLTTNP-------RRLSII---AESIRDGLATWDNWKHVNCDK-- 354

Query: 184 VLQIIRERKIKLATSGKGDLKS-FSDLE--P---NFPEITLRPVHTDDNDRLVWPVLFLY 237
            L  I E  + +      + +  F  L   P   + P I L          L+W  +   
Sbjct: 355 -LTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILL---------SLIWFDV--- 399

Query: 238 PEYRITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNGKPQ 292
            +  +   V + H+     S++E+         E    +P            +  
Sbjct: 400 IKSDVMVVVNKLHK----YSLVEK------QPKESTISIPSIYLELKVKLENEYA 444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 25/177 (14%), Positives = 53/177 (29%), Gaps = 18/177 (10%)

Query: 40  LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
           LA       N+       +NAI    + +++   +  +   L           +      
Sbjct: 178 LAIASYRLDNWP----PSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGE 233

Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159
              + AL+  P    V   AA+      + +    L  + L+  P ++ +          
Sbjct: 234 KLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL---------- 283

Query: 160 HKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKLATSGKGDLKSFSDLEPNFPEI 216
           H +I    R +  QV    +         + + ++L       LK   +   N   +
Sbjct: 284 HCQIGCCYRAKVFQVMNLRENGMY----GKRKLLELIGHAVAHLKKADEANDNLFRV 336

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 2/113 (1%)

Query: 16  EEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN 75
                + E L+ ++    + T      +    G + F   +Y  AI  Y E  K     +
Sbjct: 76  GNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVS 135

Query: 76  DV--NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHL 126
           D    A+ +   A + + +K     +     AL +  ++P   +R  Q LF +
Sbjct: 136 DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 42.4 bits (101), Expect = 5e-05
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 4/91 (4%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
              Y+D+G  + K  +Y  A++   +         DV+     +   +            
Sbjct: 8   QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDV--ALHLGIAYVKTGAVDRGTE 63

Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
             + +L   PD  KV          ++K++ 
Sbjct: 64  LLERSLADAPDNVKVATVLGLTYVQVQKYDL 94

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 11/120 (9%), Positives = 31/120 (25%), Gaps = 11/120 (9%)

Query: 28  LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAA 87
           L+  P            +          + ++A+  Y + L++       N         
Sbjct: 81  LQKAP------NNVDCLEACAEMQVCRGQEKDALRMYEKILQL----EADNLAANIFLGN 130

Query: 88  SNFF-LKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
             +   +  +  L      L         + R         ++E   +   +++   P+ 
Sbjct: 131 YYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 11/93 (11%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
           ELA  YK   N       Y  A + Y E L+     N+V+       A         +  
Sbjct: 59  ELALAYKKNRN-------YDKAYLFYKELLQKA--PNNVDC--LEACAEMQVCRGQEKDA 107

Query: 99  LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
           L   +  L+L+ D     +      +   + E 
Sbjct: 108 LRMYEKILQLEADNLAANIFLGNYYYLTAEQEK 140

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 10/113 (8%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 47  EGNFNFKCNKYRNAIINYTEGLKIK------------CADNDVNAQLYNNRAASNFFLKN 94
           + +   +  +   A+  + + + +               +++++++L    A +    +N
Sbjct: 10  KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69

Query: 95  YRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
           Y       +  L+  P+        A+      + +D   + +++L+    + 
Sbjct: 70  YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 2/115 (1%)

Query: 14  EGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKI--K 71
             EE   L + L ++       T           G +     +Y +AI  + +       
Sbjct: 76  RIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIF 135

Query: 72  CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHL 126
             D    A+ +   + S +++K     +   + A ++  ++    +R  QC    
Sbjct: 136 VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 39.7 bits (94), Expect = 2e-04
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
           A  + + GN  +K   Y  AI  Y + L++        A  + N   + +   +Y   + 
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEA--WYNLGNAYYKQGDYDEAIE 56

Query: 101 DCQIALKLKPDYPK 114
             Q AL+L P   +
Sbjct: 57  YYQKALELDPRSAE 70

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 12/92 (13%)

Query: 40  LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
               Y   G       +   A  +  + L ++    D   ++ +  A     +      L
Sbjct: 124 RGLVYALLG-------ERDKAEASLKQALALE----D-TPEIRSALAELYLSMGRLDEAL 171

Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
                AL+  P    +++R A  L    K E+
Sbjct: 172 AQYAKALEQAPKDLDLRVRYASALLLKGKAEE 203

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 38.1 bits (90), Expect = 7e-04
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 37  PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYR 96
           P   A  + + GN  +K   Y  AI  Y + L++    N+  A  + N   + +   +Y 
Sbjct: 5   PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEA--WYNLGNAYYKQGDYD 60

Query: 97  SCLTDCQIALKLKPDYPK 114
             +   Q AL+L P+  +
Sbjct: 61  EAIEYYQKALELDPNNAE 78

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	337
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.88
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.83
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.82
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.8
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.78
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.76
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.75
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.74
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.74
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.73
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.72
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.71
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.69
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.68
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.68
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.68
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.64
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.64
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.63
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.63
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.63
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.63
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.63
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.62
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.62
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.62
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.62
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.62
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.61
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.6
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.6
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.59
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.58
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.58
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.56
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.56
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.55
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.54
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.53
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.53
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.51
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.51
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.48
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.48
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.48
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.47
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.46
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.46
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.45
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.44
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.44
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.44
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.44
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.43
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.43
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.42
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.42
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.41
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.41
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.41
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.4
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.4
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.4
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.39
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.39
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.39
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.39
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.39
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.38
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.38
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.38
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.38
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.38
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.38
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.37
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.37
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.37
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.37
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.37
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.36
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.36
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.35
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.33
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.32
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.31
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.3
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.3
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.29
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.29
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.29
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.29
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.29
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.28
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.28
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.28
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.27
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.27
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.26
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.26
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.26
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.24
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.24
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.24
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.23
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.22
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.21
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.2
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.19
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.19
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.19
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.19
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.18
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.16
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.16
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.16
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.15
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.15
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.15
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.15
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.14
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.14
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.13
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.12
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.11
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.11
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.11
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.1
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.1
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.1
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.09
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.09
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.08
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.07
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.07
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.07
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.05
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.05
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.04
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.03
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.02
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.02
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.02
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.02
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.01
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.01
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.01
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.0
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.0
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.0
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.0
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.99
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.99
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.98
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.97
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.95
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.94
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.94
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.93
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.93
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.93
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.92
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.92
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.92
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.92
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.9
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.9
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.88
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.88
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.88
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.87
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.85
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.84
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.83
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.82
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.82
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.8
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.78
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.78
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.76
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.74
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.73
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.73
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.71
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.7
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.69
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.68
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.6
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.59
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.57
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.46
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.44
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.38
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.36
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.35
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.28
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.24
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.19
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.15
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.11
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.09
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.08
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.07
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.06
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.05
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.03
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.97
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.97
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.95
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.9
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.87
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.86
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.65
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.57
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.54
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.45
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.31
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.18
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.18
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.11
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.07
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.04
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.42
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.38
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.16
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.08
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.48
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	94.1
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.02
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.97
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.84
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	93.7
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.54
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.92
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	92.17
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	91.7
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	90.59
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	89.87
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	88.73
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	88.62
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	87.98
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.27
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	84.12
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	83.83
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	83.0
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	82.99
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	82.66
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	81.45
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	81.39
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	80.62

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.88  E-value=6.6e-22  Score=159.54  Aligned_cols=114  Identities=30%  Similarity=0.519  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      +.|+.++++|+.+++.|+|++|+.+|++||+.+|.    .+.+|.|+|.|+.++|++.+|+.+|++||+++|++.++|++
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~   86 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE----NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR   86 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            89999999999999999999999999999999998    56999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      +|.++..+|++++|+.+|+++++++|+|..+...++.+
T Consensus        87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            99999999999999999999999999999998887765

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.83  E-value=7.4e-20  Score=152.55  Aligned_cols=125  Identities=18%  Similarity=0.235  Sum_probs=110.9

Q ss_pred             ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc--------ccCC------chHHHHHHHHHHHHHHHccCHHHHHHH
Q psy5660          36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKI--------KCAD------NDVNAQLYNNRAASNFFLKNYRSCLTD  101 (337)
Q Consensus        36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~--------~p~~------~~~~~~~~~nra~~~~~lg~~~~Al~d  101 (337)
                      +..+.+..+++.|+.+++.|+|++|+.+|++||..        .|.+      ......+|+|+|.|++++|+|.+|+.+
T Consensus         6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~   85 (162)
T 3rkv_A            6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET   85 (162)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            44578999999999999999999999999999998        2221      122778999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHH
Q psy5660         102 CQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS-TVIDLRTSCINKH  160 (337)
Q Consensus       102 ~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~-~~~~~l~~~~~~~  160 (337)
                      |++||+++|+++++|+++|.++..+|++++|+.+|+++++++|++. .+...+..+..+.
T Consensus        86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  145 (162)
T 3rkv_A           86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR  145 (162)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998 6677777776543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.82  E-value=4.7e-20  Score=154.27  Aligned_cols=121  Identities=13%  Similarity=0.050  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc--------hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN--------DVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL--  108 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~--------~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l--  108 (337)
                      ..|..+++.||.+++.|+|++|+.+|++||+++|+++        ...+.+|+|+|.|+.++|+|++|+.+|++||++  
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            5688999999999999999999999999999999832        124569999999999999999999999999999  


Q ss_pred             -----CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         109 -----KPDYPKVK----LRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       109 -----~P~~~ka~----~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                           +|++.++|    +++|.++..+|++++|+.+|+++++++|++..+...+..+.+.
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~  148 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV  148 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence                 99999999    9999999999999999999999999999998776666665443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.80  E-value=6.7e-19  Score=141.80  Aligned_cols=109  Identities=22%  Similarity=0.375  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY-----  112 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~-----  112 (337)
                      .+.|.++++.||.+++.|+|++|+.+|++||+++|+    .+.+|.|+|.|++++|+|++|+.+|++||+++|++     
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~----~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~   80 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS----NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK   80 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH
Confidence            478999999999999999999999999999999998    56899999999999999999999999999999876     


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660         113 --PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVID  151 (337)
Q Consensus       113 --~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~  151 (337)
                        .++|+++|.++..+|++++|+.+|+++++++|+ ++...
T Consensus        81 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~  120 (127)
T 4gcn_A           81 LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVK  120 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHH
Confidence              368999999999999999999999999999885 44433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.78  E-value=5.6e-18  Score=134.78  Aligned_cols=116  Identities=22%  Similarity=0.321  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ..+..+.+.|+.+++.|+|++|+..|+++++.+|+    ...+|.|+|.|+.++|+|++|+.++++|++++|++..++++
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   77 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR   77 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            57889999999999999999999999999999998    56999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKEN------PTDSTVIDLRTSCIN  158 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~------P~~~~~~~~l~~~~~  158 (337)
                      +|.++..+|++++|+.+++++++++      |++..+...+..+..
T Consensus        78 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           78 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            9999999999999999999999999      999888888877754

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.76  E-value=1.5e-17  Score=138.65  Aligned_cols=111  Identities=9%  Similarity=0.036  Sum_probs=105.1

Q ss_pred             ccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy5660          27 QLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL  106 (337)
Q Consensus        27 aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al  106 (337)
                      ++..+|      +.+..+...|..+++.|+|++|+.+|++++..+|.    ++.+|.|+|.|+..+|+|++|+..|++|+
T Consensus        28 al~l~p------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~----~~~~~~~lg~~~~~~g~~~~Ai~~~~~al   97 (151)
T 3gyz_A           28 INAIPD------DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY----NVDYIMGLAAIYQIKEQFQQAADLYAVAF   97 (151)
T ss_dssp             GCCSCH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhCCCH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            455555      88999999999999999999999999999999999    56899999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660         107 KLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS  147 (337)
Q Consensus       107 ~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~  147 (337)
                      +++|+++.+++++|.|+..+|++++|+.+|++++++.|++.
T Consensus        98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999999999999864

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.75  E-value=3.4e-17  Score=136.59  Aligned_cols=112  Identities=22%  Similarity=0.291  Sum_probs=105.9

Q ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q psy5660          35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK  114 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k  114 (337)
                      +.....+..+...|+.+++.|+|++|+.+|+++++.+|.    ...+|.++|.|++.+|+|++|+.++++|++++|++..
T Consensus         5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~   80 (164)
T 3sz7_A            5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA----NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK   80 (164)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            344488999999999999999999999999999999998    5689999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660         115 VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVI  150 (337)
Q Consensus       115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~  150 (337)
                      +++++|.++..+|++++|+.+|+++++++|++..+.
T Consensus        81 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  116 (164)
T 3sz7_A           81 AWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA  116 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence            999999999999999999999999999999998743

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.74  E-value=3.4e-17  Score=135.37  Aligned_cols=126  Identities=9%  Similarity=0.088  Sum_probs=114.7

Q ss_pred             HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660          24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ  103 (337)
Q Consensus        24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~  103 (337)
                      .-+++..+|      +.+..+...|..++..|+|++|+..|++++..+|.    +..+|.++|.|+..+|+|++|+..++
T Consensus        10 ~~~al~~~p------~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~   79 (148)
T 2vgx_A           10 IAMLNEISS------DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY----DSRFFLGLGACRQAMGQYDLAIHSYS   79 (148)
T ss_dssp             HHHHTTCCH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHcCCH------hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc----cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            345566666      78899999999999999999999999999999998    56899999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       104 ~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +|+.++|+++.+++.+|.++..+|++++|+.+|+++++++|+++.....+.++...
T Consensus        80 ~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  135 (148)
T 2vgx_A           80 YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSM  135 (148)
T ss_dssp             HHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988776666655544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.74  E-value=5.9e-17  Score=132.21  Aligned_cols=125  Identities=11%  Similarity=0.093  Sum_probs=113.7

Q ss_pred             hhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660          25 LQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQI  104 (337)
Q Consensus        25 lqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~  104 (337)
                      -+++..+|      +.+..+...|..+++.|+|++|+..|++++..+|.    +..+|.++|.|+..+|+|++|+..+++
T Consensus         8 ~~al~~~p------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~   77 (142)
T 2xcb_A            8 AMLRGLSE------DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY----DARYFLGLGACRQSLGLYEQALQSYSY   77 (142)
T ss_dssp             -CCTTCCH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHcCCH------HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc----cHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            34565665      77889999999999999999999999999999998    568999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       105 Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      |+.++|+++.+++.+|.++..+|++++|+.+|+++++++|+++.......++...
T Consensus        78 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  132 (142)
T 2xcb_A           78 GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM  132 (142)
T ss_dssp             HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred             HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998777766666544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.73  E-value=2.8e-17  Score=135.96  Aligned_cols=116  Identities=10%  Similarity=0.079  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      +.+..+...|+.+++.|+|++|+.+|+++|+++|+    ++.+|.++|.|+..+|++++|+..+++|++++|+++.++++
T Consensus        29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  104 (150)
T 4ga2_A           29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER----DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLK  104 (150)
T ss_dssp             HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHH
Confidence            78888999999999999999999999999999999    56899999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHL-CDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~-~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      +|.++..+|++++|... ++++++++|+|+.+..++.++..
T Consensus       105 la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~  145 (150)
T 4ga2_A          105 IAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD  145 (150)
T ss_dssp             HHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            99999999999887765 59999999999999888776643

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.72  E-value=2.9e-16  Score=147.14  Aligned_cols=123  Identities=20%  Similarity=0.304  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc-----------hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN-----------DVNAQLYNNRAASNFFLKNYRSCLTDCQIALK  107 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~-----------~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~  107 (337)
                      ..+..+.+.|+.+++.|+|++|+.+|++|+.+.|.+.           .....+|.|+|.|++++|+|++|+.+|++|++
T Consensus       145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  224 (336)
T 1p5q_A          145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE  224 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999999852           22368999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy5660         108 LKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHK  161 (337)
Q Consensus       108 l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~  161 (337)
                      ++|++.++++++|.++..+|++++|+.+|+++++++|++..+...++.+.....
T Consensus       225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~  278 (336)
T 1p5q_A          225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  278 (336)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988888876533

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.71  E-value=2.3e-16  Score=154.07  Aligned_cols=123  Identities=24%  Similarity=0.318  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc-----------hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN-----------DVNAQLYNNRAASNFFLKNYRSCLTDCQIALK  107 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~-----------~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~  107 (337)
                      ..+..++++|+.+++.|+|.+|+.+|++|+++.|.+.           .....+|.|+|.|++++|+|++|+.+|++||+
T Consensus       266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  345 (457)
T 1kt0_A          266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG  345 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            6788999999999999999999999999999999862           23478999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy5660         108 LKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHK  161 (337)
Q Consensus       108 l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~  161 (337)
                      ++|++.++|+++|.++..+|++++|+.+|+++++++|++..+...+..+.....
T Consensus       346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~  399 (457)
T 1kt0_A          346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK  399 (457)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred             cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999888888776543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.69  E-value=1.2e-15  Score=131.16  Aligned_cols=124  Identities=21%  Similarity=0.234  Sum_probs=113.5

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCch------------HHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADND------------VNAQLYNNRAASNFFLKNYRSCLTDCQI  104 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~------------~~~~~~~nra~~~~~lg~~~~Al~d~~~  104 (337)
                      ..+.+..+...|+.+++.|+|++|+..|.+++...|.++.            +...++.|+|.|++.+|+|++|+.+|++
T Consensus        34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  113 (198)
T 2fbn_A           34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK  113 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3467889999999999999999999999999999887541            1248999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660         105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH  160 (337)
Q Consensus       105 Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~  160 (337)
                      |++++|.+.++++++|.++..+|++++|+.+|+++++++|++..+...+..+....
T Consensus       114 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  169 (198)
T 2fbn_A          114 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  169 (198)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988888876543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.68  E-value=1.1e-15  Score=145.44  Aligned_cols=124  Identities=21%  Similarity=0.232  Sum_probs=111.6

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC------------CchHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA------------DNDVNAQLYNNRAASNFFLKNYRSCLTDCQI  104 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~------------~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~  104 (337)
                      ..+.+..++..|+.+++.|+|++|+.+|++|++..+.            .......+|.|+|.|++++|+|++|+.+|++
T Consensus       219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  298 (370)
T 1ihg_A          219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE  298 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            4567889999999999999999999999999993222            1123789999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660         105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH  160 (337)
Q Consensus       105 Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~  160 (337)
                      |++++|++.++++++|.++..+|++++|+.+|+++++++|++..+...+..+....
T Consensus       299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~  354 (370)
T 1ihg_A          299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  354 (370)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988888776553

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.68  E-value=1.4e-15  Score=156.38  Aligned_cols=116  Identities=13%  Similarity=0.121  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      +.+.++.+.|+.+.++|+|++|+.+|++||+++|+    .+.+|.|+|.++.++|++++|+..+++|++++|++..+|++
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~----~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n   82 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE----FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN   82 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            44555555555555555555555555555555554    33455555555555555555555555555555555555555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      +|.++..+|++++|+++|+++++++|++..+...++.+..
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~  122 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK  122 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            5555555555555555555555555555555554444443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.68  E-value=7.9e-16  Score=123.23  Aligned_cols=117  Identities=21%  Similarity=0.274  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ..+..+...|+.++..|+|++|+.+|++++...|.    ...+|.++|.|+..+|++++|+..+++|++++|++..+++.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            45788999999999999999999999999999998    56899999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPT-----DSTVIDLRTSCINK  159 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~-----~~~~~~~l~~~~~~  159 (337)
                      +|.++..+|++++|+.+|+++++++|+     +..+...+..+..+
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~  128 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK  128 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988     67777766666543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.64  E-value=3.9e-15  Score=153.13  Aligned_cols=126  Identities=16%  Similarity=0.191  Sum_probs=118.7

Q ss_pred             HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660          24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ  103 (337)
Q Consensus        24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~  103 (337)
                      .-++|..+|      +.+..+.+.|+.+.+.|++++|+.+|++||+++|+    .+.+|.|+|.++..+|++++|+..++
T Consensus        32 ~~kAl~l~P------~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~----~~~a~~nLg~~l~~~g~~~~A~~~~~  101 (723)
T 4gyw_A           32 YRKALEVFP------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT----FADAYSNMGNTLKEMQDVQGALQCYT  101 (723)
T ss_dssp             HHHHHHHCS------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            345688888      66889999999999999999999999999999999    66999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       104 ~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +|++++|++..+|+++|.++..+|++++|+.+|+++++++|++..+...++.+...
T Consensus       102 kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~  157 (723)
T 4gyw_A          102 RAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI  157 (723)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh
Confidence            99999999999999999999999999999999999999999999999988888765

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.64  E-value=8.4e-15  Score=112.85  Aligned_cols=114  Identities=25%  Similarity=0.351  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .+..+...|+.++..|+|++|+.+|.+++...|.    ...++.++|.++..+|++.+|+..++++++++|.+..+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   78 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH----NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK   78 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC----cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            5778999999999999999999999999999998    458999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      |.++..+|++++|+.+++++++++|++..+...+..+.
T Consensus        79 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           79 AAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            99999999999999999999999999998887776664

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.63  E-value=1.2e-14  Score=126.26  Aligned_cols=115  Identities=9%  Similarity=0.063  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHH----------------HHHHHHHccCHHHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNN----------------RAASNFFLKNYRSCLTDCQ  103 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~n----------------ra~~~~~lg~~~~Al~d~~  103 (337)
                      .+..+..+|..++..|+|++|+.+|++++..+|+    ++.+|.+                +|.++.++|++++|+..++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~   78 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID----RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK   78 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH----HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4677889999999999999999999999999998    6677888                9999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       104 ~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      +|++++|++..+++.+|.++..+|++++|+.+|+++++++|++..+...++.+..
T Consensus        79 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           79 ELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY  133 (208)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999888887753

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.63  E-value=8.3e-15  Score=128.20  Aligned_cols=123  Identities=12%  Similarity=0.025  Sum_probs=101.4

Q ss_pred             hccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc-----------cC
Q psy5660          26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL-----------KN   94 (337)
Q Consensus        26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l-----------g~   94 (337)
                      +++..+|      ..+..+...|..+.+.|++++|+..|+++++++|+    ...++.++|.++..+           |+
T Consensus        30 ~al~~~p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~~~~~~~~~~~~g~   99 (217)
T 2pl2_A           30 RALKENP------QDPEALYWLARTQLKLGLVNPALENGKTLVARTPR----YLGGYMVLSEAYVALYRQAEDRERGKGY   99 (217)
T ss_dssp             HHHTTSS------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred             HHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHhhhhhhhhcccccC
Confidence            3566676      56777888888888888888888888888888887    457888888888888           88


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660          95 YRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus        95 ~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +++|+..+++|++++|++..+++.+|.++..+|++++|+.+|+++++++ ++..+...++.+...
T Consensus       100 ~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~  163 (217)
T 2pl2_A          100 LEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLS  163 (217)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888 788887777776554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.63  E-value=3.7e-15  Score=142.43  Aligned_cols=125  Identities=11%  Similarity=0.111  Sum_probs=103.8

Q ss_pred             hhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccC-HHHHHHHHH
Q psy5660          25 LQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKN-YRSCLTDCQ  103 (337)
Q Consensus        25 lqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~-~~~Al~d~~  103 (337)
                      +.+|.++|      ..+..+...|..+.+.|++++|+..|+++|.++|+    +..+|.+||.++..+|+ +++|+.+++
T Consensus        87 ~~ai~~~p------~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~----~~~a~~~~g~~l~~~g~d~~eAl~~~~  156 (382)
T 2h6f_A           87 VVQIIYSD------KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA----NYTVWHFRRVLLKSLQKDLHEEMNYIT  156 (382)
T ss_dssp             SSEECCCH------HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             chhhhCCh------hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc----CHHHHHHHHHHHHHcccCHHHHHHHHH
Confidence            45666666      77888888888888888888888888888888888    56888888888888886 888888888


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       104 ~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +||+++|++..+|+++|.++..+|++++|+.+|+++++++|++..+...++.+...
T Consensus       157 ~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~  212 (382)
T 2h6f_A          157 AIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE  212 (382)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888777777655

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.63  E-value=1e-14  Score=127.68  Aligned_cols=116  Identities=13%  Similarity=0.093  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .+..+...|..+++.|++++|+..|+++++.+|+    +..++.++|.++..+|++++|+..+++|++++|++..+++.+
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l   79 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ----DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL   79 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            3567889999999999999999999999999999    568999999999999999999999999999999999999999


Q ss_pred             HHHHHhc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         120 AQCLFHL-----------KKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       120 a~a~~~l-----------g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      |.++..+           |++++|+..++++++++|++..+...++.+...
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~  130 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL  130 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            9999999           999999999999999999999999888887665

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.63  E-value=2.1e-15  Score=124.63  Aligned_cols=109  Identities=10%  Similarity=-0.029  Sum_probs=100.5

Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q psy5660          47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHL  126 (337)
Q Consensus        47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~l  126 (337)
                      .|+.+..+|++++|+..|.+++...|.    .+..++++|.+|+++|+|++|+..+++|++++|+++.+|+.+|.++..+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~----~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~   78 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQ----KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE   78 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHH----HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            578888899999999999999999887    7788999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         127 KKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       127 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      |++++|+.+|+++++++|++..+...++.+...
T Consensus        79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  111 (150)
T 4ga2_A           79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCK  111 (150)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998887655

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.62  E-value=2.3e-15  Score=143.90  Aligned_cols=124  Identities=15%  Similarity=0.112  Sum_probs=117.2

Q ss_pred             hccccCCCCCChHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660          26 QQLKYDPLENTPEELATTYKDEGNFNFKCNK-YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQI  104 (337)
Q Consensus        26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~-y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~  104 (337)
                      ++|..+|      ..+..+..+|..+...|+ +++|+.+|+++|.++|+    +..+|+|||.++..+|++.+|+.+|++
T Consensus       122 ~al~l~P------~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~----~~~a~~~~g~~~~~~g~~~eAl~~~~k  191 (382)
T 2h6f_A          122 DAIELNA------ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK----NYQVWHHRRVLVEWLRDPSQELEFIAD  191 (382)
T ss_dssp             HHHHHCT------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred             HHHHhCc------cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            3567787      678899999999999997 99999999999999999    669999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       105 Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ||+++|++..+|+.+|.++..+|++++|+.+|+++++++|++..+...++.+...
T Consensus       192 al~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          192 ILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999888765

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.62  E-value=6.8e-14  Score=114.88  Aligned_cols=118  Identities=26%  Similarity=0.337  Sum_probs=110.0

Q ss_pred             ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660          36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV  115 (337)
Q Consensus        36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka  115 (337)
                      +..+.+..+...|+.++..|+|+.|+..|.+++...|.    ...++.++|.++..+|++.+|+..++++++++|.+..+
T Consensus         8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   83 (166)
T 1a17_A            8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS----NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG   83 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence            34578999999999999999999999999999999998    56899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660         116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus       116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      ++.+|.++..+|++++|+.+++++++++|++..+...+..+.
T Consensus        84 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~  125 (166)
T 1a17_A           84 YYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  125 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999988876665553

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=1.9e-14  Score=115.98  Aligned_cols=118  Identities=23%  Similarity=0.316  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ..+..+...|..++..|+|++|+.+|+++++..|++ .....++.++|.++..+|+|++|+..++++++++|.+..+++.
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP-QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            567889999999999999999999999999999862 1237899999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      +|.++..+|++++|+.+++++++++|++..+...+..+.
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            999999999999999999999999999998887776653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.62  E-value=7.1e-16  Score=144.71  Aligned_cols=121  Identities=22%  Similarity=0.223  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCch-------------HHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADND-------------VNAQLYNNRAASNFFLKNYRSCLTDCQI  104 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~-------------~~~~~~~nra~~~~~lg~~~~Al~d~~~  104 (337)
                      .+.+..++++|+.+++.|+|.+|+.+|++|+...|.+..             +...+|.|+|.|++++|+|.+|+.+|++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            467899999999999999999999999999999886320             0114899999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       105 Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      ||+++|++.++++++|.++..+|++++|+.+|+++++++|++..+...+..+..
T Consensus       256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~  309 (338)
T 2if4_A          256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE  309 (338)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998888777643

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.62  E-value=1.6e-15  Score=120.81  Aligned_cols=103  Identities=11%  Similarity=0.009  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ  121 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~  121 (337)
                      ..+...|..+++.|++++|+..|.++++.+|+    +..+|.++|.++..+|++++|+..+++|++++|++..+++.+|.
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~   93 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV   93 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34678999999999999999999999999999    56899999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCHH
Q psy5660         122 CLFHLKKFEDCTHLCDELLKENPTDST  148 (337)
Q Consensus       122 a~~~lg~~~eA~~~~~~al~l~P~~~~  148 (337)
                      ++..+|++++|+.+++++++++|++..
T Consensus        94 ~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           94 SHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999999999998754

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.61  E-value=1.3e-14  Score=114.61  Aligned_cols=119  Identities=28%  Similarity=0.423  Sum_probs=110.4

Q ss_pred             ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660          36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV  115 (337)
Q Consensus        36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka  115 (337)
                      .....+..+...|+.++..|+|++|+.+|.+++...|.    ...++.++|.++..+|++++|+..++++++++|.+..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   86 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK----DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG   86 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT----CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHH
Confidence            33477899999999999999999999999999999998    46899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      ++.+|.++..+|++++|+.+++++++++|++..+...++.+..
T Consensus        87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  129 (133)
T 2lni_A           87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM  129 (133)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            9999999999999999999999999999999888777766643

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.60  E-value=8.9e-14  Score=117.16  Aligned_cols=113  Identities=12%  Similarity=0.049  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .+..|.+.|+.+++.|+|++|+.+|+++++++|+    +..++.++|.++.++|++++|+..+.+++..+|++..++...
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   79 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN----NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYIL   79 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHH
Confidence            4556666777777777777777777777777766    345566666666666666666655555555555555554444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      |.++...++++.|...+.++++++|++..+...++.+
T Consensus        80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~  116 (184)
T 3vtx_A           80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLV  116 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            4444444444444444444444444444444444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.60  E-value=8.3e-14  Score=109.02  Aligned_cols=119  Identities=26%  Similarity=0.338  Sum_probs=110.9

Q ss_pred             ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660          36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV  115 (337)
Q Consensus        36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka  115 (337)
                      .....+..+...|..++..|+++.|+..|.+++...|.    ...++.++|.++..+|++.+|+..+.+++.++|.+..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~   82 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA----NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKA   82 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHH
Confidence            44578899999999999999999999999999999998    46889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      ++.+|.++..+|++++|+.+++++++++|++..+...++.+..
T Consensus        83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  125 (131)
T 2vyi_A           83 YGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL  125 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            9999999999999999999999999999999888877776654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.59  E-value=5.1e-14  Score=122.91  Aligned_cols=105  Identities=20%  Similarity=0.257  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc-CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC-ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p-~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      +..+...|..++..|+|++|+.+|+++++..| .    ...++.++|.|+..+|++++|+..+++|++++|++..+++.+
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   82 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ----DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK   82 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC----CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            37888999999999999999999999999987 5    347888899999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENPTDSTV  149 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~  149 (337)
                      |.++..+|++++|+.+++++++++|++..+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  112 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVPGNATI  112 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence            999999999999999999999999999844

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.58  E-value=4.2e-14  Score=110.93  Aligned_cols=116  Identities=22%  Similarity=0.342  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY------  112 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~------  112 (337)
                      +.+..+...|..++..|+|++|+.+|.+++...|.    ...++.++|.++..+|++.+|+..+++++.+.|.+      
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   77 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPT----NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ   77 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc----cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH
Confidence            56888999999999999999999999999999988    46889999999999999999999999999999887      


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         113 -PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       113 -~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                       ..+++++|.++..+|++++|+.+++++++++| +......+..+...
T Consensus        78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~  124 (131)
T 1elr_A           78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI  124 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence             99999999999999999999999999999998 57776666666544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.58  E-value=3.8e-14  Score=112.09  Aligned_cols=117  Identities=10%  Similarity=0.015  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHH
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKVKLR  118 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka~~r  118 (337)
                      ..+...|..++..|+|++|+..|.+++...|+++. ...++.++|.+++.+|+|++|+..++++++.+|++   ..+++.
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY-TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK   81 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence            35678999999999999999999999999997542 34788999999999999999999999999999999   899999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +|.++..+|++++|+..++++++..|++..+...+..+...
T Consensus        82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            99999999999999999999999999998887766665543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.56  E-value=2.2e-13  Score=114.76  Aligned_cols=126  Identities=13%  Similarity=0.135  Sum_probs=117.7

Q ss_pred             HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660          24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ  103 (337)
Q Consensus        24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~  103 (337)
                      .-++|..+|      +.+..+...|..+++.|++++|+..+.+++...|.    ...++.++|.++...+++..|+..+.
T Consensus        28 ~~~al~~~p------~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~   97 (184)
T 3vtx_A           28 YKKVLKADP------NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT----SAEAYYILGSANFMIDEKQAAIDALQ   97 (184)
T ss_dssp             HHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch----hHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            345677888      56788999999999999999999999999999998    56889999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       104 ~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +|+.++|.+..+++.+|.++..+|++++|+.+|+++++++|++..+...++.+...
T Consensus        98 ~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~  153 (184)
T 3vtx_A           98 RAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG  153 (184)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888766

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.56  E-value=4.6e-14  Score=128.66  Aligned_cols=103  Identities=22%  Similarity=0.320  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .+..++.+|+.+++.|+|++|+..|++++..+|+    +..+|.|+|.++.++|+|++|+.++++|++++|++.++++++
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   78 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   78 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4678999999999999999999999999999998    568999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENPTD  146 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P~~  146 (337)
                      |.++..+|++++|+.+|+++++++|++
T Consensus        79 g~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           79 GQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999999876

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.55  E-value=7.8e-14  Score=121.12  Aligned_cols=111  Identities=14%  Similarity=0.143  Sum_probs=94.1

Q ss_pred             hccccCCCCCChHHHHHHHHH----------------HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHH
Q psy5660          26 QQLKYDPLENTPEELATTYKD----------------EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASN   89 (337)
Q Consensus        26 qaL~~dp~~~~~~e~A~~~k~----------------~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~   89 (337)
                      +++..+|      +.+..+..                .|..+++.|+|++|+..|+++++.+|+    ...++.++|.++
T Consensus        29 ~al~~~p------~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~   98 (208)
T 3urz_A           29 QTIALNI------DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN----NVDCLEACAEMQ   98 (208)
T ss_dssp             HHHHHCH------HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHH
T ss_pred             HHHHhCC------CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHH
Confidence            3455666      66667777                999999999999999999999999999    568999999999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-----------------------------------CCHHHHHH
Q psy5660          90 FFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHL-----------------------------------KKFEDCTH  134 (337)
Q Consensus        90 ~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~l-----------------------------------g~~~eA~~  134 (337)
                      ..+|++++|+..+++|++++|++..+++.+|.++...                                   |++++|+.
T Consensus        99 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~  178 (208)
T 3urz_A           99 VCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARN  178 (208)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHH
Confidence            9999999999999999999999999988888776543                                   45667777


Q ss_pred             HHHHHHhhCCCC
Q psy5660         135 LCDELLKENPTD  146 (337)
Q Consensus       135 ~~~~al~l~P~~  146 (337)
                      +|+++++++|++
T Consensus       179 ~~~~al~l~P~~  190 (208)
T 3urz_A          179 SLQKVILRFPST  190 (208)
T ss_dssp             HHHHHTTTSCCH
T ss_pred             HHHHHHHhCCCH
Confidence            777777777753

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.54  E-value=3.8e-13  Score=104.33  Aligned_cols=116  Identities=17%  Similarity=0.299  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL  117 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~  117 (337)
                      ...+..+...|..++..|++++|+..|.+++...|.    ...++.++|.++...|++++|+..+++++..+|.+..+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   81 (125)
T 1na0_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY   81 (125)
T ss_dssp             -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHH
Confidence            345788899999999999999999999999999987    4578999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660         118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus       118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      .+|.++..+|++++|+.+++++++++|++..+...++.+.
T Consensus        82 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A           82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            9999999999999999999999999999998887776654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.53  E-value=2.4e-14  Score=119.43  Aligned_cols=101  Identities=11%  Similarity=0.134  Sum_probs=90.7

Q ss_pred             HHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660          52 FKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNY----------RSCLTDCQIALKLKPDYPKVKLRAAQ  121 (337)
Q Consensus        52 ~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~----------~~Al~d~~~Al~l~P~~~ka~~r~a~  121 (337)
                      -+.+.|++|+..|.++++++|+    .+.+|.|+|.++..++++          ++|+..|++||+++|++..+|+++|.
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~----~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~   88 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPL----DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN   88 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            3456899999999999999999    569999999999999876          59999999999999999999999999


Q ss_pred             HHHhcC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         122 CLFHLK-----------KFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       122 a~~~lg-----------~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      +|..+|           ++++|+.+|+++++++|++......+..+
T Consensus        89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~  134 (158)
T 1zu2_A           89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  134 (158)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999885           89999999999999999998665554443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.53  E-value=2.3e-13  Score=114.13  Aligned_cols=123  Identities=17%  Similarity=0.245  Sum_probs=109.7

Q ss_pred             HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHH-HHHccCH--HHHHH
Q psy5660          24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAAS-NFFLKNY--RSCLT  100 (337)
Q Consensus        24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~-~~~lg~~--~~Al~  100 (337)
                      .-+++..+|      ..+..+...|..++..|+|++|+.+|.+++...|.    +..++.++|.+ +...|++  ++|+.
T Consensus        33 ~~~al~~~p------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~l~~~~~~~~~~~A~~  102 (177)
T 2e2e_A           33 LQDKIRANP------QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE----NAELYAALATVLYYQASQHMTAQTRA  102 (177)
T ss_dssp             HHHHHHHCC------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred             HHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhcCCcchHHHHH
Confidence            334566676      45678999999999999999999999999999998    46889999999 8899999  99999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       101 d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      .++++++++|++..+++.+|.++..+|++++|+.+++++++++|++.....++..+
T Consensus       103 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i  158 (177)
T 2e2e_A          103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI  158 (177)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999987665554443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.51  E-value=5.9e-14  Score=110.38  Aligned_cols=97  Identities=18%  Similarity=0.206  Sum_probs=86.6

Q ss_pred             HhCcHHHHHHHHHHHHcc---ccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCH
Q psy5660          53 KCNKYRNAIINYTEGLKI---KCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKF  129 (337)
Q Consensus        53 k~g~y~~Ai~~Y~~ai~~---~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~  129 (337)
                      ..|++++|+.+|+++++.   +|.    ...++.++|.++..+|+|++|+..+++|++++|++..+++.+|.++..+|++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~   77 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKD----LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRY   77 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCcc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCH
Confidence            358999999999999999   465    7799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660         130 EDCTHLCDELLKENPTDSTVIDLR  153 (337)
Q Consensus       130 ~eA~~~~~~al~l~P~~~~~~~~l  153 (337)
                      ++|+..++++++++|+++.+....
T Consensus        78 ~~A~~~~~~al~~~p~~~~~~~~~  101 (117)
T 3k9i_A           78 EQGVELLLKIIAETSDDETIQSYK  101 (117)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHH
Confidence            999999999999999998775543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.51  E-value=8e-13  Score=115.25  Aligned_cols=114  Identities=14%  Similarity=0.095  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-------H
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP-------K  114 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~-------k  114 (337)
                      ..+...|..++..|+|++|+.+|.+++..+|.    ...+|.++|.++..+|++++|+..++++++++|++.       .
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  118 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYN----LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAI  118 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence            46667999999999999999999999999998    779999999999999999999999999999999999       7


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH
Q psy5660         115 VKLRAAQCLFHLKKFEDCTHLCDELLKENPT--DSTVIDLRTSCINK  159 (337)
Q Consensus       115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~--~~~~~~~l~~~~~~  159 (337)
                      +++.+|.++..+|++++|+.+|+++++++|+  +..+...++.+...
T Consensus       119 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~  165 (228)
T 4i17_A          119 YYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN  165 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence            7999999999999999999999999999999  88888877777544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.48  E-value=4.8e-13  Score=107.21  Aligned_cols=90  Identities=19%  Similarity=0.236  Sum_probs=82.8

Q ss_pred             HHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660          66 EGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT  145 (337)
Q Consensus        66 ~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~  145 (337)
                      +...++|.    .+..+.|+|.++++.|+|++|+..+++||+++|.+..+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus         4 r~a~inP~----~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   79 (126)
T 4gco_A            4 RLAYINPE----LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK   79 (126)
T ss_dssp             ---CCCHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHCHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence            44456776    78999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHH
Q psy5660         146 DSTVIDLRTSCINK  159 (337)
Q Consensus       146 ~~~~~~~l~~~~~~  159 (337)
                      +..+...++.+...
T Consensus        80 ~~~a~~~lg~~~~~   93 (126)
T 4gco_A           80 FIKGYIRKAACLVA   93 (126)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            99999999988766

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.48  E-value=7.1e-14  Score=137.19  Aligned_cols=115  Identities=27%  Similarity=0.356  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      +.|..+...|+.+++.|+|++|+.+|++|++.+|+    .+.+|.|+|.++.++|+|++|+.++++|++++|++..++++
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   79 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS----NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR   79 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            56777888999999999999999999999999998    57999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      +|.++..+|++++|+.+|+++++++|++..+...++.+.
T Consensus        80 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  118 (477)
T 1wao_1           80 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  118 (477)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999988888777763

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.48  E-value=1.2e-13  Score=105.32  Aligned_cols=103  Identities=13%  Similarity=0.183  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD--YPKVKLR  118 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~--~~ka~~r  118 (337)
                      +..+...|..++..|++++|+.+|.++++..|.    ...++.++|.++..+|++++|+..++++++++|.  +..+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE----ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            455678999999999999999999999999998    4588999999999999999999999999999999  9999999


Q ss_pred             HHHHHHhc-CCHHHHHHHHHHHHhhCCCCH
Q psy5660         119 AAQCLFHL-KKFEDCTHLCDELLKENPTDS  147 (337)
Q Consensus       119 ~a~a~~~l-g~~~eA~~~~~~al~l~P~~~  147 (337)
                      +|.++..+ |++++|++++++++..+|.+.
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            99999999 999999999999999998763

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.47  E-value=5.2e-13  Score=117.02  Aligned_cols=114  Identities=24%  Similarity=0.346  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ..+..+...|..++..|+|++|+.+|++++...|.    ...++.++|.++..+|++++|+..++++++++|++..+++.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  212 (258)
T 3uq3_A          137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR  212 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            55666777777777777777777777777777776    34677777777777777777777777777777777777777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKEN------PTDSTVIDLRTSC  156 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~------P~~~~~~~~l~~~  156 (337)
                      +|.++..+|++++|+.+++++++++      |++..+...+.++
T Consensus       213 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          213 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            7777777777777777777777777      7666666655443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.46  E-value=2.2e-12  Score=118.25  Aligned_cols=118  Identities=10%  Similarity=0.098  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660          44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCL  123 (337)
Q Consensus        44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~  123 (337)
                      ....|+.+++.|++++|+..|++++...|.++.....++.++|.++..+|++.+|+..++++++++|++..+++.+|.++
T Consensus       237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  316 (359)
T 3ieg_A          237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY  316 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            45679999999999999999999999999987777788999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy5660         124 FHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHK  161 (337)
Q Consensus       124 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~  161 (337)
                      ..+|++++|+.+++++++++|++..+...+..+....+
T Consensus       317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  354 (359)
T 3ieg_A          317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK  354 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888888766533

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.46  E-value=4.6e-13  Score=111.21  Aligned_cols=97  Identities=9%  Similarity=-0.077  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5660          59 NAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDE  138 (337)
Q Consensus        59 ~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~  138 (337)
                      .+-..|.+++.++|+    ....++++|.+++++|+|++|+..+++|+.++|.+..+|+.+|.++..+|++++|+.+|++
T Consensus        20 ~~~~~l~~al~l~p~----~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~   95 (151)
T 3gyz_A           20 NSGATLKDINAIPDD----MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV   95 (151)
T ss_dssp             HTSCCTGGGCCSCHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HCCCCHHHHhCCCHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            344568888999998    7789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHH
Q psy5660         139 LLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       139 al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +++++|++..+...++.+...
T Consensus        96 al~l~P~~~~~~~~lg~~~~~  116 (151)
T 3gyz_A           96 AFALGKNDYTPVFHTGQCQLR  116 (151)
T ss_dssp             HHHHSSSCCHHHHHHHHHHHH
T ss_pred             HHhhCCCCcHHHHHHHHHHHH
Confidence            999999999999999988776

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.45  E-value=8.3e-13  Score=129.24  Aligned_cols=116  Identities=11%  Similarity=0.064  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhhC
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL---------KNYRSCLTDCQIALKLK  109 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l---------g~~~~Al~d~~~Al~l~  109 (337)
                      ..+..+...|..+++.|+|++|+.+|.++++++|+     ..++.++|.++..+         |++++|+..+++|++++
T Consensus       135 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  209 (474)
T 4abn_A          135 ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD  209 (474)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC
Confidence            34556667777777777777777777777776664     25666666666666         66666666666666666


Q ss_pred             CCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHH
Q psy5660         110 PDYPKVKLRAAQCLFHL--------KKFEDCTHLCDELLKENP---TDSTVIDLRTSCINK  159 (337)
Q Consensus       110 P~~~ka~~r~a~a~~~l--------g~~~eA~~~~~~al~l~P---~~~~~~~~l~~~~~~  159 (337)
                      |++..+++.+|.++..+        |++++|+.+|+++++++|   ++..+...++.+...
T Consensus       210 p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~  270 (474)
T 4abn_A          210 VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY  270 (474)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH
Confidence            66666666666666666        666666666666666666   666665555555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.44  E-value=1.3e-11  Score=108.00  Aligned_cols=122  Identities=14%  Similarity=0.184  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC----------------------CchHHHHHHHHHHHHHHHccCH
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA----------------------DNDVNAQLYNNRAASNFFLKNY   95 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~----------------------~~~~~~~~~~nra~~~~~lg~~   95 (337)
                      ...+..+...|..+...|++++|+.+|.+++...|.                      .......++.++|.++..+|++
T Consensus        76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (258)
T 3uq3_A           76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW  155 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence            344889999999999999999999999999995543                      2223778999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660          96 RSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus        96 ~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ++|+..++++++++|.+..+++.+|.++..+|++++|+.+++++++++|++..+...++.+...
T Consensus       156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  219 (258)
T 3uq3_A          156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA  219 (258)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998888887765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.44  E-value=9.7e-12  Score=110.25  Aligned_cols=116  Identities=15%  Similarity=0.104  Sum_probs=107.7

Q ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q psy5660          35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK  114 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k  114 (337)
                      ..+...+..+...|..++..|++++|+.+|.+++...|.    ...+|.++|.++..+|++++|+..+++|++++|.+..
T Consensus        37 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~  112 (275)
T 1xnf_A           37 LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY  112 (275)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred             ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccH
Confidence            345688999999999999999999999999999999998    5689999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660         115 VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT  154 (337)
Q Consensus       115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  154 (337)
                      +++.+|.++..+|++++|+.+++++++++|++........
T Consensus       113 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  152 (275)
T 1xnf_A          113 AHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY  152 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            9999999999999999999999999999999986554443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.44  E-value=2.5e-12  Score=128.08  Aligned_cols=126  Identities=9%  Similarity=0.048  Sum_probs=111.1

Q ss_pred             hhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660          25 LQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQI  104 (337)
Q Consensus        25 lqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~  104 (337)
                      -+++..+|      ..+..+...|..++..|+|++|+..|+++++.+|+    ...++.++|.++..+|++++|+..+++
T Consensus        13 ~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~   82 (568)
T 2vsy_A           13 RAAVRHRP------QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG----HPEAVARLGRVRWTQQRHAEAAVLLQQ   82 (568)
T ss_dssp             --------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34566666      45788999999999999999999999999999998    568999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660         105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH  160 (337)
Q Consensus       105 Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~  160 (337)
                      |++++|++..+++.+|.++..+|++++|+.+|+++++++|++..+...++.+....
T Consensus        83 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999888888776554

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.44  E-value=6.7e-12  Score=103.90  Aligned_cols=113  Identities=12%  Similarity=0.048  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA  120 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a  120 (337)
                      +..+...|..++..|++++|+.+|.++++..|.    ...++.++|.++...|++++|+..+++++..+|.+..+++.+|
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  117 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPD----NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG  117 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHH
Confidence            455556666666666666666666666666555    3355666666666666666666666666666666666666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660         121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus       121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      .++..+|++++|+.+++++++.+|.+..+...++.+.
T Consensus       118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  154 (186)
T 3as5_A          118 VALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY  154 (186)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence            6666666666666666666666666655555554443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.43  E-value=1e-11  Score=108.01  Aligned_cols=116  Identities=15%  Similarity=0.142  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .+..+...|..++..|++++|+..|.+++...|.    ...++.++|.++..+|++++|+..++++++++|.+..+++.+
T Consensus        56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  131 (243)
T 2q7f_A           56 DAIPYINFANLLSSVNELERALAFYDKALELDSS----AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML  131 (243)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4678889999999999999999999999999887    568899999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      |.++..+|++++|+..++++++++|++..+...++.+...
T Consensus       132 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  171 (243)
T 2q7f_A          132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN  171 (243)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            9999999999999999999999999998888777776554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.43  E-value=4.7e-12  Score=108.72  Aligned_cols=114  Identities=11%  Similarity=0.081  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ..+..+...|+.++..|+|++|+..|++++.  +     .+.++.++|.++..+|++.+|+..+++|++++|.+..+++.
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~--~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   76 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQD--P-----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQ   76 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSS--C-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcC--C-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH
Confidence            4567788999999999999999999999962  3     35799999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDS----------------TVIDLRTSCINK  159 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~----------------~~~~~l~~~~~~  159 (337)
                      +|.++..+|++++|+.+|++++++.|++.                .+...++.+...
T Consensus        77 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  133 (213)
T 1hh8_A           77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK  133 (213)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence            99999999999999999999999999877                777777776654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.42  E-value=1.8e-12  Score=115.15  Aligned_cols=125  Identities=9%  Similarity=0.033  Sum_probs=107.6

Q ss_pred             ccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy5660          27 QLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL  106 (337)
Q Consensus        27 aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al  106 (337)
                      ++..+|      ..+..+...|..++..|+|++|+..|.+++. .|.++...+.+|.++|.++..+|++++|+..+++++
T Consensus        29 ~l~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~  101 (272)
T 3u4t_A           29 LEAKKY------NSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV  101 (272)
T ss_dssp             HHHTTC------CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhCC------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            455666      2344788899999999999999999999999 566666667789999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH
Q psy5660         107 KLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT-SCIN  158 (337)
Q Consensus       107 ~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~-~~~~  158 (337)
                      +++|.+..++..+|.++..+|++++|+.+++++++++|.+..+...++ .+..
T Consensus       102 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  154 (272)
T 3u4t_A          102 DRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY  154 (272)
T ss_dssp             HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             hcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988888777 4433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.42  E-value=1.7e-11  Score=101.44  Aligned_cols=118  Identities=14%  Similarity=0.113  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL  117 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~  117 (337)
                      ...+..+...|..++..|++++|+..|.+++...|.    ...++.++|.++...|++++|+..++++++.+|.+..+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   80 (186)
T 3as5_A            5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF----DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVAT   80 (186)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            367888999999999999999999999999999987    4688999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      .+|.++...|++++|+..++++++++|.+..+...++.+...
T Consensus        81 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~  122 (186)
T 3as5_A           81 VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN  122 (186)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999888877776654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.41  E-value=1.3e-13  Score=105.84  Aligned_cols=95  Identities=23%  Similarity=0.263  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------H
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY------P  113 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~------~  113 (337)
                      .+..+...|+.++..|+|++|+..|+++++..|.    ...++.|+|.|+..+|++++|+..+++|++++|++      .
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~   78 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ----NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRS   78 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence            5678899999999999999999999999999998    56889999999999999999999999999999999      9


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5660         114 KVKLRAAQCLFHLKKFEDCTHLCDE  138 (337)
Q Consensus       114 ka~~r~a~a~~~lg~~~eA~~~~~~  138 (337)
                      .+++++|.++..+|++++|+..+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           79 KLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            9999999999999998888766553

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.41  E-value=2.7e-12  Score=110.27  Aligned_cols=103  Identities=12%  Similarity=0.034  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH------
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP------  113 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~------  113 (337)
                      .+..+...|..++..|+|++|+..|.+++..+|.    ...++.++|.++..+|++++|+..+++++++.|.+.      
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  111 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH----LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI  111 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHH
Confidence            3578999999999999999999999999999998    568999999999999999999999999999988877      


Q ss_pred             ----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660         114 ----------KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD  146 (337)
Q Consensus       114 ----------ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~  146 (337)
                                .+++.+|.++..+|++++|+.+++++++++|++
T Consensus       112 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             hccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence                      999999999999999999999999999999986

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.41  E-value=2.2e-12  Score=126.17  Aligned_cols=125  Identities=8%  Similarity=0.022  Sum_probs=114.0

Q ss_pred             hccccCCCCCChHHHHHHHHHHHHHHHHh---------CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc----
Q psy5660          26 QQLKYDPLENTPEELATTYKDEGNFNFKC---------NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL----   92 (337)
Q Consensus        26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~---------g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l----   92 (337)
                      +++..+|      . +..+...|..+...         |++++|+.+|.++++++|+    ...+|.++|.++..+    
T Consensus       162 ~al~~~p------~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~  230 (474)
T 4abn_A          162 GALTHCK------N-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL----DGRSWYILGNAYLSLYFNT  230 (474)
T ss_dssp             HHHTTCC------C-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhhCC------C-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHhh
Confidence            4566665      2 47888999999999         9999999999999999998    568999999999999    


Q ss_pred             ----cCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy5660          93 ----KNYRSCLTDCQIALKLKP---DYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHK  161 (337)
Q Consensus        93 ----g~~~~Al~d~~~Al~l~P---~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~  161 (337)
                          |++++|+..+++|++++|   .+..+++.+|.++..+|++++|+.+|+++++++|++..+...++.+.....
T Consensus       231 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg  306 (474)
T 4abn_A          231 GQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLS  306 (474)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence                999999999999999999   999999999999999999999999999999999999998888887766543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.40  E-value=9e-12  Score=111.07  Aligned_cols=118  Identities=14%  Similarity=0.107  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH--------ccCHHHHHHHHHHHHhhCCC
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF--------LKNYRSCLTDCQIALKLKPD  111 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~--------lg~~~~Al~d~~~Al~l~P~  111 (337)
                      .+..+...|..+++.|+|++|+..|++++...|+++. ...+++++|.|++.        +|++++|+..++++++.+|+
T Consensus        51 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  129 (261)
T 3qky_A           51 AADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR-VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN  129 (261)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch-hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence            3677888888888888888888888888888876543 45778888888888        88888888888888888888


Q ss_pred             CHHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHH
Q psy5660         112 YPKVK-----------------LRAAQCLFHLKKFEDCTHLCDELLKENPTD---STVIDLRTSCIN  158 (337)
Q Consensus       112 ~~ka~-----------------~r~a~a~~~lg~~~eA~~~~~~al~l~P~~---~~~~~~l~~~~~  158 (337)
                      +..+.                 +.+|.++..+|++++|+..|+++++..|++   ..+...++.+..
T Consensus       130 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~  196 (261)
T 3qky_A          130 HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI  196 (261)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence            76555                 788888888888888888888888888874   345555555543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.40  E-value=4.8e-12  Score=118.92  Aligned_cols=115  Identities=16%  Similarity=0.215  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .+..+...|..+...|++++|+..|.+++...|+    ...++.++|.++..+|++++|+..++++++++|.++.+++.+
T Consensus       202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  277 (388)
T 1w3b_A          202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL  277 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            3455556666666666666666666666666665    345566666666666666666666666666666666666666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      |.++...|++++|+..|+++++++|++..+...+..+..
T Consensus       278 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  316 (388)
T 1w3b_A          278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence            666666666666666666666666666555555554443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.40  E-value=6.6e-13  Score=135.79  Aligned_cols=116  Identities=12%  Similarity=-0.043  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      +.+..+..+|..++..|+|++|+..|+++++.+|+    +..+|+++|.+++.+|+|++|+.++++|++++|++..+++.
T Consensus       431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~  506 (681)
T 2pzi_A          431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW----RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA  506 (681)
T ss_dssp             TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred             cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            44567889999999999999999999999999998    56899999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +|.++..+|++++ +.+|+++++++|++..+...++.+...
T Consensus       507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~  546 (681)
T 2pzi_A          507 LAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA  546 (681)
T ss_dssp             HHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            9999999999999 999999999999999998888887665

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.39  E-value=2.1e-11  Score=95.16  Aligned_cols=114  Identities=17%  Similarity=0.277  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ  121 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~  121 (337)
                      ..+...|..++..|++++|+..|.+++...|.    ...++.++|.++...|++++|+..+++++..+|.+..+++.+|.
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~   77 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN   77 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc----chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            45778899999999999999999999999887    45788999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         122 CLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       122 a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ++...|++++|+.+++++++..|.+..+...++.+...
T Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  115 (136)
T 2fo7_A           78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK  115 (136)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            99999999999999999999999998877776666543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.39  E-value=3.5e-13  Score=137.83  Aligned_cols=114  Identities=11%  Similarity=-0.093  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ..+..+..+|..++..|+|++|+..|++|++++|++    ..+|.|+|.++.++|+|++ +..|++|++++|++..++++
T Consensus       465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~----~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~  539 (681)
T 2pzi_A          465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE----LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFG  539 (681)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHH
Confidence            456788999999999999999999999999999994    5899999999999999999 99999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      +|.++..+|++++|+.+|+++++++|++..+...++.+.
T Consensus       540 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          540 LARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence            999999999999999999999999999998888777774

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.39  E-value=1.9e-11  Score=116.44  Aligned_cols=122  Identities=15%  Similarity=0.186  Sum_probs=106.2

Q ss_pred             HHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy5660          23 EGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDC  102 (337)
Q Consensus        23 ealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~  102 (337)
                      ...+.+..+|      ..+..+...|+.+++.|+|++|+..|++++...|.    ...++.++|.++..+|++++|+..+
T Consensus        14 ~~~~~~~~~p------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~   83 (450)
T 2y4t_A           14 GTENLYFQSM------ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD----NYIAYYRRATVFLAMGKSKAALPDL   83 (450)
T ss_dssp             ---------C------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccccH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc----cHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            3444555666      88999999999999999999999999999999998    5689999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHH
Q psy5660         103 QIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS---TVIDLRT  154 (337)
Q Consensus       103 ~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~---~~~~~l~  154 (337)
                      +++++++|++..+++.+|.++..+|++++|+..|+++++++|++.   .+...+.
T Consensus        84 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  138 (450)
T 2y4t_A           84 TKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLI  138 (450)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence            999999999999999999999999999999999999999999987   6655443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.39  E-value=8.7e-12  Score=117.12  Aligned_cols=114  Identities=11%  Similarity=0.061  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA  120 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a  120 (337)
                      +..+...|..+.+.|++++|+..|+++++.+|+    ...+|.++|.++...|++++|+..+++++.++|++..+++.+|
T Consensus       169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  244 (388)
T 1w3b_A          169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN----FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA  244 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH
Confidence            445555666666666666666666666666665    3456666666666666666666666666666666666666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      .++...|++++|+..++++++++|++..+...++.+..
T Consensus       245 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  282 (388)
T 1w3b_A          245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK  282 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            66666677777777777776666666666655555543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.39  E-value=1.8e-11  Score=107.14  Aligned_cols=112  Identities=10%  Similarity=0.037  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---HHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK---VKL  117 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k---a~~  117 (337)
                      +..+.+.|..+++.|+|++|+..|++++...|.++. ...++.++|.+++++|+|++|+..++++++.+|++..   +++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY-SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            567889999999999999999999999999887542 4578999999999999999999999999999999875   899


Q ss_pred             HHHHHHHh------------------cCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660         118 RAAQCLFH------------------LKKFEDCTHLCDELLKENPTDSTVIDLR  153 (337)
Q Consensus       118 r~a~a~~~------------------lg~~~eA~~~~~~al~l~P~~~~~~~~l  153 (337)
                      .+|.++..                  .|++++|+..|+++++..|++..+...+
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~  136 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDAT  136 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence            99999886                  5799999999999999999997665443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.38  E-value=1e-11  Score=115.57  Aligned_cols=82  Identities=11%  Similarity=0.044  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      .+.++.++|.++..+|++++|+..++++++++|++..+++.+|.++..+|++++|+.+|+++++++|++..+...++.+.
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  291 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC  291 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            35677888888888888888888888888888888888888888888888888888888888888888888877777776


Q ss_pred             HH
Q psy5660         158 NK  159 (337)
Q Consensus       158 ~~  159 (337)
                      ..
T Consensus       292 ~~  293 (365)
T 4eqf_A          292 IN  293 (365)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.38  E-value=1.4e-11  Score=109.85  Aligned_cols=114  Identities=12%  Similarity=0.123  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKV  115 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka  115 (337)
                      ..+..+...|..+++.|+|++|+..|++++...|.++ ....++.++|.|++++|+|.+|+..+++++++.|++   ..+
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE-WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            4578899999999999999999999999999999753 236899999999999999999999999999998854   679


Q ss_pred             HHHHHHHHHh--------cCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660         116 KLRAAQCLFH--------LKKFEDCTHLCDELLKENPTDSTVIDLR  153 (337)
Q Consensus       116 ~~r~a~a~~~--------lg~~~eA~~~~~~al~l~P~~~~~~~~l  153 (337)
                      ++.+|.++..        +|++++|+..|+++++.+|++..+...+
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  137 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDAT  137 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHH
Confidence            9999999999        9999999999999999999997665444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.38  E-value=1.8e-11  Score=112.16  Aligned_cols=111  Identities=16%  Similarity=0.228  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .++.+...|+.++..|+|++|+..|++++...|.    ...++.++|.++..+|++++|+..++++++++|.+..+++.+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   77 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD----NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQR   77 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence            4678889999999999999999999999999998    458999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCC---CCHHHHHHHH
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENP---TDSTVIDLRT  154 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P---~~~~~~~~l~  154 (337)
                      |.++..+|++++|+..|+++++++|   ++..+...+.
T Consensus        78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  115 (359)
T 3ieg_A           78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV  115 (359)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence            9999999999999999999999999   7777766554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.38  E-value=1.4e-11  Score=117.48  Aligned_cols=116  Identities=9%  Similarity=0.096  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660          44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCL  123 (337)
Q Consensus        44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~  123 (337)
                      ....|+.+++.|++++|+.+|++++...|.++.....++.++|.++.++|++++|+..++++++++|++..+++.+|.++
T Consensus       260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  339 (450)
T 2y4t_A          260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY  339 (450)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35569999999999999999999999999977666789999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         124 FHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       124 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ..+|++++|+.+++++++++|++..+...++.+...
T Consensus       340 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  375 (450)
T 2y4t_A          340 LIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL  375 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence            999999999999999999999999998888877654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.38  E-value=3.7e-11  Score=111.20  Aligned_cols=81  Identities=10%  Similarity=-0.027  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660          79 AQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus        79 ~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      +.++.++|.++..+|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...++.+..
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  296 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI  296 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            56777888888888888888888888888888888888888888888888888888888888888888877777777665


Q ss_pred             H
Q psy5660         159 K  159 (337)
Q Consensus       159 ~  159 (337)
                      .
T Consensus       297 ~  297 (368)
T 1fch_A          297 N  297 (368)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.38  E-value=1.2e-11  Score=115.12  Aligned_cols=115  Identities=14%  Similarity=0.127  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC----------
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP----------  110 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P----------  110 (337)
                      +..+...|..++..|+|++|+.+|+++++..|.    ...++.++|.++..+|++++|+..++++++++|          
T Consensus        99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  174 (365)
T 4eqf_A           99 AEAWQFLGITQAENENEQAAIVALQRCLELQPN----NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK  174 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc
Confidence            444555555555555555555555555555554    234555555555555555555544444444333          


Q ss_pred             ----------------------------------C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660         111 ----------------------------------D--YPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT  154 (337)
Q Consensus       111 ----------------------------------~--~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  154 (337)
                                                        .  +..+++.+|.++..+|++++|+.+|+++++++|++..+...++
T Consensus       175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  254 (365)
T 4eqf_A          175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLG  254 (365)
T ss_dssp             --------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence                                              2  4555555566666666666666666666666666555555555


Q ss_pred             HHHHH
Q psy5660         155 SCINK  159 (337)
Q Consensus       155 ~~~~~  159 (337)
                      .+...
T Consensus       255 ~~~~~  259 (365)
T 4eqf_A          255 ATLAN  259 (365)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.37  E-value=9.8e-12  Score=102.25  Aligned_cols=96  Identities=9%  Similarity=-0.032  Sum_probs=89.8

Q ss_pred             HHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5660          60 AIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDEL  139 (337)
Q Consensus        60 Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~a  139 (337)
                      +-..|.+++..+|.    ....++++|.+++..|+|.+|+..+++++.++|.+..+++.+|.++..+|++++|+.+|+++
T Consensus         6 ~~~~~~~al~~~p~----~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   81 (148)
T 2vgx_A            6 GGGTIAMLNEISSD----TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG   81 (148)
T ss_dssp             CCCSHHHHTTCCHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhHHHHHcCCHh----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34568899999988    67899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHH
Q psy5660         140 LKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       140 l~l~P~~~~~~~~l~~~~~~  159 (337)
                      ++++|++..+...++.+...
T Consensus        82 l~l~p~~~~~~~~lg~~~~~  101 (148)
T 2vgx_A           82 AVMDIXEPRFPFHAAECLLQ  101 (148)
T ss_dssp             HHHSTTCTHHHHHHHHHHHH
T ss_pred             HhcCCCCchHHHHHHHHHHH
Confidence            99999999999888888765

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.37  E-value=8.3e-12  Score=108.61  Aligned_cols=121  Identities=12%  Similarity=0.113  Sum_probs=90.5

Q ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q psy5660          35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK  114 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k  114 (337)
                      ..+.-.+..+..+|..++..|+|++|+..|.+++...|.    ...++.++|.++..+|++++|+..++++++++|.+..
T Consensus        17 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~   92 (243)
T 2q7f_A           17 RGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE----DAIPYINFANLLSSVNELERALAFYDKALELDSSAAT   92 (243)
T ss_dssp             -------------------------CCTTHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCchhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchH
Confidence            344567888999999999999999999999999999998    4689999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         115 VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +++.+|.++..+|++++|+..++++++++|.+..+...++.+...
T Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~  137 (243)
T 2q7f_A           93 AYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK  137 (243)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888877777654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.37  E-value=2.2e-11  Score=107.00  Aligned_cols=121  Identities=15%  Similarity=0.065  Sum_probs=105.7

Q ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q psy5660          35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK  114 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k  114 (337)
                      ..|...+..+...|..++..|++++|+.+|.+++...|.    ...++.++|.++...|++++|+..++++++++|.+..
T Consensus        31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  106 (252)
T 2ho1_A           31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS----SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR  106 (252)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH
Confidence            456667899999999999999999999999999999887    4578889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHH
Q psy5660         115 VKLRAAQCLFHLKKFEDCTHLCDELLK--ENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       115 a~~r~a~a~~~lg~~~eA~~~~~~al~--l~P~~~~~~~~l~~~~~~  159 (337)
                      +++.+|.++...|++++|+.+++++++  .+|.+..+...++.+...
T Consensus       107 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~  153 (252)
T 2ho1_A          107 VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ  153 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH
Confidence            999999999999999999999999998  777777777777666544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.37  E-value=3.5e-11  Score=103.03  Aligned_cols=115  Identities=13%  Similarity=0.019  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHh--hCCCCHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL-KNYRSCLTDCQIALK--LKPDYPKVKL  117 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l-g~~~~Al~d~~~Al~--l~P~~~ka~~  117 (337)
                      +..+...|..++..|++++|+.+|.+++...|.    ...++.++|.++..+ |++++|+..++++++  .+|.+..+++
T Consensus        42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  117 (225)
T 2vq2_A           42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD----SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANL  117 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHH
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHH
Confidence            556777788888888888888888888887776    446777788888888 888888888888887  5566677778


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      .+|.++...|++++|+.+++++++.+|++..+...++.+...
T Consensus       118 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  159 (225)
T 2vq2_A          118 NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML  159 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence            888888888888888888888888888777776666665543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.37  E-value=4.1e-11  Score=102.57  Aligned_cols=117  Identities=19%  Similarity=0.177  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ..+..+...|..++..|++++|+..|.++++..|.    ...++.++|.++..+|++++|+..+++++.++|.+..+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   81 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK----NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN   81 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc----chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence            67889999999999999999999999999999998    45889999999999999999999999999999999999999


Q ss_pred             HHHHHHhc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHH
Q psy5660         119 AAQCLFHL-KKFEDCTHLCDELLK--ENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       119 ~a~a~~~l-g~~~eA~~~~~~al~--l~P~~~~~~~~l~~~~~~  159 (337)
                      +|.++... |++++|+..++++++  .+|.+..+...++.+...
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  125 (225)
T 2vq2_A           82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK  125 (225)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH
Confidence            99999999 999999999999999  566666777777666554

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.36  E-value=6.2e-12  Score=116.52  Aligned_cols=116  Identities=14%  Similarity=0.138  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .+..+...|..+++.|++++|+.+|++++...|.    ...++.++|.++..+|++++|+..++++++++|.+..+++.+
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  291 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN----DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL  291 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            5678889999999999999999999999999998    458999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCC-----------HHHHHHHHHHHHH
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENPTD-----------STVIDLRTSCINK  159 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P~~-----------~~~~~~l~~~~~~  159 (337)
                      |.++..+|++++|+.+++++++++|++           ..+...++.+...
T Consensus       292 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  342 (368)
T 1fch_A          292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM  342 (368)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH
Confidence            999999999999999999999999988           6777777776654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.36  E-value=1.4e-11  Score=119.06  Aligned_cols=107  Identities=31%  Similarity=0.386  Sum_probs=101.4

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVK  116 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~  116 (337)
                      +.+.+..++..|+.+++.|+|++|+..|++++..+|+     ..+|.++|.|++++|++++|+..++++++++|++..++
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   76 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-----PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVL   76 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHH
Confidence            4678999999999999999999999999999999983     57899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q psy5660         117 LRAAQCLFHLKKFEDCTHLCDELLKENPTDST  148 (337)
Q Consensus       117 ~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~  148 (337)
                      +.+|.++..+|++++|+..|+++++++|.+..
T Consensus        77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  108 (514)
T 2gw1_A           77 LRRASANEGLGKFADAMFDLSVLSLNGDFNDA  108 (514)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence            99999999999999999999999999987643

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.35  E-value=2.2e-11  Score=106.94  Aligned_cols=116  Identities=17%  Similarity=0.098  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--hCCCCHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK--LKPDYPKVKL  117 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~--l~P~~~ka~~  117 (337)
                      .+..+...|..++..|++++|+..|.++++..|.    ...++.++|.++..+|++++|+..+++++.  .+|.+..+++
T Consensus        70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  145 (252)
T 2ho1_A           70 SADAHAALAVVFQTEMEPKLADEEYRKALASDSR----NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFE  145 (252)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC----cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHH
Confidence            3567788889999999999999999999988887    457888889999899999999999999888  7888888888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      .+|.++...|++++|+.+++++++++|.+..+...++.+...
T Consensus       146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  187 (252)
T 2ho1_A          146 NLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK  187 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence            899999999999999999999999888888777777766554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.33  E-value=4.6e-11  Score=108.36  Aligned_cols=116  Identities=9%  Similarity=-0.018  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHhC-cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCN-KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g-~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      .+..+...|..++..| ++++|+.+|.+++...|.+    ..+|.++|.++..+|++++|+..+++++++.|.+..+++.
T Consensus        89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  164 (330)
T 3hym_B           89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY----GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY  164 (330)
T ss_dssp             STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC----THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHH
Confidence            3566778888888888 8999999999999988874    4778889999999999999999999999999998888999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +|.++...|++++|+..++++++++|++..+...++.+...
T Consensus       165 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  205 (330)
T 3hym_B          165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ  205 (330)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            99999999999999999999999999988887777776654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.32  E-value=2.4e-11  Score=94.79  Aligned_cols=103  Identities=18%  Similarity=0.331  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .+..+...|..++..|++++|+..|.+++...|.    ...++.++|.++...|++++|+..++++++..|.+..+++.+
T Consensus        34 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  109 (136)
T 2fo7_A           34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL  109 (136)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC----chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            3567788999999999999999999999999987    457889999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENPTD  146 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P~~  146 (337)
                      |.++...|++++|..++++++.++|++
T Consensus       110 a~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          110 GNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            999999999999999999999999864

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.31  E-value=1.3e-11  Score=120.31  Aligned_cols=121  Identities=23%  Similarity=0.288  Sum_probs=101.9

Q ss_pred             hhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHH
Q psy5660          20 PLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL   99 (337)
Q Consensus        20 ~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al   99 (337)
                      |.+..+..+..    .+..+.+..+...|+.+++.|+|++|+.+|++++..+|+    +..+|.++|.|+.++|++.+|+
T Consensus         8 ~~~~~~~~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~   79 (537)
T 3fp2_A            8 PDIAQLKGLSP----SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN----EPVFYSNISACYISTGDLEKVI   79 (537)
T ss_dssp             CCHHHHTTSCH----HHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             chHHhhcCCCc----chhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC----CcHHHHHHHHHHHHcCCHHHHH
Confidence            44555555543    345578999999999999999999999999999999998    5699999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660         100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV  149 (337)
Q Consensus       100 ~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~  149 (337)
                      ..++++++++|++..+++.+|.++..+|++++|+..|+ ++.++|+....
T Consensus        80 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~  128 (537)
T 3fp2_A           80 EFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA  128 (537)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChH
Confidence            99999999999999999999999999999999999996 88888876543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.30  E-value=4.6e-11  Score=105.95  Aligned_cols=120  Identities=13%  Similarity=0.132  Sum_probs=107.7

Q ss_pred             ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660          36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV  115 (337)
Q Consensus        36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka  115 (337)
                      .+.-.+..+...|..+...|++++|+.+|.++++.+|.+    ..++.++|.++..+|++++|+..++++++++|.+..+
T Consensus        69 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  144 (272)
T 3u4t_A           69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR----LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV  144 (272)
T ss_dssp             TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHH
T ss_pred             chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHH
Confidence            333457789999999999999999999999999999984    4889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ++.+|...+..+++++|+..++++++++|++..+...++.+...
T Consensus       145 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~  188 (272)
T 3u4t_A          145 FYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAA  188 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            99999555556699999999999999999998887777777654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.30  E-value=5.4e-11  Score=107.91  Aligned_cols=116  Identities=10%  Similarity=0.014  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .+..+...|..++..|++++|+..|.+++...|.+    ...+.++|.++..+|++++|+..++++++.+|.+..+++.+
T Consensus       124 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  199 (330)
T 3hym_B          124 YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC----HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV  199 (330)
T ss_dssp             CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC----SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            45668888999999999999999999999988874    36677788899899999999999999999999888888899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHH
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKEN---------PTDSTVIDLRTSCINK  159 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~---------P~~~~~~~~l~~~~~~  159 (337)
                      |.++..+|++++|+..+++++++.         |.+..+...++.+...
T Consensus       200 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~  248 (330)
T 3hym_B          200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK  248 (330)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence            999999999999999999988876         5556666666666554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.29  E-value=3.6e-11  Score=108.92  Aligned_cols=116  Identities=17%  Similarity=0.176  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .+..+...|..++..|++++|+.+|.+++...|.    ...++.++|.++..+|++++|+..++++++++|.+..+++.+
T Consensus       171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  246 (327)
T 3cv0_A          171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD----DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNM  246 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            4677888999999999999999999999999987    457899999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHH
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENPT------------DSTVIDLRTSCINK  159 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P~------------~~~~~~~l~~~~~~  159 (337)
                      |.++..+|++++|+.+++++++++|+            +..+...++.+...
T Consensus       247 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  298 (327)
T 3cv0_A          247 AVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV  298 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh
Confidence            99999999999999999999999998            56666666665543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.29  E-value=2.2e-11  Score=111.12  Aligned_cols=114  Identities=11%  Similarity=0.055  Sum_probs=99.9

Q ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC--chHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhhCCC
Q psy5660          35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD--NDVNAQLYNNRAASNFFL-KNYRSCLTDCQIALKLKPD  111 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~--~~~~~~~~~nra~~~~~l-g~~~~Al~d~~~Al~l~P~  111 (337)
                      +.+...+..+.+.|+.+.+.|+|++|+.+|++|+.+.+..  ....+.++.|+|.++... |++++|+..+++|+++.|.
T Consensus        71 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~  150 (292)
T 1qqe_A           71 GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ  150 (292)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Confidence            4566778999999999999999999999999999987743  223467899999999995 9999999999999999885


Q ss_pred             C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q psy5660         112 Y------PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDST  148 (337)
Q Consensus       112 ~------~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~  148 (337)
                      +      ..++.++|.++..+|++++|+.+|++++++.|++..
T Consensus       151 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence            4      567899999999999999999999999999988753

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.29  E-value=4.4e-11  Score=97.00  Aligned_cols=94  Identities=7%  Similarity=-0.059  Sum_probs=85.3

Q ss_pred             HHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660          62 INYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLK  141 (337)
Q Consensus        62 ~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~  141 (337)
                      ..|.+++..+|+    ....++++|.+++..|+|.+|+..+++++.++|.+..+++.+|.++..+|++++|+.+|++++.
T Consensus         5 ~~l~~al~~~p~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   80 (142)
T 2xcb_A            5 GTLAMLRGLSED----TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL   80 (142)
T ss_dssp             ----CCTTCCHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHcCCHH----HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            467888888887    6788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHH
Q psy5660         142 ENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       142 l~P~~~~~~~~l~~~~~~  159 (337)
                      ++|++..+...++.+...
T Consensus        81 ~~p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           81 MDINEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HCTTCTHHHHHHHHHHHH
T ss_pred             cCCCCcHHHHHHHHHHHH
Confidence            999999999888888765

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.29  E-value=6.2e-11  Score=92.19  Aligned_cols=84  Identities=12%  Similarity=0.037  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5660          59 NAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDE  138 (337)
Q Consensus        59 ~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~  138 (337)
                      .|+..|.++++.+|+    ...++.++|.++..+|++++|+..+++|++++|.+..+++.+|.++..+|++++|+.+|++
T Consensus         3 ~a~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A            3 AITERLEAMLAQGTD----NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             CHHHHHHHHHTTTCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            588999999999998    4589999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCC
Q psy5660         139 LLKENPTD  146 (337)
Q Consensus       139 al~l~P~~  146 (337)
                      +++++|.+
T Consensus        79 al~~~~~~   86 (115)
T 2kat_A           79 GLAAAQSR   86 (115)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhcccc
Confidence            99998753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.29  E-value=2.8e-11  Score=110.36  Aligned_cols=117  Identities=11%  Similarity=0.046  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHH-----------------
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTD-----------------  101 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d-----------------  101 (337)
                      ..+..+...|..++..|++++|+..|+++++.+|+    +..++.++|.+++.+|++++|+..                 
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~  190 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ----NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV  190 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc----chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence            45677788999999999999999999999999998    557888888888888888876544                 


Q ss_pred             -----------------HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHH
Q psy5660         102 -----------------CQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD--STVIDLRTSCINK  159 (337)
Q Consensus       102 -----------------~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~--~~~~~~l~~~~~~  159 (337)
                                       +++++.++|++..+++.+|.++...|++++|+..|+++++.+|++  ..+...+..+...
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~  267 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA  267 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence                             455567788888888888888888888888888888888888887  6677766666554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.28  E-value=3.1e-10  Score=89.42  Aligned_cols=82  Identities=12%  Similarity=0.161  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      .+..+.++|.++++.|+|.+|+..+++|++++|++..+++.+|.++..+|++++|+.+|+++++++|++..+...++.+.
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999998888887


Q ss_pred             HH
Q psy5660         158 NK  159 (337)
Q Consensus       158 ~~  159 (337)
                      ..
T Consensus        83 ~~   84 (126)
T 3upv_A           83 IA   84 (126)
T ss_dssp             HH
T ss_pred             HH
Confidence            66

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.28  E-value=1.4e-11  Score=112.34  Aligned_cols=124  Identities=12%  Similarity=0.021  Sum_probs=101.3

Q ss_pred             hccccCCCCCChHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHccccCCc--hHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy5660          26 QQLKYDPLENTPEELATTYKDEGNFNFKC-NKYRNAIINYTEGLKIKCADN--DVNAQLYNNRAASNFFLKNYRSCLTDC  102 (337)
Q Consensus        26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~-g~y~~Ai~~Y~~ai~~~p~~~--~~~~~~~~nra~~~~~lg~~~~Al~d~  102 (337)
                      +++.+.++.+.+...+..+.+.|..+... |++++|+.+|++|+++.|.+.  ...+.++.|+|.++..+|+|++|+..+
T Consensus       102 ~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  181 (292)
T 1qqe_A          102 NAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIY  181 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            34555444466677789999999999997 999999999999999987542  223578999999999999999999999


Q ss_pred             HHHHhhCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660         103 QIALKLKPDYPK-------VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV  149 (337)
Q Consensus       103 ~~Al~l~P~~~k-------a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~  149 (337)
                      ++++++.|.+..       +++++|.|+..+|++++|+.+|+++++++|++...
T Consensus       182 ~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          182 SKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             HHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            999999987643       68899999999999999999999999999987653

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.28  E-value=1.3e-10  Score=106.26  Aligned_cols=113  Identities=8%  Similarity=-0.063  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHH----HccCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNF----FLKNYRSCLTDCQIALKLKPDYPKVK  116 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~----~lg~~~~Al~d~~~Al~l~P~~~ka~  116 (337)
                      ...+...|..+.+.|++++|+..|+++++.+|++.      ..+++.++.    ..|++++|+..++++++.+|.++.++
T Consensus       130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~------~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~  203 (291)
T 3mkr_A          130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT------LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLL  203 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH------HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHH
Confidence            45677889999999999999999999999988732      233333322    34889999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         117 LRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       117 ~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +.+|.++..+|++++|+..++++++++|++..+...+..+...
T Consensus       204 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~  246 (291)
T 3mkr_A          204 NGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH  246 (291)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988888766654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.27  E-value=8.8e-11  Score=98.64  Aligned_cols=116  Identities=13%  Similarity=-0.016  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHH-HHccCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASN-FFLKNYRSCLTDCQIALKLKPDYPKVKL  117 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~-~~lg~~~~Al~d~~~Al~l~P~~~ka~~  117 (337)
                      ..+..+...|..+...|++++|+..|.+++...| ++    .++..++.+. ...+....|+..++++++++|++..+++
T Consensus        38 ~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~----~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~  112 (176)
T 2r5s_A           38 SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN----SYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELAC  112 (176)
T ss_dssp             TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH----HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHH
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch----HHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHH
Confidence            6677888888888888888888888888888887 54    2223333332 2333444578889999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHH
Q psy5660         118 RAAQCLFHLKKFEDCTHLCDELLKENPTD--STVIDLRTSCINK  159 (337)
Q Consensus       118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~--~~~~~~l~~~~~~  159 (337)
                      .+|.++...|++++|+..|+++++++|+.  ..+...+..+...
T Consensus       113 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~  156 (176)
T 2r5s_A          113 ELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA  156 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence            99999999999999999999999999875  4577777666554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.27  E-value=6.9e-12  Score=105.00  Aligned_cols=109  Identities=11%  Similarity=0.116  Sum_probs=96.0

Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHh
Q psy5660          47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQC-LFH  125 (337)
Q Consensus        47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a-~~~  125 (337)
                      .++.++..|+|++|+..|.+++...|.    ...+|.++|.++..+|++.+|+..++++++++|.+..+++.+|.+ +..
T Consensus        16 ~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~   91 (177)
T 2e2e_A           16 PLHQFASQQNPEAQLQALQDKIRANPQ----NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ   91 (177)
T ss_dssp             TTCCCC-----CCCCHHHHHHHHHCCS----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhccCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            344567789999999999999999998    558999999999999999999999999999999999999999999 889


Q ss_pred             cCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         126 LKKF--EDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       126 lg~~--~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      .|++  ++|+.+++++++++|++..+...++.+...
T Consensus        92 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  127 (177)
T 2e2e_A           92 ASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM  127 (177)
T ss_dssp             TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             cCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            9999  999999999999999999998888887665

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.26  E-value=6e-10  Score=100.79  Aligned_cols=81  Identities=19%  Similarity=0.176  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660          79 AQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus        79 ~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      ..++.++|.++..+|++++|+..++++++.+|.+..+++.+|.++...|++++|+..++++++++|++..+...++.+..
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  251 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS  251 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            45677788888888888888888888888888888888888888888888888888888888888888888777777665


Q ss_pred             H
Q psy5660         159 K  159 (337)
Q Consensus       159 ~  159 (337)
                      .
T Consensus       252 ~  252 (327)
T 3cv0_A          252 N  252 (327)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.26  E-value=8e-11  Score=107.77  Aligned_cols=102  Identities=16%  Similarity=0.131  Sum_probs=92.5

Q ss_pred             HHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q psy5660          49 NFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKK  128 (337)
Q Consensus        49 n~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~  128 (337)
                      +.+...|++++|+..|+++++..|+    ...++.++|.++.++|++++|+..+++|++++|+++.+++++|.++..+|+
T Consensus       174 ~l~~~~~~~~eA~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~  249 (291)
T 3mkr_A          174 SLAAGGEKLQDAYYIFQEMADKCSP----TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK  249 (291)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHhCchHHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            3334568999999999999999998    568999999999999999999999999999999999999999999999999


Q ss_pred             HHH-HHHHHHHHHhhCCCCHHHHHHHH
Q psy5660         129 FED-CTHLCDELLKENPTDSTVIDLRT  154 (337)
Q Consensus       129 ~~e-A~~~~~~al~l~P~~~~~~~~l~  154 (337)
                      +.+ +..+++++++++|+++.+..+..
T Consensus       250 ~~eaa~~~~~~~~~~~P~~~~~~d~~~  276 (291)
T 3mkr_A          250 PPEVTNRYLSQLKDAHRSHPFIKEYRA  276 (291)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            986 56899999999999998877543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.26  E-value=2.2e-10  Score=100.20  Aligned_cols=117  Identities=10%  Similarity=0.087  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH------------------ccCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF------------------LKNYRSCLTD  101 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~------------------lg~~~~Al~d  101 (337)
                      ....+...|..+++.|+|++|+..|+++++..|+++. ...+++++|.++..                  +|++++|+..
T Consensus        40 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~-~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  118 (225)
T 2yhc_A           40 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSD  118 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHH
Confidence            4578889999999999999999999999999998653 34578889999886                  5799999999


Q ss_pred             HHHHHhhCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHH
Q psy5660         102 CQIALKLKPDYPKVK-----------------LRAAQCLFHLKKFEDCTHLCDELLKENPTDST---VIDLRTSCI  157 (337)
Q Consensus       102 ~~~Al~l~P~~~ka~-----------------~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~---~~~~l~~~~  157 (337)
                      ++++++..|++..+.                 +.+|.++...|++++|+..|+++++..|+++.   +...++.+.
T Consensus       119 ~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~  194 (225)
T 2yhc_A          119 FSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAY  194 (225)
T ss_dssp             HHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHH
Confidence            999999999987554                 67899999999999999999999999999874   344444443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.24  E-value=2.6e-10  Score=100.91  Aligned_cols=107  Identities=20%  Similarity=0.138  Sum_probs=98.8

Q ss_pred             HhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q psy5660          53 KCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDC  132 (337)
Q Consensus        53 k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA  132 (337)
                      ..|+|++|+..|+++++..+.++...+.++.++|.++..+|++++|+..+++|++++|.+..+++.+|.++..+|++++|
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence            45789999999999999866555558899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         133 THLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       133 ~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +.+++++++++|++..+...++.+...
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~  123 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYY  123 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHH
Confidence            999999999999999888888887655

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.24  E-value=8.9e-11  Score=107.02  Aligned_cols=69  Identities=19%  Similarity=0.206  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD  146 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~  146 (337)
                      ....+.++|..++..|++++|+..++++++++|++..+++.+|.++...|++++|+..+++++..+|++
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~  184 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT  184 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch
Confidence            567889999999999999999999999999999999999999999999999999999988888877744

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.24  E-value=5.6e-11  Score=118.27  Aligned_cols=118  Identities=8%  Similarity=0.016  Sum_probs=107.3

Q ss_pred             hccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660          26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA  105 (337)
Q Consensus        26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A  105 (337)
                      +++..+|      ..+..+...|..++..|++++|+.+|+++++.+|+    ...++.++|.++..+|++++|+..+++|
T Consensus        48 ~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a  117 (568)
T 2vsy_A           48 RGLALHP------GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE----HPGIALWLGHALEDAGQAEAAAAAYTRA  117 (568)
T ss_dssp             HHHTTST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4566676      45788999999999999999999999999999998    5689999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660         106 LKLKPDYPKVKLRAAQCLFHL---KKFEDCTHLCDELLKENPTDSTVIDLR  153 (337)
Q Consensus       106 l~l~P~~~ka~~r~a~a~~~l---g~~~eA~~~~~~al~l~P~~~~~~~~l  153 (337)
                      ++++|++..+++.+|.++..+   |++++|+..++++++.+|++.....++
T Consensus       118 l~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  168 (568)
T 2vsy_A          118 HQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFL  168 (568)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred             HHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHh
Confidence            999999999999999999999   999999999999999999875544333

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.23  E-value=1.1e-10  Score=86.06  Aligned_cols=84  Identities=23%  Similarity=0.323  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ..+..+...|..++..|+|++|+.+|.+++...|.    ...++.++|.++..+|++++|+..++++++++|.+..++..
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~   82 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN   82 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            34555556666666666666666666666666555    33555566666666666666666666666666666666666


Q ss_pred             HHHHHHhc
Q psy5660         119 AAQCLFHL  126 (337)
Q Consensus       119 ~a~a~~~l  126 (337)
                      +|.++..+
T Consensus        83 l~~~~~~~   90 (91)
T 1na3_A           83 LGNAKQKQ   90 (91)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            66655544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.22  E-value=1.8e-11  Score=92.40  Aligned_cols=91  Identities=18%  Similarity=0.182  Sum_probs=74.7

Q ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660          45 KDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQ-LYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCL  123 (337)
Q Consensus        45 k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~-~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~  123 (337)
                      .++|..+++.|+|++|+..|+++++..|.    ... ++.++|.++..+|++++|+..+++|++++|++..++++     
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-----   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPV----GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-----   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSS----THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCC----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-----
Confidence            46788888888999999999999888887    446 88888999888899999999999999999888887754     


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660         124 FHLKKFEDCTHLCDELLKENPTDS  147 (337)
Q Consensus       124 ~~lg~~~eA~~~~~~al~l~P~~~  147 (337)
                         +.+.+|+..|++++..+|++.
T Consensus        75 ---~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           75 ---KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             ---HHHHHHHHHHCCTTHHHHCCS
T ss_pred             ---HHHHHHHHHHHHHhccCcccc
Confidence               567778888888877777653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.21  E-value=5.7e-11  Score=110.99  Aligned_cols=98  Identities=15%  Similarity=0.252  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .+..+.+.|..+++.|+|++|+.+|+++|+++|+    +..+|+++|.++..+|+|++|+.++++|++++|++..++..+
T Consensus       195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l  270 (336)
T 1p5q_A          195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSN----NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL  270 (336)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            3789999999999999999999999999999998    568999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHH-HHHHHHHHh
Q psy5660         120 AQCLFHLKKFEDC-THLCDELLK  141 (337)
Q Consensus       120 a~a~~~lg~~~eA-~~~~~~al~  141 (337)
                      |.++..+|++++| ...|++++.
T Consensus       271 ~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          271 AVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999 456666654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.20  E-value=2.3e-10  Score=111.38  Aligned_cols=115  Identities=17%  Similarity=0.197  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA  120 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a  120 (337)
                      +..+...|..++..|++++|+.+|.+++...|.    ...++.++|.++..+|++++|+..++++++++|.+..+++.+|
T Consensus       276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la  351 (537)
T 3fp2_A          276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE----YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA  351 (537)
T ss_dssp             HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHH
T ss_pred             chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            566778888888888888899889888888887    4578899999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      .++..+|++++|+..++++++++|++..+...++.+...
T Consensus       352 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  390 (537)
T 3fp2_A          352 CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTD  390 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            999999999999999999999999998888887777655

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.19  E-value=2.6e-10  Score=91.01  Aligned_cols=71  Identities=17%  Similarity=0.327  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDST  148 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~  148 (337)
                      .+.++.|+|.++++.|+|++|+..+++||+++|++..+|+++|.++..+|++++|+.+|+++++++|++..
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~   77 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA   77 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence            67889999999999999999999999999999999999999999999999999999999999999987743

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.19  E-value=1.3e-10  Score=94.92  Aligned_cols=107  Identities=22%  Similarity=0.302  Sum_probs=93.4

Q ss_pred             hccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660          26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA  105 (337)
Q Consensus        26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A  105 (337)
                      +++..+|      ..+..+...|..++..|+|++|+.+|.+++...|.    ...++.++|.++..+|++++|+..++++
T Consensus        38 ~al~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a  107 (166)
T 1a17_A           38 QAIELNP------SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK----YIKGYYRRAASNMALGKFRAALRDYETV  107 (166)
T ss_dssp             HHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            3455565      34778889999999999999999999999999998    5689999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         106 LKLKPDYPKVKLRA--AQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       106 l~l~P~~~ka~~r~--a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                      ++++|.+..++..+  +..+...|++++|+..+.++..+
T Consensus       108 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          108 VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            99999999888554  44588899999999999887654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.19  E-value=2.7e-10  Score=100.62  Aligned_cols=122  Identities=23%  Similarity=0.184  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc----CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC----ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL-----  108 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p----~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l-----  108 (337)
                      ...+..+...|..++..|+|++|+.+|.+++....    .+......++.++|.++..+|++++|+..+.+|+.+     
T Consensus        40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  119 (283)
T 3edt_B           40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL  119 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence            47889999999999999999999999999998741    123347889999999999999999999999999998     


Q ss_pred             ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHH
Q psy5660         109 ---KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE--------NPTDSTVIDLRTSCINK  159 (337)
Q Consensus       109 ---~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l--------~P~~~~~~~~l~~~~~~  159 (337)
                         +|....+++.+|.++..+|++++|+.++++++++        +|....+...++.+...
T Consensus       120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  181 (283)
T 3edt_B          120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK  181 (283)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence               5777899999999999999999999999999998        55555566666666543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.19  E-value=1.7e-10  Score=114.03  Aligned_cols=116  Identities=13%  Similarity=0.039  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCC-
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL------KPDY-  112 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l------~P~~-  112 (337)
                      .+..+...|..+.+.|++++|+..|+++++..|.    ...+|.++|.++.+.|++++|+..+++++++      +|.+ 
T Consensus       440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~  515 (597)
T 2xpi_A          440 THLPYLFLGMQHMQLGNILLANEYLQSSYALFQY----DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW  515 (597)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence            3456667777777777777777777777777776    3466777777777777777777777777777      5554 


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         113 PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       113 ~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ..++..+|.++...|++++|+..++++++++|++..+...+..+...
T Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  562 (597)
T 2xpi_A          516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH  562 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            67777777777777777777777777777777777777777766554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.18  E-value=2.6e-10  Score=109.59  Aligned_cols=121  Identities=8%  Similarity=0.001  Sum_probs=99.5

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC-----chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD-----NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK--  109 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~-----~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~--  109 (337)
                      ....+..|...|.+++..|+|++|+++|++|+++.+..     .......|.|+|.+|..+|+|.+|+.++++|+++.  
T Consensus        47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~  126 (472)
T 4g1t_A           47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK  126 (472)
T ss_dssp             ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence            33557788899999999999999999999999873210     11256889999999999999999999999999873  


Q ss_pred             ------CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660         110 ------PDYPKVKLRAAQCLFHLK--KFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus       110 ------P~~~ka~~r~a~a~~~lg--~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                            +....++...|.++..+|  +|++|+.+|+++++++|+++.+...+..+.
T Consensus       127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~  182 (472)
T 4g1t_A          127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS  182 (472)
T ss_dssp             SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                  356788889998887764  699999999999999999998877666553

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.16  E-value=6.3e-10  Score=81.81  Aligned_cols=80  Identities=13%  Similarity=0.249  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      .+.++.++|.++...|++.+|+..+++|++++|.+..+++.+|.++..+|++++|+.+++++++++|++..+...++.+.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999998888777664

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.16  E-value=2.6e-10  Score=103.67  Aligned_cols=125  Identities=14%  Similarity=0.084  Sum_probs=90.7

Q ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----
Q psy5660          35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA--DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL----  108 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~--~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l----  108 (337)
                      ......+..+...|..++..++|++|+.+|.+|+...+.  +......++.|+|.++..+|+|++|+..+++|++.    
T Consensus       109 ~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  188 (293)
T 3u3w_A          109 PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL  188 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence            444567777778888888888888888888888875433  23335667888888888888888888888888842    


Q ss_pred             ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q psy5660         109 ---KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD------STVIDLRTSCINK  159 (337)
Q Consensus       109 ---~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~------~~~~~~l~~~~~~  159 (337)
                         .+....+++++|.++..+|+|++|+.++++++++.+..      ..+...++.+...
T Consensus       189 ~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~  248 (293)
T 3u3w_A          189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK  248 (293)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence               22334677888888888888888888888888775433      4556666666654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.16  E-value=1e-09  Score=88.18  Aligned_cols=109  Identities=16%  Similarity=0.226  Sum_probs=96.6

Q ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q psy5660          35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA--DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY  112 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~--~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~  112 (337)
                      +.+...+..+...|..++..|+|++|+.+|.+++...+.  +....+.++.++|.++..+|++++|+..+++|+.+.+..
T Consensus         3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   82 (164)
T 3ro3_A            3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL   82 (164)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            456788999999999999999999999999999998653  344466799999999999999999999999999986543


Q ss_pred             ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660         113 ------PKVKLRAAQCLFHLKKFEDCTHLCDELLKEN  143 (337)
Q Consensus       113 ------~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~  143 (337)
                            ..+++.+|.++..+|++++|+.++++++++.
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  119 (164)
T 3ro3_A           83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA  119 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence                  6788999999999999999999999999874

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.15  E-value=4.2e-10  Score=103.15  Aligned_cols=122  Identities=11%  Similarity=0.017  Sum_probs=100.7

Q ss_pred             HHhhccccCCCCCChHHHHHHHHHHHHHHHH-------hCcH-------HHHHHHHHHHHc-cccCCchHHHHHHHHHHH
Q psy5660          23 EGLQQLKYDPLENTPEELATTYKDEGNFNFK-------CNKY-------RNAIINYTEGLK-IKCADNDVNAQLYNNRAA   87 (337)
Q Consensus        23 ealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k-------~g~y-------~~Ai~~Y~~ai~-~~p~~~~~~~~~~~nra~   87 (337)
                      ..-+++..+|      ..+..+...|..+..       .|++       ++|+..|++|+. +.|+    ...+|.++|.
T Consensus        38 ~~~~al~~~p------~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~----~~~~~~~~~~  107 (308)
T 2ond_A           38 AYEQCLLVLG------HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK----NMLLYFAYAD  107 (308)
T ss_dssp             HHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT----CHHHHHHHHH
T ss_pred             HHHHHHHHcC------CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc----cHHHHHHHHH
Confidence            3445666676      566777777777653       4775       899999999999 6887    5578999999


Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          88 SNFFLKNYRSCLTDCQIALKLKPDYPK-VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT  154 (337)
Q Consensus        88 ~~~~lg~~~~Al~d~~~Al~l~P~~~k-a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  154 (337)
                      ++..+|++++|+..+++|++++|.+.. +|..+|.++...|++++|...|+++++++|.+..+.....
T Consensus       108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a  175 (308)
T 2ond_A          108 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA  175 (308)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            999999999999999999999999886 8999999999999999999999999999988766654333

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.15  E-value=2.8e-10  Score=103.53  Aligned_cols=126  Identities=14%  Similarity=0.101  Sum_probs=93.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH---hh
Q psy5660          34 ENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA--DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL---KL  108 (337)
Q Consensus        34 ~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~--~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al---~l  108 (337)
                      .......+..+...|..+...|+|++|+.+|.+|+...+.  +......+|.++|.++..+|+|++|+..+++|+   +.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~  187 (293)
T 2qfc_A          108 HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA  187 (293)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence            3444466666777888888888888888888888876443  233346788888888888888888888888888   55


Q ss_pred             CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q psy5660         109 KPDYP----KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD------STVIDLRTSCINK  159 (337)
Q Consensus       109 ~P~~~----ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~------~~~~~~l~~~~~~  159 (337)
                      .|.+.    .+++++|.++..+|+|++|+.++++++++.+..      ..+...++.+...
T Consensus       188 ~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~  248 (293)
T 2qfc_A          188 LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK  248 (293)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHH
T ss_pred             cCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            66543    688888888888888888888888888775321      4455666666554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.15  E-value=2.7e-10  Score=94.98  Aligned_cols=99  Identities=17%  Similarity=0.270  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhh---
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD-------YPK-----VKLRAAQCLFHLKKFEDCTHLCDELLKE---  142 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~-------~~k-----a~~r~a~a~~~lg~~~eA~~~~~~al~l---  142 (337)
                      .+..+.|+|.+++++|+|++|+..|++||+++|+       +..     +|.++|.|+..+|+|++|+.+|+++|++   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4577899999999999999999999999999999       554     9999999999999999999999999999   


Q ss_pred             ----CCCCHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy5660         143 ----NPTDSTVI----DLRTSCINK---HKEILRNERKQAQQVKK  176 (337)
Q Consensus       143 ----~P~~~~~~----~~l~~~~~~---~~~~~~~~~k~~~~~~~  176 (337)
                          +|++..++    ..++.+...   ..++...+.+.......
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~  134 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  134 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence                99999988    888888766   44455555665554443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.15  E-value=6.9e-10  Score=104.48  Aligned_cols=122  Identities=12%  Similarity=0.210  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCC
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL------KPD  111 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l------~P~  111 (337)
                      ...+..+...|..++..|+|++|+.+|+++++..|.++...+.++.++|.++..+|++++|+..+++|+.+      +|.
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  124 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence            47788889999999999999999999999999999988777889999999999999999999999999998      677


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHH
Q psy5660         112 YPKVKLRAAQCLFHLKKFEDCTHLCDELLKE------NPTDSTVIDLRTSCINK  159 (337)
Q Consensus       112 ~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l------~P~~~~~~~~l~~~~~~  159 (337)
                      ...+++.+|.++..+|++++|+.++++++++      .|....+...++.+...
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  178 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA  178 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999998      33334455555555443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.14  E-value=2.4e-09  Score=84.90  Aligned_cols=82  Identities=15%  Similarity=0.159  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      .+..+.++|.+++..|+|.+|+..+++++.++|.+..+++.+|.++..+|++++|+.+++++++++|++..+...++.+.
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   87 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   87 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999998888887


Q ss_pred             HH
Q psy5660         158 NK  159 (337)
Q Consensus       158 ~~  159 (337)
                      ..
T Consensus        88 ~~   89 (137)
T 3q49_B           88 LE   89 (137)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.14  E-value=5.9e-10  Score=85.03  Aligned_cols=69  Identities=17%  Similarity=0.255  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD  146 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~  146 (337)
                      .+..+.++|.+++..|+|.+|+..+++|++++|.+..+++++|.++..+|++++|+.+|+++++++|++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            467899999999999999999999999999999999999999999999999999999999999999998

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.13  E-value=1.3e-09  Score=90.14  Aligned_cols=83  Identities=12%  Similarity=0.050  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660          77 VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus        77 ~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      ..+..+.++|.+++..|+|++|+..+++|++++|.+..+++.+|.++..+|++++|+.+|+++++++|++..+...++.+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   88 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            37789999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHH
Q psy5660         157 INK  159 (337)
Q Consensus       157 ~~~  159 (337)
                      ...
T Consensus        89 ~~~   91 (164)
T 3sz7_A           89 RFD   91 (164)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            766

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.12  E-value=1.3e-09  Score=99.76  Aligned_cols=125  Identities=13%  Similarity=-0.012  Sum_probs=107.5

Q ss_pred             hccc-cCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660          26 QQLK-YDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQI  104 (337)
Q Consensus        26 qaL~-~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~  104 (337)
                      +++. .+|      ..+..+...|..+.+.|++++|...|+++++..|.+..   .+|.++|.++.++|++++|+..+++
T Consensus        89 rAl~~~~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~  159 (308)
T 2ond_A           89 RAISTLLK------KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHTTTTT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHhCc------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc---HHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            4566 566      55678899999999999999999999999999998542   2899999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         105 ALKLKPDYPKVKLRAAQCLFH-LKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       105 Al~l~P~~~ka~~r~a~a~~~-lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      |++.+|.+..++...|..... +|++++|...|+++++++|++..+...+..+...
T Consensus       160 a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  215 (308)
T 2ond_A          160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH  215 (308)
T ss_dssp             HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            999999998888866666443 7999999999999999999998888777766543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.11  E-value=5.5e-11  Score=115.82  Aligned_cols=102  Identities=14%  Similarity=0.167  Sum_probs=93.7

Q ss_pred             hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---------------HHHHHH
Q psy5660          54 CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---------------PKVKLR  118 (337)
Q Consensus        54 ~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---------------~ka~~r  118 (337)
                      .++|++|+..|.+++..+|.    .+..|.++|.+++++|+|.+|+..|++|++++|.+               ..+|++
T Consensus       247 l~~~~~A~~~~~~~~~~~~~----~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n  322 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLE----QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN  322 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHHHH----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHH
Confidence            35677888888888888877    78999999999999999999999999999999998               799999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +|.|+..+|+|++|+.+|+++++++|++..+...++.+...
T Consensus       323 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~  363 (457)
T 1kt0_A          323 LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL  363 (457)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998888887765

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.11  E-value=2.5e-10  Score=104.83  Aligned_cols=119  Identities=12%  Similarity=0.056  Sum_probs=94.1

Q ss_pred             ccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC--chHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660          27 QLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD--NDVNAQLYNNRAASNFFLKNYRSCLTDCQI  104 (337)
Q Consensus        27 aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~--~~~~~~~~~nra~~~~~lg~~~~Al~d~~~  104 (337)
                      ++...++.+.+...+..+.+.|..+.. |+|++|+.+|++|+++.+..  ......++.|+|.++..+|+|++|+..+++
T Consensus       102 Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  180 (307)
T 2ifu_A          102 ASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK  180 (307)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            344432345666778888899999888 99999999999999887643  223467888999999999999999999999


Q ss_pred             HHhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660         105 ALKLKPDY------PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS  147 (337)
Q Consensus       105 Al~l~P~~------~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~  147 (337)
                      |+.+.|.+      ..+++.+|.++..+|++++|+.+|++++ ++|+..
T Consensus       181 al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          181 EKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            99886644      3477888889999999999999999999 888754

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.11  E-value=2e-09  Score=85.12  Aligned_cols=80  Identities=10%  Similarity=-0.057  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660          80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus        80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ..+.++|.++++.|++.+|+..+++|++++|++..+++.+|.++..+|++++|+.+|+++++++|++..+...++.+...
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999998888877654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.11  E-value=3.3e-10  Score=109.26  Aligned_cols=108  Identities=14%  Similarity=0.121  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHccccCCchH--HHHHHHHHHHHHHH---ccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDV--NAQLYNNRAASNFF---LKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~--~~~~~~nra~~~~~---lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      +...|..+++.|++++|+..|.+++...|.++..  ...++.++|.++..   +|++++|+..+++++.++|++..+++.
T Consensus       375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  454 (514)
T 2gw1_A          375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG  454 (514)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            3444444444444444444444444444432210  01244445555554   455555555555555555555555555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVID  151 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~  151 (337)
                      +|.++..+|++++|+.+++++++++|++..+..
T Consensus       455 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  487 (514)
T 2gw1_A          455 LAQMKLQQEDIDEAITLFEESADLARTMEEKLQ  487 (514)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhccccHHHHH
Confidence            555555555555555555555555554444433

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.11  E-value=1.5e-09  Score=107.19  Aligned_cols=116  Identities=11%  Similarity=-0.020  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .+..+...|..+.+.|++++|+..|.++++..|.    ....|.++|.++.+.|++++|+..++++++.+|.+..++..+
T Consensus       372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  447 (597)
T 2xpi_A          372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ----FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL  447 (597)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence            3455666677777777777777777777776665    345666677777777777777777777777777777777777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      |.++...|++++|+..++++++++|.+..+...+..+...
T Consensus       448 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  487 (597)
T 2xpi_A          448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN  487 (597)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            7777777777777777777777777666665555555433

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.10  E-value=1.9e-09  Score=101.25  Aligned_cols=125  Identities=14%  Similarity=0.050  Sum_probs=105.0

Q ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC---chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q psy5660          35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD---NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD  111 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~---~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~  111 (337)
                      ..+...+..+...|..++..|++..|+.+|.+|+++.+..   ....+.++.++|.++..+|+|++|+..+++|+++.+.
T Consensus       137 ~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  216 (383)
T 3ulq_A          137 KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA  216 (383)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            4566789999999999999999999999999999986543   2346789999999999999999999999999988654


Q ss_pred             CH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----C-CCCHHHHHHHHHHHHH
Q psy5660         112 YP------KVKLRAAQCLFHLKKFEDCTHLCDELLKE-----N-PTDSTVIDLRTSCINK  159 (337)
Q Consensus       112 ~~------ka~~r~a~a~~~lg~~~eA~~~~~~al~l-----~-P~~~~~~~~l~~~~~~  159 (337)
                      ..      .+++++|.++..+|++++|+.++++++++     + |....+...++.+...
T Consensus       217 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  276 (383)
T 3ulq_A          217 EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK  276 (383)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence            32      58899999999999999999999999994     5 6666667777776654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.10  E-value=4.3e-11  Score=117.36  Aligned_cols=113  Identities=23%  Similarity=0.325  Sum_probs=98.2

Q ss_pred             HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660          24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ  103 (337)
Q Consensus        24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~  103 (337)
                      +.+++..+|      ..+..+.+.|..+++.|+|++|+.+|++|++++|+    .+.+|.|+|.++..+|++++|+..++
T Consensus        29 ~~~Al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----~~~~~~~lg~~~~~~g~~~eA~~~~~   98 (477)
T 1wao_1           29 YSQAIELNP------SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK----YIKGYYRRAASNMALGKFRAALRDYE   98 (477)
T ss_dssp             HHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT----CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHhCC------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            344677777      45889999999999999999999999999999998    56899999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHhhCCCC
Q psy5660         104 IALKLKPDYPKVKLRAAQC--LFHLKKFEDCTHLCD-----------ELLKENPTD  146 (337)
Q Consensus       104 ~Al~l~P~~~ka~~r~a~a--~~~lg~~~eA~~~~~-----------~al~l~P~~  146 (337)
                      +|++++|++..++..++.+  +...|++++|++.++           +++.++|+.
T Consensus        99 ~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           99 TVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            9999999999999999988  889999999999999           888887764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.10  E-value=6.1e-10  Score=104.74  Aligned_cols=108  Identities=12%  Similarity=0.130  Sum_probs=98.3

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hC
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA--DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK-----LK  109 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~--~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~-----l~  109 (337)
                      ....+..+...|..+...|+|++|+.+|.+|++..+.  +....+.++.|+|.++..+|++++|+..+++|++     .+
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~  259 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI  259 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence            5678899999999999999999999999999998653  3445678999999999999999999999999999     46


Q ss_pred             -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q psy5660         110 -PDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP  144 (337)
Q Consensus       110 -P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P  144 (337)
                       |....+++.+|.++..+|++++|+.++++++++.+
T Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence             88899999999999999999999999999999843

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.09  E-value=2e-09  Score=97.01  Aligned_cols=107  Identities=17%  Similarity=0.228  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL------KPDYP  113 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l------~P~~~  113 (337)
                      .+..+...|..++..|+|++|+.+|+++++..|.++.....++.++|.++..+|++.+|+..+++|+.+      .|...
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            456778899999999999999999999999999987777889999999999999999999999999988      55667


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660         114 KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD  146 (337)
Q Consensus       114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~  146 (337)
                      .++..+|.++..+|++++|+..+++++++.+..
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  116 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISREL  116 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999886543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.09  E-value=2.9e-10  Score=86.74  Aligned_cols=68  Identities=12%  Similarity=0.079  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT  145 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~  145 (337)
                      .+.++.++|.+++.+|+|++|+..+++|++++|++..+|+.+|.++..+|++++|+.+|++++++.|.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            56889999999999999999999999999999999999999999999999999999999999988654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.08  E-value=1.6e-09  Score=95.60  Aligned_cols=105  Identities=23%  Similarity=0.204  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc----CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC----ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL-----  108 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p----~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l-----  108 (337)
                      ...+..+...|+.++..|++++|+.+|.+++....    .+......++.++|.++..+|++++|+..+++++++     
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  161 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL  161 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            47788999999999999999999999999999831    112237889999999999999999999999999999     


Q ss_pred             ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         109 ---KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       109 ---~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                         .|....++..+|.++..+|++++|+.++++++++
T Consensus       162 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          162 GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence               7778899999999999999999999999999987

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.08  E-value=6.7e-10  Score=103.64  Aligned_cols=107  Identities=17%  Similarity=0.240  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCC
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL------KPDY  112 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l------~P~~  112 (337)
                      ..+..+...|..++..|+|++|+.+|++++...|.++...+.++.++|.++..+|++.+|+..+++|+.+      .|..
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            4567788999999999999999999999999999887777889999999999999999999999999988      4556


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660         113 PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT  145 (337)
Q Consensus       113 ~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~  145 (337)
                      ..+++.+|.++..+|++++|+.++++++++.|.
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  119 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE  119 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence            789999999999999999999999999998664

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.07  E-value=1.1e-09  Score=103.03  Aligned_cols=109  Identities=15%  Similarity=0.038  Sum_probs=99.4

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc--CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hC
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC--ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK-----LK  109 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p--~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~-----l~  109 (337)
                      +...+..+...|..+...|+|++|+.+|.+|++..+  .+....+.++.|+|.++..+|++++|+..+++|+.     .+
T Consensus       178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~  257 (378)
T 3q15_A          178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP  257 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred             hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence            457899999999999999999999999999999754  34445788999999999999999999999999999     78


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660         110 PDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT  145 (337)
Q Consensus       110 P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~  145 (337)
                      |....+++.+|.++..+|++++|+.++++++++.+.
T Consensus       258 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999998543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.07  E-value=7.7e-10  Score=110.78  Aligned_cols=123  Identities=12%  Similarity=0.059  Sum_probs=113.4

Q ss_pred             ccccCCCCCChHHHHHHHHHHHHHHHHhCc----------HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc--C
Q psy5660          27 QLKYDPLENTPEELATTYKDEGNFNFKCNK----------YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK--N   94 (337)
Q Consensus        27 aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~----------y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg--~   94 (337)
                      +|..+|      +....+..+|..+.+.|+          |++|+.+|.++++.+|.    +..+|++|+.+..+++  +
T Consensus        55 ~l~~nP------~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK----~y~aW~hR~w~l~~l~~~~  124 (567)
T 1dce_A           55 ILGANP------DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK----SYGTWHHRCWLLSRLPEPN  124 (567)
T ss_dssp             HHHHCT------TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTCSSCC
T ss_pred             HHHHCc------hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccccc
Confidence            455666      667888899999998888          99999999999999999    6799999999999999  7


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660          95 YRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLK-KFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus        95 ~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg-~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +++|+..|.++++++|+|..||..++.++..+| .+++|+++++++++.+|.|..+...+..+...
T Consensus       125 ~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~  190 (567)
T 1dce_A          125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ  190 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence            799999999999999999999999999999999 99999999999999999999999888887654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.07  E-value=1.7e-10  Score=105.97  Aligned_cols=111  Identities=10%  Similarity=0.024  Sum_probs=81.1

Q ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q psy5660          35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA--DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY  112 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~--~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~  112 (337)
                      +.+...+..+.+.|+.+.+.|+|++|+.+|.+|+++.+.  +....+.++.|+|.++.. |++++|+..+++|+.+.|..
T Consensus        70 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~  148 (307)
T 2ifu_A           70 RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE  148 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC
Confidence            445566777778888888888888888888888777432  233346677788888877 88888888888888776543


Q ss_pred             ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660         113 ------PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD  146 (337)
Q Consensus       113 ------~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~  146 (337)
                            ..++.++|.++..+|++++|+.+|++++++.|.+
T Consensus       149 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          149 ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence                  4677778888888888888888888888776543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.07  E-value=2.6e-09  Score=88.08  Aligned_cols=99  Identities=13%  Similarity=0.199  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKL------------------KPDYPKVKLRAAQCLFHLKKFEDCTHLCDEL  139 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l------------------~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~a  139 (337)
                      .+..+.++|.++++.|+|.+|+..+.+|+.+                  +|.+..+|+++|.|+..+|++++|+.+|+++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            5678999999999999999999999999999                  7888899999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy5660         140 LKENPTDSTVIDLRTSCINK---HKEILRNERKQAQQVKK  176 (337)
Q Consensus       140 l~l~P~~~~~~~~l~~~~~~---~~~~~~~~~k~~~~~~~  176 (337)
                      ++++|++..+...++.+...   ..++.....+.......
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  129 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA  129 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence            99999999999999988776   33334444444444333

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.05  E-value=1.4e-10  Score=108.50  Aligned_cols=103  Identities=15%  Similarity=0.099  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ  121 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~  121 (337)
                      ..+.+.|..+++.|+|++|+.+|+++|+++|+    +..+|+++|.++..+|+|++|+.++++|++++|++..++..++.
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~  306 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK----NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRA  306 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            37889999999999999999999999999998    56899999999999999999999999999999999999999998


Q ss_pred             H-HHhcCCHHHHHHHHHHHHhhCCCCHH
Q psy5660         122 C-LFHLKKFEDCTHLCDELLKENPTDST  148 (337)
Q Consensus       122 a-~~~lg~~~eA~~~~~~al~l~P~~~~  148 (337)
                      + ....+..+.+...|++++...|++..
T Consensus       307 l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          307 LAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            8 45567888999999999999998754

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.05  E-value=2.6e-09  Score=98.74  Aligned_cols=117  Identities=10%  Similarity=-0.066  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHhhC
Q psy5660          39 ELATTYKDEGNFNFKCN--KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASN----FFL---KNYRSCLTDCQIALKLK  109 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g--~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~----~~l---g~~~~Al~d~~~Al~l~  109 (337)
                      +....+..+|..+...|  ++++|+.++.++|..+|.    +..+|.+|+.+.    ..+   +++.+++..|.++++.+
T Consensus        65 ~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk----~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~  140 (306)
T 3dra_A           65 SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK----NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD  140 (306)
T ss_dssp             TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT----CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc----cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC
Confidence            55667788888888888  899999999999999888    458888898888    666   78889999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         110 PDYPKVKLRAAQCLFHLKKFE--DCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       110 P~~~ka~~r~a~a~~~lg~~~--eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      |+|..+|..++.++..+|+++  +++++++++++++|.|-.+...+..+...
T Consensus       141 pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~  192 (306)
T 3dra_A          141 PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS  192 (306)
T ss_dssp             TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            999999999999999999888  99999999999999998888777766544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.04  E-value=2.9e-10  Score=94.62  Aligned_cols=80  Identities=18%  Similarity=0.167  Sum_probs=71.5

Q ss_pred             HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc
Q psy5660          24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKY----------RNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK   93 (337)
Q Consensus        24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y----------~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg   93 (337)
                      +-+++..+|      ..++.+.+.|+.+...+++          ++|+.+|++||+++|+    ...+|+|+|.+|..+|
T Consensus        25 ~~~Ai~l~P------~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~----~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           25 AENTYKSNP------LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK----KDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHCT------TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCC------CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC----cHHHHHHHHHHHHHhc
Confidence            444677788      7889999999999998875          5999999999999999    6799999999999885


Q ss_pred             -----------CHHHHHHHHHHHHhhCCCCH
Q psy5660          94 -----------NYRSCLTDCQIALKLKPDYP  113 (337)
Q Consensus        94 -----------~~~~Al~d~~~Al~l~P~~~  113 (337)
                                 ++++|+..|++|++++|++.
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence                       89999999999999999975

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.03  E-value=1e-09  Score=88.23  Aligned_cols=111  Identities=14%  Similarity=0.185  Sum_probs=96.0

Q ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-
Q psy5660          35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA--DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD-  111 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~--~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~-  111 (337)
                      ..+...+..+...|..++..|++++|+.+|.+++...+.  ++.....++.++|.++..+|++++|+..+++++.+.+. 
T Consensus        43 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  122 (164)
T 3ro3_A           43 GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL  122 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence            456677889999999999999999999999999987653  34446789999999999999999999999999987432 


Q ss_pred             -----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660         112 -----YPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT  145 (337)
Q Consensus       112 -----~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~  145 (337)
                           ...++..+|.++..+|++++|+.++++++++...
T Consensus       123 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          123 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence                 2578899999999999999999999999987543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.02  E-value=1.1e-09  Score=85.01  Aligned_cols=86  Identities=17%  Similarity=0.161  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .+..+...|..++..|++++|+.+|.+++...|.    ...++.++|.++..+|++++|+..++++++++|.+..+++.+
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  120 (131)
T 2vyi_A           45 NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA----YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL  120 (131)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHH
Confidence            4678889999999999999999999999999998    458899999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCH
Q psy5660         120 AQCLFHLKKF  129 (337)
Q Consensus       120 a~a~~~lg~~  129 (337)
                      |.++..+|++
T Consensus       121 ~~~~~~~~~~  130 (131)
T 2vyi_A          121 KIAELKLREA  130 (131)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHhcC
Confidence            9999999875

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.02  E-value=6.9e-09  Score=93.02  Aligned_cols=105  Identities=16%  Similarity=0.062  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC----CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA----DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL------  108 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~----~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l------  108 (337)
                      ..+..+...|..++..|++++|+.+|+++++....    +......++.++|.++..+|++++|+..+++|+.+      
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            67778888888888888888888888888875211    22336677888888888888888888888888877      


Q ss_pred             --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660         109 --KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN  143 (337)
Q Consensus       109 --~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~  143 (337)
                        .|....+++.+|.++..+|++++|+.++++++++.
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  141 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR  141 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence              35566788888888888888888888888888773

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.02  E-value=7.9e-09  Score=93.79  Aligned_cols=102  Identities=16%  Similarity=0.095  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCch--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADND--VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY----  112 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~--~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~----  112 (337)
                      +....+.+++..++..|+|++|+..|.++++..+....  .....+.++|.++...|++++|+..+++|+.+.+..    
T Consensus        73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  152 (293)
T 2qfc_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY  152 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence            44555566666666666666666666666665544332  233444556666666666666666666666554332    


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy5660         113 --PKVKLRAAQCLFHLKKFEDCTHLCDELL  140 (337)
Q Consensus       113 --~ka~~r~a~a~~~lg~~~eA~~~~~~al  140 (337)
                        ..++..+|.++..+|++++|+.+|++++
T Consensus       153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal  182 (293)
T 2qfc_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQIL  182 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence              3456666666666666666666666666

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.02  E-value=4.1e-09  Score=89.02  Aligned_cols=105  Identities=9%  Similarity=0.029  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---CC---
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA--DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL---KP---  110 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~--~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l---~P---  110 (337)
                      ..+..+...|..++..|+|++|+.+|.+++.....  +....+.++.++|.++..+|++++|+..+++|+.+   .+   
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  103 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP  103 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence            56889999999999999999999999999995432  33347889999999999999999999999999998   34   


Q ss_pred             -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660         111 -DYPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN  143 (337)
Q Consensus       111 -~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~  143 (337)
                       ....+++.+|.++..+|++++|+.++++++.+.
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (203)
T 3gw4_A          104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYA  137 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence             235778999999999999999999999999874

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.01  E-value=1.1e-09  Score=93.34  Aligned_cols=108  Identities=11%  Similarity=-0.001  Sum_probs=86.2

Q ss_pred             HHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH--------------
Q psy5660          48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP--------------  113 (337)
Q Consensus        48 Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~--------------  113 (337)
                      |......|.|+.|.+.|.......+.    .+..+.++|.+++..|+|.+|+..+++|+.+.|.+.              
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~   86 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEEKVQ----SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI   86 (198)
T ss_dssp             -----------CCCSGGGCCHHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred             hhhhhhhhhccccCchhhCCHHHHHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence            33344456677777777655554444    678899999999999999999999999999999887              


Q ss_pred             --HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         114 --KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       114 --ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                        .+++++|.++..+|++++|+.+|+++++++|++..+...++.+...
T Consensus        87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  134 (198)
T 2fbn_A           87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY  134 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence              8999999999999999999999999999999999998888887655

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.01  E-value=1.6e-08  Score=94.14  Aligned_cols=125  Identities=13%  Similarity=0.139  Sum_probs=105.1

Q ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC--chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q psy5660          35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD--NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY  112 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~--~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~  112 (337)
                      +.+...+..+...|..++..|+|++|+.+|.+++...+..  ....+.++.++|.++..+|++++|+..+++++.+.|..
T Consensus       181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  260 (406)
T 3sf4_A          181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL  260 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence            3455778899999999999999999999999999987643  33456699999999999999999999999999998766


Q ss_pred             ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q psy5660         113 ------PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD------STVIDLRTSCINK  159 (337)
Q Consensus       113 ------~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~------~~~~~~l~~~~~~  159 (337)
                            ..++..+|.++..+|++++|+.++++++++.+..      ..+...++.+...
T Consensus       261 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~  319 (406)
T 3sf4_A          261 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA  319 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence                  7899999999999999999999999999986543      3344555555443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.01  E-value=3.7e-09  Score=79.44  Aligned_cols=68  Identities=9%  Similarity=0.057  Sum_probs=65.5

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660          83 NNRAASNFFLKNYRSCLTDCQIALKLKPDYPK-VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVI  150 (337)
Q Consensus        83 ~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k-a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~  150 (337)
                      .++|.+++..|+|.+|+..++++++.+|.+.. +++.+|.++..+|++++|+.+|+++++++|++..+.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            57899999999999999999999999999999 999999999999999999999999999999998776

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.00  E-value=4.4e-09  Score=98.80  Aligned_cols=121  Identities=13%  Similarity=-0.052  Sum_probs=69.5

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc---hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC---
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN---DVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP---  110 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~---~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P---  110 (337)
                      +...+..+...|..++..|++..|+.+|.+|++..+...   ...+.++.++|.++..+|+|++|+..+.+|+++.+   
T Consensus       137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~  216 (378)
T 3q15_A          137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ  216 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence            445566666666666666666666666666666544321   12455666666666666666666666666666522   


Q ss_pred             ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHH
Q psy5660         111 ---DYPKVKLRAAQCLFHLKKFEDCTHLCDELLK-----ENPTDSTVIDLRTSCI  157 (337)
Q Consensus       111 ---~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~-----l~P~~~~~~~~l~~~~  157 (337)
                         ....++.++|.++..+|++++|+.+++++++     .+|....+...++.+.
T Consensus       217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~  271 (378)
T 3q15_A          217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL  271 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence               1134556666666666666666666666666     4444444444444443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.00  E-value=5.3e-09  Score=94.94  Aligned_cols=107  Identities=16%  Similarity=0.117  Sum_probs=85.5

Q ss_pred             ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHH--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-
Q psy5660          36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVN--AQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY-  112 (337)
Q Consensus        36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~--~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~-  112 (337)
                      +..+....+.+.+..++..|+|++|+..|.+++...+..+...  ...+.++|.++...|++++|+..+++|+.+.+.. 
T Consensus        70 ~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~  149 (293)
T 3u3w_A           70 SDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI  149 (293)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS
T ss_pred             CcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc
Confidence            3346777788888889999999999999999998887766654  4556668888888889999999999998865432 


Q ss_pred             -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         113 -----PKVKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       113 -----~ka~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                           ..++..+|.++..+|++++|+.+|++++++
T Consensus       150 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  184 (293)
T 3u3w_A          150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ  184 (293)
T ss_dssp             CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                 347888899999999999999999998853

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.00  E-value=1.1e-08  Score=79.89  Aligned_cols=83  Identities=19%  Similarity=0.271  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660          77 VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus        77 ~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      .....+.++|.+++..|++.+|+..++++++.+|.+..+++.+|.++..+|++++|+.+++++++++|++..+...++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            37789999999999999999999999999999999999999999999999999999999999999999999988888887


Q ss_pred             HHH
Q psy5660         157 INK  159 (337)
Q Consensus       157 ~~~  159 (337)
                      ...
T Consensus        94 ~~~   96 (133)
T 2lni_A           94 LEA   96 (133)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            655

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.00  E-value=4.1e-09  Score=94.52  Aligned_cols=122  Identities=23%  Similarity=0.215  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc----CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC----
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC----ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK----  109 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p----~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~----  109 (337)
                      ...+..+...|..++..|++++|+.+|.+++....    .+......++.++|.++..+|++++|+..+++++++.    
T Consensus        66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (311)
T 3nf1_A           66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL  145 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc
Confidence            46778889999999999999999999999998741    1223478899999999999999999999999999884    


Q ss_pred             ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHH
Q psy5660         110 ----PDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE--------NPTDSTVIDLRTSCINK  159 (337)
Q Consensus       110 ----P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l--------~P~~~~~~~~l~~~~~~  159 (337)
                          |....++..+|.++...|++++|+.++++++++        +|....+...++.+...
T Consensus       146 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  207 (311)
T 3nf1_A          146 GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK  207 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence                666789999999999999999999999999998        44445555666665543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.99  E-value=9e-10  Score=100.06  Aligned_cols=118  Identities=14%  Similarity=0.177  Sum_probs=92.6

Q ss_pred             hccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660          26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA  105 (337)
Q Consensus        26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A  105 (337)
                      +++..+|      ..+..+.+.|..+++.|+|++|+..|+++++++|+    +..+++++|.++..+|++++|+..+++|
T Consensus        29 ~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~a   98 (281)
T 2c2l_A           29 RAITRNP------LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ----SVKAHFFLGQCQLEMESYDEAIANLQRA   98 (281)
T ss_dssp             HHHHHCS------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhCC------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4566676      45788999999999999999999999999999998    5689999999999999999999999999


Q ss_pred             HhhCCCCH-------HHHHHHHH----------------------HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660         106 LKLKPDYP-------KVKLRAAQ----------------------CLFHLKKFEDCTHLCDELLKENPTDSTVIDLR  153 (337)
Q Consensus       106 l~l~P~~~-------ka~~r~a~----------------------a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l  153 (337)
                      ++++|++.       ...++.+.                      ..+..|++++|++.++++++++|++..+...+
T Consensus        99 l~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~l  175 (281)
T 2c2l_A           99 YSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQ  175 (281)
T ss_dssp             HHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSCHHHHTHHH
T ss_pred             HHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhHH
Confidence            99998652       11111111                      11135677888888888888888776555444

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.99  E-value=1.3e-09  Score=85.19  Aligned_cols=75  Identities=19%  Similarity=0.119  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL  117 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~  117 (337)
                      ..+..+...|..++..|+|++|+.+|+++++..|+    ...++.++|.|+..+|++++|+..+++++..+|++.....
T Consensus        25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN----HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            78899999999999999999999999999999999    4689999999999999999999999999999999986543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.98  E-value=9.9e-10  Score=92.11  Aligned_cols=82  Identities=15%  Similarity=-0.038  Sum_probs=75.6

Q ss_pred             cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCHHHHH
Q psy5660          56 KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY--PKVKLRAAQCLFHLKKFEDCT  133 (337)
Q Consensus        56 ~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~--~ka~~r~a~a~~~lg~~~eA~  133 (337)
                      ....|+..|.++++.+|+    +..++.++|.++..+|++++|+..++++++++|.+  ..++..+|.++..+|+.++|+
T Consensus        89 ~~~~a~~~~~~al~~~P~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           89 AESPELKRLEQELAANPD----NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             TSCHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             ccchHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            344689999999999998    56899999999999999999999999999999986  569999999999999999999


Q ss_pred             HHHHHHHh
Q psy5660         134 HLCDELLK  141 (337)
Q Consensus       134 ~~~~~al~  141 (337)
                      ..|+++|.
T Consensus       165 ~~y~~al~  172 (176)
T 2r5s_A          165 SKYRRQLY  172 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999875

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.97  E-value=1.1e-08  Score=93.08  Aligned_cols=108  Identities=9%  Similarity=-0.074  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--CC-CHHHHHHH
Q psy5660          43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK--PD-YPKVKLRA  119 (337)
Q Consensus        43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~--P~-~~ka~~r~  119 (337)
                      .....|..+++.|+|.+|+.++++++...  ++.....+++++|.++..+|++++|+..+++|+.-.  |. ...+++++
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~  214 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYL  214 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHH
Confidence            77889999999999999999998776643  222235688889999999999999999999998654  55 66789999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLR  153 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l  153 (337)
                      |.|+..+|+.++|...+++++..+|+ ..+...+
T Consensus       215 glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          215 AMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            99999999999999999999999998 6655443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.95  E-value=4.3e-09  Score=100.99  Aligned_cols=114  Identities=14%  Similarity=0.037  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHH---hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCH
Q psy5660          41 ATTYKDEGNFNFK---CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF----LKNYRSCLTDCQIALKLKPDYP  113 (337)
Q Consensus        41 A~~~k~~Gn~~~k---~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~----lg~~~~Al~d~~~Al~l~P~~~  113 (337)
                      +..+...|+.++.   .+++++|+..|.+|++++|.    ...++.++|.++..    .|++.+|+..+++|+.++|.+.
T Consensus       172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~----~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~  247 (472)
T 4g1t_A          172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD----NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT  247 (472)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS----CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc----chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHH
Confidence            3344444544433   24455666666666666665    33556666665544    4677889999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         114 KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      .++..+|.++...|++++|+..++++++++|++..+...++.+..
T Consensus       248 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~  292 (472)
T 4g1t_A          248 DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR  292 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988887776654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.94  E-value=2.9e-09  Score=100.94  Aligned_cols=93  Identities=19%  Similarity=0.223  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ..+..+.+.|..+++.|+|++|+.+|++|++++|+    ++.+|+++|.++..+|+|++|+.++++|++++|++..++..
T Consensus       271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~  346 (370)
T 1ihg_A          271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS----NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE  346 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            56788899999999999999999999999999998    56899999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHL  135 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~  135 (337)
                      ++.++..++++++|.+.
T Consensus       347 l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          347 LLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999998888654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.94  E-value=1.6e-08  Score=94.39  Aligned_cols=129  Identities=12%  Similarity=0.057  Sum_probs=112.5

Q ss_pred             hHHHhh-ccccCCCCCChHHHHHHHHHHHHHHHHhCc----------HHHHHHHHHHHHccccCCchHHHHHHHHHHHHH
Q psy5660          21 LVEGLQ-QLKYDPLENTPEELATTYKDEGNFNFKCNK----------YRNAIINYTEGLKIKCADNDVNAQLYNNRAASN   89 (337)
Q Consensus        21 ~lealq-aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~----------y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~   89 (337)
                      .|++.. +|..+|      +....+..+|..+...++          +.+++.++..++..+|.    +..+|++|+.+.
T Consensus        49 aL~~t~~~L~~nP------~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK----ny~aW~hR~wlL  118 (331)
T 3dss_A           49 VLELTSQILGANP------DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK----SYGTWHHRCWLL  118 (331)
T ss_dssp             HHHHHHHHHTTCT------TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCc------hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHH
Confidence            455444 466777      666777777777766655          79999999999999999    679999999999


Q ss_pred             HHcc--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660          90 FFLK--NYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKK-FEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus        90 ~~lg--~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~-~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ..++  .+.+++..|.++++++|+|..||..++.+...+|. ++++++++.++++.+|.|..+...+..+...
T Consensus       119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~  191 (331)
T 3dss_A          119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ  191 (331)
T ss_dssp             HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            9999  49999999999999999999999999999999999 6999999999999999999998888877654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.93  E-value=4.5e-08  Score=75.05  Aligned_cols=82  Identities=13%  Similarity=0.242  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      ...++.++|.++...|++++|+..+.+++..+|.+..+++.+|.++...|++++|+.+++++++++|.+..+...++.+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999988887777766


Q ss_pred             HH
Q psy5660         158 NK  159 (337)
Q Consensus       158 ~~  159 (337)
                      ..
T Consensus        88 ~~   89 (125)
T 1na0_A           88 YK   89 (125)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.93  E-value=6.8e-09  Score=95.95  Aligned_cols=117  Identities=7%  Similarity=-0.070  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHH----HHh---CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHH--HHHHHHHHHHhhC
Q psy5660          39 ELATTYKDEGNFN----FKC---NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYR--SCLTDCQIALKLK  109 (337)
Q Consensus        39 e~A~~~k~~Gn~~----~k~---g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~--~Al~d~~~Al~l~  109 (337)
                      +....+..+|..+    ...   +++.+++.++.++++.+|.    +..+|++|+.+..++|.+.  +++..|.++++.+
T Consensus       101 k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk----ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d  176 (306)
T 3dra_A          101 KNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK----NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD  176 (306)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence            5566777778777    555   7899999999999999999    6799999999999999999  9999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         110 PDYPKVKLRAAQCLFHLKK------FEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       110 P~~~ka~~r~a~a~~~lg~------~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      |.|..||..++.++..+++      ++++++++++++.++|+|..+...+..+...
T Consensus       177 ~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~  232 (306)
T 3dra_A          177 LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHER  232 (306)
T ss_dssp             TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence            9999999999999999998      9999999999999999999998877776654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.93  E-value=3.4e-08  Score=75.09  Aligned_cols=82  Identities=9%  Similarity=0.065  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      .+..+.++|.+++..|++++|+..+++++..+|.+..+++.+|.++..+|++++|+..++++++++|++..+...++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999998888887776


Q ss_pred             HH
Q psy5660         158 NK  159 (337)
Q Consensus       158 ~~  159 (337)
                      ..
T Consensus        83 ~~   84 (118)
T 1elw_A           83 EF   84 (118)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.92  E-value=4.6e-09  Score=79.42  Aligned_cols=82  Identities=16%  Similarity=0.293  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHH
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT--DSTVIDLRTS  155 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~--~~~~~~~l~~  155 (337)
                      ...++.++|.++...|++.+|+..++++++++|.+..+++.+|.++..+|++++|+.+++++++++|+  +..+...++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999  8888877777


Q ss_pred             HHHH
Q psy5660         156 CINK  159 (337)
Q Consensus       156 ~~~~  159 (337)
                      +...
T Consensus        85 ~~~~   88 (112)
T 2kck_A           85 ALRY   88 (112)
T ss_dssp             HHTT
T ss_pred             HHHH
Confidence            6543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.92  E-value=3.7e-08  Score=87.76  Aligned_cols=108  Identities=8%  Similarity=-0.015  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF----LKNYRSCLTDCQIALKLKPDYPKV  115 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~----lg~~~~Al~d~~~Al~l~P~~~ka  115 (337)
                      .+..+...|..++..|++++|+.+|+++++  ++    ...++.++|.++..    .+++++|+..+++|++++  ++.+
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a   76 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNG   76 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHH
Confidence            345566666666666677777777766666  32    23556666666666    666666666666666664  5666


Q ss_pred             HHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660         116 KLRAAQCLFH----LKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus       116 ~~r~a~a~~~----lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      ++.+|.++..    .+++++|+.+|+++++.  ++..+...++.+.
T Consensus        77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~  120 (273)
T 1ouv_A           77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIY  120 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHH
Confidence            6666666666    66666666666666665  2555555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.92  E-value=4.1e-09  Score=105.53  Aligned_cols=122  Identities=10%  Similarity=-0.020  Sum_probs=110.7

Q ss_pred             ccccCCCCCChHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc-CHHHHHHHHH
Q psy5660          27 QLKYDPLENTPEELATTYKDEGNFNFKCN--KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK-NYRSCLTDCQ  103 (337)
Q Consensus        27 aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g--~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg-~~~~Al~d~~  103 (337)
                      +|..+|      +...++..+|..+.+.+  +|++|+.+|.++++.+|.    +..+|++|+.+..++| .+++++.++.
T Consensus        99 ~l~~~p------K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~----N~~aW~~R~~~l~~l~~~~~~el~~~~  168 (567)
T 1dce_A           99 CLRVNP------KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER----NFHCWDYRRFVAAQAAVAPAEELAFTD  168 (567)
T ss_dssp             HHHHCT------TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred             HHHhCC------CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc----cccHHHHHHHHHHHcCCChHHHHHHHH
Confidence            355677      77888999999999999  779999999999999999    6799999999999999 9999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         104 IALKLKPDYPKVKLRAAQCLFHL--------------KKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       104 ~Al~l~P~~~ka~~r~a~a~~~l--------------g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      ++|+.+|.|..||..++.++..+              +.+++|++++++++.++|+|..+...+..+..
T Consensus       169 ~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~  237 (567)
T 1dce_A          169 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG  237 (567)
T ss_dssp             TTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred             HHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Confidence            99999999999999999999886              67899999999999999999999887766543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.92  E-value=1e-08  Score=96.31  Aligned_cols=115  Identities=16%  Similarity=0.165  Sum_probs=98.1

Q ss_pred             ccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc--CCchHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660          27 QLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC--ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQI  104 (337)
Q Consensus        27 aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p--~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~  104 (337)
                      ++..+|  ..+...+..+...|..++..|+|++|+.+|.++++...  .+......++.++|.++..+|++.+|+..+++
T Consensus        74 al~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  151 (411)
T 4a1s_A           74 AIQAGT--EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCER  151 (411)
T ss_dssp             HHHHCC--SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHhcc--cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            455555  56667788999999999999999999999999998731  22234778999999999999999999999999


Q ss_pred             HHhh------CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHhhC
Q psy5660         105 ALKL------KPDYPKVKLRAAQCLFHLKK-----------------FEDCTHLCDELLKEN  143 (337)
Q Consensus       105 Al~l------~P~~~ka~~r~a~a~~~lg~-----------------~~eA~~~~~~al~l~  143 (337)
                      |+.+      .|....++..+|.++..+|+                 +++|+.++++++++.
T Consensus       152 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~  213 (411)
T 4a1s_A          152 HLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM  213 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9998      66677899999999999999                 999999999998874

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.90  E-value=1.2e-08  Score=95.70  Aligned_cols=113  Identities=12%  Similarity=0.010  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHhC-cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660          41 ATTYKDEGNFNFKCN-KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL-K-NYRSCLTDCQIALKLKPDYPKVKL  117 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g-~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l-g-~~~~Al~d~~~Al~l~P~~~ka~~  117 (337)
                      ...+..+|..+...| .+++|+.+++++|..+|.    +..+|++|+.+...+ + ++.+++..|.++++.+|+|..||.
T Consensus        88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK----ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~  163 (349)
T 3q7a_A           88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK----SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWA  163 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC----CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHH
Confidence            344445555555555 355555555555555555    445555555555555 4 555555555555555555555555


Q ss_pred             HHHHHHHhcCCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660         118 RAAQCLFHLKKFE--------DCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus       118 r~a~a~~~lg~~~--------eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      .++.++..+|+++        +++++++++++++|.|..+...+..+.
T Consensus       164 ~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL  211 (349)
T 3q7a_A          164 YLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLR  211 (349)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            5555555555555        555555555555555555555554443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.90  E-value=5.3e-08  Score=95.66  Aligned_cols=115  Identities=11%  Similarity=0.065  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccc-----cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----C
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIK-----CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL-----K  109 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~-----p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l-----~  109 (337)
                      .+....+.+..+..+|+|++|+..|.++++..     ++. ...+..+.|+|.+|..+|+|++|+..+++||.+     .
T Consensus       308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~H-p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG  386 (490)
T 3n71_A          308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTN-LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH  386 (490)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTS-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence            35556677777888999999999999999863     332 237889999999999999999999999999986     4


Q ss_pred             CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHH
Q psy5660         110 PDYP---KVKLRAAQCLFHLKKFEDCTHLCDELLKE-----NPTDSTVIDLRTS  155 (337)
Q Consensus       110 P~~~---ka~~r~a~a~~~lg~~~eA~~~~~~al~l-----~P~~~~~~~~l~~  155 (337)
                      |+++   .++.++|.+|..+|++++|+..|++++.+     .|+++....++..
T Consensus       387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~  440 (490)
T 3n71_A          387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAM  440 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            5554   77889999999999999999999999976     6888776665533

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.88  E-value=2e-08  Score=84.71  Aligned_cols=109  Identities=7%  Similarity=-0.054  Sum_probs=93.8

Q ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc---ccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-
Q psy5660          35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKI---KCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP-  110 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~---~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P-  110 (337)
                      +.+...+..+...|..+...|++++|+.+|.+++..   .++++...+.++.|+|.++..+|++++|+..+++++.+.+ 
T Consensus        60 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  139 (203)
T 3gw4_A           60 GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ  139 (203)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            456688899999999999999999999999999998   3333335788999999999999999999999999997642 


Q ss_pred             -CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660         111 -DY----PKVKLRAAQCLFHLKKFEDCTHLCDELLKEN  143 (337)
Q Consensus       111 -~~----~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~  143 (337)
                       .+    ..++..+|.++..+|++++|+.++++++++.
T Consensus       140 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          140 ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF  177 (203)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence             22    3456899999999999999999999999874

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.88  E-value=1.8e-08  Score=83.04  Aligned_cols=97  Identities=12%  Similarity=0.046  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHhcCCHHH
Q psy5660          57 YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK---NYRSCLTDCQIALKLK-P-DYPKVKLRAAQCLFHLKKFED  131 (337)
Q Consensus        57 y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg---~~~~Al~d~~~Al~l~-P-~~~ka~~r~a~a~~~lg~~~e  131 (337)
                      ...+.+.|.+.+..++.    ...+.+|.|.|+.+.+   ++++++..++..++.+ | .+..++|.+|.+++.+|+|++
T Consensus        14 l~~~~~~y~~e~~~~~~----~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~   89 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSV----SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHTTCC----CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHHccCCC----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence            45667788888876665    4588999999999988   7779999999999999 7 678999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660         132 CTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus       132 A~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      |.++++++|+++|+|..+..++..+.
T Consensus        90 A~~y~~~lL~ieP~n~QA~~Lk~~ie  115 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQNNQAKELERLID  115 (152)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            99999999999999999988776654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.88  E-value=5.5e-08  Score=76.03  Aligned_cols=80  Identities=13%  Similarity=0.041  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q psy5660          80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP---KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD---STVIDLR  153 (337)
Q Consensus        80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~---ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~---~~~~~~l  153 (337)
                      ..++++|.+++..|+|.+|+..++++++.+|++.   .+++.+|.++..+|++++|+.+|+++++.+|++   ..+...+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3467899999999999999999999999999998   899999999999999999999999999999999   7777777


Q ss_pred             HHHHHH
Q psy5660         154 TSCINK  159 (337)
Q Consensus       154 ~~~~~~  159 (337)
                      +.+...
T Consensus        83 a~~~~~   88 (129)
T 2xev_A           83 GLSQYG   88 (129)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777655

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=2.8e-08  Score=79.16  Aligned_cols=82  Identities=15%  Similarity=0.267  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT  154 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  154 (337)
                      .+..+.++|.+++..|+|.+|+..++++++++|++   ..+++.+|.++..+|++++|+.+|+++++++|++..+...++
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  106 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS  106 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence            56889999999999999999999999999999998   899999999999999999999999999999999988888887


Q ss_pred             HHHHH
Q psy5660         155 SCINK  159 (337)
Q Consensus       155 ~~~~~  159 (337)
                      .+...
T Consensus       107 ~~~~~  111 (148)
T 2dba_A          107 QALEK  111 (148)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77655

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.85  E-value=2.9e-08  Score=89.20  Aligned_cols=110  Identities=15%  Similarity=0.228  Sum_probs=97.0

Q ss_pred             ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-
Q psy5660          36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA--DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY-  112 (337)
Q Consensus        36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~--~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~-  112 (337)
                      .+...+..+...|..++..|++++|+.+|.+++...+.  +....+.++.++|.++..+|++++|+..+++++.+.+.. 
T Consensus       178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  257 (338)
T 3ro2_A          178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK  257 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence            34567788999999999999999999999999988653  333456699999999999999999999999999987765 


Q ss_pred             -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660         113 -----PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT  145 (337)
Q Consensus       113 -----~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~  145 (337)
                           ..+++.+|.++..+|++++|+.++++++++.+.
T Consensus       258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  295 (338)
T 3ro2_A          258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  295 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence                 788999999999999999999999999988653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.84  E-value=1e-08  Score=79.45  Aligned_cols=95  Identities=9%  Similarity=-0.008  Sum_probs=76.6

Q ss_pred             hHHHhh-ccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHH
Q psy5660          21 LVEGLQ-QLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL   99 (337)
Q Consensus        21 ~lealq-aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al   99 (337)
                      .++.++ ++..+|      ..+..+...|..++..|+|++|+.+|.+++..+|.    ...+|.++|.++..+|++++|+
T Consensus         4 a~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~   73 (115)
T 2kat_A            4 ITERLEAMLAQGT------DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT----YSVAWKWLGKTLQGQGDRAGAR   73 (115)
T ss_dssp             HHHHHHHHHTTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHhCC------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC----cHHHHHHHHHHHHHcCCHHHHH
Confidence            344444 566676      44678999999999999999999999999999998    5689999999999999999999


Q ss_pred             HHHHHHHhhCCC--CHHHHHHHHHHHHh
Q psy5660         100 TDCQIALKLKPD--YPKVKLRAAQCLFH  125 (337)
Q Consensus       100 ~d~~~Al~l~P~--~~ka~~r~a~a~~~  125 (337)
                      ..+++|++++|.  +..+...+...+..
T Consensus        74 ~~~~~al~~~~~~~~~~~~~~l~~~l~~  101 (115)
T 2kat_A           74 QAWESGLAAAQSRGDQQVVKELQVFLRR  101 (115)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccHHHHHHHHHHHHH
Confidence            999999999884  34444444444433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.83  E-value=3.6e-08  Score=91.94  Aligned_cols=127  Identities=10%  Similarity=-0.022  Sum_probs=110.5

Q ss_pred             hHHHhhc-cccCCCCCChHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccC-HH
Q psy5660          21 LVEGLQQ-LKYDPLENTPEELATTYKDEGNFNFKCN--KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKN-YR   96 (337)
Q Consensus        21 ~lealqa-L~~dp~~~~~~e~A~~~k~~Gn~~~k~g--~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~-~~   96 (337)
                      +++++.. |..+|      +....+..+|..+.+.+  .+++++.++.++++.+|.    +..+|++|+.+...+|. +.
T Consensus        93 EL~~~~~~L~~~P------Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr----Ny~AW~~R~~vl~~l~~~~~  162 (331)
T 3dss_A           93 ELGFLESCLRVNP------KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER----NFHCWDYRRFVAAQAAVAPA  162 (331)
T ss_dssp             HHHHHHHHHHHCT------TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHhCC------CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhCcCHH
Confidence            3444433 44576      67788889999998888  499999999999999999    67999999999999998 69


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660          97 SCLTDCQIALKLKPDYPKVKLRAAQCLFHL--------------KKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus        97 ~Al~d~~~Al~l~P~~~ka~~r~a~a~~~l--------------g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      +++..+.++|+.+|.|..||..++.++..+              +.++++++++.+++.++|+|..+...+.-+.
T Consensus       163 eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll  237 (331)
T 3dss_A          163 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL  237 (331)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999888              5699999999999999999999987554443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.82  E-value=8.6e-09  Score=78.41  Aligned_cols=81  Identities=10%  Similarity=-0.017  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD--YPKVK  116 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~--~~ka~  116 (337)
                      ..+..+...|..+++.|+|++|+.+|+++++.+|++    ..+|.++|.|+..+|++++|+..+++|+++.|.  +..+.
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~   80 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDY----VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL   80 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence            456788999999999999999999999999999984    479999999999999999999999999999764  33433


Q ss_pred             HHHHHHH
Q psy5660         117 LRAAQCL  123 (337)
Q Consensus       117 ~r~a~a~  123 (337)
                      ..+...+
T Consensus        81 ~~l~~~l   87 (100)
T 3ma5_A           81 SELQDAK   87 (100)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3444433

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.82  E-value=6.6e-08  Score=90.71  Aligned_cols=126  Identities=10%  Similarity=-0.059  Sum_probs=108.5

Q ss_pred             HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc-CHHHHHHHH
Q psy5660          24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK-NYRSCLTDC  102 (337)
Q Consensus        24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg-~~~~Al~d~  102 (337)
                      .+-.|.|.|      +-...+-.......+.+..++|+..++++|.++|.    +..+|++|+.+...+| .+++++..+
T Consensus        43 ~~~~i~y~~------~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~----~ytaWn~R~~iL~~l~~~l~eEL~~~  112 (349)
T 3q7a_A           43 PVVPIMYSE------EYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPA----HYTVWQYRFSLLTSLNKSLEDELRLM  112 (349)
T ss_dssp             CSSCBCCCH------HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CeeeeeeCH------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCch----hHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            445667764      55555555555555566678999999999999999    6799999999999999 599999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         103 QIALKLKPDYPKVKLRAAQCLFHL-K-KFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       103 ~~Al~l~P~~~ka~~r~a~a~~~l-g-~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      .++|..+|++..+|..++.++..+ + ++++++.++.++++++|.|..+...+..+...
T Consensus       113 ~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~  171 (349)
T 3q7a_A          113 NEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH  171 (349)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999998 8 99999999999999999999998887776654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.80  E-value=1.4e-07  Score=83.90  Aligned_cols=108  Identities=12%  Similarity=0.099  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHH----hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCC
Q psy5660          41 ATTYKDEGNFNFK----CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF----LKNYRSCLTDCQIALKLKPDY  112 (337)
Q Consensus        41 A~~~k~~Gn~~~k----~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~----lg~~~~Al~d~~~Al~l~P~~  112 (337)
                      +..+...|..+..    .+++++|+.+|+++++..      ...++.++|.++..    .+++.+|+..+++|++.+  +
T Consensus        38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~  109 (273)
T 1ouv_A           38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y  109 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C
T ss_pred             HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C
Confidence            4677889999999    999999999999999875      34788899999999    999999999999999874  7


Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         113 PKVKLRAAQCLFH----LKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       113 ~ka~~r~a~a~~~----lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      ..+++.+|.++..    .+++++|+.+|+++++.+  +..+...++.+..
T Consensus       110 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~  157 (273)
T 1ouv_A          110 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYD  157 (273)
T ss_dssp             HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence            8999999999999    999999999999999875  5556656655543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.78  E-value=1.1e-07  Score=73.66  Aligned_cols=82  Identities=15%  Similarity=0.241  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------HHHH
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD-------STVI  150 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~-------~~~~  150 (337)
                      .+..+.++|.++...|++.+|+..+.+++.++|.+..+++.+|.++..+|++++|+.++++++.++|.+       ..+.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999999999999999998876       6666


Q ss_pred             HHHHHHHHH
Q psy5660         151 DLRTSCINK  159 (337)
Q Consensus       151 ~~l~~~~~~  159 (337)
                      ..++.+...
T Consensus        83 ~~la~~~~~   91 (131)
T 1elr_A           83 ARIGNSYFK   91 (131)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.78  E-value=7.2e-08  Score=83.50  Aligned_cols=111  Identities=8%  Similarity=-0.009  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc----CHHHHHHHHHHHHhhCCCCHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK----NYRSCLTDCQIALKLKPDYPKV  115 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg----~~~~Al~d~~~Al~l~P~~~ka  115 (337)
                      .+..+...|..++..+++++|+.+|++|++..      .+.+++++|.++.. +    ++.+|+..+++|+  ++.++.+
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~~g~~~a   87 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG------DGDALALLAQLKIR-NPQQADYPQARQLAEKAV--EAGSKSG   87 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH--HTTCHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--HCCCHHH
Confidence            46778889999999999999999999998763      34778888888887 6    8888888888885  4568888


Q ss_pred             HHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH
Q psy5660         116 KLRAAQCLFH----LKKFEDCTHLCDELLKENPT--DSTVIDLRTSCINK  159 (337)
Q Consensus       116 ~~r~a~a~~~----lg~~~eA~~~~~~al~l~P~--~~~~~~~l~~~~~~  159 (337)
                      ++.+|.++..    .+++++|+.+|+++++..|.  +..+...++.+...
T Consensus        88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A           88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            8888888887    78888888888888888763  46677777766544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.76  E-value=7e-08  Score=74.23  Aligned_cols=80  Identities=10%  Similarity=0.090  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC---chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD---NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL  117 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~---~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~  117 (337)
                      +..+.+.|+.+++.|+|..|+..|.+|+...+.+   ......++.++|.|+.++|+++.|+..+++|++++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4567788999999999999999999998865322   1226677788888888888888888888888888888877766


Q ss_pred             HHH
Q psy5660         118 RAA  120 (337)
Q Consensus       118 r~a  120 (337)
                      +++
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.74  E-value=9.3e-08  Score=92.47  Aligned_cols=114  Identities=5%  Similarity=-0.012  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccc-----cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCC
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIK-----CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL-----KPD  111 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~-----p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l-----~P~  111 (337)
                      ....+.+...-..|+|++|+..|.++++..     |+.+ ..+..+.|+|.+|..+|+|++|+..+++||.+     .|+
T Consensus       299 ~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp-~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~  377 (433)
T 3qww_A          299 RNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNV-YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY  377 (433)
T ss_dssp             HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhch-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence            344455555556789999999999999853     3333 37788999999999999999999999999976     455


Q ss_pred             CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHH
Q psy5660         112 YP---KVKLRAAQCLFHLKKFEDCTHLCDELLKE-----NPTDSTVIDLRTSC  156 (337)
Q Consensus       112 ~~---ka~~r~a~a~~~lg~~~eA~~~~~~al~l-----~P~~~~~~~~l~~~  156 (337)
                      ++   ..+.++|.+|..+|++++|+..|++++++     .|+++....+...+
T Consensus       378 Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l  430 (433)
T 3qww_A          378 SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI  430 (433)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            54   77899999999999999999999999987     58888777655443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.73  E-value=7e-08  Score=83.57  Aligned_cols=112  Identities=6%  Similarity=-0.127  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHhC----cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCC-
Q psy5660          40 LATTYKDEGNFNFKCN----KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF----LKNYRSCLTDCQIALKLKP-  110 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g----~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~----lg~~~~Al~d~~~Al~l~P-  110 (337)
                      .+.++...|..+.. +    ++++|+.+|++|++..      .+.+++|+|.++..    .+++.+|+..+++|++.+| 
T Consensus        49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  121 (212)
T 3rjv_A           49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES  121 (212)
T ss_dssp             CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS
T ss_pred             CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC
Confidence            35678889999887 6    8999999999997653      45889999999998    8999999999999999998 


Q ss_pred             -CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         111 -DYPKVKLRAAQCLFH----LKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       111 -~~~ka~~r~a~a~~~----lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                       .++.+++.+|.++..    .+++++|+.+|++++++ |++..+...++.+...
T Consensus       122 ~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A          122 DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence             469999999999999    88999999999999998 6777788888777654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.73  E-value=1.1e-07  Score=72.01  Aligned_cols=79  Identities=18%  Similarity=0.155  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHccC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          78 NAQLYNNRAASNFFLKN---YRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT  154 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~---~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  154 (337)
                      ++.++..+|.+++..++   ..+|...+++||+++|+++++++.+|..++..|+|++|+..++++++.+|.++....+..
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i~~   84 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTIIE   84 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence            56888999999987666   799999999999999999999999999999999999999999999999998544444333


Q ss_pred             HH
Q psy5660         155 SC  156 (337)
Q Consensus       155 ~~  156 (337)
                      .+
T Consensus        85 ~I   86 (93)
T 3bee_A           85 SI   86 (93)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.71  E-value=4.9e-07  Score=84.05  Aligned_cols=118  Identities=8%  Similarity=-0.030  Sum_probs=98.6

Q ss_pred             cccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc--hHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660          28 LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN--DVNAQLYNNRAASNFFLKNYRSCLTDCQIA  105 (337)
Q Consensus        28 L~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~--~~~~~~~~nra~~~~~lg~~~~Al~d~~~A  105 (337)
                      +...| ...+...+..+...|..++..|++++|+..|.+++...+...  .....++.++|.++...|++++|+..++++
T Consensus        41 l~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a  119 (373)
T 1hz4_A           41 LEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA  119 (373)
T ss_dssp             HHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            44444 344556777889999999999999999999999999876432  334567889999999999999999999999


Q ss_pred             HhhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660         106 LKLK--------PDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD  146 (337)
Q Consensus       106 l~l~--------P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~  146 (337)
                      +.+.        |....++..+|.++...|++++|..++++++.+.+..
T Consensus       120 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  168 (373)
T 1hz4_A          120 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  168 (373)
T ss_dssp             HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence            9875        3345778889999999999999999999999998753

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.70  E-value=1.9e-07  Score=91.72  Aligned_cols=108  Identities=11%  Similarity=0.062  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHH-------hCcHH-------HHHHHHHHHHc-cccCCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660          39 ELATTYKDEGNFNFK-------CNKYR-------NAIINYTEGLK-IKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ  103 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k-------~g~y~-------~Ai~~Y~~ai~-~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~  103 (337)
                      ..+..+...|..+.+       .|+++       +|+..|.+|++ ..|+    ...+|.++|..+.++|++++|...++
T Consensus       270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~----~~~l~~~~~~~~~~~g~~~~A~~~~~  345 (530)
T 2ooe_A          270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK----NMLLYFAYADYEESRMKYEKVHSIYN  345 (530)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS----CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            346778888888876       68877       89999999997 7887    56899999999999999999999999


Q ss_pred             HHHhhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660         104 IALKLKPDYP-KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVI  150 (337)
Q Consensus       104 ~Al~l~P~~~-ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~  150 (337)
                      +|++++|.+. .+|...|.++...|++++|...|+++++..|.+....
T Consensus       346 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~  393 (530)
T 2ooe_A          346 RLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY  393 (530)
T ss_dssp             HHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHH
T ss_pred             HHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHH
Confidence            9999999985 6999999999999999999999999999888765543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.69  E-value=4.8e-07  Score=87.39  Aligned_cols=118  Identities=8%  Similarity=-0.058  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc----CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CC
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC----ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL-----KP  110 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p----~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l-----~P  110 (337)
                      .+....+.-..+.++|+|++|+..|.++++..-    .+....+..+.|+|.+|..+|+|++|+..++++|.+     .|
T Consensus       286 ~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~  365 (429)
T 3qwp_A          286 EVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG  365 (429)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence            345555666677889999999999999997631    222347889999999999999999999999999976     45


Q ss_pred             CCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHH
Q psy5660         111 DYP---KVKLRAAQCLFHLKKFEDCTHLCDELLKE-----NPTDSTVIDLRTSCI  157 (337)
Q Consensus       111 ~~~---ka~~r~a~a~~~lg~~~eA~~~~~~al~l-----~P~~~~~~~~l~~~~  157 (337)
                      .++   ..++++|.+|..+|++++|+..|++++++     .|+++.....+..+.
T Consensus       366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~  420 (429)
T 3qwp_A          366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE  420 (429)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            554   67899999999999999999999999986     688887776654443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.68  E-value=2.7e-07  Score=90.66  Aligned_cols=117  Identities=14%  Similarity=-0.001  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      +.+..+...|+.+.+.|++++|...|.++++..|.++   ..+|.+.|.+..+.|++++|+..+++|++..|.+...+..
T Consensus       319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~  395 (530)
T 2ooe_A          319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP---TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT  395 (530)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence            4577888999999999999999999999999988742   2589999999999999999999999999999988888776


Q ss_pred             HHHH-HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         119 AAQC-LFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       119 ~a~a-~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      .|.. +...|++++|...|+++++.+|++..+...+..+..
T Consensus       396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~  436 (530)
T 2ooe_A          396 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS  436 (530)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            6655 346899999999999999999999888776666543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.60  E-value=2.7e-07  Score=83.94  Aligned_cols=146  Identities=8%  Similarity=0.006  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY--PKVKLR  118 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~--~ka~~r  118 (337)
                      .......+..+...|+|++|.+.|...+...|.    .. .++++|.++++.|+|.+|+..++.++...+..  ..+++.
T Consensus       102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~----~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~  176 (282)
T 4f3v_A          102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSE----HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA  176 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH----HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc----hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence            344556789999999999999999999988876    44 88899999999999999999999887764222  358999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKEN--PT-DSTVIDLRTSCINKHKE---ILRNERKQAQQVKKEEKEKERVLQIIRERK  192 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~--P~-~~~~~~~l~~~~~~~~~---~~~~~~k~~~~~~~~~~~~~~l~~al~~rg  192 (337)
                      +|.++..+|++++|+.+|++++...  |. ...+...++.+.....+   +....++...    .... .....+|....
T Consensus       177 LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a----~~P~-~~~~~aL~~~~  251 (282)
T 4f3v_A          177 HGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT----THPE-PKVAAALKDPS  251 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HSCC-HHHHHHHHCTT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCc-HHHHHHHhCCC
Confidence            9999999999999999999998654  54 44566666666655222   2222222211    1122 55777777665


Q ss_pred             cccc
Q psy5660         193 IKLA  196 (337)
Q Consensus       193 i~~~  196 (337)
                      ..+.
T Consensus       252 ~~~~  255 (282)
T 4f3v_A          252 YRLK  255 (282)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            5443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.59  E-value=2.9e-07  Score=85.64  Aligned_cols=110  Identities=7%  Similarity=0.022  Sum_probs=94.6

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC--c--hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q psy5660          34 ENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD--N--DVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK  109 (337)
Q Consensus        34 ~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~--~--~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~  109 (337)
                      .+.+...+..+...|..++..|+|.+|+.+|.+++...+..  .  .....++.++|.++..+|++++|+..+++++.+.
T Consensus        86 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  165 (373)
T 1hz4_A           86 HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL  165 (373)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            34555667778899999999999999999999999976421  1  2366788999999999999999999999999998


Q ss_pred             CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660         110 PD-----YPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN  143 (337)
Q Consensus       110 P~-----~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~  143 (337)
                      +.     ...++..+|.++...|++++|..++++++.+.
T Consensus       166 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~  204 (373)
T 1hz4_A          166 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL  204 (373)
T ss_dssp             TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            75     35688899999999999999999999999874

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.57  E-value=8.1e-07  Score=68.16  Aligned_cols=80  Identities=13%  Similarity=0.028  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLK-------PDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVI  150 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~-------P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~  150 (337)
                      .+.-++.+|..++..|+|..|+..+++|++..       +.....+..+|.|+..+|+++.|+..++++++++|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            34556789999999999999999999999973       34578899999999999999999999999999999998887


Q ss_pred             HHHHHHH
Q psy5660         151 DLRTSCI  157 (337)
Q Consensus       151 ~~l~~~~  157 (337)
                      ..+....
T Consensus        84 ~n~~~~~   90 (104)
T 2v5f_A           84 GNLKYFE   90 (104)
T ss_dssp             HHHHHHH
T ss_pred             hhHHHHH
Confidence            6665443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.46  E-value=1.7e-06  Score=69.72  Aligned_cols=95  Identities=6%  Similarity=-0.088  Sum_probs=82.4

Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660          47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF----LKNYRSCLTDCQIALKLKPDYPKVKLRAAQC  122 (337)
Q Consensus        47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~----lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a  122 (337)
                      .|..+...+.+++|+.+|++|.+..      .+.+++|+|.+|..    .+++.+|+..+++|.+.  .++.+++++|.+
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~  102 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELN------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYK  102 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCC------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence            8888888888889999999999873      35889999999998    89999999999999887  689999999999


Q ss_pred             HHh----cCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660         123 LFH----LKKFEDCTHLCDELLKENPTDSTVID  151 (337)
Q Consensus       123 ~~~----lg~~~eA~~~~~~al~l~P~~~~~~~  151 (337)
                      +..    .+++++|+.+|+++.+.  ++..+..
T Consensus       103 y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~  133 (138)
T 1klx_A          103 QYAGKGVVKNEKQAVKTFEKACRL--GSEDACG  133 (138)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHH
Confidence            999    89999999999999987  4444443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.44  E-value=3.4e-06  Score=81.88  Aligned_cols=107  Identities=7%  Similarity=0.019  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHhC---cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHH
Q psy5660          42 TTYKDEGNFNFKCN---KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF----LKNYRSCLTDCQIALKLKPDYPK  114 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g---~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~----lg~~~~Al~d~~~Al~l~P~~~k  114 (337)
                      ..+...|..++..|   ++++|+.+|+++++..      .+.++.++|.++..    .+++.+|+..+++|++.+  +..
T Consensus       329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~  400 (490)
T 2xm6_A          329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSA  400 (490)
T ss_dssp             HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred             HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHH
Confidence            34555666666544   6677777777777652      34677777777777    677777777777777653  577


Q ss_pred             HHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHH
Q psy5660         115 VKLRAAQCLFH----LKKFEDCTHLCDELLKENPT---DSTVIDLRTSC  156 (337)
Q Consensus       115 a~~r~a~a~~~----lg~~~eA~~~~~~al~l~P~---~~~~~~~l~~~  156 (337)
                      +++++|.++..    .+++++|+.+|+++++.+|+   +..+...++.+
T Consensus       401 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~  449 (490)
T 2xm6_A          401 AQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL  449 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence            77777777777    77778888888887777743   55555555444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.38  E-value=3.6e-06  Score=66.90  Aligned_cols=101  Identities=10%  Similarity=0.022  Sum_probs=84.1

Q ss_pred             CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHhcCCH
Q psy5660          55 NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRS---CLTDCQIALKLK-P-DYPKVKLRAAQCLFHLKKF  129 (337)
Q Consensus        55 g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~---Al~d~~~Al~l~-P-~~~ka~~r~a~a~~~lg~~  129 (337)
                      .....+...|.+.+..++.    .....+|.|.|+.+-++-..   +|..+...++-+ | ..-.++|.+|.+++++|+|
T Consensus        15 ~~l~~~~~~y~~e~~~~~~----s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y   90 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSV----SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY   90 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhccCCC----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence            3455667778887775553    55888999999988776555   999999988877 5 5678999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         130 EDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       130 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ..|.++++.+|+++|+|..+..+...+..+
T Consensus        91 ~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~  120 (126)
T 1nzn_A           91 EKALKYVRGLLQTEPQNNQAKELERLIDKA  120 (126)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999988877654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.36  E-value=5.3e-06  Score=78.00  Aligned_cols=115  Identities=8%  Similarity=-0.106  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHhCc---HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCH-------HHHHHHHH---HHH
Q psy5660          40 LATTYKDEGNFNFKCNK---YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNY-------RSCLTDCQ---IAL  106 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~---y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~-------~~Al~d~~---~Al  106 (337)
                      .|-.+.-+|..++..+.   +.+|+.+|++|++++|+    .+.+|..++.||..+..+       ..++....   .++
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~----~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~  270 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE----FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL  270 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence            35566677888776654   68999999999999998    556666666655422111       01111111   122


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         107 KLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       107 ~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      .++|..+.++..+|.++...|++++|+..+++++.++|+ .....+++.+...
T Consensus       271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~  322 (372)
T 3ly7_A          271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEM  322 (372)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence            345555555555555555556666666666666666543 3333444444433

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.35  E-value=1.7e-06  Score=84.94  Aligned_cols=105  Identities=10%  Similarity=0.001  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccc----cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIK----CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL-----  108 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~----p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l-----  108 (337)
                      ...+..+.+.|..|..+|+|++|+.+|.++++..    +.+-...+..++|+|.+|..+|+|++|+..+++|+.+     
T Consensus       348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~l  427 (490)
T 3n71_A          348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTH  427 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            3688899999999999999999999999999862    2223347899999999999999999999999999985     


Q ss_pred             CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         109 KPDYP---KVKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       109 ~P~~~---ka~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                      .|+++   +..-.++.++..+++|++|...|+++.+-
T Consensus       428 G~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          428 GPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57765   55567899999999999999999888653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.28  E-value=5.1e-05  Score=73.51  Aligned_cols=107  Identities=13%  Similarity=-0.025  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHh-----CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCH
Q psy5660          42 TTYKDEGNFNFKC-----NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK---NYRSCLTDCQIALKLKPDYP  113 (337)
Q Consensus        42 ~~~k~~Gn~~~k~-----g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg---~~~~Al~d~~~Al~l~P~~~  113 (337)
                      ..+...|..+...     +++++|+..|.++++..+      ..++.++|.++...|   ++++|+..+++|++.  .++
T Consensus       292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~------~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~  363 (490)
T 2xm6_A          292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD------ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEK  363 (490)
T ss_dssp             HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCH
T ss_pred             HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCH
Confidence            4556677777776     788888888888877643      367888888888765   788899999998877  578


Q ss_pred             HHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         114 KVKLRAAQCLFH----LKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       114 ka~~r~a~a~~~----lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      .+++.+|.++..    .+++++|+.+|+++++.  ++..+...++.+..
T Consensus       364 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~  410 (490)
T 2xm6_A          364 AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYY  410 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence            899999999988    88999999999998875  45667666666654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.24  E-value=9.1e-06  Score=78.56  Aligned_cols=107  Identities=14%  Similarity=0.027  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHhC---cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc----cCHHHHHHHHHHHHhhCCCCHHH
Q psy5660          43 TYKDEGNFNFKCN---KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL----KNYRSCLTDCQIALKLKPDYPKV  115 (337)
Q Consensus        43 ~~k~~Gn~~~k~g---~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l----g~~~~Al~d~~~Al~l~P~~~ka  115 (337)
                      .+...|..+.+.|   ++++|+..|+++++..+.    .+..++|+|.++...    +++.+|+..+++|.   |.++.+
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~----~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a  250 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV----TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPAS  250 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHH
Confidence            6678888888888   889999999999988877    456667888888665    68888888888887   788888


Q ss_pred             HHHHHHH-H--HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         116 KLRAAQC-L--FHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       116 ~~r~a~a-~--~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      ++++|.+ +  ...+++++|+.+|+++.+.  ++..+...++.+..
T Consensus       251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY  294 (452)
T ss_dssp             HHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            8888887 4  4678888888888888754  46777777766654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.19  E-value=7.9e-06  Score=77.12  Aligned_cols=105  Identities=13%  Similarity=0.074  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC------------------------------------------ch
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD------------------------------------------ND   76 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~------------------------------------------~~   76 (337)
                      ....++.+.|+.+++.|+|++|+.+|.+++...+..                                          ..
T Consensus        53 ~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  132 (434)
T 4b4t_Q           53 EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF  132 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH
Confidence            455678899999999999999999999888753321                                          11


Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660          77 VNAQLYNNRAASNFFLKNYRSCLTDCQIALKL------KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN  143 (337)
Q Consensus        77 ~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l------~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~  143 (337)
                      ..+.++.++|.++..+|+|.+|+..+++++..      .+....++...|.++..+|++.+|...+++++.+.
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA  205 (434)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            23556677777777777777777777777665      22335677777777777777777777777777663

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.15  E-value=1.3e-05  Score=65.94  Aligned_cols=79  Identities=18%  Similarity=0.097  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHccc-cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q psy5660          39 ELATTYKDEGNFNFKCN---KYRNAIINYTEGLKIK-CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK  114 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g---~y~~Ai~~Y~~ai~~~-p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k  114 (337)
                      ...+..++.|..+.+.+   +.++|+..++..++.+ |.   .+..+++|+|.+++++|+|.+|+..|+++|+++|+|..
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~---~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~Q  106 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE---EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ  106 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc---chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence            35678889999999988   7889999999999987 52   26789999999999999999999999999999999998


Q ss_pred             HHHHHH
Q psy5660         115 VKLRAA  120 (337)
Q Consensus       115 a~~r~a  120 (337)
                      |..-.-
T Consensus       107 A~~Lk~  112 (152)
T 1pc2_A          107 AKELER  112 (152)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.11  E-value=2.2e-05  Score=72.21  Aligned_cols=108  Identities=12%  Similarity=0.003  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHhC--cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---------
Q psy5660          40 LATTYKDEGNFNFKCN--KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL---------  108 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g--~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l---------  108 (337)
                      ........|.+.+..|  ++.+|...|+++.+..|+..  ...++.|   |++++|+|++|..+++.++++         
T Consensus       175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~--~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~  249 (310)
T 3mv2_B          175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK--TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKEN  249 (310)
T ss_dssp             HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH--HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHH
T ss_pred             HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc--cHHHHHH---HHHHcCCHHHHHHHHHHHHHhccccccccc
Confidence            3344444565566666  99999999999888776411  2345555   899999999999999988887         


Q ss_pred             -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660         109 -KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT  154 (337)
Q Consensus       109 -~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  154 (337)
                       +|+++.++.+++.+...+|+  +|.+++.++.+.+|+++-+.....
T Consensus       250 ~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~  294 (310)
T 3mv2_B          250 AVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQE  294 (310)
T ss_dssp             HHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHH
Confidence             59999999999999999998  999999999999999998877543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.09  E-value=7.4e-06  Score=78.92  Aligned_cols=99  Identities=11%  Similarity=0.124  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH----
Q psy5660          43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR----  118 (337)
Q Consensus        43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r----  118 (337)
                      ++...|+.++..|+|++|+.+|+++            ..|.++|.|+.++|+|++|++.+++|     .++++|..    
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a------------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~a  186 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFA  186 (449)
T ss_dssp             -------------CTTTHHHHHHHT------------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh------------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHH
Confidence            8899999999999999999999976            34888999999999999999999999     24433333    


Q ss_pred             --------------------------HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         119 --------------------------AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       119 --------------------------~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                                                +..+|...|++++|+..++.++.+++.+..+...++.+..
T Consensus       187 Cv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~  252 (449)
T 1b89_A          187 CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS  252 (449)
T ss_dssp             HHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence                                      3356777788888888888888888888777776655543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.08  E-value=1.9e-05  Score=76.35  Aligned_cols=105  Identities=3%  Similarity=-0.119  Sum_probs=60.2

Q ss_pred             HHHHHHHHHH---HHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHhhCCCCH
Q psy5660          42 TTYKDEGNFN---FKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK-----NYRSCLTDCQIALKLKPDYP  113 (337)
Q Consensus        42 ~~~k~~Gn~~---~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg-----~~~~Al~d~~~Al~l~P~~~  113 (337)
                      ..+.+.|..+   ...+++++|+.+|++|++..      .+.+++|+|.++. .|     ++.+|+..+++|.   |.++
T Consensus       249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~  318 (452)
T 3e4b_A          249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREV  318 (452)
T ss_dssp             HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCH
T ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCH
Confidence            3444555552   24456666666666665433      2355666666665 33     6666666666666   6666


Q ss_pred             HHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         114 KVKLRAAQCLFH----LKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       114 ka~~r~a~a~~~----lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      .+++++|.+|..    ..++++|+.+|+++.+  +++..+...++.+..
T Consensus       319 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~  365 (452)
T 3e4b_A          319 AADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFS  365 (452)
T ss_dssp             HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHH
Confidence            666666666655    2366666666666664  344555555555544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.07  E-value=2.5e-05  Score=84.16  Aligned_cols=106  Identities=11%  Similarity=0.096  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-----------
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP-----------  110 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P-----------  110 (337)
                      ..+...|+.++..|+|++|+.+|++|            ..|..+|.|+.++|+|++|++.+++|...++           
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDG 1263 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhh
Confidence            35667999999999999999999985            4688999999999999999999999954433           


Q ss_pred             --------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         111 --------------DYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       111 --------------~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                                    .++..+..++..|...|.|++|+..|+.+|.+++.+..+...+..+..+
T Consensus      1264 ~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A         1264 KEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred             hHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence                          1334455777788899999999999999999999988777766666544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.06  E-value=3.7e-05  Score=61.73  Aligned_cols=93  Identities=9%  Similarity=-0.085  Sum_probs=81.4

Q ss_pred             CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHH
Q psy5660          55 NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFH----LKKFE  130 (337)
Q Consensus        55 g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~----lg~~~  130 (337)
                      +++++|+.+|+++.+....      .+.  +|.++...+.+.+|+..+++|.+.  .++.+++++|.++..    .++++
T Consensus         9 ~d~~~A~~~~~~aa~~g~~------~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~   78 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEM------FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLR   78 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCT------THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             cCHHHHHHHHHHHHcCCCH------hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHH
Confidence            5789999999999998754      222  999999999999999999999987  689999999999999    89999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         131 DCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       131 eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +|+.+|+++.+.  ++..+...++.+...
T Consensus        79 ~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           79 KAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            999999999987  678888888877654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.05  E-value=2.8e-05  Score=64.52  Aligned_cols=119  Identities=20%  Similarity=0.168  Sum_probs=87.6

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC-----chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD-----NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK--  109 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~-----~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~--  109 (337)
                      |...-.++.++...++..|.|+.|+-.+..++.+..++     +.....++...|.+++..|+|++|...|++||++.  
T Consensus        16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~   95 (167)
T 3ffl_A           16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA   95 (167)
T ss_dssp             -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred             CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            34455678899999999999999999999988775332     34577889999999999999999999999998752  


Q ss_pred             -CCC----------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         110 -PDY----------------------PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       110 -P~~----------------------~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                       +++                      ....|+.|.|+.+++++++|+..++..-. --..+.+.-.++++
T Consensus        96 l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakL  164 (167)
T 3ffl_A           96 LSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANL  164 (167)
T ss_dssp             C--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHH
T ss_pred             HhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHH
Confidence             111                      25779999999999999999998663211 11334454444443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.03  E-value=1.7e-05  Score=72.00  Aligned_cols=88  Identities=11%  Similarity=0.068  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHh-cCCH
Q psy5660          57 YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL-----KNYRSCLTDCQIALKLKPDY-PKVKLRAAQCLFH-LKKF  129 (337)
Q Consensus        57 y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l-----g~~~~Al~d~~~Al~l~P~~-~ka~~r~a~a~~~-lg~~  129 (337)
                      ...|.....+||+++|+..  ...+|.-+|..|.++     |+.++|...+++||+++|+. ..+++..|..+.. .|++
T Consensus       179 l~~A~a~lerAleLDP~~~--~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQ--EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHH--HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHhCCCcc--cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            6889999999999999732  567999999999996     99999999999999999975 9999999999988 5999


Q ss_pred             HHHHHHHHHHHhhCCCC
Q psy5660         130 EDCTHLCDELLKENPTD  146 (337)
Q Consensus       130 ~eA~~~~~~al~l~P~~  146 (337)
                      ++|.+.+++++..+|..
T Consensus       257 ~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          257 AGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHHcCCCCC
Confidence            99999999999987763

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.97  E-value=2.1e-05  Score=59.22  Aligned_cols=70  Identities=11%  Similarity=0.103  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q psy5660          39 ELATTYKDEGNFNFKCNK---YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY  112 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~---y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~  112 (337)
                      +.+..+...|..++-.++   ..+|...+.+|++.+|+    +..++..+|..+++.|+|++|+..++++++.+|..
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~----~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY----NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            456778889999976655   79999999999999999    56888999999999999999999999999999984

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.97  E-value=4.2e-05  Score=82.45  Aligned_cols=95  Identities=12%  Similarity=0.085  Sum_probs=78.4

Q ss_pred             HHHHHHHHhCcHHHHHHHHHHHHccccC------------------CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy5660          46 DEGNFNFKCNKYRNAIINYTEGLKIKCA------------------DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK  107 (337)
Q Consensus        46 ~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~------------------~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~  107 (337)
                      +-|..+...|.|++|...|.++-...-.                  ..-....+|+++|.++...|++.+|+..|.+|  
T Consensus      1054 eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A         1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence            3488888889999998888886422100                  00014688999999999999999999999887  


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660         108 LKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT  145 (337)
Q Consensus       108 l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~  145 (337)
                         ++..+|++.|.++..+|+|++|+++|..+.+.+++
T Consensus      1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence               88999999999999999999999999999987754

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.95  E-value=0.0001  Score=58.85  Aligned_cols=83  Identities=13%  Similarity=0.019  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          78 NAQLYNNRAASNFFLK---NYRSCLTDCQIALKLKPD-YPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLR  153 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg---~~~~Al~d~~~Al~l~P~-~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l  153 (337)
                      ....-+|.|.|..+-.   +..++|..+...++.+|. .-.++|.+|.+++++|+|.+|.++++.+|+++|+|..+..+.
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            4577788888888765   456799999999998884 468999999999999999999999999999999999999998


Q ss_pred             HHHHHHH
Q psy5660         154 TSCINKH  160 (337)
Q Consensus       154 ~~~~~~~  160 (337)
                      ..+..+.
T Consensus       119 ~~Ie~ki  125 (134)
T 3o48_A          119 SMVEDKI  125 (134)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.90  E-value=0.0006  Score=62.65  Aligned_cols=109  Identities=14%  Similarity=0.017  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC----CHHHHHHH
Q psy5660          44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD----YPKVKLRA  119 (337)
Q Consensus        44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~----~~ka~~r~  119 (337)
                      +.-.|..+...|++++|++.+.++|..+|..  ....++.-++.+++++|+.+.|...+++..+.+|+    +-.....+
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~--~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~L  180 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDNDEAE--GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNL  180 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSSCST--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCc--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHH
Confidence            4589999999999999999999999988721  16788888999999999999999999999999993    23334444


Q ss_pred             --HHHHHhcC--CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660         120 --AQCLFHLK--KFEDCTHLCDELLKENPTDSTVIDLRT  154 (337)
Q Consensus       120 --a~a~~~lg--~~~eA~~~~~~al~l~P~~~~~~~~l~  154 (337)
                        |.+.+..|  ++.+|...|+++....|+......++.
T Consensus       181 aea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln  219 (310)
T 3mv2_B          181 AESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN  219 (310)
T ss_dssp             HHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH
Confidence              54466667  999999999999888776333333333

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.87  E-value=0.00023  Score=57.46  Aligned_cols=81  Identities=12%  Similarity=0.016  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHccC---HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          78 NAQLYNNRAASNFFLKN---YRSCLTDCQIALKLKPD-YPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLR  153 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~---~~~Al~d~~~Al~l~P~-~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l  153 (337)
                      .....+|.|.|..+-.+   .+++|..++..++-.|. .-.++|.+|.+++++|+|.+|.++++.+|+++|+|.++..+.
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            45778888888887654   56799999999998884 568999999999999999999999999999999999998877


Q ss_pred             HHHHH
Q psy5660         154 TSCIN  158 (337)
Q Consensus       154 ~~~~~  158 (337)
                      ..+..
T Consensus       118 ~~Ie~  122 (144)
T 1y8m_A          118 SMVED  122 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.86  E-value=9.4e-05  Score=69.61  Aligned_cols=104  Identities=9%  Similarity=0.008  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc--CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC---CC-
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC--ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP---DY-  112 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p--~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P---~~-  112 (337)
                      ..+..+...|+.++..|+|.+|+..+.+++....  .+......++.+.+.++..+|+|.+|...+++|+.+.+   .. 
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  212 (434)
T 4b4t_Q          133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPT  212 (434)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCch
Confidence            3577788999999999999999999999987633  34455788999999999999999999999999998743   22 


Q ss_pred             ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         113 ---PKVKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       113 ---~ka~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                         ...+..+|..+...|+|.+|..+|..+++.
T Consensus       213 ~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          213 QTVAELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence               245667789999999999999999999875

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.65  E-value=0.0004  Score=66.84  Aligned_cols=90  Identities=7%  Similarity=0.026  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccc----cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIK----CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL----  108 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~----p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l----  108 (337)
                      -...+..+.+.|..|..+|+|++|+.+|.+++...    +.+-...+..++|+|.+|..+|+|++|+..+++|+++    
T Consensus       325 h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~  404 (429)
T 3qwp_A          325 NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT  404 (429)
T ss_dssp             SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence            34788999999999999999999999999999762    3333448899999999999999999999999999985    


Q ss_pred             -CCCCH---HHHHHHHHHHHhc
Q psy5660         109 -KPDYP---KVKLRAAQCLFHL  126 (337)
Q Consensus       109 -~P~~~---ka~~r~a~a~~~l  126 (337)
                       .|+++   .++..++.|...+
T Consensus       405 lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          405 HGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             TCTTSHHHHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHH
Confidence             57765   3444556655443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.57  E-value=0.00021  Score=68.95  Aligned_cols=77  Identities=10%  Similarity=-0.043  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccc----cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIK----CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL-----  108 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~----p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l-----  108 (337)
                      ...+..+.+.|..|..+|+|++|+.+|.++++..    +.+-...+..++|+|.+|..+|+|++|+..+++|+++     
T Consensus       337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~l  416 (433)
T 3qww_A          337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAH  416 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Confidence            3688999999999999999999999999999762    2223347899999999999999999999999999985     


Q ss_pred             CCCCHH
Q psy5660         109 KPDYPK  114 (337)
Q Consensus       109 ~P~~~k  114 (337)
                      .|+++.
T Consensus       417 G~~Hp~  422 (433)
T 3qww_A          417 GKDHPY  422 (433)
T ss_dssp             CTTCHH
T ss_pred             CCCChH
Confidence            577654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.54  E-value=6.6e-05  Score=72.31  Aligned_cols=92  Identities=12%  Similarity=0.040  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC-----------------------chHHHHHHHHHHHHHHHccCHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD-----------------------NDVNAQLYNNRAASNFFLKNYR   96 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~-----------------------~~~~~~~~~nra~~~~~lg~~~   96 (337)
                      ....+.+.|+.+...|+|++|+.++..+++..++.                       ..-+...|.++|.++...|+|+
T Consensus        60 D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~ye  139 (449)
T 1b89_A           60 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYD  139 (449)
T ss_dssp             -------------------------------------------------CHHHHTTTTTCC----------------CTT
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHH
Confidence            34467777778888888888888888877542110                       0013357888899999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5660          97 SCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDEL  139 (337)
Q Consensus        97 ~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~a  139 (337)
                      +|+..+.++        ..|.++|.|+..+|+|++|+++++++
T Consensus       140 eA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          140 AAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             THHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence            999999877        47889999999999999999999999

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.45  E-value=0.00067  Score=56.22  Aligned_cols=92  Identities=20%  Similarity=0.196  Sum_probs=69.7

Q ss_pred             CCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC---Cc------------------hHHHHHHHHHHHHH
Q psy5660          31 DPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA---DN------------------DVNAQLYNNRAASN   89 (337)
Q Consensus        31 dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~---~~------------------~~~~~~~~nra~~~   89 (337)
                      +|+-.+|...++.+...|+.+|.+|+|..|...|++||...-.   .+                  .-...+.+..|.|+
T Consensus        53 ~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~  132 (167)
T 3ffl_A           53 NPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECY  132 (167)
T ss_dssp             STTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHH
T ss_pred             CcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHH
Confidence            4444589999999999999999999999999999999876321   10                  01226788899999


Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660          90 FFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCL  123 (337)
Q Consensus        90 ~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~  123 (337)
                      .++|++++|+...+.. -..-..++....+|+.|
T Consensus       133 ~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          133 TVLKQDKDAIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             HHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence            9999999999986542 22334667777777654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.31  E-value=0.0017  Score=51.45  Aligned_cols=78  Identities=17%  Similarity=0.104  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHhCcHHH---HHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRN---AIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVK  116 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~---Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~  116 (337)
                      ....-.+.|..+.+.++-.+   +|..++..+...  .+...-.+.+.+|.+++++|+|..|+..|+..|+.+|.|..|.
T Consensus        34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~  111 (126)
T 1nzn_A           34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK  111 (126)
T ss_dssp             CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence            34566778888888776555   999999988865  1223667888899999999999999999999999999998876


Q ss_pred             HHH
Q psy5660         117 LRA  119 (337)
Q Consensus       117 ~r~  119 (337)
                      --.
T Consensus       112 ~Lk  114 (126)
T 1nzn_A          112 ELE  114 (126)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.18  E-value=0.0044  Score=49.34  Aligned_cols=79  Identities=9%  Similarity=-0.054  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660          39 ELATTYKDEGNFNFKCNK---YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV  115 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~---y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka  115 (337)
                      -.+..-.+.+..+.+.++   ...+|..++..+...|..   .-.+++.+|.+|+++|+|..|...|+..|+.+|.|..|
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~---~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR---RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            355777788888888765   467999999988876632   55778889999999999999999999999999999887


Q ss_pred             HHHHH
Q psy5660         116 KLRAA  120 (337)
Q Consensus       116 ~~r~a  120 (337)
                      .--..
T Consensus       115 ~~Lk~  119 (134)
T 3o48_A          115 GALKS  119 (134)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.18  E-value=0.0013  Score=61.63  Aligned_cols=77  Identities=9%  Similarity=-0.022  Sum_probs=67.5

Q ss_pred             HHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660          67 GLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD  146 (337)
Q Consensus        67 ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~  146 (337)
                      ++...|.    .+.+|.-+|.+++..|++++|+..+++|+.++|+ .-+|..+|.++...|++++|++.|.+|+.++|..
T Consensus       269 a~~~~~~----~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          269 TLPELNN----LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             TCGGGTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             hcccCCc----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            4455666    5577887888888889999999999999999974 7788999999999999999999999999999987


Q ss_pred             HH
Q psy5660         147 ST  148 (337)
Q Consensus       147 ~~  148 (337)
                      +.
T Consensus       344 ~t  345 (372)
T 3ly7_A          344 NT  345 (372)
T ss_dssp             HH
T ss_pred             Ch
Confidence            64

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.11  E-value=0.0076  Score=54.60  Aligned_cols=63  Identities=10%  Similarity=-0.043  Sum_probs=55.1

Q ss_pred             CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Q psy5660          94 NYRSCLTDCQIALKLKPD--YPKVKLRAAQCLFHL-----KKFEDCTHLCDELLKENPTD-STVIDLRTSC  156 (337)
Q Consensus        94 ~~~~Al~d~~~Al~l~P~--~~ka~~r~a~a~~~l-----g~~~eA~~~~~~al~l~P~~-~~~~~~l~~~  156 (337)
                      ....|....++|+++||+  +..+|..+|..|..+     |+.+.|.++|+++|+++|+. .......++.
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~  248 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADA  248 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            478899999999999999  566999999999996     99999999999999999975 7666666654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.07  E-value=0.0077  Score=48.53  Aligned_cols=78  Identities=9%  Similarity=-0.059  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660          39 ELATTYKDEGNFNFKCNK---YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV  115 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~---y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka  115 (337)
                      -..+.-++.+..+.+..+   -+.+|..++..+...|..   .-.+.+.+|.+++++|+|..|...|+..|+.+|.|..|
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~---~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA  113 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR---RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  113 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST---HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc---hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence            456777888888888875   467999999999877743   45677779999999999999999999999999999877


Q ss_pred             HHHH
Q psy5660         116 KLRA  119 (337)
Q Consensus       116 ~~r~  119 (337)
                      .-..
T Consensus       114 ~~Lk  117 (144)
T 1y8m_A          114 GALK  117 (144)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.04  E-value=0.016  Score=54.77  Aligned_cols=118  Identities=8%  Similarity=0.064  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC--------c----------hHHHHHHHHHHHHHHHccCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD--------N----------DVNAQLYNNRAASNFFLKNYRSCLT  100 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~--------~----------~~~~~~~~nra~~~~~lg~~~~Al~  100 (337)
                      ...+.+...|......|+...|+..+.+|+.+-..+        .          +....+...++.+++.+|++.+|+.
T Consensus       113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~  192 (388)
T 2ff4_A          113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA  192 (388)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            344566677777788899999999999999873211        0          1233444557788889999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHH
Q psy5660         101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE-------NPTDSTVIDLRTSCI  157 (337)
Q Consensus       101 d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l-------~P~~~~~~~~l~~~~  157 (337)
                      .+.+++..+|-+-.++..+-.++...|+..+|++.|+++-+.       +| .+++..+...+.
T Consensus       193 ~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P-~~~l~~l~~~il  255 (388)
T 2ff4_A          193 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP-GPTLRALNERIL  255 (388)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC-CHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHH
Confidence            999999999999999999999999999999999999987653       44 355555555544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.42  E-value=0.02  Score=58.17  Aligned_cols=98  Identities=9%  Similarity=-0.002  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHhCcHHHHH-HHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----------
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAI-INYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL-----------  108 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai-~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l-----------  108 (337)
                      +..+...+..+...|+...|+ ..|.+|+...|.    ...+|...|....+.|++++|...+++++..           
T Consensus       343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~----s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~  418 (679)
T 4e6h_A          343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN----SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED  418 (679)
T ss_dssp             HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            455667777777788888887 999999998887    4577888888888899999999999988875           


Q ss_pred             CCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         109 KPD-----------YPKVKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       109 ~P~-----------~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                      .|.           ...+|...+......|..+.|...+.+|++.
T Consensus       419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL  463 (679)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            253           3457788888888888899999999999876

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.38  E-value=0.045  Score=55.58  Aligned_cols=116  Identities=9%  Similarity=0.021  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKN-YRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~-~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      .+..+...++...+.|..+.|...|.+|++..|..   ...+|...|..-.+.++ ++.|...++++++..|++...+..
T Consensus       433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~---~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~  509 (679)
T 4e6h_A          433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV---TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINK  509 (679)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS---CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHH
Confidence            44556677777777889999999999999873321   23566666666666654 999999999999999999998888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPT---DSTVIDLRTSCIN  158 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~---~~~~~~~l~~~~~  158 (337)
                      .+......|+.+.|..+|++++...|+   ...+.......+.
T Consensus       510 y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~  552 (679)
T 4e6h_A          510 YLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES  552 (679)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            899888999999999999999999884   3334444444333

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.16  E-value=0.1  Score=42.39  Aligned_cols=92  Identities=12%  Similarity=0.087  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHccccCCc----hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q psy5660          58 RNAIINYTEGLKIKCADN----DVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCT  133 (337)
Q Consensus        58 ~~Ai~~Y~~ai~~~p~~~----~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~  133 (337)
                      +.-++.|++|+..-|...    .....+|.+-|. +..+++.++|.+.|+.|+.+..+..+.|...|+--...|+...|.
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kAR  114 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSK  114 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHH
Confidence            778899999999876532    235666776664 467899999999999999998888899999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHH
Q psy5660         134 HLCDELLKENPTDSTVI  150 (337)
Q Consensus       134 ~~~~~al~l~P~~~~~~  150 (337)
                      +.+.+++.+.|...++.
T Consensus       115 kILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A          115 QLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHHHHHHHTTCBCHHHH
T ss_pred             HHHHHHhccCCCcHHHH
Confidence            99999999998876553

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.08  E-value=0.077  Score=54.32  Aligned_cols=59  Identities=15%  Similarity=0.168  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5660          81 LYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDEL  139 (337)
Q Consensus        81 ~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~a  139 (337)
                      ++.--|.-++..|+|+-|+..+++|+.+-|....+|+++|.||..+|+|+.|+-.+..+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            34444555667899999999999999999999999999999999999999999776655

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.48  E-value=0.42  Score=45.10  Aligned_cols=97  Identities=11%  Similarity=-0.010  Sum_probs=78.1

Q ss_pred             HHHHHHHHhCcHHHHHHHHHHHHcccc--CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC---CCC--HHHHH-
Q psy5660          46 DEGNFNFKCNKYRNAIINYTEGLKIKC--ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK---PDY--PKVKL-  117 (337)
Q Consensus        46 ~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p--~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~---P~~--~ka~~-  117 (337)
                      ..|..++..|+|.+|+..+++......  ++....-.+|......|..+||+.++...+.+|....   +.+  ..+.+ 
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            689999999999999999999887533  3455677888889999999999999999998887653   122  33444 


Q ss_pred             -HHHHHHH-hcCCHHHHHHHHHHHHhh
Q psy5660         118 -RAAQCLF-HLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       118 -r~a~a~~-~lg~~~eA~~~~~~al~l  142 (337)
                       -.|..++ ..++|..|...|-.+++-
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence             4588888 899999999999888743

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=94.10  E-value=1.5  Score=42.30  Aligned_cols=109  Identities=9%  Similarity=-0.034  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHH------------------------------------HHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVN------------------------------------AQLYNN   84 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~------------------------------------~~~~~n   84 (337)
                      +..+...+..+...|+.+.|...|.+|+.. |.+..+.                                    ..+|.+
T Consensus       213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~  291 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN  291 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence            566778888888999999999999999999 8754211                                    122333


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660          85 RAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLK-KFEDCTHLCDELLKENPTDSTVID  151 (337)
Q Consensus        85 ra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg-~~~eA~~~~~~al~l~P~~~~~~~  151 (337)
                      .+....+.++.+.|...+.+| +..+.....|...|..-..++ +.+.|...|+.+++..|+++....
T Consensus       292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~  358 (493)
T 2uy1_A          292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKE  358 (493)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHH
Confidence            333344577889999999999 444445566766676666666 699999999999999998876533

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.02  E-value=0.68  Score=38.48  Aligned_cols=98  Identities=11%  Similarity=0.011  Sum_probs=72.5

Q ss_pred             HHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--h---------------
Q psy5660          46 DEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK--L---------------  108 (337)
Q Consensus        46 ~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~--l---------------  108 (337)
                      -.|-.++-.|.|..|+-...   .++      .++..+--+.|+.++++|..|+...+..|.  .               
T Consensus        38 L~~I~LyyngEY~R~Lf~L~---~lN------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv  108 (242)
T 3kae_A           38 LMSIVLYLNGEYTRALFHLH---KLN------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV  108 (242)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH---TCC------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred             hhhhhhhhcchHhHHHHHHH---hcc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence            45666777788877775543   222      234444489999999999999999999982  2               


Q ss_pred             CCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660         109 KPDYPKVKL-RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDL  152 (337)
Q Consensus       109 ~P~~~ka~~-r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~  152 (337)
                      ||.+-.-++ .+|..+..+|.-+||+.++.....++|-...+.++
T Consensus       109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnl  153 (242)
T 3kae_A          109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENL  153 (242)
T ss_dssp             CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHH
Confidence            344444444 45999999999999999999999998876665544

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.97  E-value=0.42  Score=42.57  Aligned_cols=62  Identities=15%  Similarity=0.023  Sum_probs=40.5

Q ss_pred             HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660          89 NFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVI  150 (337)
Q Consensus        89 ~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~  150 (337)
                      .++-|+.+.|+..+...++-+|.|.+....+.+.++-.|+++.|.+.++.+.+++|......
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a   68 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA   68 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence            34556666666666666666666666666666666666666666666666666666654443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.84  E-value=0.58  Score=41.65  Aligned_cols=63  Identities=14%  Similarity=0.108  Sum_probs=52.3

Q ss_pred             HHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660          49 NFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV  115 (337)
Q Consensus        49 n~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka  115 (337)
                      +.+++.|+.++|+......|+.+|.|.    .+...+-..+.-.|+|++|...++.+.+++|.....
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da----~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDA----SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            467889999999999999999999965    444444555556799999999999999999987654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.70  E-value=0.31  Score=46.45  Aligned_cols=104  Identities=13%  Similarity=0.094  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--CCCH---
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK--PDYP---  113 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~--P~~~---  113 (337)
                      +.+..+...|..+++.|++..|+++|.++......... ...++.+...+++..++|..+...+.+|..+-  ..++   
T Consensus       129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~-kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~  207 (429)
T 4b4t_R          129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA-KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR  207 (429)
T ss_dssp             CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence            45567789999999999999999999998876554433 55677778888889999999999999987652  1222   


Q ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660         114 -KVKLRAAQCLFHLKKFEDCTHLCDELLKEN  143 (337)
Q Consensus       114 -ka~~r~a~a~~~lg~~~eA~~~~~~al~l~  143 (337)
                       +.....|..++..++|.+|...|-.++.-.
T Consensus       208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence             333455777888999999999998887653

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.54  E-value=0.18  Score=51.57  Aligned_cols=61  Identities=13%  Similarity=0.114  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA  105 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A  105 (337)
                      +.-+..++..+..+|+|+.|+.+-.+|+...|.    .-..|..+|.||..+|+|+.|+-..+-+
T Consensus       337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs----eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALD----SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS----CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch----hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            446778899999999999999999999999999    5699999999999999999998665543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.92  E-value=0.81  Score=44.52  Aligned_cols=78  Identities=5%  Similarity=-0.138  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660          81 LYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus        81 ~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      ++.++|........+..|...|.+|+.++|++..+|..+|.+....|+.-+|+-+|-+++......+.+...+..+-.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            444556666666778999999999999999999999999999999999999999999999876666666655555443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=92.17  E-value=6.5  Score=37.80  Aligned_cols=95  Identities=14%  Similarity=0.053  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK-NYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg-~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ....+...++...+.+..+.|...|.+| . .|..   ...+|...|..-..++ +.+.|...++.+++.-|+.+..+..
T Consensus       285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~---~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~  359 (493)
T 2uy1_A          285 LDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGV---GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEE  359 (493)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCC---CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCC---ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHH
Confidence            3456677777777788899999999999 3 3331   3456766777777677 5999999999999999998887777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDEL  139 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~a  139 (337)
                      .+.....+|+.+.|...|+++
T Consensus       360 yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          360 FFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            788888899999999999998

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=91.70  E-value=3.3  Score=40.08  Aligned_cols=97  Identities=5%  Similarity=-0.106  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Q psy5660          43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP-DYPKVKLRAAQ  121 (337)
Q Consensus        43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P-~~~ka~~r~a~  121 (337)
                      .|-..-+.+.+.|++++|...+.+..+.... +  +...|+.+=.++.+.|+.++|...++...+..- -+...|..+-.
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~-P--d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~  183 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ-P--RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK  183 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C--ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            3444556667778888888887776654321 1  234555566666777888888877777665431 25566777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhh
Q psy5660         122 CLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       122 a~~~lg~~~eA~~~~~~al~l  142 (337)
                      ++...|+.++|.+.+++..+.
T Consensus       184 ~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          184 VSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhhCCCHHHHHHHHHHHHHh
Confidence            778888888888887776653

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=90.59  E-value=1.1  Score=43.55  Aligned_cols=80  Identities=15%  Similarity=0.085  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ  121 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~  121 (337)
                      ..+...|...--...+..|..+|.+|+.+.|+    ....|+.+|......|+.-.|+-.|.+++.....+..|.-++..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~----~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~  228 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPS----NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK  228 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCC----CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHH
Confidence            35567888888888899999999999999999    66899999999999999999999999999988778888888777


Q ss_pred             HHHh
Q psy5660         122 CLFH  125 (337)
Q Consensus       122 a~~~  125 (337)
                      .+..
T Consensus       229 ~f~~  232 (497)
T 1ya0_A          229 ALSK  232 (497)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.87  E-value=7.3  Score=37.03  Aligned_cols=105  Identities=15%  Similarity=0.096  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccc--cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh---hCCCC
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIK--CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK---LKPDY  112 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~--p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~---l~P~~  112 (337)
                      .+.|.-....+..++..|+|.+|.........-.  ..+......++.--...++..++|.+|...++++..   -.+.+
T Consensus       134 ~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~  213 (445)
T 4b4t_P          134 VERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY  213 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc
Confidence            3577778889999999999999999998865432  123334566777788889999999999999998742   23333


Q ss_pred             --HH--HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660         113 --PK--VKLRAAQCLFHLKKFEDCTHLCDELLKE  142 (337)
Q Consensus       113 --~k--a~~r~a~a~~~lg~~~eA~~~~~~al~l  142 (337)
                        .+  .+.-.|..+...++|.+|..+|..++..
T Consensus       214 ~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          214 ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence              23  3345688889999999999999999864

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=88.73  E-value=9  Score=36.94  Aligned_cols=99  Identities=7%  Similarity=0.004  Sum_probs=76.0

Q ss_pred             cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q psy5660          56 KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK-PDYPKVKLRAAQCLFHLKKFEDCTH  134 (337)
Q Consensus        56 ~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~-P~~~ka~~r~a~a~~~lg~~~eA~~  134 (337)
                      ..+.|.+.|.+....... +  +...|+.+-.++.+.|++++|+..+++..+.. ..+...|-.+-.++...|+.++|.+
T Consensus        85 ~l~~A~~lf~~M~~~G~~-P--d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~  161 (501)
T 4g26_A           85 GLSRGFDIFKQMIVDKVV-P--NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE  161 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCC-C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH
Confidence            468899999887765322 1  35678888889999999999999999887753 2367888889999999999999999


Q ss_pred             HHHHHHhh--CCCCHHHHHHHHHHH
Q psy5660         135 LCDELLKE--NPTDSTVIDLRTSCI  157 (337)
Q Consensus       135 ~~~~al~l--~P~~~~~~~~l~~~~  157 (337)
                      .++...+.  .|+......++.-+.
T Consensus       162 l~~~M~~~G~~Pd~~ty~~Li~~~~  186 (501)
T 4g26_A          162 VDAHMVESEVVPEEPELAALLKVSM  186 (501)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            99998865  466555555544443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=88.62  E-value=6.4  Score=32.60  Aligned_cols=81  Identities=9%  Similarity=-0.092  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ  121 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~  121 (337)
                      ..++..|..+..+|+++-|..+|.++=...            .+...|.-.|+-+.-....+.|...+-     +.....
T Consensus        35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~------------~L~~Ly~~tg~~e~L~kla~iA~~~g~-----~n~af~   97 (177)
T 3mkq_B           35 ITWERLIQEALAQGNASLAEMIYQTQHSFD------------KLSFLYLVTGDVNKLSKMQNIAQTRED-----FGSMLL   97 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTTCHH------------HHHHHHHHHTCHHHHHHHHHHHHHTTC-----HHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHhCCHH------------HHHHHHHHhCCHHHHHHHHHHHHHCcc-----HHHHHH
Confidence            357777777777777777777777644321            123333344554443333333332221     223345


Q ss_pred             HHHhcCCHHHHHHHHHHH
Q psy5660         122 CLFHLKKFEDCTHLCDEL  139 (337)
Q Consensus       122 a~~~lg~~~eA~~~~~~a  139 (337)
                      +++.+|++++|++.+.+.
T Consensus        98 ~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           98 NTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHTCHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHC
Confidence            677888888888877544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=87.98  E-value=3.7  Score=41.20  Aligned_cols=82  Identities=10%  Similarity=-0.050  Sum_probs=54.1

Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--------hhCCCCHHHHHH
Q psy5660          47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL--------KLKPDYPKVKLR  118 (337)
Q Consensus        47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al--------~l~P~~~ka~~r  118 (337)
                      +-..+...|+++.|.+....   +  +    ....|.++|...++.|+++.|...|.++=        .....+.+.+..
T Consensus       658 ~f~~~l~~~~~~~A~~~~~~---~--~----~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~  728 (814)
T 3mkq_A          658 KFELALKVGQLTLARDLLTD---E--S----AEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVT  728 (814)
T ss_dssp             HHHHHHHHTCHHHHHHHHTT---C--C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH
T ss_pred             heehhhhcCCHHHHHHHHHh---h--C----cHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHH
Confidence            34456677888888877532   1  1    23788888888888888888888887751        122445555566


Q ss_pred             HHHHHHhcCCHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCD  137 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~  137 (337)
                      +|......|++..|...|.
T Consensus       729 ~~~~a~~~~~~~~A~~~~~  747 (814)
T 3mkq_A          729 LAKDAETTGKFNLAFNAYW  747 (814)
T ss_dssp             HHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcCchHHHHHHHH
Confidence            6666666666666665543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.27  E-value=2.6  Score=45.22  Aligned_cols=93  Identities=11%  Similarity=0.015  Sum_probs=71.6

Q ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHcccc-CC------------------chHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660          45 KDEGNFNFKCNKYRNAIINYTEGLKIKC-AD------------------NDVNAQLYNNRAASNFFLKNYRSCLTDCQIA  105 (337)
Q Consensus        45 k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p-~~------------------~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A  105 (337)
                      .-+|..++..|++++|..+|.+|-..-. .+                  ....+.+|......+.+.|.++.++..++.|
T Consensus       846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA  925 (1139)
T 4fhn_B          846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA  925 (1139)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5689999999999999999998843210 00                  0113456777777888899999999999999


Q ss_pred             HhhCCCCH---H--HHHHHHHHHHhcCCHHHHHHHHH
Q psy5660         106 LKLKPDYP---K--VKLRAAQCLFHLKKFEDCTHLCD  137 (337)
Q Consensus       106 l~l~P~~~---k--a~~r~a~a~~~lg~~~eA~~~~~  137 (337)
                      |+..+...   +  -|.+.-++++.+|+|++|...+-
T Consensus       926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~  962 (1139)
T 4fhn_B          926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM  962 (1139)
T ss_dssp             HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred             HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            99765432   2  46788899999999999987764

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=84.12  E-value=4  Score=38.01  Aligned_cols=61  Identities=7%  Similarity=0.052  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL  106 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al  106 (337)
                      ......+..+...|++.+|+.....++..+|-    ...+|..+-.++...|+..+|+..|+++.
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~----~E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPY----REPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34456777788999999999999999999998    45788888899999999999999887754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=83.83  E-value=7.2  Score=39.02  Aligned_cols=47  Identities=2%  Similarity=-0.168  Sum_probs=36.1

Q ss_pred             HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5660          88 SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDEL  139 (337)
Q Consensus        88 ~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~a  139 (337)
                      ..+.+|+++.|.+.++     ..++...|-.+|..+...++++.|+.+|.++
T Consensus       661 ~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          661 LALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3456788888887653     3356788888888888888888888888875

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=83.00  E-value=2.9  Score=34.71  Aligned_cols=45  Identities=9%  Similarity=-0.042  Sum_probs=29.6

Q ss_pred             HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5660          90 FFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDEL  139 (337)
Q Consensus        90 ~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~a  139 (337)
                      +.+||++.|...++..     ++...|-++|.+.+..|+++-|..+|+++
T Consensus        16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            4567777776666543     45566667777777777777777776655

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=82.99  E-value=6  Score=28.39  Aligned_cols=18  Identities=6%  Similarity=-0.042  Sum_probs=9.9

Q ss_pred             HhcCCHHHHHHHHHHHHh
Q psy5660         124 FHLKKFEDCTHLCDELLK  141 (337)
Q Consensus       124 ~~lg~~~eA~~~~~~al~  141 (337)
                      -..|+|++|+.+|..|++
T Consensus        30 D~~g~y~eAl~lY~~aie   47 (83)
T 2w2u_A           30 DKEGNAEEAITNYKKAIE   47 (83)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHH
Confidence            345566666555555553

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=82.66  E-value=1.9  Score=31.01  Aligned_cols=33  Identities=27%  Similarity=0.343  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKI   70 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~   70 (337)
                      .+.|..+..+|...=+.|+|.+|+.+|.+||+.
T Consensus        16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   48 (83)
T 2w2u_A           16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEV   48 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            366778888888888889999999999888874

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=81.45  E-value=6.5  Score=28.12  Aligned_cols=18  Identities=17%  Similarity=0.139  Sum_probs=10.3

Q ss_pred             HhcCCHHHHHHHHHHHHh
Q psy5660         124 FHLKKFEDCTHLCDELLK  141 (337)
Q Consensus       124 ~~lg~~~eA~~~~~~al~  141 (337)
                      -..|+|++|+.+|..+++
T Consensus        22 D~~g~y~eAl~lY~~aie   39 (83)
T 2v6y_A           22 DKEGKVEDAITYYKKAIE   39 (83)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHH
Confidence            355666666666665554

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=81.39  E-value=7.3  Score=35.44  Aligned_cols=104  Identities=21%  Similarity=0.121  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHcccc----CCchHHHHH-------HHHHHHHHHHccCHHHHHHHHHHHHh-----
Q psy5660          44 YKDEGNFNFKCNKYRNAIINYTEGLKIKC----ADNDVNAQL-------YNNRAASNFFLKNYRSCLTDCQIALK-----  107 (337)
Q Consensus        44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p----~~~~~~~~~-------~~nra~~~~~lg~~~~Al~d~~~Al~-----  107 (337)
                      ....|-.++..|++.+|+..|+..|..-|    ++.+....+       .--.-...+.+.+-.-.-++-.+.++     
T Consensus       117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYF  196 (325)
T 3mv2_A          117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYF  196 (325)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHG
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence            45589999999999999999999998654    222211122       11111111122110000012233333     


Q ss_pred             ----hCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660         108 ----LKPDYPK-VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS  147 (337)
Q Consensus       108 ----l~P~~~k-a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~  147 (337)
                          +.|.+.- ++...-...++.++|.-|....++.|++.|..+
T Consensus       197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~  241 (325)
T 3mv2_A          197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP  241 (325)
T ss_dssp             GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred             ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence                3444332 333334556889999999999999999998633

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=80.62  E-value=2.5  Score=30.35  Aligned_cols=32  Identities=22%  Similarity=0.264  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKI   70 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~   70 (337)
                      +.|..+..+|...=+.|+|.+|+.+|.+||+.
T Consensus         9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   40 (83)
T 2v6y_A            9 DMARKYAILAVKADKEGKVEDAITYYKKAIEV   40 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            56777777888888888888888888887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	337
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-09
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	8e-09
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	9e-08
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	4e-07
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	7e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-04
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-06
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	7e-06
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-04
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	0.001

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 53.8 bits (128), Expect = 2e-09
 Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 11/155 (7%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC-----------ADNDVNAQLYNNRAA 87
           E A   K++G   FK  KY  A+I Y + +               A        + N A 
Sbjct: 13  EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 72

Query: 88  SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
               L+ Y   +  C  AL L     K   R  +    + +FE      +++L+ NP + 
Sbjct: 73  CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 132

Query: 148 TVIDLRTSCINKHKEILRNERKQAQQVKKEEKEKE 182
                   C  K KE    +R+    + K+  E++
Sbjct: 133 AARLQIFMCQKKAKEHNERDRRTYANMFKKFAEQD 167

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (125), Expect = 8e-09
 Identities = 34/179 (18%), Positives = 57/179 (31%), Gaps = 7/179 (3%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
           A   K++GN  F   KY  A   Y   +      N + A  Y NRA     ++     L 
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALA 59

Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC---I 157
           DC+ AL+L     K      QC   ++ +++                            I
Sbjct: 60  DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119

Query: 158 NKHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKLATSGKGDLKSFSDLEPNFPEI 216
            K K     E ++  Q  +      R++   RER+++         +    +      I
Sbjct: 120 AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACI 178

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 9e-08
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 16/159 (10%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD-----------NDVNAQLYNNRAA 87
           E +T  K+ G   FK  KY+ A++ Y + +     +             +    + N A 
Sbjct: 11  EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 70

Query: 88  SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
            +  L+ + + +  C  AL+L  +  K   R  +    +  FE       ++L+  P + 
Sbjct: 71  CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 130

Query: 148 TVIDLRTSCINKHKEILRNERKQAQQV-----KKEEKEK 181
                   C  + +  L  E+K    +     ++E K K
Sbjct: 131 AAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAK 169

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 46.9 bits (110), Expect = 4e-07
 Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 12/136 (8%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLK------------IKCADNDVNAQLYNNRA 86
           + A   K+EGN  FK N+   AI+ Y E L             +     ++      N A
Sbjct: 15  QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 74

Query: 87  ASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
                 K+Y   +      LK+  +  K   +      +    E+      +    NP +
Sbjct: 75  TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 134

Query: 147 STVIDLRTSCINKHKE 162
             + +    C+NK KE
Sbjct: 135 LDIRNSYELCVNKLKE 150

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 7e-07
 Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 12/143 (8%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD------------NDVNAQLYNNRA 86
            ++   K+ GN  FK   +  AI  YT+ L+                   V      N  
Sbjct: 25  LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG 84

Query: 87  ASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
           A    + +++  +  C  AL++ P   K   R AQ    LK+++       +  +  P D
Sbjct: 85  ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 144

Query: 147 STVIDLRTSCINKHKEILRNERK 169
             +         K K     E+ 
Sbjct: 145 KAIQAELLKVKQKIKAQKDKEKA 167

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 4/125 (3%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
                Y + GN   +   +  A+  Y   L +       +A ++ N A   +        
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP----NHAVVHGNLACVYYEQGLIDLA 256

Query: 99  LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158
           +   + A++L+P +P      A  L       +     +  L+  PT +  ++   +   
Sbjct: 257 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316

Query: 159 KHKEI 163
           +   I
Sbjct: 317 EQGNI 321

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 1e-06
 Identities = 6/91 (6%), Positives = 25/91 (27%), Gaps = 4/91 (4%)

Query: 46  DEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA 105
           +  +  ++   +  A  +  +  +        N  +    ++ +F  +          +A
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA 59

Query: 106 LKLKPDYPKVKLRAAQCLFHLKKFEDCTHLC 136
           +K  P   +             + ++     
Sbjct: 60  IKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 6e-06
 Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 48  GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107
            N   +      A+  Y + L++        A  ++N A+        +  L   + A++
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367

Query: 108 LKPDYPKVKLRAAQCLFHLK 127
           + P +          L  ++
Sbjct: 368 ISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 6e-05
 Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 4/109 (3%)

Query: 39  ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
                Y +  N   +      A   Y   L++     D      NN A       N    
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS----LNNLANIKREQGNIEEA 324

Query: 99  LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
           +   + AL++ P++       A  L    K ++      E ++ +PT +
Sbjct: 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 11/64 (17%), Positives = 24/64 (37%)

Query: 84  NRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN 143
             A   +   ++ +    C    + +PD   V L  +   F  ++ +   H     +K+N
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 144 PTDS 147
           P  +
Sbjct: 64  PLLA 67

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 35/146 (23%), Positives = 50/146 (34%), Gaps = 4/146 (2%)

Query: 32  PLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF 91
           P  +   + A   K + N  FK   Y NAI  Y+         N  NA  Y NR+ +   
Sbjct: 1   PPADGALKRAEELKTQANDYFKAKDYENAIKFYS----QAIELNPSNAIYYGNRSLAYLR 56

Query: 92  LKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVID 151
            + Y   L D   A++L   Y K   R A     L KF       + ++K  P D     
Sbjct: 57  TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM 116

Query: 152 LRTSCINKHKEILRNERKQAQQVKKE 177
               C    K+          + K+ 
Sbjct: 117 KYQECNKIVKQKAFERAIAGDEHKRS 142

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 12/104 (11%), Positives = 31/104 (29%), Gaps = 7/104 (6%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
           A +  +EG        ++ A+  ++          D ++++  N       LKN      
Sbjct: 5   AISLWNEGVLAADKKDWKGALDAFSA-------VQDPHSRICFNIGCMYTILKNMTEAEK 57

Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP 144
               ++           +     +  +K++       E L +  
Sbjct: 58  AFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 101

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 7e-06
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 11/120 (9%)

Query: 41  ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
           A   K+ GN  +K   +  A+ +Y +  ++    +  N     N+AA  F   +Y  C  
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKEL----DPTNMTYITNQAAVYFEKGDYNKCRE 59

Query: 101 DCQIALKLKPDYP-------KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLR 153
            C+ A+++  +         K   R     F  +K++D  H  ++ L E+ T   +   +
Sbjct: 60  LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 16/81 (19%), Positives = 25/81 (30%)

Query: 56  KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV 115
           +    +    + L  +   +D  AQL   R      L        D   AL ++PD P+V
Sbjct: 14  QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 73

Query: 116 KLRAAQCLFHLKKFEDCTHLC 136
                  L     F+      
Sbjct: 74  FNYLGIYLTQAGNFDAAYEAF 94

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 15/153 (9%), Positives = 43/153 (28%), Gaps = 4/153 (2%)

Query: 34  ENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK 93
           E  P        +EG    +     NA++ +   ++     +  + + +     +    +
Sbjct: 12  EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEAWQYLGTTQAENE 67

Query: 94  NYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLR 153
                ++  +  L+LKPD     +  A    +         +  + L+  P  + ++   
Sbjct: 68  QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA 127

Query: 154 TSCINKHKEILRNERKQAQQVKKEEKEKERVLQ 186
                            +        E + +  
Sbjct: 128 EEGAGGAGLGPSKRILGSLLSDSLFLEVKELFL 160

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 22/172 (12%), Positives = 45/172 (26%), Gaps = 27/172 (15%)

Query: 32  PLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIK--------CADNDVNAQLYN 83
           PL+      A     +        +Y  A  N    ++I               +A  + 
Sbjct: 2   PLKEVVG--AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHA 59

Query: 84  NRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN 143
             A +   L+++   L     AL       ++     +                      
Sbjct: 60  GLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALAL--------- 110

Query: 144 PTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKL 195
                          K  E+        ++ K E   KER++++  +R  +L
Sbjct: 111 -DGLGRGAEAMPEFKKVVEM-------IEERKGETPGKERMMEVAIDRIAQL 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	337
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.87
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.86
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.86
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.85
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.81
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.81
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.69
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.62
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.58
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.58
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.58
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.57
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.56
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.52
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.51
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.5
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.49
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.43
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.42
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.39
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.37
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.33
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.22
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.21
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.19
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.16
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.16
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.12
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.1
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.08
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.08
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.07
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.05
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.99
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.94
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.83
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.81
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.77
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.7
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.66
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.61
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.59
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.5
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.41
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.16
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.12
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.09
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.07
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.02
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.79
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.44
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.41
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.05
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	91.44
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	82.95
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	81.26

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.87  E-value=1.6e-21  Score=160.87  Aligned_cols=126  Identities=21%  Similarity=0.231  Sum_probs=113.6

Q ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc------------hHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy5660          35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN------------DVNAQLYNNRAASNFFLKNYRSCLTDC  102 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~------------~~~~~~~~nra~~~~~lg~~~~Al~d~  102 (337)
                      .+..+.|..+++.||.+|+.|+|..|+..|++||...+...            .+...+|+|+|.||+++|+|++|+.+|
T Consensus        11 ~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~   90 (153)
T d2fbna1          11 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA   90 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhh
Confidence            44557788999999999999999999999999998765432            235678999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660         103 QIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH  160 (337)
Q Consensus       103 ~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~  160 (337)
                      ++||+++|.++++|+++|.++..+|++++|+.+|+++++++|+|..+...+..+..+.
T Consensus        91 ~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          91 SKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             hccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988887776543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.86  E-value=1.3e-20  Score=157.68  Aligned_cols=125  Identities=23%  Similarity=0.294  Sum_probs=113.5

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc-----------hHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN-----------DVNAQLYNNRAASNFFLKNYRSCLTDCQIA  105 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~-----------~~~~~~~~nra~~~~~lg~~~~Al~d~~~A  105 (337)
                      ..+.|..+++.||.+|+.|+|.+|+.+|++||...+...           .+...+|.|+|.|++++|+|.+|+.+|++|
T Consensus        11 ~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~a   90 (168)
T d1kt1a1          11 KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA   90 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhh
Confidence            446789999999999999999999999999998755422           346788999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy5660         106 LKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHK  161 (337)
Q Consensus       106 l~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~  161 (337)
                      ++++|++.++++++|.++..+|++++|+.+|+++++++|+|..+...+..+.....
T Consensus        91 l~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  146 (168)
T d1kt1a1          91 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK  146 (168)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred             hhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999888888765543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.1e-21  Score=151.23  Aligned_cols=115  Identities=25%  Similarity=0.347  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .+..++++||.+++.|+|++|+.+|+++|+.+|.    .+.+|.|+|.|+.++|++.+|+.+|.+|++++|+++.+|+++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~   77 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH----NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK   77 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----chhhhhcccccccccccccccchhhhhHHHhccchhhHHHHH
Confidence            5678999999999999999999999999999999    568999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      |.++..+|++++|+.+|+++++++|+++.+...++.++.
T Consensus        78 g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          78 AAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            999999999999999999999999999999888877753

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.7e-20  Score=156.08  Aligned_cols=125  Identities=19%  Similarity=0.290  Sum_probs=115.0

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc-----------hHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN-----------DVNAQLYNNRAASNFFLKNYRSCLTDCQIA  105 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~-----------~~~~~~~~nra~~~~~lg~~~~Al~d~~~A  105 (337)
                      ..+.|..+++.||.+|+.|+|++|+.+|++||...|...           .+...+|.|+|.|++++|+|.+|+.+|++|
T Consensus         9 k~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~a   88 (170)
T d1p5qa1           9 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA   88 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhh
Confidence            346789999999999999999999999999999877543           356788999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy5660         106 LKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHK  161 (337)
Q Consensus       106 l~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~  161 (337)
                      |+++|+++++++++|.|+..+|++++|+.+|+++++++|+|+.+...+..+..+..
T Consensus        89 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1          89 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             hhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888876543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=6.5e-20  Score=151.58  Aligned_cols=120  Identities=26%  Similarity=0.328  Sum_probs=113.4

Q ss_pred             ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660          36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV  115 (337)
Q Consensus        36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka  115 (337)
                      +..+.|+.++.+||.+|+.|+|++|+.+|+++|+++|+    ...+|.|+|.|++.+|++.+|+.+|++||+++|++..+
T Consensus         5 ~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a   80 (159)
T d1a17a_           5 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS----NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG   80 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchh----hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHH
Confidence            34588999999999999999999999999999999999    67999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ++++|.++..+|++++|+.+++++++++|++..+...+..+...
T Consensus        81 ~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~  124 (159)
T d1a17a_          81 YYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI  124 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998887777543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=4e-19  Score=148.28  Aligned_cols=122  Identities=21%  Similarity=0.263  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC------------chHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD------------NDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL  106 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~------------~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al  106 (337)
                      +.+..+++.|+.+++.|+|.+|+..|++||...+..            ......+|.|||.|+.++|+|++|+.+|++||
T Consensus        25 ~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  104 (169)
T d1ihga1          25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  104 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhh
Confidence            567889999999999999999999999999764321            13477899999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660         107 KLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH  160 (337)
Q Consensus       107 ~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~  160 (337)
                      +++|+++++|+++|.++..+|++++|+..|+++++++|+|..+...+..+....
T Consensus       105 ~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1         105 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988888876543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=6.7e-20  Score=155.49  Aligned_cols=104  Identities=22%  Similarity=0.316  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .|+.++++||.+|+.|+|++|+..|++||.++|.    ++.+|+|+|.|++++|+|++|+.+|++|++++|+++.+|+++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~----~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l   78 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   78 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence            3678999999999999999999999999999999    679999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENPTDS  147 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P~~~  147 (337)
                      |.++..+|++++|+.+|+++++++|++.
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            9999999999999999999999988653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.8e-18  Score=134.95  Aligned_cols=113  Identities=23%  Similarity=0.367  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-----
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP-----  113 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~-----  113 (337)
                      ..|..+++.||.+|..|+|++|+.+|+++|+++|+    +..++.|+|.|+.++|+|++|+.+|++||+++|++.     
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~   77 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPT----NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ   77 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHH
Confidence            56899999999999999999999999999999998    568999999999999999999999999999998774     


Q ss_pred             --HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         114 --KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       114 --ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                        ++|+++|.++..++++++|+.+|++++..+++ ......+..+
T Consensus        78 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~  121 (128)
T d1elra_          78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQA  121 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence              57888999999999999999999999999865 4454444444

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=7.2e-16  Score=134.99  Aligned_cols=118  Identities=14%  Similarity=0.098  Sum_probs=110.4

Q ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q psy5660          35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK  114 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k  114 (337)
                      .++.+.|..+..+|+.+++.|+|+.|+..|++||.++|+    .+.+|.++|.|+.++|++++|+.++++|++++|++..
T Consensus        31 ~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  106 (259)
T d1xnfa_          31 LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY  106 (259)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC----CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhh
Confidence            567789999999999999999999999999999999999    5689999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660         115 VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC  156 (337)
Q Consensus       115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  156 (337)
                      +++++|.++..+|++++|+..++++++++|++......+..+
T Consensus       107 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  148 (259)
T d1xnfa_         107 AHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  148 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            999999999999999999999999999999988765555443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.3e-15  Score=120.42  Aligned_cols=111  Identities=11%  Similarity=0.004  Sum_probs=100.5

Q ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHhhCCCC--HHHHHHH
Q psy5660          45 KDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF---LKNYRSCLTDCQIALKLKPDY--PKVKLRA  119 (337)
Q Consensus        45 k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~---lg~~~~Al~d~~~Al~l~P~~--~ka~~r~  119 (337)
                      -+..|.+...+++++|.+.|.+++..+|.    ...+++|+|.|+++   .+++++|+..+++++..+|.+  ..+++.+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~----~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~L   78 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV----SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL   78 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence            35788899999999999999999999999    56899999999986   556778999999999999876  4589999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      |.+|..+|++++|+.+|+++|+++|+|..+..++..+.++
T Consensus        79 g~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          79 AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988877654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.58  E-value=2.6e-15  Score=123.23  Aligned_cols=106  Identities=13%  Similarity=0.069  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCch--------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADND--------VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD-  111 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~--------~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~-  111 (337)
                      |..++..|+.++..|+|++|+..|++||++.|..++        ..+.+|.|+|.|+..+|+|.+|+.+|++|+++.|. 
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            445556699999999999999999999999887543        24689999999999999999999999999987542 


Q ss_pred             ----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660         112 ----------YPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD  146 (337)
Q Consensus       112 ----------~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~  146 (337)
                                ..++++++|.++..+|++++|+.+|++++++.|..
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence                      35689999999999999999999999999996654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.3e-14  Score=132.63  Aligned_cols=124  Identities=11%  Similarity=0.110  Sum_probs=110.4

Q ss_pred             hccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc-CHHHHHHHHHH
Q psy5660          26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK-NYRSCLTDCQI  104 (337)
Q Consensus        26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg-~~~~Al~d~~~  104 (337)
                      .+|.++|      +.++++-..|..+.+.+++++|+..|++||+++|.    +..+|+|||.|+..+| ++++|+.++++
T Consensus        34 ~~I~~~p------~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~----~~~a~~~r~~~l~~l~~~~~eal~~~~~  103 (315)
T d2h6fa1          34 VQIIYSD------KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA----NYTVWHFRRVLLKSLQKDLHEEMNYITA  103 (315)
T ss_dssp             SEECCCH------HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             cccccCH------HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC----ChHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence            4677776      88889989999999999999999999999999998    6789999999988887 58999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       105 Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      |++++|++..+|+.+|.++..+|++++|+.+++++++++|+|..+...++.+...
T Consensus       104 al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~  158 (315)
T d2h6fa1         104 IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE  158 (315)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888888777665

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7.6e-15  Score=134.16  Aligned_cols=124  Identities=14%  Similarity=0.104  Sum_probs=114.8

Q ss_pred             hccccCCCCCChHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660          26 QQLKYDPLENTPEELATTYKDEGNFNFKCN-KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQI  104 (337)
Q Consensus        26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g-~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~  104 (337)
                      ++|..+|      +.+.++..+|+.+...| ++++|+.+|.++|+.+|+    +..+|.+||.++.++|++.+|+.++++
T Consensus        68 ~ai~lnP------~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~----~~~a~~~~~~~~~~l~~~~eAl~~~~k  137 (315)
T d2h6fa1          68 DAIELNA------ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK----NYQVWHHRRVLVEWLRDPSQELEFIAD  137 (315)
T ss_dssp             HHHHHCT------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred             HHHHHCC------CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh----hhhHHHHHhHHHHhhccHHHHHHHHhh
Confidence            3566777      77889999999999876 599999999999999999    679999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       105 Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      |++++|++..+|+.+|.++..+|++++|+.+|+++++++|.|..+...++.+...
T Consensus       138 al~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~  192 (315)
T d2h6fa1         138 ILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  192 (315)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998888776543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.57  E-value=5.4e-15  Score=114.64  Aligned_cols=96  Identities=10%  Similarity=-0.006  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA  120 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a  120 (337)
                      .....+.|..+++.|++.+|+.+|++++..+|+    .+.+|.++|.|+.++|++.+|+.++++|++++|++..+++.+|
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la   91 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA   91 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccc----cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHH
Confidence            344567899999999999999999999999998    6699999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHH
Q psy5660         121 QCLFHLKKFEDCTHLCDELL  140 (337)
Q Consensus       121 ~a~~~lg~~~eA~~~~~~al  140 (337)
                      .++..+|++++|++++++.|
T Consensus        92 ~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          92 VSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHh
Confidence            99999999999999999876

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.5e-14  Score=121.45  Aligned_cols=100  Identities=11%  Similarity=0.117  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .+..+.++|..++..|+|+.|++.|+++   .+.    ++.+|+|+|.|++.+|+|++|+.+|++||+++|+++.+|+++
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~----~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~   76 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAV---QDP----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQR   76 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTS---SSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhc---CCC----CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHH
Confidence            4567789999999999999999999864   333    457899999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660         120 AQCLFHLKKFEDCTHLCDELLKENPTD  146 (337)
Q Consensus       120 a~a~~~lg~~~eA~~~~~~al~l~P~~  146 (337)
                      |.++..+|++++|+..|++++...+.|
T Consensus        77 g~~~~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          77 GMLYYQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhCccC
Confidence            999999999999999999999987765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.7e-14  Score=128.82  Aligned_cols=118  Identities=15%  Similarity=0.157  Sum_probs=103.0

Q ss_pred             hccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660          26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA  105 (337)
Q Consensus        26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A  105 (337)
                      +++..+|+..    .+..+...|..+...|++++|+.+|++++...|+    .+.+|.++|.++..+|++++|+..|++|
T Consensus       161 ~al~~~p~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~a  232 (323)
T d1fcha_         161 AAVRLDPTSI----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN----DYLLWNKLGATLANGNQSEEAVAAYRRA  232 (323)
T ss_dssp             HHHHHSTTSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhhccc----ccccchhhHHHHHHHHHHhhhhcccccccccccc----cccchhhhhhcccccccchhHHHHHHHH
Confidence            3455665222    2567788999999999999999999999999998    5689999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660         106 LKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVID  151 (337)
Q Consensus       106 l~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~  151 (337)
                      ++++|+++.+++.+|.++..+|++++|+..|+++++++|++.....
T Consensus       233 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  278 (323)
T d1fcha_         233 LELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG  278 (323)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred             HHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhh
Confidence            9999999999999999999999999999999999999999876543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.51  E-value=2.7e-14  Score=115.86  Aligned_cols=107  Identities=10%  Similarity=0.069  Sum_probs=94.6

Q ss_pred             HHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660          48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL----------KNYRSCLTDCQIALKLKPDYPKVKL  117 (337)
Q Consensus        48 Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l----------g~~~~Al~d~~~Al~l~P~~~ka~~  117 (337)
                      ++.+-+.+.|++|+..|++|++++|+    ++.+++|+|.++..+          +.+++|+..+++|++++|++..+|+
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~~P~----~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~   79 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKSNPL----DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW   79 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHhhCCc----chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHh
Confidence            34456677899999999999999999    669999999999865          5568999999999999999999999


Q ss_pred             HHHHHHHhcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660         118 RAAQCLFHLKK-----------FEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus       118 r~a~a~~~lg~-----------~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      ++|.++..+|+           |++|+++|+++++++|+|..+...++.+.+
T Consensus        80 ~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~k  131 (145)
T d1zu2a1          80 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK  131 (145)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             hHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHH
Confidence            99999988764           799999999999999999998888777653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.4e-13  Score=115.21  Aligned_cols=102  Identities=12%  Similarity=0.032  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--------
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY--------  112 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~--------  112 (337)
                      +..+.+.|+.++..|+|++|+.+|++||+++|+    .+.+|.|||.|+.++|+|.+|+.+|++|+...+.+        
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~----~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~  111 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKH----LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKIL  111 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGG
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh----hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHh
Confidence            467889999999999999999999999999999    67999999999999999999999999999986654        


Q ss_pred             --------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660         113 --------PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD  146 (337)
Q Consensus       113 --------~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~  146 (337)
                              ..+++++|.++..+|++++|++.+.+++++.|+.
T Consensus       112 ~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         112 GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             TBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             hhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence                    4788999999999999999999999999998863

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.1e-13  Score=125.55  Aligned_cols=117  Identities=15%  Similarity=0.057  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ..+..+...|..+++.|++++|+..|+++++.+|+    ...++.++|.++..+|++.+|+..+++++...|.+..+++.
T Consensus       235 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  310 (388)
T d1w3ba_         235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH----FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN  310 (388)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS----CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhH
Confidence            34567778888889999999999999999988887    45778888888888888888888888888888888888888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +|.++..+|++++|+.+|+++++++|++..+...++.+...
T Consensus       311 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  351 (388)
T d1w3ba_         311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ  351 (388)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888877777655

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.6e-12  Score=117.65  Aligned_cols=117  Identities=15%  Similarity=0.217  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ..+..+...|+.++..|++++|+..|.+++...+.    ....+.++|.++.++|++++|+..+++|++++|++..+++.
T Consensus       201 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  276 (388)
T d1w3ba_         201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN  276 (388)
T ss_dssp             TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred             ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            44567777888888888888888888888887776    45677778888888888888888888888888888888888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +|.++..+|++.+|+..++.++...|.+......+..+...
T Consensus       277 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (388)
T d1w3ba_         277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence            88888888888888888888888888877777666666543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=3.7e-12  Score=110.80  Aligned_cols=105  Identities=20%  Similarity=0.144  Sum_probs=96.2

Q ss_pred             CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy5660          55 NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTH  134 (337)
Q Consensus        55 g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~  134 (337)
                      .+++.|+..+++++...+..+...+.+|+++|.++.++|+|++|+.++++||+++|+++.+|+++|.++..+|++++|+.
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            35778899999999876655566889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         135 LCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       135 ~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +|+++++++|++..+...++.+...
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~  117 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             hhhHHHHHHhhhhhhHHHHHHHHHH
Confidence            9999999999999998888887655

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.1e-12  Score=117.90  Aligned_cols=102  Identities=12%  Similarity=0.133  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660          43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQC  122 (337)
Q Consensus        43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a  122 (337)
                      ...++|..+++.|+|++|+.+|+++|+.+|+    +..+|.++|.|+..+|++.+|+..+.+|++++|++..+++.+|.+
T Consensus        21 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   96 (323)
T d1fcha_          21 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK----HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS   96 (323)
T ss_dssp             SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccc
Confidence            3468999999999999999999999999999    568999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCHH
Q psy5660         123 LFHLKKFEDCTHLCDELLKENPTDST  148 (337)
Q Consensus       123 ~~~lg~~~eA~~~~~~al~l~P~~~~  148 (337)
                      +..+|++++|++.+++++.++|.+..
T Consensus        97 ~~~~~~~~~A~~~~~~~~~~~~~~~~  122 (323)
T d1fcha_          97 FTNESLQRQACEILRDWLRYTPAYAH  122 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTGG
T ss_pred             ccccccccccccchhhHHHhccchHH
Confidence            99999999999999999999988643

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.8e-12  Score=97.13  Aligned_cols=86  Identities=9%  Similarity=0.082  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc---hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN---DVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL  117 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~---~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~  117 (337)
                      |+.+.+.|+.+++.|+|..|+..|++|+++.|.+.   ...+.++.|+|.|+.++|+|++|+..+++||+++|++..|+.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            56788999999999999999999999999876532   225789999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q psy5660         118 RAAQCLFHL  126 (337)
Q Consensus       118 r~a~a~~~l  126 (337)
                      +++.....+
T Consensus        85 Nl~~~~~~l   93 (95)
T d1tjca_          85 NLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            987766544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.33  E-value=3.1e-11  Score=100.97  Aligned_cols=120  Identities=9%  Similarity=0.048  Sum_probs=103.6

Q ss_pred             hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc------------------hHHHHHHHHHHHHHHHccCHHHH
Q psy5660          37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN------------------DVNAQLYNNRAASNFFLKNYRSC   98 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~------------------~~~~~~~~nra~~~~~lg~~~~A   98 (337)
                      .....+.+.+.|+.++..|++++|+..|++|+.+.+++.                  .....++.++|.++..+|++.+|
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            346788899999999999999999999999999876532                  23457889999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HhhCCCCHHHHHHHHHHH
Q psy5660          99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDEL-------LKENPTDSTVIDLRTSCI  157 (337)
Q Consensus        99 l~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~a-------l~l~P~~~~~~~~l~~~~  157 (337)
                      +.+|++++.++|.+..+|.+++.++..+|++.+|++.|+++       +-++|. +++..+...+.
T Consensus        87 l~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~-~~l~~l~~~il  151 (179)
T d2ff4a2          87 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG-PTLRALNERIL  151 (179)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998       446775 55555555543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8.4e-12  Score=96.86  Aligned_cols=92  Identities=18%  Similarity=0.200  Sum_probs=84.0

Q ss_pred             HHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy5660          23 EGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDC  102 (337)
Q Consensus        23 ealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~  102 (337)
                      -..++|..+|      +.+..+...|+.+++.|+|.+|+..|++++.++|+    +..+|.|+|.|+..+|+|++|+.++
T Consensus        25 ~~~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~g~~~~~~~~~~~A~~~~   94 (117)
T d1elwa_          25 CYSEAIKLDP------HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD----WGKGYSRKAAALEFLNRFEEAKRTY   94 (117)
T ss_dssp             HHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhcCC------cchhhhhcccccccccccccccchhhhhHHHhccc----hhhHHHHHHHHHHHccCHHHHHHHH
Confidence            3445678888      67889999999999999999999999999999999    5589999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHH
Q psy5660         103 QIALKLKPDYPKVKLRAAQCLF  124 (337)
Q Consensus       103 ~~Al~l~P~~~ka~~r~a~a~~  124 (337)
                      ++|++++|++..++..++.+..
T Consensus        95 ~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          95 EEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHhC
Confidence            9999999999999998887753

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.22  E-value=1e-10  Score=89.82  Aligned_cols=82  Identities=10%  Similarity=-0.057  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660          79 AQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus        79 ~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      ...++++|.++++.|++.+|+..+++|++.+|+++.+|+.+|.++..+|++++|+.+++++++++|++..+...++.+..
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999998888876


Q ss_pred             HH
Q psy5660         159 KH  160 (337)
Q Consensus       159 ~~  160 (337)
                      ..
T Consensus        96 ~~   97 (112)
T d1hxia_          96 NE   97 (112)
T ss_dssp             HH
T ss_pred             HC
Confidence            53

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.21  E-value=4.9e-11  Score=98.20  Aligned_cols=91  Identities=20%  Similarity=0.230  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      ..+..+.++|..+++.|+|++|+..|+++|+++|+    ++.+|.++|.|+..+|+|+.|+.++++|++++|++..++..
T Consensus        75 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~----~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~  150 (169)
T d1ihga1          75 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS----NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE  150 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh----hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            56677888999999999999999999999999998    66899999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHH
Q psy5660         119 AAQCLFHLKKFEDCT  133 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~  133 (337)
                      ++.+...+....++.
T Consensus       151 l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         151 LLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999988777666654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.5e-11  Score=96.85  Aligned_cols=103  Identities=24%  Similarity=0.319  Sum_probs=87.9

Q ss_pred             HHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHH
Q psy5660          22 VEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTD  101 (337)
Q Consensus        22 lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d  101 (337)
                      -..-++|..+|      ..+..+...|..++..|++++|+.+|.++|+++|+    ...+|.++|.|+..+|+|.+|+.+
T Consensus        31 ~~~~~al~~~p------~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~----~~~a~~~~g~~~~~~g~~~eA~~~  100 (159)
T d1a17a_          31 KFYSQAIELNP------SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK----YIKGYYRRAASNMALGKFRAALRD  100 (159)
T ss_dssp             HHHHHHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhhhccccch------hhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc----chHHHHHHHHHHHHcCCHHHHHHH
Confidence            33445677888      67899999999999999999999999999999999    568899999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHh--cCCHHHHHH
Q psy5660         102 CQIALKLKPDYPKVKLRAAQCLFH--LKKFEDCTH  134 (337)
Q Consensus       102 ~~~Al~l~P~~~ka~~r~a~a~~~--lg~~~eA~~  134 (337)
                      ++++++++|++..++..++.+...  .+.+++|+.
T Consensus       101 ~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_         101 YETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999998887766433  333444443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.1e-10  Score=87.16  Aligned_cols=81  Identities=11%  Similarity=-0.002  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660          79 AQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY-------PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVID  151 (337)
Q Consensus        79 ~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~-------~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~  151 (337)
                      +.-++++|.++++.|+|.+|+..+++|+++.|.+       ..++..+|.++..+|++++|+..|+++|+++|++..+..
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            4456789999999999999999999999986643       578999999999999999999999999999999999988


Q ss_pred             HHHHHHHH
Q psy5660         152 LRTSCINK  159 (337)
Q Consensus       152 ~l~~~~~~  159 (337)
                      .+..+++.
T Consensus        85 Nl~~~~~~   92 (95)
T d1tjca_          85 NLKYFEYI   92 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87766543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=3.1e-10  Score=94.58  Aligned_cols=81  Identities=15%  Similarity=0.157  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660          79 AQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus        79 ~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      +.-+.+.|.++++.|+|++|+..+++||+++|.++.+|+++|.||..+|++++|+.+|+++++++|++..+...++.+..
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            45577899999999999999999999999999999999999999999999999999999999999999999998888877


Q ss_pred             H
Q psy5660         159 K  159 (337)
Q Consensus       159 ~  159 (337)
                      .
T Consensus        84 ~   84 (201)
T d2c2la1          84 E   84 (201)
T ss_dssp             H
T ss_pred             H
Confidence            6

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.12  E-value=2.9e-10  Score=93.55  Aligned_cols=88  Identities=17%  Similarity=0.315  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660          40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA  119 (337)
Q Consensus        40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~  119 (337)
                      .+..+.+.|.++++.|+|.+|+.+|+++|.++|+    +..+|+++|.|+..+|+|++|+.++.+|++++|++..+...+
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~----~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l  138 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA----NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI  138 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4556778999999999999999999999999998    669999999999999999999999999999999999999888


Q ss_pred             HHHHHhcCCHHH
Q psy5660         120 AQCLFHLKKFED  131 (337)
Q Consensus       120 a~a~~~lg~~~e  131 (337)
                      +.+...++.+.+
T Consensus       139 ~~~~~~~~~~~e  150 (168)
T d1kt1a1         139 FMCQKKAKEHNE  150 (168)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHH
Confidence            888766665543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=4.3e-10  Score=92.75  Aligned_cols=89  Identities=16%  Similarity=0.245  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA  120 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a  120 (337)
                      +..+.+.|..+++.|+|++|+.+++++|.++|+    +..+|+++|.|+..+|+|.+|+.++++|++++|+|..+...++
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~----~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~  137 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALELDSN----NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA  137 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhcccc----chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            456678999999999999999999999999999    5689999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHH
Q psy5660         121 QCLFHLKKFEDCT  133 (337)
Q Consensus       121 ~a~~~lg~~~eA~  133 (337)
                      .+...++...+..
T Consensus       138 ~~~~~~~~~~~~e  150 (170)
T d1p5qa1         138 VCQQRIRRQLARE  150 (170)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8887776665543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=8.9e-10  Score=86.43  Aligned_cols=78  Identities=14%  Similarity=0.242  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTS  155 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~  155 (337)
                      .+..+-++|.+++..|+|++|+..+++||+++|++..+++++|.|+..+|+|++|+.+|+++++++|++......++.
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~   80 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            356678899999999999999999999999999999999999999999999999999999999999988655444443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.08  E-value=3.1e-10  Score=92.03  Aligned_cols=83  Identities=18%  Similarity=0.197  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA  120 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a  120 (337)
                      +..+.++|..+++.|+|.+|+.+|+++|+++|.    +..+|+++|.|+..+|+|..|+.++++|++++|+|..+...++
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~----~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~  142 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN----NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE  142 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccch----hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            456778999999999999999999999999999    5689999999999999999999999999999999999988888


Q ss_pred             HHHHhcC
Q psy5660         121 QCLFHLK  127 (337)
Q Consensus       121 ~a~~~lg  127 (337)
                      .+...++
T Consensus       143 ~~~~kl~  149 (153)
T d2fbna1         143 LCVNKLK  149 (153)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8766553

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.2e-10  Score=112.28  Aligned_cols=115  Identities=7%  Similarity=-0.072  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR  118 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r  118 (337)
                      +.+..+.+.|..+.+.|++..|+..|.+++..+|.      .++.|+|.++..+|+|++|+..|++|++++|++..+|+.
T Consensus       118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~  191 (497)
T d1ya0a1         118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ------HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQ  191 (497)
T ss_dssp             -------------------------CCHHHHHHHH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHH
T ss_pred             hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHH
Confidence            56677788899999999999999999999988775      688999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      +|.++...|++.+|+.+|.+++.++|....+...+..+..+
T Consensus       192 Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         192 LAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988888776543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1e-10  Score=91.52  Aligned_cols=96  Identities=15%  Similarity=0.049  Sum_probs=80.8

Q ss_pred             HHhhccccCCCCCChHHHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHH
Q psy5660          23 EGLQQLKYDPLENTPEELATTYKDEGNFNFKCN---KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL   99 (337)
Q Consensus        23 ealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g---~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al   99 (337)
                      .+.++|..+|      ..+..+.+.|+.+++.+   ++++|+..|++++..+|.+.  ...+++|+|.||.++|+|.+|+
T Consensus        21 ~Y~~aL~~~p------~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~--~~~~~~~Lg~~y~~~g~~~~A~   92 (122)
T d1nzna_          21 KFQSEKAAGS------VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE--QRDYVFYLAVGNYRLKEYEKAL   92 (122)
T ss_dssp             HHHHHHHHSC------CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH--HHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHhhCC------CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCch--HHHHHHHHHHHHHHHhhhHHHH
Confidence            4556788888      67789999999998754   56789999999999877522  3568999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHhc
Q psy5660         100 TDCQIALKLKPDYPKVKLRAAQCLFHL  126 (337)
Q Consensus       100 ~d~~~Al~l~P~~~ka~~r~a~a~~~l  126 (337)
                      ..+++||+++|++..|...++.+..++
T Consensus        93 ~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          93 KYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            999999999999999988877765543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.99  E-value=3.4e-10  Score=91.12  Aligned_cols=99  Identities=14%  Similarity=0.063  Sum_probs=83.6

Q ss_pred             HhhccccCCCCCChHHHHHHHHHHHHHHHHh----------CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc
Q psy5660          24 GLQQLKYDPLENTPEELATTYKDEGNFNFKC----------NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK   93 (337)
Q Consensus        24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~----------g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg   93 (337)
                      +-+++..+|      ..+..+...|..++..          +.+++|+..|++||+++|+    +..+|.|+|.++..+|
T Consensus        20 ~e~al~~~P------~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~----~~~a~~~lG~~y~~~g   89 (145)
T d1zu2a1          20 AENTYKSNP------LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK----KDEAVWCIGNAYTSFA   89 (145)
T ss_dssp             HHHHHHHCT------TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhCC------cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch----hhHHHhhHHHHHHHcc
Confidence            345677888      7889999999999854          4568999999999999999    5689999999998876


Q ss_pred             -----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q psy5660          94 -----------NYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDC  132 (337)
Q Consensus        94 -----------~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA  132 (337)
                                 +|.+|+..+++|++++|++..++..++.+....+.+.++
T Consensus        90 ~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          90 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             cchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                       479999999999999999999988888887665555554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.94  E-value=1.7e-09  Score=97.88  Aligned_cols=130  Identities=14%  Similarity=0.048  Sum_probs=106.5

Q ss_pred             hccccCCCCCCh----HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc--CHHHHH
Q psy5660          26 QQLKYDPLENTP----EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK--NYRSCL   99 (337)
Q Consensus        26 qaL~~dp~~~~~----~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg--~~~~Al   99 (337)
                      ++|..+|+..+.    ......+...|+.....|++.+|+.+|++++..+|.    +..+|.++|.++..++  ++.+|+
T Consensus        54 ~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk----~~~~~~~~~~~~~~~~~~~~~~a~  129 (334)
T d1dcea1          54 QILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK----SYGTWHHRCWLLSRLPEPNWAREL  129 (334)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC----cHHHHHHhhHHHHHhccccHHHHH
Confidence            456678733221    112233444555666778899999999999999998    6689999999988876  489999


Q ss_pred             HHHHHHHhhCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         100 TDCQIALKLKPDYPKVK-LRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       100 ~d~~~Al~l~P~~~ka~-~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ..+.++++++|++..++ +..|.++...+++++|+.+++++++++|++..+...++.+...
T Consensus       130 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~  190 (334)
T d1dcea1         130 ELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ  190 (334)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            99999999999999986 4678999999999999999999999999999999888887665

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=1.1e-08  Score=90.96  Aligned_cols=107  Identities=10%  Similarity=0.014  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc--CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC--ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---  112 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p--~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---  112 (337)
                      ++.++.|...||.+...|+|++|+.+|.+|+++..  .++...+.+|.|+|.|+.++|++++|+..+++|+++.+.+   
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~  113 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF  113 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence            46688999999999999999999999999999743  2333467899999999999999999999999999986655   


Q ss_pred             ---HHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCC
Q psy5660         113 ---PKVKLRAAQCLFH-LKKFEDCTHLCDELLKENP  144 (337)
Q Consensus       113 ---~ka~~r~a~a~~~-lg~~~eA~~~~~~al~l~P  144 (337)
                         ..++.++|.++.. +|++++|+.+|++++++.+
T Consensus       114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_         114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence               5788899998854 7999999999999998854

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=2.2e-08  Score=88.95  Aligned_cols=114  Identities=12%  Similarity=0.084  Sum_probs=97.5

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC--chHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhCC
Q psy5660          34 ENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD--NDVNAQLYNNRAASNFF-LKNYRSCLTDCQIALKLKP  110 (337)
Q Consensus        34 ~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~--~~~~~~~~~nra~~~~~-lg~~~~Al~d~~~Al~l~P  110 (337)
                      .+.+...+..+.+.|+.+.+.|++++|+.+|.+++.+.+..  ......++.++|.++.. +|++++|+..+++|+++.+
T Consensus        70 ~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_          70 AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            35566789999999999999999999999999999986543  23356788889988865 7999999999999998843


Q ss_pred             C------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660         111 D------YPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS  147 (337)
Q Consensus       111 ~------~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~  147 (337)
                      .      ...++.++|.++..+|+|++|+..|++++.+.+.+.
T Consensus       150 ~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         150 QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             hcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            2      246788999999999999999999999999988775

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=1e-08  Score=92.44  Aligned_cols=109  Identities=9%  Similarity=-0.120  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc-------------------------------
Q psy5660          44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL-------------------------------   92 (337)
Q Consensus        44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l-------------------------------   92 (337)
                      +...|+.+...++++.|+.+|+++|..+|.    +..+|.++|.++..+                               
T Consensus       147 ~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~----~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  222 (334)
T d1dcea1         147 DYRRFVAAQAAVAPAEELAFTDSLITRNFS----NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD  222 (334)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHTTTTTTCC----CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHhccccHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhc
Confidence            346678888888999999999999999888    446677777665554                               


Q ss_pred             ---------------------------------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5660          93 ---------------------------------KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDEL  139 (337)
Q Consensus        93 ---------------------------------g~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~a  139 (337)
                                                       |++.+|+..+.+++..+|.+..+++.+|.++..+|++++|+++|+++
T Consensus       223 ~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~a  302 (334)
T d1dcea1         223 PNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL  302 (334)
T ss_dssp             SSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                                             44556666777777777888888888999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHH
Q psy5660         140 LKENPTDSTVIDLRTSC  156 (337)
Q Consensus       140 l~l~P~~~~~~~~l~~~  156 (337)
                      ++++|.+......++..
T Consensus       303 i~ldP~~~~y~~~L~~~  319 (334)
T d1dcea1         303 KAVDPMRAAYLDDLRSK  319 (334)
T ss_dssp             HHHCGGGHHHHHHHHHH
T ss_pred             HHHCcccHHHHHHHHHH
Confidence            99999887776655443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=2.8e-08  Score=87.63  Aligned_cols=110  Identities=13%  Similarity=0.023  Sum_probs=98.8

Q ss_pred             CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------
Q psy5660          35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL------  108 (337)
Q Consensus        35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l------  108 (337)
                      ..+...+..+...|..+...|+++.|...|.+++...+.+.......+.|+|.+++.+|++.+|+..+++++..      
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  286 (366)
T d1hz4a_         207 YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL  286 (366)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhccc
Confidence            34556777888999999999999999999999999998887778888999999999999999999999999854      


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q psy5660         109 KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP  144 (337)
Q Consensus       109 ~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P  144 (337)
                      .|....+++.+|.++..+|++++|+..+++++++.+
T Consensus       287 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         287 MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            466778999999999999999999999999998854

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.66  E-value=4.9e-08  Score=86.10  Aligned_cols=92  Identities=11%  Similarity=0.017  Sum_probs=81.5

Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q psy5660          47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHL  126 (337)
Q Consensus        47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~l  126 (337)
                      ++..++++|++++|+..|+++|+.+|+    +..++.++|.++...|++++|+..++++++++|++..++..++.++...
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~----d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~   77 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPK----DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA   77 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            467788999999999999999999999    6699999999999999999999999999999999999999999998888


Q ss_pred             CCHHHHHHHHHHHHhh
Q psy5660         127 KKFEDCTHLCDELLKE  142 (337)
Q Consensus       127 g~~~eA~~~~~~al~l  142 (337)
                      +..+++...+.....+
T Consensus        78 ~~~~~a~~~~~~~~~~   93 (264)
T d1zbpa1          78 QARKDFAQGAATAKVL   93 (264)
T ss_dssp             HHHHHHTTSCCCEECC
T ss_pred             cccHHHHHHhhhhhcc
Confidence            8887776665544333

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2e-08  Score=96.37  Aligned_cols=106  Identities=2%  Similarity=-0.109  Sum_probs=65.9

Q ss_pred             HHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q psy5660          48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLK  127 (337)
Q Consensus        48 Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg  127 (337)
                      +......+.|..|+..|.+++.++|.    ....+.|+|.++.+.|++..|+..+.+++.++|  ..+++++|.++...|
T Consensus        93 ~~l~~a~~~Y~~ai~~l~~~~~l~~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~  166 (497)
T d1ya0a1          93 LFLEAASGFYTQLLQELCTVFNVDLP----CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRN  166 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHTC-----------------------------------CCHHHHHHH--HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCChh----hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcc
Confidence            44455567788888888888888887    568899999999999999999999999999887  478999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         128 KFEDCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       128 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ++++|+.+|+++++++|++......++.+...
T Consensus       167 ~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~  198 (497)
T d1ya0a1         167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASS  198 (497)
T ss_dssp             CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            99999999999999999999999999998765

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=1.2e-07  Score=83.33  Aligned_cols=105  Identities=7%  Similarity=-0.152  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCch-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----
Q psy5660          39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADND-VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY-----  112 (337)
Q Consensus        39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~-~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~-----  112 (337)
                      -.++...-+|..++..|++++|+.+|+++++..|.+.. ....++.++|.++..+|++++|+..+.+|+++.+..     
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   89 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   89 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence            45677777899999999999999999999999987553 356789999999999999999999999999986543     


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660         113 -PKVKLRAAQCLFHLKKFEDCTHLCDELLKEN  143 (337)
Q Consensus       113 -~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~  143 (337)
                       ..+++.++.++...|++..|...+.+++.+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             4677889999999999999999999999764

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=4.3e-07  Score=70.09  Aligned_cols=81  Identities=14%  Similarity=0.030  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHc---cCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          79 AQLYNNRAASNFFL---KNYRSCLTDCQIALKLKPDYP-KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT  154 (337)
Q Consensus        79 ~~~~~nra~~~~~l---g~~~~Al~d~~~Al~l~P~~~-ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  154 (337)
                      ....+|.|.|..+-   .+.++||..++.+++.+|.+. .++|.+|.+++.+|+|+.|..+++++|+++|+|..+..+..
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            46677888887754   567799999999999999764 79999999999999999999999999999999999998888


Q ss_pred             HHHHH
Q psy5660         155 SCINK  159 (337)
Q Consensus       155 ~~~~~  159 (337)
                      .+.++
T Consensus       115 ~Ie~~  119 (124)
T d2pqrb1         115 MVEDK  119 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.41  E-value=4.1e-07  Score=73.06  Aligned_cols=74  Identities=8%  Similarity=-0.057  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC-------CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q psy5660          38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA-------DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP  110 (337)
Q Consensus        38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~-------~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P  110 (337)
                      ...+..+.+.|..+++.|+|+.|+..|+++|.+.+.       .......+|+|+|.++..+|++++|+.++++|+++.|
T Consensus        52 ~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          52 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            356788999999999999999999999999987542       2223566899999999999999999999999999966


Q ss_pred             C
Q psy5660         111 D  111 (337)
Q Consensus       111 ~  111 (337)
                      .
T Consensus       132 ~  132 (156)
T d2hr2a1         132 E  132 (156)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.16  E-value=4.5e-06  Score=73.08  Aligned_cols=72  Identities=13%  Similarity=0.016  Sum_probs=65.3

Q ss_pred             HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660          87 ASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN  158 (337)
Q Consensus        87 ~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~  158 (337)
                      .-.++.|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++++|++......+..+..
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~   75 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK   75 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            345678999999999999999999999999999999999999999999999999999999888777666543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.12  E-value=3.7e-05  Score=63.01  Aligned_cols=82  Identities=7%  Similarity=-0.069  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----------------------HHHHHHHHHHHHhcCCHHHHHHH
Q psy5660          78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY----------------------PKVKLRAAQCLFHLKKFEDCTHL  135 (337)
Q Consensus        78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~----------------------~ka~~r~a~a~~~lg~~~eA~~~  135 (337)
                      ....+.++|......|++.+|+..|.+|+.+.+..                      ..++.++|.++..+|++++|+.+
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            45678889999999999999999999999997753                      36788999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         136 CDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       136 ~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      ++++++++|.+..+...+..+...
T Consensus        90 ~~~al~~~P~~e~~~~~l~~al~~  113 (179)
T d2ff4a2          90 LEALTFEHPYREPLWTQLITAYYL  113 (179)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHH
Confidence            999999999999999888887765

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.09  E-value=1.9e-05  Score=60.59  Aligned_cols=83  Identities=10%  Similarity=-0.025  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q psy5660          37 PEELATTYKDEGNFNFKCNK---YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP  113 (337)
Q Consensus        37 ~~e~A~~~k~~Gn~~~k~g~---y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~  113 (337)
                      +.-.++.-++.|..+.+..+   .+.||..+++.+..+|.+   ...+++++|.+|+++|+|.+|+..++++|+++|+|.
T Consensus        31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~---~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~  107 (124)
T d2pqrb1          31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR---RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  107 (124)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence            33346788888988887754   578999999999887752   457999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy5660         114 KVKLRAAQC  122 (337)
Q Consensus       114 ka~~r~a~a  122 (337)
                      .|....-.+
T Consensus       108 qA~~L~~~I  116 (124)
T d2pqrb1         108 QVGALKSMV  116 (124)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            886554433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=9.4e-05  Score=65.11  Aligned_cols=113  Identities=14%  Similarity=-0.005  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ  121 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~  121 (337)
                      ..+...+....+.|+++.|...|.+++...|.+.   ..+|...+....+.|++..|...+.+|++..|.....+...|.
T Consensus       100 ~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~---~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~  176 (308)
T d2onda1         100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP---TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL  176 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT---HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            3455666777778888888888888888877642   3467777777778888888888888888888888888887776


Q ss_pred             HHH-hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660         122 CLF-HLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus       122 a~~-~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                      ... ..|+.+.|...|+++++..|.+..+........
T Consensus       177 ~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~  213 (308)
T d2onda1         177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL  213 (308)
T ss_dssp             HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            643 457888888888888888888877665555443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=9.1e-05  Score=65.20  Aligned_cols=102  Identities=15%  Similarity=0.190  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660          42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNF-FLKNYRSCLTDCQIALKLKPDYPKVKLRAA  120 (337)
Q Consensus        42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~-~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a  120 (337)
                      ..+...++...+.|+++.|...|.+|+...|...    ..|.+.|.... ..|+...|...++++++..|.+...+...+
T Consensus       135 ~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~----~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~  210 (308)
T d2onda1         135 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH----HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYI  210 (308)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT----HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            4567788888899999999999999999999844    66777776644 468999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660         121 QCLFHLKKFEDCTHLCDELLKENPTDS  147 (337)
Q Consensus       121 ~a~~~lg~~~eA~~~~~~al~l~P~~~  147 (337)
                      ......|+++.|...|+++++..|.++
T Consensus       211 ~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         211 DYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            999999999999999999999887654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.79  E-value=0.00019  Score=61.16  Aligned_cols=96  Identities=10%  Similarity=0.062  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660          41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF----LKNYRSCLTDCQIALKLKPDYPKVK  116 (337)
Q Consensus        41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~----lg~~~~Al~d~~~Al~l~P~~~ka~  116 (337)
                      ++++.+.|..++.+|+|.+|+.+|++|.+..      ...++.++|.++..    ..++..|...+..+...+  ++.+.
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~   73 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC   73 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchh
Confidence            5688899999999999999999999998764      34788999999987    679999999999987654  78888


Q ss_pred             HHHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q psy5660         117 LRAAQCLFH----LKKFEDCTHLCDELLKENP  144 (337)
Q Consensus       117 ~r~a~a~~~----lg~~~eA~~~~~~al~l~P  144 (337)
                      ..+|.++..    .++.+.|..+++.+....+
T Consensus        74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~  105 (265)
T d1ouva_          74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKY  105 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             hccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            999888765    5789999999999987654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.44  E-value=0.00098  Score=51.01  Aligned_cols=80  Identities=8%  Similarity=-0.059  Sum_probs=49.6

Q ss_pred             CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----c
Q psy5660          55 NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF----LKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFH----L  126 (337)
Q Consensus        55 g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~----lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~----l  126 (337)
                      .++++|+..|+++.+..      ++.+.+++|..|+.    ..++.+|+..+++|.+.  .++.+.+++|.++..    .
T Consensus        37 ~~~~~a~~~~~~aa~~g------~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~  108 (133)
T d1klxa_          37 INKQKLFQYLSKACELN------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVV  108 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred             cCHHHHHHHHhhhhccc------chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccC
Confidence            45666666666666543      23556666666654    34566777777776654  356666677766665    3


Q ss_pred             CCHHHHHHHHHHHHhh
Q psy5660         127 KKFEDCTHLCDELLKE  142 (337)
Q Consensus       127 g~~~eA~~~~~~al~l  142 (337)
                      .++.+|+.+|+++.++
T Consensus       109 ~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_         109 KNEKQAVKTFEKACRL  124 (133)
T ss_dssp             CCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHC
Confidence            4666777777766654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.41  E-value=0.00078  Score=57.15  Aligned_cols=61  Identities=11%  Similarity=0.031  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhh
Q psy5660          80 QLYNNRAASNFF----LKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFH----LKKFEDCTHLCDELLKE  142 (337)
Q Consensus        80 ~~~~nra~~~~~----lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~----lg~~~eA~~~~~~al~l  142 (337)
                      .+.+|+|.++..    .++++.|+..+++|.+.  .++.+++++|.++..    ..++.+|+.+|+++...
T Consensus       179 ~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         179 PGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             ccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence            444555555544    34555555555555444  245555555555543    22455555555555444

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.05  E-value=0.0031  Score=48.03  Aligned_cols=93  Identities=9%  Similarity=-0.088  Sum_probs=74.0

Q ss_pred             CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHH
Q psy5660          55 NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFH----LKKFE  130 (337)
Q Consensus        55 g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~----lg~~~  130 (337)
                      +++++|+.+|++|.+....      .++.+++.  ....++.+|+..+++|.+.  .++.+.+++|..+..    ..++.
T Consensus         7 kd~~~A~~~~~kaa~~g~~------~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~   76 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNEM------FGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLR   76 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTCT------THHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             cCHHHHHHHHHHHHHCCCh------hhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhH
Confidence            5899999999999987543      34455553  3567999999999999865  689999999999886    56899


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660         131 DCTHLCDELLKENPTDSTVIDLRTSCINK  159 (337)
Q Consensus       131 eA~~~~~~al~l~P~~~~~~~~l~~~~~~  159 (337)
                      .|+.+|+++.+.  .++.+...++.+...
T Consensus        77 ~A~~~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          77 KAAQYYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhcc--CcchHHHHHHHHHHc
Confidence            999999999876  567777777766543

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.44  E-value=0.17  Score=34.49  Aligned_cols=33  Identities=21%  Similarity=0.217  Sum_probs=21.1

Q ss_pred             ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Q psy5660          36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGL   68 (337)
Q Consensus        36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai   68 (337)
                      .|.+.|..+--++..+.+.|+|++||+|+.+|.
T Consensus         3 sPLN~AH~~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1           3 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            456666666666666666666666666665443

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.95  E-value=4.6  Score=27.82  Aligned_cols=35  Identities=17%  Similarity=0.266  Sum_probs=30.5

Q ss_pred             ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660          36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKI   70 (337)
Q Consensus        36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~   70 (337)
                      .....|..+..++-.+=..|+|..|+.+|.+||+.
T Consensus        10 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34577888899999999999999999999999875

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.26  E-value=3.2  Score=35.87  Aligned_cols=101  Identities=12%  Similarity=0.080  Sum_probs=52.1

Q ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-------------hhC--
Q psy5660          45 KDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL-------------KLK--  109 (337)
Q Consensus        45 k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al-------------~l~--  109 (337)
                      ..-|..+++.|.|+.|..+|+..=.            |...+.|+.++++|..|.+...++=             +.+  
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~~d------------~~rl~~~~v~l~~~~~avd~~~k~~~~~~~k~~~~~l~~~~e~   85 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNVSN------------FGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEF   85 (336)
T ss_dssp             -----------CTTTHHHHHHHTTC------------HHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCC------------HHHHHHHHHhhccHHHHHHHHHHcCCHHHHHHHHHHHHhCcHH
Confidence            3567777777777777777763111            3334455566666666665554431             000  


Q ss_pred             ----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660         110 ----------PDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI  157 (337)
Q Consensus       110 ----------P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  157 (337)
                                -.++.-.--....+...|.+++.+..+..++..++.+......+..+.
T Consensus        86 ~la~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~ly  143 (336)
T d1b89a_          86 RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY  143 (336)
T ss_dssp             HHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHH
Confidence                      112233334556667778888888888888877777766655554443